Query 007873
Match_columns 586
No_of_seqs 249 out of 3312
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 16:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 2.6E-68 5.6E-73 594.0 48.8 462 82-584 479-965 (977)
2 PRK14099 glycogen synthase; Pr 100.0 5.7E-67 1.2E-71 570.4 47.0 459 82-583 1-476 (485)
3 PRK14098 glycogen synthase; Pr 100.0 2.4E-66 5.1E-71 566.1 47.5 464 84-584 5-484 (489)
4 TIGR02095 glgA glycogen/starch 100.0 5.3E-63 1.1E-67 541.1 47.5 458 85-585 1-472 (473)
5 PRK00654 glgA glycogen synthas 100.0 7.1E-62 1.5E-66 530.6 47.3 451 85-584 1-461 (466)
6 PLN02316 synthase/transferase 100.0 1.8E-61 3.9E-66 548.9 48.3 432 77-584 580-1032(1036)
7 cd03791 GT1_Glycogen_synthase_ 100.0 4.6E-59 9.9E-64 510.6 47.6 462 86-584 1-475 (476)
8 COG0297 GlgA Glycogen synthase 100.0 9.6E-58 2.1E-62 486.8 41.6 459 85-584 1-476 (487)
9 TIGR02468 sucrsPsyn_pln sucros 100.0 2.5E-40 5.4E-45 375.4 38.0 447 82-583 167-668 (1050)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 2E-39 4.3E-44 351.6 38.9 389 99-583 24-438 (439)
11 TIGR02094 more_P_ylases alpha- 100.0 3.2E-39 7E-44 355.9 40.4 473 87-583 1-598 (601)
12 PRK10307 putative glycosyl tra 100.0 2.2E-39 4.8E-44 348.5 37.5 390 85-583 1-405 (412)
13 TIGR03449 mycothiol_MshA UDP-N 100.0 2.8E-39 6.1E-44 346.6 36.3 382 87-584 1-400 (405)
14 TIGR02149 glgA_Coryne glycogen 100.0 5.3E-39 1.2E-43 341.9 36.2 370 85-584 1-385 (388)
15 cd03796 GT1_PIG-A_like This fa 100.0 1.2E-38 2.6E-43 341.3 36.3 357 86-584 1-366 (398)
16 TIGR02470 sucr_synth sucrose s 100.0 2.3E-38 5E-43 353.3 39.5 422 84-583 255-745 (784)
17 PLN02871 UDP-sulfoquinovose:DA 100.0 2E-38 4.4E-43 346.2 38.1 368 82-581 56-429 (465)
18 PRK15484 lipopolysaccharide 1, 100.0 3.2E-37 7E-42 328.2 37.0 358 86-584 4-376 (380)
19 cd04962 GT1_like_5 This family 100.0 7.1E-37 1.5E-41 323.0 37.6 362 85-584 1-369 (371)
20 PRK15427 colanic acid biosynth 100.0 2.1E-37 4.7E-42 332.0 33.7 274 226-584 117-404 (406)
21 PLN00142 sucrose synthase 100.0 6.8E-37 1.5E-41 341.5 36.1 320 227-583 408-768 (815)
22 cd03818 GT1_ExpC_like This fam 100.0 1.9E-36 4.1E-41 324.1 37.3 378 86-581 1-396 (396)
23 cd03800 GT1_Sucrose_synthase T 100.0 5.7E-36 1.2E-40 318.6 35.6 381 85-581 7-398 (398)
24 PLN02846 digalactosyldiacylgly 100.0 8.1E-36 1.7E-40 318.6 29.8 377 83-585 3-391 (462)
25 cd03805 GT1_ALG2_like This fam 100.0 2.4E-35 5.3E-40 314.2 32.3 229 309-579 147-392 (392)
26 cd03802 GT1_AviGT4_like This f 100.0 1.3E-34 2.9E-39 300.9 36.7 328 85-583 1-334 (335)
27 TIGR03088 stp2 sugar transfera 100.0 5.2E-35 1.1E-39 310.1 33.4 356 85-584 2-371 (374)
28 cd04299 GT1_Glycogen_Phosphory 100.0 2.8E-34 6.1E-39 321.5 39.9 470 86-583 87-687 (778)
29 cd03792 GT1_Trehalose_phosphor 100.0 6.1E-34 1.3E-38 302.1 36.6 274 227-584 85-370 (372)
30 cd04955 GT1_like_6 This family 100.0 1.6E-33 3.4E-38 295.9 38.7 355 86-583 1-362 (363)
31 cd05844 GT1_like_7 Glycosyltra 100.0 6.2E-34 1.3E-38 300.1 34.6 272 227-581 82-366 (367)
32 KOG1111 N-acetylglucosaminyltr 100.0 3.3E-35 7.1E-40 290.8 22.2 361 85-584 1-365 (426)
33 cd03819 GT1_WavL_like This fam 100.0 1.2E-33 2.6E-38 296.1 34.4 338 99-575 8-355 (355)
34 PRK10125 putative glycosyl tra 100.0 6.1E-34 1.3E-38 304.6 32.8 375 85-584 1-403 (405)
35 cd03814 GT1_like_2 This family 100.0 2.5E-33 5.5E-38 292.7 35.8 359 86-583 1-363 (364)
36 cd03794 GT1_wbuB_like This fam 100.0 3.5E-33 7.6E-38 292.7 35.4 382 86-580 1-394 (394)
37 cd03825 GT1_wcfI_like This fam 100.0 3.5E-33 7.7E-38 293.2 34.9 349 85-584 1-363 (365)
38 cd04951 GT1_WbdM_like This fam 100.0 6.5E-33 1.4E-37 290.6 36.4 353 86-584 1-359 (360)
39 PRK09922 UDP-D-galactose:(gluc 100.0 7.8E-34 1.7E-38 300.0 29.3 341 85-581 1-351 (359)
40 cd03807 GT1_WbnK_like This fam 100.0 3.5E-33 7.5E-38 290.4 33.7 355 86-583 1-364 (365)
41 cd03795 GT1_like_4 This family 100.0 7.5E-33 1.6E-37 289.8 35.6 349 86-576 1-357 (357)
42 cd03821 GT1_Bme6_like This fam 100.0 3E-33 6.6E-38 291.9 32.5 366 86-581 1-375 (375)
43 cd03823 GT1_ExpE7_like This fa 100.0 7.3E-33 1.6E-37 288.3 35.1 356 86-583 1-357 (359)
44 cd03812 GT1_CapH_like This fam 100.0 3.8E-33 8.3E-38 292.6 32.7 349 86-578 1-355 (358)
45 cd03799 GT1_amsK_like This is 100.0 9.6E-33 2.1E-37 288.8 35.4 341 86-578 1-354 (355)
46 cd03801 GT1_YqgM_like This fam 100.0 5.2E-32 1.1E-36 280.5 37.1 366 86-583 1-373 (374)
47 cd03813 GT1_like_3 This family 100.0 4.6E-33 9.9E-38 304.7 29.7 285 227-583 173-474 (475)
48 cd03809 GT1_mtfB_like This fam 100.0 6E-33 1.3E-37 290.3 29.4 360 86-581 1-365 (365)
49 PRK15179 Vi polysaccharide bio 100.0 3.4E-32 7.4E-37 304.3 36.9 281 227-584 400-692 (694)
50 cd03817 GT1_UGDG_like This fam 100.0 7.1E-32 1.5E-36 281.8 35.0 362 86-579 1-370 (374)
51 cd03816 GT1_ALG1_like This fam 100.0 1.6E-31 3.4E-36 287.7 37.1 373 84-579 3-410 (415)
52 cd03822 GT1_ecORF704_like This 100.0 1.7E-31 3.7E-36 279.4 36.1 348 86-583 1-365 (366)
53 cd03806 GT1_ALG11_like This fa 100.0 5.6E-32 1.2E-36 291.3 32.6 218 309-577 182-418 (419)
54 cd03820 GT1_amsD_like This fam 100.0 2E-31 4.4E-36 274.8 33.9 340 86-581 1-348 (348)
55 cd03808 GT1_cap1E_like This fa 100.0 3.3E-31 7.2E-36 274.5 35.0 353 86-581 1-359 (359)
56 PLN02949 transferase, transfer 100.0 1.6E-30 3.5E-35 281.5 36.5 222 311-583 215-454 (463)
57 cd03798 GT1_wlbH_like This fam 100.0 2E-30 4.4E-35 269.7 35.5 367 87-584 1-375 (377)
58 PRK15490 Vi polysaccharide bio 100.0 5.7E-31 1.2E-35 282.2 29.8 274 227-583 280-573 (578)
59 cd03793 GT1_Glycogen_synthase_ 100.0 8.2E-31 1.8E-35 281.1 30.2 441 90-585 7-586 (590)
60 PF08323 Glyco_transf_5: Starc 100.0 4.3E-32 9.3E-37 270.6 17.5 235 86-346 1-244 (245)
61 TIGR03087 stp1 sugar transfera 100.0 7.9E-31 1.7E-35 280.8 24.2 222 308-584 164-395 (397)
62 PLN02501 digalactosyldiacylgly 100.0 4.3E-30 9.3E-35 277.8 27.4 209 317-585 499-709 (794)
63 cd03811 GT1_WabH_like This fam 100.0 3.3E-29 7.2E-34 258.5 31.0 335 86-565 1-343 (353)
64 cd03804 GT1_wbaZ_like This fam 100.0 1.9E-29 4.2E-34 265.1 29.3 206 308-579 145-350 (351)
65 PHA01633 putative glycosyl tra 100.0 1.9E-28 4E-33 252.7 32.8 225 308-581 84-335 (335)
66 cd04946 GT1_AmsK_like This fam 100.0 3.6E-28 7.8E-33 261.0 29.7 219 309-580 176-406 (407)
67 TIGR02918 accessory Sec system 100.0 2E-28 4.4E-33 267.5 27.5 216 313-584 267-498 (500)
68 PHA01630 putative group 1 glyc 100.0 1.6E-28 3.6E-33 255.4 24.5 230 308-584 85-329 (331)
69 PLN02275 transferase, transfer 100.0 9.9E-28 2.1E-32 254.5 30.8 244 227-550 100-371 (371)
70 cd04949 GT1_gtfA_like This fam 100.0 6.3E-27 1.4E-31 247.9 24.1 216 309-579 150-372 (372)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.9 2E-26 4.4E-31 250.4 23.6 291 228-583 132-459 (460)
72 PRK00726 murG undecaprenyldiph 99.9 4.7E-25 1E-29 232.7 31.4 341 85-583 2-355 (357)
73 TIGR02400 trehalose_OtsA alpha 99.9 2.1E-25 4.7E-30 240.9 26.2 291 228-583 128-454 (456)
74 TIGR01133 murG undecaprenyldip 99.9 5.6E-24 1.2E-28 223.3 30.9 322 85-566 1-333 (348)
75 cd03785 GT1_MurG MurG is an N- 99.9 7.3E-24 1.6E-28 222.5 31.2 334 86-576 1-348 (350)
76 PRK13609 diacylglycerol glucos 99.9 5.8E-23 1.3E-27 218.7 30.1 219 314-584 145-370 (380)
77 PLN03063 alpha,alpha-trehalose 99.9 2E-22 4.3E-27 230.6 25.7 292 228-583 148-475 (797)
78 PLN02605 monogalactosyldiacylg 99.9 1.1E-21 2.4E-26 209.1 29.0 216 314-582 148-378 (382)
79 cd04950 GT1_like_1 Glycosyltra 99.9 2.5E-21 5.5E-26 205.7 31.6 219 308-582 145-368 (373)
80 PF00534 Glycos_transf_1: Glyc 99.9 2.6E-22 5.7E-27 189.0 20.0 165 387-567 2-171 (172)
81 PRK13608 diacylglycerol glucos 99.9 3.6E-21 7.7E-26 205.7 27.4 219 314-584 145-370 (391)
82 PRK14501 putative bifunctional 99.9 4.3E-22 9.4E-27 228.0 21.6 291 228-583 134-460 (726)
83 PRK05749 3-deoxy-D-manno-octul 99.9 3.7E-21 7.9E-26 208.0 25.4 213 308-566 170-400 (425)
84 KOG0853 Glycosyltransferase [C 99.9 1E-20 2.2E-25 199.8 23.0 236 313-583 206-465 (495)
85 cd01635 Glycosyltransferase_GT 99.9 4.3E-20 9.3E-25 179.7 23.3 118 407-524 109-229 (229)
86 TIGR02398 gluc_glyc_Psyn gluco 99.8 1.8E-19 4E-24 194.0 26.1 291 228-581 132-478 (487)
87 PRK09814 beta-1,6-galactofuran 99.8 1.4E-17 3.1E-22 174.1 29.3 208 258-566 92-310 (333)
88 PF05693 Glycogen_syn: Glycoge 99.8 6.7E-18 1.4E-22 180.7 24.4 436 90-584 2-580 (633)
89 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 4.4E-17 9.5E-22 172.1 27.6 200 313-562 138-345 (363)
90 PRK00025 lpxB lipid-A-disaccha 99.8 2.1E-17 4.5E-22 175.9 24.9 197 313-565 131-352 (380)
91 TIGR00236 wecB UDP-N-acetylglu 99.8 2.2E-17 4.8E-22 174.9 24.1 216 316-582 141-364 (365)
92 PLN03064 alpha,alpha-trehalose 99.8 5.1E-17 1.1E-21 185.5 25.0 291 228-582 232-558 (934)
93 COG0438 RfaG Glycosyltransfera 99.7 6.8E-16 1.5E-20 157.8 24.4 218 316-583 150-374 (381)
94 KOG1387 Glycosyltransferase [C 99.7 6.4E-16 1.4E-20 153.1 22.8 204 311-566 217-437 (465)
95 KOG2941 Beta-1,4-mannosyltrans 99.7 1.2E-13 2.6E-18 137.3 30.2 299 227-578 103-434 (444)
96 PF13692 Glyco_trans_1_4: Glyc 99.6 1.6E-15 3.5E-20 136.8 9.6 130 402-552 2-135 (135)
97 TIGR00215 lpxB lipid-A-disacch 99.6 2.7E-13 5.9E-18 144.5 25.5 210 311-565 133-362 (385)
98 TIGR03713 acc_sec_asp1 accesso 99.5 2.1E-12 4.5E-17 141.8 21.4 162 402-582 319-518 (519)
99 PF13439 Glyco_transf_4: Glyco 99.4 1.1E-12 2.4E-17 122.6 12.9 177 87-363 1-177 (177)
100 PF00982 Glyco_transf_20: Glyc 99.4 3.9E-11 8.4E-16 130.0 26.6 295 228-582 141-471 (474)
101 PRK10117 trehalose-6-phosphate 99.4 2E-11 4.3E-16 130.8 22.5 289 228-581 124-449 (474)
102 PLN02205 alpha,alpha-trehalose 99.3 1.3E-10 2.7E-15 134.1 24.7 267 229-557 203-522 (854)
103 PF13579 Glyco_trans_4_4: Glyc 99.3 3.2E-12 7E-17 117.3 8.6 159 101-356 1-160 (160)
104 COG0380 OtsA Trehalose-6-phosp 99.3 6.3E-09 1.4E-13 111.2 29.4 289 228-581 148-475 (486)
105 PF13524 Glyco_trans_1_2: Glyc 99.2 5E-11 1.1E-15 100.3 9.6 89 479-581 1-92 (92)
106 COG0058 GlgP Glucan phosphoryl 99.2 2.2E-10 4.7E-15 127.0 16.7 435 100-551 114-661 (750)
107 PRK12446 undecaprenyldiphospho 99.2 3E-08 6.4E-13 104.6 30.7 147 388-559 173-330 (352)
108 TIGR02919 accessory Sec system 99.2 7.6E-10 1.6E-14 119.0 18.1 177 315-560 238-417 (438)
109 COG0707 MurG UDP-N-acetylgluco 99.1 1.4E-07 3.1E-12 98.8 31.6 323 85-566 1-336 (357)
110 PRK14986 glycogen phosphorylas 99.0 2.6E-08 5.6E-13 112.0 20.8 299 228-532 313-701 (815)
111 PRK14985 maltodextrin phosphor 98.9 3.4E-08 7.5E-13 110.6 17.1 296 227-530 302-685 (798)
112 cd04300 GT1_Glycogen_Phosphory 98.9 2.3E-07 5E-12 104.6 23.5 292 227-530 300-686 (797)
113 KOG3742 Glycogen synthase [Car 98.9 8.6E-09 1.9E-13 105.8 9.6 315 228-581 174-608 (692)
114 PF09314 DUF1972: Domain of un 98.8 9.3E-08 2E-12 90.3 15.5 181 86-358 3-185 (185)
115 TIGR02093 P_ylase glycogen/sta 98.7 2.8E-07 6E-12 103.6 17.7 298 227-531 297-684 (794)
116 PF13528 Glyco_trans_1_3: Glyc 98.7 1.6E-06 3.5E-11 89.8 22.3 119 401-549 192-317 (318)
117 PF00343 Phosphorylase: Carboh 98.7 1.3E-06 2.7E-11 97.4 22.1 288 230-525 216-595 (713)
118 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 3E-06 6.6E-11 89.8 23.2 213 315-581 143-363 (365)
119 PF04007 DUF354: Protein of un 98.6 6.3E-06 1.4E-10 85.6 21.9 294 85-552 1-310 (335)
120 COG0763 LpxB Lipid A disacchar 98.6 4.2E-06 9.2E-11 86.4 18.7 297 193-582 60-378 (381)
121 TIGR03590 PseG pseudaminic aci 98.6 3.1E-05 6.7E-10 79.0 24.9 96 403-508 172-268 (279)
122 TIGR03492 conserved hypothetic 98.5 6.4E-05 1.4E-09 80.6 27.7 207 314-580 158-393 (396)
123 cd03784 GT1_Gtf_like This fami 98.5 4.8E-05 1E-09 81.6 25.1 123 402-552 240-372 (401)
124 PF13477 Glyco_trans_4_2: Glyc 98.4 4.8E-06 1E-10 75.1 12.9 34 86-128 1-34 (139)
125 PF02350 Epimerase_2: UDP-N-ac 98.4 4.3E-05 9.4E-10 80.3 21.0 251 227-561 67-325 (346)
126 PRK01021 lpxB lipid-A-disaccha 98.4 0.00025 5.4E-09 78.2 27.0 225 309-581 354-605 (608)
127 PF02684 LpxB: Lipid-A-disacch 98.3 0.00015 3.2E-09 76.5 23.4 312 106-552 13-340 (373)
128 COG1519 KdtA 3-deoxy-D-manno-o 98.1 0.0005 1.1E-08 72.0 22.6 211 307-566 168-398 (419)
129 PHA03392 egt ecdysteroid UDP-g 98.0 0.0063 1.4E-07 67.4 29.3 123 402-552 297-432 (507)
130 COG1817 Uncharacterized protei 98.0 0.0015 3.3E-08 65.6 21.5 184 313-552 123-314 (346)
131 TIGR00661 MJ1255 conserved hyp 97.9 0.0012 2.5E-08 68.8 20.9 119 403-552 190-314 (321)
132 COG0381 WecB UDP-N-acetylgluco 97.8 0.011 2.3E-07 61.7 23.7 200 315-564 144-351 (383)
133 PF13844 Glyco_transf_41: Glyc 97.6 0.0027 6E-08 68.5 17.2 179 391-583 276-464 (468)
134 PF12000 Glyco_trans_4_3: Gkyc 97.5 0.0013 2.9E-08 61.5 11.8 130 193-362 39-170 (171)
135 COG1819 Glycosyl transferases, 97.4 0.01 2.2E-07 63.9 19.1 153 403-581 239-397 (406)
136 PRK02797 4-alpha-L-fucosyltran 97.3 0.014 2.9E-07 59.3 17.3 116 403-519 146-270 (322)
137 PRK10017 colanic acid biosynth 97.2 0.5 1.1E-05 51.1 29.8 211 308-561 168-399 (426)
138 PF04464 Glyphos_transf: CDP-G 97.2 0.011 2.4E-07 62.7 15.8 192 310-552 128-336 (369)
139 PF07429 Glyco_transf_56: 4-al 97.1 0.27 5.7E-06 50.8 23.6 140 403-551 185-332 (360)
140 PRK14089 ipid-A-disaccharide s 97.0 0.091 2E-06 55.2 20.6 91 403-507 169-261 (347)
141 PF00862 Sucrose_synth: Sucros 97.0 0.003 6.6E-08 67.5 9.4 81 227-329 401-481 (550)
142 TIGR01426 MGT glycosyltransfer 96.9 0.023 5.1E-07 60.7 15.9 153 402-581 226-388 (392)
143 COG3660 Predicted nucleoside-d 96.9 0.15 3.3E-06 50.3 19.2 192 226-507 69-272 (329)
144 COG4641 Uncharacterized protei 96.9 0.03 6.5E-07 58.1 15.3 202 317-582 139-358 (373)
145 KOG1050 Trehalose-6-phosphate 96.7 0.081 1.8E-06 60.4 18.2 263 228-553 141-441 (732)
146 COG4671 Predicted glycosyl tra 96.4 1.5 3.2E-05 45.4 25.2 138 402-552 220-365 (400)
147 COG3914 Spy Predicted O-linked 96.3 0.13 2.7E-06 56.2 15.4 112 391-507 421-538 (620)
148 PF11997 DUF3492: Domain of un 95.8 0.017 3.8E-07 58.3 6.3 43 85-128 1-43 (268)
149 PF06258 Mito_fiss_Elm1: Mitoc 95.8 0.48 1E-05 49.0 16.8 117 387-510 134-259 (311)
150 COG3980 spsG Spore coat polysa 95.4 1.5 3.3E-05 44.0 17.6 88 404-503 161-249 (318)
151 PF06925 MGDG_synth: Monogalac 94.8 0.15 3.3E-06 47.7 8.8 28 314-344 135-162 (169)
152 PF10087 DUF2325: Uncharacteri 93.2 0.23 5E-06 41.9 5.9 80 434-514 2-89 (97)
153 TIGR02195 heptsyl_trn_II lipop 92.6 1.6 3.4E-05 45.6 12.5 114 387-508 161-278 (334)
154 PLN02448 UDP-glycosyltransfera 92.5 1.7 3.6E-05 47.7 13.1 134 402-552 275-415 (459)
155 PRK10422 lipopolysaccharide co 91.9 6.5 0.00014 41.3 16.3 103 402-509 184-290 (352)
156 TIGR03609 S_layer_CsaB polysac 90.9 11 0.00024 38.5 16.4 100 403-507 173-276 (298)
157 PF11440 AGT: DNA alpha-glucos 90.8 20 0.00043 36.2 23.5 141 402-552 180-353 (355)
158 PLN02562 UDP-glycosyltransfera 90.6 3.4 7.3E-05 45.2 12.7 130 402-552 274-413 (448)
159 TIGR02193 heptsyl_trn_I lipopo 90.4 6 0.00013 40.8 14.0 135 403-550 181-319 (319)
160 PF04101 Glyco_tran_28_C: Glyc 89.6 0.076 1.7E-06 49.4 -0.9 82 469-564 65-154 (167)
161 cd03789 GT1_LPS_heptosyltransf 89.4 2.4 5.1E-05 42.9 9.9 103 404-513 124-230 (279)
162 PF12038 DUF3524: Domain of un 89.2 2.3 4.9E-05 39.4 8.4 35 85-127 1-35 (168)
163 PF01075 Glyco_transf_9: Glyco 88.7 2.8 6E-05 41.5 9.7 103 401-508 105-210 (247)
164 TIGR02201 heptsyl_trn_III lipo 88.2 7.2 0.00016 40.8 12.8 102 403-509 183-288 (344)
165 PLN02173 UDP-glucosyl transfer 88.1 6.8 0.00015 42.8 12.7 138 402-552 265-408 (449)
166 COG0859 RfaF ADP-heptose:LPS h 87.2 12 0.00027 39.0 13.8 100 403-509 177-279 (334)
167 PLN02670 transferase, transfer 86.1 19 0.00041 39.6 14.9 73 473-552 352-429 (472)
168 PF01975 SurE: Survival protei 85.5 0.98 2.1E-05 43.4 4.1 39 85-130 1-39 (196)
169 PLN02410 UDP-glucoronosyl/UDP- 84.7 28 0.0006 38.1 15.4 68 473-552 337-410 (451)
170 PF00201 UDPGT: UDP-glucoronos 84.2 6.5 0.00014 43.4 10.5 127 401-552 276-409 (500)
171 PRK10916 ADP-heptose:LPS hepto 84.0 13 0.00028 38.9 12.2 111 389-507 169-287 (348)
172 PF05159 Capsule_synth: Capsul 83.7 3.6 7.8E-05 41.5 7.5 100 400-508 115-226 (269)
173 PLN03004 UDP-glycosyltransfera 83.5 17 0.00036 39.8 13.0 137 402-552 271-424 (451)
174 PLN02208 glycosyltransferase f 83.1 17 0.00038 39.6 12.9 72 473-552 324-401 (442)
175 PLN02210 UDP-glucosyl transfer 83.0 24 0.00051 38.7 14.0 138 402-552 270-415 (456)
176 PLN02167 UDP-glycosyltransfera 82.3 23 0.00051 38.9 13.7 139 402-552 281-434 (475)
177 PF02951 GSH-S_N: Prokaryotic 82.2 6.2 0.00013 34.7 7.3 83 85-170 1-87 (119)
178 PLN00164 glucosyltransferase; 81.6 16 0.00035 40.2 12.1 74 473-552 352-431 (480)
179 PF01113 DapB_N: Dihydrodipico 80.4 3.3 7.2E-05 36.5 5.1 46 468-513 59-104 (124)
180 PF08288 PIGA: PIGA (GPI ancho 80.2 8 0.00017 31.9 6.7 36 227-268 50-85 (90)
181 PRK10964 ADP-heptose:LPS hepto 79.9 29 0.00063 35.8 12.9 101 403-510 180-282 (322)
182 PLN03007 UDP-glucosyltransfera 79.6 29 0.00064 38.2 13.4 141 401-552 285-440 (482)
183 PLN02555 limonoid glucosyltran 79.3 32 0.00069 37.9 13.4 60 490-552 365-429 (480)
184 PRK00207 sulfur transfer compl 77.1 4.4 9.5E-05 36.1 4.9 39 85-126 1-40 (128)
185 PLN02863 UDP-glucoronosyl/UDP- 75.6 59 0.0013 35.9 14.2 133 402-551 284-432 (477)
186 PLN02764 glycosyltransferase f 74.5 37 0.00081 37.1 12.1 73 473-552 330-407 (453)
187 PF03033 Glyco_transf_28: Glyc 73.1 5.2 0.00011 35.5 4.4 28 100-127 8-35 (139)
188 PF08660 Alg14: Oligosaccharid 72.5 13 0.00028 34.8 7.0 37 227-265 92-128 (170)
189 PF03016 Exostosin: Exostosin 71.6 13 0.00028 37.8 7.5 69 469-547 229-300 (302)
190 PLN02207 UDP-glycosyltransfera 71.5 1.1E+02 0.0024 33.6 15.0 139 402-551 276-425 (468)
191 PLN00414 glycosyltransferase f 71.4 60 0.0013 35.4 12.9 70 473-552 325-402 (446)
192 PLN02152 indole-3-acetate beta 71.1 98 0.0021 33.9 14.4 138 402-552 262-417 (455)
193 PLN02554 UDP-glycosyltransfera 71.0 94 0.002 34.3 14.5 62 489-551 368-439 (481)
194 KOG1021 Acetylglucosaminyltran 69.8 36 0.00078 37.4 10.8 85 468-565 335-422 (464)
195 PRK10840 transcriptional regul 67.8 1.1E+02 0.0023 29.2 12.7 110 431-552 3-126 (216)
196 cd03146 GAT1_Peptidase_E Type 67.7 59 0.0013 31.5 10.8 106 405-510 3-124 (212)
197 COG2910 Putative NADH-flavin r 65.2 9.2 0.0002 36.2 4.2 33 85-127 1-33 (211)
198 PRK10360 DNA-binding transcrip 63.5 1.1E+02 0.0025 28.0 11.8 108 433-552 3-118 (196)
199 PF15024 Glyco_transf_18: Glyc 63.0 47 0.001 36.9 9.8 136 403-553 278-431 (559)
200 PF03808 Glyco_tran_WecB: Glyc 62.2 41 0.0009 31.4 8.2 103 412-517 29-142 (172)
201 PF03358 FMN_red: NADPH-depend 61.4 14 0.00029 33.5 4.7 40 85-127 1-40 (152)
202 PF12996 DUF3880: DUF based on 61.3 21 0.00046 28.7 5.3 44 312-366 14-57 (79)
203 KOG2884 26S proteasome regulat 61.2 1.1E+02 0.0023 29.8 10.5 118 403-552 109-229 (259)
204 PRK13398 3-deoxy-7-phosphohept 60.6 1.9E+02 0.0042 29.1 13.8 102 405-508 28-142 (266)
205 PLN00016 RNA-binding protein; 60.4 11 0.00024 40.0 4.5 38 84-127 52-89 (378)
206 PF06564 YhjQ: YhjQ protein; 60.1 9.9 0.00021 37.8 3.7 37 85-127 1-39 (243)
207 KOG0780 Signal recognition par 60.0 2E+02 0.0044 30.7 13.1 164 404-583 156-340 (483)
208 TIGR00696 wecB_tagA_cpsF bacte 59.5 46 0.001 31.4 8.0 101 414-517 31-141 (177)
209 cd06533 Glyco_transf_WecG_TagA 59.2 70 0.0015 29.8 9.2 103 412-517 27-140 (171)
210 PRK06249 2-dehydropantoate 2-r 58.1 15 0.00033 37.9 5.0 36 81-127 2-37 (313)
211 PF04413 Glycos_transf_N: 3-De 57.9 85 0.0018 29.8 9.6 39 308-355 141-179 (186)
212 PLN02534 UDP-glycosyltransfera 56.3 2.5E+02 0.0054 31.1 14.2 78 472-551 356-443 (491)
213 PRK10037 cell division protein 56.3 13 0.00027 37.1 3.8 36 85-126 1-38 (250)
214 cd03129 GAT1_Peptidase_E_like 55.6 1.9E+02 0.0042 27.7 12.0 105 406-510 3-124 (210)
215 PRK13932 stationary phase surv 55.1 15 0.00032 36.9 4.0 39 83-129 4-42 (257)
216 COG4635 HemG Flavodoxin [Energ 53.0 20 0.00044 33.0 4.1 37 85-126 1-37 (175)
217 COG2327 WcaK Polysaccharide py 52.7 3.2E+02 0.0069 29.2 27.8 110 430-552 237-350 (385)
218 COG0111 SerA Phosphoglycerate 52.3 48 0.001 34.6 7.4 81 431-513 142-239 (324)
219 PRK13234 nifH nitrogenase redu 51.9 19 0.00041 36.9 4.4 38 82-126 1-40 (295)
220 PRK13397 3-deoxy-7-phosphohept 51.4 2.7E+02 0.0058 27.9 12.9 90 417-508 28-130 (250)
221 PF02826 2-Hacid_dh_C: D-isome 50.8 57 0.0012 30.6 7.2 81 431-513 36-133 (178)
222 PF04230 PS_pyruv_trans: Polys 50.0 2.4E+02 0.0051 27.3 12.0 91 413-508 188-284 (286)
223 PRK09739 hypothetical protein; 50.0 32 0.00069 32.9 5.4 43 82-127 1-43 (199)
224 CHL00072 chlL photochlorophyll 49.2 18 0.00039 37.0 3.7 35 85-127 1-37 (290)
225 TIGR00087 surE 5'/3'-nucleotid 48.3 21 0.00045 35.6 3.9 37 85-129 1-37 (244)
226 PLN02992 coniferyl-alcohol glu 47.8 44 0.00095 36.9 6.6 82 459-552 340-427 (481)
227 PRK08305 spoVFB dipicolinate s 47.0 36 0.00079 32.7 5.1 37 83-127 4-42 (196)
228 PRK09271 flavodoxin; Provision 46.3 33 0.00072 31.6 4.7 36 85-125 1-36 (160)
229 TIGR01007 eps_fam capsular exo 46.2 34 0.00073 32.7 4.9 39 84-126 16-54 (204)
230 PRK13396 3-deoxy-7-phosphohept 46.1 3.8E+02 0.0083 28.3 13.9 101 403-507 101-215 (352)
231 cd00027 BRCT Breast Cancer Sup 45.9 85 0.0019 23.1 6.4 64 432-507 2-65 (72)
232 PF02374 ArsA_ATPase: Anion-tr 45.7 22 0.00047 36.7 3.7 36 85-127 1-38 (305)
233 PRK00048 dihydrodipicolinate r 45.6 59 0.0013 32.5 6.7 42 470-511 54-95 (257)
234 COG1553 DsrE Uncharacterized c 45.4 43 0.00094 29.5 4.8 40 85-127 1-41 (126)
235 PF00962 A_deaminase: Adenosin 44.2 3.5E+02 0.0077 27.8 12.6 135 420-581 182-330 (331)
236 PRK03692 putative UDP-N-acetyl 44.2 88 0.0019 31.1 7.6 100 415-517 89-198 (243)
237 PRK13671 hypothetical protein; 43.9 80 0.0017 32.5 7.3 143 404-582 2-147 (298)
238 TIGR01425 SRP54_euk signal rec 43.6 4.6E+02 0.01 28.5 13.5 94 477-583 241-340 (429)
239 PRK08410 2-hydroxyacid dehydro 43.5 67 0.0014 33.2 6.9 45 469-513 189-238 (311)
240 TIGR02069 cyanophycinase cyano 43.3 3.2E+02 0.007 27.2 11.5 104 408-511 4-127 (250)
241 PF04392 ABC_sub_bind: ABC tra 43.3 3.7E+02 0.0079 27.2 13.7 105 413-522 113-229 (294)
242 PRK13933 stationary phase surv 43.1 27 0.00058 35.0 3.7 37 85-129 1-37 (253)
243 PRK13869 plasmid-partitioning 42.9 28 0.0006 37.5 4.1 38 83-126 119-158 (405)
244 TIGR03453 partition_RepA plasm 42.8 29 0.00063 37.0 4.3 39 83-127 102-142 (387)
245 PRK13849 putative crown gall t 42.8 31 0.00067 34.0 4.1 37 85-127 1-39 (231)
246 CHL00200 trpA tryptophan synth 42.8 3.7E+02 0.008 27.1 13.7 125 401-530 91-236 (263)
247 PRK05866 short chain dehydroge 42.6 43 0.00093 34.1 5.3 38 80-127 36-73 (293)
248 PRK13935 stationary phase surv 42.2 28 0.00061 34.8 3.7 38 85-130 1-38 (253)
249 TIGR03371 cellulose_yhjQ cellu 41.6 29 0.00063 34.0 3.8 37 85-127 1-39 (246)
250 PRK05718 keto-hydroxyglutarate 41.5 2.3E+02 0.005 27.6 9.9 72 415-486 24-97 (212)
251 cd02040 NifH NifH gene encodes 41.2 29 0.00064 34.6 3.8 28 100-127 9-38 (270)
252 PRK06932 glycerate dehydrogena 41.0 72 0.0016 33.0 6.7 44 470-513 191-239 (314)
253 KOG2099 Glycogen phosphorylase 40.5 52 0.0011 36.4 5.5 141 390-530 551-719 (843)
254 PLN02927 antheraxanthin epoxid 40.3 45 0.00097 38.4 5.4 33 82-125 79-111 (668)
255 PLN03015 UDP-glucosyl transfer 40.3 5.4E+02 0.012 28.3 15.0 72 473-551 348-425 (470)
256 TIGR01281 DPOR_bchL light-inde 40.2 30 0.00066 34.6 3.7 34 85-126 1-36 (268)
257 PRK14619 NAD(P)H-dependent gly 39.9 34 0.00074 35.2 4.1 35 82-127 2-36 (308)
258 TIGR03012 sulf_tusD_dsrE sulfu 39.8 50 0.0011 29.2 4.6 37 86-125 1-38 (127)
259 PF01081 Aldolase: KDPG and KH 39.7 2.4E+02 0.0052 27.1 9.5 77 407-486 12-90 (196)
260 PF09949 DUF2183: Uncharacteri 39.3 89 0.0019 26.5 5.8 33 430-462 63-95 (100)
261 PRK06015 keto-hydroxyglutarate 39.1 2.9E+02 0.0063 26.6 10.0 86 416-504 14-121 (201)
262 PRK00346 surE 5'(3')-nucleotid 38.9 35 0.00077 34.1 3.8 37 85-129 1-37 (250)
263 COG0496 SurE Predicted acid ph 38.8 33 0.00072 34.2 3.6 37 85-129 1-37 (252)
264 PRK07454 short chain dehydroge 38.7 38 0.00083 32.9 4.1 37 82-127 3-39 (241)
265 PRK06683 hypothetical protein; 38.6 1.9E+02 0.0041 23.5 7.4 50 416-470 15-65 (82)
266 TIGR01182 eda Entner-Doudoroff 38.3 3.2E+02 0.0069 26.4 10.2 70 416-485 18-89 (204)
267 PRK07308 flavodoxin; Validated 38.1 49 0.0011 29.7 4.4 26 100-125 12-37 (146)
268 PRK06756 flavodoxin; Provision 38.1 52 0.0011 29.6 4.6 37 85-126 2-38 (148)
269 PF00201 UDPGT: UDP-glucoronos 37.8 11 0.00025 41.4 0.2 28 101-128 10-37 (500)
270 PF02525 Flavodoxin_2: Flavodo 37.7 48 0.001 31.5 4.5 38 85-125 1-40 (199)
271 PF02635 DrsE: DsrE/DsrF-like 37.7 71 0.0015 27.1 5.3 40 85-127 1-43 (122)
272 CHL00175 minD septum-site dete 37.5 42 0.00091 33.9 4.3 38 85-126 15-52 (281)
273 TIGR01361 DAHP_synth_Bsub phos 37.3 4.4E+02 0.0096 26.4 11.7 98 408-508 29-140 (260)
274 PRK13934 stationary phase surv 37.2 38 0.00082 34.2 3.7 37 85-129 1-37 (266)
275 cd02032 Bchl_like This family 36.8 36 0.00079 34.0 3.7 35 85-127 1-37 (267)
276 PRK06487 glycerate dehydrogena 36.0 82 0.0018 32.7 6.2 80 432-513 149-239 (317)
277 TIGR01380 glut_syn glutathione 35.9 34 0.00074 35.3 3.4 40 85-127 1-40 (312)
278 PLN02695 GDP-D-mannose-3',5'-e 35.4 46 0.00099 35.2 4.3 35 83-127 20-54 (370)
279 PF01408 GFO_IDH_MocA: Oxidore 34.9 1.9E+02 0.0041 24.5 7.5 75 421-507 16-93 (120)
280 COG1192 Soj ATPases involved i 34.8 49 0.0011 32.8 4.3 37 85-127 2-41 (259)
281 COG0300 DltE Short-chain dehyd 34.8 59 0.0013 32.8 4.7 27 100-129 15-41 (265)
282 PRK06719 precorrin-2 dehydroge 34.7 3.6E+02 0.0078 24.7 11.0 80 473-561 67-151 (157)
283 PRK00587 hypothetical protein; 34.6 1.1E+02 0.0025 25.8 5.7 48 502-552 28-75 (99)
284 PRK07236 hypothetical protein; 34.3 40 0.00088 35.7 3.7 34 82-126 4-37 (386)
285 PRK05708 2-dehydropantoate 2-r 34.0 53 0.0011 33.8 4.4 33 84-127 2-34 (305)
286 TIGR01915 npdG NADPH-dependent 33.9 48 0.001 32.2 3.9 33 85-127 1-33 (219)
287 PRK13185 chlL protochlorophyll 33.6 47 0.001 33.2 3.9 27 100-126 10-38 (270)
288 PRK00211 sulfur relay protein 33.6 69 0.0015 28.0 4.4 40 85-127 2-41 (119)
289 COG2204 AtoC Response regulato 33.5 6.7E+02 0.014 27.6 12.7 107 433-552 6-122 (464)
290 PF03721 UDPG_MGDP_dh_N: UDP-g 33.2 57 0.0012 30.9 4.2 32 85-127 1-32 (185)
291 COG4088 Predicted nucleotide k 32.7 38 0.00082 32.9 2.7 39 85-128 1-39 (261)
292 COG1090 Predicted nucleoside-d 32.6 34 0.00074 34.6 2.5 30 100-129 4-33 (297)
293 PRK09004 FMN-binding protein M 32.5 68 0.0015 29.1 4.4 26 100-125 12-37 (146)
294 PRK08105 flavodoxin; Provision 32.5 68 0.0015 29.2 4.4 27 100-126 12-38 (149)
295 PHA02519 plasmid partition pro 32.5 54 0.0012 35.1 4.2 37 83-125 104-142 (387)
296 cd01080 NAD_bind_m-THF_DH_Cycl 32.5 4E+02 0.0087 24.8 9.6 64 420-486 31-97 (168)
297 PRK13232 nifH nitrogenase redu 32.4 46 0.001 33.5 3.6 27 100-126 9-37 (273)
298 TIGR01754 flav_RNR ribonucleot 32.1 66 0.0014 28.7 4.2 35 85-124 1-35 (140)
299 PF00205 TPP_enzyme_M: Thiamin 31.9 1.3E+02 0.0028 26.5 6.1 18 466-483 67-84 (137)
300 PLN02928 oxidoreductase family 31.9 1E+02 0.0022 32.4 6.2 45 469-513 219-268 (347)
301 COG0716 FldA Flavodoxins [Ener 31.7 58 0.0013 29.6 3.8 36 85-125 2-37 (151)
302 PRK13235 nifH nitrogenase redu 31.6 52 0.0011 33.1 3.8 27 100-126 9-37 (274)
303 PF02441 Flavoprotein: Flavopr 31.5 61 0.0013 28.5 3.8 36 85-127 1-36 (129)
304 TIGR00381 cdhD CO dehydrogenas 31.4 3E+02 0.0064 29.4 9.3 76 413-507 169-247 (389)
305 PRK13236 nitrogenase reductase 31.3 59 0.0013 33.3 4.2 39 82-127 3-43 (296)
306 KOG1192 UDP-glucuronosyl and U 31.1 3.8E+02 0.0083 29.2 10.9 129 403-552 279-422 (496)
307 PRK15438 erythronate-4-phospha 31.0 1.9E+02 0.0042 30.8 8.0 82 430-513 115-213 (378)
308 PRK14622 hypothetical protein; 30.9 1.4E+02 0.003 25.5 5.7 50 501-552 27-76 (103)
309 COG1763 MobB Molybdopterin-gua 30.8 76 0.0017 29.4 4.4 40 85-129 2-41 (161)
310 PRK13230 nitrogenase reductase 30.8 57 0.0012 32.9 3.9 27 100-126 9-37 (279)
311 PRK05653 fabG 3-ketoacyl-(acyl 30.7 71 0.0015 30.8 4.5 35 83-127 4-38 (246)
312 cd05565 PTS_IIB_lactose PTS_II 30.6 1.9E+02 0.0042 24.4 6.5 73 434-507 4-79 (99)
313 PRK06522 2-dehydropantoate 2-r 30.2 63 0.0014 32.8 4.3 32 85-127 1-32 (304)
314 TIGR03010 sulf_tusC_dsrF sulfu 30.2 78 0.0017 27.4 4.2 39 86-127 1-39 (116)
315 PRK12827 short chain dehydroge 29.9 74 0.0016 30.8 4.5 34 83-126 5-38 (249)
316 PRK11104 hemG protoporphyrinog 29.8 63 0.0014 30.4 3.8 36 85-126 1-36 (177)
317 PF00389 2-Hacid_dh: D-isomer 29.8 3.4E+02 0.0074 23.6 8.5 95 458-566 20-116 (133)
318 PRK05246 glutathione synthetas 29.5 49 0.0011 34.2 3.2 40 85-127 2-41 (316)
319 PF09140 MipZ: ATPase MipZ; I 29.4 62 0.0013 32.4 3.7 35 87-127 2-38 (261)
320 COG0569 TrkA K+ transport syst 29.4 39 0.00084 33.2 2.4 26 102-127 7-32 (225)
321 COG1830 FbaB DhnA-type fructos 29.4 2.6E+02 0.0057 28.1 8.1 122 403-552 115-259 (265)
322 PRK12921 2-dehydropantoate 2-r 29.3 62 0.0014 32.9 4.0 31 85-126 1-31 (305)
323 COG0718 Uncharacterized protei 28.9 2.7E+02 0.0058 23.9 7.0 51 500-552 30-80 (105)
324 PRK11064 wecC UDP-N-acetyl-D-m 28.9 61 0.0013 35.0 4.0 35 82-127 1-35 (415)
325 PF10649 DUF2478: Protein of u 28.7 92 0.002 28.9 4.5 40 473-512 90-135 (159)
326 PRK06753 hypothetical protein; 28.7 53 0.0011 34.4 3.4 31 85-126 1-31 (373)
327 PF00185 OTCace: Aspartate/orn 28.7 66 0.0014 29.6 3.7 37 83-128 1-37 (158)
328 PRK15409 bifunctional glyoxyla 28.4 1.8E+02 0.004 30.2 7.3 44 470-513 194-242 (323)
329 PRK10427 putative PTS system f 28.3 1.1E+02 0.0023 26.7 4.6 39 85-128 3-43 (114)
330 PF00852 Glyco_transf_10: Glyc 28.2 92 0.002 32.8 5.1 56 492-559 246-303 (349)
331 COG1052 LdhA Lactate dehydroge 28.2 1.7E+02 0.0036 30.6 6.9 44 470-513 194-242 (324)
332 TIGR00670 asp_carb_tr aspartat 28.1 4.8E+02 0.01 26.8 10.2 106 353-485 120-225 (301)
333 PRK14625 hypothetical protein; 27.7 1.7E+02 0.0036 25.3 5.6 50 501-552 28-77 (109)
334 PRK14626 hypothetical protein; 27.5 1.6E+02 0.0034 25.5 5.5 51 500-552 30-80 (110)
335 PLN02306 hydroxypyruvate reduc 27.4 1.6E+02 0.0034 31.6 6.7 45 469-513 229-278 (386)
336 PF13460 NAD_binding_10: NADH( 27.3 53 0.0011 30.3 2.8 29 100-128 4-32 (183)
337 PLN02778 3,5-epimerase/4-reduc 27.2 63 0.0014 33.0 3.6 32 83-124 8-39 (298)
338 TIGR00853 pts-lac PTS system, 27.2 1.9E+02 0.0042 24.1 5.9 73 434-508 7-83 (95)
339 COG0541 Ffh Signal recognition 27.1 8.4E+02 0.018 26.5 15.1 164 407-583 158-340 (451)
340 PRK01372 ddl D-alanine--D-alan 26.8 93 0.002 31.7 4.8 44 82-127 2-45 (304)
341 PLN02166 dTDP-glucose 4,6-dehy 26.8 66 0.0014 35.0 3.8 34 83-126 119-152 (436)
342 TIGR00036 dapB dihydrodipicoli 26.8 1.8E+02 0.0039 29.3 6.7 36 475-510 67-102 (266)
343 PRK08883 ribulose-phosphate 3- 26.8 5.5E+02 0.012 25.0 9.9 127 415-551 68-216 (220)
344 PRK13602 putative ribosomal pr 26.7 3.4E+02 0.0075 21.9 7.1 51 415-470 14-65 (82)
345 TIGR01968 minD_bact septum sit 26.7 75 0.0016 31.3 4.0 27 100-126 10-38 (261)
346 PRK06718 precorrin-2 dehydroge 26.6 5.7E+02 0.012 24.4 12.0 44 472-515 66-109 (202)
347 TIGR00288 conserved hypothetic 26.5 2.4E+02 0.0051 26.2 6.8 64 415-482 89-154 (160)
348 COG1692 Calcineurin-like phosp 26.3 2.9E+02 0.0062 27.6 7.5 83 404-486 2-91 (266)
349 PF00533 BRCT: BRCA1 C Terminu 26.2 91 0.002 24.0 3.6 66 430-507 7-72 (78)
350 PRK05920 aromatic acid decarbo 26.2 1.2E+02 0.0027 29.2 5.1 36 84-127 3-39 (204)
351 KOG3349 Predicted glycosyltran 26.1 2.1E+02 0.0046 26.4 6.1 95 404-508 6-108 (170)
352 COG3349 Uncharacterized conser 26.1 64 0.0014 35.4 3.5 32 85-127 1-32 (485)
353 PLN00198 anthocyanidin reducta 26.0 87 0.0019 32.3 4.4 37 81-127 6-42 (338)
354 PRK14494 putative molybdopteri 25.9 1.1E+02 0.0024 30.2 4.8 38 85-127 1-38 (229)
355 PRK10538 malonic semialdehyde 25.8 91 0.002 30.5 4.4 33 85-127 1-33 (248)
356 PRK13931 stationary phase surv 25.8 81 0.0018 31.8 3.9 39 85-130 1-42 (261)
357 PF13263 PHP_C: PHP-associated 25.7 33 0.00071 25.6 0.8 44 494-547 9-52 (56)
358 PLN02240 UDP-glucose 4-epimera 25.7 90 0.002 32.3 4.5 34 82-125 3-36 (352)
359 PF13407 Peripla_BP_4: Peripla 25.6 6.1E+02 0.013 24.4 12.0 37 473-509 52-89 (257)
360 cd03145 GAT1_cyanophycinase Ty 25.6 6.2E+02 0.013 24.5 11.7 95 418-512 16-129 (217)
361 PRK09358 adenosine deaminase; 25.5 7.6E+02 0.016 25.5 12.5 91 417-509 181-284 (340)
362 cd01425 RPS2 Ribosomal protein 25.5 3.8E+02 0.0083 25.4 8.4 30 476-506 127-156 (193)
363 PTZ00182 3-methyl-2-oxobutanat 25.4 4.8E+02 0.01 27.5 9.9 146 409-554 30-197 (355)
364 COG2085 Predicted dinucleotide 25.3 54 0.0012 31.8 2.5 28 101-128 7-34 (211)
365 TIGR03609 S_layer_CsaB polysac 25.3 7.1E+02 0.015 25.0 11.0 86 413-507 10-106 (298)
366 TIGR00262 trpA tryptophan synt 24.9 7E+02 0.015 24.9 14.8 119 406-529 93-231 (256)
367 PLN00141 Tic62-NAD(P)-related 24.9 1E+02 0.0022 30.3 4.5 34 84-127 17-50 (251)
368 PRK13243 glyoxylate reductase; 24.9 2.6E+02 0.0056 29.2 7.7 44 470-513 198-246 (333)
369 cd01020 TroA_b Metal binding p 24.9 3.6E+02 0.0079 26.9 8.6 86 468-565 44-130 (264)
370 PRK08163 salicylate hydroxylas 24.9 75 0.0016 33.6 3.8 33 83-126 3-35 (396)
371 PRK06703 flavodoxin; Provision 24.8 1.2E+02 0.0025 27.4 4.5 38 85-127 2-39 (151)
372 COG0512 PabA Anthranilate/para 24.7 91 0.002 29.8 3.7 33 85-127 2-34 (191)
373 PRK06849 hypothetical protein; 24.5 93 0.002 33.1 4.4 35 83-127 3-37 (389)
374 PRK10569 NAD(P)H-dependent FMN 24.5 1.4E+02 0.0029 28.5 5.1 38 85-126 1-39 (191)
375 PRK05282 (alpha)-aspartyl dipe 24.4 6.9E+02 0.015 24.6 10.6 105 404-510 4-123 (233)
376 PRK06179 short chain dehydroge 24.4 93 0.002 30.8 4.2 25 100-127 13-37 (270)
377 TIGR02622 CDP_4_6_dhtase CDP-g 24.3 1E+02 0.0022 32.1 4.5 35 83-127 3-37 (349)
378 PRK14599 trmD tRNA (guanine-N( 24.2 98 0.0021 30.2 3.9 53 86-147 80-133 (222)
379 PF13614 AAA_31: AAA domain; P 24.1 1.3E+02 0.0027 27.0 4.7 28 100-127 11-38 (157)
380 PRK05993 short chain dehydroge 24.1 97 0.0021 31.0 4.2 25 100-127 13-37 (277)
381 PTZ00124 adenosine deaminase; 24.1 8.7E+02 0.019 25.7 13.3 152 405-581 193-359 (362)
382 TIGR03029 EpsG chain length de 24.0 1.4E+02 0.0029 30.0 5.3 39 84-126 102-140 (274)
383 PRK05723 flavodoxin; Provision 24.0 1.1E+02 0.0024 27.9 4.2 36 85-125 1-36 (151)
384 COG0003 ArsA Predicted ATPase 24.0 1E+02 0.0022 32.2 4.3 75 85-178 2-79 (322)
385 PRK10430 DNA-binding transcrip 24.0 6.6E+02 0.014 24.2 11.8 106 433-549 3-120 (239)
386 PLN02572 UDP-sulfoquinovose sy 23.9 98 0.0021 33.7 4.5 33 83-125 46-78 (442)
387 PRK06180 short chain dehydroge 23.9 94 0.002 31.0 4.1 25 100-127 13-37 (277)
388 PRK13705 plasmid-partitioning 23.9 1E+02 0.0022 33.0 4.5 37 83-125 104-142 (388)
389 COG2102 Predicted ATPases of P 23.8 5.6E+02 0.012 25.1 9.0 85 403-490 61-149 (223)
390 COG2984 ABC-type uncharacteriz 23.7 3.2E+02 0.0068 28.4 7.7 99 417-520 145-255 (322)
391 PRK05693 short chain dehydroge 23.7 86 0.0019 31.2 3.8 34 85-127 1-34 (274)
392 PRK10046 dpiA two-component re 23.6 6.5E+02 0.014 24.0 12.9 109 431-551 4-123 (225)
393 PF10727 Rossmann-like: Rossma 23.6 53 0.0011 29.2 1.9 37 81-128 7-43 (127)
394 PRK02102 ornithine carbamoyltr 23.5 8.5E+02 0.018 25.4 11.1 127 315-484 100-232 (331)
395 PRK06924 short chain dehydroge 23.5 91 0.002 30.3 3.9 25 100-127 10-34 (251)
396 PRK10818 cell division inhibit 23.4 97 0.0021 30.9 4.1 28 100-127 11-40 (270)
397 PLN02206 UDP-glucuronate decar 23.4 88 0.0019 34.1 4.0 33 83-125 118-150 (442)
398 PRK14627 hypothetical protein; 23.3 2.2E+02 0.0048 24.1 5.5 49 502-552 28-76 (100)
399 PRK14629 hypothetical protein; 23.2 1.9E+02 0.0042 24.5 5.1 50 501-552 29-78 (99)
400 PRK09140 2-dehydro-3-deoxy-6-p 23.1 4.1E+02 0.0088 25.6 8.1 109 404-528 63-182 (206)
401 TIGR01470 cysG_Nterm siroheme 23.0 6.8E+02 0.015 24.0 11.7 83 424-515 25-109 (205)
402 PRK06719 precorrin-2 dehydroge 22.9 63 0.0014 29.7 2.4 34 83-127 12-45 (157)
403 PRK14624 hypothetical protein; 22.9 2.2E+02 0.0047 24.9 5.5 50 501-552 32-81 (115)
404 PRK10446 ribosomal protein S6 22.9 98 0.0021 31.6 4.0 35 85-127 1-35 (300)
405 COG1927 Mtd Coenzyme F420-depe 22.8 6.8E+02 0.015 24.3 9.1 102 405-524 7-114 (277)
406 TIGR03219 salicylate_mono sali 22.8 75 0.0016 34.0 3.3 30 85-125 1-31 (414)
407 TIGR01426 MGT glycosyltransfer 22.7 61 0.0013 34.4 2.5 21 107-127 12-32 (392)
408 COG0796 MurI Glutamate racemas 22.7 6.8E+02 0.015 25.3 9.7 31 228-265 68-98 (269)
409 PHA02518 ParA-like protein; Pr 22.6 95 0.0021 29.4 3.7 33 86-124 1-35 (211)
410 PRK05583 ribosomal protein L7A 22.6 4.8E+02 0.01 22.2 8.0 75 416-495 21-96 (104)
411 PRK00153 hypothetical protein; 22.4 2.4E+02 0.0053 23.9 5.7 51 500-552 28-78 (104)
412 cd02071 MM_CoA_mut_B12_BD meth 22.4 2.6E+02 0.0056 24.2 6.1 39 404-442 53-92 (122)
413 TIGR00715 precor6x_red precorr 22.3 1.3E+02 0.0028 30.2 4.6 75 458-550 177-255 (256)
414 PRK14569 D-alanyl-alanine synt 22.3 1.4E+02 0.0031 30.3 5.1 43 82-126 1-43 (296)
415 PF00070 Pyr_redox: Pyridine n 22.2 80 0.0017 25.0 2.6 24 104-127 8-31 (80)
416 PRK09730 putative NAD(P)-bindi 22.1 95 0.0021 30.0 3.7 34 85-127 1-34 (247)
417 COG0655 WrbA Multimeric flavod 22.1 1.5E+02 0.0033 28.4 5.0 40 85-127 1-40 (207)
418 TIGR00959 ffh signal recogniti 21.9 1E+03 0.022 25.9 11.6 82 489-583 255-340 (428)
419 KOG1192 UDP-glucuronosyl and U 21.9 1.2E+02 0.0025 33.3 4.7 29 100-128 15-43 (496)
420 TIGR03018 pepcterm_TyrKin exop 21.9 1.6E+02 0.0035 28.1 5.1 40 84-127 34-74 (207)
421 PLN03007 UDP-glucosyltransfera 21.7 1.2E+02 0.0027 33.4 4.7 38 84-127 5-42 (482)
422 PRK06182 short chain dehydroge 21.6 1.4E+02 0.0031 29.5 4.9 25 100-127 12-36 (273)
423 PRK07538 hypothetical protein; 21.6 82 0.0018 33.7 3.3 31 85-126 1-31 (413)
424 cd05564 PTS_IIB_chitobiose_lic 21.6 3.4E+02 0.0074 22.5 6.4 73 434-508 3-79 (96)
425 PF12683 DUF3798: Protein of u 21.6 5.6E+02 0.012 25.9 8.7 99 387-492 22-121 (275)
426 PLN02208 glycosyltransferase f 21.5 1.4E+02 0.003 32.6 5.0 39 83-127 3-41 (442)
427 PRK00170 azoreductase; Reviewe 21.4 1.5E+02 0.0032 28.0 4.8 39 85-126 2-43 (201)
428 PRK05568 flavodoxin; Provision 21.3 1.6E+02 0.0035 26.0 4.7 28 100-127 12-39 (142)
429 KOG1429 dTDP-glucose 4-6-dehyd 21.3 1.4E+02 0.0029 30.6 4.4 35 81-125 24-58 (350)
430 PRK08340 glucose-1-dehydrogena 21.1 1.2E+02 0.0027 29.7 4.3 33 85-127 1-33 (259)
431 TIGR01012 Sa_S2_E_A ribosomal 21.1 3.9E+02 0.0084 25.7 7.3 99 414-515 43-147 (196)
432 COG0214 SNZ1 Pyridoxine biosyn 21.0 3.8E+02 0.0082 26.5 7.1 72 488-564 194-272 (296)
433 PRK05884 short chain dehydroge 20.8 1.4E+02 0.003 28.8 4.5 33 85-127 1-33 (223)
434 PRK11790 D-3-phosphoglycerate 20.7 2E+02 0.0042 31.1 5.9 45 469-513 196-245 (409)
435 PRK13304 L-aspartate dehydroge 20.7 2.8E+02 0.0061 27.8 6.7 72 431-512 26-97 (265)
436 PF07015 VirC1: VirC1 protein; 20.4 1.2E+02 0.0026 30.0 3.8 28 100-127 10-39 (231)
437 TIGR00041 DTMP_kinase thymidyl 20.4 1.6E+02 0.0035 27.5 4.8 37 83-125 2-38 (195)
438 COG2894 MinD Septum formation 20.2 1.1E+02 0.0025 30.0 3.5 36 86-127 3-40 (272)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.6e-68 Score=594.00 Aligned_cols=462 Identities=33% Similarity=0.564 Sum_probs=389.1
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCc-----ceEEEEEeCCeeeEEEEEE
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT-----DVVIELKVGDKIEKVRFFH 156 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 156 (586)
.++|||+||++++.|+.++||++++++.|+++|+++||+|.||+|.|+.....+.. .......+++.....++++
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 56899999999999999999999999999999999999999999999865422111 1122223443344577888
Q ss_pred EEeCCceEEEEcC--c-cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEE
Q 007873 157 CHKRGVDRVFVDH--P-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV 233 (586)
Q Consensus 157 ~~~~gv~~~~v~~--~-~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~ 233 (586)
...+||+++|++. | .|+.+ ..+|+ +.|+..||.+||+++++++..+++ +|| |||
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R------~~iYg------~~Dn~~RF~~FsrAaLe~~~~~~~----------~PD-IIH 615 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWR------AQYYG------EHDDFKRFSYFSRAALELLYQSGK----------KPD-IIH 615 (977)
T ss_pred EEECCeeEEEEecCCchhccCC------CCCCC------CccHHHHHHHHHHHHHHHHHhcCC----------CCC-EEE
Confidence 8889999999984 3 26665 57886 789999999999999999987753 699 999
Q ss_pred ecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHH
Q 007873 234 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAG 313 (586)
Q Consensus 234 ~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
+|||++++++.++...+...+ +.++|+|+||||+.|||.|+...+..++++....... ++.... +...+++++.+
T Consensus 616 ~HDW~TaLV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~---d~le~~-~~~~iN~LK~G 690 (977)
T PLN02939 616 CHDWQTAFVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRP---DRMQDN-AHGRINVVKGA 690 (977)
T ss_pred ECCccHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccCh---hhhhhc-cCCchHHHHHH
Confidence 999999998554444454444 4689999999999999999888888888887664322 121111 23468999999
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhh--ccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (586)
+..||.|+|||+.+++++.. .+|..++.+++ ..++.+|+||+|++.|+|.++++|..+|++.++ +.|..++.+++
T Consensus 691 Iv~AD~VtTVSptYA~EI~t--e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl-~GK~~nK~aLR 767 (977)
T PLN02939 691 IVYSNIVTTVSPTYAQEVRS--EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDL-QGKAANKAALR 767 (977)
T ss_pred HHhCCeeEeeeHHHHHHHHH--HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhh-hhhhhhhHHHH
Confidence 99999999999999999986 46666666654 469999999999999999999999999999986 68999999999
Q ss_pred HHhCCCCC-CCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC-hhhHHHHHHHHHHCC--CceEEEeccCh
Q 007873 392 AEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYP--EKARGVAKFNI 467 (586)
Q Consensus 392 ~~~gl~~~-~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~~l~~~~~--~~v~~~~~~~~ 467 (586)
+++|++.+ ++.|+|+|+||+.++||++.|++|+..+.+++++|+|+|+|+ ..+++.+++++.+++ +++.+.+.++.
T Consensus 768 kelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de 847 (977)
T PLN02939 768 KQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDE 847 (977)
T ss_pred HHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCH
Confidence 99999864 567999999999999999999999998877789999999996 456788888888875 46888888998
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc---------CcceEEEccccccccCCCCCC
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---------GFTGFQMGSFSVDCEAVDPVD 538 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~---------g~~G~~~~~~~~~~~~v~~~d 538 (586)
...+.+|++||++|+||++|+||++++|||+||+|||++++||+.|+|.+ +.|||+| ++.|
T Consensus 848 ~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf----------~~~D 917 (977)
T PLN02939 848 ALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF----------LTPD 917 (977)
T ss_pred HHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe----------cCCC
Confidence 88899999999999999999999999999999999999999999999975 5799998 9999
Q ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007873 539 VAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 539 ~~~la~~I~~ll~~~--~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
+++|+++|.+++..+ .++.+++|+++++.++|||+.++++|++.+.
T Consensus 918 ~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dFSWe~~A~qYeeLY~ 965 (977)
T PLN02939 918 EQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDFSWDSSASQYEELYQ 965 (977)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999998732 2788999999999999999999999998653
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=5.7e-67 Score=570.36 Aligned_cols=459 Identities=38% Similarity=0.623 Sum_probs=383.7
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcce-EEEEE--eCCeeeEEEEEEEE
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDV-VIELK--VGDKIEKVRFFHCH 158 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 158 (586)
|++|||+||++|+.|+.|+||++++++.|+++|+++||+|.|+.|.|++..+...... ...+. .+. ..++++..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 77 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGG---PARLLAAR 77 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCc---eEEEEEEE
Confidence 5789999999999999999999999999999999999999999999988754332221 12222 222 45677788
Q ss_pred eCCceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCc
Q 007873 159 KRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH 238 (586)
Q Consensus 159 ~~gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~ 238 (586)
.+|++++++++|.|+.| ...+|+...|.||.||.+||.+||++++++++.+.. .++|| |||+|||+
T Consensus 78 ~~~v~~~~~~~~~~f~r-----~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~--------~~~pD-IiH~Hdw~ 143 (485)
T PRK14099 78 AGGLDLFVLDAPHLYDR-----PGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVP--------GFVPD-IVHAHDWQ 143 (485)
T ss_pred eCCceEEEEeChHhhCC-----CCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhcc--------CCCCC-EEEECCcH
Confidence 89999999999999886 134898878889999999999999999998876521 14799 99999999
Q ss_pred cchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCC
Q 007873 239 TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 318 (586)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 318 (586)
++++|.+++...+ .++|+|+|+||+.+|+.|+...+..++++..+... ++.. +...+++++.++..||
T Consensus 144 ~~l~~~~l~~~~~-----~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~k~~i~~ad 211 (485)
T PRK14099 144 AGLAPAYLHYSGR-----PAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSL----DGVE---YYGGIGYLKAGLQLAD 211 (485)
T ss_pred HHHHHHHHHhCCC-----CCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCc----hhhh---hCCCccHHHHHHHhcC
Confidence 9999998874321 47899999999999999887777777777655331 1110 1234578999999999
Q ss_pred EEEEeCHHHHHHHhcCccCCCcchhhhh--ccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCC
Q 007873 319 MVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL 396 (586)
Q Consensus 319 ~vitvS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl 396 (586)
.|+|+|+.+++++.. ..+|..++.+++ ..++.+|+||+|++.|+|.+++++..+|+..++ +.+..++..+++++|+
T Consensus 212 ~vitVS~~~a~ei~~-~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl 289 (485)
T PRK14099 212 RITTVSPTYALEIQG-PEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETL-AARAANKAALQARFGL 289 (485)
T ss_pred eeeecChhHHHHHhc-ccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHH-HhHHHhHHHHHHHcCC
Confidence 999999999999985 234555444443 358999999999999999999899999998875 6777888999999999
Q ss_pred CCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh
Q 007873 397 PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 397 ~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~ 476 (586)
+.+++.++|+++||+.++||++.|++|++.+.+.+++|+|+|+|+..+++.++++..++++++.....++.+..+.++++
T Consensus 290 ~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~ 369 (485)
T PRK14099 290 DPDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAG 369 (485)
T ss_pred CcccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhc
Confidence 87667799999999999999999999999997778999999999877888999998888777755666766666555678
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccC---------cceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 477 aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
||++++||++|+||++++|||+||+|||++++||+.|+|.++ .+|+++ ++.|+++|+++|.
T Consensus 370 aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~----------~~~d~~~La~ai~ 439 (485)
T PRK14099 370 ADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF----------SPVTADALAAALR 439 (485)
T ss_pred CCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe----------CCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 689998 9999999999999
Q ss_pred H---HHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 548 R---ALATYGTQALAEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 548 ~---ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
+ ++++ ++.+++|++++++++|||+.++++|++.+
T Consensus 440 ~a~~l~~d--~~~~~~l~~~~~~~~fSw~~~a~~y~~lY 476 (485)
T PRK14099 440 KTAALFAD--PVAWRRLQRNGMTTDVSWRNPAQHYAALY 476 (485)
T ss_pred HHHHHhcC--HHHHHHHHHHhhhhcCChHHHHHHHHHHH
Confidence 8 4555 78899999999999999999999999865
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=2.4e-66 Score=566.06 Aligned_cols=464 Identities=30% Similarity=0.577 Sum_probs=387.7
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCcccc-CCc-ce--E--EEEEeCCeeeEEEEEEE
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDA-WDT-DV--V--IELKVGDKIEKVRFFHC 157 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~-~~~-~~--~--~~~~~~~~~~~~~~~~~ 157 (586)
.|||+||++|+.|+.|+||++++++.|+++|+++||+|.|+.|.|.+..+. +.. .. . ..+.++......+..+.
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 399999999999999999999999999999999999999999999877543 111 11 1 22233332222222223
Q ss_pred EeC--CceEEEEcCccccccccCCCCCcccCCC-CCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEe
Q 007873 158 HKR--GVDRVFVDHPWFLAKVWGKTQSKIYGPR-TGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVA 234 (586)
Q Consensus 158 ~~~--gv~~~~v~~~~~~~~~w~~~~~~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~ 234 (586)
..+ |++++++++|.|+.| ..+|+.. .|.||.||..||.+||++++++++.+.+ +|| |||+
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r------~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~----------~pD-iiH~ 147 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKR------NGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGW----------KPD-IIHC 147 (489)
T ss_pred cccCCCceEEEEeCHHHcCC------CCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCC----------CCC-EEEe
Confidence 333 699999999999987 5799876 6789999999999999999999987653 699 9999
Q ss_pred cCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHh
Q 007873 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGI 314 (586)
Q Consensus 235 h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (586)
|||+++++|.+++..++....+.++|+|+|+||..+||.++...+..+ +|..+...+. .....+++++.++
T Consensus 148 hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~~~~--------~~~~~~n~lk~~i 218 (489)
T PRK14098 148 HDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCSGLH--------REGDEVNMLYTGV 218 (489)
T ss_pred cCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhhhhh--------hcCCcccHHHHHH
Confidence 999999999999877654444568999999999999998876555433 4443321110 0123578999999
Q ss_pred hcCCEEEEeCHHHHHHHhcCccCCCcchhhhh--ccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 315 ~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
..||.|+|+|+.+++++.....+|..++.+++ ..++.+|+||+|++.|+|.+++.+..+|+..++ +.|..++..+++
T Consensus 219 ~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~-~~k~~~k~~l~~ 297 (489)
T PRK14098 219 EHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERL-DGKLENKKALLE 297 (489)
T ss_pred HhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchh-hhHHHHHHHHHH
Confidence 99999999999999999852234444555443 369999999999999999998888899998875 577788999999
Q ss_pred HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHH
Q 007873 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ 472 (586)
++|++.+++.++|+++||+.++||++.|++|++++.+++++|+|+|+|+..+++.+++++.++++++.+.+.++.++++.
T Consensus 298 ~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 298 EVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHL 377 (489)
T ss_pred HhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHH
Confidence 99999888889999999999999999999999999877999999999987788899999998888899999999999999
Q ss_pred HHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc----CcceEEEccccccccCCCCCCHHHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~----g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ 548 (586)
+|++||++++||++|+||++++|||+||+|||++++||+.|++.+ +.+|+++ ++.|+++|+++|.+
T Consensus 378 ~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~----------~~~d~~~la~ai~~ 447 (489)
T PRK14098 378 AIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIF----------HDYTPEALVAKLGE 447 (489)
T ss_pred HHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEe----------CCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999874 6899998 99999999999999
Q ss_pred HHHhc-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007873 549 ALATY-GTQALAEMMKNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 549 ll~~~-~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
+++.+ .++.++++++++++++|||+.++++|++.+.
T Consensus 448 ~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~y~~lY~ 484 (489)
T PRK14098 448 ALALYHDEERWEELVLEAMERDFSWKNSAEEYAQLYR 484 (489)
T ss_pred HHHHHcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 87532 2678899999999999999999999998654
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=5.3e-63 Score=541.12 Aligned_cols=458 Identities=45% Similarity=0.752 Sum_probs=391.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCc----ceEEEEEeCCeeeEEEEEEEEeC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT----DVVIELKVGDKIEKVRFFHCHKR 160 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 160 (586)
|||++|++|++|+.++||+++++..|+++|+++||+|+|++|.|++..+.+.. .....+.+++....+++++...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999876654332 23345566777778888888899
Q ss_pred CceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccc
Q 007873 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (586)
Q Consensus 161 gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~ 240 (586)
|+++++++++.++.+. ..+|++ ||.|+..||.+|+++++++++.+.. +|| |||+|+|+++
T Consensus 81 ~v~~~~i~~~~~~~r~-----~~~y~~----~~~d~~~r~~~f~~a~~~~~~~~~~----------~~D-iiH~hdw~~~ 140 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRP-----GGIYGD----DYPDNAERFAFFSRAAAELLSGLGW----------QPD-VVHAHDWHTA 140 (473)
T ss_pred CceEEEEECHHHcCCC-----CCCCCC----CCCCHHHHHHHHHHHHHHHHHhcCC----------CCC-EEEECCcHHH
Confidence 9999999999877651 247864 6999999999999999999887543 699 9999999999
Q ss_pred hHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEE
Q 007873 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (586)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 320 (586)
+++.+++..++. .++|+|+|+|+..+++.++...+..++++..+.... ... +...+++++.++..||.|
T Consensus 141 ~~~~~l~~~~~~----~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~k~~~~~ad~v 209 (473)
T TIGR02095 141 LVPALLKAVYRP----NPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHME----GLE---FYGRVNFLKGGIVYADRV 209 (473)
T ss_pred HHHHHHHhhccC----CCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCch----hhh---cCCchHHHHHHHHhCCcC
Confidence 999999877521 148999999999999988876666667765543211 111 112578999999999999
Q ss_pred EEeCHHHHHHHhcCccCCCcchhhhh--ccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCC
Q 007873 321 LTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (586)
Q Consensus 321 itvS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (586)
++||+.+++++... .+|..++.+++ +.++.+|+||+|.+.|+|..+.++..+|+..+. ..+..++..+++++|++.
T Consensus 210 ~tVS~~~~~ei~~~-~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~ 287 (473)
T TIGR02095 210 TTVSPTYAREILTP-EFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDL-AGKAENKEALQEELGLPV 287 (473)
T ss_pred eecCHhHHHHhcCC-cCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccch-hhhhhhHHHHHHHcCCCc
Confidence 99999999998852 35555544332 469999999999999999988888888988764 466777889999999987
Q ss_pred CCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
+++.++|+|+||+.++||++.+++|++++.+.+++|+|+|+|++.+++.++++..+++.++.+.+.++.++++.++++||
T Consensus 288 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD 367 (473)
T TIGR02095 288 DDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGAD 367 (473)
T ss_pred cCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 66789999999999999999999999999877899999999986688899999988888888888999999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccC------cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g------~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
++++||++|+||++++|||+||+|||++++||+.|+|.++ .+|+++ ++.|+++|+++|.+++..
T Consensus 368 v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 368 FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLF----------EEYDPGALLAALSRALRL 437 (473)
T ss_pred EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 999998 999999999999999982
Q ss_pred c--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007873 553 Y--GTQALAEMMKNGMAQDLSWKVSIGTVQEEDSL 585 (586)
Q Consensus 553 ~--~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~ 585 (586)
+ .++.+++|++++++++|||+.++++|++.+.-
T Consensus 438 ~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 438 YRQDPSLWEALQKNAMSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HhcCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 2 27889999999999999999999999987653
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=7.1e-62 Score=530.60 Aligned_cols=451 Identities=42% Similarity=0.685 Sum_probs=372.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCc-ceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT-DVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
|||+||+.+++|+.++||+++++..|+++|+++||+|+|++|.|+...+.... ....++ + ...+...+...+|++
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~gv~ 76 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRL---D-LFTVLFGHLEGDGVP 76 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEe---e-eEEEEEEeEEcCCce
Confidence 89999999999999999999999999999999999999999998765433211 111111 0 112222223458999
Q ss_pred EEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH
Q 007873 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (586)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~ 243 (586)
+++++++.++.+ ..+|+ |.|+..||.+|++++++.++.++. +|| |||+|+|++++++
T Consensus 77 v~~v~~~~~~~~------~~~y~------~~d~~~r~~~f~~~~~~~~~~~~~----------~pD-iiH~h~w~~~~~~ 133 (466)
T PRK00654 77 VYLIDAPHLFDR------PSGYG------YPDNGERFAFFSWAAAEFAEGLDP----------RPD-IVHAHDWHTGLIP 133 (466)
T ss_pred EEEEeCHHHcCC------CCCCC------CcChHHHHHHHHHHHHHHHHhcCC----------CCc-eEEECCcHHHHHH
Confidence 999999988876 46775 789999999999999999987653 599 9999999999999
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
.+++..+ ..+ +.++|+|+|+|+..+++.+....+..++++..+.. .+... +....++++.++..||.|+|+
T Consensus 134 ~~l~~~~-~~~-~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~ad~vitv 204 (466)
T PRK00654 134 ALLKEKY-WRG-YPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFH----LEGLE---FYGQISFLKAGLYYADRVTTV 204 (466)
T ss_pred HHHHHhh-hcc-CCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC----chhhh---cCCcccHHHHHHHhcCcCeee
Confidence 9998765 222 35799999999999999887766666777665432 11110 112468899999999999999
Q ss_pred CHHHHHHHhcCccCCCcchhhh--hccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCC
Q 007873 324 SPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (586)
|+.+++++.. ..+|..++..+ +..++.+|+||+|.+.|+|.+++.+...|+..+. +.+..++..+++++|++. ++
T Consensus 205 S~~~~~ei~~-~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~-~~ 281 (466)
T PRK00654 205 SPTYAREITT-PEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDL-EGKAENKRALQERFGLPD-DD 281 (466)
T ss_pred CHHHHHHhcc-ccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhh-hchHHHHHHHHHHhCCCC-CC
Confidence 9999999875 22343333322 2458999999999999999988888888988765 577778899999999973 35
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEE
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
.++|+|+||+.++||++.|++|++++.+++++|+|+|+|+..+++.+++++.+++.++.....++.++.+.++++||+++
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v 361 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFL 361 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEE
Confidence 68999999999999999999999999777999999999987678899999999887777777788788889999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccC------cceEEEccccccccCCCCCCHHHHHHHHHHHHHhc-C
Q 007873 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-G 554 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g------~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~-~ 554 (586)
+||++|+||++++|||+||+|||++++||+.|++.++ .+|+++ ++.|+++|+++|.++++.+ .
T Consensus 362 ~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv----------~~~d~~~la~~i~~~l~~~~~ 431 (466)
T PRK00654 362 MPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVF----------DDFNAEDLLRALRRALELYRQ 431 (466)
T ss_pred eCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEe----------CCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988 899998 9999999999999998743 2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007873 555 TQALAEMMKNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 555 ~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
++.+.+|++++++++|||+.++++|++.+.
T Consensus 432 ~~~~~~~~~~~~~~~fsw~~~a~~~~~lY~ 461 (466)
T PRK00654 432 PPLWRALQRQAMAQDFSWDKSAEEYLELYR 461 (466)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 567889999999999999999999998653
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=1.8e-61 Score=548.86 Aligned_cols=432 Identities=33% Similarity=0.554 Sum_probs=361.1
Q ss_pred eeeecCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEE
Q 007873 77 LMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFH 156 (586)
Q Consensus 77 ~~~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (586)
+.....++|||+||+.+++|+.++||+++++..|+++|+++||+|.|++|.|+...............+......+++++
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 659 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWF 659 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEE
Confidence 44455678999999999999999999999999999999999999999999987643321111111122222223467788
Q ss_pred EEeCCceEEEEcCcc-ccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEec
Q 007873 157 CHKRGVDRVFVDHPW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAN 235 (586)
Q Consensus 157 ~~~~gv~~~~v~~~~-~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h 235 (586)
...+|+++++++++. ++.+ ..+|+ +.|+..||.+||+++++.++.+.+ +|| |||+|
T Consensus 660 ~~~~GV~vyfl~~~~~~F~r------~~~Yg------~~Dd~~RF~~F~~Aale~l~~~~~----------~PD-IIHaH 716 (1036)
T PLN02316 660 GKVEGLSVYFLEPQNGMFWA------GCVYG------CRNDGERFGFFCHAALEFLLQSGF----------HPD-IIHCH 716 (1036)
T ss_pred EEECCcEEEEEeccccccCC------CCCCC------chhHHHHHHHHHHHHHHHHHhcCC----------CCC-EEEEC
Confidence 888999999999763 5554 35675 789999999999999999987653 699 99999
Q ss_pred CCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhh
Q 007873 236 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL 315 (586)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
||++++++.+++..++..+ +.++|+|+|+|++.++. +.++.++.
T Consensus 717 DW~talva~llk~~~~~~~-~~~~p~V~TiHnl~~~~-----------------------------------n~lk~~l~ 760 (1036)
T PLN02316 717 DWSSAPVAWLFKDHYAHYG-LSKARVVFTIHNLEFGA-----------------------------------NHIGKAMA 760 (1036)
T ss_pred CChHHHHHHHHHHhhhhhc-cCCCCEEEEeCCcccch-----------------------------------hHHHHHHH
Confidence 9999999999988765444 36799999999875421 33567789
Q ss_pred cCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhC
Q 007873 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (586)
Q Consensus 316 ~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 395 (586)
.||.|+|||+.+++++... .++.. +..++.+|+||||++.|+|.++++++.+|++.++.+.|..++..+|+++|
T Consensus 761 ~AD~ViTVS~tya~EI~~~--~~l~~----~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lG 834 (1036)
T PLN02316 761 YADKATTVSPTYSREVSGN--SAIAP----HLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLG 834 (1036)
T ss_pred HCCEEEeCCHHHHHHHHhc--cCccc----ccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhC
Confidence 9999999999999999852 22221 12489999999999999999999999999999888888889999999999
Q ss_pred CCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC-hhhHHHHHHHHHHC----CCceEEEeccChHHH
Q 007873 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILY----PEKARGVAKFNIPLA 470 (586)
Q Consensus 396 l~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~~l~~~~----~~~v~~~~~~~~~~~ 470 (586)
++. .+.|+|+|+|||.++||++.|++|++.+.+.+++|+|+|+|+ ..++..+++++.++ ++++.+.+.++..+.
T Consensus 835 L~~-~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~la 913 (1036)
T PLN02316 835 LKQ-ADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLS 913 (1036)
T ss_pred CCc-ccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHH
Confidence 983 356899999999999999999999999877789999999995 44677788888754 457888888888888
Q ss_pred HHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccC-------------cceEEEccccccccCCCCC
Q 007873 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-------------FTGFQMGSFSVDCEAVDPV 537 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g-------------~~G~~~~~~~~~~~~v~~~ 537 (586)
+.+|++||++|+||++|+||++++|||+||+|||++++||++|+|.++ .|||+| ++.
T Consensus 914 h~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf----------~~~ 983 (1036)
T PLN02316 914 HLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSF----------DGA 983 (1036)
T ss_pred HHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEe----------CCC
Confidence 899999999999999999999999999999999999999999999884 699998 999
Q ss_pred CHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007873 538 DVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 538 d~~~la~~I~~ll~~~--~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
|+++|+.+|.+++.++ .+..+.++++++|.++|||+.++++|++.+.
T Consensus 984 d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 984 DAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 9999999999999874 2345688888999999999999999998763
No 7
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=4.6e-59 Score=510.63 Aligned_cols=462 Identities=44% Similarity=0.737 Sum_probs=386.7
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEE----EEEeCCeeeEEEEEEEEeCC
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVI----ELKVGDKIEKVRFFHCHKRG 161 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g 161 (586)
||+||++|++|+.++||+++++..|+++|+++||+|+|++|.|+...+.+...... .+..+.....++..+...+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 79999999999999999999999999999999999999999998766554333222 23455566678888888999
Q ss_pred ceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccch
Q 007873 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (586)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~ 241 (586)
++++++++|.++.+ ..+| +..+.+|.++..+|.+|+++++++++.+.. +|| |||+|||++++
T Consensus 81 v~~~~l~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~----------~pD-viH~hd~~t~~ 142 (476)
T cd03791 81 VPVYFLDNPDYFDR------PGLY-DDSGYDYEDNAERFALFSRAALELLRRLGW----------KPD-IIHCHDWHTGL 142 (476)
T ss_pred ceEEEEcChHHcCC------CCCC-CccCCCCccHHHHHHHHHHHHHHHHHhcCC----------CCc-EEEECchHHHH
Confidence 99999999998876 3444 455667999999999999999999987643 599 99999999999
Q ss_pred HHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEE
Q 007873 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (586)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 321 (586)
++.+++..++. ..+.++|+|+|+|+..+++.++...+...+++.... ...+. ..+....++++.++..||.|+
T Consensus 143 ~~~~l~~~~~~-~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~ad~v~ 215 (476)
T cd03791 143 VPALLKEKYAD-PFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEEL---FHIDG---LEFYGQVNFLKAGIVYADAVT 215 (476)
T ss_pred HHHHHHHhhcc-ccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccch---hhhcc---cccCCcccHHHHHHHhcCcCe
Confidence 99999887543 334589999999999998877765554443332100 01111 112235688899999999999
Q ss_pred EeCHHHHHHHhcCccCCCcchhhhh--ccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCC
Q 007873 322 TVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (586)
Q Consensus 322 tvS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (586)
++|+.+++++.. ..+|..++.+++ ..++.+|+||+|.+.|.|..+..+...|+... ...+...+..+++++|++.+
T Consensus 216 ~vS~~~~~~i~~-~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~-~~~~~~~k~~l~~~~g~~~~ 293 (476)
T cd03791 216 TVSPTYAREILT-PEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADD-LEGKAENKAALQEELGLPVD 293 (476)
T ss_pred ecCHhHHHHhCC-CCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccc-cccHHHHHHHHHHHcCCCcC
Confidence 999999999885 234444444443 36999999999999999998888888888543 46788889999999999866
Q ss_pred CCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
++.++|+|+||+.++||++.+++|++++.+.+++|+|+|+|+..+++.++++..++++++.+...++.++.+.++++||+
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv 373 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADF 373 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCE
Confidence 77899999999999999999999999998777999999999877888899988887778988888998888899999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCc------ceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF------TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~------~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
+++||++|+||++++|||+||+|||++++||+.|++.++. +|+++ ++.|+++++++|.++++.+
T Consensus 374 ~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~----------~~~~~~~l~~~i~~~l~~~ 443 (476)
T cd03791 374 FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVF----------EGYNADALLAALRRALALY 443 (476)
T ss_pred EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEe----------CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 99998 9999999999999998754
Q ss_pred -CHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007873 554 -GTQALAEMMKNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 554 -~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
.++.+.++++++++++|||+.++++|++.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 444 RDPEAWRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred cCHHHHHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 2678899999999999999999999998763
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-58 Score=486.82 Aligned_cols=459 Identities=39% Similarity=0.626 Sum_probs=393.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcc----eEEEEEeCCeeeEEEEEEEEeC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD----VVIELKVGDKIEKVRFFHCHKR 160 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 160 (586)
|||++++.++.|+.++||++++++.|+++|++.||+|.|+.|.|+..++.+... ....+..+.........+..+.
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 899999999999999999999999999999999999999999998666655543 1222233333322333333323
Q ss_pred -CceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCcc
Q 007873 161 -GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT 239 (586)
Q Consensus 161 -gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~ 239 (586)
|++.+++++|.++.|. ...+.++.||.+||..|++++++.+...... +.|| |||+|||++
T Consensus 81 ~~v~~~lid~~~~f~r~----------~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~--------~~pD-IvH~hDWqt 141 (487)
T COG0297 81 GGVDLYLIDNPALFKRP----------DSTLYGYYDNAERFAFFSLAAAELAPLGLIS--------WLPD-IVHAHDWQT 141 (487)
T ss_pred CCCcEEEecChhhcCcc----------ccccCCCCcHHHHHHHHHHHHHHHhhhcCCC--------CCCC-EEEeecHHH
Confidence 3999999999888751 1233349999999999999999988665410 3599 999999999
Q ss_pred chHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCE
Q 007873 240 SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDM 319 (586)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 319 (586)
+++|.+++..++. +..+|.||||||+.+||.|....+..++||..+...+ ....+ ...+++|.++..||.
T Consensus 142 ~L~~~~lk~~~~~---~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~-~l~~~------~~~~~lK~gi~~ad~ 211 (487)
T COG0297 142 GLLPAYLKQRYRS---GYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASF-GLEFY------GQISFLKGGLYYADA 211 (487)
T ss_pred HHHHHHHhhcccc---cccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhc-eeeec------CcchhhhhhheeccE
Confidence 9999999986411 2589999999999999999977778899998776622 22211 246889999999999
Q ss_pred EEEeCHHHHHHHhcCccCCCcchhhhhc--cCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCC
Q 007873 320 VLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP 397 (586)
Q Consensus 320 vitvS~~~~~~l~~~~~~g~~~~~~~~~--~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~ 397 (586)
|.|||+.+++++. ..++|..++..++. .++++|.||+|...|+|.++.++...|+..+.. .+..++..+++++||+
T Consensus 212 vttVSptYa~Ei~-t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~-~k~~nk~~L~~~~gL~ 289 (487)
T COG0297 212 VTTVSPTYAGEIY-TPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLP-AKAENKVALQERLGLD 289 (487)
T ss_pred EEEECHHHHHhhc-cccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchh-hhHHHHHHHHHHhCCC
Confidence 9999999999999 46788777776654 688999999999999999999999999998875 5999999999999999
Q ss_pred CCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 398 VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 398 ~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
.+.+.|++.++||+..|||+|.+++++..+.+..++++++|+|+..++..+..++..+++++.....|+.+..+.++++|
T Consensus 290 ~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~aga 369 (487)
T COG0297 290 VDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGA 369 (487)
T ss_pred CCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcC
Confidence 88888999999999999999999999999998889999999999899999999999999989999999999999999999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc--------CcceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--------g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
|++++||++||||+++++||++|+++|+..+||++|+|.+ ..||++| .+.|+++|+.+|.++
T Consensus 370 D~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f----------~~~~~~~l~~al~rA 439 (487)
T COG0297 370 DVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLF----------LQTNPDHLANALRRA 439 (487)
T ss_pred CEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEE----------ecCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 5899999 888999999999999
Q ss_pred HHhcC-HHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007873 550 LATYG-TQA-LAEMMKNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 550 l~~~~-~~~-~~~~~~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
+.-+. ++. ++.+..++|..+|||+..+++|.+-+.
T Consensus 440 ~~~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~ 476 (487)
T COG0297 440 LVLYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYK 476 (487)
T ss_pred HHHhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHH
Confidence 98763 344 899999999999999999999998553
No 9
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=2.5e-40 Score=375.37 Aligned_cols=447 Identities=18% Similarity=0.150 Sum_probs=285.9
Q ss_pred CCCceEEEEeccccC---------ccccchHHHHhhhhHHHHHhCC--CeEEEEEecCCCccccCCcceEEEEEeCCe-e
Q 007873 82 GVGLNILFVGTEVAP---------WSKTGGLGDVLGGLPPALAANG--HRVMTIAPRYDQYKDAWDTDVVIELKVGDK-I 149 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P---------~~~~GG~~~~~~~L~~~L~~~G--h~V~vvt~~~~~~~~~~~~~~~~~~~~~~~-~ 149 (586)
.++|.|++|+..-.| ...+||...|+.+|+++|+++| |+|.++|.....-...|+.....+.. +.. .
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~-~~~~~ 245 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEML-TPRSS 245 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccc-ccccc
Confidence 458999999854222 2358999999999999999998 89999998743211112222121110 000 0
Q ss_pred eEEEEEEEEeCCceEEEEcCc---cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCC--C
Q 007873 150 EKVRFFHCHKRGVDRVFVDHP---WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFS--G 224 (586)
Q Consensus 150 ~~~~~~~~~~~gv~~~~v~~~---~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 224 (586)
+.........+|+.++.++-. .++.+ ..-+-....|...++..++.+....-..+. .
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~K------------------e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~ 307 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPK------------------EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGH 307 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCH------------------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 000011112357777776521 12222 001112233555555444321000000000 0
Q ss_pred CCCCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCC-cC
Q 007873 225 PYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKP-VR 303 (586)
Q Consensus 225 ~~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~ 303 (586)
+-.|| |||+|+|.++.++..++... ++|+|+|.|.+.....- . ++....... +..... ..
T Consensus 308 ~~~pD-vIHaHyw~sG~aa~~L~~~l-------gVP~V~T~HSLgr~K~~---~--ll~~g~~~~------~~~~~~y~~ 368 (1050)
T TIGR02468 308 PVWPY-VIHGHYADAGDSAALLSGAL-------NVPMVLTGHSLGRDKLE---Q--LLKQGRMSK------EEINSTYKI 368 (1050)
T ss_pred CCCCC-EEEECcchHHHHHHHHHHhh-------CCCEEEECccchhhhhh---h--hcccccccc------cccccccch
Confidence 11399 99999999999999999874 99999999986421110 0 000000000 000000 01
Q ss_pred CcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcc--hhhhh-------------ccCeeEecCCcccCCcCCCCcc
Q 007873 304 GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVEL--DNIIR-------------KTGIKGIVNGMDVQEWNPLTDK 368 (586)
Q Consensus 304 ~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~--~~~~~-------------~~~i~vI~ngvd~~~~~p~~~~ 368 (586)
.+.+...+..+..||.||++|+..++++...+. +.++ +..++ ..++.|||||+|++.|.|....
T Consensus 369 ~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~-~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~ 447 (1050)
T TIGR02468 369 MRRIEAEELSLDASEIVITSTRQEIEEQWGLYD-GFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGD 447 (1050)
T ss_pred HHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhc-cCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCcc
Confidence 134456678899999999999999998765321 1111 00000 1289999999999999986421
Q ss_pred ccccccCcc-ccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc----CCeEEEEEeCCCh-
Q 007873 369 YIGVKYDAS-TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK----ENVQIIVLGTGKK- 442 (586)
Q Consensus 369 ~~~~~~~~~-~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~----~~v~lvIvG~g~~- 442 (586)
.-......+ ......+.....+++.+. + ++.++|+|+||+.++||++.||+|+..+.. +++. +|+|+|+.
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~l~r~~~-~--pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~ 523 (1050)
T TIGR02468 448 MDGETEGNEEHPAKPDPPIWSEIMRFFT-N--PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDI 523 (1050)
T ss_pred ccchhcccccccccccchhhHHHHhhcc-c--CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchh
Confidence 000000000 000000011123333332 2 356899999999999999999999999853 3565 46687642
Q ss_pred --------hhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhc----cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC
Q 007873 443 --------PMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA----DFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 443 --------~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~a----Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (586)
.+...+.++..+++ ++|.+.+..+.++++.+|+.| |+||+||++|+||++++||||||+|||+|+.
T Consensus 524 d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdv 603 (1050)
T TIGR02468 524 DEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKN 603 (1050)
T ss_pred hhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCC
Confidence 12345666666655 456666666778888999888 6999999999999999999999999999999
Q ss_pred cCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 509 GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 509 gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
||+.|++.++.+|+++ +|.|+++|+++|.+++++ ++.+++|++++. .++|||+.++++|++..
T Consensus 604 GG~~EII~~g~nGlLV----------dP~D~eaLA~AL~~LL~D--pelr~~m~~~gr~~v~~FSWe~ia~~yl~~i 668 (1050)
T TIGR02468 604 GGPVDIHRVLDNGLLV----------DPHDQQAIADALLKLVAD--KQLWAECRQNGLKNIHLFSWPEHCKTYLSRI 668 (1050)
T ss_pred CCcHHHhccCCcEEEE----------CCCCHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999999999998 999999999999999998 888999999984 46899999999999753
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=2e-39 Score=351.60 Aligned_cols=389 Identities=19% Similarity=0.178 Sum_probs=259.1
Q ss_pred ccchHHHHhhhhHHHHHhCCC--eEEEEEecCCCcc--ccCCcceEEEEEeCCeeeEEEEEEEEeCCceEEEEcCccccc
Q 007873 99 KTGGLGDVLGGLPPALAANGH--RVMTIAPRYDQYK--DAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLA 174 (586)
Q Consensus 99 ~~GG~~~~~~~L~~~L~~~Gh--~V~vvt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~ 174 (586)
..||++.++.+|+++|+++|| +|.|+|..++.-. ..+. .......+|++++.++....
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~----------------~~~~~~~~gv~v~r~~~~~~-- 85 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYA----------------QPIERIAPGARIVRLPFGPR-- 85 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccC----------------CCeeEeCCCcEEEEecCCCC--
Confidence 489999999999999999997 9999997643210 0000 00123346888877743110
Q ss_pred cccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHHHHhhccCCC
Q 007873 175 KVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKG 254 (586)
Q Consensus 175 ~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~l~~~~~~~~ 254 (586)
.|.. ..+-......+...+.+.++... .+|| |||+|.|..++++..++..
T Consensus 86 ---------~~~~-----~~~~~~~~~~~~~~l~~~~~~~~----------~~~D-vIH~h~~~~~~~~~~~~~~----- 135 (439)
T TIGR02472 86 ---------RYLR-----KELLWPYLDELADNLLQHLRQQG----------HLPD-LIHAHYADAGYVGARLSRL----- 135 (439)
T ss_pred ---------CCcC-----hhhhhhhHHHHHHHHHHHHHHcC----------CCCC-EEEEcchhHHHHHHHHHHH-----
Confidence 0100 00001111234444555554321 1499 9999998887777766655
Q ss_pred CCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCc-CCcchhhhhHHhhcCCEEEEeCHHHHHHHhc
Q 007873 255 MYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPV-RGRKINWMKAGILESDMVLTVSPHYAQELVS 333 (586)
Q Consensus 255 ~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~ 333 (586)
.++|+|+|.|+...... ..+...++.... +.+.+ ....+.+.+..++.+|.|+++|+....+...
T Consensus 136 --~~~p~V~t~H~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 201 (439)
T TIGR02472 136 --LGVPLIFTGHSLGREKR---RRLLAAGLKPQQ---------IEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQYA 201 (439)
T ss_pred --hCCCEEEecccccchhh---hhcccCCCChhh---------hhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHHHHH
Confidence 47899999997532100 000000000000 00000 0112234577889999999999865544332
Q ss_pred CccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCcc
Q 007873 334 GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE 413 (586)
Q Consensus 334 ~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~ 413 (586)
. ..+++.+ ++.+||||+|++.|.|.... ......+..+ ++++.+. +.++|+|+||+.+
T Consensus 202 ~-~~~~~~~------ki~vIpnGvd~~~f~~~~~~------------~~~~~~~~~~-~~~~~~~--~~~~i~~vGrl~~ 259 (439)
T TIGR02472 202 L-YDSYQPE------RMQVIPPGVDLSRFYPPQSS------------EETSEIDNLL-APFLKDP--EKPPILAISRPDR 259 (439)
T ss_pred h-ccCCCcc------ceEEECCCcChhhcCCCCcc------------ccchhHHHHH-Hhhcccc--CCcEEEEEcCCcc
Confidence 1 1244433 89999999999999875421 0111112222 2334332 4579999999999
Q ss_pred ccCHHHHHHHHhhccc--CCeEEE-EEeCCCh--hh-------HHHHHHHHHHC--CCceEEEeccChHHHHHHHHhc--
Q 007873 414 QKGSDILAAAIPHFIK--ENVQII-VLGTGKK--PM-------EKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGA-- 477 (586)
Q Consensus 414 ~KG~d~Ll~A~~~l~~--~~v~lv-IvG~g~~--~~-------~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~a-- 477 (586)
.||++.|++|+..+.. ++.+++ |+|+|+. .+ .+.+.++..++ .+++.+.+..+.++++.+|+.|
T Consensus 260 ~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~ 339 (439)
T TIGR02472 260 RKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAAR 339 (439)
T ss_pred cCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 9999999999986532 234443 5687652 11 12233444443 3467666666778888899877
Q ss_pred --cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCH
Q 007873 478 --DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 555 (586)
Q Consensus 478 --Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~ 555 (586)
|++++||.+|+||++++|||+||+|||+|+.||+.|++.++.+|+++ +++|+++|+++|.+++++ +
T Consensus 340 ~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv----------~~~d~~~la~~i~~ll~~--~ 407 (439)
T TIGR02472 340 SRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLV----------DVLDLEAIASALEDALSD--S 407 (439)
T ss_pred cCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEe----------CCCCHHHHHHHHHHHHhC--H
Confidence 99999999999999999999999999999999999999999999998 999999999999999998 7
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 556 QALAEMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 556 ~~~~~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
+.+++|++++. .++|||+.++++|++..
T Consensus 408 ~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 408 SQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 88888999884 58999999999998753
No 11
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=3.2e-39 Score=355.90 Aligned_cols=473 Identities=18% Similarity=0.229 Sum_probs=363.6
Q ss_pred EEEEecccc-----CccccchHHHHhhhhHHHHHhCCCeEEEEEecCCC-cc--------------ccCC-------c--
Q 007873 87 ILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ-YK--------------DAWD-------T-- 137 (586)
Q Consensus 87 Il~v~~~~~-----P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~-~~--------------~~~~-------~-- 137 (586)
|++++.||. | ...||+|+..+...++++..|.....++-.|.. |- +.|+ .
T Consensus 1 ~ayf~~E~g~~~~~p-~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLP-IYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 345555532 4 258999999999999999999999999887642 11 1121 0
Q ss_pred -----ceEEEEEeCCeeeEEEEEEEEeCCceEEEEcCccccccccCCCCC-cccCCCCCCCCcchhHHHHHHHHHHHHHh
Q 007873 138 -----DVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQS-KIYGPRTGEDYQDNQLRFSLLCQAALEAP 211 (586)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (586)
...+.+.+.+....++......+++++++++++..-+..|.+... .+|++ |..+++.++.+|+.++++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~----D~~~R~~Qe~fl~~a~l~~l 155 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG----DKEMRIAQEIVLGIGGVRAL 155 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 124566676677778888888889999999988622222333332 47863 35566677799999999999
Q ss_pred HhhcccCCCCCCCCCCCCEEEEecCCccchHHHHHHhhccCCCC-------CCCceEEEEEcCCccccc--cCccccc--
Q 007873 212 RILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFG-- 280 (586)
Q Consensus 212 ~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~l~~~~~~~~~-------~~~~pvv~~iH~~~~~~~--~~~~~~~-- 280 (586)
+.+.+ +|| |||+||||+++++.++....-..+. ..+.+++||+|++.+||. |+...+.
T Consensus 156 ~~l~~----------~pd-viH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~ 224 (601)
T TIGR02094 156 RALGI----------DPD-VYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKY 224 (601)
T ss_pred HHcCC----------Cce-EEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHH
Confidence 88764 599 9999999999999886432111110 014789999999999997 8877663
Q ss_pred ------ccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhh--ccCeeE
Q 007873 281 ------LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKG 352 (586)
Q Consensus 281 ------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~--~~~i~v 352 (586)
.++++..+........ +-....+++++.++..||.|.+||+.+.+.... . .+ .+.+.++ ..++..
T Consensus 225 ~~~~~~~~gl~~~~~~~~~~~~----~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~-l-~~-~l~~~~~~~~~~i~g 297 (601)
T TIGR02094 225 FGDYAANLGLPREQLLALGREN----PDDPEPFNMTVLALRLSRIANGVSKLHGEVSRK-M-WQ-FLYPGYEEEEVPIGY 297 (601)
T ss_pred hhhhhhHhCCCHHHHHhhhhhc----cCccCceeHHHHHHHhCCeeeeecHHHHHHHHH-H-HH-hhhhhcccccCCccc
Confidence 3566665543221111 000134799999999999999999988873321 0 11 0111111 236899
Q ss_pred ecCCcccCCcCCCCccccccccCcccc---------------------ccccHHHHHHHHH-------------------
Q 007873 353 IVNGMDVQEWNPLTDKYIGVKYDASTV---------------------MDAKPLLKEALQA------------------- 392 (586)
Q Consensus 353 I~ngvd~~~~~p~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~------------------- 392 (586)
|.||||...|.|.+++.+..+|+.+++ .+.|..+|.+|++
T Consensus 298 ItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~ 377 (601)
T TIGR02094 298 VTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAI 377 (601)
T ss_pred eeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchh
Confidence 999999999999999999999998883 3688889999988
Q ss_pred --HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCChh------hHHHHHHHHHH--CC
Q 007873 393 --EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGKKP------MEKQLEQLEIL--YP 456 (586)
Q Consensus 393 --~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~~~------~~~~l~~l~~~--~~ 456 (586)
++|++.+++.+++++++|+.++||++++++++.++.+ .++||||+|++.+. +++.+.+++.+ ++
T Consensus 378 ~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~ 457 (601)
T TIGR02094 378 LMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFR 457 (601)
T ss_pred hhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCC
Confidence 5788888899999999999999999999999888853 48999999998854 89999999988 88
Q ss_pred CceEEEeccChHHHHHHHHhccEEEE-cCC-CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEcc--cccccc
Q 007873 457 EKARGVAKFNIPLAHMIIAGADFILI-PSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS--FSVDCE 532 (586)
Q Consensus 457 ~~v~~~~~~~~~~~~~~l~~aDi~l~-PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~--~~~~~~ 532 (586)
+++.+...|+.++++.++++||++++ ||+ +|+||++.+-||..|.+-+++..|...|.. ++.|||.||. ...|-+
T Consensus 458 ~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~ 536 (601)
T TIGR02094 458 GRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEE 536 (601)
T ss_pred CCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccc
Confidence 89999999999999999999999999 999 999999999999999999999999999987 6789999962 222333
Q ss_pred CCCCCCHHHHHHHHHHHH-Hhc-C------HHHHHHHHHHHHHh---cCCHHHHHHHHHHHh
Q 007873 533 AVDPVDVAAVSTTVRRAL-ATY-G------TQALAEMMKNGMAQ---DLSWKVSIGTVQEED 583 (586)
Q Consensus 533 ~v~~~d~~~la~~I~~ll-~~~-~------~~~~~~~~~~~~~~---~fsw~~~a~~~~~~~ 583 (586)
..+..|+++|.++|++.+ ..+ . +..+.+|.+++|+. +|||++++++|.+.+
T Consensus 537 ~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 537 EQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 445789999999998877 332 1 34689999999987 899999999999864
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.2e-39 Score=348.50 Aligned_cols=390 Identities=17% Similarity=0.197 Sum_probs=274.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||++++..|+|. .||++.++.+|+++|.++||+|+|+|+. +.+.. |... .............+|+.+
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~-~~~~~-~~~~--------~~~~~~~~~~~~~~~i~v 68 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAP-PYYPQ-WRVG--------EGYSAWRYRRESEGGVTV 68 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecC-CCCCC-CCCC--------cccccccceeeecCCeEE
Confidence 8999999998886 8999999999999999999999999976 21211 1000 000001112233467777
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHH-hHhhcccCCCCCCCCCCCCEEEEecCCcc--ch
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHT--SL 241 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~pDvii~~h~~~~--~~ 241 (586)
+.++....... . ..........|....+.. .+... .+|| |||+|.... +.
T Consensus 69 ~r~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~D-iv~~~~p~~~~~~ 121 (412)
T PRK10307 69 WRCPLYVPKQP---------S-------GLKRLLHLGSFALSSFFPLLAQRR----------WRPD-RVIGVVPTLFCAP 121 (412)
T ss_pred EEccccCCCCc---------c-------HHHHHHHHHHHHHHHHHHHhhccC----------CCCC-EEEEeCCcHHHHH
Confidence 77643211000 0 000111111121222221 22211 2699 899987442 23
Q ss_pred HHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCc-chhhhhHHhhcCCEE
Q 007873 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR-KINWMKAGILESDMV 320 (586)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ad~v 320 (586)
....+++. .++|+++++|+..+...+. .+.. ..+...+ ...+++..++.+|.|
T Consensus 122 ~~~~~~~~-------~~~~~v~~~~d~~~~~~~~------~~~~-------------~~~~~~~~~~~~~~~~~~~ad~i 175 (412)
T PRK10307 122 GARLLARL-------SGARTWLHIQDYEVDAAFG------LGLL-------------KGGKVARLATAFERSLLRRFDNV 175 (412)
T ss_pred HHHHHHHh-------hCCCEEEEeccCCHHHHHH------hCCc-------------cCcHHHHHHHHHHHHHHhhCCEE
Confidence 33444444 4789999999765421110 0000 0000001 123456778899999
Q ss_pred EEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCC
Q 007873 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (586)
Q Consensus 321 itvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~ 400 (586)
+++|+..++.+.+ +|++.+ ++.+||||+|.+.|.|.... ....++++++++.
T Consensus 176 i~~S~~~~~~~~~---~~~~~~------~i~vi~ngvd~~~~~~~~~~-----------------~~~~~~~~~~~~~-- 227 (412)
T PRK10307 176 STISRSMMNKARE---KGVAAE------KVIFFPNWSEVARFQPVADA-----------------DVDALRAQLGLPD-- 227 (412)
T ss_pred EecCHHHHHHHHH---cCCCcc------cEEEECCCcCHhhcCCCCcc-----------------chHHHHHHcCCCC--
Confidence 9999999999875 455433 89999999999888765321 1235677888864
Q ss_pred CCcEEEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCC-CceEEEeccChHHHHHHHHhcc
Q 007873 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~-~~v~~~~~~~~~~~~~~l~~aD 478 (586)
+.++|+|+|++.+.||++.|++|++.+.+ ++++|+|+|+|+ ..+.++++..+++ .++.+.+..+.+++..+++.||
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aD 305 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGG--GKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMAD 305 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCCh--hHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcC
Confidence 45899999999999999999999998865 689999999998 5667777766554 3688887778889999999999
Q ss_pred EEEEcCCCCC----CcHHHHHHHHcCCcEEEcCCcC--cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 479 FILIPSRFEP----CGLIQLHAMRYGTVPIVASTGG--LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 479 i~l~PS~~E~----~gl~~lEAma~G~PvI~s~~gg--~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
++++||..|+ +|.+++|||+||+|||+|+.|| +.|++. .+|+++ +++|+++++++|.+++++
T Consensus 306 i~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~----------~~~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 306 CHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCV----------EPESVEALVAAIAALARQ 373 (412)
T ss_pred EeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEe----------CCCCHHHHHHHHHHHHhC
Confidence 9999999988 6788999999999999999877 458887 599998 999999999999999998
Q ss_pred cCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 553 YGTQALAEMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 553 ~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
++.+++|++++. +++|||+.++++|++.+
T Consensus 374 --~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 405 (412)
T PRK10307 374 --ALLRPKLGTVAREYAERTLDKENVLRQFIADI 405 (412)
T ss_pred --HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 888899999985 47899999999998864
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.8e-39 Score=346.57 Aligned_cols=382 Identities=19% Similarity=0.268 Sum_probs=273.3
Q ss_pred EEEEeccccCcc-----ccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCC
Q 007873 87 ILFVGTEVAPWS-----KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (586)
Q Consensus 87 Il~v~~~~~P~~-----~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (586)
|++++....|+. ..||.+.++.+|+++|+++||+|+|+|+........ .....+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------~~~~~~~ 60 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP--------------------VVEVAPG 60 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC--------------------ccccCCC
Confidence 466777666652 159999999999999999999999999763211100 0112346
Q ss_pred ceEEEEcCccccccccCCCCCcccCCCCCCCCcchhH-HHHHHHHHHH-HHhHhhcccCCCCCCCCCCCCEEEEecCCcc
Q 007873 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQL-RFSLLCQAAL-EAPRILNLNSNKYFSGPYGEDVVFVANDWHT 239 (586)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~ 239 (586)
+.++.+....+... ...... .+..|....+ ..++.. ..+|| |||+|.|.+
T Consensus 61 ~~v~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~D-iih~h~~~~ 112 (405)
T TIGR03449 61 VRVRNVVAGPYEGL-----------------DKEDLPTQLCAFTGGVLRAEARHE----------PGYYD-LIHSHYWLS 112 (405)
T ss_pred cEEEEecCCCcccC-----------------CHHHHHHHHHHHHHHHHHHHhhcc----------CCCCC-eEEechHHH
Confidence 66665532211110 000111 1111222222 222221 12599 899999887
Q ss_pred chHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCE
Q 007873 240 SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDM 319 (586)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 319 (586)
+.++.++++. .++|+|+++|+...... ..+.....+. ......+.+..++.+|.
T Consensus 113 ~~~~~~~~~~-------~~~p~v~t~h~~~~~~~---~~~~~~~~~~----------------~~~~~~~e~~~~~~~d~ 166 (405)
T TIGR03449 113 GQVGWLLRDR-------WGVPLVHTAHTLAAVKN---AALADGDTPE----------------PEARRIGEQQLVDNADR 166 (405)
T ss_pred HHHHHHHHHh-------cCCCEEEeccchHHHHH---HhccCCCCCc----------------hHHHHHHHHHHHHhcCe
Confidence 7777666654 47899999997532100 0000000000 00111223557889999
Q ss_pred EEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCC
Q 007873 320 VLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (586)
Q Consensus 320 vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (586)
++++|+...+.+.. .+|.+.+ ++.+||||+|.+.|.|.. +...+++++++.
T Consensus 167 vi~~s~~~~~~~~~--~~~~~~~------ki~vi~ngvd~~~~~~~~--------------------~~~~~~~~~~~~- 217 (405)
T TIGR03449 167 LIANTDEEARDLVR--HYDADPD------RIDVVAPGADLERFRPGD--------------------RATERARLGLPL- 217 (405)
T ss_pred EEECCHHHHHHHHH--HcCCChh------hEEEECCCcCHHHcCCCc--------------------HHHHHHhcCCCC-
Confidence 99999998888774 2455433 899999999998887653 344677788764
Q ss_pred CCCcEEEEEecCccccCHHHHHHHHhhccc--CC--eEEEEEeCCCh---hhHHHHHHHHHHCC--CceEEEeccChHHH
Q 007873 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN--VQIIVLGTGKK---PMEKQLEQLEILYP--EKARGVAKFNIPLA 470 (586)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~--v~lvIvG~g~~---~~~~~l~~l~~~~~--~~v~~~~~~~~~~~ 470 (586)
+.++|+|+||+.+.||++.+++|++++.+ ++ ++|+|+|++.. ...+.++++..+++ .++.+.+..+.+++
T Consensus 218 -~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 296 (405)
T TIGR03449 218 -DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEEL 296 (405)
T ss_pred -CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHH
Confidence 45899999999999999999999998855 44 99999996321 24566777776655 46877777778888
Q ss_pred HHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
..+|+.||++++||..|+||++++|||++|+|||+++.||..|++.++.+|+++ +++|+++++++|.+++
T Consensus 297 ~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~----------~~~d~~~la~~i~~~l 366 (405)
T TIGR03449 297 VHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLV----------DGHDPADWADALARLL 366 (405)
T ss_pred HHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEEC----------CCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 8999999999999999
Q ss_pred HhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHhc
Q 007873 551 ATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~ 584 (586)
++ ++.+++|++++. .++|||+.++++|++.+.
T Consensus 367 ~~--~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 367 DD--PRTRIRMGAAAVEHAAGFSWAATADGLLSSYR 400 (405)
T ss_pred hC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 98 788888888874 478999999999998653
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=5.3e-39 Score=341.89 Aligned_cols=370 Identities=21% Similarity=0.268 Sum_probs=267.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||++|+..|+|. ..||.+.++.+|+++|+++ |+|.|++...... ..+|+++
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--------------------------~~~~~~~ 52 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--------------------------DSEGLTV 52 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh--------------------------cCCCeEE
Confidence 8999999998885 4599999999999999987 8888887642110 0123444
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
+.+..+..... +...... +.. .+..... ..++| |||+|.|..++.+.
T Consensus 53 ~~~~~~~~~~~-----------------~~~~~~~---~~~---~~~~~~~---------~~~~d-ivh~~~~~~~~~~~ 99 (388)
T TIGR02149 53 KGYRPWSELKE-----------------ANKALGT---FSV---DLAMAND---------PVDAD-VVHSHTWYTFLAGH 99 (388)
T ss_pred EEecChhhccc-----------------hhhhhhh---hhH---HHHHhhC---------CCCCC-eEeecchhhhhHHH
Confidence 33321110000 0000000 100 1111111 12599 99999988776665
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
...+. .++|+++++|+..+...+.... .+. + +.....+.+..++.+|.++++|
T Consensus 100 ~~~~~-------~~~p~v~~~h~~~~~~~~~~~~---~~~------------~-----~~~~~~~~~~~~~~ad~vi~~S 152 (388)
T TIGR02149 100 LAKKL-------YDKPLVVTAHSLEPLRPWKEEQ---LGG------------G-----YKLSSWAEKTAIEAADRVIAVS 152 (388)
T ss_pred HHHHh-------cCCCEEEEeecccccccccccc---ccc------------c-----hhHHHHHHHHHHhhCCEEEEcc
Confidence 54443 4899999999864321111000 000 0 0011123466788999999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+.+++.+.+.. .+++. .++.+||||+|...|.|.. +..++++++++. +.++
T Consensus 153 ~~~~~~~~~~~-~~~~~------~~i~vi~ng~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~ 203 (388)
T TIGR02149 153 GGMREDILKYY-PDLDP------EKVHVIYNGIDTKEYKPDD--------------------GNVVLDRYGIDR--SRPY 203 (388)
T ss_pred HHHHHHHHHHc-CCCCc------ceEEEecCCCChhhcCCCc--------------------hHHHHHHhCCCC--CceE
Confidence 99999887521 13332 3899999999998887653 446778888864 4589
Q ss_pred EEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC--hhhHHHHHHHHHHCCC---ceEEEe-ccChHHHHHHHHhcc
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK--KPMEKQLEQLEILYPE---KARGVA-KFNIPLAHMIIAGAD 478 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~--~~~~~~l~~l~~~~~~---~v~~~~-~~~~~~~~~~l~~aD 478 (586)
|+|+||+.+.||++.|++|++++. ++++++++|+|. ..+.+.+++....++. ++.+.. ..+.+++..+++.||
T Consensus 204 i~~~Grl~~~Kg~~~li~a~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aD 282 (388)
T TIGR02149 204 ILFVGRITRQKGVPHLLDAVHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAE 282 (388)
T ss_pred EEEEcccccccCHHHHHHHHHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCC
Confidence 999999999999999999999984 578999988765 2345566666555432 355544 357788899999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCH------HHHHHHHHHHHHh
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDV------AAVSTTVRRALAT 552 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~------~~la~~I~~ll~~ 552 (586)
++++||.+|++|++++|||+||+|||+++.||..|++.++.+|+++ +++|+ ++++++|.+++++
T Consensus 283 v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~----------~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 283 VFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLV----------PPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred EEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEc----------CCCCCcccchHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998 88888 9999999999998
Q ss_pred cCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 553 YGTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 553 ~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
++.+++|+++++ .++|||+.++++|.+.++
T Consensus 353 --~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 353 --PELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred --HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888899999885 478999999999998764
No 15
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.2e-38 Score=341.33 Aligned_cols=357 Identities=18% Similarity=0.215 Sum_probs=254.1
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++|+..|+|. .||.++++.+|+++|+++||+|.|+++.++..... ....+|++++
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---------------------~~~~~~i~v~ 57 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI---------------------RYLTNGLKVY 57 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc---------------------ccccCceeEE
Confidence 799999999996 89999999999999999999999999864321110 0012355555
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH--
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP-- 243 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~-- 243 (586)
.++...+... .. .. .+..+...+...++. .+|| |||+|++......
T Consensus 58 ~~p~~~~~~~-------~~--------~~----~~~~~~~~l~~~~~~------------~~~D-iIh~~~~~~~~~~~~ 105 (398)
T cd03796 58 YLPFVVFYNQ-------ST--------LP----TFFGTFPLLRNILIR------------ERIT-IVHGHQAFSALAHEA 105 (398)
T ss_pred EecceeccCC-------cc--------cc----chhhhHHHHHHHHHh------------cCCC-EEEECCCCchHHHHH
Confidence 5532211110 00 00 000111122222222 2699 9999987655432
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
..+.+. .++|+|++.|+... ..+.. .. ....+++..++++|.++++
T Consensus 106 ~~~~~~-------~~~~~v~t~h~~~~-----~~~~~-----~~-----------------~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 106 LLHART-------MGLKTVFTDHSLFG-----FADAS-----SI-----------------HTNKLLRFSLADVDHVICV 151 (398)
T ss_pred HHHhhh-------cCCcEEEEeccccc-----ccchh-----hH-----------------HhhHHHHHhhccCCEEEEe
Confidence 222222 47899999997431 00000 00 0112345567899999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
|+...+.+.. ..+++. +++.+||||+|.+.|.|..++ .+++.+
T Consensus 152 s~~~~~~~~~--~~~~~~------~k~~vi~ngvd~~~f~~~~~~-----------------------------~~~~~~ 194 (398)
T cd03796 152 SHTSKENTVL--RASLDP------ERVSVIPNAVDSSDFTPDPSK-----------------------------RDNDKI 194 (398)
T ss_pred cHhHhhHHHH--HhCCCh------hhEEEEcCccCHHHcCCCccc-----------------------------CCCCce
Confidence 9998876542 134433 389999999999888775421 123568
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccE
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
+|+|+||+.++||++.|++|++.+.+ ++++|+|+|+|+ ..+.++++..+++ +++.+.+..+.+++..+++.||+
T Consensus 195 ~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~ 272 (398)
T cd03796 195 TIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP--KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHI 272 (398)
T ss_pred EEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCE
Confidence 99999999999999999999998865 789999999997 4556777766654 46888877788899999999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
+++||..|+||++++|||+||+|||+++.||..|++.++. +++ .+.|+++++++|.+++++ .....
T Consensus 273 ~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~-----------~~~~~~~l~~~l~~~l~~--~~~~~ 338 (398)
T cd03796 273 FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDM-ILL-----------AEPDVESIVRKLEEAISI--LRTGK 338 (398)
T ss_pred EEeCChhhccCHHHHHHHHcCCCEEECCCCCchhheeCCc-eee-----------cCCCHHHHHHHHHHHHhC--hhhhh
Confidence 9999999999999999999999999999999999998864 333 455899999999999987 33332
Q ss_pred HHHHHH---HHhcCCHHHHHHHHHHHhc
Q 007873 560 EMMKNG---MAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 560 ~~~~~~---~~~~fsw~~~a~~~~~~~~ 584 (586)
.+.+++ .+++|||+.++++|++.+.
T Consensus 339 ~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 366 (398)
T cd03796 339 HDPWSFHNRVKKMYSWEDVAKRTEKVYD 366 (398)
T ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 333433 5789999999999998653
No 16
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=2.3e-38 Score=353.27 Aligned_cols=422 Identities=15% Similarity=0.164 Sum_probs=273.1
Q ss_pred CceEEEEeccc----cCc---cccchHHHHhhhhHHHH--------HhCCC----eEEEEEecCCCccccCCcceEEEEE
Q 007873 84 GLNILFVGTEV----APW---SKTGGLGDVLGGLPPAL--------AANGH----RVMTIAPRYDQYKDAWDTDVVIELK 144 (586)
Q Consensus 84 ~MkIl~v~~~~----~P~---~~~GG~~~~~~~L~~~L--------~~~Gh----~V~vvt~~~~~~~~~~~~~~~~~~~ 144 (586)
.|||++|+... .|. ..+||...|+.+|+++| +++|| +|.|+|...+.... .+.....+..
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-~~~~~~~e~~ 333 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-TTCNQRLEKV 333 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-cccccccccc
Confidence 59999999876 221 12799999999999985 68999 77799977432110 0001111110
Q ss_pred eCCeeeEEEEEEEEeCCceEEEEcC--------ccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhH-hhc
Q 007873 145 VGDKIEKVRFFHCHKRGVDRVFVDH--------PWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPR-ILN 215 (586)
Q Consensus 145 ~~~~~~~~~~~~~~~~gv~~~~v~~--------~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 215 (586)
. ..+|+.++.++- +.|..| .. -+-....|...+.+.++ ..+
T Consensus 334 ~------------~~~~~~I~rvp~g~~~~~~~~~~i~k------~~------------l~p~l~~f~~~~~~~~~~~~~ 383 (784)
T TIGR02470 334 Y------------GTEHAWILRVPFRTENGIILRNWISR------FE------------IWPYLETFAEDAEKEILAELQ 383 (784)
T ss_pred c------------CCCceEEEEecCCCCcccccccccCH------HH------------HHHHHHHHHHHHHHHHHHhcC
Confidence 0 013444444431 111221 00 01111234444444332 222
Q ss_pred ccCCCCCCCCCCCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccc
Q 007873 216 LNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI 295 (586)
Q Consensus 216 ~~~~~~~~~~~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 295 (586)
-+|| +||+|.|.+++++..++... ++|.++|.|.+....... .....-....++..
T Consensus 384 ----------~~pD-lIHahy~d~glva~lla~~l-------gVP~v~t~HsL~~~K~~~-~g~~~~~~e~~~~~----- 439 (784)
T TIGR02470 384 ----------GKPD-LIIGNYSDGNLVASLLARKL-------GVTQCTIAHALEKTKYPD-SDIYWQEFEDKYHF----- 439 (784)
T ss_pred ----------CCCC-EEEECCCchHHHHHHHHHhc-------CCCEEEECCcchhhcccc-cccccccchhHHHh-----
Confidence 1599 99999999999998888774 999999999875422110 00000000000000
Q ss_pred cCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHH----Hhc---Cc------cC----CCcchhhhhccCeeEecCCcc
Q 007873 296 DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE----LVS---GE------DK----GVELDNIIRKTGIKGIVNGMD 358 (586)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~----l~~---~~------~~----g~~~~~~~~~~~i~vI~ngvd 358 (586)
...+.-...++..||.|+|.|...... +.. .. .+ |++. ...++.+||+|+|
T Consensus 440 --------~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~----~~~Ki~VVpPGVD 507 (784)
T TIGR02470 440 --------SCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDV----FDPKFNIVSPGAD 507 (784)
T ss_pred --------hhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccC----CcCCeEEECCCcC
Confidence 001122346788899999999765332 110 00 01 2211 1348899999999
Q ss_pred cCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEE
Q 007873 359 VQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIV 436 (586)
Q Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvI 436 (586)
...|.|.+.+.-... ......+....++.+.++.+|+..++++|+|+++||+.++||++.|++|+.++.. ++++|+|
T Consensus 508 ~~iF~P~~~~~~r~~-~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVI 586 (784)
T TIGR02470 508 ESIYFPYSDKEKRLT-NLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVV 586 (784)
T ss_pred hhhcCCCCchhhhhh-hhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEE
Confidence 998887543100000 0000000111234556788898667788999999999999999999999987643 5799999
Q ss_pred EeCCCh----------hhHHHHHHHHHHCC--CceEEEecc-ChHHHHHHH---H-hccEEEEcCCCCCCcHHHHHHHHc
Q 007873 437 LGTGKK----------PMEKQLEQLEILYP--EKARGVAKF-NIPLAHMII---A-GADFILIPSRFEPCGLIQLHAMRY 499 (586)
Q Consensus 437 vG~g~~----------~~~~~l~~l~~~~~--~~v~~~~~~-~~~~~~~~l---~-~aDi~l~PS~~E~~gl~~lEAma~ 499 (586)
+|++.. ...+.+.+++.+++ +++.+.+.. +.....+++ + .+|++++||++|+||++++|||+|
T Consensus 587 VGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAc 666 (784)
T TIGR02470 587 VAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTC 666 (784)
T ss_pred EeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHc
Confidence 998642 13356667777765 567766643 333333333 3 468999999999999999999999
Q ss_pred CCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHH---HhcCCHHH
Q 007873 500 GTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNGM---AQDLSWKV 574 (586)
Q Consensus 500 G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~--~~~~~~~~~~~~~~---~~~fsw~~ 574 (586)
|+|||+|+.||+.|+|.++.+|+++ +|.|+++++++|.++++. ..++.+++|+++++ .++|||+.
T Consensus 667 GlPVVAT~~GG~~EiV~dg~tGfLV----------dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~ 736 (784)
T TIGR02470 667 GLPTFATRFGGPLEIIQDGVSGFHI----------DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKI 736 (784)
T ss_pred CCCEEEcCCCCHHHHhcCCCcEEEe----------CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999998 999999999999998741 12788999999986 47999999
Q ss_pred HHHHHHHHh
Q 007873 575 SIGTVQEED 583 (586)
Q Consensus 575 ~a~~~~~~~ 583 (586)
.++++++..
T Consensus 737 ~A~~ll~l~ 745 (784)
T TIGR02470 737 YSERLLTLA 745 (784)
T ss_pred HHHHHHHHH
Confidence 999998754
No 17
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2e-38 Score=346.24 Aligned_cols=368 Identities=18% Similarity=0.250 Sum_probs=262.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCC
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (586)
+++|||+++.... |+...||.+.++.+|+++|.++||+|+++++... .... ..|
T Consensus 56 ~~~mrI~~~~~~~-~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~-~~~~------------------------~~g 109 (465)
T PLN02871 56 SRPRRIALFVEPS-PFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG-VPQE------------------------FHG 109 (465)
T ss_pred CCCceEEEEECCc-CCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC-CCcc------------------------ccC
Confidence 6789999998543 3345899999999999999999999999998632 1110 012
Q ss_pred ceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccch
Q 007873 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (586)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~ 241 (586)
+.++.+.. +.. ..|.. + ...+ .+...+.+.++.. +|| |||+|......
T Consensus 110 ~~v~~~~~--~~~--------~~~~~-----~---~~~~-~~~~~l~~~i~~~------------kpD-iIh~~~~~~~~ 157 (465)
T PLN02871 110 AKVIGSWS--FPC--------PFYQK-----V---PLSL-ALSPRIISEVARF------------KPD-LIHASSPGIMV 157 (465)
T ss_pred ceeeccCC--cCC--------ccCCC-----c---eeec-cCCHHHHHHHHhC------------CCC-EEEECCCchhH
Confidence 22221110 000 00000 0 0000 0001222333332 599 99999754332
Q ss_pred -HHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEE
Q 007873 242 -IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (586)
Q Consensus 242 -~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 320 (586)
....+.+. .++|+|++.|+..... .. ..... ........+++..++.+|.+
T Consensus 158 ~~~~~~ak~-------~~ip~V~~~h~~~~~~-~~-----~~~~~---------------~~~~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 158 FGALFYAKL-------LCVPLVMSYHTHVPVY-IP-----RYTFS---------------WLVKPMWDIIRFLHRAADLT 209 (465)
T ss_pred HHHHHHHHH-------hCCCEEEEEecCchhh-hh-----cccch---------------hhHHHHHHHHHHHHhhCCEE
Confidence 23333333 4899999999643210 00 00000 00001123346667899999
Q ss_pred EEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCC
Q 007873 321 LTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 400 (586)
Q Consensus 321 itvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~ 400 (586)
+++|+..++.+.+ .+.. ...++.+||||+|.+.|.|..+ ...++.++... .+
T Consensus 210 i~~S~~~~~~l~~---~~~~-----~~~kv~vi~nGvd~~~f~p~~~-------------------~~~~~~~~~~~-~~ 261 (465)
T PLN02871 210 LVTSPALGKELEA---AGVT-----AANRIRVWNKGVDSESFHPRFR-------------------SEEMRARLSGG-EP 261 (465)
T ss_pred EECCHHHHHHHHH---cCCC-----CcCeEEEeCCccCccccCCccc-------------------cHHHHHHhcCC-CC
Confidence 9999999999885 3321 1238999999999999987542 12234444321 12
Q ss_pred CCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
+.++|+|+||+.++||++.++++++++ ++++|+|+|+|+ +.+.++++.... ++.+.+..+.+++..+|+.||++
T Consensus 262 ~~~~i~~vGrl~~~K~~~~li~a~~~~--~~~~l~ivG~G~--~~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~aDv~ 335 (465)
T PLN02871 262 EKPLIVYVGRLGAEKNLDFLKRVMERL--PGARLAFVGDGP--YREELEKMFAGT--PTVFTGMLQGDELSQAYASGDVF 335 (465)
T ss_pred CCeEEEEeCCCchhhhHHHHHHHHHhC--CCcEEEEEeCCh--HHHHHHHHhccC--CeEEeccCCHHHHHHHHHHCCEE
Confidence 458999999999999999999999987 589999999998 567777776543 48888877888899999999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc---CcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA 557 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~---g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~ 557 (586)
|+||..|+||++++|||+||+|||+++.||+.|++.+ +.+|+++ +++|+++++++|.+++++ ++.
T Consensus 336 V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv----------~~~d~~~la~~i~~ll~~--~~~ 403 (465)
T PLN02871 336 VMPSESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLY----------TPGDVDDCVEKLETLLAD--PEL 403 (465)
T ss_pred EECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEe----------CCCCHHHHHHHHHHHHhC--HHH
Confidence 9999999999999999999999999999999999999 9999998 999999999999999998 888
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHH
Q 007873 558 LAEMMKNGM--AQDLSWKVSIGTVQE 581 (586)
Q Consensus 558 ~~~~~~~~~--~~~fsw~~~a~~~~~ 581 (586)
+++|++++. .++|||+.+++++++
T Consensus 404 ~~~~~~~a~~~~~~fsw~~~a~~l~~ 429 (465)
T PLN02871 404 RERMGAAAREEVEKWDWRAATRKLRN 429 (465)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999884 478999999999987
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=3.2e-37 Score=328.16 Aligned_cols=358 Identities=16% Similarity=0.236 Sum_probs=260.7
Q ss_pred eEEEEecccc--CccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 86 NILFVGTEVA--PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 86 kIl~v~~~~~--P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
||+|+.++-. |....||++.++.++++.|+ |+|+++|...+.+++.. ...+|+.
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 59 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYT---------------------KVNDNCD 59 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchh---------------------hccCCCc
Confidence 7888766523 22368999999999999995 49999998866555420 1123556
Q ss_pred EEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH
Q 007873 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (586)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~ 243 (586)
++++.-+....+. ..+.+.. ....+.+.++..+...+. .++| |||.|+... +.
T Consensus 60 ~~~~~~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~---------~~~~-vi~v~~~~~-~~- 112 (380)
T PRK15484 60 IHYIGFSRIYKRL----FQKWTRL-----------DPLPYSQRILNIAHKFTI---------TKDS-VIVIHNSMK-LY- 112 (380)
T ss_pred eEEEEeccccchh----hhhhhcc-----------CchhHHHHHHHHHHhcCC---------CCCc-EEEEeCcHH-hH-
Confidence 6655322211100 0000000 111233334443333221 1478 999997432 22
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
..++.. +.++|+++++|+... ...+..++.++++
T Consensus 113 ~~~~~~------~~~~~~v~~~h~~~~----------------------------------------~~~~~~~~~ii~~ 146 (380)
T PRK15484 113 RQIRER------APQAKLVMHMHNAFE----------------------------------------PELLDKNAKIIVP 146 (380)
T ss_pred HHHHhh------CCCCCEEEEEecccC----------------------------------------hhHhccCCEEEEc
Confidence 222322 268899999996321 1123467999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
|++.++.+.+. .+ ..++.+||||+|...|.+.. +..++++++++. +.+
T Consensus 147 S~~~~~~~~~~----~~------~~~i~vIpngvd~~~~~~~~--------------------~~~~~~~~~~~~--~~~ 194 (380)
T PRK15484 147 SQFLKKFYEER----LP------NADISIVPNGFCLETYQSNP--------------------QPNLRQQLNISP--DET 194 (380)
T ss_pred CHHHHHHHHhh----CC------CCCEEEecCCCCHHHcCCcc--------------------hHHHHHHhCCCC--CCe
Confidence 99999888752 12 23789999999988887643 345667788764 348
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCCh-------hhHHHHHHHHHHCCCceEEEeccChHHHHHHH
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-------PMEKQLEQLEILYPEKARGVAKFNIPLAHMII 474 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~-------~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l 474 (586)
+|+|+||+.+.||++.|++|++++.+ ++++|+|+|+|.. .+.+.+++++.+++.++.+.+..+.+++..+|
T Consensus 195 ~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~ 274 (380)
T PRK15484 195 VLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYY 274 (380)
T ss_pred EEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHH
Confidence 89999999999999999999999865 7899999998752 35567777777777778888777888899999
Q ss_pred HhccEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 475 AGADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 475 ~~aDi~l~PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
+.||++++||.+ |+||++++|||+||+|||+|+.||+.|++.++.+|+++ +++.|+++++++|.+++++
T Consensus 275 ~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l---------~~~~d~~~la~~I~~ll~d- 344 (380)
T PRK15484 275 PLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHL---------AEPMTSDSIISDINRTLAD- 344 (380)
T ss_pred HhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEE---------eCCCCHHHHHHHHHHHHcC-
Confidence 999999999986 99999999999999999999999999999999999954 3789999999999999998
Q ss_pred CHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 554 GTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 554 ~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
++. .+|++++. .++|||+.++++|++.++
T Consensus 345 -~~~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 345 -PEL-TQIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred -HHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 553 67888774 589999999999998764
No 19
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=7.1e-37 Score=322.97 Aligned_cols=362 Identities=23% Similarity=0.232 Sum_probs=260.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||++++. |. .||.+.++.+|+++|+++||+|++++...+...... ..++.+
T Consensus 1 mki~~~~~---p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~-----------------------~~~~~~ 52 (371)
T cd04962 1 MKIGIVCY---PT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY-----------------------SPNIFF 52 (371)
T ss_pred CceeEEEE---eC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh-----------------------ccCeEE
Confidence 89999972 43 699999999999999999999999987532110000 011111
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
..++.+.+... ....| .......+.+.++. ++|| |||+|.+.....+.
T Consensus 53 ~~~~~~~~~~~-----~~~~~--------------~~~~~~~l~~~i~~------------~~~d-ivh~~~~~~~~~~~ 100 (371)
T cd04962 53 HEVEVPQYPLF-----QYPPY--------------DLALASKIAEVAKR------------YKLD-LLHVHYAVPHAVAA 100 (371)
T ss_pred EEecccccchh-----hcchh--------------HHHHHHHHHHHHhc------------CCcc-EEeecccCCccHHH
Confidence 11111110000 00000 01122333333333 2699 99999766544444
Q ss_pred HHHh-hccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 245 YLKT-MYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 245 ~l~~-~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
++.. ..+. .++|+++++|+..... .+. . .....+.+..++.+|.++++
T Consensus 101 ~~~~~~~~~----~~~~~i~~~h~~~~~~---------~~~--------------~----~~~~~~~~~~~~~~d~ii~~ 149 (371)
T cd04962 101 YLAREILGK----KDLPVVTTLHGTDITL---------VGQ--------------D----PSFQPATRFSIEKSDGVTAV 149 (371)
T ss_pred HHHHHhcCc----CCCcEEEEEcCCcccc---------ccc--------------c----ccchHHHHHHHhhCCEEEEc
Confidence 4332 2211 3789999999643210 000 0 01123456678899999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
|+..++.+.+. ++ . ..++.+||||+|...+.+.. ....+++++++. +.+
T Consensus 150 s~~~~~~~~~~--~~-~------~~~i~vi~n~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~ 198 (371)
T cd04962 150 SESLRQETYEL--FD-I------TKEIEVIPNFVDEDRFRPKP--------------------DEALKRRLGAPE--GEK 198 (371)
T ss_pred CHHHHHHHHHh--cC-C------cCCEEEecCCcCHhhcCCCc--------------------hHHHHHhcCCCC--CCe
Confidence 99999988752 21 1 23799999999988776543 234456777764 448
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccEE
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
+++++||+.+.||++.+++|+.++.+ .+++|+|+|+|+ ..+.++++..+.+ +++.+.+. .+++..+++.||++
T Consensus 199 ~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~~d~~ 274 (371)
T cd04962 199 VLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGP--ERSPAERLARELGLQDDVLFLGK--QDHVEELLSIADLF 274 (371)
T ss_pred EEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCc--CHHHHHHHHHHcCCCceEEEecC--cccHHHHHHhcCEE
Confidence 89999999999999999999999876 579999999997 3455666666554 35666663 34577899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE 560 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~ 560 (586)
++||.+|++|++++|||++|+|||+++.||..|++.++.+|+++ +++|+++++++|.+++++ ++.+.+
T Consensus 275 v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~----------~~~~~~~l~~~i~~l~~~--~~~~~~ 342 (371)
T cd04962 275 LLPSEKESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLV----------DVGDVEAMAEYALSLLED--DELWQE 342 (371)
T ss_pred EeCCCcCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEc----------CCCCHHHHHHHHHHHHhC--HHHHHH
Confidence 99999999999999999999999999999999999999999997 999999999999999998 888888
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 561 MMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 561 ~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
|++++. .++|||+.++++|.+.+.
T Consensus 343 ~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 343 FSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888874 578999999999998764
No 20
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=2.1e-37 Score=331.96 Aligned_cols=274 Identities=20% Similarity=0.225 Sum_probs=221.9
Q ss_pred CCCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCc
Q 007873 226 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (586)
Q Consensus 226 ~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (586)
.++| +||+|.++.+.....++.... ...|+++++|+...... .. ...
T Consensus 117 ~~~d-iihaH~~~~~~~~~~~~~~~~-----~~~~~~~t~Hg~d~~~~---------~~------------------~~~ 163 (406)
T PRK15427 117 FVAD-VFIAHFGPAGVTAAKLRELGV-----LRGKIATIFHGIDISSR---------EV------------------LNH 163 (406)
T ss_pred CCCC-EEEEcCChHHHHHHHHHHhCC-----CCCCeEEEEcccccccc---------hh------------------hhh
Confidence 3699 999999887766666654211 24467889996432100 00 000
Q ss_pred chhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHH
Q 007873 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (586)
Q Consensus 306 ~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (586)
...+++..++++|.++++|+..++.+.+ +|++.+ ++.+||||+|.+.|.+....
T Consensus 164 ~~~~~~~~~~~ad~vv~~S~~~~~~l~~---~g~~~~------ki~vi~nGvd~~~f~~~~~~----------------- 217 (406)
T PRK15427 164 YTPEYQQLFRRGDLMLPISDLWAGRLQK---MGCPPE------KIAVSRMGVDMTRFSPRPVK----------------- 217 (406)
T ss_pred hhHHHHHHHHhCCEEEECCHHHHHHHHH---cCCCHH------HEEEcCCCCCHHHcCCCccc-----------------
Confidence 1124566788999999999999999885 566655 89999999999988764311
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEE
Q 007873 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARG 461 (586)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~ 461 (586)
...+.+.|+|+||+.++||++.+++|++.+.+ ++++|+|+|+|+ .++.++++..+++ +++.+
T Consensus 218 ------------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~--~~~~l~~~~~~~~l~~~V~~ 283 (406)
T PRK15427 218 ------------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP--WERRLRTLIEQYQLEDVVEM 283 (406)
T ss_pred ------------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch--hHHHHHHHHHHcCCCCeEEE
Confidence 11234679999999999999999999999975 689999999998 5677777777665 46888
Q ss_pred EeccChHHHHHHHHhccEEEEcCCC------CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCC
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSRF------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD 535 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~~------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~ 535 (586)
.+..+.+++.++|+.||++++||.. |++|++++|||+||+|||+|+.||+.|++.++.+|+++ +
T Consensus 284 ~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv----------~ 353 (406)
T PRK15427 284 PGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLV----------P 353 (406)
T ss_pred eCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEe----------C
Confidence 8877888899999999999999974 99999999999999999999999999999999999998 9
Q ss_pred CCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 536 PVDVAAVSTTVRRALA-TYGTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 536 ~~d~~~la~~I~~ll~-~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
++|+++|+++|.++++ + ++.+++|++++. .++|+|+.+++++.+.++
T Consensus 354 ~~d~~~la~ai~~l~~~d--~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 354 ENDAQALAQRLAAFSQLD--TDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred CCCHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999 7 788889999884 589999999999998764
No 21
>PLN00142 sucrose synthase
Probab=100.00 E-value=6.8e-37 Score=341.45 Aligned_cols=320 Identities=17% Similarity=0.197 Sum_probs=223.9
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
.|| +||+|.|.+++++..++..+ ++|.|+|.|.+....... .+...-.....+.. ...
T Consensus 408 ~PD-lIHaHYwdsg~vA~~La~~l-------gVP~v~T~HsL~k~K~~~-~~~~~~~~e~~y~~-------------~~r 465 (815)
T PLN00142 408 KPD-LIIGNYSDGNLVASLLAHKL-------GVTQCTIAHALEKTKYPD-SDIYWKKFDDKYHF-------------SCQ 465 (815)
T ss_pred CCC-EEEECCccHHHHHHHHHHHh-------CCCEEEEcccchhhhccc-cCCcccccchhhhh-------------hhc
Confidence 499 99999999999999999874 999999999875422210 00000000001000 011
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHH-------hcCccCCCc-chhhh-----hccCeeEecCCcccCCcCCCCcc--ccc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQEL-------VSGEDKGVE-LDNII-----RKTGIKGIVNGMDVQEWNPLTDK--YIG 371 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l-------~~~~~~g~~-~~~~~-----~~~~i~vI~ngvd~~~~~p~~~~--~~~ 371 (586)
+.....++..||.|++.|......+ .+...+..+ +.+++ -..++.+||+|+|...|.|...+ .+.
T Consensus 466 ~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~ 545 (815)
T PLN00142 466 FTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLT 545 (815)
T ss_pred hHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHH
Confidence 2334567889999999998776432 121111111 01110 02388999999999999875421 000
Q ss_pred cccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCC-h------
Q 007873 372 VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK-K------ 442 (586)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~-~------ 442 (586)
.-++. .+....+....++.+|+..+++.++|+++||+.++||++.|++|+.++.+ ++++|+|+|+|. .
T Consensus 546 ~l~n~---I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ 622 (815)
T PLN00142 546 SLHPS---IEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDR 622 (815)
T ss_pred hhccc---chhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccH
Confidence 00000 01111223445567887666677899999999999999999999998754 579999999872 1
Q ss_pred hh---HHHHHHHHHHCC--CceEEEeccC----hHHHHHHHH-hccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcc
Q 007873 443 PM---EKQLEQLEILYP--EKARGVAKFN----IPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 512 (586)
Q Consensus 443 ~~---~~~l~~l~~~~~--~~v~~~~~~~----~~~~~~~l~-~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~ 512 (586)
+. .+.+.+++.+++ +++.+.+... .+++..+++ .+|++++||++|+||++++|||+||+|||+|+.||+.
T Consensus 623 ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~ 702 (815)
T PLN00142 623 EEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPA 702 (815)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHH
Confidence 11 134666666665 4566654322 234445555 5799999999999999999999999999999999999
Q ss_pred cccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH----HhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 513 DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL----ATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 513 e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll----~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
|+|.+|.+|+++ +|.|+++++++|.+++ ++ ++.+++|+++++ .++|||+.+++++++..
T Consensus 703 EIV~dG~tG~LV----------~P~D~eaLA~aI~~lLekLl~D--p~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 703 EIIVDGVSGFHI----------DPYHGDEAANKIADFFEKCKED--PSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHhcCCCcEEEe----------CCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999998 9999999999998766 45 788999999985 47899999999998743
No 22
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.9e-36 Score=324.10 Aligned_cols=378 Identities=18% Similarity=0.189 Sum_probs=254.6
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
|||||+..||+ ...+|+++|+++||+|+++|+....... .|++++
T Consensus 1 ~il~~~~~~p~---------~~~~la~~L~~~G~~v~~~~~~~~~~~~--------------------------~~v~~~ 45 (396)
T cd03818 1 RILFVHQNFPG---------QFRHLAPALAAQGHEVVFLTEPNAAPPP--------------------------GGVRVV 45 (396)
T ss_pred CEEEECCCCch---------hHHHHHHHHHHCCCEEEEEecCCCCCCC--------------------------CCeeEE
Confidence 69999998754 2567999999999999999987432111 035555
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.+..+..-. ... ..|...+.......+++.+.+..+.. ..++|| |||+|.... .+.+
T Consensus 46 ~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~pd-vi~~h~~~~--~~~~ 102 (396)
T cd03818 46 RYRPPRGPT-------SGT------HPYLREFEEAVLRGQAVARALLALRA-------KGFRPD-VIVAHPGWG--ETLF 102 (396)
T ss_pred EecCCCCCC-------CCC------CccchhHHHHHHHHHHHHHHHHHHHh-------cCCCCC-EEEECCccc--hhhh
Confidence 443221101 011 11344443333333444444443321 135799 999996432 2334
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
++..+ +++|+|..+|-... . .. ...+....+..... ...............+..+|.++++|+
T Consensus 103 l~~~~------~~~~~v~~~~~~~~-~--~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ad~vi~~s~ 165 (396)
T cd03818 103 LKDVW------PDAPLIGYFEFYYR-A--EG---ADVGFDPEFPPSLD-----DALRLRNRNALILLALAQADAGVSPTR 165 (396)
T ss_pred HHHhC------CCCCEEEEEeeeec-C--CC---CCCCCCCCCCCchh-----HHHHHHHhhhHhHHHHHhCCEEECCCH
Confidence 55443 57899887763211 0 00 00000000000000 000000001113456889999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
..++.+.+. + ..++.+||||+|.+.|.|.... ....+...+++ ++.++|
T Consensus 166 ~~~~~~~~~--~---------~~ki~vI~ngvd~~~f~~~~~~------------------~~~~~~~~~~~--~~~~~i 214 (396)
T cd03818 166 WQRSTFPAE--L---------RSRISVIHDGIDTDRLRPDPQA------------------RLRLPNGRVLT--PGDEVI 214 (396)
T ss_pred HHHhhCcHh--h---------ccceEEeCCCccccccCCCchh------------------hhcccccccCC--CCCeEE
Confidence 999887641 1 1389999999999999875421 11111122222 345799
Q ss_pred EEEec-CccccCHHHHHHHHhhccc--CCeEEEEEeCCCh-----------hhHHHHHHHHHHC-CCceEEEeccChHHH
Q 007873 406 GFIGR-LEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-----------PMEKQLEQLEILY-PEKARGVAKFNIPLA 470 (586)
Q Consensus 406 ~~iGr-l~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~-----------~~~~~l~~l~~~~-~~~v~~~~~~~~~~~ 470 (586)
+|+|| ++++||++.+++|++++.+ ++++|+|+|++.. ..+..++++..+. .+++.+.+..+.+++
T Consensus 215 ~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~ 294 (396)
T cd03818 215 TFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQY 294 (396)
T ss_pred EEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHH
Confidence 99998 9999999999999999865 7999999997421 1223344444322 246888888888889
Q ss_pred HHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
..+|+.||++++||..|++|++++||||||+|||+|+.||+.|++.++.+|+++ +++|+++++++|.+++
T Consensus 295 ~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv----------~~~d~~~la~~i~~ll 364 (396)
T cd03818 295 LALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLV----------DFFDPDALAAAVIELL 364 (396)
T ss_pred HHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEc----------CCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHH
Q 007873 551 ATYGTQALAEMMKNGM---AQDLSWKVSIGTVQE 581 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~ 581 (586)
++ ++.+.+|+++++ .++|||+.++++|++
T Consensus 365 ~~--~~~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 365 DD--PARRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred hC--HHHHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 98 788888999885 467999999999874
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=5.7e-36 Score=318.64 Aligned_cols=381 Identities=23% Similarity=0.283 Sum_probs=268.6
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
+++++.+...+| ..||++.++.+|+++|+++||+|.|++.......... ....+|+.+
T Consensus 7 ~~~~~~~~~~~~--~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~--------------------~~~~~~~~~ 64 (398)
T cd03800 7 LHGSPLAQPGGA--DTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI--------------------VELAPGVRV 64 (398)
T ss_pred ccccccccCCCC--CCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc--------------------cccccceEE
Confidence 455555544444 3799999999999999999999999997633211100 011234555
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
+.++...... ... .........+...+...++... .+|| +||+|.+..+..+.
T Consensus 65 ~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~~~~~~----------~~~D-iv~~~~~~~~~~~~ 117 (398)
T cd03800 65 VRVPAGPAEY---------LPK-------EELWPYLDEFADDLLRFLRREG----------GRPD-LIHAHYWDSGLVAL 117 (398)
T ss_pred EecccccccC---------CCh-------hhcchhHHHHHHHHHHHHHhcC----------CCcc-EEEEecCccchHHH
Confidence 5443211100 000 0000011123334444444321 1599 99999988877776
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
.+.+. .++|+|++.|+........ .. .... ..........+..++.+|.++++|
T Consensus 118 ~~~~~-------~~~~~i~~~h~~~~~~~~~------~~-~~~~------------~~~~~~~~~~~~~~~~ad~ii~~s 171 (398)
T cd03800 118 LLARR-------LGIPLVHTFHSLGAVKRRH------LG-AADT------------YEPARRIEAEERLLRAADRVIAST 171 (398)
T ss_pred HHHhh-------cCCceEEEeecccccCCcc------cc-cccc------------cchhhhhhHHHHHHhhCCEEEEcC
Confidence 66655 4899999999754311100 00 0000 000111234466788999999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+..++.+.+. ++.+ ..++.+||||+|...|.+.... ...++..+.+ ++.++
T Consensus 172 ~~~~~~~~~~--~~~~------~~~~~vi~ng~~~~~~~~~~~~-------------------~~~~~~~~~~--~~~~~ 222 (398)
T cd03800 172 PQEAEELYSL--YGAY------PRRIRVVPPGVDLERFTPYGRA-------------------EARRARLLRD--PDKPR 222 (398)
T ss_pred HHHHHHHHHH--cccc------ccccEEECCCCCccceecccch-------------------hhHHHhhccC--CCCcE
Confidence 9998888752 2222 2368999999999888765421 1113444444 34589
Q ss_pred EEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChh----hHHHHHHHHHHCC--CceEEEeccChHHHHHHHHh
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKP----MEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~----~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~ 476 (586)
|+|+||+.+.||++.+++|+..+.+ ++++|+++|++... ....++++...++ .++.+.+..+.+++..+++.
T Consensus 223 i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 302 (398)
T cd03800 223 ILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRA 302 (398)
T ss_pred EEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHh
Confidence 9999999999999999999999975 68999999987632 2334555555544 46888888888889999999
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHH
Q 007873 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ 556 (586)
Q Consensus 477 aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~ 556 (586)
||++++||..|++|++++|||++|+|||+++.+|..|++.++.+|+++ +++|+++++++|.+++++ ++
T Consensus 303 adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~----------~~~~~~~l~~~i~~l~~~--~~ 370 (398)
T cd03800 303 ADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLV----------DPRDPEALAAALRRLLTD--PA 370 (398)
T ss_pred CCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEe----------CCCCHHHHHHHHHHHHhC--HH
Confidence 999999999999999999999999999999999999999999999998 999999999999999998 88
Q ss_pred HHHHHHHHHHH---hcCCHHHHHHHHHH
Q 007873 557 ALAEMMKNGMA---QDLSWKVSIGTVQE 581 (586)
Q Consensus 557 ~~~~~~~~~~~---~~fsw~~~a~~~~~ 581 (586)
.+++|++++.+ ++|||+.++++|++
T Consensus 371 ~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 398 (398)
T cd03800 371 LRRRLSRAGLRRARARYTWERVAARLLE 398 (398)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhC
Confidence 88999998853 89999999999864
No 24
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=8.1e-36 Score=318.59 Aligned_cols=377 Identities=15% Similarity=0.101 Sum_probs=238.1
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCC-CeEEEEEecCCCccc--cCCcceEEEEEeCCeeeEEEEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPRYDQYKD--AWDTDVVIELKVGDKIEKVRFFHCHK 159 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G-h~V~vvt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (586)
++|||++++..|.|| .+|+...+..++..|+++| |+|++|+|.++.-.+ .+.. ++.+....++..+.+..
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~----~~~f~~~~~~e~~~~~~- 75 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPN----KITFSSPSEQEAYVRQW- 75 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccc----cccccCchhhhhhhhhh-
Confidence 579999999999998 9999999999999999999 899999998642111 0110 00000000000000000
Q ss_pred CCceEEEEcCccccccccCCCCCcccCCCCCCCCcchh---HHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecC
Q 007873 160 RGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQ---LRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND 236 (586)
Q Consensus 160 ~gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~ 236 (586)
.+-.++++....+. .| .+.+ .+.......+.+.++. ++|| |||.|+
T Consensus 76 ~~~~v~r~~s~~~p----------~y--------p~r~~~~~r~~~~~~~i~~~l~~------------~~pD-VIHv~t 124 (462)
T PLN02846 76 LEERISFLPKFSIK----------FY--------PGKFSTDKRSILPVGDISETIPD------------EEAD-IAVLEE 124 (462)
T ss_pred ccCeEEEecccccc----------cC--------cccccccccccCChHHHHHHHHh------------cCCC-EEEEcC
Confidence 01112222211110 01 1100 0111112233344443 3699 999987
Q ss_pred -CccchH--HHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCC-CCCcCCcchhhhhH
Q 007873 237 -WHTSLI--PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGY-NKPVRGRKINWMKA 312 (586)
Q Consensus 237 -~~~~~~--~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 312 (586)
++.+.+ +..+... .++ +|.+.|.-.. . | +...+. +. ...+.....+|+++
T Consensus 125 P~~LG~~~~g~~~~~k-------~~~-vV~tyHT~y~-~-Y----~~~~~~------------g~~~~~l~~~~~~~~~r 178 (462)
T PLN02846 125 PEHLTWYHHGKRWKTK-------FRL-VIGIVHTNYL-E-Y----VKREKN------------GRVKAFLLKYINSWVVD 178 (462)
T ss_pred chhhhhHHHHHHHHhc-------CCc-EEEEECCChH-H-H----HHHhcc------------chHHHHHHHHHHHHHHH
Confidence 333443 2222221 234 8889996321 0 0 000000 00 00001112233322
Q ss_pred HhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 313 ~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
. .+|.++++|+...+ +.+ .+...++|+|.+.|.|.... +++
T Consensus 179 ~--~~d~vi~pS~~~~~-l~~---------------~~i~~v~GVd~~~f~~~~~~---------------------~~~ 219 (462)
T PLN02846 179 I--YCHKVIRLSAATQD-YPR---------------SIICNVHGVNPKFLEIGKLK---------------------LEQ 219 (462)
T ss_pred H--hcCEEEccCHHHHH-Hhh---------------CEEecCceechhhcCCCccc---------------------Hhh
Confidence 2 48999999986655 443 34445689999988876421 222
Q ss_pred HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
..+ +.+.-.+.++|+||+.++||++.|++|++++.+ ++++|+|+|+|+ .++.+++++.+++.++..+..+...
T Consensus 220 ~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp--~~~~L~~~a~~l~l~~~vf~G~~~~-- 294 (462)
T PLN02846 220 QKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGE--DSDEVKAAAEKLELDVRVYPGRDHA-- 294 (462)
T ss_pred hcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCc--cHHHHHHHHHhcCCcEEEECCCCCH--
Confidence 222 222113579999999999999999999998865 689999999999 6777888888776434344444332
Q ss_pred HHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
..+++.+|+||+||.+|+||++++||||||+|||+++.++ .+++.++.+|+.+ .|+++++++|.+++
T Consensus 295 ~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~------------~~~~~~a~ai~~~l 361 (462)
T PLN02846 295 DPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTY------------DDGKGFVRATLKAL 361 (462)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEec------------CCHHHHHHHHHHHH
Confidence 2599999999999999999999999999999999999998 5999999999975 68999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007873 551 ATYGTQALAEMMKNGMAQDLSWKVSIGTVQEEDSL 585 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~ 585 (586)
++. + .+++..+ .+.|||+.+++++++.+++
T Consensus 362 ~~~-~---~~~~~~a-~~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 362 AEE-P---APLTDAQ-RHELSWEAATERFLRVADL 391 (462)
T ss_pred ccC-c---hhHHHHH-HHhCCHHHHHHHHHHHhcc
Confidence 862 2 2223333 3699999999999998764
No 25
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=2.4e-35 Score=314.19 Aligned_cols=229 Identities=16% Similarity=0.167 Sum_probs=185.9
Q ss_pred hhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHH
Q 007873 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (586)
Q Consensus 309 ~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (586)
+.+..++.+|.|+++|+..++.+.+. ++.. ....+.+|+||+|.+.|.|.... .
T Consensus 147 ~e~~~~~~ad~ii~~s~~~~~~~~~~--~~~~-----~~~~~~vi~n~vd~~~~~~~~~~-------------------~ 200 (392)
T cd03805 147 LEEFTTGMADKIVVNSNFTASVFKKT--FPSL-----AKNPREVVYPCVDTDSFESTSED-------------------P 200 (392)
T ss_pred HHHHHhhCceEEEEcChhHHHHHHHH--hccc-----ccCCcceeCCCcCHHHcCccccc-------------------c
Confidence 34566889999999999999988752 2211 11245699999999888765321 0
Q ss_pred HHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc-----CCeEEEEEeCCCh------hhHHHHHHHHHH-C-
Q 007873 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-----ENVQIIVLGTGKK------PMEKQLEQLEIL-Y- 455 (586)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~-----~~v~lvIvG~g~~------~~~~~l~~l~~~-~- 455 (586)
.+.....+ ++.++|+++||+.+.||++.+++|++++.+ ++++|+|+|+|+. .+.+.++++..+ +
T Consensus 201 -~~~~~~~~--~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (392)
T cd03805 201 -DPGLLIPK--SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLL 277 (392)
T ss_pred -cccccccC--CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcC
Confidence 11122222 345899999999999999999999999864 4899999999863 234677777766 3
Q ss_pred -CCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCC
Q 007873 456 -PEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 534 (586)
Q Consensus 456 -~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v 534 (586)
.+++.+.+..+.+++..+++.||++++||..|+||++++|||+||+|||+++.||..|++.++.+|+++
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~---------- 347 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLC---------- 347 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEe----------
Confidence 357898888888888999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHH
Q 007873 535 DPVDVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTV 579 (586)
Q Consensus 535 ~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~ 579 (586)
++ |+++++++|.+++++ ++.+++|++++. .++|||+.+++++
T Consensus 348 ~~-~~~~~a~~i~~l~~~--~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 348 EP-TPEEFAEAMLKLAND--PDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred CC-CHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 65 999999999999998 778888999884 5889999998864
No 26
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.3e-34 Score=300.90 Aligned_cols=328 Identities=18% Similarity=0.192 Sum_probs=236.2
Q ss_pred ceEEEEeccccC--ccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCc
Q 007873 85 LNILFVGTEVAP--WSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (586)
Q Consensus 85 MkIl~v~~~~~P--~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (586)
|||++|++.+.| ....||.++++.+|+.+|.++||+|.++++........ ..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~-----------------~~--------- 54 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP-----------------LV--------- 54 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc-----------------ee---------
Confidence 899999998744 23589999999999999999999999999863211100 00
Q ss_pred eEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchH
Q 007873 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (586)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~ 242 (586)
. ......... +.............+.+.++. .+|| |||+|.+...+.
T Consensus 55 ~--~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~------------~~~D-ivh~~~~~~~~~ 101 (335)
T cd03802 55 P--VVPEPLRLD------------------APGRDRAEAEALALAERALAA------------GDFD-IVHNHSLHLPLP 101 (335)
T ss_pred e--ccCCCcccc------------------cchhhHhhHHHHHHHHHHHhc------------CCCC-EEEecCcccchh
Confidence 0 000000000 000000111122222233322 2699 999999877665
Q ss_pred HHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEE
Q 007873 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (586)
Q Consensus 243 ~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vit 322 (586)
+... .++|+++++|+..... ...........+.+++
T Consensus 102 ---~~~~-------~~~~~v~~~h~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 137 (335)
T cd03802 102 ---FARP-------LPVPVVTTLHGPPDPE----------------------------------LLKLYYAARPDVPFVS 137 (335)
T ss_pred ---hhcc-------cCCCEEEEecCCCCcc----------------------------------cchHHHhhCcCCeEEE
Confidence 2221 5889999999754310 0112334567889999
Q ss_pred eCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (586)
+|+..++.+.. . .++.+||||+|.+.|.+.. .+.
T Consensus 138 ~s~~~~~~~~~---~----------~~~~vi~ngvd~~~~~~~~---------------------------------~~~ 171 (335)
T cd03802 138 ISDAQRRPWPP---L----------PWVATVHNGIDLDDYPFRG---------------------------------PKG 171 (335)
T ss_pred ecHHHHhhccc---c----------cccEEecCCcChhhCCCCC---------------------------------CCC
Confidence 99998887663 1 2899999999998887532 134
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHH---CCCceEEEeccChHHHHHHHHhccE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEIL---YPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~---~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
..|+|+||+.+.||++.+++++.+. +++|+|+|.|.. ...+...... ..+++.+.+..+.+++..+++.+|+
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~~---~~~l~i~G~~~~--~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~ 246 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARRA---GIPLKLAGPVSD--PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA 246 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHhc---CCeEEEEeCCCC--HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE
Confidence 6899999999999999999998764 799999999973 2222222222 2467999988888888899999999
Q ss_pred EEEcCCC-CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHH
Q 007873 480 ILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 558 (586)
Q Consensus 480 ~l~PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~ 558 (586)
+++||.+ |+||++++|||+||+|||+++.||..|++.++.+|+++ ++ +++++++|.++++. ..
T Consensus 247 ~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~----------~~--~~~l~~~l~~l~~~--~~-- 310 (335)
T cd03802 247 LLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLV----------DS--VEELAAAVARADRL--DR-- 310 (335)
T ss_pred EEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEe----------CC--HHHHHHHHHHHhcc--HH--
Confidence 9999985 99999999999999999999999999999999999997 44 99999999998764 21
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 559 AEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 559 ~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
+..++...++|||+.++++|++.+
T Consensus 311 -~~~~~~~~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 311 -AACRRRAERRFSAARMVDDYLALY 334 (335)
T ss_pred -HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 222333569999999999999865
No 27
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.2e-35 Score=310.13 Aligned_cols=356 Identities=18% Similarity=0.186 Sum_probs=248.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC-CccccCCcceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD-QYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
-||++|...+ ..||++.++.+|+++|.+.||++.+++.... .+... ....|+.
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~i~ 55 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKR----------------------IQRPDVA 55 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHH----------------------HHhcCce
Confidence 4899998764 3699999999999999999999999984321 11110 0112455
Q ss_pred EEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH
Q 007873 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (586)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~ 243 (586)
++.+..+.. + ++ .+...+.+.++.. +|| |||+|...+. ..
T Consensus 56 ~~~~~~~~~--~--------------------~~----~~~~~l~~~l~~~------------~~D-ivh~~~~~~~-~~ 95 (374)
T TIGR03088 56 FYALHKQPG--K--------------------DV----AVYPQLYRLLRQL------------RPD-IVHTRNLAAL-EA 95 (374)
T ss_pred EEEeCCCCC--C--------------------Ch----HHHHHHHHHHHHh------------CCC-EEEEcchhHH-HH
Confidence 554421100 0 00 1222333444433 599 9999975432 22
Q ss_pred HHHHhhccCCCCCCCceE-EEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhH-HhhcCCEEE
Q 007873 244 CYLKTMYKPKGMYKSAKV-VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA-GILESDMVL 321 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pv-v~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~vi 321 (586)
.+..+. .+.|+ +++.|....... .. ......++++ ....+|.++
T Consensus 96 ~~~~~~-------~~~~~~i~~~h~~~~~~~-----------~~----------------~~~~~~~~~~~~~~~~~~~i 141 (374)
T TIGR03088 96 QLPAAL-------AGVPARIHGEHGRDVFDL-----------DG----------------SNWKYRWLRRLYRPLIHHYV 141 (374)
T ss_pred HHHHHh-------cCCCeEEEeecCcccccc-----------hh----------------hHHHHHHHHHHHHhcCCeEE
Confidence 222222 24443 444453211000 00 0011234433 334689999
Q ss_pred EeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCC
Q 007873 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (586)
Q Consensus 322 tvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (586)
++|+..++.+.+ .++++.+ ++.+|+||+|.+.|.|.... +...++....+ ++
T Consensus 142 ~vs~~~~~~~~~--~~~~~~~------~~~vi~ngvd~~~~~~~~~~------------------~~~~~~~~~~~--~~ 193 (374)
T TIGR03088 142 AVSRDLEDWLRG--PVKVPPA------KIHQIYNGVDTERFHPSRGD------------------RSPILPPDFFA--DE 193 (374)
T ss_pred EeCHHHHHHHHH--hcCCChh------hEEEeccCccccccCCCccc------------------hhhhhHhhcCC--CC
Confidence 999999998875 2455433 89999999999888765321 11222222222 34
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHH
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMI 473 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~ 473 (586)
.++|+++||+.++||++.+++|+.++.+ ++++|+++|+|+ ..+.++++..+++ .++.+.+ ..++...+
T Consensus 194 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g--~~~~~~~~ 269 (374)
T TIGR03088 194 SVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGP--ARGACEQMVRAAGLAHLVWLPG--ERDDVPAL 269 (374)
T ss_pred CeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCc--hHHHHHHHHHHcCCcceEEEcC--CcCCHHHH
Confidence 5899999999999999999999998854 279999999997 4566777766654 2333333 24567789
Q ss_pred HHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 474 l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
++.||++++||.+|+||++++|||+||+|||+|+.||..|++.++.+|+++ +++|+++++++|.+++++
T Consensus 270 ~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~----------~~~d~~~la~~i~~l~~~- 338 (374)
T TIGR03088 270 MQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALV----------PPGDAVALARALQPYVSD- 338 (374)
T ss_pred HHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEe----------CCCCHHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999999999999998 999999999999999998
Q ss_pred CHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 554 GTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 554 ~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
++.+.++++++. .++|||+.++++|++.+.
T Consensus 339 -~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 339 -PAARRAHGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred -HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888888874 579999999999998764
No 28
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=2.8e-34 Score=321.50 Aligned_cols=470 Identities=19% Similarity=0.245 Sum_probs=353.3
Q ss_pred eEEEEecccc-----CccccchHHHHhhhhHHHHHhCCCeEEEEEecCCC-ccc--------------cC----------
Q 007873 86 NILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ-YKD--------------AW---------- 135 (586)
Q Consensus 86 kIl~v~~~~~-----P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~-~~~--------------~~---------- 135 (586)
-+++++.||. |- ..||+|...+...++++..|....-++..|.+ |.. .|
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 4448887754 42 58999999999999999999999999877642 111 11
Q ss_pred ----CcceEEEEEeCCeeeEEEEEEEEeCCceEEEEcCccccccccCCCCC-cccCCCCCCCCcchhHH---HHHHHHHH
Q 007873 136 ----DTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQS-KIYGPRTGEDYQDNQLR---FSLLCQAA 207 (586)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~-~~y~~~~~~~~~~~~~~---~~~~~~~~ 207 (586)
.....+.+.+.++...++..+....++++++++++.+-+..|.+... .+|++ |+..| +.+|+.+.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-------D~~~Rl~Qe~~Lg~ag 238 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-------DQETRIQQEILLGIGG 238 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-------cHHHHHHHHHHHHHHH
Confidence 11235566777777778888888889999999998753333333332 47863 35566 58999999
Q ss_pred HHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH-----HHHhh-ccCCC--CCCCceEEEEEcCCcccc--ccCcc
Q 007873 208 LEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-----YLKTM-YKPKG--MYKSAKVVFCIHNIAYQG--RFAFE 277 (586)
Q Consensus 208 ~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~-----~l~~~-~~~~~--~~~~~pvv~~iH~~~~~~--~~~~~ 277 (586)
+++++.+.+ .|| |||+||||++++++ ++... +.... -..+.+++||+|++.++| .|+..
T Consensus 239 l~~Lr~lg~----------~pd-ViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~ 307 (778)
T cd04299 239 VRALRALGI----------KPT-VYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPD 307 (778)
T ss_pred HHHHHHhCC----------CCe-EEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHH
Confidence 999988764 499 99999999999998 54321 10000 012578999999999999 89877
Q ss_pred cccc--------cCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHH---HHHHhcCccCCCcchhhhh
Q 007873 278 DFGL--------LNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY---AQELVSGEDKGVELDNIIR 346 (586)
Q Consensus 278 ~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~---~~~l~~~~~~g~~~~~~~~ 346 (586)
.+.. ++++.+....+....... ....+++++.++..|+.+.+||+-+ .+++......|.+++
T Consensus 308 l~~~~~~~~~~~lgl~~~~~~~lg~e~~~~---~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~---- 380 (778)
T cd04299 308 LVERYFGPYARELGLSRDRFLALGRENPGD---DPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVE---- 380 (778)
T ss_pred HHHHHhhHHHHHcCCCHHHHhhhccccccC---ccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcc----
Confidence 7632 566654433222111100 0124799999999999999999987 555554223444432
Q ss_pred ccCeeEecCCcccCCcC-CCCccccccccC---------------------ccccccccHHHHHHHHHHh----------
Q 007873 347 KTGIKGIVNGMDVQEWN-PLTDKYIGVKYD---------------------ASTVMDAKPLLKEALQAEV---------- 394 (586)
Q Consensus 347 ~~~i~vI~ngvd~~~~~-p~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~---------- 394 (586)
..++..|.||||...|. |..++.+ -+|. +....+.+..+|..|++.+
T Consensus 381 ~~~i~~ITNGVh~~~W~~P~~~~l~-~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~ 459 (778)
T cd04299 381 EVPIGHVTNGVHVPTWVAPEMRELY-DRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLR 459 (778)
T ss_pred cCceeceeCCcchhhhcCHHHHHHH-HHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34799999999999998 7766654 2331 2223356777777776664
Q ss_pred -----------CCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCC------hhhHHHHHHH
Q 007873 395 -----------GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK------KPMEKQLEQL 451 (586)
Q Consensus 395 -----------gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~------~~~~~~l~~l 451 (586)
+.+.+++.++|+|++|+.++||.+++++.+.++.+ .++||||+|++. +.+.+.+.++
T Consensus 460 ~g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~ 539 (778)
T cd04299 460 RGASAEEIGEADDVLDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEF 539 (778)
T ss_pred cCCchhhhhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHH
Confidence 55567788999999999999999999999888744 479999999987 5667788888
Q ss_pred HH--HCCCceEEEeccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEcc-
Q 007873 452 EI--LYPEKARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS- 526 (586)
Q Consensus 452 ~~--~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~- 526 (586)
+. .+++++.+...|+...++.++++||++++||+ +|+||++.+-||..|.+-+++..|...|.. ++.|||.+|.
T Consensus 540 a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~ 618 (778)
T cd04299 540 SRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDG 618 (778)
T ss_pred HhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCC
Confidence 87 67779999999999999999999999999999 999999999999999999999999999998 7899999974
Q ss_pred -ccccccCCCCCCHHHHHHHHHHHHH-hc-C------HHHHHHHHHHHHHh---cCCHHHHHHHHHHHh
Q 007873 527 -FSVDCEAVDPVDVAAVSTTVRRALA-TY-G------TQALAEMMKNGMAQ---DLSWKVSIGTVQEED 583 (586)
Q Consensus 527 -~~~~~~~v~~~d~~~la~~I~~ll~-~~-~------~~~~~~~~~~~~~~---~fsw~~~a~~~~~~~ 583 (586)
...|-+.-+..|+++|.+.|++.+- .+ . +..+.+|.+++|++ +|||+.++++|.+..
T Consensus 619 ~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 619 DEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred ccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 2233444556788999999976554 22 1 45789999999977 999999999999864
No 29
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=6.1e-34 Score=302.11 Aligned_cols=274 Identities=18% Similarity=0.150 Sum_probs=204.9
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
+|| |||+|++....++...+ . .++|+|++.|+..... ....
T Consensus 85 ~~D-vv~~h~~~~~~~~~~~~-~-------~~~~~i~~~H~~~~~~------------------------------~~~~ 125 (372)
T cd03792 85 DAD-VVVIHDPQPLALPLFKK-K-------RGRPWIWRCHIDLSSP------------------------------NRRV 125 (372)
T ss_pred CCC-EEEECCCCchhHHHhhh-c-------CCCeEEEEeeeecCCC------------------------------cHHH
Confidence 699 99999987544333222 1 3789999999633100 0012
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHH
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (586)
+.+++..+..+|.+++.|+.+.. .+++. .++ +||||+|+....... ..+..
T Consensus 126 ~~~~~~~~~~~d~~i~~~~~~~~-------~~~~~------~~~-vipngvd~~~~~~~~---------------~~~~~ 176 (372)
T cd03792 126 WDFLQPYIEDYDAAVFHLPEYVP-------PQVPP------RKV-IIPPSIDPLSGKNRE---------------LSPAD 176 (372)
T ss_pred HHHHHHHHHhCCEEeecHHHhcC-------CCCCC------ceE-EeCCCCCCCccccCC---------------CCHHH
Confidence 34567778899999988843321 22321 244 999999965311100 11223
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCCh---hhHHHHHHHHHH--CCCce
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEIL--YPEKA 459 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~---~~~~~l~~l~~~--~~~~v 459 (586)
...+++++|++. +.++|+++||+.++||++.+++|++.+.+ ++++|+|+|+|+. ...+.++++... ...++
T Consensus 177 ~~~~~~~~~~~~--~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v 254 (372)
T cd03792 177 IEYILEKYGIDP--ERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDI 254 (372)
T ss_pred HHHHHHHhCCCC--CCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCe
Confidence 456777888864 45899999999999999999999998865 6899999999863 223334444432 33457
Q ss_pred EEEecc--ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCC
Q 007873 460 RGVAKF--NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPV 537 (586)
Q Consensus 460 ~~~~~~--~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~ 537 (586)
.+.+.. +.+++..+++.||++++||.+|+||++++|||+||+|||+|+.||+.+++.++.+|+++ +
T Consensus 255 ~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~----------~-- 322 (372)
T cd03792 255 HVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLV----------D-- 322 (372)
T ss_pred EEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEe----------C--
Confidence 666655 67888899999999999999999999999999999999999999999999999999986 3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 538 DVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 538 d~~~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
++++++.+|.+++++ ++.+++|++++. .++|||+.++++|++.++
T Consensus 323 ~~~~~a~~i~~ll~~--~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 TVEEAAVRILYLLRD--PELRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred CcHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 567899999999988 888899998884 478999999999998764
No 30
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.6e-33 Score=295.86 Aligned_cols=355 Identities=17% Similarity=0.175 Sum_probs=244.3
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++|+..++|. ..||+++++.+|+++|.++||+|.|+++....... ....+|++++
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~----------------------~~~~~~i~~~ 57 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK----------------------ETEYNGVRLI 57 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc----------------------ccccCCceEE
Confidence 789998765443 48999999999999999999999999976321110 1122466666
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.++.+.... ...+..-....+...+ . ++| ++|.|.+.....+..
T Consensus 58 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~--~-----------~~~-~~~i~~~~~~~~~~~ 101 (363)
T cd04955 58 HIPAPEIGG----------------------LGTIIYDILAILHALF--V-----------KRD-IDHVHALGPAIAPFL 101 (363)
T ss_pred EcCCCCccc----------------------hhhhHHHHHHHHHHHh--c-----------cCC-eEEEEecCccHHHHH
Confidence 554321000 0000011111111111 1 244 444443332222222
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchh-hhhHHhhcCCEEEEeC
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN-WMKAGILESDMVLTVS 324 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ad~vitvS 324 (586)
..... .+.|+++++|+..+... ..+ .+ ...... ..+..++.+|.++++|
T Consensus 102 ~~~~~------~~~~~v~~~h~~~~~~~---------~~~--------------~~-~~~~~~~~~~~~~~~ad~ii~~s 151 (363)
T cd04955 102 PLLRL------KGKKVVVNMDGLEWKRA---------KWG--------------RP-AKRYLKFGEKLAVKFADRLIADS 151 (363)
T ss_pred HHHHh------cCCCEEEEccCcceeec---------ccc--------------cc-hhHHHHHHHHHHHhhccEEEeCC
Confidence 11111 37899999997543110 000 00 001122 2355678999999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+..++.+.. .+|.+ . .+||||+|...+.+. ...++..+++ +.+.
T Consensus 152 ~~~~~~~~~--~~~~~--------~-~~i~ngv~~~~~~~~----------------------~~~~~~~~~~---~~~~ 195 (363)
T cd04955 152 PGIKEYLKE--KYGRD--------S-TYIPYGADHVVSSEE----------------------DEILKKYGLE---PGRY 195 (363)
T ss_pred HHHHHHHHH--hcCCC--------C-eeeCCCcChhhcchh----------------------hhhHHhcCCC---CCcE
Confidence 999999864 24432 3 899999998766441 1233445554 2356
Q ss_pred EEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC--hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
++|+||+.+.||++.+++|+.++.. +++|+|+|+|+ ..+.+.+++. ....+++.+.+..+.+++..+++.||++++
T Consensus 196 i~~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~~~~~~~~~~~-~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ 273 (363)
T cd04955 196 YLLVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHNTPYGKLLKEK-AAADPRIIFVGPIYDQELLELLRYAALFYL 273 (363)
T ss_pred EEEEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCcchHHHHHHHH-hCCCCcEEEccccChHHHHHHHHhCCEEEe
Confidence 8899999999999999999999864 89999999985 2344444421 233457888888888888899999999999
Q ss_pred cCCC-CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 007873 483 PSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 561 (586)
Q Consensus 483 PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 561 (586)
||.. |+||++++|||+||+|||+|+.|+..|++.+ +|+++ ++.|+ +++.|.+++++ ++.+.++
T Consensus 274 ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~----------~~~~~--l~~~i~~l~~~--~~~~~~~ 337 (363)
T cd04955 274 HGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYF----------KVGDD--LASLLEELEAD--PEEVSAM 337 (363)
T ss_pred CCccCCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEe----------cCchH--HHHHHHHHHhC--HHHHHHH
Confidence 9999 9999999999999999999999999999987 78877 77665 99999999998 7888888
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHh
Q 007873 562 MKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 562 ~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
++++. .++|||+.++++|++.+
T Consensus 338 ~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 338 AKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 88874 46799999999999865
No 31
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=6.2e-34 Score=300.10 Aligned_cols=272 Identities=21% Similarity=0.270 Sum_probs=216.4
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
+|| +||+|....+.....+.+. .++|+++++|+........ .... . + +...
T Consensus 82 ~~d-vvh~~~~~~~~~~~~~~~~-------~~~p~i~~~h~~~~~~~~~---~~~~---~--------------~-~~~~ 132 (367)
T cd05844 82 RPD-LVHAHFGFDGVYALPLARR-------LGVPLVVTFHGFDATTSLA---LLLR---S--------------R-WALY 132 (367)
T ss_pred CCC-EEEeccCchHHHHHHHHHH-------cCCCEEEEEeCccccccch---hhcc---c--------------c-hhHH
Confidence 699 9999976655555444443 4899999999643211000 0000 0 0 0111
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHH
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (586)
....+..++.+|.++++|+..++.+.+ +|++.+ ++.+++||+|.+.+.|...
T Consensus 133 ~~~~~~~~~~~d~ii~~s~~~~~~~~~---~~~~~~------~i~vi~~g~d~~~~~~~~~------------------- 184 (367)
T cd05844 133 ARRRRRLARRAALFIAVSQFIRDRLLA---LGFPPE------KVHVHPIGVDTAKFTPATP------------------- 184 (367)
T ss_pred HHHHHHHHHhcCEEEECCHHHHHHHHH---cCCCHH------HeEEecCCCCHHhcCCCCC-------------------
Confidence 233456678999999999999999886 465544 8999999999887765421
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHC--CCceEEE
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGV 462 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~--~~~v~~~ 462 (586)
..+.++++|+|++.+.||++.+++|+..+.+ ++++|+|+|+|+ ..+.++++..++ ..++.+.
T Consensus 185 ------------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~ 250 (367)
T cd05844 185 ------------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGP--LLAALEALARALGLGGRVTFL 250 (367)
T ss_pred ------------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCch--HHHHHHHHHHHcCCCCeEEEC
Confidence 1244789999999999999999999999875 689999999987 556777777763 4578888
Q ss_pred eccChHHHHHHHHhccEEEEcCC------CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCC
Q 007873 463 AKFNIPLAHMIIAGADFILIPSR------FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 536 (586)
Q Consensus 463 ~~~~~~~~~~~l~~aDi~l~PS~------~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~ 536 (586)
+..+.+++..+++.||++++||. .|+||++++|||+||+|||+++.+|..|++.++.+|+++ ++
T Consensus 251 g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~----------~~ 320 (367)
T cd05844 251 GAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLV----------PE 320 (367)
T ss_pred CCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEE----------CC
Confidence 77788889999999999999997 499999999999999999999999999999999999998 89
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHH
Q 007873 537 VDVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQE 581 (586)
Q Consensus 537 ~d~~~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~ 581 (586)
+|+++++++|.+++++ ++.+.+|++++. .++|||+.+++++.+
T Consensus 321 ~d~~~l~~~i~~l~~~--~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 321 GDVAALAAALGRLLAD--PDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred CCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999999999999998 788888888874 578999999999875
No 32
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-35 Score=290.80 Aligned_cols=361 Identities=20% Similarity=0.262 Sum_probs=265.6
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
++|+.|+..|+|. .||++..++.|.+.|-+.||.|.++|..|.... .+| ...+|.++
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~------------------gir---ylt~glkV 57 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRV------------------GIR---YLTNGLKV 57 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCcc------------------cee---eecCCceE
Confidence 5899999999996 999999999999999999999999998864321 122 33467899
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
|+++-...++. .|-..+|+... ++ +..+ ++. +.. |||.|.-.+.+.--
T Consensus 58 yylp~~v~~n~---tT~ptv~~~~P------------ll-r~i~--lrE-------------~I~-ivhghs~fS~lahe 105 (426)
T KOG1111|consen 58 YYLPAVVGYNQ---TTFPTVFSDFP------------LL-RPIL--LRE-------------RIE-IVHGHSPFSYLAHE 105 (426)
T ss_pred EEEeeeeeecc---cchhhhhccCc------------cc-chhh--hhh-------------ceE-EEecCChHHHHHHH
Confidence 98876655443 23334443211 11 1111 111 245 99998766665543
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
.+.... ..|.++|||-|.+ |.+++++..- .-+.+...+.+.|++||+|
T Consensus 106 ~l~har-----tMGlktVfTdHSl-----fGfad~~si~----------------------~n~ll~~sL~~id~~IcVs 153 (426)
T KOG1111|consen 106 ALMHAR-----TMGLKTVFTDHSL-----FGFADIGSIL----------------------TNKLLPLSLANIDRIICVS 153 (426)
T ss_pred HHHHHH-----hcCceEEEecccc-----ccccchhhhh----------------------hcceeeeeecCCCcEEEEe
Confidence 332221 2488999999964 3333332110 0123345577899999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
...++...-+ -.++ +.++.+|||.++...|.|...+ - ...+...
T Consensus 154 htskentvlr--~~L~------p~kvsvIPnAv~~~~f~P~~~~---------------------------~-~S~~i~~ 197 (426)
T KOG1111|consen 154 HTSKENTVLR--GALA------PAKVSVIPNAVVTHTFTPDAAD---------------------------K-PSADIIT 197 (426)
T ss_pred ecCCCceEEE--eccC------HhHeeeccceeeccccccCccc---------------------------c-CCCCeeE
Confidence 9888776632 2333 4499999999999999995421 0 2234478
Q ss_pred EEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCCh--hhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~--~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
|+.++||-++||+|.|+++++++.+ |+++|+|+|+|++ .+++.+++.. +++.+...+..+.+++.+.|...|+|
T Consensus 198 ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~--l~~rV~~lG~v~h~~Vr~vl~~G~IF 275 (426)
T KOG1111|consen 198 IVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLF--LQDRVVMLGTVPHDRVRDVLVRGDIF 275 (426)
T ss_pred EEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhh--ccCceEEecccchHHHHHHHhcCcEE
Confidence 9999999999999999999999987 8999999999994 3555555554 34569999999999999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE 560 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~ 560 (586)
++||..|.||++++|||+||+|||++++||++|++.++ .-+ ..+.++++++++++++++..++ ..+
T Consensus 276 lntSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~-----------~~~~~~~dl~~~v~~ai~~~~~--~p~ 341 (426)
T KOG1111|consen 276 LNTSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MIT-----------LGEPGPDDLVGAVEKAITKLRT--LPL 341 (426)
T ss_pred eccHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-cee-----------ccCCChHHHHHHHHHHHHHhcc--Cch
Confidence 99999999999999999999999999999999999886 222 2677899999999999987322 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhc
Q 007873 561 MMKNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 561 ~~~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
--.+.+.+.|+|+.++++.++.+.
T Consensus 342 ~~h~~v~~~y~w~dVa~rTekvy~ 365 (426)
T KOG1111|consen 342 EFHDRVKKMYSWKDVAERTEKVYD 365 (426)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHH
Confidence 223446788999999999988653
No 33
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=1.2e-33 Score=296.11 Aligned_cols=338 Identities=22% Similarity=0.251 Sum_probs=244.0
Q ss_pred ccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEEEEcCccccccccC
Q 007873 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWG 178 (586)
Q Consensus 99 ~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~ 178 (586)
..||++.++.+|+++|+++||+|.++++.... .... ...|++++.+... ..
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~----------------------~~~~~~~~~~~~~--~~---- 58 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRL-VAEL----------------------EAEGSRHIKLPFI--SK---- 58 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch-HHHH----------------------HhcCCeEEEcccc--cc----
Confidence 45999999999999999999999999875221 1100 0113333322100 00
Q ss_pred CCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHHHHhhccCCCCCCC
Q 007873 179 KTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKS 258 (586)
Q Consensus 179 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~ 258 (586)
. ..........+...++. ++|| +||+|.........+.... .+
T Consensus 59 ----~-------------~~~~~~~~~~l~~~~~~------------~~~d-ii~~~~~~~~~~~~~~~~~-------~~ 101 (355)
T cd03819 59 ----N-------------PLRILLNVARLRRLIRE------------EKVD-IVHARSRAPAWSAYLAARR-------TR 101 (355)
T ss_pred ----c-------------hhhhHHHHHHHHHHHHH------------cCCC-EEEECCCchhHHHHHHHHh-------cC
Confidence 0 00011111222233332 2699 9999987665555444433 48
Q ss_pred ceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCC
Q 007873 259 AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKG 338 (586)
Q Consensus 259 ~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g 338 (586)
+|+++++|+..... .+.+..+..+|.++++|+..++.+.. .++
T Consensus 102 ~~~i~~~h~~~~~~-----------------------------------~~~~~~~~~~~~vi~~s~~~~~~~~~--~~~ 144 (355)
T cd03819 102 PPFVTTVHGFYSVN-----------------------------------FRYNAIMARGDRVIAVSNFIADHIRE--NYG 144 (355)
T ss_pred CCEEEEeCCchhhH-----------------------------------HHHHHHHHhcCEEEEeCHHHHHHHHH--hcC
Confidence 99999999653200 13445577899999999999999884 366
Q ss_pred CcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHH
Q 007873 339 VELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSD 418 (586)
Q Consensus 339 ~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d 418 (586)
++.+ ++.+||||+|...|.+.... ......++++++++. +.++|+|+||+.++||++
T Consensus 145 ~~~~------k~~~i~ngi~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~~i~~~Gr~~~~Kg~~ 201 (355)
T cd03819 145 VDPD------RIRVIPRGVDLDRFDPGAVP---------------PERILALAREWPLPK--GKPVILLPGRLTRWKGQE 201 (355)
T ss_pred CChh------hEEEecCCccccccCccccc---------------hHHHHHHHHHcCCCC--CceEEEEeeccccccCHH
Confidence 6544 89999999999888664321 111223677777654 458999999999999999
Q ss_pred HHHHHHhhccc--CCeEEEEEeCCCh--hhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccEEEEcC-CCCCCcH
Q 007873 419 ILAAAIPHFIK--ENVQIIVLGTGKK--PMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIPS-RFEPCGL 491 (586)
Q Consensus 419 ~Ll~A~~~l~~--~~v~lvIvG~g~~--~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi~l~PS-~~E~~gl 491 (586)
.+++++..+.+ ++++|+|+|.++. .+.+.+.+...+++ +++.+.+. .+++..+++.||++++|| .+|++|+
T Consensus 202 ~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~ 279 (355)
T cd03819 202 VFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGR 279 (355)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCch
Confidence 99999999977 6899999999863 34445555555443 35666655 456778999999999999 7899999
Q ss_pred HHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---Hh
Q 007873 492 IQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM---AQ 568 (586)
Q Consensus 492 ~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~---~~ 568 (586)
+++|||+||+|||+++.||..|++.++.+|+++ +++|+++++++|..++... ++.+.+++++++ .+
T Consensus 280 ~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 280 TAVEAQAMGRPVIASDHGGARETVRPGETGLLV----------PPGDAEALAQALDQILSLL-PEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEe----------CCCCHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 9999999999997666532 677788888874 68
Q ss_pred cCCHHHH
Q 007873 569 DLSWKVS 575 (586)
Q Consensus 569 ~fsw~~~ 575 (586)
+|||+.+
T Consensus 349 ~f~~~~~ 355 (355)
T cd03819 349 LFSYDRM 355 (355)
T ss_pred hhhhccC
Confidence 9999864
No 34
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=6.1e-34 Score=304.57 Aligned_cols=375 Identities=15% Similarity=0.145 Sum_probs=232.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
||||+|...+ ..||+|.++.+|++.|.++||+|.++..+......... .+++..
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~----------------------~~~~~~ 54 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVS----------------------HQNYPQ 54 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccc----------------------cCCcce
Confidence 8999999753 47999999999999999999999999987432211000 001111
Q ss_pred EEEcCcc-------ccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCC
Q 007873 165 VFVDHPW-------FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW 237 (586)
Q Consensus 165 ~~v~~~~-------~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~ 237 (586)
.....+. ...|..++ ..+....++.+.+.. .++|| |||.|..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~i~~--------~~~pD-viHlH~~ 103 (405)
T PRK10125 55 VIKHTPRMTAMANIALFRLFNR----------------------DLFGNFNELYRTITR--------TPGPV-VLHFHVL 103 (405)
T ss_pred EEEecccHHHHHHHHHHHhcch----------------------hhcchHHHHHHHHhh--------ccCCC-EEEEecc
Confidence 1111111 11110000 011111111111110 24699 9999998
Q ss_pred ccchHHHH--HHh--hccCCCCCCCceEEEEEcCCcc-ccccCcccccccCCChhhcccc-cc--ccCCCCCc-------
Q 007873 238 HTSLIPCY--LKT--MYKPKGMYKSAKVVFCIHNIAY-QGRFAFEDFGLLNLPAQFKSSF-DF--IDGYNKPV------- 302 (586)
Q Consensus 238 ~~~~~~~~--l~~--~~~~~~~~~~~pvv~~iH~~~~-~~~~~~~~~~~~~l~~~~~~~~-~~--~~~~~~~~------- 302 (586)
+...+... .+. ..+.+ ..++|+|+|+|+.+. .|.+.... . ...|...+ .+ ..++.+..
T Consensus 104 ~~~~~~~~~l~~~~~~~~~~--~~~~piV~TlHd~~~~tg~c~~~~-~----C~~~~~~c~~Cp~l~~~~~~~~d~~~~~ 176 (405)
T PRK10125 104 HSYWLNLKSVVRFCEKVKNH--KPDVTLVWTLHDHWSVTGRCAFTD-G----CEGWKTGCQKCPTLNNYPPVKVDRAHQL 176 (405)
T ss_pred cCceecHHHHHHHHhhhhcc--cCCCCEEEecccccccCCCcCCCc-c----cccccccCCCCCCccCCCCCccchHHHH
Confidence 87543321 111 00000 157899999999764 23333211 0 11121111 11 11111100
Q ss_pred CCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccc
Q 007873 303 RGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382 (586)
Q Consensus 303 ~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~ 382 (586)
+.++..+.+.....++.++++|+++++.+.+. ++ ..++.+||||+|++.+.+....
T Consensus 177 ~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~--~~--------~~~i~vI~NGid~~~~~~~~~~-------------- 232 (405)
T PRK10125 177 VAGKRQLFREMLALGCQFISPSQHVADAFNSL--YG--------PGRCRIINNGIDMATEAILAEL-------------- 232 (405)
T ss_pred HHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHH--cC--------CCCEEEeCCCcCcccccccccc--------------
Confidence 11122223334445789999999999988752 33 2389999999997543322100
Q ss_pred cHHHHHHHHHHhCCCCCCCCcEEEEEecC--ccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceE
Q 007873 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRL--EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKAR 460 (586)
Q Consensus 383 ~~~~~~~l~~~~gl~~~~~~~~i~~iGrl--~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~ 460 (586)
...+ ..++.++|+++|+. .+.||++.|++|+.++. ++++|+|+|+|+... ..++.
T Consensus 233 -----~~~~------~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~~~-----------~~~v~ 289 (405)
T PRK10125 233 -----PPVR------ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSPFT-----------AGNVV 289 (405)
T ss_pred -----cccc------cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCccc-----------ccceE
Confidence 0000 11245789999994 47899999999999984 689999999986311 12355
Q ss_pred EEecc-ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCH
Q 007873 461 GVAKF-NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDV 539 (586)
Q Consensus 461 ~~~~~-~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~ 539 (586)
..+.. +..++..+|+.||++|+||++|+||++++||||||+|||+|++||++|++.++ +|+++ +++|+
T Consensus 290 ~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv----------~~~d~ 358 (405)
T PRK10125 290 NHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTV----------SEEEV 358 (405)
T ss_pred EecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEE----------CCCCH
Confidence 55443 45677889999999999999999999999999999999999999999999875 99998 99999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH---HHhcCCHHHHHHHHHHHhc
Q 007873 540 AAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 540 ~~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fsw~~~a~~~~~~~~ 584 (586)
++||+.+...+.+ ..+.++..++ ..+.|||+.++++|++.+.
T Consensus 359 ~~La~~~~~~~~~---~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 359 LQLAQLSKPEIAQ---AVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred HHHHhccCHHHHH---HhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999865433222 1111111222 3678999999999998754
No 35
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.5e-33 Score=292.67 Aligned_cols=359 Identities=24% Similarity=0.275 Sum_probs=254.3
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++|+..|+|. .||.+.++..|+++|+++||+|.++++.......... +.+.+.
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~~~~ 55 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA-----------------------RVVPVP 55 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC-----------------------Cceeec
Confidence 799999998885 6999999999999999999999999986432111000 000000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccc-hHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS-LIPC 244 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~-~~~~ 244 (586)
....+.+.. ... ... ......+.++. ++|| +||+|..... ....
T Consensus 56 ~~~~~~~~~-------~~~-----------~~~----~~~~~~~~~~~------------~~pd-ii~~~~~~~~~~~~~ 100 (364)
T cd03814 56 SVPLPGYPE-------IRL-----------ALP----PRRRVRRLLDA------------FAPD-VVHIATPGPLGLAAL 100 (364)
T ss_pred ccccCcccc-------eEe-----------ccc----chhhHHHHHHh------------cCCC-EEEEeccchhhHHHH
Confidence 000000000 000 000 00111112222 2699 7777754322 2222
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
.+.+. .++|+++++|+...+-. ... .. .+.........+..++.+|.++++|
T Consensus 101 ~~~~~-------~~~~~i~~~~~~~~~~~------~~~-~~--------------~~~~~~~~~~~~~~~~~~d~i~~~s 152 (364)
T cd03814 101 RAARR-------LGIPVVTSYHTDFPEYL------RYY-GL--------------GPLSWLAWAYLRWFHNRADRVLVPS 152 (364)
T ss_pred HHHHH-------cCCCEEEEEecChHHHh------hhc-cc--------------chHhHhhHHHHHHHHHhCCEEEeCC
Confidence 22222 48999999997543110 000 00 0000011244566788999999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+...+.+.. .+.+ ++.+++||+|...|.|... +...+++++ + .+.++
T Consensus 153 ~~~~~~~~~---~~~~--------~~~~~~~g~~~~~~~~~~~-------------------~~~~~~~~~-~--~~~~~ 199 (364)
T cd03814 153 PSLADELRA---RGFR--------RVRLWPRGVDTELFHPRRR-------------------DEALRARLG-P--PDRPV 199 (364)
T ss_pred HHHHHHHhc---cCCC--------ceeecCCCccccccCcccc-------------------cHHHHHHhC-C--CCCeE
Confidence 999986654 2222 7899999999988876542 122334444 2 34579
Q ss_pred EEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEc
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~P 483 (586)
|+|+|++.+.||++.+++++.++.+ ++++|+|+|.|+. ...++ ....++.+.+..+.+++..+++.||++++|
T Consensus 200 i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~--~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~ 273 (364)
T cd03814 200 LLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA--RARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFP 273 (364)
T ss_pred EEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch--HHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 9999999999999999999999976 5899999999873 33333 334568888877888899999999999999
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007873 484 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK 563 (586)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~ 563 (586)
|..|+||++++|||+||+|||+++.++..|++.++.+|+++ ++.|.++++++|.+++++ ++.+.+|++
T Consensus 274 s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~----------~~~~~~~l~~~i~~l~~~--~~~~~~~~~ 341 (364)
T cd03814 274 SRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLV----------EPGDAEAFAAALAALLAD--PELRRRMAA 341 (364)
T ss_pred cccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEc----------CCCCHHHHHHHHHHHHcC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999998 999999999999999998 888889998
Q ss_pred HHHH--hcCCHHHHHHHHHHHh
Q 007873 564 NGMA--QDLSWKVSIGTVQEED 583 (586)
Q Consensus 564 ~~~~--~~fsw~~~a~~~~~~~ 583 (586)
++.. ++|+|+.+++++++.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 342 RARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred HHHHHHhhcCHHHHHHHHHHhh
Confidence 8853 6899999999998764
No 36
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=3.5e-33 Score=292.66 Aligned_cols=382 Identities=19% Similarity=0.206 Sum_probs=262.0
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++|+..++|. .||.+.++..++++|+++||+|.++++............ ......+|++++
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 63 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG---------------YKREEVDGVRVH 63 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc---------------ceEEecCCeEEE
Confidence 799999998885 499999999999999999999999997632211110000 111223456655
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCC-ccchHH-
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW-HTSLIP- 243 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~-~~~~~~- 243 (586)
.+........ . +......+..+.......... .. .+|| +|++|.+ .....+
T Consensus 64 ~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~-~~---------~~~D-~v~~~~~~~~~~~~~ 116 (394)
T cd03794 64 RVPLPPYKKN-------G---------LLKRLLNYLSFALSALLALLK-RR---------RRPD-VIIATSPPLLIALAA 116 (394)
T ss_pred EEecCCCCcc-------c---------hHHHHHhhhHHHHHHHHHHHh-cc---------cCCC-EEEEcCChHHHHHHH
Confidence 5432211110 0 101111222222222222221 11 2699 7888763 222233
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
..+++. .++|+++++|+..+......... .. ..........+.+..+..+|.++++
T Consensus 117 ~~~~~~-------~~~~~i~~~h~~~~~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~d~vi~~ 172 (394)
T cd03794 117 LLLARL-------KGAPFVLEVRDLWPESAVALGLL-----KN------------GSLLYRLLRKLERLIYRRADAIVVI 172 (394)
T ss_pred HHHHHh-------cCCCEEEEehhhcchhHHHccCc-----cc------------cchHHHHHHHHHHHHHhcCCEEEEE
Confidence 233332 48999999998654221100000 00 0000011223446678899999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
|+..++.+.. .+.+ ..++.++|||+|...+.+.... .. +..... ..+.+
T Consensus 173 s~~~~~~~~~---~~~~------~~~~~~i~~~~~~~~~~~~~~~-------------------~~-~~~~~~--~~~~~ 221 (394)
T cd03794 173 SPGMREYLVR---RGVP------PEKISVIPNGVDLELFKPPPAD-------------------ES-LRKELG--LDDKF 221 (394)
T ss_pred CHHHHHHHHh---cCCC------cCceEEcCCCCCHHHcCCccch-------------------hh-hhhccC--CCCcE
Confidence 9999999873 3433 2389999999998877665421 01 222222 23568
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHC-CCceEEEeccChHHHHHHHHhccEEE
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILY-PEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~-~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
+|+|+|++.++||++.+++|+.++.+ ++++|+|+|+|. ..+.++++.... ..++...+..+.+++..+++.||+++
T Consensus 222 ~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i 299 (394)
T cd03794 222 VVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGP--EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGL 299 (394)
T ss_pred EEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcc--cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeE
Confidence 99999999999999999999999976 489999999987 344455543322 24688888778888999999999999
Q ss_pred EcCCCCCC-----cHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHH
Q 007873 482 IPSRFEPC-----GLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ 556 (586)
Q Consensus 482 ~PS~~E~~-----gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~ 556 (586)
+|+..|++ |++++|||++|+|||+++.++..+.+.++.+|+++ +++|+++++++|.+++++ ++
T Consensus 300 ~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~----------~~~~~~~l~~~i~~~~~~--~~ 367 (394)
T cd03794 300 VPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVV----------PPGDPEALAAAILELLDD--PE 367 (394)
T ss_pred EeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEe----------CCCCHHHHHHHHHHHHhC--hH
Confidence 99998875 88899999999999999999999999999999998 899999999999999988 88
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHH
Q 007873 557 ALAEMMKNGM---AQDLSWKVSIGTVQ 580 (586)
Q Consensus 557 ~~~~~~~~~~---~~~fsw~~~a~~~~ 580 (586)
.++++++++. .++|||+.++++|+
T Consensus 368 ~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 368 ERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred HHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 8888888874 46999999999874
No 37
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=3.5e-33 Score=293.17 Aligned_cols=349 Identities=18% Similarity=0.210 Sum_probs=249.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||++++.. +. .||.++++..++++|.++||+|.+++....
T Consensus 1 MkIl~~~~~--~~--~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------------------------------- 41 (365)
T cd03825 1 MKVLHLNTS--DI--SGGAARAAYRLHRALQAAGVDSTMLVQEKK----------------------------------- 41 (365)
T ss_pred CeEEEEecC--CC--CCcHHHHHHHHHHHHHhcCCceeEEEeecc-----------------------------------
Confidence 899999864 32 699999999999999999999999986521
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
.+.. .++ ..+|| |||+|.+....+..
T Consensus 42 ------~~~~-----------------------------------~~~------------~~~~d-iih~~~~~~~~~~~ 67 (365)
T cd03825 42 ------ALIS-----------------------------------KIE------------IINAD-IVHLHWIHGGFLSI 67 (365)
T ss_pred ------hhhh-----------------------------------Chh------------cccCC-EEEEEccccCccCH
Confidence 0000 001 12599 99999866655443
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccc---cccccCCCC-CcCCcchhhhhHHh-hcCCE
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSS---FDFIDGYNK-PVRGRKINWMKAGI-LESDM 319 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~-~~ad~ 319 (586)
....... .++|+|+++|+..+...-... . .....+... ..+...+.. ......+.+....+ ..++.
T Consensus 68 ~~~~~~~-----~~~~~v~~~hd~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (365)
T cd03825 68 EDLSKLL-----DRKPVVWTLHDMWPFTGGCHY--P--GGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLT 138 (365)
T ss_pred HHHHHHH-----cCCCEEEEcccCcccccccCC--c--cccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcE
Confidence 3332220 388999999986532110000 0 000000000 000000000 00001112222222 45778
Q ss_pred EEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCC
Q 007873 320 VLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (586)
Q Consensus 320 vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (586)
++++|+..++.+.+. +.++ ..++.++|||+|...|.|.. +...++.++++.+
T Consensus 139 ~v~~s~~~~~~~~~~--~~~~------~~~~~vi~ngi~~~~~~~~~--------------------~~~~~~~~~~~~~ 190 (365)
T cd03825 139 IVAPSRWLADCARSS--SLFK------GIPIEVIPNGIDTTIFRPRD--------------------KREARKRLGLPAD 190 (365)
T ss_pred EEehhHHHHHHHHhc--cccC------CCceEEeCCCCcccccCCCc--------------------HHHHHHHhCCCCC
Confidence 999999998888752 2232 34899999999998887653 4456777787643
Q ss_pred CCCcEEEEEecCcc--ccCHHHHHHHHhhccc---CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccC-hHHHHHH
Q 007873 400 RNIPVIGFIGRLEE--QKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN-IPLAHMI 473 (586)
Q Consensus 400 ~~~~~i~~iGrl~~--~KG~d~Ll~A~~~l~~---~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~-~~~~~~~ 473 (586)
.+++++.|+... .||++.+++|+..+.+ ++++++++|.++..... ....++.+.+..+ .+++..+
T Consensus 191 --~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g~~~~~~~~~~~ 261 (365)
T cd03825 191 --KKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-------DLPFPVHYLGSLNDDESLALI 261 (365)
T ss_pred --CeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-------cCCCceEecCCcCCHHHHHHH
Confidence 367777777765 8999999999999975 78999999998742211 2344677777777 7778899
Q ss_pred HHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 474 l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
++.||++++||..|++|++++|||+||+|||+++.||+.|++.++.+|+++ ++.|+++++++|.+++++
T Consensus 262 ~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~----------~~~~~~~~~~~l~~l~~~- 330 (365)
T cd03825 262 YSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLA----------KPGDPEDLAEGIEWLLAD- 330 (365)
T ss_pred HHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEe----------CCCCHHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999999999999997 889999999999999998
Q ss_pred CHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 554 GTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 554 ~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
++.+.++++++. .++|||+.++++|++.+.
T Consensus 331 -~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 331 -PDEREELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred -HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777888888774 578999999999998764
No 38
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=6.5e-33 Score=290.60 Aligned_cols=353 Identities=18% Similarity=0.230 Sum_probs=251.4
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||+++.+.+ ..||.+.++.+|+++|.++||+|++++........... .+....
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-----------------------~~~~~~ 53 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPI-----------------------DATIIL 53 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchh-----------------------hccceE
Confidence 588887653 36999999999999999999999999875321111000 000000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.+... . ....+......+.++++. ++|| |||+|..++.++..+
T Consensus 54 ~~~~~---~---------------------~~~~~~~~~~~~~~~~~~------------~~pd-iv~~~~~~~~~~~~l 96 (360)
T cd04951 54 NLNMS---K---------------------NPLSFLLALWKLRKILRQ------------FKPD-VVHAHMFHANIFARL 96 (360)
T ss_pred Eeccc---c---------------------cchhhHHHHHHHHHHHHh------------cCCC-EEEEcccchHHHHHH
Confidence 11100 0 000011111223333333 3699 999998877766666
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
++... .+.|++++.|+....+.. .....+.....++.++++|+
T Consensus 97 ~~~~~------~~~~~v~~~h~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~s~ 139 (360)
T cd04951 97 LRLFL------PSPPLICTAHSKNEGGRL-------------------------------RMLAYRLTDFLSDLTTNVSK 139 (360)
T ss_pred HHhhC------CCCcEEEEeeccCchhHH-------------------------------HHHHHHHHhhccCceEEEcH
Confidence 65542 578999999975431100 01112333446888999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
...+.+... .+++. .++.+||||+|...|.+... .+..++++++++. +.+++
T Consensus 140 ~~~~~~~~~--~~~~~------~~~~~i~ng~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~~ 191 (360)
T cd04951 140 EALDYFIAS--KAFNA------NKSFVVYNGIDTDRFRKDPA------------------RRLKIRNALGVKN--DTFVI 191 (360)
T ss_pred HHHHHHHhc--cCCCc------ccEEEEccccchhhcCcchH------------------HHHHHHHHcCcCC--CCEEE
Confidence 999988852 22333 38999999999887765432 2455777888764 45899
Q ss_pred EEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccEEE
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
+|+||+.+.||++.+++|+.++.+ ++++|+|+|+|+ ..+.+++...+++ .++.+.+. .+++..+|+.||+++
T Consensus 192 l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~v 267 (360)
T cd04951 192 LAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--LRATLERLIKALGLSNRVKLLGL--RDDIAAYYNAADLFV 267 (360)
T ss_pred EEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--cHHHHHHHHHhcCCCCcEEEecc--cccHHHHHHhhceEE
Confidence 999999999999999999999865 589999999998 4455666555543 35666654 345678999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 007873 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 561 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 561 (586)
+||..|++|++++|||++|+|||+++.|++.|++.+ +|+.+ +++|+++++++|.+++++. +.....+
T Consensus 268 ~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~----------~~~~~~~~~~~i~~ll~~~-~~~~~~~ 334 (360)
T cd04951 268 LSSAWEGFGLVVAEAMACELPVVATDAGGVREVVGD--SGLIV----------PISDPEALANKIDEILKMS-GEERDII 334 (360)
T ss_pred ecccccCCChHHHHHHHcCCCEEEecCCChhhEecC--CceEe----------CCCCHHHHHHHHHHHHhCC-HHHHHHH
Confidence 999999999999999999999999999999999987 78887 8999999999999999652 3444444
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHhc
Q 007873 562 MKN--GMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 562 ~~~--~~~~~fsw~~~a~~~~~~~~ 584 (586)
..+ ...+.|||+.++++|++.++
T Consensus 335 ~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 335 GARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 443 35789999999999998764
No 39
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=7.8e-34 Score=299.99 Aligned_cols=341 Identities=15% Similarity=0.194 Sum_probs=232.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhC--CCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCc
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~--Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (586)
|||++++..+++ .||+++++.+++++|.++ ||+|.++++....... +. ....+. .. +
T Consensus 1 mkI~~~~~~~~~---~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~-~~-------------~~~~~~-~~---~ 59 (359)
T PRK09922 1 MKIAFIGEAVSG---FGGMETVISNVINTFEESKINCEMFFFCRNDKMDKA-WL-------------KEIKYA-QS---F 59 (359)
T ss_pred CeeEEecccccC---CCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChH-HH-------------Hhcchh-cc---c
Confidence 899999876433 599999999999999999 8999999976321111 00 000000 00 0
Q ss_pred eEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchH
Q 007873 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (586)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~ 242 (586)
+...+. ++. .. .....+.+.++. .+|| +||+|+.....+
T Consensus 60 ~~~~~~---~~~---------------------~~----~~~~~l~~~l~~------------~~~D-ii~~~~~~~~~~ 98 (359)
T PRK09922 60 SNIKLS---FLR---------------------RA----KHVYNFSKWLKE------------TQPD-IVICIDVISCLY 98 (359)
T ss_pred ccchhh---hhc---------------------cc----HHHHHHHHHHHh------------cCCC-EEEEcCHHHHHH
Confidence 000000 000 00 011122233333 2699 999997655444
Q ss_pred HHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEE
Q 007873 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (586)
Q Consensus 243 ~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vit 322 (586)
...+++... ...+++.+.|...... . .. ....+..+|.+++
T Consensus 99 ~~~~~~~~~-----~~~~~~~~~h~~~~~~---------------~------------------~~-~~~~~~~~d~~i~ 139 (359)
T PRK09922 99 ANKARKKSG-----KQFKIFSWPHFSLDHK---------------K------------------HA-ECKKITCADYHLA 139 (359)
T ss_pred HHHHHHHhC-----CCCeEEEEecCccccc---------------c------------------hh-hhhhhhcCCEEEE
Confidence 444444321 2345666667421100 0 00 0111368999999
Q ss_pred eCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcC-CCCccccccccCccccccccHHHHHHHHHHhCCCCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWN-PLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (586)
+|+..++.+.. +|++.+ ++.+||||+|.+.+. |.. ...+
T Consensus 140 ~S~~~~~~~~~---~~~~~~------ki~vi~N~id~~~~~~~~~-------------------------------~~~~ 179 (359)
T PRK09922 140 ISSGIKEQMMA---RGISAQ------RISVIYNPVEIKTIIIPPP-------------------------------ERDK 179 (359)
T ss_pred cCHHHHHHHHH---cCCCHH------HEEEEcCCCCHHHccCCCc-------------------------------ccCC
Confidence 99999999885 566644 899999999965543 221 1123
Q ss_pred CcEEEEEecCc--cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccCh--HHHHHHHH
Q 007873 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNI--PLAHMIIA 475 (586)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~--~~~~~~l~ 475 (586)
.++|+|+||+. ++||++.+++|+.++. ++++|+|+|+|+ ..+.++++..+++ +++.+.+..+. +.+..+|+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~-~~~~l~ivG~g~--~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~ 256 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTT-GEWQLHIIGDGS--DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK 256 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhC-CCeEEEEEeCCc--cHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh
Confidence 57899999996 5699999999999885 489999999998 4566777776654 46777766543 67778999
Q ss_pred hccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcC
Q 007873 476 GADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 554 (586)
Q Consensus 476 ~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~ 554 (586)
.||++++||.+|+||++++||||||+|||+++ .||..|++.++.+|+++ +++|+++++++|.+++++..
T Consensus 257 ~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv----------~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 257 NVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELY----------TPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred cCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEE----------CCCCHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999 89999999999999998 99999999999999999832
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007873 555 TQALAEMMKNGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 555 ~~~~~~~~~~~~~~~fsw~~~a~~~~~ 581 (586)
......+..+ .++|+-+...+++.+
T Consensus 327 ~~~~~~~~~~--~~~~~~~~~~~~~~~ 351 (359)
T PRK09922 327 KYQHDAIPNS--IERFYEVLYFKNLNN 351 (359)
T ss_pred cCCHHHHHHH--HHHhhHHHHHHHHHH
Confidence 1122333332 355666666666554
No 40
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=3.5e-33 Score=290.37 Aligned_cols=355 Identities=19% Similarity=0.206 Sum_probs=257.5
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCc-cccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY-KDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
||+++...+.+ ||.+.++..|+++|.+.||+|.+++...... .+.. ...|+++
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~i~v 54 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEEL----------------------EEAGVPV 54 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHH----------------------HhcCCeE
Confidence 68999987644 9999999999999999999999998753211 1100 0124555
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
+.+..+.... .. .....+.+.++.. +|| +||+|.+.......
T Consensus 55 ~~~~~~~~~~---------------------~~----~~~~~~~~~~~~~------------~~d-iv~~~~~~~~~~~~ 96 (365)
T cd03807 55 YCLGKRPGRP---------------------DP----GALLRLYKLIRRL------------RPD-VVHTWMYHADLYGG 96 (365)
T ss_pred EEEecccccc---------------------cH----HHHHHHHHHHHhh------------CCC-EEEeccccccHHHH
Confidence 5443221100 00 1112223333322 599 88998877666655
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
...... .+.|++++.|+...... .+. ........+.....+|.++++|
T Consensus 97 ~~~~~~------~~~~~i~~~~~~~~~~~-------------~~~-------------~~~~~~~~~~~~~~~~~~i~~s 144 (365)
T cd03807 97 LAARLA------GVPPVIWGIRHSDLDLG-------------KKS-------------TRLVARLRRLLSSFIPLIVANS 144 (365)
T ss_pred HHHHhc------CCCcEEEEecCCccccc-------------chh-------------HhHHHHHHHHhccccCeEEecc
Confidence 555432 47899999997654211 000 0011122344556789999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+...+.+.+ ++++.+ ++.+++||+|...+.+.... +..++++++++. +.++
T Consensus 145 ~~~~~~~~~---~~~~~~------~~~vi~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~--~~~~ 195 (365)
T cd03807 145 AAAAEYHQA---IGYPPK------KIVVIPNGVDTERFSPDLDA------------------RARLREELGLPE--DTFL 195 (365)
T ss_pred HHHHHHHHH---cCCChh------heeEeCCCcCHHhcCCcccc------------------hHHHHHhcCCCC--CCeE
Confidence 999999886 355543 89999999998887665421 445567788764 4589
Q ss_pred EEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHH-HC--CCceEEEeccChHHHHHHHHhccE
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEI-LY--PEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~-~~--~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
|+|+|++.+.||++.+++|+..+.+ ++++|+|+|.+.. ...+++... .. ..++.+.+. .+++..+++.||+
T Consensus 196 i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi 271 (365)
T cd03807 196 IGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPD--RANLELLALKELGLEDKVILLGE--RSDVPALLNALDV 271 (365)
T ss_pred EEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcc--hhHHHHHHHHhcCCCceEEEccc--cccHHHHHHhCCE
Confidence 9999999999999999999999866 6899999999873 223333333 32 234554442 3456789999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
+++||..|++|++++|||+||+|||+++.||..|++.+ +|+++ +++|+++++++|.+++++ ++.+.
T Consensus 272 ~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~----------~~~~~~~l~~~i~~l~~~--~~~~~ 337 (365)
T cd03807 272 FVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLV----------PPGDPEALAEAIEALLAD--PALRQ 337 (365)
T ss_pred EEeCCccccCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEe----------CCCCHHHHHHHHHHHHhC--hHHHH
Confidence 99999999999999999999999999999999999988 89987 899999999999999998 77888
Q ss_pred HHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 560 EMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 560 ~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
++++++. .++|||+.++++|.+.+
T Consensus 338 ~~~~~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 338 ALGEAARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 8888874 57899999999999865
No 41
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=7.5e-33 Score=289.78 Aligned_cols=349 Identities=21% Similarity=0.264 Sum_probs=247.6
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++|+.+|+|. .||.+.++.+|+++|.++||+|++++.......... ...+.+++
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----------------------~~~~~~~~ 56 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE----------------------ERNGHRVI 56 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh----------------------hccCceEE
Confidence 799999999886 899999999999999999999999997632211100 01122222
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.++. +... .... +.. ......+ +. ..+|| +||+|..........
T Consensus 57 ~~~~--~~~~-----~~~~--------~~~----------~~~~~~~-~~---------~~~~D-ii~~~~~~~~~~~~~ 100 (357)
T cd03795 57 RAPS--LLNV-----ASTP--------FSP----------SFFKQLK-KL---------AKKAD-VIHLHFPNPLADLAL 100 (357)
T ss_pred Eeec--cccc-----cccc--------ccH----------HHHHHHH-hc---------CCCCC-EEEEecCcchHHHHH
Confidence 2211 1000 0000 000 0000111 11 12699 888886433222111
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
.... .+.|+++++|+....... .......+.+..++.+|.++++|+
T Consensus 101 ~~~~-------~~~~~i~~~h~~~~~~~~---------------------------~~~~~~~~~~~~~~~~d~vi~~s~ 146 (357)
T cd03795 101 LLLP-------RKKPVVVHWHSDIVKQKL---------------------------LLKLYRPLQRRFLRRADAIVATSP 146 (357)
T ss_pred HHhc-------cCceEEEEEcChhhccch---------------------------hhhhhhHHHHHHHHhcCEEEeCcH
Confidence 1111 378999999963321100 000112344667899999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
.+.+.+... .+.+ .++.+||||+|...+.+.... .. .....+ .+.+.|
T Consensus 147 ~~~~~~~~~--~~~~-------~~~~~i~~gi~~~~~~~~~~~------------------~~---~~~~~~--~~~~~i 194 (357)
T cd03795 147 NYAETSPVL--RRFR-------DKVRVIPLGLDPARYPRPDAL------------------EE---AIWRRA--AGRPFF 194 (357)
T ss_pred HHHHHHHHh--cCCc-------cceEEecCCCChhhcCCcchh------------------hh---HhhcCC--CCCcEE
Confidence 999877642 1111 279999999999888664311 00 112222 345899
Q ss_pred EEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccEEEEc
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIP 483 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi~l~P 483 (586)
+|+||+.+.||++.+++|+.++. +++|+|+|+|+ ....++++..+.+ .++.+.+..+.+++..+++.||++++|
T Consensus 195 ~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~--~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~p 270 (357)
T cd03795 195 LFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGP--LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFP 270 (357)
T ss_pred EEecccccccCHHHHHHHHHhcc--CcEEEEEeCCh--hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeC
Confidence 99999999999999999999996 89999999997 4556666664433 478888888888889999999999999
Q ss_pred CC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc-CcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 007873 484 SR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE 560 (586)
Q Consensus 484 S~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~-g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~ 560 (586)
|. .|++|++++|||++|+|||+++.++..+.+.+ +.+|+++ +++|+++++++|.+++++ ++.+++
T Consensus 271 s~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~----------~~~d~~~~~~~i~~l~~~--~~~~~~ 338 (357)
T cd03795 271 SVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVV----------PPGDPAALAEAIRRLLED--PELRER 338 (357)
T ss_pred CcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEe----------CCCCHHHHHHHHHHHHHC--HHHHHH
Confidence 96 49999999999999999999999999999986 8999998 999999999999999998 888889
Q ss_pred HHHHHH---HhcCCHHHHH
Q 007873 561 MMKNGM---AQDLSWKVSI 576 (586)
Q Consensus 561 ~~~~~~---~~~fsw~~~a 576 (586)
|++++. .++|||+.++
T Consensus 339 ~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 339 LGEAARERAEEEFTADRMV 357 (357)
T ss_pred HHHHHHHHHHHhcchHhhC
Confidence 998884 5899999874
No 42
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=3e-33 Score=291.91 Aligned_cols=366 Identities=21% Similarity=0.241 Sum_probs=251.3
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++|+..++|. .||.+.++.+|+++|+++||+|+++++............ .....
T Consensus 1 kIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~----------------------~~~~~ 56 (375)
T cd03821 1 KILHVIPSFDPK--YGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALN----------------------GVPVK 56 (375)
T ss_pred CeEEEcCCCCcc--cCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhcc----------------------Cceee
Confidence 799999988764 899999999999999999999999998643222110000 00000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecC-CccchHH-
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND-WHTSLIP- 243 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~-~~~~~~~- 243 (586)
.......... ....+ .+............ .++| +||+|+ |......
T Consensus 57 ~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~----------~~~d-ii~~~~~~~~~~~~~ 104 (375)
T cd03821 57 LFSINVAYGL--------------------NLARY-LFPPSLLAWLRLNI----------READ-IVHVHGLWSYPSLAA 104 (375)
T ss_pred ecccchhhhh--------------------hhhhh-ccChhHHHHHHHhC----------CCCC-EEEEecccchHHHHH
Confidence 0000000000 00000 00001111111111 2599 888887 3332222
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
..+.+. .++|++++.|+.......... .+.. . .......+..+..++.+++.
T Consensus 105 ~~~~~~-------~~~~~i~~~~~~~~~~~~~~~---------~~~~----------~--~~~~~~~~~~~~~~~~i~~~ 156 (375)
T cd03821 105 ARAARK-------YGIPYVVSPHGMLDPWALPHK---------ALKK----------R--LAWFLFERRLLQAAAAVHAT 156 (375)
T ss_pred HHHHHH-------hCCCEEEEccccccccccccc---------hhhh----------H--HHHHHHHHHHHhcCCEEEEC
Confidence 222222 488999999975431110000 0000 0 00112235567789999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
|+.....+... .. ..++.+||||+|...|.+... ...++..+.+ ++.+
T Consensus 157 s~~~~~~~~~~----~~------~~~~~vi~~~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~~ 204 (375)
T cd03821 157 SEQEAAEIRRL----GL------KAPIAVIPNGVDIPPFAALPS--------------------RGRRRKFPIL--PDKR 204 (375)
T ss_pred CHHHHHHHHhh----CC------cccEEEcCCCcChhccCcchh--------------------hhhhhhccCC--CCCc
Confidence 98777776631 11 238999999999988876531 1114445544 3558
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccE
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
+|+|+||+.+.||++.+++|+..+.+ ++++|+|+|.+...+...++.+..+++ .++.+.+..+.+++..+++.||+
T Consensus 205 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv 284 (375)
T cd03821 205 IILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADL 284 (375)
T ss_pred EEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCE
Confidence 99999999999999999999999977 799999999987656666666544433 46888877788888899999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
+++||..|+||++++|||+||+|||+++.+|+.|++.+ .+|+++ ++++++++++|.+++++ ++.++
T Consensus 285 ~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~i~~l~~~--~~~~~ 350 (375)
T cd03821 285 FVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVV-----------DDDVDALAAALRRALEL--PQRLK 350 (375)
T ss_pred EEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEe-----------CCChHHHHHHHHHHHhC--HHHHH
Confidence 99999999999999999999999999999999999998 889874 55679999999999998 77888
Q ss_pred HHHHHHH---HhcCCHHHHHHHHHH
Q 007873 560 EMMKNGM---AQDLSWKVSIGTVQE 581 (586)
Q Consensus 560 ~~~~~~~---~~~fsw~~~a~~~~~ 581 (586)
++++++. .++|||+.++++|++
T Consensus 351 ~~~~~~~~~~~~~~s~~~~~~~~~~ 375 (375)
T cd03821 351 AMGENGRALVEERFSWTAIAQQLLE 375 (375)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhhC
Confidence 8888773 689999999999864
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=7.3e-33 Score=288.33 Aligned_cols=356 Identities=18% Similarity=0.196 Sum_probs=247.2
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||+|++..++|. ..||.+.++.+|+++|+++||+|.++++............ +....
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~----------------------~~~~~ 57 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVI----------------------GVVVY 57 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccc----------------------cceee
Confidence 799999998774 5799999999999999999999999998643222110000 00000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.......... ......+ .........+...+.+.++.. +|| +||+|.+........
T Consensus 58 ~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------------~~d-ii~~~~~~~~~~~~~ 113 (359)
T cd03823 58 GRPIDEVLRS---ALPRDLF--------HLSDYDNPAVVAEFARLLEDF------------RPD-VVHFHHLQGLGVSIL 113 (359)
T ss_pred ccccccccCC---Cchhhhh--------HHHhccCHHHHHHHHHHHHHc------------CCC-EEEECCccchHHHHH
Confidence 0000000000 0000000 000000011222333333332 599 889987643322222
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
..... .++|+++++|+....... ..+ .....|.++++|+
T Consensus 114 ~~~~~------~~~~~i~~~hd~~~~~~~--------------------------------~~~---~~~~~d~ii~~s~ 152 (359)
T cd03823 114 RAARD------RGIPIVLTLHDYWLICPR--------------------------------QGL---FKKGGDAVIAPSR 152 (359)
T ss_pred HHHHh------cCCCEEEEEeeeeeecch--------------------------------hhh---hccCCCEEEEeCH
Confidence 11111 478999999975431100 000 0112399999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
..++.+.+ ++.. ..++.+|+||+|...+.+... +. ..+.++|
T Consensus 153 ~~~~~~~~---~~~~------~~~~~vi~n~~~~~~~~~~~~---------------------------~~--~~~~~~i 194 (359)
T cd03823 153 FLLDRYVA---NGLF------AEKISVIRNGIDLDRAKRPRR---------------------------AP--PGGRLRF 194 (359)
T ss_pred HHHHHHHH---cCCC------ccceEEecCCcChhhcccccc---------------------------CC--CCCceEE
Confidence 99999886 3332 238999999999988765431 11 1345789
Q ss_pred EEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCC
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~ 485 (586)
+|+|++.+.||++.+++++..+.+++++|+++|.+.......... ....++...+..+.+++..+++.||++++||.
T Consensus 195 ~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~ 271 (359)
T cd03823 195 GFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSI 271 (359)
T ss_pred EEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCc
Confidence 999999999999999999999976799999999987433222211 34456888888888899999999999999998
Q ss_pred -CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007873 486 -FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 564 (586)
Q Consensus 486 -~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~ 564 (586)
.|++|++++|||+||+|||+++.+|..|++.++.+|+++ +++|+++++++|.+++++ ++.+++++++
T Consensus 272 ~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~----------~~~d~~~l~~~i~~l~~~--~~~~~~~~~~ 339 (359)
T cd03823 272 WPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLF----------PPGDAEDLAAALERLIDD--PDLLERLRAG 339 (359)
T ss_pred ccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEE----------CCCCHHHHHHHHHHHHhC--hHHHHHHHHh
Confidence 699999999999999999999999999999999999998 999999999999999998 8888999988
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 007873 565 GMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 565 ~~~~~fsw~~~a~~~~~~~ 583 (586)
+.+ .++.+.++++|++.+
T Consensus 340 ~~~-~~~~~~~~~~~~~~~ 357 (359)
T cd03823 340 IEP-PRSIEDQAEEYLKLY 357 (359)
T ss_pred HHH-hhhHHHHHHHHHHHh
Confidence 764 344599999988765
No 44
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=3.8e-33 Score=292.61 Aligned_cols=349 Identities=15% Similarity=0.120 Sum_probs=243.9
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCC--ccccCCcceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ--YKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
||++++..+ + .||.+.++.+++++|++.||+|+++++.... +... ....|+.
T Consensus 1 kIl~~~~~~-~---~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~----------------------~~~~~~~ 54 (358)
T cd03812 1 KILHIVGTM-N---RGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDE----------------------IEKLGGK 54 (358)
T ss_pred CEEEEeCCC-C---CccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHH----------------------HHHcCCe
Confidence 789999875 3 7999999999999999999999999986322 0000 0012343
Q ss_pred EEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH
Q 007873 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (586)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~ 243 (586)
++.+..+ .. +... +...+.+.++. ++|| +||+|......++
T Consensus 55 ~~~~~~~--~~---------------------~~~~---~~~~~~~~~~~------------~~~D-vv~~~~~~~~~~~ 95 (358)
T cd03812 55 IYYIPAR--KK---------------------NPLK---YFKKLYKLIKK------------NKYD-IVHVHGSSASGFI 95 (358)
T ss_pred EEEecCC--Cc---------------------cHHH---HHHHHHHHHhc------------CCCC-EEEEeCcchhHHH
Confidence 3332111 00 0111 11222222222 2699 9999987655555
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
..+.... ....++++.|+......+... ......+.+..+..+|.++++
T Consensus 96 ~~~~~~~------~~~~~v~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~i~~ 144 (358)
T cd03812 96 LLAAKKA------GVKVRIAHSHNTSDSHDKKKK-------------------------ILKYKVLRKLINRLATDYLAC 144 (358)
T ss_pred HHHHhhC------CCCeEEEEeccccccccccch-------------------------hhHHHHHHHHHHhcCCEEEEc
Confidence 5544432 233456778865432211000 000012234567789999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
|+..++.+... .+ ..++.+||||+|...+.+.... ++. +++.+.. .+.+
T Consensus 145 s~~~~~~~~~~----~~------~~~~~vi~ngvd~~~~~~~~~~------------------~~~-~~~~~~~--~~~~ 193 (358)
T cd03812 145 SEEAGKWLFGK----VK------NKKFKVIPNGIDLEKFIFNEEI------------------RKK-RRELGIL--EDKF 193 (358)
T ss_pred CHHHHHHHHhC----CC------cccEEEEeccCcHHHcCCCchh------------------hhH-HHHcCCC--CCCE
Confidence 99999888751 22 3489999999999887664321 111 4445544 3558
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccE
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
+|+|+||+.++||++.+++|+..+.+ ++++|+|+|+|+ ..+.+++...+++ +++.+.+. .+++..+++.||+
T Consensus 194 ~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi 269 (358)
T cd03812 194 VIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE--LEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDV 269 (358)
T ss_pred EEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCE
Confidence 99999999999999999999999976 699999999998 4555666655543 45766665 4556789999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
+++||+.|++|++++|||++|+|||+|+.||..|++.+ ..|++. .++++++++++|.+++++ ++..+
T Consensus 270 ~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~-~~~~~~----------~~~~~~~~a~~i~~l~~~--~~~~~ 336 (358)
T cd03812 270 FLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTD-LVKFLS----------LDESPEIWAEEILKLKSE--DRRER 336 (358)
T ss_pred EEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc-CccEEe----------CCCCHHHHHHHHHHHHhC--cchhh
Confidence 99999999999999999999999999999999999999 456654 777899999999999999 77778
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 007873 560 EMMKNGMAQDLSWKVSIGT 578 (586)
Q Consensus 560 ~~~~~~~~~~fsw~~~a~~ 578 (586)
.+..++..+..+++.....
T Consensus 337 ~~~~~~~~~~~~~~~~~~~ 355 (358)
T cd03812 337 SSESIKKKGLDADDEANTL 355 (358)
T ss_pred hhhhhhhccchhhhhhhHh
Confidence 8888877666666655544
No 45
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=9.6e-33 Score=288.77 Aligned_cols=341 Identities=21% Similarity=0.215 Sum_probs=250.4
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||+|++..|+| |.+.++.+++++|.++||+|.+++........... ... ..+..+
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~-----------------~~~--~~~~~~- 55 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHP-----------------EDR--AELART- 55 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCcccccccc-----------------ccc--ccccch-
Confidence 79999998744 36789999999999999999999986432111000 000 000000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
. +. .+..........+.+.+.. .++| +||+|..........
T Consensus 56 -----~---------------------~~---~~~~~~~~~~~~~~~~~~~---------~~~D-ii~~~~~~~~~~~~~ 96 (355)
T cd03799 56 -----R---------------------YL---ARSLALLAQALVLARELRR---------LGID-HIHAHFGTTPATVAM 96 (355)
T ss_pred -----H---------------------HH---HHHHHHHHHHHHHHHHHHh---------cCCC-EEEECCCCchHHHHH
Confidence 0 00 0111111112222222211 2599 999998655444444
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
+.... .++|+++++|+...... ....+++..++.+|.++++|+
T Consensus 97 ~~~~~------~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~vi~~s~ 139 (355)
T cd03799 97 LASRL------GGIPYSFTAHGKDIFRS-------------------------------PDAIDLDEKLARADFVVAISE 139 (355)
T ss_pred HHHHh------cCCCEEEEEeccccccc-------------------------------CchHHHHHHHhhCCEEEECCH
Confidence 44332 37899999996432100 001355777889999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
..++.+.+. ++.+. .++.+||||+|...+.+.... ...+.+.|
T Consensus 140 ~~~~~l~~~--~~~~~------~~~~vi~~~~d~~~~~~~~~~-----------------------------~~~~~~~i 182 (355)
T cd03799 140 YNRQQLIRL--LGCDP------DKIHVVHCGVDLERFPPRPPP-----------------------------PPGEPLRI 182 (355)
T ss_pred HHHHHHHHh--cCCCc------ccEEEEeCCcCHHHcCCcccc-----------------------------ccCCCeEE
Confidence 999999862 24443 389999999998877654200 11245789
Q ss_pred EEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHC--CCceEEEeccChHHHHHHHHhccEEE
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
+|+|++.+.||++.+++++.++.+ ++++|+|+|.|+ ..+.+++...++ +.++.+.+..+.+++..+++.||+++
T Consensus 183 ~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l 260 (355)
T cd03799 183 LSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGP--LRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFV 260 (355)
T ss_pred EEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCc--cHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEE
Confidence 999999999999999999999876 589999999987 345556655554 35788888888888999999999999
Q ss_pred EcCCC------CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCH
Q 007873 482 IPSRF------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 555 (586)
Q Consensus 482 ~PS~~------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~ 555 (586)
+||.. |++|++++|||++|+|+|+++.|+..|++.++.+|+++ ++.|+++++++|.+++++ +
T Consensus 261 ~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~----------~~~~~~~l~~~i~~~~~~--~ 328 (355)
T cd03799 261 LPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLV----------PPGDPEALADAIERLLDD--P 328 (355)
T ss_pred ecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEe----------CCCCHHHHHHHHHHHHhC--H
Confidence 99999 99999999999999999999999999999999999998 889999999999999998 7
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHH
Q 007873 556 QALAEMMKNGM---AQDLSWKVSIGT 578 (586)
Q Consensus 556 ~~~~~~~~~~~---~~~fsw~~~a~~ 578 (586)
+.+.++++++. .++|||+..+++
T Consensus 329 ~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 329 ELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 77888998884 588999999875
No 46
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=5.2e-32 Score=280.48 Aligned_cols=366 Identities=26% Similarity=0.365 Sum_probs=264.1
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++++..++|. .||.+.++..|+++|.+.||+|.++++.......... . ......
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~----------------~------~~~~~~ 56 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE----------------V------GGIVVV 56 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee----------------e------cCccee
Confidence 799999988775 7999999999999999999999999987432221100 0 000000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.. ... . ..+ ...............++. .++| +||+|.+........
T Consensus 57 ~~--~~~-~--------~~~----------~~~~~~~~~~~~~~~~~~------------~~~D-ii~~~~~~~~~~~~~ 102 (374)
T cd03801 57 RP--PPL-L--------RVR----------RLLLLLLLALRLRRLLRR------------ERFD-VVHAHDWLALLAAAL 102 (374)
T ss_pred cC--Ccc-c--------ccc----------hhHHHHHHHHHHHHHhhh------------cCCc-EEEEechhHHHHHHH
Confidence 00 000 0 000 000111111222222222 2599 899988776665543
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
.... .++|+++++|+..+...... .. ........+.+..++.+|.++++|+
T Consensus 103 ~~~~-------~~~~~i~~~h~~~~~~~~~~---------~~-------------~~~~~~~~~~~~~~~~~d~~i~~s~ 153 (374)
T cd03801 103 AARL-------LGIPLVLTVHGLEFGRPGNE---------LG-------------LLLKLARALERRALRRADRIIAVSE 153 (374)
T ss_pred HHHh-------cCCcEEEEeccchhhccccc---------hh-------------HHHHHHHHHHHHHHHhCCEEEEecH
Confidence 3332 58999999998765221110 00 0001123445667889999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
..++.+.+. ++.+. .++.++|||+|...+.+.. ...+.....+ .+.++|
T Consensus 154 ~~~~~~~~~--~~~~~------~~~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~--~~~~~i 202 (374)
T cd03801 154 ATREELREL--GGVPP------EKITVIPNGVDTERFRPAP---------------------RAARRRLGIP--EDEPVI 202 (374)
T ss_pred HHHHHHHhc--CCCCC------CcEEEecCcccccccCccc---------------------hHHHhhcCCc--CCCeEE
Confidence 999999862 33322 3899999999988776531 1112222222 345899
Q ss_pred EEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHH--CCCceEEEeccChHHHHHHHHhccEEE
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEIL--YPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~--~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
+|+|++.+.||++.+++++..+.+ ++++|+|+|.+. ....++++..+ .+.++...+..+.+++..+++.||+++
T Consensus 203 ~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i 280 (374)
T cd03801 203 LFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP--LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFV 280 (374)
T ss_pred EEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEE
Confidence 999999999999999999999876 589999999776 45555555433 335788888888888999999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 007873 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 561 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 561 (586)
+|+..|++|++++|||++|+|||+++.+++.|++.++.+|+++ ++.|+++++++|.+++++ ++.+.++
T Consensus 281 ~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~----------~~~~~~~l~~~i~~~~~~--~~~~~~~ 348 (374)
T cd03801 281 LPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLV----------PPGDPEALAEAILRLLDD--PELRRRL 348 (374)
T ss_pred ecchhccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEe----------CCCCHHHHHHHHHHHHcC--hHHHHHH
Confidence 9999999999999999999999999999999999999999998 999999999999999998 7888888
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHh
Q 007873 562 MKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 562 ~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
++++. .+.|||+.+++++.+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 349 GEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 88875 68999999999998764
No 47
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.6e-33 Score=304.66 Aligned_cols=285 Identities=18% Similarity=0.218 Sum_probs=219.3
Q ss_pred CCCEEEEecCCc-cchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCc
Q 007873 227 GEDVVFVANDWH-TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (586)
Q Consensus 227 ~pDvii~~h~~~-~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (586)
++| |+|+|... .+++++.++.. .++|+|++.|++....+.. ++.... | .....+..+.+
T Consensus 173 ~~d-viH~~s~~~~g~~~~~~~~~-------~~~p~I~t~Hg~~~~e~~~--~~~~~~----~------~~~~~~~~~~~ 232 (475)
T cd03813 173 KAD-VYHAVSTGYAGLLGALAKAR-------RGTPFLLTEHGIYTRERKI--ELLQAD----W------EMSYFRRLWIR 232 (475)
T ss_pred CCC-EEeccCcchHHHHHHHHHHH-------hCCCEEEecCCccHHHHHH--HHHhcc----c------chHHHHHHHHH
Confidence 589 99999743 34445555544 4899999999865422110 000000 0 00000011111
Q ss_pred c-hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccH
Q 007873 306 K-INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (586)
Q Consensus 306 ~-~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (586)
. ..+.+..++.||.|+++|+..++.+.. +|++.+ ++.+||||+|.+.|.+....
T Consensus 233 ~~~~l~~~~~~~ad~Ii~~s~~~~~~~~~---~g~~~~------ki~vIpNgid~~~f~~~~~~---------------- 287 (475)
T cd03813 233 FFESLGRLAYQAADRITTLYEGNRERQIE---DGADPE------KIRVIPNGIDPERFAPARRA---------------- 287 (475)
T ss_pred HHHHHHHHHHHhCCEEEecCHHHHHHHHH---cCCCHH------HeEEeCCCcCHHHcCCcccc----------------
Confidence 1 223466788999999999999887764 676655 89999999999988765310
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCC--hhhHHHHHHHHHHCC--Cc
Q 007873 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK--KPMEKQLEQLEILYP--EK 458 (586)
Q Consensus 385 ~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~--~~~~~~l~~l~~~~~--~~ 458 (586)
. ..++.++|+|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+ ..+.++++++..+++ ++
T Consensus 288 ----------~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~ 355 (475)
T cd03813 288 ----------R--PEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDN 355 (475)
T ss_pred ----------c--cCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCe
Confidence 0 12355899999999999999999999999876 799999999984 456778888887765 46
Q ss_pred eEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc------CcceEEEcccccccc
Q 007873 459 ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------GFTGFQMGSFSVDCE 532 (586)
Q Consensus 459 v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~------g~~G~~~~~~~~~~~ 532 (586)
+.+.+ .+++..+++.||++++||..|++|++++|||+||+|||+|+.||+.|++.+ |.+|+++
T Consensus 356 V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv-------- 424 (475)
T cd03813 356 VKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVV-------- 424 (475)
T ss_pred EEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEE--------
Confidence 77666 445678999999999999999999999999999999999999999999998 6799998
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 533 AVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 533 ~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
++.|+++++++|.+++++ ++.+++|++++. .+.|+|+.++++|.+.+
T Consensus 425 --~~~d~~~la~ai~~ll~~--~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY 474 (475)
T cd03813 425 --PPADPEALARAILRLLKD--PELRRAMGEAGRKRVERYYTLERMIDSYRRLY 474 (475)
T ss_pred --CCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999998 888899998884 58899999999999865
No 48
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=6e-33 Score=290.30 Aligned_cols=360 Identities=19% Similarity=0.188 Sum_probs=255.0
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++++..+.|. ..||+++++.+|+++|+++||+|+++++............ . ....
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--------------~-------~~~~- 57 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLR--------------A-------ALRL- 57 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccch--------------h-------cccc-
Confidence 689999888772 4899999999999999999999999998743222210000 0 0000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
...... ......+............. .++| ++|+|.+.....
T Consensus 58 -~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~------------~~~D-ii~~~~~~~~~~--- 99 (365)
T cd03809 58 -LLRLPR---------------------RLLWGLLFLLRAGDRLLLLL------------LGLD-LLHSPHNTAPLL--- 99 (365)
T ss_pred -cccccc---------------------ccccchhhHHHHHHHHHhhh------------cCCC-eeeecccccCcc---
Confidence 000000 00001111111111122221 1599 899987665544
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
+ ..++|+++++|+..+.... ..... ........+++..++.+|.++++|+
T Consensus 100 --~-------~~~~~~i~~~hd~~~~~~~-----------~~~~~----------~~~~~~~~~~~~~~~~~d~~i~~s~ 149 (365)
T cd03809 100 --R-------LRGVPVVVTIHDLIPLRFP-----------EYFSP----------GFRRYFRRLLRRALRRADAIITVSE 149 (365)
T ss_pred --c-------CCCCCEEEEeccchhhhCc-----------ccCCH----------HHHHHHHHHHHHHHHHcCEEEEccH
Confidence 1 1589999999986541110 00000 0001123455777889999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
..++.+.+. ++.+. .++.++|||+|...+.+..++ . +...... .+.++|
T Consensus 150 ~~~~~~~~~--~~~~~------~~~~vi~~~~~~~~~~~~~~~--------------------~-~~~~~~~--~~~~~i 198 (365)
T cd03809 150 ATKRDLLRY--LGVPP------DKIVVIPLGVDPRFRPPPAEA--------------------E-VLRALYL--LPRPYF 198 (365)
T ss_pred HHHHHHHHH--hCcCH------HHEEeeccccCccccCCCchH--------------------H-HHHHhcC--CCCCeE
Confidence 999999862 44333 389999999998887665321 1 2222222 345899
Q ss_pred EEEecCccccCHHHHHHHHhhcccC--CeEEEEEeCCChhhHHHHHHHH-HHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLGTGKKPMEKQLEQLE-ILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~~--~v~lvIvG~g~~~~~~~l~~l~-~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
+|+|++.+.||++.+++++..+.+. +++|+++|.+........+.+. .....++...+..+.+++..+++.||++++
T Consensus 199 ~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ 278 (365)
T cd03809 199 LYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVF 278 (365)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcc
Confidence 9999999999999999999999773 6999999987643443333321 223457888888888899999999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 007873 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 562 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 562 (586)
||.+|++|++++|||++|+|||+++.|++.|++.+ +|+++ ++.|+++++++|.+++++ ++.+.+++
T Consensus 279 ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~~----------~~~~~~~~~~~i~~l~~~--~~~~~~~~ 344 (365)
T cd03809 279 PSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGD--AALYF----------DPLDPEALAAAIERLLED--PALREELR 344 (365)
T ss_pred cchhccCCCCHHHHhcCCCcEEecCCCCccceecC--ceeee----------CCCCHHHHHHHHHHHhcC--HHHHHHHH
Confidence 99999999999999999999999999999999964 67776 899999999999999988 88888888
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 007873 563 KNG--MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 563 ~~~--~~~~fsw~~~a~~~~~ 581 (586)
+++ ..++|||+.++++|.+
T Consensus 345 ~~~~~~~~~~sw~~~~~~~~~ 365 (365)
T cd03809 345 ERGLARAKRFSWEKTARRTLD 365 (365)
T ss_pred HHHHHHHHhCCHHHHHHHHhC
Confidence 887 4688999999999864
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=3.4e-32 Score=304.29 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=202.2
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEE-EEcCCccccccCcccccccCCChhhccccccccCCCCCcCCc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF-CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~-~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (586)
+|| |||+|.....++..+..+. .++|+|+ +.|+... . .. +..+ ..
T Consensus 400 kpD-IVH~h~~~a~~lg~lAa~~-------~gvPvIv~t~h~~~~-~-~~---------~~~~---------------~~ 445 (694)
T PRK15179 400 VPS-VVHIWQDGSIFACALAALL-------AGVPRIVLSVRTMPP-V-DR---------PDRY---------------RV 445 (694)
T ss_pred CCc-EEEEeCCcHHHHHHHHHHH-------cCCCEEEEEeCCCcc-c-cc---------hhHH---------------HH
Confidence 599 9999988777666665554 3778876 5564321 0 00 0000 00
Q ss_pred chhhhhHHhh--cCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCcccccccc
Q 007873 306 KINWMKAGIL--ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 383 (586)
Q Consensus 306 ~~~~~~~~~~--~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~ 383 (586)
........+. .++.++++|+..++.+.. .+|++.+ ++.+||||+|+..|.|....
T Consensus 446 ~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~--~~g~~~~------kI~VI~NGVd~~~f~~~~~~--------------- 502 (694)
T PRK15179 446 EYDIIYSELLKMRGVALSSNSQFAAHRYAD--WLGVDER------RIPVVYNGLAPLKSVQDDAC--------------- 502 (694)
T ss_pred HHHHHHHHHHhcCCeEEEeCcHHHHHHHHH--HcCCChh------HEEEECCCcCHHhcCCCchh---------------
Confidence 0111111222 345677778888777764 2566644 89999999998888653210
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--Cce
Q 007873 384 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKA 459 (586)
Q Consensus 384 ~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v 459 (586)
+. .+..+.....++.++|+++||+.++||++.|++|+.++.+ ++++|+|+|+|+ ..+.++++..+++ +++
T Consensus 503 ---~~-~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~--~~~~L~~l~~~lgL~~~V 576 (694)
T PRK15179 503 ---TA-MMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP--LLESVREFAQRLGMGERI 576 (694)
T ss_pred ---hH-HHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc--chHHHHHHHHHcCCCCcE
Confidence 11 1111111112345799999999999999999999998865 789999999998 5677888877765 456
Q ss_pred EEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCC-
Q 007873 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVD- 538 (586)
Q Consensus 460 ~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d- 538 (586)
.+.+.. +.+..+|+.||++++||.+|+||++++|||+||+|||+|+.||+.|+|.++.+|+++ +++|
T Consensus 577 ~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv----------~~~d~ 644 (694)
T PRK15179 577 LFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTL----------PADTV 644 (694)
T ss_pred EEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEe----------CCCCC
Confidence 665543 356789999999999999999999999999999999999999999999999999998 7776
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHH---HHhcCCHHHHHHHHHHHhc
Q 007873 539 -VAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 539 -~~~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fsw~~~a~~~~~~~~ 584 (586)
+++++++|.+++.+ .....++++++ ..++|||+.++++|++.+.
T Consensus 645 ~~~~La~aL~~ll~~--l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 645 TAPDVAEALARIHDM--CAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred ChHHHHHHHHHHHhC--hhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 46899999888876 33334455555 3579999999999998764
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=7.1e-32 Score=281.84 Aligned_cols=362 Identities=22% Similarity=0.302 Sum_probs=252.1
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++++..|+|. .||.+..+.+++++|+++||+|.++++........... .++...
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 56 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV----------------------VVVRPF 56 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc----------------------cccccc
Confidence 799999998886 89999999999999999999999999875432221000 000000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCc-cchHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPC 244 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~-~~~~~~ 244 (586)
..... +..+ . ...+ .+.......++. ++|| +||+|... ......
T Consensus 57 ~~~~~-~~~~--------~------------~~~~-~~~~~~~~~~~~------------~~~D-iv~~~~~~~~~~~~~ 101 (374)
T cd03817 57 RVPTF-KYPD--------F------------RLPL-PIPRALIIILKE------------LGPD-IVHTHTPFSLGLLGL 101 (374)
T ss_pred ccccc-hhhh--------h------------hccc-cHHHHHHHHHhh------------cCCC-EEEECCchhhhhHHH
Confidence 00000 0000 0 0000 011122222222 2599 88887643 233333
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcch-hhhhHHhhcCCEEEEe
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI-NWMKAGILESDMVLTV 323 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vitv 323 (586)
.+.+. .++|+++++|+.... +. ......... ...... .+.+..+..+|.++++
T Consensus 102 ~~~~~-------~~~~~i~~~~~~~~~--~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~i~~~ 155 (374)
T cd03817 102 RVARK-------LGIPVVATYHTMYED--YT----HYVPLGRLL-------------ARAVVRRKLSRRFYNRCDAVIAP 155 (374)
T ss_pred HHHHH-------cCCCEEEEecCCHHH--HH----HHHhcccch-------------hHHHHHHHHHHHHhhhCCEEEec
Confidence 33333 489999999975430 00 000000000 000111 4557778899999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
|+..++.+.. ++.+ .++.++|||+|...+.+... ...++.++++. +.+
T Consensus 156 s~~~~~~~~~---~~~~-------~~~~vi~~~~~~~~~~~~~~--------------------~~~~~~~~~~~--~~~ 203 (374)
T cd03817 156 SEKIADLLRE---YGVK-------RPIEVIPTGIDLDRFEPVDG--------------------DDERRKLGIPE--DEP 203 (374)
T ss_pred cHHHHHHHHh---cCCC-------CceEEcCCccchhccCccch--------------------hHHHHhcCCCC--CCe
Confidence 9999888875 3332 26899999999988876531 22245555543 458
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccE
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
+|+++|++.+.||++.+++++..+.+ ++++|+++|.|+ ..+.++++..+++ .++.+.+..+.+++..+++.||+
T Consensus 204 ~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~ 281 (374)
T cd03817 204 VLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--EREELEELARELGLADRVIFTGFVPREELPDYYKAADL 281 (374)
T ss_pred EEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCE
Confidence 99999999999999999999999876 789999999987 4556666655443 47888888888889999999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
+++||..|++|++++|||+||+|||+++.|+..|++.++.+|+++ ++.|. +++++|.+++++ ++.++
T Consensus 282 ~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~----------~~~~~-~~~~~i~~l~~~--~~~~~ 348 (374)
T cd03817 282 FVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLF----------PPGDE-ALAEALLRLLQD--PELRR 348 (374)
T ss_pred EEecccccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEe----------CCCCH-HHHHHHHHHHhC--hHHHH
Confidence 999999999999999999999999999999999999999999998 77777 999999999998 77788
Q ss_pred HHHHHHH--HhcCCHHHHHHHH
Q 007873 560 EMMKNGM--AQDLSWKVSIGTV 579 (586)
Q Consensus 560 ~~~~~~~--~~~fsw~~~a~~~ 579 (586)
+|++++. .+++++.....++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T cd03817 349 RLSKNAEESAEKFSFAKKVEKL 370 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8998885 3455544443333
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.6e-31 Score=287.74 Aligned_cols=373 Identities=14% Similarity=0.084 Sum_probs=245.2
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
..+|++++.. .+|....+..++++|+++||+|+|++.......+. ....+|+.
T Consensus 3 ~~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~---------------------~~~~~~v~ 55 (415)
T cd03816 3 RKRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE---------------------ILSNPNIT 55 (415)
T ss_pred ccEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH---------------------HhcCCCEE
Confidence 4577777763 46667788999999999999999999763211100 01123566
Q ss_pred EEEEcCcc-ccccccCCCCCcccCCCCCCCCcchhHHH-HHHHHHHHHHhHhh-cccCCCCCCCCCCCCEEEEecCCcc-
Q 007873 164 RVFVDHPW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRF-SLLCQAALEAPRIL-NLNSNKYFSGPYGEDVVFVANDWHT- 239 (586)
Q Consensus 164 ~~~v~~~~-~~~~~w~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~~pDvii~~h~~~~- 239 (586)
++.+..+. ... ......++ +......+.+++.+ .. .+|| +||+|....
T Consensus 56 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~D-vi~~~~~~~~ 107 (415)
T cd03816 56 IHPLPPPPQRLN------------------KLPFLLFAPLKVLWQFFSLLWLLYKL---------RPAD-YILIQNPPSI 107 (415)
T ss_pred EEECCCCccccc------------------cchHHHHHHHHHHHHHHHHHHHHHhc---------CCCC-EEEEeCCCCc
Confidence 66554321 000 00011111 11111222222211 11 1599 788876332
Q ss_pred --chHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhh-hhHHhhc
Q 007873 240 --SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINW-MKAGILE 316 (586)
Q Consensus 240 --~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (586)
+.++.++++. .++|+|+++|+..+. .. ..+.. ..+...+...| .+..++.
T Consensus 108 ~~~~~a~~~~~~-------~~~~~V~~~h~~~~~-~~------~~~~~-------------~~~~~~~~~~~~e~~~~~~ 160 (415)
T cd03816 108 PTLLIAWLYCLL-------RRTKLIIDWHNYGYT-IL------ALKLG-------------ENHPLVRLAKWYEKLFGRL 160 (415)
T ss_pred hHHHHHHHHHHH-------hCCeEEEEcCCchHH-HH------hcccC-------------CCCHHHHHHHHHHHHHhhc
Confidence 2233333443 478999999975421 00 00000 00000012233 3556778
Q ss_pred CCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH----
Q 007873 317 SDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA---- 392 (586)
Q Consensus 317 ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 392 (586)
+|.|+++|+.+++.+.+ +|++.+ ++.+||||. ...|.|.... .....+.+
T Consensus 161 ad~ii~vS~~~~~~l~~---~~~~~~------ki~vI~Ng~-~~~f~p~~~~----------------~~~~~~~~~~~~ 214 (415)
T cd03816 161 ADYNLCVTKAMKEDLQQ---FNNWKI------RATVLYDRP-PEQFRPLPLE----------------EKHELFLKLAKT 214 (415)
T ss_pred CCEeeecCHHHHHHHHh---hhccCC------CeeecCCCC-HHHceeCcHH----------------HHHHHHHhcccc
Confidence 99999999999999875 555544 999999994 5667665321 00111111
Q ss_pred ---------HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--------CCeEEEEEeCCChhhHHHHHHHHHHC
Q 007873 393 ---------EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--------ENVQIIVLGTGKKPMEKQLEQLEILY 455 (586)
Q Consensus 393 ---------~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--------~~v~lvIvG~g~~~~~~~l~~l~~~~ 455 (586)
..++.. ++.++++++||+.++||++.|++|+..+.+ ++++|+|+|+|+ .++.++++.+++
T Consensus 215 ~~~~~~~~~~~~~~~-~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~--~~~~l~~~~~~~ 291 (415)
T cd03816 215 FLTRELRIGAVQLSE-ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP--LKEKYLERIKEL 291 (415)
T ss_pred ccccccccccceecC-CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc--cHHHHHHHHHHc
Confidence 112222 234678899999999999999999999853 479999999998 567777777766
Q ss_pred C-CceEEEec-cChHHHHHHHHhccEEEEcCC---CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEcccccc
Q 007873 456 P-EKARGVAK-FNIPLAHMIIAGADFILIPSR---FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 530 (586)
Q Consensus 456 ~-~~v~~~~~-~~~~~~~~~l~~aDi~l~PS~---~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~ 530 (586)
+ .++.+... .+.++++.+|+.||++++|+. .|++|++++|||+||+|||+++.||..|+++++.+|+++
T Consensus 292 ~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv------ 365 (415)
T cd03816 292 KLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVF------ 365 (415)
T ss_pred CCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEE------
Confidence 5 25665544 477888999999999997543 478999999999999999999999999999999999986
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-hcCCHHHHHHHH
Q 007873 531 CEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMA-QDLSWKVSIGTV 579 (586)
Q Consensus 531 ~~~v~~~d~~~la~~I~~ll~~~-~~~~~~~~~~~~~~-~~fsw~~~a~~~ 579 (586)
+|+++++++|.+++++. .++.+++|++++.+ ..++|+...++.
T Consensus 366 ------~d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 410 (415)
T cd03816 366 ------GDSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESELRWDENWDRV 410 (415)
T ss_pred ------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhcCHHHHHHHH
Confidence 38999999999999872 25778999999863 578888766554
No 52
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=1.7e-31 Score=279.41 Aligned_cols=348 Identities=22% Similarity=0.259 Sum_probs=242.1
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||+||+.. +|. .||.++++.+|+++|+++||+|.+++..... .. +... . .. .+....
T Consensus 1 kI~~v~~~-~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~-~~~~--------~--~~--------~~~~~~ 57 (366)
T cd03822 1 RIALVSPY-PPR--KCGIATFTTDLVNALSARGPDVLVVSVAALY-PS-LLYG--------G--EQ--------EVVRVI 57 (366)
T ss_pred CeEEecCC-CCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeeccc-Cc-ccCC--------C--cc--------cceeee
Confidence 79999875 564 7999999999999999999999999876321 11 0000 0 00 000000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH--
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP-- 243 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~-- 243 (586)
. .+ +. .....+.+.++.. +|| +||+|.|.....+
T Consensus 58 -~----------------~~----------~~----~~~~~~~~~~~~~------------~~d-ii~~~~~~~~~~~~~ 93 (366)
T cd03822 58 -V----------------LD----------NP----LDYRRAARAIRLS------------GPD-VVVIQHEYGIFGGEA 93 (366)
T ss_pred -e----------------cC----------Cc----hhHHHHHHHHhhc------------CCC-EEEEeeccccccchh
Confidence 0 00 00 0111122223322 599 8888775543222
Q ss_pred -HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEE
Q 007873 244 -CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (586)
Q Consensus 244 -~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vit 322 (586)
..+....+ ..++|+|+++|+...... ......+++..++.+|.+++
T Consensus 94 ~~~~~~~~~----~~~~~~i~~~h~~~~~~~-----------------------------~~~~~~~~~~~~~~~d~ii~ 140 (366)
T cd03822 94 GLYLLLLLR----GLGIPVVVTLHTVLLHEP-----------------------------RPGDRALLRLLLRRADAVIV 140 (366)
T ss_pred hHHHHHHHh----hcCCCEEEEEecCCcccc-----------------------------chhhhHHHHHHHhcCCEEEE
Confidence 22222111 148999999998511000 00122445667889999999
Q ss_pred eCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (586)
+|....+++... .+ ..++.+||||+|...+.+... . ++...+ .+.
T Consensus 141 ~s~~~~~~~~~~--~~--------~~~~~~i~~~~~~~~~~~~~~---------------------~--~~~~~~--~~~ 185 (366)
T cd03822 141 MSSELLRALLLR--AY--------PEKIAVIPHGVPDPPAEPPES---------------------L--KALGGL--DGR 185 (366)
T ss_pred eeHHHHHHHHhh--cC--------CCcEEEeCCCCcCcccCCchh---------------------h--HhhcCC--CCC
Confidence 974444444321 11 238999999999776654321 0 222222 355
Q ss_pred cEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHH-------HHHHHHHCCCceEEEec-cChHHHHH
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQ-------LEQLEILYPEKARGVAK-FNIPLAHM 472 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~-------l~~l~~~~~~~v~~~~~-~~~~~~~~ 472 (586)
++|+|+|++.+.||++.+++|+.++.+ ++++|+|+|.+....... ++++ ....++.+.+. .+.+++..
T Consensus 186 ~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~--~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 186 PVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERL--GLADRVIFINRYLPDEELPE 263 (366)
T ss_pred eEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhc--CCCCcEEEecCcCCHHHHHH
Confidence 899999999999999999999999976 689999999986433222 2222 23357888877 57788889
Q ss_pred HHHhccEEEEcCCCC--CCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 473 IIAGADFILIPSRFE--PCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E--~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
+++.||++++||.+| ++|++++|||++|+|||+++.|+ .+.+.++.+|+++ +++|+++++++|.+++
T Consensus 264 ~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~----------~~~d~~~~~~~l~~l~ 332 (366)
T cd03822 264 LFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLV----------PPGDPAALAEAIRRLL 332 (366)
T ss_pred HHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCCcEEE----------cCCCHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999 7888888899998 9999999999999999
Q ss_pred HhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 551 ATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
++ ++.+.+|++++. .++|||+.++++|.+.+
T Consensus 333 ~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 333 AD--PELAQALRARAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred cC--hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 98 788888988884 35599999999998865
No 53
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=5.6e-32 Score=291.28 Aligned_cols=218 Identities=17% Similarity=0.132 Sum_probs=175.0
Q ss_pred hhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHH
Q 007873 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (586)
Q Consensus 309 ~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (586)
+++..++.+|.++++|++.++.+.+. ++. .+++.+|+||+|++.|.+....
T Consensus 182 ~~~~~~~~aD~ii~~S~~~~~~~~~~--~~~-------~~~~~vi~~gvd~~~~~~~~~~-------------------- 232 (419)
T cd03806 182 LYGLAGSFADVVMVNSTWTRNHIRSL--WKR-------NTKPSIVYPPCDVEELLKLPLD-------------------- 232 (419)
T ss_pred HHHHHhhcCCEEEECCHHHHHHHHHH--hCc-------CCCcEEEcCCCCHHHhcccccc--------------------
Confidence 45667889999999999999998852 221 1278999999998877554210
Q ss_pred HHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C-----CeEEEEEeCCCh----hhHHHHHHHHHHCC-
Q 007873 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E-----NVQIIVLGTGKK----PMEKQLEQLEILYP- 456 (586)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~-----~v~lvIvG~g~~----~~~~~l~~l~~~~~- 456 (586)
..++.++|+|+||+++.||++.+++|++++.+ + +++|+|+|++.. .+.+++++++.+++
T Consensus 233 ---------~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l 303 (419)
T cd03806 233 ---------EKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL 303 (419)
T ss_pred ---------cccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Confidence 11245799999999999999999999999875 2 599999998742 35677788777654
Q ss_pred -CceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCc-ccccc---cCcceEEEccccccc
Q 007873 457 -EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL-VDTVE---EGFTGFQMGSFSVDC 531 (586)
Q Consensus 457 -~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~-~e~v~---~g~~G~~~~~~~~~~ 531 (586)
+++.+.+..+.+++..+|+.||++++||..|+||++++|||+||+|||++++||. .|++. ++.+|+++
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~------- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA------- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe-------
Confidence 5788888888889999999999999999999999999999999999999999875 57887 89999986
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHhcCCHHHHHH
Q 007873 532 EAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKVSIG 577 (586)
Q Consensus 532 ~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~ 577 (586)
.|+++++++|.+++++. ++.++.+.+++ ..++|||+.+.+
T Consensus 377 -----~d~~~la~ai~~ll~~~-~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 377 -----STAEEYAEAIEKILSLS-EEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred -----CCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 49999999999999972 33344444443 358899998754
No 54
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=2e-31 Score=274.82 Aligned_cols=340 Identities=21% Similarity=0.204 Sum_probs=238.9
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++++..+.| .||.+.++.+|+++|+++||+|.+++..... .... ...+++.+.
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~---------------------~~~~~~~~~ 55 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFY---------------------ELDPKIKVI 55 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc---------------------ccCCcccee
Confidence 68999988765 6999999999999999999999999986432 0100 001123333
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.+...... + .+ ........+.+.++. .+|| +|++|.+. ...+
T Consensus 56 ~~~~~~~~-~--------~~-------------~~~~~~~~~~~~l~~------------~~~d-~i~~~~~~---~~~~ 97 (348)
T cd03820 56 DLGDKRDS-K--------LL-------------ARFKKLRRLRKLLKN------------NKPD-VVISFLTS---LLTF 97 (348)
T ss_pred eccccccc-c--------hh-------------ccccchHHHHHhhcc------------cCCC-EEEEcCch---HHHH
Confidence 22211000 0 00 000111122222222 2699 77777755 1222
Q ss_pred HHhhccCCCCCCC-ceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 246 LKTMYKPKGMYKS-AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 246 l~~~~~~~~~~~~-~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
+.... .+ +|++++.|+........ .......+..++.+|.++++|
T Consensus 98 ~~~~~------~~~~~~i~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~d~ii~~s 143 (348)
T cd03820 98 LASLG------LKIVKLIVSEHNSPDAYKKR----------------------------LRRLLLRRLLYRRADAVVVLT 143 (348)
T ss_pred HHHHh------hccccEEEecCCCccchhhh----------------------------hHHHHHHHHHHhcCCEEEEeC
Confidence 22211 23 49999999654311000 001113577789999999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+..+.... ... ..++.++|||++...+.+.. ..+.+.
T Consensus 144 ~~~~~~~~-----~~~------~~~~~vi~~~~~~~~~~~~~--------------------------------~~~~~~ 180 (348)
T cd03820 144 EEDRALYY-----KKF------NKNVVVIPNPLPFPPEEPSS--------------------------------DLKSKR 180 (348)
T ss_pred HHHHHHhh-----ccC------CCCeEEecCCcChhhccccC--------------------------------CCCCcE
Confidence 99872222 111 23899999999977654320 124579
Q ss_pred EEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccEE
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
++|+|++.+.||++.+++|++++.+ ++++|+|+|.+. ....++++..+++ .++.+.+. .+++..+++.||++
T Consensus 181 i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~ 256 (348)
T cd03820 181 ILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP--EREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIF 256 (348)
T ss_pred EEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC--CHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEE
Confidence 9999999999999999999999974 789999999987 4455555555554 24444443 56788899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCc-CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
++||.+|++|++++|||+||+|||+++.+ +..+++.++.+|+++ ++.|+++++++|.+++++ ++.++
T Consensus 257 i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~i~~ll~~--~~~~~ 324 (348)
T cd03820 257 VLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLV----------PNGDVEALAEALLRLMED--EELRK 324 (348)
T ss_pred EeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEe----------CCCCHHHHHHHHHHHHcC--HHHHH
Confidence 99999999999999999999999999965 567777877799998 999999999999999998 88888
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHH
Q 007873 560 EMMKNG--MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 560 ~~~~~~--~~~~fsw~~~a~~~~~ 581 (586)
+|++++ ..++|+|+.++++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd03820 325 RMGANARESAERFSIENIIKQWEE 348 (348)
T ss_pred HHHHHHHHHHHHhCHHHHHHHhcC
Confidence 999887 4689999999999863
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=3.3e-31 Score=274.46 Aligned_cols=353 Identities=20% Similarity=0.228 Sum_probs=249.0
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++++.. .||.+.++..++++|.++||+|.++++...... .....|+..+
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-----------------------~~~~~~~~~~ 51 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-----------------------ELEALGVKVI 51 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-----------------------ccccCCceEE
Confidence 68899875 488899999999999999999999997632211 0112344444
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.++...... +..........+.+.++. .+|| ++|+|.+...++...
T Consensus 52 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~------------~~~d-vv~~~~~~~~~~~~~ 97 (359)
T cd03808 52 PIPLDRRGI---------------------NPFKDLKALLRLYRLLRK------------ERPD-IVHTHTPKPGILGRL 97 (359)
T ss_pred ecccccccc---------------------ChHhHHHHHHHHHHHHHh------------cCCC-EEEEccccchhHHHH
Confidence 442211000 000011111222233332 2699 899987766666555
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
..+.. ...++++++|+..+...... + .........+..+..+|.++++|+
T Consensus 98 ~~~~~------~~~~~i~~~~~~~~~~~~~~-----------~-------------~~~~~~~~~~~~~~~~d~ii~~s~ 147 (359)
T cd03808 98 AARLA------GVPKVIYTVHGLGFVFTSGG-----------L-------------KRRLYLLLERLALRFTDKVIFQNE 147 (359)
T ss_pred HHHHc------CCCCEEEEecCcchhhccch-----------h-------------HHHHHHHHHHHHHhhccEEEEcCH
Confidence 55432 46788888887543211100 0 000112334666788999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
...+.+.+ .+... ....+.+++||+|...+.+.... ..++.+.|
T Consensus 148 ~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~i 191 (359)
T cd03808 148 DDRDLALK---LGIIK----KKKTVLIPGSGVDLDRFSPSPEP-----------------------------IPEDDPVF 191 (359)
T ss_pred HHHHHHHH---hcCCC----cCceEEecCCCCChhhcCccccc-----------------------------cCCCCcEE
Confidence 99999886 22211 12367888999998877654310 12355899
Q ss_pred EEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHH-HCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEI-LYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~-~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
+|+|++.+.||++.+++++..+.+ ++++|+|+|.+..........+.. ....++.+.+. .+++..+++.||++++
T Consensus 192 ~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ 269 (359)
T cd03808 192 LFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVL 269 (359)
T ss_pred EEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEe
Confidence 999999999999999999999974 789999999987432222111111 12235666655 4567789999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 007873 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 562 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 562 (586)
||..|++|++++|||+||+|||+++.++..|++.++.+|+++ +++|+++++++|.+++.+ ++.+.+++
T Consensus 270 ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~----------~~~~~~~~~~~i~~l~~~--~~~~~~~~ 337 (359)
T cd03808 270 PSYREGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLV----------PPGDAEALADAIERLIED--PELRARMG 337 (359)
T ss_pred cCcccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEE----------CCCCHHHHHHHHHHHHhC--HHHHHHHH
Confidence 999999999999999999999999999999999999999998 999999999999999998 88888888
Q ss_pred HHHH---HhcCCHHHHHHHHHH
Q 007873 563 KNGM---AQDLSWKVSIGTVQE 581 (586)
Q Consensus 563 ~~~~---~~~fsw~~~a~~~~~ 581 (586)
+++. .++|||+.++++|++
T Consensus 338 ~~~~~~~~~~~s~~~~~~~~~~ 359 (359)
T cd03808 338 QAARKRAEEEFDEEIVVKKLLE 359 (359)
T ss_pred HHHHHHHHHhcCHHHHHHHhhC
Confidence 8873 689999999999863
No 56
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.6e-30 Score=281.48 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=178.4
Q ss_pred hHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHH
Q 007873 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (586)
Q Consensus 311 ~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (586)
+.....+|.|+++|++.++.+.+. ++.+ .++.+++||+|...+.+...
T Consensus 215 ~~~~~~ad~ii~nS~~t~~~l~~~--~~~~-------~~i~vvyp~vd~~~~~~~~~----------------------- 262 (463)
T PLN02949 215 GLVGRCAHLAMVNSSWTKSHIEAL--WRIP-------ERIKRVYPPCDTSGLQALPL----------------------- 262 (463)
T ss_pred HHHcCCCCEEEECCHHHHHHHHHH--cCCC-------CCeEEEcCCCCHHHcccCCc-----------------------
Confidence 444578999999999999998752 2221 27889999998765532110
Q ss_pred HHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCC----hhhHHHHHHHHHHCC--Cc
Q 007873 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----KPMEKQLEQLEILYP--EK 458 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~----~~~~~~l~~l~~~~~--~~ 458 (586)
....+.+.++++||++++||++.+|+|+.++.+ ++++|+|+|++. ..+.+++++++.+++ ++
T Consensus 263 ------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~ 336 (463)
T PLN02949 263 ------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGD 336 (463)
T ss_pred ------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCc
Confidence 011234789999999999999999999998643 589999999874 234567777777654 57
Q ss_pred eEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcc-ccccc---CcceEEEccccccccCC
Q 007873 459 ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV-DTVEE---GFTGFQMGSFSVDCEAV 534 (586)
Q Consensus 459 v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~-e~v~~---g~~G~~~~~~~~~~~~v 534 (586)
+.+.+..+.+++..+|+.||++++||..|+||++++|||++|+|||+++.||.. |++.+ +.+|+++
T Consensus 337 V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~---------- 406 (463)
T PLN02949 337 VEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA---------- 406 (463)
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC----------
Confidence 888888888889999999999999999999999999999999999999999975 77765 6789974
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 535 DPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 535 ~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
.|+++++++|.+++++. ++.+++|++++. .++|||+.+++++++..
T Consensus 407 --~~~~~la~ai~~ll~~~-~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i 454 (463)
T PLN02949 407 --TTVEEYADAILEVLRMR-ETERLEIAAAARKRANRFSEQRFNEDFKDAI 454 (463)
T ss_pred --CCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 49999999999999852 566778888874 47799999999998754
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=2e-30 Score=269.65 Aligned_cols=367 Identities=23% Similarity=0.310 Sum_probs=255.7
Q ss_pred EEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEEE
Q 007873 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVF 166 (586)
Q Consensus 87 Il~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 166 (586)
|++++..++|. ..||.+.++..++++|.+.||+|+++++............... . .....
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~------------~-----~~~~~-- 60 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRL------------V-----GVERL-- 60 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhccccc------------c-----ccccc--
Confidence 57888887652 4699999999999999999999999998633222110000000 0 00000
Q ss_pred EcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCc-cchHHHH
Q 007873 167 VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPCY 245 (586)
Q Consensus 167 v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~-~~~~~~~ 245 (586)
........ ..........+.......++.. .+++| +|++|... ...+...
T Consensus 61 -~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~----------~~~~d-ii~~~~~~~~~~~~~~ 111 (377)
T cd03798 61 -PVLLPVVP-----------------LLKGPLLYLLAARALLKLLKLK----------RFRPD-LIHAHFAYPDGFAAAL 111 (377)
T ss_pred -ccCcchhh-----------------ccccchhHHHHHHHHHHHHhcc----------cCCCC-EEEEeccchHHHHHHH
Confidence 00000000 0001111222333333333311 13699 77777433 3334444
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
+... .++|+++++|+........ .......++..+..+|.++++|+
T Consensus 112 ~~~~-------~~~~~i~~~h~~~~~~~~~---------------------------~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 112 LKRK-------LGIPLVVTLHGSDVNLLPR---------------------------KRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHh-------cCCCEEEEeecchhcccCc---------------------------hhhHHHHHHHHHhcCCeEEeCCH
Confidence 4333 4789999999765421100 00123455777889999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
..++.+.+ .+.+ ..++.+++||+|...+.+.... . . .+.+.. .+.+.|
T Consensus 158 ~~~~~~~~---~~~~------~~~~~~i~~~~~~~~~~~~~~~------------------~-~--~~~~~~--~~~~~i 205 (377)
T cd03798 158 ALADELKA---LGID------PEKVTVIPNGVDTERFSPADRA------------------E-A--RKLGLP--EDKKVI 205 (377)
T ss_pred HHHHHHHH---hcCC------CCceEEcCCCcCcccCCCcchH------------------H-H--HhccCC--CCceEE
Confidence 99999886 2222 3489999999999888765421 0 0 222332 355899
Q ss_pred EEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHC--CCceEEEeccChHHHHHHHHhccEEE
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
+++|++.+.||++.+++++..+.+ ++++|+|+|.+. ..+.++++.... ..++...+..+.+++..+++.||+++
T Consensus 206 ~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i 283 (377)
T cd03798 206 LFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP--LREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFV 283 (377)
T ss_pred EEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc--chHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeee
Confidence 999999999999999999999976 589999999987 344455554433 34688888888888999999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 007873 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 561 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 561 (586)
+||..|++|++++|||++|+|||+++.|+..|++.++.+|+++ ++.|+++++++|.+++++ ++. ++
T Consensus 284 ~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~----------~~~~~~~l~~~i~~~~~~--~~~--~~ 349 (377)
T cd03798 284 LPSLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLV----------PPGDPEALAEAILRLLAD--PWL--RL 349 (377)
T ss_pred cchhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEE----------CCCCHHHHHHHHHHHhcC--cHH--HH
Confidence 9999999999999999999999999999999999999999998 999999999999999998 443 44
Q ss_pred HHHH---HHhcCCHHHHHHHHHHHhc
Q 007873 562 MKNG---MAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 562 ~~~~---~~~~fsw~~~a~~~~~~~~ 584 (586)
.+++ ..+.|||+..++++.+..+
T Consensus 350 ~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 350 GRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4443 4689999999999988654
No 58
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=5.7e-31 Score=282.25 Aligned_cols=274 Identities=12% Similarity=0.125 Sum_probs=202.4
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEE-EcCCccccccCcccccccCCChhhccccccccCCCCCcCCc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC-IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~-iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (586)
+|| |||+|...+.+.+...... .++|++++ .|.... .. ..+
T Consensus 280 rpD-IVHt~~~~a~l~g~laA~l-------agvpviv~~~h~~~~-~~-----------------------------~~r 321 (578)
T PRK15490 280 KLD-YLSVWQDGACLMIALAALI-------AGVPRIQLGLRGLPP-VV-----------------------------RKR 321 (578)
T ss_pred CCC-EEEEcCcccHHHHHHHHHh-------cCCCEEEEeecccCC-cc-----------------------------hhh
Confidence 699 9999987765665555544 47888654 564111 00 001
Q ss_pred chhhhhHH-------hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccc
Q 007873 306 KINWMKAG-------ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (586)
Q Consensus 306 ~~~~~~~~-------~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~ 378 (586)
...+.... +..+| ++++|...++.+.+ .++++.+ ++.+||||+|+..|.|..+.
T Consensus 322 ~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~--~lgip~~------KI~VIyNGVD~~rf~p~~~~---------- 382 (578)
T PRK15490 322 LFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYAD--WLKLEAK------HFQVVYNGVLPPSTEPSSEV---------- 382 (578)
T ss_pred HHHHHHHHhhhhceeEecch-hhhccHHHHHHHHH--HhCCCHH------HEEEEeCCcchhhcCccchh----------
Confidence 11111112 23345 66788888888875 2566655 99999999999988875321
Q ss_pred cccccHHHHHHHHHH--hCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHH
Q 007873 379 VMDAKPLLKEALQAE--VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEIL 454 (586)
Q Consensus 379 ~~~~~~~~~~~l~~~--~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~ 454 (586)
....+.. .+++ ++.++|+++||+.++||.+.+++++.++.+ ++++|+|+|+|+ ..+.++++..+
T Consensus 383 --------~~~~r~~~~~~l~--~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~--~~eeLk~la~e 450 (578)
T PRK15490 383 --------PHKIWQQFTQKTQ--DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGD--LRAEAQKRAEQ 450 (578)
T ss_pred --------hHHHHHHhhhccC--CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCch--hHHHHHHHHHH
Confidence 1122332 3343 244799999999999999999999988755 789999999998 56778777776
Q ss_pred CC--CceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEcccccccc
Q 007873 455 YP--EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE 532 (586)
Q Consensus 455 ~~--~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~ 532 (586)
++ +++.+.+. .+++..+|+.+|++++||.+|+||++++|||+||+|||+|+.||..|+|.++.+|+++
T Consensus 451 lgL~d~V~FlG~--~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LV-------- 520 (578)
T PRK15490 451 LGILERILFVGA--SRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFIL-------- 520 (578)
T ss_pred cCCCCcEEECCC--hhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEE--------
Confidence 65 45666654 3456789999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHH---HHHhcCHHHHHHHHHHH---HHhcCCHHHHHHHHHHHh
Q 007873 533 AVDPVDVAAVSTTVRR---ALATYGTQALAEMMKNG---MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 533 ~v~~~d~~~la~~I~~---ll~~~~~~~~~~~~~~~---~~~~fsw~~~a~~~~~~~ 583 (586)
++.|++++++.+.. +.+. ......|++++ +.++|||+.++++|.+.+
T Consensus 521 --p~~D~~aLa~ai~lA~aL~~l--l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 521 --DDAQTVNLDQACRYAEKLVNL--WRSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred --CCCChhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 99999998887743 3333 23344566666 468999999999999865
No 59
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=100.00 E-value=8.2e-31 Score=281.09 Aligned_cols=441 Identities=17% Similarity=0.215 Sum_probs=265.6
Q ss_pred EeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEecCCCc-cccC-CcceE---EE---EEeCCeeeEEEEEEEEeC
Q 007873 90 VGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRYDQY-KDAW-DTDVV---IE---LKVGDKIEKVRFFHCHKR 160 (586)
Q Consensus 90 v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~~~~~-~~~~-~~~~~---~~---~~~~~~~~~~~~~~~~~~ 160 (586)
++.++. .+.||+-+++..=|+.+.+. |-+..++.|...+- .... ..... .. ......--.+++.+..++
T Consensus 7 ~swEV~--NKVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i~ 84 (590)
T cd03793 7 VAWEVA--NKVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLIE 84 (590)
T ss_pred Eeehhh--ccCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEcC
Confidence 344543 37899999999888777654 88888888864321 1110 00000 00 000111234677777888
Q ss_pred CceEEE-EcCc-------cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhh-cccCCCCCCCCCCCCEE
Q 007873 161 GVDRVF-VDHP-------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYGEDVV 231 (586)
Q Consensus 161 gv~~~~-v~~~-------~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~pDvi 231 (586)
|-+++. +|.. .++...|...| +-++..+.|+.+... |...+..+++.+... . +-++| |
T Consensus 85 G~P~viL~D~~~~~~~~~~~~~~lW~~~~--i~s~~~~~d~nea~~-fgy~~~~~i~~~~~~~~---------~~~~d-V 151 (590)
T cd03793 85 GYPKVVLFDIGSAAWKLDEWKGELWELCG--IGSPEGDRETNDAII-FGFLVAWFLGEFAEQFD---------DEPAV-V 151 (590)
T ss_pred CCCeEEEEeCchhhhhHHHHHHHHHHHcC--CCCCCCCCcchHHHH-HHHHHHHHHHHHHhhcc---------CCCCe-E
Confidence 877654 4432 23334675444 444555566655443 444444444433322 1 12588 9
Q ss_pred EEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCcccccc-CcccccccCCChhhccccccccCC---CCCcCCcch
Q 007873 232 FVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRF-AFEDFGLLNLPAQFKSSFDFIDGY---NKPVRGRKI 307 (586)
Q Consensus 232 i~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 307 (586)
+|+|+|+++....++++.. .++|+|+|+|.... ||. ..+. ..+...+...+.- .+.-...+.
T Consensus 152 iH~HeWm~g~a~~~lK~~~------~~VptVfTtHAT~~-GR~l~~g~-------~~~y~~l~~~~~d~eA~~~~I~~r~ 217 (590)
T cd03793 152 AHFHEWQAGVGLPLLRKRK------VDVSTIFTTHATLL-GRYLCAGN-------VDFYNNLDYFDVDKEAGKRGIYHRY 217 (590)
T ss_pred EEEcchhHhHHHHHHHHhC------CCCCEEEEeccccc-ccccccCC-------cccchhhhhcchhhhhhcccchHHH
Confidence 9999999999999999643 58999999997765 653 1111 0111111000100 000011233
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCcccccccc----
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK---- 383 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~---- 383 (586)
..++.+...||.++|||+.++.++.. .++.+++ + |||||+|+..|.+..+. . ... ..++
T Consensus 218 ~iE~~aa~~Ad~fttVS~it~~E~~~--Ll~~~pd------~--ViPNGid~~~f~~~~e~-~-----~~~-~~~k~ki~ 280 (590)
T cd03793 218 CIERAAAHCAHVFTTVSEITAYEAEH--LLKRKPD------V--VLPNGLNVKKFSALHEF-Q-----NLH-AQSKEKIN 280 (590)
T ss_pred HHHHHHHhhCCEEEECChHHHHHHHH--HhCCCCC------E--EeCCCcchhhcccchhh-h-----hhh-HHhhhhhh
Confidence 45678889999999999999999996 3677765 3 99999999999775421 0 000 0000
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEE-EecCcc-ccCHHHHHHHHhhccc------CC---eEEEEEeCCC-----------
Q 007873 384 PLLKEALQAEVGLPVDRNIPVIGF-IGRLEE-QKGSDILAAAIPHFIK------EN---VQIIVLGTGK----------- 441 (586)
Q Consensus 384 ~~~~~~l~~~~gl~~~~~~~~i~~-iGrl~~-~KG~d~Ll~A~~~l~~------~~---v~lvIvG~g~----------- 441 (586)
......++..++++. +.++++| +||++. +||+|.||+|+++|.. .+ +-|+|+=.+.
T Consensus 281 ~f~~~~~~~~~~~~~--d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~ 358 (590)
T cd03793 281 EFVRGHFYGHYDFDL--DKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQ 358 (590)
T ss_pred HHHHHHHhhhcCCCC--CCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcch
Confidence 011223455567653 4477777 799998 9999999999999865 22 3344433221
Q ss_pred ---hhhHHHHHHHHHH----------------------------------------------------------------
Q 007873 442 ---KPMEKQLEQLEIL---------------------------------------------------------------- 454 (586)
Q Consensus 442 ---~~~~~~l~~l~~~---------------------------------------------------------------- 454 (586)
+...+.++++..+
T Consensus 359 ~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~ 438 (590)
T cd03793 359 AVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRI 438 (590)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHh
Confidence 0111112111000
Q ss_pred -C----CC--ceEEEeccC-------hHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCc----ccccc
Q 007873 455 -Y----PE--KARGVAKFN-------IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL----VDTVE 516 (586)
Q Consensus 455 -~----~~--~v~~~~~~~-------~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~----~e~v~ 516 (586)
+ .+ ++.++..|. +....+++++||++++||++|+||++++|||+||+|||+|+.+|+ .|++.
T Consensus 439 ~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~ 518 (590)
T cd03793 439 QLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIE 518 (590)
T ss_pred cCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhc
Confidence 0 01 344555441 123556999999999999999999999999999999999999998 56665
Q ss_pred cC-cceEEEc-cccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH----HHhcCCHHHHHHHHHHHhcC
Q 007873 517 EG-FTGFQMG-SFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG----MAQDLSWKVSIGTVQEEDSL 585 (586)
Q Consensus 517 ~g-~~G~~~~-~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~----~~~~fsw~~~a~~~~~~~~~ 585 (586)
++ ..|+.+- +. ..--+.++++|+++|.++++. +.++.+.++. .++.|+|++.++.|.+...+
T Consensus 519 ~~~~~gi~V~~r~----~~~~~e~v~~La~~m~~~~~~---~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~ 586 (590)
T cd03793 519 DPESYGIYIVDRR----FKSPDESVQQLTQYMYEFCQL---SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQL 586 (590)
T ss_pred cCCCceEEEecCC----ccchHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 54 3566650 00 000145688888888888854 2333333332 46889999999999986643
No 60
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.98 E-value=4.3e-32 Score=270.57 Aligned_cols=235 Identities=40% Similarity=0.681 Sum_probs=175.2
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCC-cceEEE--------EEeCCeeeEEEEEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD-TDVVIE--------LKVGDKIEKVRFFH 156 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~ 156 (586)
||++|+.|++|+.++||+|+++..|+++|+++||+|+|++|.|+....... .....+ +.++. ...+++++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 799999999999999999999999999999999999999999865555431 111111 12221 15677888
Q ss_pred EEeCCceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecC
Q 007873 157 CHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND 236 (586)
Q Consensus 157 ~~~~gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~ 236 (586)
...+|+++++++++.++.+ ..+|++. +.+|.|+..||.+|+++++++++.+++ +|| |||+||
T Consensus 80 ~~~~~v~v~~i~~~~~f~r------~~iY~~~-~~~~~d~~~rf~~fs~a~le~~~~l~~----------~pD-IIH~hD 141 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDR------PGIYGDN-GGDYPDNAERFAFFSRAALELLKKLGW----------KPD-IIHCHD 141 (245)
T ss_dssp EEETTEEEEEEESHHHHGS------SSSSBST-SSBHTTHHHHHHHHHHHHHHHHCTCT-----------S-S-EEEEEC
T ss_pred EEcCCccEEEecChhhccc------cceeccC-CCcchhHHHHHHHHHHHHHHHHHhhCC----------CCC-EEEecC
Confidence 8889999999999999876 5699876 788999999999999999999998754 599 999999
Q ss_pred CccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhc
Q 007873 237 WHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILE 316 (586)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (586)
|+++++|.+++..++..+.+.++|+++||||+.+||.++...+..+++|.......+. ......+++++.++..
T Consensus 142 W~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~------~~~~~~in~lk~gi~~ 215 (245)
T PF08323_consen 142 WHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDE------YEFYGQINFLKAGIVY 215 (245)
T ss_dssp GGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTT------TEETTEEEHHHHHHHH
T ss_pred chHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccc------cccccccCHHHHHHHh
Confidence 9999999999999877777789999999999999999998888888888654322111 1123478999999999
Q ss_pred CCEEEEeCHHHHHHHhcCccCCCcchhhhh
Q 007873 317 SDMVLTVSPHYAQELVSGEDKGVELDNIIR 346 (586)
Q Consensus 317 ad~vitvS~~~~~~l~~~~~~g~~~~~~~~ 346 (586)
||.|+|||+.+++++.. ..+|..++.+++
T Consensus 216 AD~v~TVS~~Ya~Ei~~-~~~g~GL~~~l~ 244 (245)
T PF08323_consen 216 ADKVTTVSPTYAREIQT-PEFGEGLEGLLR 244 (245)
T ss_dssp SSEEEESSHHHHHHTTS-HHHHTT-HHHHH
T ss_pred cCEeeeCCHHHHHHHhC-cccCCChHHHhc
Confidence 99999999999999996 345556665554
No 61
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=7.9e-31 Score=280.81 Aligned_cols=222 Identities=15% Similarity=0.130 Sum_probs=171.9
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHH
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
.+++..++.+|.++++|+..++.+.+. .+.. ..++.+||||+|.+.|.|....
T Consensus 164 ~~e~~~~~~ad~vi~~S~~~~~~l~~~--~~~~------~~~v~vipngvd~~~f~~~~~~------------------- 216 (397)
T TIGR03087 164 AYERAIAARFDAATFVSRAEAELFRRL--APEA------AGRITAFPNGVDADFFSPDRDY------------------- 216 (397)
T ss_pred HHHHHHHhhCCeEEEcCHHHHHHHHHh--CCCC------CCCeEEeecccchhhcCCCccc-------------------
Confidence 345677889999999999999998752 2222 2389999999999988765321
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccccCHHHHH----HHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEE
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILA----AAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 461 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll----~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~ 461 (586)
...++ .+.++|+|+|++.+.||++.++ ++++.+.+ ++++|+|+|+|+. +.++++... .++.+
T Consensus 217 -----~~~~~--~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~---~~~~~l~~~--~~V~~ 284 (397)
T TIGR03087 217 -----PNPYP--PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS---PAVRALAAL--PGVTV 284 (397)
T ss_pred -----cCCCC--CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh---HHHHHhccC--CCeEE
Confidence 00011 2447899999999999999988 45555543 7899999999973 245555432 34777
Q ss_pred EeccChHHHHHHHHhccEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHH
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVA 540 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~ 540 (586)
.+..+ ++..+++.||++|+||+. |++|++++|||+||+|||+|+.++ ..+..++.+|+++ . +|++
T Consensus 285 ~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~-~~i~~~~~~g~lv----------~-~~~~ 350 (397)
T TIGR03087 285 TGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAA-EGIDALPGAELLV----------A-ADPA 350 (397)
T ss_pred eeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccc-ccccccCCcceEe----------C-CCHH
Confidence 76654 356799999999999984 999999999999999999999753 2333445678886 5 8999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 541 AVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 541 ~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
+++++|.+++++ ++.+++|+++++ .++|||+..++++.+.++
T Consensus 351 ~la~ai~~ll~~--~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 351 DFAAAILALLAN--PAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHcC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999998 888889999885 478999999999988754
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=4.3e-30 Score=277.84 Aligned_cols=209 Identities=16% Similarity=0.125 Sum_probs=161.6
Q ss_pred CCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCC
Q 007873 317 SDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL 396 (586)
Q Consensus 317 ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl 396 (586)
+|.|+++|.... .+.. . .+. ..||||++.|.|... ...++++|+
T Consensus 499 cD~VIaPS~atq-~L~~---~-----------vI~-nVnGVDte~F~P~~r--------------------~~~~r~lgi 542 (794)
T PLN02501 499 CHKVLRLSAATQ-DLPK---S-----------VIC-NVHGVNPKFLKIGEK--------------------VAEERELGQ 542 (794)
T ss_pred CCEEEcCCHHHH-Hhcc---c-----------cee-ecccccccccCCcch--------------------hHHHHhcCC
Confidence 899999997777 3321 1 222 237999999998642 122245666
Q ss_pred CCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHH
Q 007873 397 PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 474 (586)
Q Consensus 397 ~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l 474 (586)
+..+ +.++|+||+.++||++.|++|++.+.+ ++++|+|+|+|+ ..+.+++++.+++.++.+.+.. +....+|
T Consensus 543 ~~~~--kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP--~reeLe~la~eLgL~V~FLG~~--dd~~~ly 616 (794)
T PLN02501 543 QAFS--KGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGE--DAHEVQRAAKRLDLNLNFLKGR--DHADDSL 616 (794)
T ss_pred cccc--CceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCc--cHHHHHHHHHHcCCEEEecCCC--CCHHHHH
Confidence 5333 458999999999999999999998865 689999999998 5677888877766445444332 2334699
Q ss_pred HhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcC
Q 007873 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 554 (586)
Q Consensus 475 ~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~ 554 (586)
+.+|+||+||..|+||++++||||||+|||+++.+|. +++.++.+|++ .+|+++++++|.+++++
T Consensus 617 asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll------------~~D~EafAeAI~~LLsd-- 681 (794)
T PLN02501 617 HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLT------------YKTSEDFVAKVKEALAN-- 681 (794)
T ss_pred HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEe------------cCCHHHHHHHHHHHHhC--
Confidence 9999999999999999999999999999999999985 44777888885 38999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007873 555 TQALAEMMKNGMAQDLSWKVSIGTVQEEDSL 585 (586)
Q Consensus 555 ~~~~~~~~~~~~~~~fsw~~~a~~~~~~~~~ 585 (586)
++....+.+ ...|||+.+++++++..++
T Consensus 682 ~~~rl~~~a---~~~~SWeAaadrLle~~~~ 709 (794)
T PLN02501 682 EPQPLTPEQ---RYNLSWEAATQRFMEYSDL 709 (794)
T ss_pred chhhhHHHH---HhhCCHHHHHHHHHHhhcc
Confidence 433322222 4589999999999997654
No 63
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=3.3e-29 Score=258.45 Aligned_cols=335 Identities=21% Similarity=0.233 Sum_probs=228.8
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++++..+. .||.+.++..|+++|.+.||+|.+++............. ... .....
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~------------~~~-------~~~~~ 57 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPS------------NVK-------LIPVR 57 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccccccc------------chh-------hhcee
Confidence 6899998752 699999999999999999999999997643221110000 000 00000
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCC-ccchHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW-HTSLIPC 244 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~-~~~~~~~ 244 (586)
... .. .+ . .........+.++.. +|| +|++|.. ...++..
T Consensus 58 ~~~--~~-----------~~--------~-----~~~~~~~~~~~~~~~------------~~d-ii~~~~~~~~~~~~~ 98 (353)
T cd03811 58 VLK--LK-----------SL--------R-----DLLAILRLRRLLRKE------------KPD-VVISHLTTTPNVLAL 98 (353)
T ss_pred eee--cc-----------cc--------c-----chhHHHHHHHHHHhc------------CCC-EEEEcCccchhHHHH
Confidence 000 00 00 0 001122233333332 599 8888876 3333332
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
+.. . .++|+++++|+......... .......+..+..+|.++++|
T Consensus 99 ~~~-~-------~~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~d~ii~~s 143 (353)
T cd03811 99 LAA-R-------LGTKLIVWEHNSLSLELKRK---------------------------LRLLLLIRKLYRRADKIVAVS 143 (353)
T ss_pred HHh-h-------cCCceEEEEcCcchhhhccc---------------------------hhHHHHHHhhccccceEEEec
Confidence 222 1 26899999998654211100 000024566788999999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+..++.+.+. ++.+ ..++.+||||+|...+.+.... . . ..+. ..+.++
T Consensus 144 ~~~~~~~~~~--~~~~------~~~~~vi~~~~~~~~~~~~~~~------------------~-~---~~~~--~~~~~~ 191 (353)
T cd03811 144 EGVKEDLLKL--LGIP------PDKIEVIYNPIDIEEIRALAEE------------------P-L---ELGI--PPDGPV 191 (353)
T ss_pred cchhhhHHHh--hcCC------ccccEEecCCcChhhcCcccch------------------h-h---hcCC--CCCceE
Confidence 9999998862 3322 2389999999998887665321 0 0 1222 235589
Q ss_pred EEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccEE
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
|+|+||+.+.||++.+++|+..+.+ ++++|+|+|.|+ ....++++..+++ .++...+.. +++..+++.||++
T Consensus 192 i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~ 267 (353)
T cd03811 192 ILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP--LREELEALAKELGLADRVHFLGFQ--SNPYPYLKAADLF 267 (353)
T ss_pred EEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc--cHHHHHHHHHhcCCCccEEEeccc--CCHHHHHHhCCEE
Confidence 9999999999999999999999976 589999999987 3444555555544 356655543 3466899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHH---HHHHHHHHHhcCHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAV---STTVRRALATYGTQA 557 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~l---a~~I~~ll~~~~~~~ 557 (586)
++||.+|++|++++|||++|+|||+++.||+.|++.++.+|+++ +++|++++ ++.+..++++ ++.
T Consensus 268 i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~~~~~~~~~~~~i~~~~~~--~~~ 335 (353)
T cd03811 268 VLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILEDGENGLLV----------PVGDEAALAAAALALLDLLLD--PEL 335 (353)
T ss_pred EeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEE----------CCCCHHHHHHHHHHHHhccCC--hHH
Confidence 99999999999999999999999999999999999999999998 99999999 4555555555 666
Q ss_pred HHHHHHHH
Q 007873 558 LAEMMKNG 565 (586)
Q Consensus 558 ~~~~~~~~ 565 (586)
+.++++++
T Consensus 336 ~~~~~~~~ 343 (353)
T cd03811 336 RERLAAAA 343 (353)
T ss_pred HHHHHHHH
Confidence 77777754
No 64
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=1.9e-29 Score=265.12 Aligned_cols=206 Identities=19% Similarity=0.239 Sum_probs=172.8
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHH
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
.+.+..++++|.++++|+..++.+.+. ++ .+..+|+||+|.+.|.+...
T Consensus 145 ~~~~~~~~~~d~ii~~S~~~~~~~~~~--~~---------~~~~vi~~~~d~~~~~~~~~-------------------- 193 (351)
T cd03804 145 IWDRRSAARVDYFIANSRFVARRIKKY--YG---------RDATVIYPPVDTDRFTPAEE-------------------- 193 (351)
T ss_pred HHHHHHhcCCCEEEECCHHHHHHHHHH--hC---------CCcEEECCCCCHhhcCcCCC--------------------
Confidence 344666789999999999999998752 22 15678999999888765421
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccCh
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (586)
..+.++|+||+.+.||++.+++|+..+. ++|+|+|+|+ ..+.+++ ....++.+.+..+.
T Consensus 194 -------------~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~--~~~~l~~---~~~~~V~~~g~~~~ 252 (351)
T cd03804 194 -------------KEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGP--ELDRLRA---KAGPNVTFLGRVSD 252 (351)
T ss_pred -------------CCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECCh--hHHHHHh---hcCCCEEEecCCCH
Confidence 2357999999999999999999999883 8999999998 3444544 44567999998899
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
+++..+++.||++++||. |+||++++|||+||+|||+++.||..|++.++.+|+++ +++|+++++++|.
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~----------~~~~~~~la~~i~ 321 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILF----------EEQTVESLAAAVE 321 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEe----------CCCCHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 007873 548 RALATYGTQALAEMMKNGMAQDLSWKVSIGTV 579 (586)
Q Consensus 548 ~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~ 579 (586)
+++++.. ...+++++++ ++|+|++..+++
T Consensus 322 ~l~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 350 (351)
T cd03804 322 RFEKNED-FDPQAIRAHA--ERFSESRFREKI 350 (351)
T ss_pred HHHhCcc-cCHHHHHHHH--HhcCHHHHHHHh
Confidence 9999831 3445555543 579999998875
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=1.9e-28 Score=252.71 Aligned_cols=225 Identities=16% Similarity=0.223 Sum_probs=170.9
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHH
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
++..+.+.+.+.++++|+..++.+.+ .|++. .+ .|+||+|++.|.|..+. .
T Consensus 84 ~~y~~~m~~~~~vIavS~~t~~~L~~---~G~~~-------~i-~I~~GVD~~~f~p~~~~------------------~ 134 (335)
T PHA01633 84 EIVNKYLLQDVKFIPNSKFSAENLQE---VGLQV-------DL-PVFHGINFKIVENAEKL------------------V 134 (335)
T ss_pred HHHHHHHhcCCEEEeCCHHHHHHHHH---hCCCC-------ce-eeeCCCChhhcCccchh------------------h
Confidence 44555667788999999999999985 56652 23 47899999998875321 2
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C----CeEEEEEeCCChhhHHHHHHHHHHCCCceEE
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGKKPMEKQLEQLEILYPEKARG 461 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~----~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~ 461 (586)
..++++++.+.. +.++|+++||+.++||++.|++|++++.+ + +++++++|.+ .++++. +++++.+
T Consensus 135 ~~~r~~~~~~~~-~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------~~~~l~--l~~~V~f 205 (335)
T PHA01633 135 PQLKQKLDKDFP-DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------QFTQLE--VPANVHF 205 (335)
T ss_pred HHHHHHhCcCCC-CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------HHHHcC--CCCcEEE
Confidence 345666664322 45799999999999999999999999865 3 4688888742 233332 4456777
Q ss_pred Eecc---ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc------------------Ccc
Q 007873 462 VAKF---NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------------------GFT 520 (586)
Q Consensus 462 ~~~~---~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~------------------g~~ 520 (586)
.+.+ +.+++..+|++||++|+||++|+||++++|||+||+|||+++.||+.|++.+ ..+
T Consensus 206 ~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~ 285 (335)
T PHA01633 206 VAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ 285 (335)
T ss_pred EecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc
Confidence 7533 5678889999999999999999999999999999999999999999997552 234
Q ss_pred eEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007873 521 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 521 G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 581 (586)
||.+ ++.|+++|+++|.+++....++.+ .+.....++.|+|+.++++|++
T Consensus 286 g~~~----------~~~d~~~la~ai~~~~~~~~~~~~-~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 286 KWKI----------HKFQIEDMANAIILAFELQDREER-SMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eeee----------cCCCHHHHHHHHHHHHhccChhhh-hHHHHHHHHhcCHHHHHHHhhC
Confidence 6665 889999999999999776433333 2222345799999999999974
No 66
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.97 E-value=3.6e-28 Score=260.96 Aligned_cols=219 Identities=15% Similarity=0.135 Sum_probs=183.3
Q ss_pred hhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHH
Q 007873 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (586)
Q Consensus 309 ~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (586)
+.+..+..+|.|+++|+..++.+.+. ++...+ ++.+++||++...+.+..
T Consensus 176 ~~~~~~~~~d~ii~~S~~~~~~l~~~--~~~~~~------ki~vi~~gv~~~~~~~~~---------------------- 225 (407)
T cd04946 176 LRRYLLSSLDAVFPCSEQGRNYLQKR--YPAYKE------KIKVSYLGVSDPGIISKP---------------------- 225 (407)
T ss_pred HHHHHHhcCCEEEECCHHHHHHHHHH--CCCccc------cEEEEECCcccccccCCC----------------------
Confidence 34556789999999999999998853 444433 889999999877654321
Q ss_pred HHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C--CeEEEEEeCCChhhHHHHHHHHHHCC--CceEEE
Q 007873 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E--NVQIIVLGTGKKPMEKQLEQLEILYP--EKARGV 462 (586)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~--~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~ 462 (586)
..++.+.|+++||+.+.||++.+++|+.++.+ + +++++++|+|+ ..+.+++++.+.+ .++.+.
T Consensus 226 ---------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~~~~~~~V~f~ 294 (407)
T cd04946 226 ---------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAESKPENISVNFT 294 (407)
T ss_pred ---------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHhcCCCceEEEe
Confidence 11245789999999999999999999999976 2 57788999988 5566777765443 367888
Q ss_pred eccChHHHHHHHHh--ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCC-CCH
Q 007873 463 AKFNIPLAHMIIAG--ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP-VDV 539 (586)
Q Consensus 463 ~~~~~~~~~~~l~~--aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~-~d~ 539 (586)
+..+.+++..+++. ||++++||..|++|++++|||+||+|||+|+.||..|++.++.+|+++ ++ +|+
T Consensus 295 G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~----------~~~~~~ 364 (407)
T cd04946 295 GELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLL----------SKDPTP 364 (407)
T ss_pred cCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEe----------CCCCCH
Confidence 87888888888875 789999999999999999999999999999999999999999999997 65 589
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHH
Q 007873 540 AAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQ 580 (586)
Q Consensus 540 ~~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~ 580 (586)
++++++|.+++++ ++.+++|+++++ .++|||+...+++.
T Consensus 365 ~~la~~I~~ll~~--~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 365 NELVSSLSKFIDN--EEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 9999999999998 889999999985 58999999999875
No 67
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.96 E-value=2e-28 Score=267.50 Aligned_cols=216 Identities=16% Similarity=0.089 Sum_probs=173.5
Q ss_pred HhhcCCEEEEeCHHHHHHHhcCc-cCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHH
Q 007873 313 GILESDMVLTVSPHYAQELVSGE-DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (586)
Q Consensus 313 ~~~~ad~vitvS~~~~~~l~~~~-~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (586)
....+|.++++|+..++.+.... .++.. ..++.+||||++...+.|..
T Consensus 267 ~~~~~D~iI~~S~~~~~~l~~~~~~~~~~------~~ki~viP~g~~~~~~~~~~------------------------- 315 (500)
T TIGR02918 267 NADYIDFFITATDIQNQILKNQFKKYYNI------EPRIYTIPVGSLDELQYPEQ------------------------- 315 (500)
T ss_pred chhhCCEEEECCHHHHHHHHHHhhhhcCC------CCcEEEEcCCCcccccCccc-------------------------
Confidence 35678999999999888877521 12221 23799999998654443321
Q ss_pred HHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccCh
Q 007873 392 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNI 467 (586)
Q Consensus 392 ~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~ 467 (586)
.+....|+|+||+.+.||++.|++|+.++.+ ++++|+|+|+|+ ..+.++++..+++ +++.+.+. .
T Consensus 316 -------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~--~~~~l~~~i~~~~l~~~V~f~G~-~- 384 (500)
T TIGR02918 316 -------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGG--EKQKLQKIINENQAQDYIHLKGH-R- 384 (500)
T ss_pred -------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECch--hHHHHHHHHHHcCCCCeEEEcCC-C-
Confidence 1234689999999999999999999999865 799999999998 4567888777654 35666553 2
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc-CcccccccCcceEEEccccccccCCCC----CC----
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDP----VD---- 538 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~~~~~~~~~~~~v~~----~d---- 538 (586)
.+..+++.||++|+||..|+||++++||||||+|||+++.+ |.+|+|.+|.+|+++ ++ .|
T Consensus 385 -~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv----------~~~~~~~d~~~~ 453 (500)
T TIGR02918 385 -NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLI----------PIDEEEDDEDQI 453 (500)
T ss_pred -CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEE----------eCCccccchhHH
Confidence 35579999999999999999999999999999999999986 899999999999998 52 23
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHhc
Q 007873 539 VAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 539 ~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~ 584 (586)
+++||++|.++++ ++.+++|++++. +++|||+.++++|++...
T Consensus 454 ~~~la~~I~~ll~---~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 454 ITALAEKIVEYFN---SNDIDAFHEYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred HHHHHHHHHHHhC---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8999999999994 456888999885 689999999999987653
No 68
>PHA01630 putative group 1 glycosyl transferase
Probab=99.96 E-value=1.6e-28 Score=255.38 Aligned_cols=230 Identities=12% Similarity=0.120 Sum_probs=172.4
Q ss_pred hhhhHH-hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHH
Q 007873 308 NWMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (586)
Q Consensus 308 ~~~~~~-~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (586)
.|+... ...+|.|+++|+..++.+.+ .|++. ++++.+||||+|.+.|.|....
T Consensus 85 ~~~~~~~~~~ad~ii~~S~~~~~~l~~---~g~~~-----~~~i~vIpNGVd~~~f~~~~~~------------------ 138 (331)
T PHA01630 85 TALYFFRNQPVDEIVVPSQWSKNAFYT---SGLKI-----PQPIYVIPHNLNPRMFEYKPKE------------------ 138 (331)
T ss_pred HHHHHHhhccCCEEEECCHHHHHHHHH---cCCCC-----CCCEEEECCCCCHHHcCCCccc------------------
Confidence 445555 57899999999999999875 34431 2389999999999888765311
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEec
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 464 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~ 464 (586)
..+.+++++.|++.++||+|.|++|++++.+ ++++++|+|++.. +..+. ...+ + .+.
T Consensus 139 ------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~--~~~l~----~~~~-~--~~~ 197 (331)
T PHA01630 139 ------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML--DPRLF----GLNG-V--KTP 197 (331)
T ss_pred ------------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc--chhhc----cccc-e--ecc
Confidence 1133577788899999999999999999976 6899999997652 11111 1111 1 223
Q ss_pred cChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccc-c--------ccccCCC
Q 007873 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSF-S--------VDCEAVD 535 (586)
Q Consensus 465 ~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~-~--------~~~~~v~ 535 (586)
.+.+++..+|+.||++++||++|+||++++||||||+|||+|+.||+.|++.++.+|+++..- . ..|=.+.
T Consensus 198 v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v 277 (331)
T PHA01630 198 LPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFL 277 (331)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccccc
Confidence 466788899999999999999999999999999999999999999999999999999886210 0 0111222
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHH-HH--HHhcCCHHHHHHHHHHHhc
Q 007873 536 PVDVAAVSTTVRRALATYGTQALAEMMK-NG--MAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 536 ~~d~~~la~~I~~ll~~~~~~~~~~~~~-~~--~~~~fsw~~~a~~~~~~~~ 584 (586)
+.|.+++++.+.+++.++.++.++++.. ++ .+++|||+.++++|++.++
T Consensus 278 ~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 278 DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4478899999999998743344444443 33 4799999999999998765
No 69
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=9.9e-28 Score=254.55 Aligned_cols=244 Identities=15% Similarity=0.094 Sum_probs=175.8
Q ss_pred CCCEEEEecCCccc---hHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcC
Q 007873 227 GEDVVFVANDWHTS---LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVR 303 (586)
Q Consensus 227 ~pDvii~~h~~~~~---~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 303 (586)
+|| +||+|..... +.+.++.+. .++|+++++|+..+. ... .+.. ..+..
T Consensus 100 ~~D-vV~~~~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~-~~~------~~~~-------------~~~~~ 151 (371)
T PLN02275 100 RPD-VFLVQNPPSVPTLAVVKLACWL-------RRAKFVIDWHNFGYT-LLA------LSLG-------------RSHPL 151 (371)
T ss_pred CCC-EEEEeCCCCcHHHHHHHHHHHH-------hCCCEEEEcCCccHH-HHh------cccC-------------CCCHH
Confidence 699 8899864432 223333333 478999999976321 000 0000 00000
Q ss_pred Ccch-hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccc
Q 007873 304 GRKI-NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382 (586)
Q Consensus 304 ~~~~-~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~ 382 (586)
.+.. .+.+..++.+|.++++|+.+++.+.+. +|+ ++.+|+||. .+.|.|....
T Consensus 152 ~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~--~g~---------~i~vi~n~~-~~~f~~~~~~-------------- 205 (371)
T PLN02275 152 VRLYRWYERHYGKMADGHLCVTKAMQHELDQN--WGI---------RATVLYDQP-PEFFRPASLE-------------- 205 (371)
T ss_pred HHHHHHHHHHHHhhCCEEEECCHHHHHHHHHh--cCC---------CeEEECCCC-HHHcCcCCch--------------
Confidence 1122 334667788999999999999998751 343 278999994 5667664310
Q ss_pred cHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcc-------------------cCCeEEEEEeCCChh
Q 007873 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-------------------KENVQIIVLGTGKKP 443 (586)
Q Consensus 383 ~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~-------------------~~~v~lvIvG~g~~~ 443 (586)
. .+.. +...+++++||+.++||++.+++|+..+. .++++|+|+|+|+
T Consensus 206 ---------~--~~~~-~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~-- 271 (371)
T PLN02275 206 ---------I--RLRP-NRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP-- 271 (371)
T ss_pred ---------h--cccC-CCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC--
Confidence 0 0111 12357889999999999999999998872 2689999999998
Q ss_pred hHHHHHHHHHHCC-CceEEEec-cChHHHHHHHHhccEEEEcCC---CCCCcHHHHHHHHcCCcEEEcCCcCcccccccC
Q 007873 444 MEKQLEQLEILYP-EKARGVAK-FNIPLAHMIIAGADFILIPSR---FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG 518 (586)
Q Consensus 444 ~~~~l~~l~~~~~-~~v~~~~~-~~~~~~~~~l~~aDi~l~PS~---~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g 518 (586)
..+++++...+++ .++.+.+. .+.++++.+|+.||++++|+. .|++|++++||||||+|||+++.||..|+|.++
T Consensus 272 ~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g 351 (371)
T PLN02275 272 QKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDG 351 (371)
T ss_pred CHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCC
Confidence 5677777777665 35666664 477889999999999998642 488999999999999999999999999999999
Q ss_pred cceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 519 FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 519 ~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
.+|+++ + |+++|+++|.+++
T Consensus 352 ~~G~lv----------~--~~~~la~~i~~l~ 371 (371)
T PLN02275 352 KNGLLF----------S--SSSELADQLLELL 371 (371)
T ss_pred CCeEEE----------C--CHHHHHHHHHHhC
Confidence 999997 4 7999999998874
No 70
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.95 E-value=6.3e-27 Score=247.90 Aligned_cols=216 Identities=19% Similarity=0.181 Sum_probs=176.8
Q ss_pred hhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHH
Q 007873 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (586)
Q Consensus 309 ~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (586)
++...+..+|.++++|+..++.+... ++. ..++.+||||++...+.+...
T Consensus 150 ~~~~~~~~~d~ii~~s~~~~~~l~~~--~~~-------~~~v~~ip~g~~~~~~~~~~~--------------------- 199 (372)
T cd04949 150 YVFENLDKVDGVIVATEQQKQDLQKQ--FGN-------YNPIYTIPVGSIDPLKLPAQF--------------------- 199 (372)
T ss_pred HHHhChhhCCEEEEccHHHHHHHHHH--hCC-------CCceEEEcccccChhhcccch---------------------
Confidence 33344678999999999999988852 221 124899999999877655310
Q ss_pred HHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEec
Q 007873 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAK 464 (586)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~ 464 (586)
..+..+.|+++||+.+.||++.+++|+.++.+ ++++|+|+|.|. ....++++..+.+ +++.+.+
T Consensus 200 ---------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g- 267 (372)
T cd04949 200 ---------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGD--EEEKLKELIEELGLEDYVFLKG- 267 (372)
T ss_pred ---------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCc--hHHHHHHHHHHcCCcceEEEcC-
Confidence 01234789999999999999999999999865 789999999998 3445555555443 3455554
Q ss_pred cChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc-CcccccccCcceEEEccccccccCCCCCCHHHHH
Q 007873 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVS 543 (586)
Q Consensus 465 ~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la 543 (586)
+ .+++..+++.||++|+||..|+||++++|||++|+|||+++.+ |..|++.++.+|+++ +++|+++|+
T Consensus 268 ~-~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv----------~~~d~~~la 336 (372)
T cd04949 268 Y-TRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLV----------PKGDIEALA 336 (372)
T ss_pred C-CCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEe----------CCCcHHHHH
Confidence 3 4457789999999999999999999999999999999999987 899999999999998 999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHH
Q 007873 544 TTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTV 579 (586)
Q Consensus 544 ~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~ 579 (586)
++|.+++++ ++.+.+++++++ +++|||+.++++|
T Consensus 337 ~~i~~ll~~--~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 337 EAIIELLND--PKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred HHHHHHHcC--HHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 999999998 888999999985 5899999999875
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=2e-26 Score=250.41 Aligned_cols=291 Identities=16% Similarity=0.187 Sum_probs=207.6
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
.| +|+.||+|..++|.+++... .++|+++.+|-..+ ... |..+ | .
T Consensus 132 ~d-~iwihDyhl~llp~~lr~~~------~~~~i~~f~HipfP-----~~e~~~~l--p--------------------~ 177 (460)
T cd03788 132 GD-LVWVHDYHLLLLPQMLRERG------PDARIGFFLHIPFP-----SSEIFRCL--P--------------------W 177 (460)
T ss_pred CC-EEEEeChhhhHHHHHHHhhC------CCCeEEEEEeCCCC-----ChHHHhhC--C--------------------C
Confidence 57 99999999999999988764 57899999995433 111 1111 1 1
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchh--------hhhccCeeEecCCcccCCcCCCCccccccccCccc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDN--------IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~--------~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~ 378 (586)
...+...+..+|.|.+.+..+.+.+.+....-+.++. .-+..++.+||||+|++.|.+....
T Consensus 178 ~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~---------- 247 (460)
T cd03788 178 REELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAAS---------- 247 (460)
T ss_pred hHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcC----------
Confidence 1334466777999999998776665542211111110 0012478999999999988764311
Q ss_pred cccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CC----eEEEEEeCCC-------hhhH
Q 007873 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVLGTGK-------KPME 445 (586)
Q Consensus 379 ~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~----v~lvIvG~g~-------~~~~ 445 (586)
+..+..+++..+... +.++|+++||+.+.||++.+++|++.+.+ ++ ++|+++|.+. ..++
T Consensus 248 -----~~~~~~~~~~~~~~~--~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~ 320 (460)
T cd03788 248 -----PEVQERAAELRERLG--GRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELR 320 (460)
T ss_pred -----chhHHHHHHHHHhcC--CCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHH
Confidence 112233333344432 45899999999999999999999998865 43 7788887532 2355
Q ss_pred HHHHHHHHHCCC--------ceEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCCcCcc
Q 007873 446 KQLEQLEILYPE--------KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLV 512 (586)
Q Consensus 446 ~~l~~l~~~~~~--------~v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~~ 512 (586)
+++++++.+.+. .+.... ..+.+++..+|+.||++++||..|+||++++|||+||+| ||+|+.+|..
T Consensus 321 ~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~ 400 (460)
T cd03788 321 REVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA 400 (460)
T ss_pred HHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccch
Confidence 566655444221 243443 347788899999999999999999999999999999999 9999988888
Q ss_pred cccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 513 DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 513 e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
+. +.+|+++ +|.|++++|++|.+++++. ++.++++.++++ .++|||+..++++++..
T Consensus 401 ~~---~~~g~lv----------~p~d~~~la~ai~~~l~~~-~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 401 EE---LSGALLV----------NPYDIDEVADAIHRALTMP-LEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred hh---cCCCEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 77 4689998 9999999999999999873 355556665553 47899999999998753
No 72
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.95 E-value=4.7e-25 Score=232.68 Aligned_cols=341 Identities=16% Similarity=0.057 Sum_probs=228.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||++++.. .||...+..+|+++|.++||+|.+++.... .... .....|+++
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~-~~~~---------------------~~~~~g~~~ 53 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARG-MEAR---------------------LVPKAGIEF 53 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCc-hhhh---------------------ccccCCCcE
Confidence 899999864 588888899999999999999999987531 1000 001136666
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
+.++.+..... . ..........+...+..+.+.++. ++|| |||+|.+..++.+.
T Consensus 54 ~~~~~~~~~~~-------~---------~~~~l~~~~~~~~~~~~~~~~ik~---------~~pD-vv~~~~~~~~~~~~ 107 (357)
T PRK00726 54 HFIPSGGLRRK-------G---------SLANLKAPFKLLKGVLQARKILKR---------FKPD-VVVGFGGYVSGPGG 107 (357)
T ss_pred EEEeccCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHHh---------cCCC-EEEECCCcchhHHH
Confidence 66654322110 0 011111121223333333333321 2699 99999987766655
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
...+. .++|++++.|+..+ . ...+..+..+|.+++.+
T Consensus 108 ~~~~~-------~~~p~v~~~~~~~~---------------------------------~---~~~r~~~~~~d~ii~~~ 144 (357)
T PRK00726 108 LAARL-------LGIPLVIHEQNAVP---------------------------------G---LANKLLARFAKKVATAF 144 (357)
T ss_pred HHHHH-------cCCCEEEEcCCCCc---------------------------------c---HHHHHHHHHhchheECc
Confidence 54443 47899987764221 0 01133466899999998
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+....+ .+ ..++++|+||+|.+.+.+... +.+++++. +.++
T Consensus 145 ~~~~~~--------~~------~~~i~vi~n~v~~~~~~~~~~-----------------------~~~~~~~~--~~~~ 185 (357)
T PRK00726 145 PGAFPE--------FF------KPKAVVTGNPVREEILALAAP-----------------------PARLAGRE--GKPT 185 (357)
T ss_pred hhhhhc--------cC------CCCEEEECCCCChHhhcccch-----------------------hhhccCCC--CCeE
Confidence 843211 22 238999999999876654211 12345442 4578
Q ss_pred EEEEecCccccCHHHHH-HHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEc
Q 007873 405 IGFIGRLEEQKGSDILA-AAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll-~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~P 483 (586)
|+++|+....|+...++ +|++++.+....++++|.|. .++..+.+ . ++.++.+.+. . +....+++.||+++.+
T Consensus 186 i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~--~~~~~~~~-~-~~~~v~~~g~-~-~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 186 LLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGD--LEEVRAAY-A-AGINAEVVPF-I-DDMAAAYAAADLVICR 259 (357)
T ss_pred EEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCc--HHHHHHHh-h-cCCcEEEeeh-H-hhHHHHHHhCCEEEEC
Confidence 99999998888876555 99988865335677889987 34444344 3 4434443433 2 4567899999999987
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCCcC--------cccccccCcceEEEccccccccCCCCCC--HHHHHHHHHHHHHhc
Q 007873 484 SRFEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRALATY 553 (586)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~v~~g~~G~~~~~~~~~~~~v~~~d--~~~la~~I~~ll~~~ 553 (586)
+- +++++|||++|+|+|++..++ ..+.+.+..+|+++ +++| +++|+++|++++++
T Consensus 260 ~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~----------~~~~~~~~~l~~~i~~ll~~- 324 (357)
T PRK00726 260 AG----ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLI----------PQSDLTPEKLAEKLLELLSD- 324 (357)
T ss_pred CC----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEE----------EcccCCHHHHHHHHHHHHcC-
Confidence 62 689999999999999987653 23567778899997 7777 99999999999998
Q ss_pred CHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 554 GTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 554 ~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
++.+++|++++. .+.++-+.+++.+++..
T Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 325 -PERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred -HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 888899999885 57899999999988753
No 73
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.94 E-value=2.1e-25 Score=240.88 Aligned_cols=291 Identities=17% Similarity=0.182 Sum_probs=207.9
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
.| +|..||+|-.++|.+++... ++.++.|.+|-..+ ..+ |.. +| .
T Consensus 128 ~d-~vwvhDYhl~l~p~~lr~~~------~~~~igfFlHipfP-----~~e~f~~--lp--------------------~ 173 (456)
T TIGR02400 128 GD-IVWVHDYHLMLLPAMLRELG------VQNKIGFFLHIPFP-----SSEIYRT--LP--------------------W 173 (456)
T ss_pred CC-EEEEecchhhHHHHHHHhhC------CCCeEEEEEeCCCC-----ChHHHhh--CC--------------------c
Confidence 46 99999999999999999875 67899999994432 111 111 11 2
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcchh-----hhhccCeeEecCCcccCCcCCCCccccccccCcccc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN-----IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~~~-----~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~ 379 (586)
...+..++..+|.|-+.++.+++.+.+... .|.+.+. --+..++.++|||+|++.|.+....
T Consensus 174 r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~----------- 242 (456)
T TIGR02400 174 RRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKK----------- 242 (456)
T ss_pred HHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcC-----------
Confidence 244667888999999999999988775322 2221110 0133578999999999999764311
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C----CeEEEEEeC-----CC--hhhHH
Q 007873 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGT-----GK--KPMEK 446 (586)
Q Consensus 380 ~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~----~v~lvIvG~-----g~--~~~~~ 446 (586)
.........++++++ +.++|+++||+++.||++.+++|++++.+ + ++.|+++|. ++ ..+++
T Consensus 243 -~~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~ 316 (456)
T TIGR02400 243 -PSVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRR 316 (456)
T ss_pred -hhHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHH
Confidence 000011223555552 45799999999999999999999999864 3 366887753 22 22444
Q ss_pred HHHHHHHHCCC---c-----eEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCCcCccc
Q 007873 447 QLEQLEILYPE---K-----ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLVD 513 (586)
Q Consensus 447 ~l~~l~~~~~~---~-----v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~~e 513 (586)
+++++..+.++ . +.... .++.+++..+|+.||++++||..|+||++++||||||+| +|+|+.+|..+
T Consensus 317 ~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~ 396 (456)
T TIGR02400 317 QVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ 396 (456)
T ss_pred HHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH
Confidence 55555332111 1 22222 346788899999999999999999999999999999999 99999888888
Q ss_pred ccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 514 TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 514 ~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
.+. +|+++ +|.|++++|++|.++++++ ++.++++.+.. ....+|+..-++++++..
T Consensus 397 ~l~---~gllV----------nP~d~~~lA~aI~~aL~~~-~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 397 ELN---GALLV----------NPYDIDGMADAIARALTMP-LEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HhC---CcEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 874 78987 9999999999999999864 34444444433 246799999999998754
No 74
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.93 E-value=5.6e-24 Score=223.26 Aligned_cols=322 Identities=15% Similarity=0.094 Sum_probs=206.2
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||+|++.+ .||.......|+++|.++||+|.+++.... ... ... ...|+++
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~-~~~-------------------~~~--~~~g~~~ 52 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRG-LEK-------------------RLV--PKAGIEF 52 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCc-chh-------------------ccc--ccCCCce
Confidence 789988865 355555567999999999999999986421 110 000 1135666
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
+.++...+... . ....+.....+.....++.+.+.. ++|| +||+|.+.......
T Consensus 53 ~~i~~~~~~~~-------~---------~~~~l~~~~~~~~~~~~l~~~i~~---------~~pD-vVi~~~~~~~~~~~ 106 (348)
T TIGR01133 53 YFIPVGGLRRK-------G---------SFRLIKTPLKLLKAVFQARRILKK---------FKPD-AVIGFGGYVSGPAG 106 (348)
T ss_pred EEEeccCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHHh---------cCCC-EEEEcCCcccHHHH
Confidence 65543221110 0 111111111222233333332321 3699 88888766555444
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
.+.+. .++|++++.|+..+ . ...+...+.+|.++++|
T Consensus 107 ~~~~~-------~~~p~v~~~~~~~~---------------------------------~---~~~~~~~~~~d~ii~~~ 143 (348)
T TIGR01133 107 LAAKL-------LGIPLFHHEQNAVP---------------------------------G---LTNKLLSRFAKKVLISF 143 (348)
T ss_pred HHHHH-------cCCCEEEECCCCCc---------------------------------c---HHHHHHHHHhCeeEECc
Confidence 44443 47788754332110 0 11233466899999999
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcE
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 404 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 404 (586)
+..++.+. ..+|+||+|...+.+... +++++++. +.++
T Consensus 144 ~~~~~~~~-----------------~~~i~n~v~~~~~~~~~~-----------------------~~~~~~~~--~~~~ 181 (348)
T TIGR01133 144 PGAKDHFE-----------------AVLVGNPVRQEIRSLPVP-----------------------RERFGLRE--GKPT 181 (348)
T ss_pred hhHhhcCC-----------------ceEEcCCcCHHHhcccch-----------------------hhhcCCCC--CCeE
Confidence 97765532 368999998766543211 22456653 4578
Q ss_pred EEEEecCccccCHHH-HHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 405 IGFIGRLEEQKGSDI-LAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 405 i~~iGrl~~~KG~d~-Ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
|+++|+....|++.. +++|+..+.+.++++++ +|++. . +.+++...+++ +...+.|.......+|+.||+++.
T Consensus 182 i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--~-~~l~~~~~~~~--l~~~v~~~~~~~~~~l~~ad~~v~ 256 (348)
T TIGR01133 182 ILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND--L-EKVKNVYQELG--IEAIVTFIDENMAAAYAAADLVIS 256 (348)
T ss_pred EEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch--H-HHHHHHHhhCC--ceEEecCcccCHHHHHHhCCEEEE
Confidence 999998888899765 55888888665677654 44443 2 46666655554 333334443367789999999998
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCCcC-------cccccccCcceEEEccccccccCCCCCC--HHHHHHHHHHHHHhc
Q 007873 483 PSRFEPCGLIQLHAMRYGTVPIVASTGG-------LVDTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRALATY 553 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg-------~~e~v~~g~~G~~~~~~~~~~~~v~~~d--~~~la~~I~~ll~~~ 553 (586)
++ + |++++|||++|+|+|+++.+| ..+++.++.+|+++ ++.| +++|+++|.+++++
T Consensus 257 ~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~----------~~~~~~~~~l~~~i~~ll~~- 321 (348)
T TIGR01133 257 RA---G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVI----------RQKELLPEKLLEALLKLLLD- 321 (348)
T ss_pred CC---C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEE----------ecccCCHHHHHHHHHHHHcC-
Confidence 65 2 789999999999999998654 23578889999987 7766 99999999999988
Q ss_pred CHHHHHHHHHHHH
Q 007873 554 GTQALAEMMKNGM 566 (586)
Q Consensus 554 ~~~~~~~~~~~~~ 566 (586)
++.+++|++++.
T Consensus 322 -~~~~~~~~~~~~ 333 (348)
T TIGR01133 322 -PANLEAMAEAAR 333 (348)
T ss_pred -HHHHHHHHHHHH
Confidence 888899999874
No 75
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.93 E-value=7.3e-24 Score=222.54 Aligned_cols=334 Identities=14% Similarity=0.057 Sum_probs=216.5
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
+|++.+.. +||...++..|+++|.++||+|.+++.......+ .....|++++
T Consensus 1 ~~~~~~~~------~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~----------------------~~~~~~~~~~ 52 (350)
T cd03785 1 RILIAGGG------TGGHIFPALALAEELRERGAEVLFLGTKRGLEAR----------------------LVPKAGIPLH 52 (350)
T ss_pred CEEEEecC------chhhhhHHHHHHHHHHhCCCEEEEEECCCcchhh----------------------cccccCCceE
Confidence 45666654 6888889999999999999999999876321110 0011356666
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCY 245 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~ 245 (586)
.++.+.+..+ . .......+..+.+...++.+.+. .++|| +||+|.+..++....
T Consensus 53 ~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~i~---------~~~pD-vI~~~~~~~~~~~~~ 106 (350)
T cd03785 53 TIPVGGLRRK-------G---------SLKKLKAPFKLLKGVLQARKILK---------KFKPD-VVVGFGGYVSGPVGL 106 (350)
T ss_pred EEEecCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHH---------hcCCC-EEEECCCCcchHHHH
Confidence 5543322111 0 01111111112223323323222 13699 888887655544443
Q ss_pred HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCH
Q 007873 246 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325 (586)
Q Consensus 246 l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~ 325 (586)
..+. .++|+++..|+... . .+.+..+..+|.|+++|+
T Consensus 107 ~a~~-------~~~p~v~~~~~~~~----------------------------------~--~~~~~~~~~~~~vi~~s~ 143 (350)
T cd03785 107 AAKL-------LGIPLVIHEQNAVP----------------------------------G--LANRLLARFADRVALSFP 143 (350)
T ss_pred HHHH-------hCCCEEEEcCCCCc----------------------------------c--HHHHHHHHhhCEEEEcch
Confidence 3333 47898876553211 0 111233556999999999
Q ss_pred HHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE
Q 007873 326 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 326 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i 405 (586)
...+.+. ..++.+|+||+|...+.+.. . +++++++. +.++|
T Consensus 144 ~~~~~~~--------------~~~~~~i~n~v~~~~~~~~~----------------------~-~~~~~~~~--~~~~i 184 (350)
T cd03785 144 ETAKYFP--------------KDKAVVTGNPVREEILALDR----------------------E-RARLGLRP--GKPTL 184 (350)
T ss_pred hhhhcCC--------------CCcEEEECCCCchHHhhhhh----------------------h-HHhcCCCC--CCeEE
Confidence 8776511 23899999999977664421 1 55666653 44788
Q ss_pred EEEecCccccCHH-HHHHHHhhcccCCeEE-EEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEc
Q 007873 406 GFIGRLEEQKGSD-ILAAAIPHFIKENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 483 (586)
Q Consensus 406 ~~iGrl~~~KG~d-~Ll~A~~~l~~~~v~l-vIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~P 483 (586)
++.|+....|+.+ .+++|+..+.++++++ +++|+|. .+.+++...++..++.+.+.. +...++|+.||+++.+
T Consensus 185 ~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~---~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~ 259 (350)
T cd03785 185 LVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD---LEEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISR 259 (350)
T ss_pred EEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc---HHHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEEC
Confidence 8888877777765 4568888887666774 4778874 244555554444567665544 5677899999999987
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCCcC--------cccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHHHhc
Q 007873 484 SRFEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATY 553 (586)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll~~~ 553 (586)
+- +++++|||++|+|+|+++.++ ..+.+.++.+|+++ ++. |+++|+++|.+++++
T Consensus 260 sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v----------~~~~~~~~~l~~~i~~ll~~- 324 (350)
T cd03785 260 AG----ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLI----------PQEELTPERLAAALLELLSD- 324 (350)
T ss_pred CC----HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEE----------ecCCCCHHHHHHHHHHHhcC-
Confidence 62 689999999999999987654 24667777899997 766 899999999999987
Q ss_pred CHHHHHHHHHHHHH--hcCCHHHHH
Q 007873 554 GTQALAEMMKNGMA--QDLSWKVSI 576 (586)
Q Consensus 554 ~~~~~~~~~~~~~~--~~fsw~~~a 576 (586)
++.+++|++++.. +.+.-++++
T Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~i~ 348 (350)
T cd03785 325 -PERLKAMAEAARSLARPDAAERIA 348 (350)
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888999998853 445544444
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.92 E-value=5.8e-23 Score=218.69 Aligned_cols=219 Identities=14% Similarity=0.123 Sum_probs=161.5
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
++++|.++++|+..++.+.+ +|++.+ ++.++.|.++.. |.+..+ +..++++
T Consensus 145 ~~~ad~i~~~s~~~~~~l~~---~gi~~~------ki~v~G~p~~~~-f~~~~~-------------------~~~~~~~ 195 (380)
T PRK13609 145 HREVDRYFVATDHVKKVLVD---IGVPPE------QVVETGIPIRSS-FELKIN-------------------PDIIYNK 195 (380)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCChh------HEEEECcccChH-HcCcCC-------------------HHHHHHH
Confidence 56899999999999999986 677655 677766555432 222111 3356788
Q ss_pred hCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHH
Q 007873 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 473 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~ 473 (586)
+|++.+. ..++++.|++...|+++.+++++.+. ++++++++|++.....+.++++....+.++.+.+.. +.+.++
T Consensus 196 ~~l~~~~-~~il~~~G~~~~~k~~~~li~~l~~~--~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~--~~~~~l 270 (380)
T PRK13609 196 YQLCPNK-KILLIMAGAHGVLGNVKELCQSLMSV--PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYV--ENIDEL 270 (380)
T ss_pred cCCCCCC-cEEEEEcCCCCCCcCHHHHHHHHhhC--CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEech--hhHHHH
Confidence 8987432 23556678899999999999998754 689998775443335667777766666567776544 346789
Q ss_pred HHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcCcc----cccccCcceEEEccccccccCCCCCCHHHHHHHHHH
Q 007873 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (586)
Q Consensus 474 l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~----e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ 548 (586)
++.||+++. ++.|++++|||+||+|+|+++ .+|.. +.+.+ +|+.+ ...|+++++++|.+
T Consensus 271 ~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~----------~~~~~~~l~~~i~~ 334 (380)
T PRK13609 271 FRVTSCMIT----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAV----------VIRDDEEVFAKTEA 334 (380)
T ss_pred HHhccEEEe----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEE----------EECCHHHHHHHHHH
Confidence 999999884 567999999999999999986 55532 23333 34443 45899999999999
Q ss_pred HHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHhc
Q 007873 549 ALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 549 ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~ 584 (586)
++++ ++.+++|++++. .+.++++.+++.+++..+
T Consensus 335 ll~~--~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 335 LLQD--DMKLLQMKEAMKSLYLPEPADHIVDDILAENH 370 (380)
T ss_pred HHCC--HHHHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 9998 888899998874 467899999999988654
No 77
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.90 E-value=2e-22 Score=230.60 Aligned_cols=292 Identities=17% Similarity=0.213 Sum_probs=203.5
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
-| +|..||+|..++|.+++... +++++.|.+|..++ ..+ |..+ | .
T Consensus 148 ~d-~vWvhDYhL~llp~~lR~~~------~~~~igfFlHiPFP-----s~e~fr~l--p--------------------~ 193 (797)
T PLN03063 148 GD-VVWCHDYHLMFLPQYLKEYN------NKMKVGWFLHTPFP-----SSEIYKTL--P--------------------S 193 (797)
T ss_pred CC-EEEEecchhhhHHHHHHHhC------CCCcEEEEecCCCC-----CHHHHhhC--C--------------------C
Confidence 36 99999999999999999875 68999999996543 111 1111 1 1
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcc--hhh---hhccCeeEecCCcccCCcCCCCccccccccCcccc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVEL--DNI---IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~--~~~---~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~ 379 (586)
...+-.++..+|.|-+.+..+++.+.+.+. .|++. ..+ -+..++.+||||+|+..|.+....
T Consensus 194 r~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~----------- 262 (797)
T PLN03063 194 RSELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCEL----------- 262 (797)
T ss_pred HHHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcC-----------
Confidence 234567788999999999999888775221 12211 001 122478999999999988654210
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CC----eEEEEEeC-----CC--hhhHH
Q 007873 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVLGT-----GK--KPMEK 446 (586)
Q Consensus 380 ~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~----v~lvIvG~-----g~--~~~~~ 446 (586)
.........+++.++ +.++|+++||+++.||++.+++|++.+.+ |+ +.|+.++. ++ ..+++
T Consensus 263 -~~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~ 336 (797)
T PLN03063 263 -PEVKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKS 336 (797)
T ss_pred -hhHHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHH
Confidence 000001123344433 45799999999999999999999999864 44 44554442 22 12444
Q ss_pred HHHHHHHHCCCc--------eEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCCcCccc
Q 007873 447 QLEQLEILYPEK--------ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLVD 513 (586)
Q Consensus 447 ~l~~l~~~~~~~--------v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~~e 513 (586)
+++++....+++ +.... .++.+++..+|+.||++++||..|++|++.+||||||+| +|+|..+|..+
T Consensus 337 ~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~ 416 (797)
T PLN03063 337 QVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQ 416 (797)
T ss_pred HHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchh
Confidence 555554222211 11111 336688889999999999999999999999999999999 99999999988
Q ss_pred ccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 514 TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 514 ~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
.+ +.+|+++ +|.|++++|++|.++|+.. ++.++++.+.. ....+||..-++.+++.+
T Consensus 417 ~l--~~~allV----------nP~D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l 475 (797)
T PLN03063 417 SL--GAGALLV----------NPWNITEVSSAIKEALNMS-DEERETRHRHNFQYVKTHSAQKWADDFMSEL 475 (797)
T ss_pred hh--cCCeEEE----------CCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 86 4479997 9999999999999999953 44444444433 357899999998887643
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.90 E-value=1.1e-21 Score=209.06 Aligned_cols=216 Identities=16% Similarity=0.130 Sum_probs=162.9
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
.+.+|.++++|+..++++.+ +|++.+ ++.++++++|...+.+..+ +.+++++
T Consensus 148 ~~~~d~~~~~s~~~~~~l~~---~g~~~~------ki~v~g~~v~~~f~~~~~~-------------------~~~~r~~ 199 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRALK---RGLEPS------QIRVYGLPIRPSFARAVRP-------------------KDELRRE 199 (382)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCCHH------HEEEECcccCHhhccCCCC-------------------HHHHHHH
Confidence 56899999999999999886 677755 8899999988765443321 5678899
Q ss_pred hCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcc------cCCeE-EEEEeCCChhhHHHHHHHHHHCCCceEEEeccC
Q 007873 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI------KENVQ-IIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 466 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~------~~~v~-lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~ 466 (586)
+|++. +.++|+++|+....|++..+++++..+. .++++ ++++|++. ...+.+++... ..++.+.+..+
T Consensus 200 ~gl~~--~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-~~~~~L~~~~~--~~~v~~~G~~~ 274 (382)
T PLN02605 200 LGMDE--DLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-KLQSKLESRDW--KIPVKVRGFVT 274 (382)
T ss_pred cCCCC--CCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-HHHHHHHhhcc--cCCeEEEeccc
Confidence 99975 4489999999999999999999998753 35676 56777664 24455555422 23465555443
Q ss_pred hHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC------cCcccccccCcceEEEccccccccCCCCCCHH
Q 007873 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST------GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVA 540 (586)
Q Consensus 467 ~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~------gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~ 540 (586)
+++++|+.||++|.++ .|++++|||+||+|+|+++. |+. +.+.++..|+. ..|++
T Consensus 275 --~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~------------~~~~~ 335 (382)
T PLN02605 275 --NMEEWMGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAF------------SESPK 335 (382)
T ss_pred --cHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceee------------cCCHH
Confidence 5788999999999855 58999999999999999983 334 44455566764 38999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 007873 541 AVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEE 582 (586)
Q Consensus 541 ~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~ 582 (586)
+++++|.+++++. ++.+++|++++. ....+++.+++.+.+.
T Consensus 336 ~la~~i~~ll~~~-~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 336 EIARIVAEWFGDK-SDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999999999862 567888988885 4567888888777653
No 79
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.90 E-value=2.5e-21 Score=205.67 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=161.5
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHH
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
.+++..++.+|.|+++|+.+.+.+.. ++ .++.+||||+|.+.|.+.... .
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~---~~---------~~i~~i~ngvd~~~f~~~~~~------------------~ 194 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRR---LN---------PNVVLVPNGVDYEHFAAARDP------------------P 194 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhh---CC---------CCEEEcccccCHHHhhccccc------------------C
Confidence 56788899999999999999988775 33 279999999999998765321 0
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccCh
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (586)
...+... ..+.++|+|+|++.+.++++.+.+++... ++++|+|+|.++... ....+. ...|+.+.+..+.
T Consensus 195 ~~~~~~~----~~~~~~i~y~G~l~~~~d~~ll~~la~~~--p~~~~vliG~~~~~~--~~~~~~--~~~nV~~~G~~~~ 264 (373)
T cd04950 195 PPPADLA----ALPRPVIGYYGAIAEWLDLELLEALAKAR--PDWSFVLIGPVDVSI--DPSALL--RLPNVHYLGPKPY 264 (373)
T ss_pred CChhHHh----cCCCCEEEEEeccccccCHHHHHHHHHHC--CCCEEEEECCCcCcc--ChhHhc--cCCCEEEeCCCCH
Confidence 0001111 12458999999999988888777666543 789999999983111 112221 1247998888888
Q ss_pred HHHHHHHHhccEEEEcCCC-----CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHH
Q 007873 468 PLAHMIIAGADFILIPSRF-----EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAV 542 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~-----E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~l 542 (586)
++++.+++.||++++|+.. +.+|++++||||||+|||+|+.+.+. ..+..+++ .++|++++
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~---~~~~~~~~-----------~~~d~~~~ 330 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVR---RYEDEVVL-----------IADDPEEF 330 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHH---hhcCcEEE-----------eCCCHHHH
Confidence 9999999999999999863 36899999999999999999865544 33333444 56799999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007873 543 STTVRRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 543 a~~I~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~ 582 (586)
+++|.+++.+..++..++. .+ .++.+||+..++++++.
T Consensus 331 ~~ai~~~l~~~~~~~~~~~-~~-~~~~~sW~~~a~~~~~~ 368 (373)
T cd04950 331 VAAIEKALLEDGPARERRR-LR-LAAQNSWDARAAEMLEA 368 (373)
T ss_pred HHHHHHHHhcCCchHHHHH-HH-HHHHCCHHHHHHHHHHH
Confidence 9999998776433333322 22 67889999999999854
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.90 E-value=2.6e-22 Score=188.99 Aligned_cols=165 Identities=27% Similarity=0.436 Sum_probs=142.6
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcc---cCCeEEEEEeCCChhhHHHHHHHHHHCC--CceEE
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI---KENVQIIVLGTGKKPMEKQLEQLEILYP--EKARG 461 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~---~~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~ 461 (586)
++.++...+.+. +.++|+|+||+.+.||++.+++|+..+. .++++++|+|++. ....+..+...++ .++.+
T Consensus 2 ~~~~~~~~~~~~--~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~i~~ 77 (172)
T PF00534_consen 2 KDKLREKLKIPD--KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE--YKKELKNLIEKLNLKENIIF 77 (172)
T ss_dssp HHHHHHHTTT-T--TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC--HHHHHHHHHHHTTCGTTEEE
T ss_pred hHHHHHHcCCCC--CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc--cccccccccccccccccccc
Confidence 566677777654 4589999999999999999999999996 4799999999776 5555666666544 47888
Q ss_pred EeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHH
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 541 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~ 541 (586)
.+..+.+++..+++.||++++||..|++|++++|||++|+|||+++.|+..|++.++.+|+++ ++.|+++
T Consensus 78 ~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~----------~~~~~~~ 147 (172)
T PF00534_consen 78 LGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLF----------DPNDIEE 147 (172)
T ss_dssp EESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEE----------STTSHHH
T ss_pred cccccccccccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEe----------CCCCHHH
Confidence 888888889999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007873 542 VSTTVRRALATYGTQALAEMMKNGMA 567 (586)
Q Consensus 542 la~~I~~ll~~~~~~~~~~~~~~~~~ 567 (586)
++++|.+++++ ++.++.|++++.+
T Consensus 148 l~~~i~~~l~~--~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 148 LADAIEKLLND--PELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--HHHHHHHHHHhcC
Confidence 99999999999 7889999998764
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=3.6e-21 Score=205.69 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=157.8
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
...+|.+++.|+..++.+.+ .|++.+ ++.++.|+++.....+. .+.+++++
T Consensus 145 ~~~~d~~~v~s~~~~~~l~~---~gi~~~------ki~v~GiPv~~~f~~~~--------------------~~~~~~~~ 195 (391)
T PRK13608 145 TPYSTRYYVATKETKQDFID---VGIDPS------TVKVTGIPIDNKFETPI--------------------DQKQWLID 195 (391)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCCHH------HEEEECeecChHhcccc--------------------cHHHHHHH
Confidence 45799999999999999986 677655 78887777764332221 14466788
Q ss_pred hCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHH
Q 007873 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 473 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~ 473 (586)
+|++.+. ..++++.|+++..||++.+++++.+. .+++++++++++.+...+.+++... ...++...+ |. +.++++
T Consensus 196 ~~l~~~~-~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G~~~~l~~~l~~~~~-~~~~v~~~G-~~-~~~~~~ 270 (391)
T PRK13608 196 NNLDPDK-QTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICGKSKELKRSLTAKFK-SNENVLILG-YT-KHMNEW 270 (391)
T ss_pred cCCCCCC-CEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcCCCHHHHHHHHHHhc-cCCCeEEEe-cc-chHHHH
Confidence 8987542 24566789999999999999986432 2678987664433223344444322 223565554 33 457789
Q ss_pred HHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHH
Q 007873 474 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (586)
Q Consensus 474 l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ 548 (586)
|+.||++|. ++.|++++|||++|+|+|+++ .+| ..+++.+.+.|+. ..|++++++.|.+
T Consensus 271 ~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~------------~~~~~~l~~~i~~ 334 (391)
T PRK13608 271 MASSQLMIT----KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI------------ADTPEEAIKIVAS 334 (391)
T ss_pred HHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE------------eCCHHHHHHHHHH
Confidence 999999996 467999999999999999996 343 2223445556664 4699999999999
Q ss_pred HHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHhc
Q 007873 549 ALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 549 ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~ 584 (586)
++++ ++.+++|++++. .+.++++.+++++++..+
T Consensus 335 ll~~--~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 335 LTNG--NEQLTNMISTMEQDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred HhcC--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 9998 888999999985 467999999999987553
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.89 E-value=4.3e-22 Score=227.96 Aligned_cols=291 Identities=17% Similarity=0.225 Sum_probs=202.3
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcch
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (586)
-| +|..||+|..++|.+++... ++.++.|.+|-..+... .|.. +| ..
T Consensus 134 ~d-~vwvhDYhl~l~p~~lr~~~------~~~~igfFlH~pfP~~~----~f~~--lp--------------------~~ 180 (726)
T PRK14501 134 GD-VVWVHDYQLMLLPAMLRERL------PDARIGFFLHIPFPSFE----VFRL--LP--------------------WR 180 (726)
T ss_pred CC-EEEEeCchhhhHHHHHHhhC------CCCcEEEEeeCCCCChH----HHhh--CC--------------------Ch
Confidence 36 99999999999999998774 68899999996544221 1111 11 12
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcch--hh---hhccCeeEecCCcccCCcCCCCccccccccCccccc
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD--NI---IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 380 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~~--~~---~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~ 380 (586)
..+-.++..+|.|-+.+..+++.+.+... .|.+-. .+ =+..++.++|||+|++.|.+....
T Consensus 181 ~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~------------ 248 (726)
T PRK14501 181 EEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQD------------ 248 (726)
T ss_pred HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcC------------
Confidence 34566788999999999998877664221 121100 00 012368999999999999764311
Q ss_pred cccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C----CeEEEEEeCCC----h---hhHHH
Q 007873 381 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK----K---PMEKQ 447 (586)
Q Consensus 381 ~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~----~v~lvIvG~g~----~---~~~~~ 447 (586)
.........+++.+ .+.++|+++||+++.||++.+++|++++.+ + +++|+++|.+. + .++++
T Consensus 249 ~~~~~~~~~lr~~~-----~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~ 323 (726)
T PRK14501 249 PEVQEEIRRLRQDL-----RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKRE 323 (726)
T ss_pred chHHHHHHHHHHHc-----CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHH
Confidence 00001122344443 245799999999999999999999999864 4 47898887431 1 34455
Q ss_pred HHHHHHHCCC--------ceE-EEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHc-----CCcEEEcCCcCccc
Q 007873 448 LEQLEILYPE--------KAR-GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRY-----GTVPIVASTGGLVD 513 (586)
Q Consensus 448 l~~l~~~~~~--------~v~-~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~-----G~PvI~s~~gg~~e 513 (586)
++++..+.++ .+. +...++.+++..+|+.||++++||..|+||++++|||+| |.||++...|+..+
T Consensus 324 ~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~ 403 (726)
T PRK14501 324 IDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE 403 (726)
T ss_pred HHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHH
Confidence 5555433221 122 333457788999999999999999999999999999999 55677777888888
Q ss_pred ccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 514 TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 514 ~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
++ +|+++ +|.|++++|++|.++++++..+....+ +++ ....|||+..++++++.+
T Consensus 404 l~----~~llv----------~P~d~~~la~ai~~~l~~~~~e~~~r~-~~~~~~v~~~~~~~w~~~~l~~l 460 (726)
T PRK14501 404 LA----EALLV----------NPNDIEGIAAAIKRALEMPEEEQRERM-QAMQERLRRYDVHKWASDFLDEL 460 (726)
T ss_pred hC----cCeEE----------CCCCHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHH
Confidence 75 38887 999999999999999986323333222 333 247899999999988743
No 83
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.88 E-value=3.7e-21 Score=207.99 Aligned_cols=213 Identities=17% Similarity=0.151 Sum_probs=154.4
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHH
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
.+++..++.+|.|+++|+..++.+.+ .|++ +. +.+++|+ +.+.+.+.. .....
T Consensus 170 ~~~r~~~~~~d~ii~~S~~~~~~l~~---~g~~------~~-i~vi~n~-~~d~~~~~~----------------~~~~~ 222 (425)
T PRK05749 170 RFYRLLFKNIDLVLAQSEEDAERFLA---LGAK------NE-VTVTGNL-KFDIEVPPE----------------LAARA 222 (425)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHH---cCCC------CC-cEecccc-cccCCCChh----------------hHHHH
Confidence 34566788899999999999999986 5654 22 7788884 333222211 01123
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCc-eEEEe-
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEK-ARGVA- 463 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~-v~~~~- 463 (586)
..++++++ + +.+++++.|+. .|+.+.+++|++++.+ ++++|+|+|.|+.. .+.++++..+.+.. +.+..
T Consensus 223 ~~~r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~ 295 (425)
T PRK05749 223 ATLRRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQG 295 (425)
T ss_pred HHHHHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCC
Confidence 45677776 3 44788888864 6889999999999765 79999999998732 24566666655421 11111
Q ss_pred -----------ccChHHHHHHHHhccEEEE-cCCCCCCcHHHHHHHHcCCcEEEcCC-cCcccccccC-cceEEEccccc
Q 007873 464 -----------KFNIPLAHMIIAGADFILI-PSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEG-FTGFQMGSFSV 529 (586)
Q Consensus 464 -----------~~~~~~~~~~l~~aDi~l~-PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g-~~G~~~~~~~~ 529 (586)
.-...++..+|+.||++++ +|..|++|.+++|||+||+|||+++. ++..|+++.. .+|+++
T Consensus 296 ~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~----- 370 (425)
T PRK05749 296 EPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAI----- 370 (425)
T ss_pred CCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeE-----
Confidence 0123467789999999655 67779999999999999999999864 6666666542 467776
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007873 530 DCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 566 (586)
Q Consensus 530 ~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 566 (586)
.++|+++|+++|.+++++ ++.+++|++++.
T Consensus 371 -----~~~d~~~La~~l~~ll~~--~~~~~~m~~~a~ 400 (425)
T PRK05749 371 -----QVEDAEDLAKAVTYLLTD--PDARQAYGEAGV 400 (425)
T ss_pred -----EECCHHHHHHHHHHHhcC--HHHHHHHHHHHH
Confidence 789999999999999998 888899999885
No 84
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.87 E-value=1e-20 Score=199.78 Aligned_cols=236 Identities=18% Similarity=0.174 Sum_probs=174.0
Q ss_pred HhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 313 ~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
....+|.+++.|...+..+... =+.+ ....+++.+-++|.+-+.+..- +.+...+...+.
T Consensus 206 ~~~~~~~~~~ns~~~~~~f~~~---~~~L----~~~d~~~~y~ei~~s~~~~~~~-------------~~~~~~~~~~r~ 265 (495)
T KOG0853|consen 206 TTGLAWKILVNSYFTKRQFKAT---FVSL----SNSDITSTYPEIDGSWFTYGQY-------------ESHLELRLPVRL 265 (495)
T ss_pred hhhccceEecchhhhhhhhhhh---hhhc----CCCCcceeeccccchhcccccc-------------ccchhcccccce
Confidence 3457889999888888777641 1111 1235888888888777665210 111122222333
Q ss_pred HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc-------CCeEEEEEeCC--------ChhhHHHHHHHHHHCC-
Q 007873 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-------ENVQIIVLGTG--------KKPMEKQLEQLEILYP- 456 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~-------~~v~lvIvG~g--------~~~~~~~l~~l~~~~~- 456 (586)
+.+.. .....+..+-++++.||++++++|+.++.. ++.+++++|+. ...+.+++.++.++++
T Consensus 266 ~~~v~--~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l 343 (495)
T KOG0853|consen 266 YRGVS--GIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDL 343 (495)
T ss_pred eeeec--ccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCc
Confidence 33433 224678899999999999999999998865 35788888842 1357778888888874
Q ss_pred -CceEEE-eccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCC
Q 007873 457 -EKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 534 (586)
Q Consensus 457 -~~v~~~-~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v 534 (586)
++.+.+ ...+......+++.+...+.....|+||++.+|||+||+|||+++.||..|+|.++.||+++
T Consensus 344 ~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~---------- 413 (495)
T KOG0853|consen 344 LGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLI---------- 413 (495)
T ss_pred cCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceee----------
Confidence 234434 33345555557777777766666699999999999999999999999999999999999998
Q ss_pred CCCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 535 DPVDVA---AVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 535 ~~~d~~---~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
+| +.+ .+|+++.++.++ ++.+.+|++++. .+.|||+.+.+++....
T Consensus 414 dp-~~e~~~~~a~~~~kl~~~--p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~ 465 (495)
T KOG0853|consen 414 DP-GQEAVAELADALLKLRRD--PELWARMGKNGLKRVKEMFSWQHYSERIASVL 465 (495)
T ss_pred CC-chHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 77 666 699999999999 899999999994 56799999999987653
No 85
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.86 E-value=4.3e-20 Score=179.70 Aligned_cols=118 Identities=28% Similarity=0.443 Sum_probs=96.7
Q ss_pred EEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHHHHHhccEEEEc
Q 007873 407 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIAGADFILIP 483 (586)
Q Consensus 407 ~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~~l~~aDi~l~P 483 (586)
|+|++.+.||++.+++|+..+.+ ++++++++|.+.................++...+.+ ..+....+++.||++++|
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~ 188 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLP 188 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEec
Confidence 99999999999999999999976 599999999987422222111122234578777776 455666677779999999
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEE
Q 007873 484 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQM 524 (586)
Q Consensus 484 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~ 524 (586)
|..|++|++++|||++|+|+|+|+.++..|++.++.+|+++
T Consensus 189 ~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 189 SLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred ccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999999999999999999999999999999999999863
No 86
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.85 E-value=1.8e-19 Score=194.00 Aligned_cols=291 Identities=16% Similarity=0.150 Sum_probs=207.4
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
+|-+|-.||+|..++|.+++... ++.++-|.+|-..+ ..+ |..+ | .
T Consensus 132 ~~d~vWVhDYhL~llp~~LR~~~------~~~~IgfFlHiPFP-----s~eifr~L--P--------------------~ 178 (487)
T TIGR02398 132 EGATVWVHDYNLWLVPGYIRQLR------PDLKIAFFHHTPFP-----SADVFNIL--P--------------------W 178 (487)
T ss_pred CCCEEEEecchhhHHHHHHHHhC------CCCeEEEEeeCCCC-----ChHHHhhC--C--------------------c
Confidence 43399999999999999998874 68899999995433 211 1111 1 2
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcchh-------h-------------------hhccCeeEecCCcc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN-------I-------------------IRKTGIKGIVNGMD 358 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~~~-------~-------------------~~~~~i~vI~ngvd 358 (586)
...+-.++..+|.|=+.+..+++.+.+.+. .|.+... . =+...+.++|.|||
T Consensus 179 r~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID 258 (487)
T TIGR02398 179 REQIIGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTD 258 (487)
T ss_pred hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEec
Confidence 244567788999999999999888775221 1221100 0 01235899999999
Q ss_pred cCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C----Ce
Q 007873 359 VQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NV 432 (586)
Q Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~----~v 432 (586)
++.|.+.... ..-......++++++ +.++|++++|+++.||+...++|++++.+ | ++
T Consensus 259 ~~~f~~~~~~------------~~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv 321 (487)
T TIGR02398 259 PERIRSALAA------------ASIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKV 321 (487)
T ss_pred HHHHHHHhcC------------chHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHHHhCccccCce
Confidence 9998654211 011122445777776 45799999999999999999999999855 4 58
Q ss_pred EEEEEeCCC-------hhhHHHHHHHHHHCCCc---------eEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHH
Q 007873 433 QIIVLGTGK-------KPMEKQLEQLEILYPEK---------ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHA 496 (586)
Q Consensus 433 ~lvIvG~g~-------~~~~~~l~~l~~~~~~~---------v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEA 496 (586)
.|+++|.+. ..+.+++++++.+.+++ +.+...++.+++..+|+.||++++||..||++++..|+
T Consensus 322 ~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Ey 401 (487)
T TIGR02398 322 TLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEY 401 (487)
T ss_pred EEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhH
Confidence 999998764 23566777766654221 23334447788889999999999999999999999999
Q ss_pred HHcCC----cEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhcCC
Q 007873 497 MRYGT----VPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLS 571 (586)
Q Consensus 497 ma~G~----PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fs 571 (586)
++|+. |+|.|..+|..+.+. .++++ +|.|++++|++|.++|+.+..+..+++.+.- ....+|
T Consensus 402 va~~~~~~GvLILSefaGaa~~l~---~AllV----------NP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d 468 (487)
T TIGR02398 402 VAAQGLLDGVLVLSEFAGAAVELK---GALLT----------NPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYD 468 (487)
T ss_pred HhhhcCCCCCEEEeccccchhhcC---CCEEE----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCC
Confidence 99998 999999999987774 46776 9999999999999999985434333333321 234455
Q ss_pred HHHHHHHHHH
Q 007873 572 WKVSIGTVQE 581 (586)
Q Consensus 572 w~~~a~~~~~ 581 (586)
-..=++.+++
T Consensus 469 ~~~W~~~fl~ 478 (487)
T TIGR02398 469 VQRWADEFLA 478 (487)
T ss_pred HHHHHHHHHH
Confidence 5554555544
No 87
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.81 E-value=1.4e-17 Score=174.10 Aligned_cols=208 Identities=17% Similarity=0.115 Sum_probs=150.9
Q ss_pred CceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccC
Q 007873 258 SAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDK 337 (586)
Q Consensus 258 ~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~ 337 (586)
++|+|+++|++.+. ++.. ......+++..++.+|.|+++|+.+++.+.+ +
T Consensus 92 ~~k~i~~ihD~~~~-~~~~--------------------------~~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~---~ 141 (333)
T PRK09814 92 QVKIIILIHDIEPL-RFDS--------------------------NYYLMKEEIDMLNLADVLIVHSKKMKDRLVE---E 141 (333)
T ss_pred CCEEEEEECCcHHH-hccc--------------------------cchhhHHHHHHHHhCCEEEECCHHHHHHHHH---c
Confidence 79999999987652 1100 0011356778899999999999999999986 5
Q ss_pred CCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCH
Q 007873 338 GVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGS 417 (586)
Q Consensus 338 g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~ 417 (586)
|++.+ ++.+++++.+.....+.. ..+..+.|+|+|++....++
T Consensus 142 g~~~~------~i~~~~~~~~~~~~~~~~-------------------------------~~~~~~~i~yaG~l~k~~~l 184 (333)
T PRK09814 142 GLTTD------KIIVQGIFDYLNDIELVK-------------------------------TPSFQKKINFAGNLEKSPFL 184 (333)
T ss_pred CCCcC------ceEecccccccccccccc-------------------------------cccCCceEEEecChhhchHH
Confidence 66433 666666554331111100 11234689999999954332
Q ss_pred HHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCC-----------
Q 007873 418 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF----------- 486 (586)
Q Consensus 418 d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~----------- 486 (586)
.. ..++++|+|+|+|+... ....++.+.+.++.+++..+|+. |+.+++...
T Consensus 185 ~~--------~~~~~~l~i~G~g~~~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~ 246 (333)
T PRK09814 185 KN--------WSQGIKLTVFGPNPEDL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYK 246 (333)
T ss_pred Hh--------cCCCCeEEEECCCcccc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhh
Confidence 11 23679999999997321 23457999999999999988988 776665421
Q ss_pred CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007873 487 EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 566 (586)
Q Consensus 487 E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 566 (586)
-.+|.++.|+||||+|||+++.+++.|+|+++.+|+++ + +.+++++.+.++. ++.+.+|++|+.
T Consensus 247 ~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v----------~--~~~el~~~l~~~~----~~~~~~m~~n~~ 310 (333)
T PRK09814 247 YNNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFVV----------D--SLEELPEIIDNIT----EEEYQEMVENVK 310 (333)
T ss_pred ccchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEEe----------C--CHHHHHHHHHhcC----HHHHHHHHHHHH
Confidence 25899999999999999999999999999999999997 4 7889999998853 467888999884
No 88
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.80 E-value=6.7e-18 Score=180.69 Aligned_cols=436 Identities=18% Similarity=0.238 Sum_probs=228.8
Q ss_pred EeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEecCCCccc----cCCcc-eEEE---EEeCCeeeEEEEEEEEeC
Q 007873 90 VGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRYDQYKD----AWDTD-VVIE---LKVGDKIEKVRFFHCHKR 160 (586)
Q Consensus 90 v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~ 160 (586)
++.++. .+.||+-+++..=|+.+.+. |-+..++.|...+... ..+.. .... ......--.+++.+..++
T Consensus 2 ~sWEVc--NKVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~Gl~v~~GRWlI~ 79 (633)
T PF05693_consen 2 VSWEVC--NKVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEGLKVRYGRWLIP 79 (633)
T ss_dssp EETTTT--S-SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT-EEEEEEESST
T ss_pred chhhhc--cccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCCCeEEEeceeEC
Confidence 344544 37999999999988887755 8899999986433210 00000 0000 000001124667777788
Q ss_pred CceEEEE-cCccc-------cccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEE
Q 007873 161 GVDRVFV-DHPWF-------LAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVF 232 (586)
Q Consensus 161 gv~~~~v-~~~~~-------~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii 232 (586)
|.+++.+ |...+ +...|...| +-++..+.||.+. ..|...+..+++.+...... ++.||.
T Consensus 80 G~P~vIL~D~~s~~~~ldeik~~lW~~~g--IdS~~~~~dynea-~~Fgyava~fi~~f~~~~~~---------~~~Via 147 (633)
T PF05693_consen 80 GRPIVILFDFGSFFWKLDEIKGELWELFG--IDSPHGDGDYNEA-VMFGYAVAWFIEEFYKFYEE---------KPKVIA 147 (633)
T ss_dssp T--EEEEEEGGGGGGGHHHHHHHHHHHH-------TT-HHHHHH-HHHHHHHHHHHHHHHHH-S----------SEEEEE
T ss_pred CcCeEEEEeCchHHHHHHHHHHHHHHHcC--CCCCCCCcchhHH-HHHHHHHHHHHHHHHHhhcC---------CCcEEE
Confidence 8886644 43332 233564333 2222222222222 22333444444444333221 478899
Q ss_pred EecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccC-cc------cccccCCChhhccccccccCCCCCcCCc
Q 007873 233 VANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFA-FE------DFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (586)
Q Consensus 233 ~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (586)
|+|+|+++...+++++.. ..+.+|||.|.... ||+- .+ .+...+...+... .-...
T Consensus 148 HfHEWmaG~gll~lr~~~------~~VaTvFTTHAT~l-GR~l~~~~~~~Y~~L~~~~~d~eA~~----------~~i~~ 210 (633)
T PF05693_consen 148 HFHEWMAGVGLLYLRKRK------PDVATVFTTHATLL-GRYLAANNKDFYNNLDKFNGDQEAGE----------RNIYH 210 (633)
T ss_dssp EEESGGGTTHHHHHHHTT-------SCEEEEEESS-HH-HHHHTTTSS-TTTSGTTS-HHHHHHH----------TT-HH
T ss_pred EechHhHhHHHHHHhccC------CCeeEEEEecccch-hhHhhcCCCcHHHHhhccCccccccC----------ccchH
Confidence 999999999888888765 68999999997654 4321 01 1111111111100 00112
Q ss_pred chhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHH
Q 007873 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (586)
Q Consensus 306 ~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (586)
+...++.+...||++.|||+-++.+-.. ++.++.=.|+|||+++..|.....- ..-...
T Consensus 211 k~~iEraaA~~AdvFTTVSeITa~Ea~~----------LL~r~pDvV~pNGl~v~~~~~~~ef-----------qnl~~~ 269 (633)
T PF05693_consen 211 KHSIERAAAHYADVFTTVSEITAKEAEH----------LLKRKPDVVTPNGLNVDKFPALHEF-----------QNLHAK 269 (633)
T ss_dssp HHHHHHHHHHHSSEEEESSHHHHHHHHH----------HHSS--SEE----B-GGGTSSTTHH-----------HHHHHH
T ss_pred HHHHHHHHHHhcCeeeehhhhHHHHHHH----------HhCCCCCEEcCCCccccccccchHH-----------HHHHHH
Confidence 4566788889999999999999888663 2223344788999999877654310 011223
Q ss_pred HHHHHH----HH-hCC-CCC-CCCcEEEEEecCc-cccCHHHHHHHHhhccc------CC---eEEEEEeCCC-------
Q 007873 386 LKEALQ----AE-VGL-PVD-RNIPVIGFIGRLE-EQKGSDILAAAIPHFIK------EN---VQIIVLGTGK------- 441 (586)
Q Consensus 386 ~~~~l~----~~-~gl-~~~-~~~~~i~~iGrl~-~~KG~d~Ll~A~~~l~~------~~---v~lvIvG~g~------- 441 (586)
.|+.++ .. +|- .-+ ++...|..+||.+ ..||+|.+|||+.+|.. .+ +-|+|+=...
T Consensus 270 ~k~ki~~fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~ 349 (633)
T PF05693_consen 270 AKEKIHEFVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVES 349 (633)
T ss_dssp HHHHHHHHHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHH
T ss_pred HHHHHHHHHHHHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHH
Confidence 344333 22 231 222 2456678889998 69999999999999853 23 3355543321
Q ss_pred -------hhhHHHHHHHHH-------------------------------------------------------------
Q 007873 442 -------KPMEKQLEQLEI------------------------------------------------------------- 453 (586)
Q Consensus 442 -------~~~~~~l~~l~~------------------------------------------------------------- 453 (586)
+..++.+.++.+
T Consensus 350 l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~ 429 (633)
T PF05693_consen 350 LKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNM 429 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHH
Confidence 001100000000
Q ss_pred --H------CCC--ceEEEeccCh-------HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccc
Q 007873 454 --L------YPE--KARGVAKFNI-------PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 516 (586)
Q Consensus 454 --~------~~~--~v~~~~~~~~-------~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~ 516 (586)
+ ..+ ++.++..|.. -...+++.+||+.|+||++||+|.+.+|+.++|+|.|+|+..|+...+.
T Consensus 430 irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~ 509 (633)
T PF05693_consen 430 IRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQ 509 (633)
T ss_dssp HHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHH
T ss_pred HHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHH
Confidence 0 011 3555555521 1234699999999999999999999999999999999999988765554
Q ss_pred c-----CcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHH--HHhcCCHHHHHHHHHHHhc
Q 007873 517 E-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY---GTQALAEMMKNG--MAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 517 ~-----g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~---~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~~ 584 (586)
+ ...|+.+ .--...+.++.++.|.+.+..+ .+.++..++.++ +++.++|+.+...|.+..+
T Consensus 510 ~~~~~~~~~GV~V-------vdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~ 580 (633)
T PF05693_consen 510 EHIEDPEEYGVYV-------VDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYD 580 (633)
T ss_dssp TTS-HHGGGTEEE-------E-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHH
T ss_pred HhhccCcCCcEEE-------EeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 3456655 1112344666666666655443 133444444444 5789999999999988654
No 89
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.79 E-value=4.4e-17 Score=172.09 Aligned_cols=200 Identities=18% Similarity=0.177 Sum_probs=140.8
Q ss_pred HhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHH
Q 007873 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 391 (586)
Q Consensus 313 ~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (586)
..+.+|.++++|+..++.+.+ +|++.+ ++.+++|++ |...+.+...+ ....+
T Consensus 138 ~~~~ad~~~~~s~~~~~~l~~---~G~~~~------kI~vign~v~d~~~~~~~~~~------------------~~~~~ 190 (363)
T cd03786 138 IDKLSDLHFAPTEEARRNLLQ---EGEPPE------RIFVVGNTMIDALLRLLELAK------------------KELIL 190 (363)
T ss_pred HHHHhhhccCCCHHHHHHHHH---cCCCcc------cEEEECchHHHHHHHHHHhhc------------------cchhh
Confidence 346789999999999999886 677755 899999985 54333221110 11224
Q ss_pred HHhCCCCCCCCcEEEEEecCcc---ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHC---CCceEEEecc
Q 007873 392 AEVGLPVDRNIPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY---PEKARGVAKF 465 (586)
Q Consensus 392 ~~~gl~~~~~~~~i~~iGrl~~---~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~---~~~v~~~~~~ 465 (586)
+.++++. +..++++.||... .||++.+++|+..+.+.++++++.|.+. ..+.+++...++ ..++.+....
T Consensus 191 ~~~~~~~--~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~ 266 (363)
T cd03786 191 ELLGLLP--KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR--TRPRIREAGLEFLGHHPNVLLISPL 266 (363)
T ss_pred hhcccCC--CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC--hHHHHHHHHHhhccCCCCEEEECCc
Confidence 5667753 3367788999875 7999999999999864457777766655 344555554444 2456665544
Q ss_pred ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC-cCcccccccCcceEEEccccccccCCCCCCHHHHHH
Q 007873 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVST 544 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~ 544 (586)
...++..+++.||++|.||- | ++.|||++|+|+|+++. +...+.+++|. ++. ...|++++++
T Consensus 267 ~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g~-~~~-----------~~~~~~~i~~ 329 (363)
T cd03786 267 GYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRDRTERPETVESGT-NVL-----------VGTDPEAILA 329 (363)
T ss_pred CHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCCCCccchhhheee-EEe-----------cCCCHHHHHH
Confidence 55677889999999999984 4 57999999999999974 44667766543 332 2347999999
Q ss_pred HHHHHHHhcCHHHHHHHH
Q 007873 545 TVRRALATYGTQALAEMM 562 (586)
Q Consensus 545 ~I~~ll~~~~~~~~~~~~ 562 (586)
+|.+++++ +..+..|.
T Consensus 330 ~i~~ll~~--~~~~~~~~ 345 (363)
T cd03786 330 AIEKLLSD--EFAYSLMS 345 (363)
T ss_pred HHHHHhcC--chhhhcCC
Confidence 99999987 55555553
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.79 E-value=2.1e-17 Score=175.88 Aligned_cols=197 Identities=17% Similarity=0.100 Sum_probs=137.0
Q ss_pred HhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 313 ~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
..+.+|.+++.|+..++.+.+ +|+ ++.++.|.+..... +.. .+..+++
T Consensus 131 ~~~~~d~i~~~~~~~~~~~~~---~g~---------~~~~~G~p~~~~~~-~~~-------------------~~~~~~~ 178 (380)
T PRK00025 131 IAKATDHVLALFPFEAAFYDK---LGV---------PVTFVGHPLADAIP-LLP-------------------DRAAARA 178 (380)
T ss_pred HHHHHhhheeCCccCHHHHHh---cCC---------CeEEECcCHHHhcc-ccc-------------------ChHHHHH
Confidence 466789999999988888764 333 24444454432211 100 1445677
Q ss_pred HhCCCCCCCCcEE-EEEe-cCccc-cCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHC-CCceEEEeccC
Q 007873 393 EVGLPVDRNIPVI-GFIG-RLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY-PEKARGVAKFN 466 (586)
Q Consensus 393 ~~gl~~~~~~~~i-~~iG-rl~~~-KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~-~~~v~~~~~~~ 466 (586)
+++++.+ .+++ ++.| |..+. ++++.+++|++.+.+ ++++++++|.+.. ..+.++++..++ +.++.. +.
T Consensus 179 ~l~~~~~--~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~v~~---~~ 252 (380)
T PRK00025 179 RLGLDPD--ARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-RREQIEEALAEYAGLEVTL---LD 252 (380)
T ss_pred HcCCCCC--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh-hHHHHHHHHhhcCCCCeEE---Ec
Confidence 8888643 3554 4445 44444 457999999998864 6899999876332 455566665554 323322 22
Q ss_pred hHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEc-----------------CCcCcccccccCc--ceEEEccc
Q 007873 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-----------------STGGLVDTVEEGF--TGFQMGSF 527 (586)
Q Consensus 467 ~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s-----------------~~gg~~e~v~~g~--~G~~~~~~ 527 (586)
+++..+|+.||+++.+| |.+.+|||++|+|+|++ +.+++++++.++. .+++.
T Consensus 253 -~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--- 323 (380)
T PRK00025 253 -GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQ--- 323 (380)
T ss_pred -ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcC---
Confidence 45678999999999987 88999999999999987 4566777777653 44554
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007873 528 SVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG 565 (586)
Q Consensus 528 ~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~ 565 (586)
+..|++++++.+.++++| ++.+++|++++
T Consensus 324 -------~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~ 352 (380)
T PRK00025 324 -------EEATPEKLARALLPLLAD--GARRQALLEGF 352 (380)
T ss_pred -------CCCCHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 778999999999999998 88888888875
No 91
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.78 E-value=2.2e-17 Score=174.90 Aligned_cols=216 Identities=18% Similarity=0.145 Sum_probs=152.2
Q ss_pred cCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHHHHh
Q 007873 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (586)
Q Consensus 316 ~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 394 (586)
.+|.++++|+..++.+.+ .|++.+ ++.+++|++ |...+.+... ....+++++
T Consensus 141 ~ad~~~~~s~~~~~~l~~---~G~~~~------~I~vign~~~d~~~~~~~~~------------------~~~~~~~~~ 193 (365)
T TIGR00236 141 IADLHFAPTEQAKDNLLR---ENVKAD------SIFVTGNTVIDALLTNVEIA------------------YSSPVLSEF 193 (365)
T ss_pred HHHhccCCCHHHHHHHHH---cCCCcc------cEEEeCChHHHHHHHHHhhc------------------cchhHHHhc
Confidence 589999999999999986 577755 899999997 4322211110 023455566
Q ss_pred CCCCCCCCcEEEEEe-cCc-cccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 395 GLPVDRNIPVIGFIG-RLE-EQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 395 gl~~~~~~~~i~~iG-rl~-~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
+. +.+++++.+ |.+ ..||++.+++|+.++.+ ++++++++|.+.......+.+.. ....++.+.........
T Consensus 194 ~~----~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 268 (365)
T TIGR00236 194 GE----DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHL-GDSKRVHLIEPLEYLDF 268 (365)
T ss_pred CC----CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHh-CCCCCEEEECCCChHHH
Confidence 53 224555555 543 45899999999999864 58899988655432333333322 22346777766666667
Q ss_pred HHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
..+++.||+++.+| |..++|||+||+|||++ +.|+..|++.++ .++++ +.|++++++++.++
T Consensus 269 ~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv-----------~~d~~~i~~ai~~l 331 (365)
T TIGR00236 269 LNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLV-----------GTDKENITKAAKRL 331 (365)
T ss_pred HHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEe-----------CCCHHHHHHHHHHH
Confidence 78999999999887 66789999999999996 678888988866 55553 47999999999999
Q ss_pred HHhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 007873 550 LATYGTQALAEMMKNG--MAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 550 l~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~ 582 (586)
+++ ++.+++|+.+. +....+++++++.+.++
T Consensus 332 l~~--~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 332 LTD--PDEYKKMSNASNPYGDGEASERIVEELLNH 364 (365)
T ss_pred HhC--hHHHHHhhhcCCCCcCchHHHHHHHHHHhh
Confidence 988 77777777654 23445667777666553
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.77 E-value=5.1e-17 Score=185.48 Aligned_cols=291 Identities=17% Similarity=0.214 Sum_probs=199.7
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
-| +|..||+|..++|.+++... +++++-|.+|-.++ ..+ |..+ | .
T Consensus 232 gD-~VWVHDYHL~LlP~~LR~~~------p~~~IGfFlHiPFP-----s~Eifr~L--P--------------------~ 277 (934)
T PLN03064 232 GD-VVWCHDYHLMFLPKCLKEYN------SNMKVGWFLHTPFP-----SSEIHRTL--P--------------------S 277 (934)
T ss_pred CC-EEEEecchhhHHHHHHHHhC------CCCcEEEEecCCCC-----ChHHHhhC--C--------------------c
Confidence 36 99999999999999999875 68999999995443 211 1111 1 1
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcch--hhh---hccCeeEecCCcccCCcCCCCccccccccCcccc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD--NII---RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~~--~~~---~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~ 379 (586)
...+-.++..||.|=+.+..++..+.+.+. .|.+.. .+. +..++.++|-|||+..|......
T Consensus 278 r~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~----------- 346 (934)
T PLN03064 278 RSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET----------- 346 (934)
T ss_pred HHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC-----------
Confidence 244567788999999999999988875321 122211 000 12357788999999888643210
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CC----eEEEEE-----eCCC--hhhHH
Q 007873 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVL-----GTGK--KPMEK 446 (586)
Q Consensus 380 ~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~----v~lvIv-----G~g~--~~~~~ 446 (586)
..-.....+++++++ ++++|+.++|+++.||+...++|+.+|.+ |+ +.|+-+ |+++ ..++.
T Consensus 347 -~~v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~ 420 (934)
T PLN03064 347 -PQVQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTS 420 (934)
T ss_pred -hhHHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHH
Confidence 001112345666654 44799999999999999999999998754 44 334433 2332 12444
Q ss_pred HHHHHHHHCCCc--------eEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCC----cEEEcCCcCccc
Q 007873 447 QLEQLEILYPEK--------ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT----VPIVASTGGLVD 513 (586)
Q Consensus 447 ~l~~l~~~~~~~--------v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~----PvI~s~~gg~~e 513 (586)
++.++..+.+.+ +.... .++.+++..+|+.||++++||..|+++++.+|||+|+. ++|.|...|..+
T Consensus 421 ~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~ 500 (934)
T PLN03064 421 QVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQ 500 (934)
T ss_pred HHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHH
Confidence 555555443311 22222 24678888999999999999999999999999999954 455588888887
Q ss_pred ccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 007873 514 TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEE 582 (586)
Q Consensus 514 ~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~ 582 (586)
.+ +..++++ +|.|++++|++|.++|+.. ++.++++.+..+ ...+||..-++.+++.
T Consensus 501 ~L--~~~AllV----------NP~D~~~vA~AI~~AL~M~-~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~ 558 (934)
T PLN03064 501 SL--GAGAILV----------NPWNITEVAASIAQALNMP-EEEREKRHRHNFMHVTTHTAQEWAETFVSE 558 (934)
T ss_pred Hh--CCceEEE----------CCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 77 3468887 9999999999999999852 444455444443 4778988888877654
No 93
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=6.8e-16 Score=157.81 Aligned_cols=218 Identities=28% Similarity=0.447 Sum_probs=166.6
Q ss_pred cCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhC
Q 007873 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (586)
Q Consensus 316 ~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 395 (586)
..+.+++.++.....+.. ... ..++.+++|+++...+.+.. .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~---------------------------~~ 192 (381)
T COG0438 150 LADRVIAVSPALKELLEA---LGV-------PNKIVVIPNGIDTEKFAPAR---------------------------IG 192 (381)
T ss_pred cccEEEECCHHHHHHHHH---hCC-------CCCceEecCCcCHHHcCccc---------------------------cC
Confidence 478899999887555443 111 12688899999988776520 11
Q ss_pred CCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHH
Q 007873 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAH 471 (586)
Q Consensus 396 l~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~ 471 (586)
+..+.....++++||+.+.||++.+++++..+.. +++.++++|.+... ...+.++..++. .++.+.+..+.++..
T Consensus 193 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 271 (381)
T COG0438 193 LLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER-REELEKLAKKLGLEDNVKFLGYVPDEELA 271 (381)
T ss_pred CCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc-HHHHHHHHHHhCCCCcEEEecccCHHHHH
Confidence 1111113689999999999999999999999976 34899999999843 233444444443 457776666656666
Q ss_pred HHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 472 ~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
.+++.||++++||.+|++|++++|||++|+|||+++.++..|++.++.+|+++ .+.|++++++++..+++
T Consensus 272 ~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~----------~~~~~~~~~~~i~~~~~ 341 (381)
T COG0438 272 ELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLV----------PPGDVEELADALEQLLE 341 (381)
T ss_pred HHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEec----------CCCCHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999998888864 66689999999999998
Q ss_pred hcCHHHHHHHHHHH---HHhcCCHHHHHHHHHHHh
Q 007873 552 TYGTQALAEMMKNG---MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 552 ~~~~~~~~~~~~~~---~~~~fsw~~~a~~~~~~~ 583 (586)
+ .+.++.+.+++ ....|+|+..++++.+..
T Consensus 342 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (381)
T COG0438 342 D--PELREELGEAARERVEEEFSWERIAEQLLELY 374 (381)
T ss_pred C--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8 55566665422 237999999999877654
No 94
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.73 E-value=6.4e-16 Score=153.07 Aligned_cols=204 Identities=15% Similarity=0.148 Sum_probs=152.5
Q ss_pred hHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHH
Q 007873 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (586)
Q Consensus 311 ~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (586)
+.+-..||.+++.|.+..+.+.+. ++. ..+.+++...+++.+
T Consensus 217 ~~~G~~ad~vm~NssWT~nHI~qi--W~~--------~~~~iVyPPC~~e~l---------------------------- 258 (465)
T KOG1387|consen 217 QSAGSKADIVMTNSSWTNNHIKQI--WQS--------NTCSIVYPPCSTEDL---------------------------- 258 (465)
T ss_pred HhccccceEEEecchhhHHHHHHH--hhc--------cceeEEcCCCCHHHH----------------------------
Confidence 444568999999999999888752 222 256666666655433
Q ss_pred HHHhCCCCCCCCcEEEEEecCccccCHH-HHHHHHhhccc------CCeEEEEEeCCC----hhhHHHHHHHHHHCC--C
Q 007873 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSD-ILAAAIPHFIK------ENVQIIVLGTGK----KPMEKQLEQLEILYP--E 457 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d-~Ll~A~~~l~~------~~v~lvIvG~g~----~~~~~~l~~l~~~~~--~ 457 (586)
....+- ++.+.+.++++|.+.|+|+.. +=++|+..... ++++|+|+|+-. .+..+.++++++++. .
T Consensus 259 ks~~~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~ 337 (465)
T KOG1387|consen 259 KSKFGT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPK 337 (465)
T ss_pred HHHhcc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCcc
Confidence 222222 344668999999999999999 33556555444 479999999843 345566777777654 4
Q ss_pred ceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC-ccccccc---CcceEEEccccccccC
Q 007873 458 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG-LVDTVEE---GFTGFQMGSFSVDCEA 533 (586)
Q Consensus 458 ~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg-~~e~v~~---g~~G~~~~~~~~~~~~ 533 (586)
++.+....+-+.+..+|..|.+.+..-..|.||+.+.|+||+|+-+|+.+.|| .-|+|.+ ..+||+.
T Consensus 338 ~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla--------- 408 (465)
T KOG1387|consen 338 HVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLA--------- 408 (465)
T ss_pred ceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeec---------
Confidence 67777777778888999999999999999999999999999999999999777 5667754 4679974
Q ss_pred CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007873 534 VDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 566 (586)
Q Consensus 534 v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 566 (586)
.+.++.|+++.+++... .+.+-.|+++++
T Consensus 409 ---~t~~EYaE~iLkIv~~~-~~~r~~~r~~AR 437 (465)
T KOG1387|consen 409 ---PTDEEYAEAILKIVKLN-YDERNMMRRNAR 437 (465)
T ss_pred ---CChHHHHHHHHHHHHcC-HHHHHHHHHHHH
Confidence 67889999999999873 444667777774
No 95
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-13 Score=137.30 Aligned_cols=299 Identities=17% Similarity=0.226 Sum_probs=192.6
Q ss_pred CCCEEEEecCCc--cchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCC
Q 007873 227 GEDVVFVANDWH--TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 304 (586)
Q Consensus 227 ~pDvii~~h~~~--~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (586)
.+| +|..++-+ ..++.|++...+ .+++.+...||..|. . . +.+..|...|+.
T Consensus 103 ~~~-~ilvQNPP~iPtliv~~~~~~l------~~~KfiIDWHNy~Ys-l-------~----------l~~~~g~~h~lV- 156 (444)
T KOG2941|consen 103 PPD-IILVQNPPSIPTLIVCVLYSIL------TGAKFIIDWHNYGYS-L-------Q----------LKLKLGFQHPLV- 156 (444)
T ss_pred CCc-EEEEeCCCCCchHHHHHHHHHH------hcceEEEEehhhHHH-H-------H----------HHhhcCCCCchH-
Confidence 589 55555533 345566666554 699999999998872 0 0 011122223332
Q ss_pred cchhhh-hHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCC-----cccCC----cCCCCcccccccc
Q 007873 305 RKINWM-KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-----MDVQE----WNPLTDKYIGVKY 374 (586)
Q Consensus 305 ~~~~~~-~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ng-----vd~~~----~~p~~~~~~~~~~ 374 (586)
+..+|+ +..-+.||.-+||++.+++++.. .+|+. +..+++.- .+.++ |.+.... +.+|
T Consensus 157 ~l~~~~E~~fgk~a~~nLcVT~AMr~dL~q--nWgi~--------ra~v~YDrPps~~~~l~~~H~lf~~l~~d--~~~f 224 (444)
T KOG2941|consen 157 RLVRWLEKYFGKLADYNLCVTKAMREDLIQ--NWGIN--------RAKVLYDRPPSKPTPLDEQHELFMKLAGD--HSPF 224 (444)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHH--hcCCc--------eeEEEecCCCCCCCchhHHHHHHhhhccc--cchh
Confidence 234444 55667899999999999999986 36754 33444321 11111 2111110 0001
Q ss_pred CccccccccHHHHHHHHHHhC--C-C-CCCCCcEEEEEecCccccCHHHHHHHHhhcc-----c----CCeEEEEEeCCC
Q 007873 375 DASTVMDAKPLLKEALQAEVG--L-P-VDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-----K----ENVQIIVLGTGK 441 (586)
Q Consensus 375 ~~~~~~~~~~~~~~~l~~~~g--l-~-~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~-----~----~~v~lvIvG~g~ 441 (586)
-+ ...+.+.....++-++.. . . ..+...+++......+..++.+|++|+.... + |.+-.+|.|+|+
T Consensus 225 ~a-r~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP 303 (444)
T KOG2941|consen 225 RA-REPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP 303 (444)
T ss_pred hh-cccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc
Confidence 11 122445555555554443 1 0 0112346777778899999999999998431 1 578888999998
Q ss_pred hhhHHHHHHHHHHCC-CceEEEe-ccChHHHHHHHHhccEEEE--cCCC-CCCcHHHHHHHHcCCcEEEcCCcCcccccc
Q 007873 442 KPMEKQLEQLEILYP-EKARGVA-KFNIPLAHMIIAGADFILI--PSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVE 516 (586)
Q Consensus 442 ~~~~~~l~~l~~~~~-~~v~~~~-~~~~~~~~~~l~~aDi~l~--PS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~v~ 516 (586)
.++...+...+++ .++.... +...++.+.+++.||+.|. +|.. =-.|++++.-..||+||++-+...+.|+|+
T Consensus 304 --lkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVk 381 (444)
T KOG2941|consen 304 --LKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVK 381 (444)
T ss_pred --hhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHh
Confidence 3333333333333 2444444 4477888899999998765 4433 358999999999999999999999999999
Q ss_pred cCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHH-hcCCHHHHHHH
Q 007873 517 EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMA-QDLSWKVSIGT 578 (586)
Q Consensus 517 ~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~--~~~~~~~~~~~~~-~~fsw~~~a~~ 578 (586)
+++||++| +|.++|++.+..+.+++. ...+.+..+|.++ +...|+..=++
T Consensus 382 h~eNGlvF------------~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~ 434 (444)
T KOG2941|consen 382 HGENGLVF------------EDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDESWER 434 (444)
T ss_pred cCCCceEe------------ccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHHHHH
Confidence 99999998 899999999999999652 4567788888764 56677665444
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.62 E-value=1.6e-15 Score=136.77 Aligned_cols=130 Identities=29% Similarity=0.378 Sum_probs=95.5
Q ss_pred CcEEEEEecCccccCHHHHHH-HHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 402 IPVIGFIGRLEEQKGSDILAA-AIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~-A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
.++|+++|++.+.||++.+++ +++++.+ ++++|+|+|.+++ +++++ .. .++.+++.. +++.++++.||
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~----~l~~~-~~--~~v~~~g~~--~e~~~~l~~~d 72 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD----ELKRL-RR--PNVRFHGFV--EELPEILAAAD 72 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-----HHCCH-HH--CTEEEE-S---HHHHHHHHC-S
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH----HHHHh-cC--CCEEEcCCH--HHHHHHHHhCC
Confidence 368999999999999999999 9999865 7899999999874 24444 22 258888877 57888999999
Q ss_pred EEEEcCC-CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 479 FILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 479 i~l~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+++.|+. .|+++++++|||++|+|||+++. +..+++.....|++ -++|+++++++|.++++|
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~-----------~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVL-----------VANDPEELAEAIERLLND 135 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE------------TT-HHHHHHHHHHHHH-
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEE-----------ECCCHHHHHHHHHHHhcC
Confidence 9999996 57899999999999999999999 67777766667765 378999999999999875
No 97
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.59 E-value=2.7e-13 Score=144.51 Aligned_cols=210 Identities=14% Similarity=0.064 Sum_probs=128.3
Q ss_pred hHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHH
Q 007873 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (586)
Q Consensus 311 ~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (586)
+...+.+|.|++.++...+.+.. +|+ +..++.|++......... .+...
T Consensus 133 r~l~~~~d~v~~~~~~e~~~~~~---~g~---------~~~~vGnPv~~~~~~~~~-------------------~~~~~ 181 (385)
T TIGR00215 133 KKIEKATDFLLAILPFEKAFYQK---KNV---------PCRFVGHPLLDAIPLYKP-------------------DRKSA 181 (385)
T ss_pred HHHHHHHhHhhccCCCcHHHHHh---cCC---------CEEEECCchhhhccccCC-------------------CHHHH
Confidence 34456899999999988877764 333 455666766322111001 14456
Q ss_pred HHHhCCCCCCCCcEEEEE-e-cCcc-ccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEe
Q 007873 391 QAEVGLPVDRNIPVIGFI-G-RLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVA 463 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~i-G-rl~~-~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~ 463 (586)
++++|++.+ .++|++. | |..+ .|++..+++|++.+.+ +++++++.+.+.. ..+.++++...++ ..+...
T Consensus 182 r~~lgl~~~--~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~v~~~- 257 (385)
T TIGR00215 182 REKLGIDHN--GETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-RRLQFEQIKAEYGPDLQLHLI- 257 (385)
T ss_pred HHHcCCCCC--CCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-hHHHHHHHHHHhCCCCcEEEE-
Confidence 778888643 4677655 3 7777 7999999999999865 6888877554321 3344555544442 223322
Q ss_pred ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcCcccccccC-----cce---EEEccccccccCC
Q 007873 464 KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEG-----FTG---FQMGSFSVDCEAV 534 (586)
Q Consensus 464 ~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g-----~~G---~~~~~~~~~~~~v 534 (586)
.. ....+|+.||++|.+| |.+.+|+|++|+|+|... +..+...+... ..+ ++.|.-.+..-.-
T Consensus 258 --~~-~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q 329 (385)
T TIGR00215 258 --DG-DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQ 329 (385)
T ss_pred --Cc-hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcC
Confidence 22 3456999999999999 888889999999998883 22222211110 000 0111111111112
Q ss_pred CCCCHHHHHHHHHHHHHhcCH----HHHHHHHHHH
Q 007873 535 DPVDVAAVSTTVRRALATYGT----QALAEMMKNG 565 (586)
Q Consensus 535 ~~~d~~~la~~I~~ll~~~~~----~~~~~~~~~~ 565 (586)
+.-+++.+++.+.+++++ + +.++++.+..
T Consensus 330 ~~~~~~~l~~~~~~ll~~--~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 330 EECTPHPLAIALLLLLEN--GLKAYKEMHRERQFF 362 (385)
T ss_pred CCCCHHHHHHHHHHHhcC--CcccHHHHHHHHHHH
Confidence 446799999999999988 5 5555555544
No 98
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.49 E-value=2.1e-12 Score=141.77 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=133.9
Q ss_pred CcEEEEEe--cCccccCHHHHHHHHhhccc--CCeEEEEEeCCCh-hhHHHHHHHHHHCC--------------------
Q 007873 402 IPVIGFIG--RLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-PMEKQLEQLEILYP-------------------- 456 (586)
Q Consensus 402 ~~~i~~iG--rl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~-~~~~~l~~l~~~~~-------------------- 456 (586)
...+++++ |+ +.|.++.+|+|+.++.. |+++|.+.|.+.. .+.+.++++.++++
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 35788888 99 99999999999999954 8999999998863 34455544433321
Q ss_pred -----------CceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEc
Q 007873 457 -----------EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMG 525 (586)
Q Consensus 457 -----------~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~ 525 (586)
..+.+.+..+...+...+..+.++|.+|..|+++ .++||+++|+|+| .-|..++|.++.||+++
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li- 472 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYII- 472 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEEe-
Confidence 2233333334446778999999999999999999 9999999999999 55679999999999997
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 007873 526 SFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEE 582 (586)
Q Consensus 526 ~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~ 582 (586)
+|..+|+++|..+|.+ +..+.++...++ +++||-+++.++|.+.
T Consensus 473 -----------~d~~~l~~al~~~L~~--~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 473 -----------DDISELLKALDYYLDN--LKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred -----------CCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 8999999999999999 889999999885 5899999999998763
No 99
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.44 E-value=1.1e-12 Score=122.64 Aligned_cols=177 Identities=22% Similarity=0.279 Sum_probs=93.3
Q ss_pred EEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEEE
Q 007873 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVF 166 (586)
Q Consensus 87 Il~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 166 (586)
|+++... .|. .||+++++.+|+++|+++||+|+++++......... .. ...
T Consensus 1 ili~~~~-~~~--~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---------------~~-----------~~~ 51 (177)
T PF13439_consen 1 ILITNIF-LPN--IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---------------LV-----------KIF 51 (177)
T ss_dssp -EEECC--TTS--SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---------------EE-----------EE-
T ss_pred CEEEEec-CCC--CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---------------cc-----------cee
Confidence 4555554 453 899999999999999999999999998743322210 00 000
Q ss_pred EcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHHH
Q 007873 167 VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYL 246 (586)
Q Consensus 167 v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~l 246 (586)
...+.. ......+.......+.+.++.. +|| |||+|.+.........
T Consensus 52 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~i~~~------------~~D-iVh~~~~~~~~~~~~~ 98 (177)
T PF13439_consen 52 VKIPYP--------------------IRKRFLRSFFFMRRLRRLIKKE------------KPD-IVHIHGPPAFWIALLA 98 (177)
T ss_dssp --TT-S--------------------STSS--HHHHHHHHHHHHHHHH------------T-S-EEECCTTHCCCHHHHH
T ss_pred eeeecc--------------------cccccchhHHHHHHHHHHHHHc------------CCC-eEEecccchhHHHHHh
Confidence 000000 0111112222334444555544 499 8899987665544333
Q ss_pred HhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHH
Q 007873 247 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 326 (586)
Q Consensus 247 ~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~ 326 (586)
.. ++|+++++|+......+. . ....+.......+++...+.+|.++++|+.
T Consensus 99 ~~---------~~~~v~~~H~~~~~~~~~-------~-------------~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~ 149 (177)
T PF13439_consen 99 CR---------KVPIVYTIHGPYFERRFL-------K-------------SKLSPYSYLNFRIERKLYKKADRIIAVSES 149 (177)
T ss_dssp HH---------CSCEEEEE-HHH--HHTT-------T-------------TSCCCHHHHHHCTTHHHHCCSSEEEESSHH
T ss_pred cc---------CCCEEEEeCCCccccccc-------c-------------cccchhhhhhhhhhhhHHhcCCEEEEECHH
Confidence 21 679999999865310000 0 000000011123344557899999999999
Q ss_pred HHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcC
Q 007873 327 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWN 363 (586)
Q Consensus 327 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~ 363 (586)
.++++.+ +|++.+ ++.+||||+|++.|.
T Consensus 150 ~~~~l~~---~~~~~~------ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 150 TKDELIK---FGIPPE------KIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHHHHH---HT--SS-------EEE----B-CCCH-
T ss_pred HHHHHHH---hCCccc------CCEEEECCccHHHcC
Confidence 9999996 666644 999999999998773
No 100
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.44 E-value=3.9e-11 Score=130.00 Aligned_cols=295 Identities=17% Similarity=0.203 Sum_probs=168.7
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcch
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (586)
+|-+|..||+|-.++|.+++... +++++.|.+|-.++.. +.|..+ ...
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHiPFPs~----e~fr~l----------------------P~r 188 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERG------PDARIGFFLHIPFPSS----EIFRCL----------------------PWR 188 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--------SEEEEEE-S----H----HHHTTS----------------------TTH
T ss_pred CCCEEEEeCCcHHHHHHHHHhhc------CCceEeeEEecCCCCH----HHHhhC----------------------CcH
Confidence 44399999999999999999875 6899999999644311 111111 123
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCc--cCCCcchhh---h----hccCeeEecCCcccCCcCCCCccccccccCccc
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGE--DKGVELDNI---I----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~--~~g~~~~~~---~----~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~ 378 (586)
..+-.++..||.|-+.+..+++.+.+.+ ..|++.+.- + +...+.+.|-|+|++.+......
T Consensus 189 ~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~---------- 258 (474)
T PF00982_consen 189 EEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARS---------- 258 (474)
T ss_dssp HHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-----------
T ss_pred HHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccC----------
Confidence 4566788899999999999998876532 123321110 0 12357778888888776421100
Q ss_pred cccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCC----h---hhH
Q 007873 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----K---PME 445 (586)
Q Consensus 379 ~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~----~---~~~ 445 (586)
+.-......++++++- +.++|+-+.|++..||+..=++|+.+|.+ .++.|+=++... + .+.
T Consensus 259 --~~v~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~ 332 (474)
T PF00982_consen 259 --PEVQERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELR 332 (474)
T ss_dssp --S---HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHH
T ss_pred --hHHHHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHH
Confidence 0111223456666641 24799999999999999999999998865 468888666522 2 344
Q ss_pred HHHHHHHHH----CCC----ceEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCc----EEEcCCcCcc
Q 007873 446 KQLEQLEIL----YPE----KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLV 512 (586)
Q Consensus 446 ~~l~~l~~~----~~~----~v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~P----vI~s~~gg~~ 512 (586)
.+++++..+ ++. -|.... ..+.++...+|+.||+++++|..+|+.++..|+.+|... +|.|...|..
T Consensus 333 ~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa 412 (474)
T PF00982_consen 333 REVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAA 412 (474)
T ss_dssp HHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGG
T ss_pred HHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHH
Confidence 555555443 331 133332 346678888999999999999999999999999999665 6888878888
Q ss_pred cccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 007873 513 DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 513 e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fsw~~~a~~~~~~ 582 (586)
+.+.++ .+++ +|.|++++|++|.++|+.+..+....+.+.. ....+|-..=++.+++.
T Consensus 413 ~~L~~~--al~V----------NP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~ 471 (474)
T PF00982_consen 413 EQLSEA--ALLV----------NPWDIEEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAESFLRD 471 (474)
T ss_dssp GT-TTS---EEE-----------TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHcCCc--cEEE----------CCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHHHH
Confidence 887753 2555 9999999999999999974222222222211 23455555555555543
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.42 E-value=2e-11 Score=130.76 Aligned_cols=289 Identities=15% Similarity=0.121 Sum_probs=192.8
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
-| +|-.||+|..++|.+++... ++.++-|.+|-..+ ..+ |..+ | .
T Consensus 124 ~D-~VWVHDYhL~llp~~LR~~~------~~~~IgFFlHiPFP-----s~eifr~L--P--------------------~ 169 (474)
T PRK10117 124 DD-IIWIHDYHLLPFASELRKRG------VNNRIGFFLHIPFP-----TPEIFNAL--P--------------------P 169 (474)
T ss_pred CC-EEEEeccHhhHHHHHHHHhC------CCCcEEEEEeCCCC-----ChHHHhhC--C--------------------C
Confidence 36 99999999999999999875 68899999995443 211 1111 1 1
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcchh--hh----hccCeeEecCCcccCCcCCCCccccccccCccc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN--II----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~~~--~~----~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~ 378 (586)
...+-.++..+|.|-+.++.+++.+.+.+. .|.+... .+ +..++.+.|-|||++.|......
T Consensus 170 r~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~---------- 239 (474)
T PRK10117 170 HDELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAG---------- 239 (474)
T ss_pred hHHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhc----------
Confidence 244567788999999999999888775221 1222100 01 12367888999998877432110
Q ss_pred cccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCC-------hhhH
Q 007873 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK-------KPME 445 (586)
Q Consensus 379 ~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~-------~~~~ 445 (586)
. .......+++.++ +..+|+-+.|++..||+..=++|++.|.+ .++.|+-+.... ..+.
T Consensus 240 --~-~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~ 311 (474)
T PRK10117 240 --P-LPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIR 311 (474)
T ss_pred --h-HHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHH
Confidence 0 0111334555554 34799999999999999999999999875 367788666532 2345
Q ss_pred HHHHHHHHHCCCc--------eEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCC-----cEEEcCCcCc
Q 007873 446 KQLEQLEILYPEK--------ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-----VPIVASTGGL 511 (586)
Q Consensus 446 ~~l~~l~~~~~~~--------v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~-----PvI~s~~gg~ 511 (586)
.+++++..+.+++ +.... .++.+++..+|+.||++++++..+|+.++..|+.+|-. +.|.|...|.
T Consensus 312 ~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGa 391 (474)
T PRK10117 312 HQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA 391 (474)
T ss_pred HHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccch
Confidence 5666655543211 22111 23567777899999999999999999999999999965 3788887777
Q ss_pred ccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 007873 512 VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 512 ~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fsw~~~a~~~~~ 581 (586)
.+.+.+ .+++ +|.|++++|++|.++|+.+..+..+++.+.- ....+|-..=++.+++
T Consensus 392 A~~L~~---AllV----------NP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~ 449 (474)
T PRK10117 392 ANELTS---ALIV----------NPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFIS 449 (474)
T ss_pred HHHhCC---CeEE----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHH
Confidence 777742 4555 9999999999999999985333333333221 2244444444444443
No 102
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.35 E-value=1.3e-10 Score=134.06 Aligned_cols=267 Identities=15% Similarity=0.200 Sum_probs=180.9
Q ss_pred CEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcch
Q 007873 229 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (586)
Q Consensus 229 Dvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (586)
| +|..||+|..++|.+++... +++++.|.+|..++ ..+ |..+ | ..
T Consensus 203 d-~VWVhDYhL~llP~~LR~~~------~~~~IgfFlHiPFP-----s~eifr~L--P--------------------~r 248 (854)
T PLN02205 203 D-FVWIHDYHLMVLPTFLRKRF------NRVKLGFFLHSPFP-----SSEIYKTL--P--------------------IR 248 (854)
T ss_pred C-EEEEeCchhhHHHHHHHhhC------CCCcEEEEecCCCC-----ChHHHhhC--C--------------------cH
Confidence 7 99999999999999998875 68999999996543 211 1111 1 22
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcchh-----hh----hccCeeEecCCcccCCcCCCCccccccccCc
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN-----II----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 376 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~~~-----~~----~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~ 376 (586)
..+-.++..||.|=+.+..+++.+.+.+. .|++.+. -+ +..++.+.|-|+|+..|......
T Consensus 249 ~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~-------- 320 (854)
T PLN02205 249 EELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSL-------- 320 (854)
T ss_pred HHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcC--------
Confidence 44567788999999999999988876221 2332211 00 23467788889998877432110
Q ss_pred cccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C----CeEEEEEeCCC-------hh
Q 007873 377 STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK-------KP 443 (586)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~----~v~lvIvG~g~-------~~ 443 (586)
..-.....+++++++- ++..+|+-+.|++..||+..=++|+.+|.+ | ++.|+-+.... .+
T Consensus 321 ----~~~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~ 393 (854)
T PLN02205 321 ----PETEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKE 393 (854)
T ss_pred ----hhHHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHH
Confidence 0011123345665542 245799999999999999999999999865 3 67777666432 23
Q ss_pred hHHHHHHHHHH----CCC----ceEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCC-------------
Q 007873 444 MEKQLEQLEIL----YPE----KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT------------- 501 (586)
Q Consensus 444 ~~~~l~~l~~~----~~~----~v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~------------- 501 (586)
++.+++++..+ ++. -|.... .++.+++..+|+.||++++++..+++.++..|+.+|..
T Consensus 394 ~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~ 473 (854)
T PLN02205 394 VQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEP 473 (854)
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCcccccccccccc
Confidence 44455555543 321 122222 23567778899999999999999999999999999854
Q ss_pred ------cEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHH
Q 007873 502 ------VPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA 557 (586)
Q Consensus 502 ------PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~ 557 (586)
+.|.|.-.|....+.+ .++ |+|.|++++|++|.++|+.+..+.
T Consensus 474 ~~~~~gvLiLSEfaGaa~~L~~---Ai~----------VNP~d~~~~a~ai~~AL~m~~~Er 522 (854)
T PLN02205 474 STPKKSMLVVSEFIGCSPSLSG---AIR----------VNPWNIDAVADAMDSALEMAEPEK 522 (854)
T ss_pred ccCCCCceEeeeccchhHHhCc---CeE----------ECCCCHHHHHHHHHHHHcCCHHHH
Confidence 2455555555544431 344 499999999999999999853343
No 103
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.33 E-value=3.2e-12 Score=117.33 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=85.3
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEEEEcCccccccccCCC
Q 007873 101 GGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180 (586)
Q Consensus 101 GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~ 180 (586)
||++.++.+|+++|+++||+|+++++..+...+. ...+|+.+..++.+.....
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~----- 53 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE----------------------EEEDGVRVHRLPLPRRPWP----- 53 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S----------------------EEETTEEEEEE--S-SSSG-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc----------------------cccCCceEEeccCCccchh-----
Confidence 8999999999999999999999999875432210 1234666665543321100
Q ss_pred CCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHHHHHhhccCCCCCCCce
Q 007873 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAK 260 (586)
Q Consensus 181 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~p 260 (586)
+. ... +...+...+... ..+|| +||+|++..+++...+++. .++|
T Consensus 54 ---~~----------~~~----~~~~~~~~l~~~----------~~~~D-vv~~~~~~~~~~~~~~~~~-------~~~p 98 (160)
T PF13579_consen 54 ---LR----------LLR----FLRRLRRLLAAR----------RERPD-VVHAHSPTAGLVAALARRR-------RGIP 98 (160)
T ss_dssp ---GG----------HCC----HHHHHHHHCHHC----------T---S-EEEEEHHHHHHHHHHHHHH-------HT--
T ss_pred ---hh----------hHH----HHHHHHHHHhhh----------ccCCe-EEEecccchhHHHHHHHHc-------cCCc
Confidence 00 000 112222222111 12699 9999997766666666634 3899
Q ss_pred EEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcc-hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCC
Q 007873 261 VVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK-INWMKAGILESDMVLTVSPHYAQELVSGEDKGV 339 (586)
Q Consensus 261 vv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~ 339 (586)
+|+++|+...... ..+. .+. ..+.+..+..+|.++++|+..++.+.+ +|+
T Consensus 99 ~v~~~h~~~~~~~------------~~~~--------------~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~---~g~ 149 (160)
T PF13579_consen 99 LVVTVHGTLFRRG------------SRWK--------------RRLYRWLERRLLRRADRVIVVSEAMRRYLRR---YGV 149 (160)
T ss_dssp EEEE-SS-T------------------HH--------------HHHHHHHHHHHHHH-SEEEESSHHHHHHHHH---H--
T ss_pred EEEEECCCchhhc------------cchh--------------hHHHHHHHHHHHhcCCEEEECCHHHHHHHHH---hCC
Confidence 9999997432110 0000 011 233467888999999999999999996 677
Q ss_pred cchhhhhccCeeEecCC
Q 007873 340 ELDNIIRKTGIKGIVNG 356 (586)
Q Consensus 340 ~~~~~~~~~~i~vI~ng 356 (586)
+.+ ++.+||||
T Consensus 150 ~~~------ri~vipnG 160 (160)
T PF13579_consen 150 PPD------RIHVIPNG 160 (160)
T ss_dssp -GG------GEEE----
T ss_pred CCC------cEEEeCcC
Confidence 766 99999998
No 104
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=6.3e-09 Score=111.25 Aligned_cols=289 Identities=18% Similarity=0.225 Sum_probs=190.9
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
-| +|..||+|..++|.+++.+. ...++.|.+|-..+ ... |..+ | .
T Consensus 148 gD-iIWVhDYhL~L~P~mlR~~~------~~~~IgfFlHiPfP-----ssEvfr~l--P--------------------~ 193 (486)
T COG0380 148 GD-IIWVHDYHLLLVPQMLRERI------PDAKIGFFLHIPFP-----SSEVFRCL--P--------------------W 193 (486)
T ss_pred CC-EEEEEechhhhhHHHHHHhC------CCceEEEEEeCCCC-----CHHHHhhC--c--------------------h
Confidence 47 99999999999999999886 68899999995443 221 1111 1 1
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCccC--C------Ccchhh-hhccCeeEecCCcccCCcCCCCccccccccCcc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGEDK--G------VELDNI-IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS 377 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~--g------~~~~~~-~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~ 377 (586)
..-+..++..+|.|-+.++.+++.+.+.+.. + +..... =+..++..+|-|+|+..|.-...
T Consensus 194 r~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~---------- 263 (486)
T COG0380 194 REEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALK---------- 263 (486)
T ss_pred HHHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhc----------
Confidence 2334567789999999999998887753211 1 110000 01136678899999888753321
Q ss_pred ccccccH--HHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCC----hh--
Q 007873 378 TVMDAKP--LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----KP-- 443 (586)
Q Consensus 378 ~~~~~~~--~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~----~~-- 443 (586)
.+. .-..+++++++- +..+|+-+.|++.-||+..=+.|+.+|.. .++.|+-++... ..
T Consensus 264 ----~~~v~~~~~el~~~~~~----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~ 335 (486)
T COG0380 264 ----SPSVQEKVLELKAELGR----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQ 335 (486)
T ss_pred ----CCchhhHHHHHHHHhcC----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHH
Confidence 011 113344555442 35799999999999999999999999975 368888777644 22
Q ss_pred -hHHHHHHHHHH----CCC----ceEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcC----CcEEEcCCc
Q 007873 444 -MEKQLEQLEIL----YPE----KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG----TVPIVASTG 509 (586)
Q Consensus 444 -~~~~l~~l~~~----~~~----~v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G----~PvI~s~~g 509 (586)
+..+++++..+ ++. -+...- ..+.+++.+++..||++++++..|++.++..|+.+|- =|.|-|...
T Consensus 336 ~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFa 415 (486)
T COG0380 336 ALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFA 415 (486)
T ss_pred HHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccc
Confidence 34445554443 331 122222 2366788899999999999999999999999999983 367777776
Q ss_pred CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 007873 510 GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 510 g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fsw~~~a~~~~~ 581 (586)
|....+.+ .+++ +|.|.+++|++|.++|+....+..+.+.... ...+++-..-+..+++
T Consensus 416 Gaa~~L~~---AliV----------NP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~ 475 (486)
T COG0380 416 GAASELRD---ALIV----------NPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLD 475 (486)
T ss_pred cchhhhcc---CEeE----------CCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 76666665 4565 9999999999999999974333222222211 1234455555555443
No 105
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.23 E-value=5e-11 Score=100.26 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=82.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHH
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 558 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~ 558 (586)
+.+.|++.+++++.++|+||||+|+|+++.+++.+++.++.+++.+ +|++++.+.|..++++ ++.+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~------------~~~~el~~~i~~ll~~--~~~~ 66 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITY------------NDPEELAEKIEYLLEN--PEER 66 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEE------------CCHHHHHHHHHHHHCC--HHHH
Confidence 4678999999999999999999999999999999999999999987 4999999999999998 8899
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHH
Q 007873 559 AEMMKNGM---AQDLSWKVSIGTVQE 581 (586)
Q Consensus 559 ~~~~~~~~---~~~fsw~~~a~~~~~ 581 (586)
+++++++. .++|||+..++++++
T Consensus 67 ~~ia~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 67 RRIAKNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 99999884 689999999999874
No 106
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=2.2e-10 Score=126.95 Aligned_cols=435 Identities=20% Similarity=0.214 Sum_probs=262.3
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEecCCC-cc-------------ccCC--------------cceEEEEEeCC-eee
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYDQ-YK-------------DAWD--------------TDVVIELKVGD-KIE 150 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~-~~-------------~~~~--------------~~~~~~~~~~~-~~~ 150 (586)
.||+|+..+.....++..|...+-++-+|.+ |. +.|. ..-.+.+...+ ...
T Consensus 114 gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~~~~~~ 193 (750)
T COG0058 114 GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGYDNRVV 193 (750)
T ss_pred cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEeccCcEE
Confidence 4999999999999999999999888877642 21 1111 00112233333 445
Q ss_pred EEEEEEEEeCCceEEEEcCccccccccCC-CCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhc-ccCCCCCCCCCCC
Q 007873 151 KVRFFHCHKRGVDRVFVDHPWFLAKVWGK-TQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILN-LNSNKYFSGPYGE 228 (586)
Q Consensus 151 ~~~~~~~~~~gv~~~~v~~~~~~~~~w~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~p 228 (586)
.++.......-+++++.+...--.+.|.+ .-..+|++++ -...+..-.+|+.+.++.+..+. ... ..+.+
T Consensus 194 ~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds---~elRl~Qeyfl~~agvq~I~~~~~~~~-----~~~~~ 265 (750)
T COG0058 194 TLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDS---KELRLKQEYFLGSAGVQDILARGHLEH-----HDLDV 265 (750)
T ss_pred EEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCc---HHHHHhhhheeeeHHHHHHHHHhhhcc-----ccccc
Confidence 55555555555566766544321111211 1125776543 11112222456667777666552 110 01123
Q ss_pred CEEEEecCCccchHHHHHHh-hccCCCC-------CCCceEEEEEcCCcccc--ccCcccccccC---CCh------hhc
Q 007873 229 DVVFVANDWHTSLIPCYLKT-MYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLN---LPA------QFK 289 (586)
Q Consensus 229 Dvii~~h~~~~~~~~~~l~~-~~~~~~~-------~~~~pvv~~iH~~~~~~--~~~~~~~~~~~---l~~------~~~ 289 (586)
- +.|.||-|.+++..-+-+ ..-..|+ ....-++||.|.+.+.+ .|+...+..+. +.. .|.
T Consensus 266 ~-~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l 344 (750)
T COG0058 266 L-ADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFL 344 (750)
T ss_pred h-hhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhh
Confidence 4 778999888775544332 2211111 12456789999886644 45544443211 000 000
Q ss_pred cccccccCC-----CCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcC---ccCCCcchhhhhccCeeEecCCcccCC
Q 007873 290 SSFDFIDGY-----NKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSG---EDKGVELDNIIRKTGIKGIVNGMDVQE 361 (586)
Q Consensus 290 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~---~~~g~~~~~~~~~~~i~vI~ngvd~~~ 361 (586)
......... ..++.. +++-..++..|..+..||.-..+.+... ..+++. +.+|.-+.||+.+..
T Consensus 345 ~~~~~~~~~~~~~~~~~i~~--v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~------p~~i~nvTNGIt~rr 416 (750)
T COG0058 345 PEVRLLYLGDLIRRGSPIEE--VNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLY------PEKINNVTNGITPRR 416 (750)
T ss_pred HHHHhhccccccccCCcccc--eehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccC------ccccccccCCcCCch
Confidence 000000000 001100 3444556777888888988776665431 122333 348899999999999
Q ss_pred cCCCCccccccccCcc--------------------------ccccccHHHHH----HHHHHhCCCCCCCCcEEEEEecC
Q 007873 362 WNPLTDKYIGVKYDAS--------------------------TVMDAKPLLKE----ALQAEVGLPVDRNIPVIGFIGRL 411 (586)
Q Consensus 362 ~~p~~~~~~~~~~~~~--------------------------~~~~~~~~~~~----~l~~~~gl~~~~~~~~i~~iGrl 411 (586)
|.-...+.+.--|+.. .+...+..+|. .+..+.|+..+++...++++-|+
T Consensus 417 Wl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRi 496 (750)
T COG0058 417 WLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRI 496 (750)
T ss_pred hhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhh
Confidence 8544433333334433 11223333443 33455678888889999999999
Q ss_pred ccccCHHHHHHHHhhc----cc---CCeEEEEEeCCC------hhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHh
Q 007873 412 EEQKGSDILAAAIPHF----IK---ENVQIIVLGTGK------KPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 412 ~~~KG~d~Ll~A~~~l----~~---~~v~lvIvG~g~------~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~ 476 (586)
.++|...+.+.-+..+ .+ +.+++++.|+.. +...+.+.+.+...+ .+|.+...++...+..++.+
T Consensus 497 heYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa 576 (750)
T COG0058 497 HEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPA 576 (750)
T ss_pred hhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhccc
Confidence 9999988865544433 32 568889999854 345566666666544 36899999999999999999
Q ss_pred ccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCcccccc--cCcceEEEccccccccC-----CCCC-CHHHHHHHH
Q 007873 477 ADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEA-----VDPV-DVAAVSTTV 546 (586)
Q Consensus 477 aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~--~g~~G~~~~~~~~~~~~-----v~~~-d~~~la~~I 546 (586)
||+-...|+ .|.+|..-+-+|..|.+-|+|-.|...|+.+ .+.|||+||....+.+. .++. +...+...|
T Consensus 577 ~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~~~v~~~~~~~~~~~~~y~~~~~~v 656 (750)
T COG0058 577 ADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYYELENEV 656 (750)
T ss_pred ccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCchhhHHHHHhcccccHHHHHHHhHHH
Confidence 999999887 5999999999999999999999999999997 88999999965544322 2222 344455555
Q ss_pred HHHHH
Q 007873 547 RRALA 551 (586)
Q Consensus 547 ~~ll~ 551 (586)
..++.
T Consensus 657 ~~~~~ 661 (750)
T COG0058 657 KPVLD 661 (750)
T ss_pred HHHHH
Confidence 55555
No 107
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.19 E-value=3e-08 Score=104.56 Aligned_cols=147 Identities=17% Similarity=0.194 Sum_probs=89.0
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccccCH-HHHHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEecc
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGS-DILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKF 465 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~-d~Ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~ 465 (586)
+..++.++++. +.++|+.+|.=.--+.+ +.+.+++..+. .++++++ +|... +++.+.. +. ++. ...|
T Consensus 173 ~~~~~~~~l~~--~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--~~~~~~~----~~-~~~-~~~f 241 (352)
T PRK12446 173 EKGLAFLGFSR--KKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--LDDSLQN----KE-GYR-QFEY 241 (352)
T ss_pred hHHHHhcCCCC--CCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch--HHHHHhh----cC-CcE-Eecc
Confidence 34456677764 34677666654445555 44455666653 3577664 45432 4433322 12 222 2244
Q ss_pred ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc-----C----cccccccCcceEEEccccccccCCCC
Q 007873 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-----G----LVDTVEEGFTGFQMGSFSVDCEAVDP 536 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g-----g----~~e~v~~g~~G~~~~~~~~~~~~v~~ 536 (586)
..+.+..+|+.||++|. =+-++++.|++++|+|.|.-... + ..+.+.+...|..+ .-+.
T Consensus 242 ~~~~m~~~~~~adlvIs----r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l--------~~~~ 309 (352)
T PRK12446 242 VHGELPDILAITDFVIS----RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVL--------YEED 309 (352)
T ss_pred hhhhHHHHHHhCCEEEE----CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEc--------chhc
Confidence 44567789999999984 34678899999999999988532 1 22244444455554 0123
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHH
Q 007873 537 VDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 537 ~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
-+++.|++.+.++++| ++.++
T Consensus 310 ~~~~~l~~~l~~ll~~--~~~~~ 330 (352)
T PRK12446 310 VTVNSLIKHVEELSHN--NEKYK 330 (352)
T ss_pred CCHHHHHHHHHHHHcC--HHHHH
Confidence 3689999999999987 55554
No 108
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.18 E-value=7.6e-10 Score=118.97 Aligned_cols=177 Identities=8% Similarity=0.021 Sum_probs=135.2
Q ss_pred hcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHh
Q 007873 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 394 (586)
Q Consensus 315 ~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 394 (586)
.+.|.||+.++...+.+.++... ..++.+||-|+=.. .+..
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~---------~~~~~~ip~g~i~~--~~~~---------------------------- 278 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDN---------EYQEQISQLGYLYP--FKKD---------------------------- 278 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCc---------ccCceEEEEEEEEe--eccc----------------------------
Confidence 57899999998877777753211 22566777665311 1111
Q ss_pred CCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHH
Q 007873 395 GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (586)
Q Consensus 395 gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ 472 (586)
++....+++++. +..|+++.+|.+ |+++|.| |.+.+ +...|.++ .++ .++.....+..+.+.+
T Consensus 279 ----~r~~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te-~s~kL~~L-~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 279 ----NKYRKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTE-MSSKLMSL-DKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred ----cCCcccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCc-ccHHHHHH-Hhc-CCcEEECCcChHHHHH
Confidence 112345666662 889999999866 8999999 87764 45788888 677 4677777887777889
Q ss_pred HHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
++..||+++-.|..|++++++.||+..|+|+++-+ +-|..+++.+ |.++ +.+|+++|+++|.++++
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~----------~~~~~~~m~~~i~~lL~ 410 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIF----------EHNEVDQLISKLKDLLN 410 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---Ccee----------cCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998 4566677776 7777 99999999999999999
Q ss_pred hcCHHHHHH
Q 007873 552 TYGTQALAE 560 (586)
Q Consensus 552 ~~~~~~~~~ 560 (586)
+ +..+++
T Consensus 411 d--~~~~~~ 417 (438)
T TIGR02919 411 D--PNQFRE 417 (438)
T ss_pred C--HHHHHH
Confidence 8 555443
No 109
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=1.4e-07 Score=98.80 Aligned_cols=323 Identities=17% Similarity=0.145 Sum_probs=181.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCe-EEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR-VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~-V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
|+|++...- +||--.....|+++|.++|++ |.++.... .. . .+.....|+.
T Consensus 1 ~~ivl~~gG------TGGHv~pAlAl~~~l~~~g~~~v~~~~~~~-~~-e--------------------~~l~~~~~~~ 52 (357)
T COG0707 1 KKIVLTAGG------TGGHVFPALALAEELAKRGWEQVIVLGTGD-GL-E--------------------AFLVKQYGIE 52 (357)
T ss_pred CeEEEEeCC------CccchhHHHHHHHHHHhhCccEEEEecccc-cc-e--------------------eeeccccCce
Confidence 455555542 788777888899999999996 55542221 00 0 0111112556
Q ss_pred EEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH
Q 007873 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (586)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~ 243 (586)
+..++...+..+ . ...++.....++++..+..+.+.. ++||+|+-+..+.+. .+
T Consensus 53 ~~~I~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~a~~il~~---------~kPd~vig~Ggyvs~-P~ 106 (357)
T COG0707 53 FELIPSGGLRRK--------G--------SLKLLKAPFKLLKGVLQARKILKK---------LKPDVVIGTGGYVSG-PV 106 (357)
T ss_pred EEEEeccccccc--------C--------cHHHHHHHHHHHHHHHHHHHHHHH---------cCCCEEEecCCcccc-HH
Confidence 666654433221 0 111333334455555555555542 479966666554443 33
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
.+..+. .++|++...-|... | ... +...+.++.|.+.
T Consensus 107 ~~Aa~~-------~~iPv~ihEqn~~~-G--------------------------------~an---k~~~~~a~~V~~~ 143 (357)
T COG0707 107 GIAAKL-------LGIPVIIHEQNAVP-G--------------------------------LAN---KILSKFAKKVASA 143 (357)
T ss_pred HHHHHh-------CCCCEEEEecCCCc-c--------------------------------hhH---HHhHHhhceeeec
Confidence 333333 47899887766543 1 111 2234567777665
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
-+. .. .+.+ +.++.+.-|.+..+... .. ....+..... +++
T Consensus 144 f~~----~~----~~~~------~~~~~~tG~Pvr~~~~~-~~--------------------~~~~~~~~~~----~~~ 184 (357)
T COG0707 144 FPK----LE----AGVK------PENVVVTGIPVRPEFEE-LP--------------------AAEVRKDGRL----DKK 184 (357)
T ss_pred ccc----cc----ccCC------CCceEEecCcccHHhhc-cc--------------------hhhhhhhccC----CCc
Confidence 544 11 1222 22566666666654443 11 1112222111 446
Q ss_pred EEEEEec-CccccCHHHHHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEE
Q 007873 404 VIGFIGR-LEEQKGSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 404 ~i~~iGr-l~~~KG~d~Ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
+|+.+|. .+-.+=-+.+.++...+.+ +++++. +|.+. + +.+.+.-.+++ +.....|..+ +..+|+.||++|
T Consensus 185 ~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--~-~~~~~~~~~~~--~~~v~~f~~d-m~~~~~~ADLvI 257 (357)
T COG0707 185 TILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--L-EELKSAYNELG--VVRVLPFIDD-MAALLAAADLVI 257 (357)
T ss_pred EEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch--H-HHHHHHHhhcC--cEEEeeHHhh-HHHHHHhccEEE
Confidence 6666655 5555544444455555543 677764 44433 2 23333333333 2334445444 667999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCCcCc--------ccccccCcceEEEccccccccCCCCCC--HHHHHHHHHHHHH
Q 007873 482 IPSRFEPCGLIQLHAMRYGTVPIVASTGGL--------VDTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRALA 551 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~gg~--------~e~v~~g~~G~~~~~~~~~~~~v~~~d--~~~la~~I~~ll~ 551 (586)
. + +=++++-|..++|+|.|--..+.- +..+.+...|.++ +..+ ++.+.+.|.++++
T Consensus 258 s--R--aGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i----------~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 258 S--R--AGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVI----------RQSELTPEKLAELILRLLS 323 (357)
T ss_pred e--C--CcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEe----------ccccCCHHHHHHHHHHHhc
Confidence 3 3 456999999999999988765433 3344555666666 5555 9999999999999
Q ss_pred hcCHHHHHHHHHHHH
Q 007873 552 TYGTQALAEMMKNGM 566 (586)
Q Consensus 552 ~~~~~~~~~~~~~~~ 566 (586)
+ ++.+++|.+++.
T Consensus 324 ~--~~~l~~m~~~a~ 336 (357)
T COG0707 324 N--PEKLKAMAENAK 336 (357)
T ss_pred C--HHHHHHHHHHHH
Confidence 8 889999988874
No 110
>PRK14986 glycogen phosphorylase; Provisional
Probab=99.00 E-value=2.6e-08 Score=112.05 Aligned_cols=299 Identities=18% Similarity=0.210 Sum_probs=192.0
Q ss_pred CCEEEEecCCccchHHHHHH-hhccCCCC-------CCCceEEEEEcCCcccc--ccCcccccccC-----C----Chhh
Q 007873 228 EDVVFVANDWHTSLIPCYLK-TMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLN-----L----PAQF 288 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~-~~~~~~~~-------~~~~pvv~~iH~~~~~~--~~~~~~~~~~~-----l----~~~~ 288 (586)
..++||.||-|++++..-+- ......|+ ....-++||-|.+.+.+ .|+.+.+..+- + ..++
T Consensus 313 ~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~f 392 (815)
T PRK14986 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF 392 (815)
T ss_pred cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHH
Confidence 34599999999877554433 22211111 23567899999886644 45555443321 0 0111
Q ss_pred cccc--cccc-----CCCCCcC---CcchhhhhHHhhcCCEEEEeCHHHHHHHhcCc---cCCCcchhhhhccCeeEecC
Q 007873 289 KSSF--DFID-----GYNKPVR---GRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKGIVN 355 (586)
Q Consensus 289 ~~~~--~~~~-----~~~~~~~---~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~---~~g~~~~~~~~~~~i~vI~n 355 (586)
...+ .|.. +....+. ...+++...++..|..|..||.-..+.+.+.. .+.+- +.++.-|.|
T Consensus 393 l~~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~df~~l~------P~kf~niTN 466 (815)
T PRK14986 393 LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIF------PGRFCNVTN 466 (815)
T ss_pred HHHHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHHHHHhhC------CCcccccCC
Confidence 1110 0000 0000000 11345556677788889899987765543211 01111 236777999
Q ss_pred CcccCCcC----CCCcc----cccc--------------ccCccc----cccccHHHHHH----HHHHhCCCCCCCCcEE
Q 007873 356 GMDVQEWN----PLTDK----YIGV--------------KYDAST----VMDAKPLLKEA----LQAEVGLPVDRNIPVI 405 (586)
Q Consensus 356 gvd~~~~~----p~~~~----~~~~--------------~~~~~~----~~~~~~~~~~~----l~~~~gl~~~~~~~~i 405 (586)
|+.+..|- |.-.+ +|.- -.++++ +.+.+..+|.. ++++.|...+++...+
T Consensus 467 GV~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd 546 (815)
T PRK14986 467 GVTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFD 546 (815)
T ss_pred CCChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCccccee
Confidence 99998885 32111 1110 011222 22334444444 4557798888899999
Q ss_pred EEEecCccccCHHH-HHHHHhhc---cc-C-----CeEEEEEeCCC------hhhHHHHHHHHH------HCCC--ceEE
Q 007873 406 GFIGRLEEQKGSDI-LAAAIPHF---IK-E-----NVQIIVLGTGK------KPMEKQLEQLEI------LYPE--KARG 461 (586)
Q Consensus 406 ~~iGrl~~~KG~d~-Ll~A~~~l---~~-~-----~v~lvIvG~g~------~~~~~~l~~l~~------~~~~--~v~~ 461 (586)
+++-|+.++|...+ ++..+..+ .+ + ++++++.|+.. +...+.+.+++. ...+ ++.+
T Consensus 547 ~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVF 626 (815)
T PRK14986 547 VQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVF 626 (815)
T ss_pred eeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEE
Confidence 99999999999999 66665444 33 2 68999999854 345556666665 3344 7889
Q ss_pred EeccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEcccccccc
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCE 532 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~~~~~~~~ 532 (586)
...++...+..++.+||+....|+ .|.+|..-+-+|..|.+-+++-.|...|+.++ +.|||+||....++.
T Consensus 627 lenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ev~ 701 (815)
T PRK14986 627 IPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVE 701 (815)
T ss_pred eCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHHHH
Confidence 999999999999999999999988 59999999999999999999999999999987 899999986555533
No 111
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=98.90 E-value=3.4e-08 Score=110.61 Aligned_cols=296 Identities=16% Similarity=0.186 Sum_probs=188.4
Q ss_pred CCCEEEEecCCccchHHHH-HHhhccCCCC-------CCCceEEEEEcCCcccc--ccCcccccccCCChhhc----ccc
Q 007873 227 GEDVVFVANDWHTSLIPCY-LKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFK----SSF 292 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~-l~~~~~~~~~-------~~~~pvv~~iH~~~~~~--~~~~~~~~~~~l~~~~~----~~~ 292 (586)
.+. +||.||-|++++..- ++......|+ ....-++||.|.+.+.+ .|+...+..+ +|.-+. ..-
T Consensus 302 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~-Lpr~~~ii~~in~ 379 (798)
T PRK14985 302 DYE-VIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSL-LPRHMQIIKEINT 379 (798)
T ss_pred CCc-EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHH-hHHHHHHHHHHHH
Confidence 466 999999988775443 3322211111 23557899999886644 4555444322 111110 000
Q ss_pred ccc----cCCCC---------CcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCcc---CCCcchhhhhccCeeEecCC
Q 007873 293 DFI----DGYNK---------PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGED---KGVELDNIIRKTGIKGIVNG 356 (586)
Q Consensus 293 ~~~----~~~~~---------~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~---~g~~~~~~~~~~~i~vI~ng 356 (586)
.|. ..+.. .+....+++-..++..|..|..||.-..+.+.+... +.+- +.++.-+.||
T Consensus 380 ~fl~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~df~~l~------p~kf~nvTNG 453 (798)
T PRK14985 380 RFKTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLW------PNKFHNVTNG 453 (798)
T ss_pred HHHHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHhchhHHhhhhhhHhhC------CCccCCcCCC
Confidence 010 00000 000112444455666777788888766554443111 1111 3477889999
Q ss_pred cccCCcC----CCCc----cccc-------------cccC-cccc----ccccHHHHHH----HHHHhCCCCCCCCcEEE
Q 007873 357 MDVQEWN----PLTD----KYIG-------------VKYD-ASTV----MDAKPLLKEA----LQAEVGLPVDRNIPVIG 406 (586)
Q Consensus 357 vd~~~~~----p~~~----~~~~-------------~~~~-~~~~----~~~~~~~~~~----l~~~~gl~~~~~~~~i~ 406 (586)
|.+..|- |.-. ++|. .+|. ++.. .+.+..+|.. ++++.|...+++...++
T Consensus 454 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdv 533 (798)
T PRK14985 454 ITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDV 533 (798)
T ss_pred cCcchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchh
Confidence 9999884 3211 1111 1122 2231 2334444444 45777888888889999
Q ss_pred EEecCccccCHHH-HHHHHhhccc----C-----CeEEEEEeCCC------hhhHHHHHHHHHHC------CC--ceEEE
Q 007873 407 FIGRLEEQKGSDI-LAAAIPHFIK----E-----NVQIIVLGTGK------KPMEKQLEQLEILY------PE--KARGV 462 (586)
Q Consensus 407 ~iGrl~~~KG~d~-Ll~A~~~l~~----~-----~v~lvIvG~g~------~~~~~~l~~l~~~~------~~--~v~~~ 462 (586)
++-|+.++|...+ ++..+..+.+ + ++++++.|+.. +...+.+..++... .+ +|.+.
T Consensus 534 q~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFl 613 (798)
T PRK14985 534 QIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFL 613 (798)
T ss_pred hHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEe
Confidence 9999999999999 6666544432 2 58899999854 34455555665433 23 68888
Q ss_pred eccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEcccccc
Q 007873 463 AKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVD 530 (586)
Q Consensus 463 ~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~~~~~~ 530 (586)
..++...+..++.+||+....|+ .|.+|..-+-+|..|.+-++|-.|...|+.++ +.|||+||....+
T Consensus 614 enY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~e 685 (798)
T PRK14985 614 PDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQ 685 (798)
T ss_pred CCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHH
Confidence 89999999999999999999887 59999999999999999999999999999986 7899999865554
No 112
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.89 E-value=2.3e-07 Score=104.63 Aligned_cols=292 Identities=19% Similarity=0.224 Sum_probs=192.2
Q ss_pred CCCEEEEecCCccchHHHH-HHhhccCCCC-------CCCceEEEEEcCCcccc--ccCcccccccCCChhhc-------
Q 007873 227 GEDVVFVANDWHTSLIPCY-LKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFK------- 289 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~-l~~~~~~~~~-------~~~~pvv~~iH~~~~~~--~~~~~~~~~~~l~~~~~------- 289 (586)
.+. +||.||-|++++..- ++......|+ .....++||.|.+.+.+ .|+.+.+..+ +|.-+.
T Consensus 300 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~-lpr~~~II~~In~ 377 (797)
T cd04300 300 DKV-AIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERL-LPRHLEIIYEINR 377 (797)
T ss_pred Cce-EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHH-ChHHHHHHHHHHH
Confidence 456 999999888765433 3322211111 23557899999886544 4554444322 111110
Q ss_pred -----------------cccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCc---cCCCcchhhhhccC
Q 007873 290 -----------------SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTG 349 (586)
Q Consensus 290 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~---~~g~~~~~~~~~~~ 349 (586)
..+.-++.. ....+++-..++..|..|..||.-..+.+.+.. .+.+= +.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~l~ii~~~----~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~df~~l~------P~k 447 (797)
T cd04300 378 RFLEEVRAKYPGDEDRIRRMSIIEEG----GEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELY------PEK 447 (797)
T ss_pred HHHHHHHHhcCCCHHHHHhhcccccC----CCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhHHHHHhhC------CCc
Confidence 000001110 012355556678889999999987776665420 01111 237
Q ss_pred eeEecCCcccCCcC----CCCcc----ccc-------------cccC-c----cccccccHHHHHH----HHHHhCCCCC
Q 007873 350 IKGIVNGMDVQEWN----PLTDK----YIG-------------VKYD-A----STVMDAKPLLKEA----LQAEVGLPVD 399 (586)
Q Consensus 350 i~vI~ngvd~~~~~----p~~~~----~~~-------------~~~~-~----~~~~~~~~~~~~~----l~~~~gl~~~ 399 (586)
+.-+.||+.+..|- |.-.+ .|. .+|- + ..+.+.+..+|.. +++..|+..+
T Consensus 448 f~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ld 527 (797)
T cd04300 448 FNNKTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVD 527 (797)
T ss_pred cCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 78899999998885 22111 111 0111 2 1223444445554 4667898888
Q ss_pred CCCcEEEEEecCccccCHHH-HHHHHh---hccc-C-----CeEEEEEeCCC------hhhHHHHHHHHHH------CCC
Q 007873 400 RNIPVIGFIGRLEEQKGSDI-LAAAIP---HFIK-E-----NVQIIVLGTGK------KPMEKQLEQLEIL------YPE 457 (586)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~-Ll~A~~---~l~~-~-----~v~lvIvG~g~------~~~~~~l~~l~~~------~~~ 457 (586)
++...++++-|+.++|...+ ++..+. ++.+ + ++++++.|+.. +...+.+..++.. ..+
T Consensus 528 p~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~ 607 (797)
T cd04300 528 PDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGD 607 (797)
T ss_pred CCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCC
Confidence 99999999999999999999 655544 4433 2 58899999854 3445556566553 333
Q ss_pred --ceEEEeccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEcccccc
Q 007873 458 --KARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVD 530 (586)
Q Consensus 458 --~v~~~~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~~~~~~ 530 (586)
+|.+...++...+..++.+||+....|+ .|.+|..-+-+|.-|.+.++|-.|...|+.++ ++|+|+||....+
T Consensus 608 ~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 686 (797)
T cd04300 608 KLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEE 686 (797)
T ss_pred ceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHH
Confidence 6888889999999999999999999887 59999999999999999999999999999987 8899999865544
No 113
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=8.6e-09 Score=105.78 Aligned_cols=315 Identities=18% Similarity=0.252 Sum_probs=177.1
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccC-cccccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFA-FEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
+-||-|.|+|..+...++.+... ..+-+|||.|..-. ||+- .+..+..+-.+.|- .+-..|..+ ....
T Consensus 174 ~~vVahFHEW~AGVgL~l~R~rr------l~iaTifTTHATLL-GRyLCA~~~DfYNnLd~f~--vD~EAGkr~--IYHr 242 (692)
T KOG3742|consen 174 TAVVAHFHEWQAGVGLILCRARR------LDIATIFTTHATLL-GRYLCAGNVDFYNNLDSFD--VDKEAGKRQ--IYHR 242 (692)
T ss_pred hHHHHHHHHHHhccchheehhcc------cceEEEeehhHHHH-HHHHhcccchhhhchhhcc--cchhhccch--hHHH
Confidence 45678899999876444433321 47788999996532 3211 11111111111110 001111111 1112
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHH
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (586)
+-+++.+...|+...|||+-.+-+.. -+++.++-.+.|||.++..|.....- ..-.+..
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EAe----------HlLkRKPD~itPNGLNV~KFsA~HEF-----------QNLHA~~ 301 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEAE----------HLLKRKPDVITPNGLNVKKFSAVHEF-----------QNLHAQK 301 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHH----------HHHhcCCCeeCCCCcceeehhHHHHH-----------HHHHHHH
Confidence 34556777778888999997765543 23444566778999999888654210 0112233
Q ss_pred HHHHHHHh-----C-CCCC-CCCcEEEEEecCc-cccCHHHHHHHHhhccc------CC---eEEEEEeCCCh-------
Q 007873 387 KEALQAEV-----G-LPVD-RNIPVIGFIGRLE-EQKGSDILAAAIPHFIK------EN---VQIIVLGTGKK------- 442 (586)
Q Consensus 387 ~~~l~~~~-----g-l~~~-~~~~~i~~iGrl~-~~KG~d~Ll~A~~~l~~------~~---v~lvIvG~g~~------- 442 (586)
|+.+++-+ | +.-| ++...+...||.+ ..||-|++||++++|.. .+ +.|+|.-....
T Consensus 302 KekIndFVRGHF~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesL 381 (692)
T KOG3742|consen 302 KEKINDFVRGHFHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESL 381 (692)
T ss_pred HHHHHHHhhhhccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhh
Confidence 44443321 1 1111 1334566779988 59999999999998843 12 33444432100
Q ss_pred ---hhHHHHHHHH----H----------------------------------------HCC-------------------
Q 007873 443 ---PMEKQLEQLE----I----------------------------------------LYP------------------- 456 (586)
Q Consensus 443 ---~~~~~l~~l~----~----------------------------------------~~~------------------- 456 (586)
...++|.+.. + .+|
T Consensus 382 kgqAv~kqL~dtv~~Vk~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~i 461 (692)
T KOG3742|consen 382 KGQAVRKQLWDTVNEVKEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSI 461 (692)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHh
Confidence 0000000000 0 000
Q ss_pred ------------CceEEEeccC---hH----HHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCc----cc
Q 007873 457 ------------EKARGVAKFN---IP----LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL----VD 513 (586)
Q Consensus 457 ------------~~v~~~~~~~---~~----~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~----~e 513 (586)
-++.++..|. .+ +..++..+|.+.|+||++||+|.+..|.-.+|+|-|+|+..|+ .|
T Consensus 462 Rr~~LFN~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMee 541 (692)
T KOG3742|consen 462 RRIGLFNSPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEE 541 (692)
T ss_pred HhhhcccCcccceEEEecHHHhccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHH
Confidence 1233444341 11 2335889999999999999999999999999999999998884 44
Q ss_pred ccccC-cceEEEccccccccCCCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHH----HHhcCCHHHHHHHHHH
Q 007873 514 TVEEG-FTGFQMGSFSVDCEAVDP-VDVAAVSTTVRRALATYGTQALAEMMKNG----MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 514 ~v~~g-~~G~~~~~~~~~~~~v~~-~d~~~la~~I~~ll~~~~~~~~~~~~~~~----~~~~fsw~~~a~~~~~ 581 (586)
.|.+. ..|+-+ +|-..-.| +.+++|++.+.+.... ..++++.++- +..-++|+.+...|.+
T Consensus 542 hi~d~~ayGIYI----vDRRfks~deSv~qL~~~m~~F~~q---sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~ 608 (692)
T KOG3742|consen 542 HIEDPQAYGIYI----VDRRFKSPDESVQQLASFMYEFCKQ---SRRQRIIQRNRTERLSDLLDWKYLGRYYRK 608 (692)
T ss_pred HhcCchhceEEE----EecccCChhhHHHHHHHHHHHHHHH---HHHHHHHHhcchhhHHHHHhHHHHhHHHHH
Confidence 55442 334432 33333333 3478888888887764 3444554443 3566899999888765
No 114
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.85 E-value=9.3e-08 Score=90.28 Aligned_cols=181 Identities=19% Similarity=0.267 Sum_probs=110.6
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (586)
||++|++--.| ...||.++++.+|+..|+++||+|+|.|.... +... ....+|++.+
T Consensus 3 kIaIiGtrGIP-a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~-~~~~---------------------~~~y~gv~l~ 59 (185)
T PF09314_consen 3 KIAIIGTRGIP-ARYGGFETFVEELAPRLVSKGIDVTVYCRSDY-YPYK---------------------EFEYNGVRLV 59 (185)
T ss_pred eEEEEeCCCCC-cccCcHHHHHHHHHHHHhcCCceEEEEEccCC-CCCC---------------------CcccCCeEEE
Confidence 79999988677 37999999999999999999999999998622 1110 1123578888
Q ss_pred EEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCc-cchHHH
Q 007873 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH-TSLIPC 244 (586)
Q Consensus 166 ~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~-~~~~~~ 244 (586)
.++.|..-. ..-+.....+++.+++.... .+.+.| |++.+... .+++..
T Consensus 60 ~i~~~~~g~----------------------~~si~yd~~sl~~al~~~~~-------~~~~~~-ii~ilg~~~g~~~~~ 109 (185)
T PF09314_consen 60 YIPAPKNGS----------------------AESIIYDFLSLLHALRFIKQ-------DKIKYD-IILILGYGIGPFFLP 109 (185)
T ss_pred EeCCCCCCc----------------------hHHHHHHHHHHHHHHHHHhh-------ccccCC-EEEEEcCCccHHHHH
Confidence 776552210 01111122233333321110 012478 77776655 344444
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchh-hhhHHhhcCCEEEEe
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN-WMKAGILESDMVLTV 323 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ad~vitv 323 (586)
+++.+.+ .+.|+++.+|++++. |- +|.. + .+..++ -++.+.+.||.+|+.
T Consensus 110 ~~r~~~~-----~g~~v~vN~DGlEWk-R~------------KW~~----------~-~k~~lk~~E~~avk~ad~lIaD 160 (185)
T PF09314_consen 110 FLRKLRK-----KGGKVVVNMDGLEWK-RA------------KWGR----------P-AKKYLKFSEKLAVKYADRLIAD 160 (185)
T ss_pred HHHhhhh-----cCCcEEECCCcchhh-hh------------hcCH----------H-HHHHHHHHHHHHHHhCCEEEEc
Confidence 4443321 367999999987751 10 0100 0 001112 225567899999999
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMD 358 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd 358 (586)
|+...+.+.+. |+ ..+.++|++|.|
T Consensus 161 s~~I~~y~~~~--y~--------~~~s~~IaYGad 185 (185)
T PF09314_consen 161 SKGIQDYIKER--YG--------RKKSTFIAYGAD 185 (185)
T ss_pred CHHHHHHHHHH--cC--------CCCcEEecCCCC
Confidence 99999999963 44 127899999986
No 115
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=98.75 E-value=2.8e-07 Score=103.62 Aligned_cols=298 Identities=20% Similarity=0.224 Sum_probs=192.4
Q ss_pred CCCEEEEecCCccchHHHH-HHhhccCCCC-------CCCceEEEEEcCCcccc--ccCccccccc---------CCChh
Q 007873 227 GEDVVFVANDWHTSLIPCY-LKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLL---------NLPAQ 287 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~-l~~~~~~~~~-------~~~~pvv~~iH~~~~~~--~~~~~~~~~~---------~l~~~ 287 (586)
.+. +||.||-|++++..- ++......|+ ....-++||-|.+.+.+ .|+.+.+..+ ++..+
T Consensus 297 ~~~-~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~ 375 (794)
T TIGR02093 297 KKV-AIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRR 375 (794)
T ss_pred cce-EEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHH
Confidence 456 999999888775443 3322211111 23557899999886544 4555444321 11111
Q ss_pred hccccc--cccCCC-----CCc---CCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCc---cCCCcchhhhhccCeeEec
Q 007873 288 FKSSFD--FIDGYN-----KPV---RGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKGIV 354 (586)
Q Consensus 288 ~~~~~~--~~~~~~-----~~~---~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~---~~g~~~~~~~~~~~i~vI~ 354 (586)
|..... +....+ ..+ ....+++-..++..|..|..||+-..+.+.... .+.+= +.++.-+.
T Consensus 376 fl~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~df~~l~------P~kf~n~T 449 (794)
T TIGR02093 376 FLAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELY------PEKFNNKT 449 (794)
T ss_pred HHHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhC------CCccCCcC
Confidence 111000 000000 000 012355556677788999999987776655310 01111 23778899
Q ss_pred CCcccCCcC----CCCc----cccc-------------ccc-Cc----cccccccHHHHHHH----HHHhCCCCCCCCcE
Q 007873 355 NGMDVQEWN----PLTD----KYIG-------------VKY-DA----STVMDAKPLLKEAL----QAEVGLPVDRNIPV 404 (586)
Q Consensus 355 ngvd~~~~~----p~~~----~~~~-------------~~~-~~----~~~~~~~~~~~~~l----~~~~gl~~~~~~~~ 404 (586)
||+.+..|- |.-. ++|. .+| ++ ..+.+.|..+|..| +++.|...+++...
T Consensus 450 NGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slf 529 (794)
T TIGR02093 450 NGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIF 529 (794)
T ss_pred CCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccc
Confidence 999998885 2111 1111 112 22 22233444455544 56778888888899
Q ss_pred EEEEecCccccCHHH-HHHHHhh---ccc-C-----CeEEEEEeCCC------hhhHHHHHHHHHH------CCC--ceE
Q 007873 405 IGFIGRLEEQKGSDI-LAAAIPH---FIK-E-----NVQIIVLGTGK------KPMEKQLEQLEIL------YPE--KAR 460 (586)
Q Consensus 405 i~~iGrl~~~KG~d~-Ll~A~~~---l~~-~-----~v~lvIvG~g~------~~~~~~l~~l~~~------~~~--~v~ 460 (586)
++++-|+.++|...+ ++..+.. +.+ + +.++++.|+.. +...+.+.+++.. ..+ +|.
T Consensus 530 dvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVV 609 (794)
T TIGR02093 530 DVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVV 609 (794)
T ss_pred hhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEE
Confidence 999999999999999 6665544 433 2 67899999854 3445555555543 233 688
Q ss_pred EEeccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEccccccc
Q 007873 461 GVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDC 531 (586)
Q Consensus 461 ~~~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~~~~~~~ 531 (586)
+...++...+..++.+||+....|+ .|.+|..-+-+|..|.+.++|-.|...|+.++ ++|+|+||....++
T Consensus 610 FlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev 684 (794)
T TIGR02093 610 FVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEV 684 (794)
T ss_pred EeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHHH
Confidence 8999999999999999999999887 59999999999999999999999999999987 88999998655543
No 116
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.74 E-value=1.6e-06 Score=89.81 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=83.7
Q ss_pred CCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
...+++++|..+.. .++++++.+ ++.+++++|.... .....++. ...|+.+...++++.||++
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~--~~~~~~v~g~~~~----------~~~~~ni~-~~~~~~~~~~~~m~~ad~v 254 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKAL--PDYQFIVFGPNAA----------DPRPGNIH-VRPFSTPDFAELMAAADLV 254 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhC--CCCeEEEEcCCcc----------cccCCCEE-EeecChHHHHHHHHhCCEE
Confidence 44689999988777 667888876 5788888876631 11134565 4466667778899999999
Q ss_pred EEcCCCCCCcHH-HHHHHHcCCcEEEcCCcCccc------ccccCcceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 481 LIPSRFEPCGLI-QLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 481 l~PS~~E~~gl~-~lEAma~G~PvI~s~~gg~~e------~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
|. ..|.. +.||+++|+|+|+-...+..| .+++.+.|..+ ..+.-+++.|++.|+++
T Consensus 255 Is-----~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~--------~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 255 IS-----KGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL--------SQEDLTPERLAEFLERL 317 (318)
T ss_pred EE-----CCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc--------ccccCCHHHHHHHHhcC
Confidence 94 35666 999999999999998766444 33444555553 11344678888887754
No 117
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=98.73 E-value=1.3e-06 Score=97.35 Aligned_cols=288 Identities=19% Similarity=0.245 Sum_probs=164.6
Q ss_pred EEEEecCCccchHHHH-HHhhccCCCC-------CCCceEEEEEcCCcccc--ccCcccccccCCCh----------hhc
Q 007873 230 VVFVANDWHTSLIPCY-LKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPA----------QFK 289 (586)
Q Consensus 230 vii~~h~~~~~~~~~~-l~~~~~~~~~-------~~~~pvv~~iH~~~~~~--~~~~~~~~~~~l~~----------~~~ 289 (586)
++||.||-|++++..- ++......|+ ....-.+||.|.+-+.+ +|+.+.+..+ ||. +|.
T Consensus 216 ~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~-Lpr~~~ii~ein~~f~ 294 (713)
T PF00343_consen 216 VVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERY-LPRHLEIIYEINRRFL 294 (713)
T ss_dssp EEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHH-SHHHHHHHHHHHHHHH
T ss_pred eEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHH-ChHHHHHHHHHhHHHH
Confidence 4999999988875444 3333322332 12446799999987655 4554444321 111 111
Q ss_pred cc--------------cccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecC
Q 007873 290 SS--------------FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355 (586)
Q Consensus 290 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~n 355 (586)
.. +...+.. ....+++...++..|..+..||.-..+.+.+....... . +-+.++.-+.|
T Consensus 295 ~~~~~~~~~d~~~~~~l~ii~~~----~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~--~-l~P~kf~nvTN 367 (713)
T PF00343_consen 295 DELRRKYPGDEDQIRRLSIIEEG----NSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFY--E-LWPEKFGNVTN 367 (713)
T ss_dssp HHHHHHSTT-HHHHHHHSSEETS----SSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHH--H-HSGGGEEE---
T ss_pred HHHHHHhcCcchhhhhccccccc----chhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhh--h-cCCceeecccc
Confidence 10 0001000 11345666778889999999999887765542111110 1 12347999999
Q ss_pred CcccCCcCCCC--------cccccccc--Ccccc----------------ccccHHHH----HHHHHHhCCCCCCCCcEE
Q 007873 356 GMDVQEWNPLT--------DKYIGVKY--DASTV----------------MDAKPLLK----EALQAEVGLPVDRNIPVI 405 (586)
Q Consensus 356 gvd~~~~~p~~--------~~~~~~~~--~~~~~----------------~~~~~~~~----~~l~~~~gl~~~~~~~~i 405 (586)
||.+..|-... +++|.-.+ +++.+ .+.+..+| +.++++.|...+++...+
T Consensus 368 GVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfd 447 (713)
T PF00343_consen 368 GVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFD 447 (713)
T ss_dssp -B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEE
T ss_pred CccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhh
Confidence 99999984321 11222111 11111 01112223 334667787777888899
Q ss_pred EEEecCccccCHHHH-H---HHHhhccc------CCeEEEEEeCCCh------hhHHHHHHHHHH------CCC--ceEE
Q 007873 406 GFIGRLEEQKGSDIL-A---AAIPHFIK------ENVQIIVLGTGKK------PMEKQLEQLEIL------YPE--KARG 461 (586)
Q Consensus 406 ~~iGrl~~~KG~d~L-l---~A~~~l~~------~~v~lvIvG~g~~------~~~~~l~~l~~~------~~~--~v~~ 461 (586)
+++-|+.++|...+. + +-+.++++ .+++|+|.|+..+ ...+.+.+++.. ..+ +|.+
T Consensus 448 v~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvF 527 (713)
T PF00343_consen 448 VQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVF 527 (713)
T ss_dssp EEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEE
T ss_pred hhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEe
Confidence 999999999999883 3 44444443 3689999998542 344455555432 223 6889
Q ss_pred EeccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEc
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMG 525 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~ 525 (586)
...++...+..++.+||+.+..|+ .|.+|..-+-+|..|.+-+++-.|...|+.++ ..+.|+||
T Consensus 528 lenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG 595 (713)
T PF00343_consen 528 LENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFG 595 (713)
T ss_dssp ETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES
T ss_pred ecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcC
Confidence 999999999999999999999987 59999999999999999999999999999864 46899997
No 118
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.70 E-value=3e-06 Score=89.78 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=129.7
Q ss_pred hcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecC-CcccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN-GMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 315 ~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~n-gvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
+-|+..++.++..++.+.+ .|++.+ +|.++-| ++|.-.+.... .+..+.++
T Consensus 143 ~la~l~f~~t~~~~~~L~~---eg~~~~------~i~~tG~~~iD~l~~~~~~-------------------~~~~~~~~ 194 (365)
T TIGR03568 143 KLSHLHFVATEEYRQRVIQ---MGEDPD------RVFNVGSPGLDNILSLDLL-------------------SKEELEEK 194 (365)
T ss_pred HHHhhccCCCHHHHHHHHH---cCCCCC------cEEEECCcHHHHHHhhhcc-------------------CHHHHHHH
Confidence 4578899999999998886 566543 6766654 45543322111 14567778
Q ss_pred hCCCCCCCCcEEEEEecCc--c---ccCHHHHHHHHhhcccCCeEEEEE-e-CCChhhHHHHHHHHHHCCCceEEEeccC
Q 007873 394 VGLPVDRNIPVIGFIGRLE--E---QKGSDILAAAIPHFIKENVQIIVL-G-TGKKPMEKQLEQLEILYPEKARGVAKFN 466 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~--~---~KG~d~Ll~A~~~l~~~~v~lvIv-G-~g~~~~~~~l~~l~~~~~~~v~~~~~~~ 466 (586)
+|++.+. ..+++.+-+-. . .+.+..+++++..+. .++.++.- + .+.+...+.++++... ..++.......
T Consensus 195 lgl~~~~-~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~-~~~~vi~P~~~p~~~~i~~~i~~~~~~-~~~v~l~~~l~ 271 (365)
T TIGR03568 195 LGIDLDK-PYALVTFHPVTLEKESAEEQIKELLKALDELN-KNYIFTYPNADAGSRIINEAIEEYVNE-HPNFRLFKSLG 271 (365)
T ss_pred hCCCCCC-CEEEEEeCCCcccccCchHHHHHHHHHHHHhc-cCCEEEEeCCCCCchHHHHHHHHHhcC-CCCEEEECCCC
Confidence 8885322 24344444432 2 334556666665552 34533321 2 2223344555555322 23587777778
Q ss_pred hHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 467 ~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
-.+...+++.||++|--| .|.. .||.++|+|+|+ .+.-+|.+..|.+.+++ +.|++++.+++
T Consensus 272 ~~~~l~Ll~~a~~vitdS----Sggi-~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~v-----------g~~~~~I~~a~ 333 (365)
T TIGR03568 272 QERYLSLLKNADAVIGNS----SSGI-IEAPSFGVPTIN--IGTRQKGRLRADSVIDV-----------DPDKEEIVKAI 333 (365)
T ss_pred hHHHHHHHHhCCEEEEcC----hhHH-HhhhhcCCCEEe--ecCCchhhhhcCeEEEe-----------CCCHHHHHHHH
Confidence 888889999999999322 2333 899999999994 45688888888888864 56899999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007873 547 RRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 547 ~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 581 (586)
.++++ +..+..+.. ....|-....++++.+
T Consensus 334 ~~~~~---~~~~~~~~~--~~~pygdg~as~rI~~ 363 (365)
T TIGR03568 334 EKLLD---PAFKKSLKN--VKNPYGDGNSSERIIE 363 (365)
T ss_pred HHHhC---hHHHHHHhh--CCCCCCCChHHHHHHH
Confidence 99543 332222211 1234655556666554
No 119
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.61 E-value=6.3e-06 Score=85.59 Aligned_cols=294 Identities=17% Similarity=0.189 Sum_probs=162.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||++=-.. +| ...+...+...|.++||+|.|.+..++...+-.+ .-|++.
T Consensus 1 MkIwiDi~~-p~------hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~----------------------~yg~~y 51 (335)
T PF04007_consen 1 MKIWIDITH-PA------HVHFFKNIIRELEKRGHEVLITARDKDETEELLD----------------------LYGIDY 51 (335)
T ss_pred CeEEEECCC-ch------HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH----------------------HcCCCe
Confidence 888887654 33 3568888999999999999999988765433211 114444
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
..+.. .|..+++ +.........++.+... +++|| ++.++....+.-.+
T Consensus 52 ~~iG~----------~g~~~~~------------Kl~~~~~R~~~l~~~~~---------~~~pD-v~is~~s~~a~~va 99 (335)
T PF04007_consen 52 IVIGK----------HGDSLYG------------KLLESIERQYKLLKLIK---------KFKPD-VAISFGSPEAARVA 99 (335)
T ss_pred EEEcC----------CCCCHHH------------HHHHHHHHHHHHHHHHH---------hhCCC-EEEecCcHHHHHHH
Confidence 43321 1112221 12122233333333332 24799 55554322222111
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeC
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS 324 (586)
++ .++|.|....+-.. . .-.+-.+..||.++++.
T Consensus 100 ~~----------lgiP~I~f~D~e~a-~-----------------------------------~~~~Lt~Pla~~i~~P~ 133 (335)
T PF04007_consen 100 FG----------LGIPSIVFNDTEHA-I-----------------------------------AQNRLTLPLADVIITPE 133 (335)
T ss_pred HH----------hCCCeEEEecCchh-h-----------------------------------ccceeehhcCCeeECCc
Confidence 11 38899988774211 0 00111245689998877
Q ss_pred HHHHHHHhcCccCCCcchhhhhccCeeEe-cCCcccCC----cCCCCccccccccCccccccccHHHHHHHHHHhCCCCC
Q 007873 325 PHYAQELVSGEDKGVELDNIIRKTGIKGI-VNGMDVQE----WNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 399 (586)
Q Consensus 325 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI-~ngvd~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~ 399 (586)
-.-...+.. +|.. + .+. +||++... |.|. ..+.+++|+..
T Consensus 134 ~~~~~~~~~---~G~~-~--------~i~~y~G~~E~ayl~~F~Pd----------------------~~vl~~lg~~~- 178 (335)
T PF04007_consen 134 AIPKEFLKR---FGAK-N--------QIRTYNGYKELAYLHPFKPD----------------------PEVLKELGLDD- 178 (335)
T ss_pred ccCHHHHHh---cCCc-C--------CEEEECCeeeEEeecCCCCC----------------------hhHHHHcCCCC-
Confidence 654444443 4433 1 233 67776433 4443 45688899652
Q ss_pred CCCcEEEEEecCccccC------HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChH--HHH
Q 007873 400 RNIPVIGFIGRLEEQKG------SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP--LAH 471 (586)
Q Consensus 400 ~~~~~i~~iGrl~~~KG------~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~--~~~ 471 (586)
.+.|+. |.++.+- -+.+-+.++.|.+..-.+|++-...+ + .++.++++ + ....+ ..+
T Consensus 179 --~~yIvv--R~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~--~---~~~~~~~~--~----~i~~~~vd~~ 243 (335)
T PF04007_consen 179 --EPYIVV--RPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED--Q---RELFEKYG--V----IIPPEPVDGL 243 (335)
T ss_pred --CCEEEE--EeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc--h---hhHHhccC--c----cccCCCCCHH
Confidence 245542 5544332 23345566666553222666654331 1 12223332 1 11111 234
Q ss_pred HHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc---CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHH
Q 007873 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (586)
Q Consensus 472 ~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g---g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ 548 (586)
.++..||++| -+-|.-..||...|+|.|.+..| +..+.+.+ .|+++ ...|++++.+.+.+
T Consensus 244 ~Ll~~a~l~I-----g~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~--~Gll~----------~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 244 DLLYYADLVI-----GGGGTMAREAALLGTPAISCFPGKLLAVDKYLIE--KGLLY----------HSTDPDEIVEYVRK 306 (335)
T ss_pred HHHHhcCEEE-----eCCcHHHHHHHHhCCCEEEecCCcchhHHHHHHH--CCCeE----------ecCCHHHHHHHHHH
Confidence 7999999999 35678899999999999997654 23344444 47776 78999999997776
Q ss_pred HHHh
Q 007873 549 ALAT 552 (586)
Q Consensus 549 ll~~ 552 (586)
.+..
T Consensus 307 ~~~~ 310 (335)
T PF04007_consen 307 NLGK 310 (335)
T ss_pred hhhc
Confidence 6654
No 120
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=4.2e-06 Score=86.39 Aligned_cols=297 Identities=14% Similarity=0.097 Sum_probs=169.2
Q ss_pred CcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH--HHHHhhccCCCCCCCceEEEEEcCCcc
Q 007873 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP--CYLKTMYKPKGMYKSAKVVFCIHNIAY 270 (586)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~--~~l~~~~~~~~~~~~~pvv~~iH~~~~ 270 (586)
|.+-..+...+.+...++.+.+-.+ +|| ++.+-|.+..-+. ..+++.. +++|+|+.+-...+
T Consensus 60 f~EVL~~lp~llk~~~~~~~~i~~~---------kpD-~~i~IDsPdFnl~vak~lrk~~------p~i~iihYV~PsVW 123 (381)
T COG0763 60 FVEVLGRLPRLLKIRRELVRYILAN---------KPD-VLILIDSPDFNLRVAKKLRKAG------PKIKIIHYVSPSVW 123 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---------CCC-EEEEeCCCCCchHHHHHHHHhC------CCCCeEEEECccee
Confidence 4555555555666666666654322 699 5555565544443 3344432 56888876652111
Q ss_pred ccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCe
Q 007873 271 QGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGI 350 (586)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i 350 (586)
-++-+......+..|+++++=|.-.+.+.+ .|++ .
T Consensus 124 ---------------------------------AWr~~Ra~~i~~~~D~lLailPFE~~~y~k---~g~~---------~ 158 (381)
T COG0763 124 ---------------------------------AWRPKRAVKIAKYVDHLLAILPFEPAFYDK---FGLP---------C 158 (381)
T ss_pred ---------------------------------eechhhHHHHHHHhhHeeeecCCCHHHHHh---cCCC---------e
Confidence 111233445567899999999988888886 4443 4
Q ss_pred eEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEec-Ccc-ccCHHHHHHHHhhc
Q 007873 351 KGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGR-LEE-QKGSDILAAAIPHF 427 (586)
Q Consensus 351 ~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGr-l~~-~KG~d~Ll~A~~~l 427 (586)
+.|=|.+ |.-.+.+ +++..++++|++.+. ..+.+..|. -++ .+-...+.+|++++
T Consensus 159 ~yVGHpl~d~i~~~~---------------------~r~~ar~~l~~~~~~-~~lalLPGSR~sEI~rl~~~f~~a~~~l 216 (381)
T COG0763 159 TYVGHPLADEIPLLP---------------------DREAAREKLGIDADE-KTLALLPGSRRSEIRRLLPPFVQAAQEL 216 (381)
T ss_pred EEeCChhhhhccccc---------------------cHHHHHHHhCCCCCC-CeEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 4444443 2211222 266789999998654 344555554 444 45577889999999
Q ss_pred cc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEE
Q 007873 428 IK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV 505 (586)
Q Consensus 428 ~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~ 505 (586)
.. ++.+|++--.... ++....+. .+.+. ........+...++.+..||+.+. .+|.+.||+|.+|+|.|+
T Consensus 217 ~~~~~~~~~vlp~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~aD~al~-----aSGT~tLE~aL~g~P~Vv 288 (381)
T COG0763 217 KARYPDLKFVLPLVNAK-YRRIIEEA-LKWEV-AGLSLILIDGEKRKAFAAADAALA-----ASGTATLEAALAGTPMVV 288 (381)
T ss_pred HhhCCCceEEEecCcHH-HHHHHHHH-hhccc-cCceEEecCchHHHHHHHhhHHHH-----hccHHHHHHHHhCCCEEE
Confidence 75 7999998665442 23333222 22221 112334456677789999999885 579999999999999998
Q ss_pred cC-CcCccccccc-----Cc---ceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhcC
Q 007873 506 AS-TGGLVDTVEE-----GF---TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG------MAQDL 570 (586)
Q Consensus 506 s~-~gg~~e~v~~-----g~---~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~------~~~~f 570 (586)
+- +..+.-.+.. .. --++.|.+.++==.-+.-.++.+++++..++.+ ...++++.+.. +..+.
T Consensus 289 ~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~--~~~~~~~~~~~~~l~~~l~~~~ 366 (381)
T COG0763 289 AYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLN--GDRREALKEKFRELHQYLREDP 366 (381)
T ss_pred EEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcC--hHhHHHHHHHHHHHHHHHcCCc
Confidence 74 3332221110 00 001111111110001334689999999999998 43444443333 22333
Q ss_pred CHHHHHHHHHHH
Q 007873 571 SWKVSIGTVQEE 582 (586)
Q Consensus 571 sw~~~a~~~~~~ 582 (586)
.-+..++..++.
T Consensus 367 ~~e~aA~~vl~~ 378 (381)
T COG0763 367 ASEIAAQAVLEL 378 (381)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 121
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.55 E-value=3.1e-05 Score=79.00 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=71.7
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEE-EEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~l-vIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
.+++++|..+..+....+++++.++. .++++ +|+|.+.+ ..+.+++.....+ ++.. .-..+.+.++|+.||++|
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~-~~~~l~~~~~~~~-~i~~--~~~~~~m~~lm~~aDl~I 246 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNP-NLDELKKFAKEYP-NIIL--FIDVENMAELMNEADLAI 246 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCc-CHHHHHHHHHhCC-CEEE--EeCHHHHHHHHHHCCEEE
Confidence 57899999998887888999998763 34443 37787654 3456677665544 4542 234566778999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCC
Q 007873 482 IPSRFEPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (586)
.+ .|.++.|++++|+|+|+-..
T Consensus 247 s~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 247 GA-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred EC-----CchHHHHHHHcCCCEEEEEe
Confidence 73 77999999999999998764
No 122
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.53 E-value=6.4e-05 Score=80.58 Aligned_cols=207 Identities=15% Similarity=0.035 Sum_probs=121.6
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
-+.|+.|++..+...+.+.+ .|+ ++.++=|.+-.... +.. +
T Consensus 158 ~~~a~~v~~~~~~t~~~l~~---~g~---------k~~~vGnPv~d~l~-~~~--------------------~------ 198 (396)
T TIGR03492 158 SRRCLAVFVRDRLTARDLRR---QGV---------RASYLGNPMMDGLE-PPE--------------------R------ 198 (396)
T ss_pred chhhCEEeCCCHHHHHHHHH---CCC---------eEEEeCcCHHhcCc-ccc--------------------c------
Confidence 35799999999988888874 333 45566565422211 100 0
Q ss_pred hCCCCCCCCcEEEEEecC--ccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCc------------
Q 007873 394 VGLPVDRNIPVIGFIGRL--EEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEK------------ 458 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl--~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~------------ 458 (586)
.+++.+. ..++++.|.- +-.+++..+++++..+.+ ++++|++.-.+.. ..+.+++...+.+..
T Consensus 199 ~~l~~~~-~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~ 276 (396)
T TIGR03492 199 KPLLTGR-FRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL-SLEKLQAILEDLGWQLEGSSEDQTSLF 276 (396)
T ss_pred cccCCCC-CEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-CHHHHHHHHHhcCceecCCccccchhh
Confidence 0333221 2344555554 235678899999999965 5888876432222 123333333322211
Q ss_pred ----eEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcc---cccccC----cceEEEccc
Q 007873 459 ----ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV---DTVEEG----FTGFQMGSF 527 (586)
Q Consensus 459 ----v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~---e~v~~g----~~G~~~~~~ 527 (586)
+... .+ ......+++.||++|.. .|.+..|++++|+|+|.....+-. .+.+.. ..++.
T Consensus 277 ~~~~~~v~-~~-~~~~~~~l~~ADlvI~r-----SGt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~---- 345 (396)
T TIGR03492 277 QKGTLEVL-LG-RGAFAEILHWADLGIAM-----AGTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVF---- 345 (396)
T ss_pred ccCceEEE-ec-hHhHHHHHHhCCEEEEC-----cCHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEe----
Confidence 2211 22 23467899999999976 567779999999999998743321 112220 12222
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHH
Q 007873 528 SVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQ 580 (586)
Q Consensus 528 ~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~ 580 (586)
+...|++.+++.+.+++++ ++.+++|.++.. .+...-+.+++.+.
T Consensus 346 ------l~~~~~~~l~~~l~~ll~d--~~~~~~~~~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 346 ------LASKNPEQAAQVVRQLLAD--PELLERCRRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred ------cCCCCHHHHHHHHHHHHcC--HHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 2567889999999999998 777777764332 23344555555443
No 123
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.47 E-value=4.8e-05 Score=81.57 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=81.4
Q ss_pred CcEEEEEecCcc---ccCHHHHHHHHhhcccCCeEEE-EEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 402 IPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 402 ~~~i~~iGrl~~---~KG~d~Ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
.++++..|.... .+-...+++|+..+ +.+++ .+|..... . ...++++......+. ..++..|
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---~~~~i~~~g~~~~~--~------~~~~~~v~~~~~~p~---~~ll~~~ 305 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGWGGLG--A------EDLPDNVRVVDFVPH---DWLLPRC 305 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHHc---CCeEEEEccCcccc--c------cCCCCceEEeCCCCH---HHHhhhh
Confidence 467778888753 44556667777665 45544 45544311 1 234456665544432 3578999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHHH
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 551 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll~ 551 (586)
|++|. -+-..++.||+++|+|+|+....+ ..+.+.+...|... +.. +++++++++.++++
T Consensus 306 d~~I~----hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l----------~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 306 AAVVH----HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPAL----------DPRELTAERLAAALRRLLD 371 (401)
T ss_pred heeee----cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCC----------CcccCCHHHHHHHHHHHhC
Confidence 99993 333488999999999999997654 34455555567654 443 78999999999998
Q ss_pred h
Q 007873 552 T 552 (586)
Q Consensus 552 ~ 552 (586)
+
T Consensus 372 ~ 372 (401)
T cd03784 372 P 372 (401)
T ss_pred H
Confidence 5
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.40 E-value=4.8e-06 Score=75.14 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=28.3
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
|||+++.... .++.+++.+|.++||+|.++++..
T Consensus 1 KIl~i~~~~~---------~~~~~~~~~L~~~g~~V~ii~~~~ 34 (139)
T PF13477_consen 1 KILLIGNTPS---------TFIYNLAKELKKRGYDVHIITPRN 34 (139)
T ss_pred CEEEEecCcH---------HHHHHHHHHHHHCCCEEEEEEcCC
Confidence 6889987632 367899999999999999999963
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.37 E-value=4.3e-05 Score=80.32 Aligned_cols=251 Identities=14% Similarity=0.132 Sum_probs=137.7
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
+||+|++.=|-.+++.++..... .++| |.++|.-...+... .+.++
T Consensus 67 ~Pd~Vlv~GD~~~~la~alaA~~-------~~ip-v~HieaGlRs~d~~------~g~~d-------------------- 112 (346)
T PF02350_consen 67 KPDAVLVLGDRNEALAAALAAFY-------LNIP-VAHIEAGLRSGDRT------EGMPD-------------------- 112 (346)
T ss_dssp T-SEEEEETTSHHHHHHHHHHHH-------TT-E-EEEES-----S-TT------SSTTH--------------------
T ss_pred CCCEEEEEcCCchHHHHHHHHHH-------hCCC-EEEecCCCCccccC------CCCch--------------------
Confidence 59976666677777766665554 4899 55566421100000 01222
Q ss_pred hhhhhHHh-hcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCC-cccCCcCCCCccccccccCccccccccH
Q 007873 307 INWMKAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (586)
Q Consensus 307 ~~~~~~~~-~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ng-vd~~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (586)
...|..+ +-|+..++.++..++.+.+ .|++.+ +|.++=|- +|.-......
T Consensus 113 -e~~R~~i~~la~lhf~~t~~~~~~L~~---~G~~~~------rI~~vG~~~~D~l~~~~~~------------------ 164 (346)
T PF02350_consen 113 -EINRHAIDKLAHLHFAPTEEARERLLQ---EGEPPE------RIFVVGNPGIDALLQNKEE------------------ 164 (346)
T ss_dssp -HHHHHHHHHH-SEEEESSHHHHHHHHH---TT--GG------GEEE---HHHHHHHHHHHT------------------
T ss_pred -hhhhhhhhhhhhhhccCCHHHHHHHHh---cCCCCC------eEEEEChHHHHHHHHhHHH------------------
Confidence 2233333 4699999999999999997 688766 77777553 3322111000
Q ss_pred HHHHHH-HHHhCCCCCCCCcEEEEEecCcc---ccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCce
Q 007873 385 LLKEAL-QAEVGLPVDRNIPVIGFIGRLEE---QKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKA 459 (586)
Q Consensus 385 ~~~~~l-~~~~gl~~~~~~~~i~~iGrl~~---~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v 459 (586)
..+.+ ....... .++..+++..-|.+. ......+.+++..+.+ +++++++.....+.....+.+...++ .++
T Consensus 165 -~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v 241 (346)
T PF02350_consen 165 -IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNV 241 (346)
T ss_dssp -TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTE
T ss_pred -HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCE
Confidence 00000 1111001 123344555544432 3446677777777766 58999988875555666666666666 378
Q ss_pred EEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcCcccccccCcceEEEccccccccCCCCCC
Q 007873 460 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVD 538 (586)
Q Consensus 460 ~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d 538 (586)
.............+++.|+++|- ..|.++-||..+|+|+|.-. .|--.+.+..+.+-+ + +.|
T Consensus 242 ~~~~~l~~~~~l~ll~~a~~vvg-----dSsGI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v-----------~~~ 304 (346)
T PF02350_consen 242 RLIEPLGYEEYLSLLKNADLVVG-----DSSGIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-V-----------GTD 304 (346)
T ss_dssp EEE----HHHHHHHHHHESEEEE-----SSHHHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-E-----------TSS
T ss_pred EEECCCCHHHHHHHHhcceEEEE-----cCccHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-e-----------CCC
Confidence 88878788888889999999983 45644449999999999995 455566666555444 5 389
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Q 007873 539 VAAVSTTVRRALATYGTQALAEM 561 (586)
Q Consensus 539 ~~~la~~I~~ll~~~~~~~~~~~ 561 (586)
++++.++|.+++++ ...+..+
T Consensus 305 ~~~I~~ai~~~l~~--~~~~~~~ 325 (346)
T PF02350_consen 305 PEAIIQAIEKALSD--KDFYRKL 325 (346)
T ss_dssp HHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHhC--hHHHHhh
Confidence 99999999999986 4444444
No 126
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.36 E-value=0.00025 Score=78.22 Aligned_cols=225 Identities=14% Similarity=0.122 Sum_probs=128.4
Q ss_pred hhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHH
Q 007873 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 309 ~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
..+..-+..|.+++.=|...+.+.+ .|+ +++.+=|.+ |. ..+.. ++
T Consensus 354 Rikki~k~vD~ll~IfPFE~~~y~~---~gv---------~v~yVGHPL~d~--i~~~~-------------------~~ 400 (608)
T PRK01021 354 RKTILEKYLDLLLLILPFEQNLFKD---SPL---------RTVYLGHPLVET--ISSFS-------------------PN 400 (608)
T ss_pred hHHHHHHHhhhheecCccCHHHHHh---cCC---------CeEEECCcHHhh--cccCC-------------------CH
Confidence 3445556789999999988888775 455 345555543 22 11111 14
Q ss_pred HHHHHHhCCCCCCCCcEEEEEe-cCcc-ccCHHHHHHHHh--hcccCCeEEEEEeCCChhhHHHHHHHHHHCCC-ceEEE
Q 007873 388 EALQAEVGLPVDRNIPVIGFIG-RLEE-QKGSDILAAAIP--HFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGV 462 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iG-rl~~-~KG~d~Ll~A~~--~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~-~v~~~ 462 (586)
+++++++|++.+. ..+-+..| |-.| .+....+++|+. .+. ++.++++..... ..++.+++.....+. .+.
T Consensus 401 ~~~r~~lgl~~~~-~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~a~~-~~~~~i~~~~~~~~~~~~~-- 475 (608)
T PRK01021 401 LSWKEQLHLPSDK-PIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSSANP-KYDHLILEVLQQEGCLHSH-- 475 (608)
T ss_pred HHHHHHcCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEecCch-hhHHHHHHHHhhcCCCCeE--
Confidence 5678889996443 23345555 4545 556788899998 654 468887754332 234555555433220 122
Q ss_pred eccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcCccccccc-------Ccce---EEEccccccc
Q 007873 463 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEE-------GFTG---FQMGSFSVDC 531 (586)
Q Consensus 463 ~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~-------g~~G---~~~~~~~~~~ 531 (586)
...+...+++++.||+.+. .+|.+.+|++.+|+|.|+.- .+.+.-.+.. ..-| ++.|...+ .
T Consensus 476 -ii~~~~~~~~m~aaD~aLa-----aSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~Vv-P 548 (608)
T PRK01021 476 -IVPSQFRYELMRECDCALA-----KCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIF-P 548 (608)
T ss_pred -EecCcchHHHHHhcCeeee-----cCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcc-h
Confidence 1122224689999999996 46999999999999998864 3322221110 0000 01111100 2
Q ss_pred cCC---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HhcCCHHHHHHHHHH
Q 007873 532 EAV---DPVDVAAVSTTVRRALATYGTQALAEMMKNGM-------AQDLSWKVSIGTVQE 581 (586)
Q Consensus 532 ~~v---~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~-------~~~fsw~~~a~~~~~ 581 (586)
+.+ +..+++.+++.+ +++.+ ++.++++.++.. ...-+.++..+.+.+
T Consensus 549 EllqgQ~~~tpe~La~~l-~lL~d--~~~r~~~~~~l~~lr~~Lg~~~~~~~~~~~~~~~ 605 (608)
T PRK01021 549 EFIGGKKDFQPEEVAAAL-DILKT--SQSKEKQKDACRDLYQAMNESASTMKECLSLIFE 605 (608)
T ss_pred hhcCCcccCCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 233 466899999996 88877 555655555542 134455555554443
No 127
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.32 E-value=0.00015 Score=76.50 Aligned_cols=312 Identities=19% Similarity=0.148 Sum_probs=174.1
Q ss_pred HhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceEEEEcCccccccccCCCCCccc
Q 007873 106 VLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIY 185 (586)
Q Consensus 106 ~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~~~y 185 (586)
+..+|.++|.++.-++.++.-..++... .|+..++ +...+ .+-
T Consensus 13 ~ga~Li~~Lk~~~p~~~~~GvGG~~M~~--------------------------~G~~~l~-d~~~l----------svm 55 (373)
T PF02684_consen 13 HGARLIRALKARDPDIEFYGVGGPRMQA--------------------------AGVESLF-DMEEL----------SVM 55 (373)
T ss_pred HHHHHHHHHHhhCCCcEEEEEechHHHh--------------------------CCCceec-chHHh----------hhc
Confidence 6677999999998788877655433222 1333332 11111 111
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH--HHHHhhccCCCCCCCceEEE
Q 007873 186 GPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP--CYLKTMYKPKGMYKSAKVVF 263 (586)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~--~~l~~~~~~~~~~~~~pvv~ 263 (586)
| +.+-..++..+.+...++.+.+..+ +|| +++.=|++..-+. ..+++.. ..+|+++
T Consensus 56 G------~~Evl~~l~~~~~~~~~~~~~~~~~---------~pd-~vIlID~pgFNlrlak~lk~~~------~~~~viy 113 (373)
T PF02684_consen 56 G------FVEVLKKLPKLKRLFRKLVERIKEE---------KPD-VVILIDYPGFNLRLAKKLKKRG------IPIKVIY 113 (373)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHHHHc---------CCC-EEEEeCCCCccHHHHHHHHHhC------CCceEEE
Confidence 1 5555666666666555555544322 699 5555576654443 3344331 2344777
Q ss_pred EEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchh
Q 007873 264 CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDN 343 (586)
Q Consensus 264 ~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~ 343 (586)
.+-.. - |+ +.-...+..-+..|.++++=|.-.+.+.+ .|+
T Consensus 114 YI~Pq---v-WA-----------------------------Wr~~R~~~i~~~~D~ll~ifPFE~~~y~~---~g~---- 153 (373)
T PF02684_consen 114 YISPQ---V-WA-----------------------------WRPGRAKKIKKYVDHLLVIFPFEPEFYKK---HGV---- 153 (373)
T ss_pred EECCc---e-ee-----------------------------eCccHHHHHHHHHhheeECCcccHHHHhc---cCC----
Confidence 65421 1 10 11133444556789999999988888775 454
Q ss_pred hhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEE-EEEe-cCcccc-CHHHH
Q 007873 344 IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI-GFIG-RLEEQK-GSDIL 420 (586)
Q Consensus 344 ~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i-~~iG-rl~~~K-G~d~L 420 (586)
+++.+=|.+= +...+.. .+...++.+ ++.+ .++| +..| |-.+.+ .+..+
T Consensus 154 -----~~~~VGHPl~-d~~~~~~-------------------~~~~~~~~~-l~~~--~~iIaLLPGSR~~EI~rllP~~ 205 (373)
T PF02684_consen 154 -----PVTYVGHPLL-DEVKPEP-------------------DRAEAREKL-LDPD--KPIIALLPGSRKSEIKRLLPIF 205 (373)
T ss_pred -----CeEEECCcch-hhhccCC-------------------CHHHHHHhc-CCCC--CcEEEEeCCCCHHHHHHHHHHH
Confidence 3555555431 1111111 134445555 6543 3544 4454 455544 45889
Q ss_pred HHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHH
Q 007873 421 AAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMR 498 (586)
Q Consensus 421 l~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma 498 (586)
++++.++.+ +++++++..... ...+.+++.....+.++... .......+.++.||+.+. ..|.+.+|++.
T Consensus 206 l~aa~~l~~~~p~l~fvvp~a~~-~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~m~~ad~al~-----~SGTaTLE~Al 277 (373)
T PF02684_consen 206 LEAAKLLKKQRPDLQFVVPVAPE-VHEELIEEILAEYPPDVSIV--IIEGESYDAMAAADAALA-----ASGTATLEAAL 277 (373)
T ss_pred HHHHHHHHHhCCCeEEEEecCCH-HHHHHHHHHHHhhCCCCeEE--EcCCchHHHHHhCcchhh-----cCCHHHHHHHH
Confidence 999999976 799999876544 24444555555444333222 222345569999999986 46999999999
Q ss_pred cCCcEEEcC-CcCccccc-----ccCcce---EEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 499 YGTVPIVAS-TGGLVDTV-----EEGFTG---FQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 499 ~G~PvI~s~-~gg~~e~v-----~~g~~G---~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|+|.|+.- ++.+.-.+ +-..-| ++.|...+.==..+..+++.+++.+.+++.+
T Consensus 278 ~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 278 LGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN 340 (373)
T ss_pred hCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC
Confidence 999998775 33222211 110001 0111111110012456899999999999998
No 128
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=0.0005 Score=72.04 Aligned_cols=211 Identities=18% Similarity=0.110 Sum_probs=138.0
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHH
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (586)
-.+.+..+...|.|++.|+..++++.+ .|.. ++.+.-| ........ ......
T Consensus 168 ~~~~~~~~~~i~li~aQse~D~~Rf~~---LGa~--------~v~v~GN---lKfd~~~~--------------~~~~~~ 219 (419)
T COG1519 168 KFLARLLFKNIDLILAQSEEDAQRFRS---LGAK--------PVVVTGN---LKFDIEPP--------------PQLAAE 219 (419)
T ss_pred HHHHHHHHHhcceeeecCHHHHHHHHh---cCCc--------ceEEecc---eeecCCCC--------------hhhHHH
Confidence 355577788999999999999999997 6655 3333333 22111111 122334
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEec
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 464 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~ 464 (586)
...++..++.+ .++++..+. +..--+.++++.+.+++ ++..++++=.-++ --+.++++..+.+-.+...-.
T Consensus 220 ~~~~r~~l~~~----r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRHpE-Rf~~v~~l~~~~gl~~~~rS~ 292 (419)
T COG1519 220 LAALRRQLGGH----RPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRHPE-RFKAVENLLKRKGLSVTRRSQ 292 (419)
T ss_pred HHHHHHhcCCC----CceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCChh-hHHHHHHHHHHcCCeEEeecC
Confidence 56677777753 368888887 33345568889988877 6788887776554 345566666655422221111
Q ss_pred c-------------ChHHHHHHHHhccEEEEcCC-CCCCcHHHHHHHHcCCcEEEcC-CcCccc---ccccCcceEEEcc
Q 007873 465 F-------------NIPLAHMIIAGADFILIPSR-FEPCGLIQLHAMRYGTVPIVAS-TGGLVD---TVEEGFTGFQMGS 526 (586)
Q Consensus 465 ~-------------~~~~~~~~l~~aDi~l~PS~-~E~~gl~~lEAma~G~PvI~s~-~gg~~e---~v~~g~~G~~~~~ 526 (586)
- .--++..+|..||+.++--. .+-=|=-++|+.++|+|||.-. +--..| -+...+.|+.+
T Consensus 293 ~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v-- 370 (419)
T COG1519 293 GDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQV-- 370 (419)
T ss_pred CCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEE--
Confidence 1 01245569999999877644 4455667999999999999875 223333 33344567765
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007873 527 FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 566 (586)
Q Consensus 527 ~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 566 (586)
+|.+.+++.+..++++ +..+++|++++.
T Consensus 371 ----------~~~~~l~~~v~~l~~~--~~~r~~~~~~~~ 398 (419)
T COG1519 371 ----------EDADLLAKAVELLLAD--EDKREAYGRAGL 398 (419)
T ss_pred ----------CCHHHHHHHHHHhcCC--HHHHHHHHHHHH
Confidence 5688888888888887 888889988874
No 129
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.01 E-value=0.0063 Score=67.38 Aligned_cols=123 Identities=12% Similarity=0.025 Sum_probs=81.1
Q ss_pred CcEEEEEecCcc-----ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHH--
Q 007873 402 IPVIGFIGRLEE-----QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII-- 474 (586)
Q Consensus 402 ~~~i~~iGrl~~-----~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l-- 474 (586)
.++++..|.... .+-+..+++|+..+ +.++++..++.. .. ...+.|+....+++.. ++|
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---~~~viw~~~~~~--~~------~~~p~Nv~i~~w~Pq~---~lL~h 362 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---PYNVLWKYDGEV--EA------INLPANVLTQKWFPQR---AVLKH 362 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC---CCeEEEEECCCc--Cc------ccCCCceEEecCCCHH---HHhcC
Confidence 367777788642 33456677777776 357766554431 10 2345677766555553 367
Q ss_pred HhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCC--CCHHHHHHHHHH
Q 007873 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDP--VDVAAVSTTVRR 548 (586)
Q Consensus 475 ~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~--~d~~~la~~I~~ 548 (586)
..++++|. -+=..++.||+.+|+|+|+-...+ ....+.+-+.|... +. -+.+++.++|.+
T Consensus 363 p~v~~fIt----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l----------~~~~~t~~~l~~ai~~ 428 (507)
T PHA03392 363 KNVKAFVT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRAL----------DTVTVSAAQLVLAIVD 428 (507)
T ss_pred CCCCEEEe----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEe----------ccCCcCHHHHHHHHHH
Confidence 45888883 344567999999999999986543 44455555677765 33 367999999999
Q ss_pred HHHh
Q 007873 549 ALAT 552 (586)
Q Consensus 549 ll~~ 552 (586)
++++
T Consensus 429 vl~~ 432 (507)
T PHA03392 429 VIEN 432 (507)
T ss_pred HhCC
Confidence 9987
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.00 E-value=0.0015 Score=65.58 Aligned_cols=184 Identities=19% Similarity=0.220 Sum_probs=111.0
Q ss_pred HhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 313 ~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
.+..||.+++++....+++.. +|-.+.++..-..+.-+.| ...|.|. .++.+
T Consensus 123 ~~Pla~~ii~P~~~~~~~~~~---~G~~p~~i~~~~giae~~~---v~~f~pd----------------------~evlk 174 (346)
T COG1817 123 TLPLADVIITPEAIDEEELLD---FGADPNKISGYNGIAELAN---VYGFVPD----------------------PEVLK 174 (346)
T ss_pred chhhhhheecccccchHHHHH---hCCCccceecccceeEEee---cccCCCC----------------------HHHHH
Confidence 366799999999888887775 5655543333223333322 3335554 35678
Q ss_pred HhCCCCCCCCcEEEEEe-----cCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccCh
Q 007873 393 EVGLPVDRNIPVIGFIG-----RLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iG-----rl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (586)
++|+..+ +..+++=.- -...+++++.+.++++.|.+.. +|++-... ..++.-+.+.+.+ ... ..
T Consensus 175 eLgl~~~-~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g--iV~ipr~~-----~~~eife~~~n~i--~pk-~~ 243 (346)
T COG1817 175 ELGLEEG-ETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG--IVLIPREK-----EQAEIFEGYRNII--IPK-KA 243 (346)
T ss_pred HcCCCCC-CceEEEeeccccceeeccccchhhHHHHHHHHHhCc--EEEecCch-----hHHHHHhhhcccc--CCc-cc
Confidence 8999754 233333221 1235778888999999996533 44444322 2333333333111 000 11
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc---CcccccccCcceEEEccccccccCCCCCCHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVST 544 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g---g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~ 544 (586)
-+..+++-.|++++ -+-|.-.-||...|+|.|+..-| +..+...+ .|.++ ...|+.+..+
T Consensus 244 vD~l~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pGkll~vdk~lie--~G~~~----------~s~~~~~~~~ 306 (346)
T COG1817 244 VDTLSLLYYATLVI-----GAGGTMAREAALLGTPAISCYPGKLLAVDKYLIE--KGLLY----------HSTDEIAIVE 306 (346)
T ss_pred ccHHHHHhhhheee-----cCCchHHHHHHHhCCceEEecCCccccccHHHHh--cCcee----------ecCCHHHHHH
Confidence 11224777788887 45667788999999999999844 23334443 67776 7778888888
Q ss_pred HHHHHHHh
Q 007873 545 TVRRALAT 552 (586)
Q Consensus 545 ~I~~ll~~ 552 (586)
.+.+.+.+
T Consensus 307 ~a~~~l~~ 314 (346)
T COG1817 307 YAVRNLKY 314 (346)
T ss_pred HHHHHhhc
Confidence 88888866
No 131
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.93 E-value=0.0012 Score=68.80 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=74.1
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
.+++|.|. -+...+++++.++ +++.+++ |+... .. ..++.++... .|..+.+..+++.||++|.
T Consensus 190 ~iLv~~g~----~~~~~l~~~l~~~--~~~~~i~-~~~~~-~~-------~~~~~~v~~~-~~~~~~~~~~l~~ad~vI~ 253 (321)
T TIGR00661 190 YILVYIGF----EYRYKILELLGKI--ANVKFVC-YSYEV-AK-------NSYNENVEIR-RITTDNFKELIKNAELVIT 253 (321)
T ss_pred cEEEECCc----CCHHHHHHHHHhC--CCeEEEE-eCCCC-Cc-------cccCCCEEEE-ECChHHHHHHHHhCCEEEE
Confidence 35555443 3456777887766 4555544 43221 11 1234456655 4554667789999999997
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCCcCccc------ccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e------~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-+= ..++.||+++|+|+|.....+..| .+.+...|..+ +..+. ++.+++.+.+++
T Consensus 254 ~~G----~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l----------~~~~~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 254 HGG----FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIAL----------EYKEL-RLLEAILDIRNM 314 (321)
T ss_pred CCC----hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEc----------ChhhH-HHHHHHHhcccc
Confidence 542 246899999999999998766444 35556677765 66666 444455444444
No 132
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.011 Score=61.75 Aligned_cols=200 Identities=17% Similarity=0.109 Sum_probs=129.9
Q ss_pred hcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 315 ~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
.-||.-++.++..++.|.+ -|++.+ +|.++=|-+ |.-.+.-. +..........
T Consensus 144 ~~S~~hfapte~ar~nLl~---EG~~~~------~IfvtGnt~iDal~~~~~-----------------~~~~~~~~~~~ 197 (383)
T COG0381 144 HLSDLHFAPTEIARKNLLR---EGVPEK------RIFVTGNTVIDALLNTRD-----------------RVLEDSKILAK 197 (383)
T ss_pred HhhhhhcCChHHHHHHHHH---cCCCcc------ceEEeCChHHHHHHHHHh-----------------hhccchhhHHh
Confidence 3589999999999999996 677755 788887754 32222100 00001112222
Q ss_pred -hCCCCCCCCcEEEEEecCccc-cCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccCh
Q 007873 394 -VGLPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNI 467 (586)
Q Consensus 394 -~gl~~~~~~~~i~~iGrl~~~-KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~ 467 (586)
++.. .++.+++..-|-+-. +++..+++++.++.+ ++++++.-=...+ ..+++.. ..++ .++..+-.+.-
T Consensus 198 ~~~~~--~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~-~v~e~~~--~~L~~~~~v~li~pl~~ 272 (383)
T COG0381 198 GLDDK--DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRP-RVRELVL--KRLKNVERVKLIDPLGY 272 (383)
T ss_pred hhccc--cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCCh-hhhHHHH--HHhCCCCcEEEeCCcch
Confidence 2222 233566666666544 899999999988876 5677665443322 2222221 2233 25777777777
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC-cCcccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
...+.++..|-+++ -..|..+=||-..|+||++-+. -.-+|.+..| +-.+ -..|.+.+.+.+
T Consensus 273 ~~f~~L~~~a~~il-----tDSGgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~l-----------vg~~~~~i~~~~ 335 (383)
T COG0381 273 LDFHNLMKNAFLIL-----TDSGGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNIL-----------VGTDEENILDAA 335 (383)
T ss_pred HHHHHHHHhceEEE-----ecCCchhhhHHhcCCcEEeeccCCCCccceecC-ceEE-----------eCccHHHHHHHH
Confidence 77888999997666 3568889999999999998864 4456665544 4444 356889999999
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 007873 547 RRALATYGTQALAEMMKN 564 (586)
Q Consensus 547 ~~ll~~~~~~~~~~~~~~ 564 (586)
..++++ ++.+++|+..
T Consensus 336 ~~ll~~--~~~~~~m~~~ 351 (383)
T COG0381 336 TELLED--EEFYERMSNA 351 (383)
T ss_pred HHHhhC--hHHHHHHhcc
Confidence 999998 7777777664
No 133
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.58 E-value=0.0027 Score=68.47 Aligned_cols=179 Identities=13% Similarity=-0.013 Sum_probs=101.6
Q ss_pred HHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC---CceEEEecc
Q 007873 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP---EKARGVAKF 465 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~---~~v~~~~~~ 465 (586)
|+.+|||.+. |+|..--...|=.+..+++..++.+ |+-.|++...+.. .++.+++...+.+ +++.+...-
T Consensus 276 R~~~gLp~d~----vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~~~~l~~~~~~~Gv~~~Ri~f~~~~ 350 (468)
T PF13844_consen 276 RAQYGLPEDA----VVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-GEARLRRRFAAHGVDPDRIIFSPVA 350 (468)
T ss_dssp TGGGT--SSS----EEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-HHHHHHHHHHHTTS-GGGEEEEE--
T ss_pred HHHcCCCCCc----eEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-HHHHHHHHHHHcCCChhhEEEcCCC
Confidence 7889998543 4444444456777777777777766 8999988765442 4566666666655 367665544
Q ss_pred ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHH
Q 007873 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTT 545 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~ 545 (586)
..++-...+..+|++|=|.- =+-+.+.+||+.+|+|||+-....+..=+.. +++ -+..|...-..|.+++.+.
T Consensus 351 ~~~ehl~~~~~~DI~LDT~p-~nG~TTt~dALwmGVPvVTl~G~~~~sR~~a---SiL---~~lGl~ElIA~s~~eYv~~ 423 (468)
T PF13844_consen 351 PREEHLRRYQLADICLDTFP-YNGGTTTLDALWMGVPVVTLPGETMASRVGA---SIL---RALGLPELIADSEEEYVEI 423 (468)
T ss_dssp -HHHHHHHGGG-SEEE--SS-S--SHHHHHHHHHT--EEB---SSGGGSHHH---HHH---HHHT-GGGB-SSHHHHHHH
T ss_pred CHHHHHHHhhhCCEEeeCCC-CCCcHHHHHHHHcCCCEEeccCCCchhHHHH---HHH---HHcCCchhcCCCHHHHHHH
Confidence 55555567899999997643 2347889999999999998874433322111 000 0111111234689999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHH-----HhcCCHHHHHHHHHHHh
Q 007873 546 VRRALATYGTQALAEMMKNGM-----AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 546 I~~ll~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~~ 583 (586)
-.++.++ ++.++++++.-. ..-|+-+..++.+++.+
T Consensus 424 Av~La~D--~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~ 464 (468)
T PF13844_consen 424 AVRLATD--PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAY 464 (468)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHH
T ss_pred HHHHhCC--HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 9999998 666666655542 24588888888887754
No 134
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.50 E-value=0.0013 Score=61.45 Aligned_cols=130 Identities=19% Similarity=0.270 Sum_probs=71.5
Q ss_pred CcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecC-CccchHHHHHHhhccCCCCCCCceEEEEEcCCccc
Q 007873 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAND-WHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQ 271 (586)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~-~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~ 271 (586)
|...++.-..-.+++.++++.|+.+ .|.|| ||++|. |-. +++++..+ +++|++..+= .+|.
T Consensus 39 ~~~~~e~~~~rg~av~~a~~~L~~~-------Gf~PD-vI~~H~GWGe---~Lflkdv~------P~a~li~Y~E-~~y~ 100 (171)
T PF12000_consen 39 YVRDFEAAVLRGQAVARAARQLRAQ-------GFVPD-VIIAHPGWGE---TLFLKDVF------PDAPLIGYFE-FYYR 100 (171)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHc-------CCCCC-EEEEcCCcch---hhhHHHhC------CCCcEEEEEE-EEec
Confidence 4445555555566666666666532 46799 777775 543 45677665 7888875431 1111
Q ss_pred cccCcccccccCCChhhccccccccCCCCCcCCcchhhh-hHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCe
Q 007873 272 GRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWM-KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGI 350 (586)
Q Consensus 272 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i 350 (586)
. .-...+.+.++..+. ......+..|.. ...+..+|..++.|.+.++.+-... ..+|
T Consensus 101 ~-----~g~d~~FDpe~p~~~------~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~fP~~~-----------r~kI 158 (171)
T PF12000_consen 101 A-----SGADVGFDPEFPPSL------DDRARLRMRNAHNLLALEQADAGISPTRWQRSQFPAEF-----------RSKI 158 (171)
T ss_pred C-----CCCcCCCCCCCCCCH------HHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhCCHHH-----------HcCc
Confidence 1 111112111111100 000001112222 3456689999999999988876421 2499
Q ss_pred eEecCCcccCCc
Q 007873 351 KGIVNGMDVQEW 362 (586)
Q Consensus 351 ~vI~ngvd~~~~ 362 (586)
.||+-|||++.+
T Consensus 159 ~VihdGiDt~~~ 170 (171)
T PF12000_consen 159 SVIHDGIDTDRF 170 (171)
T ss_pred EEeecccchhhc
Confidence 999999998754
No 135
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.43 E-value=0.01 Score=63.93 Aligned_cols=153 Identities=15% Similarity=0.154 Sum_probs=94.2
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
++.+..|..... .+.+-.++..+.+-++++++...+.+ .. ....+.|+.-...++.. .++..||++|.
T Consensus 239 ~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~---~~----~~~~p~n~~v~~~~p~~---~~l~~ad~vI~ 306 (406)
T COG1819 239 IVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGAR---DT----LVNVPDNVIVADYVPQL---ELLPRADAVIH 306 (406)
T ss_pred eEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEeccccc---cc----cccCCCceEEecCCCHH---HHhhhcCEEEe
Confidence 455666766655 44444444444445888887764421 01 12344556545444443 38999999996
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHH
Q 007873 483 PSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 558 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~ 558 (586)
. +=-.+..||+.+|+|+|+-..+. ..+-+++-..|... ..+..+++.++++|+++|++ +...
T Consensus 307 h----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l--------~~~~l~~~~l~~av~~vL~~--~~~~ 372 (406)
T COG1819 307 H----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIAL--------PFEELTEERLRAAVNEVLAD--DSYR 372 (406)
T ss_pred c----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceec--------CcccCCHHHHHHHHHHHhcC--HHHH
Confidence 4 33457889999999998876542 45566777888775 12368899999999999997 3322
Q ss_pred HHHHH--HHHHhcCCHHHHHHHHHH
Q 007873 559 AEMMK--NGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 559 ~~~~~--~~~~~~fsw~~~a~~~~~ 581 (586)
+...+ +.+.+.-.-+.+++.+++
T Consensus 373 ~~~~~~~~~~~~~~g~~~~a~~le~ 397 (406)
T COG1819 373 RAAERLAEEFKEEDGPAKAADLLEE 397 (406)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHH
Confidence 22211 223445555555555544
No 136
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.33 E-value=0.014 Score=59.28 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=87.9
Q ss_pred cEEEEEecC-ccccCHHHHHHHHhhcccCCeEEEE-EeC--CChhhHHHHHHHHHHCC--CceEEEecc-ChHHHHHHHH
Q 007873 403 PVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIV-LGT--GKKPMEKQLEQLEILYP--EKARGVAKF-NIPLAHMIIA 475 (586)
Q Consensus 403 ~~i~~iGrl-~~~KG~d~Ll~A~~~l~~~~v~lvI-vG~--g~~~~~~~l~~l~~~~~--~~v~~~~~~-~~~~~~~~l~ 475 (586)
++-+.+|+= ++..++...++++.+....++++++ .|- |.+.|.+++++.+.++- +++.....+ +-++..++++
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHH
Confidence 566667775 5778899999999888778899875 565 77889999988887643 366555555 4466678999
Q ss_pred hccEEEEcC-CCCCCcHHHHHHHHcCCcEEEcC-CcCcccccccCc
Q 007873 476 GADFILIPS-RFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGF 519 (586)
Q Consensus 476 ~aDi~l~PS-~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~ 519 (586)
.||+.++.- +.++.|+.++ .+..|+||+.+. +.-..++.+.|.
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~e~gv 270 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCL-LIQLGKPVVLSRDNPFWQDLTEQGL 270 (322)
T ss_pred hCCEEEEeechhhHHhHHHH-HHHCCCcEEEecCCchHHHHHhCCC
Confidence 999998876 5689999887 899999998885 555666555543
No 137
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.18 E-value=0.5 Score=51.12 Aligned_cols=211 Identities=14% Similarity=0.112 Sum_probs=110.4
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHH
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
.+++..++++|.|.+=-+...+.+.+ .|++.. ++.+.+ |+..--|.... +....
T Consensus 168 ~l~r~vl~~~~~ItvRD~~S~~~Lk~---lGv~~~------~v~~~a---DpAF~L~~~~~--------------~~~~~ 221 (426)
T PRK10017 168 QLANYVFGHCDALILRESVSLDLMKR---SNITTA------KVEHGV---DTAWLVDHHTE--------------DFTAS 221 (426)
T ss_pred HHHHHHHhcCCEEEEccHHHHHHHHH---hCCCcc------ceEEec---ChhhhCCcccc--------------ccccc
Confidence 44577789999988777777777765 666533 444433 44332221100 00000
Q ss_pred HHHHHHhCCCCCCCCcEEEEEec-Ccc-cc--------CHHHHHHHHhhcccCCeEEEEEeC--C----ChhhHHHHHHH
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGR-LEE-QK--------GSDILAAAIPHFIKENVQIIVLGT--G----KKPMEKQLEQL 451 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGr-l~~-~K--------G~d~Ll~A~~~l~~~~v~lvIvG~--g----~~~~~~~l~~l 451 (586)
..+....+.+. ..++|++.=| +.+ .| -...+.+++..+.+.+.+++++-. + .+......+++
T Consensus 222 ~~~~~~~~~~~--~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l 299 (426)
T PRK10017 222 YAVQHWLDVAA--QQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNL 299 (426)
T ss_pred hhhhhhhcccc--cCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHH
Confidence 01111122221 2356655533 321 11 124566677776655655554442 1 11122333455
Q ss_pred HHHCCCc--eEE-EeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC-ccccccc-CcceEEEcc
Q 007873 452 EILYPEK--ARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG-LVDTVEE-GFTGFQMGS 526 (586)
Q Consensus 452 ~~~~~~~--v~~-~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg-~~e~v~~-g~~G~~~~~ 526 (586)
...++.. ... ...++..++..+++.||++|-.-.+ ..+=|++.|+|+|+-.... ...+..+ |...+++
T Consensus 300 ~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~-- 372 (426)
T PRK10017 300 RQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH-----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAI-- 372 (426)
T ss_pred HHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch-----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEe--
Confidence 5554321 221 2235666777899999998864443 3455899999999887421 2222221 1122222
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 007873 527 FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 561 (586)
Q Consensus 527 ~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 561 (586)
.++.-++++|.+.+.+++++ .+.+++.
T Consensus 373 ------~~~~l~~~~Li~~v~~~~~~--r~~~~~~ 399 (426)
T PRK10017 373 ------DIRHLLDGSLQAMVADTLGQ--LPALNAR 399 (426)
T ss_pred ------chhhCCHHHHHHHHHHHHhC--HHHHHHH
Confidence 13556788999999999998 5554433
No 138
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.16 E-value=0.011 Score=62.69 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=97.0
Q ss_pred hhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHH
Q 007873 310 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEA 389 (586)
Q Consensus 310 ~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (586)
........|.+++.|+...+.+.+ .+|.+.+ .++..|..-. |.. ........+.
T Consensus 128 ~~~~~~~~d~~~~~s~~~~~~~~~--~f~~~~~--------~i~~~G~PR~------D~l----------~~~~~~~~~~ 181 (369)
T PF04464_consen 128 YKRNYRNYDYFIVSSEFEKEIFKK--AFGYPED--------KILVTGYPRN------DYL----------FNKSKENRNR 181 (369)
T ss_dssp HHHHHTT-SEEEESSHHHHHHHHH--HTT--GG--------GEEES--GGG------HHH----------HHSTT-HHHH
T ss_pred hhhhccCCcEEEECCHHHHHHHHH--HhccCcc--------eEEEeCCCeE------hHH----------hccCHHHHHH
Confidence 445567899999999999988885 3666543 2344454211 100 0111112567
Q ss_pred HHHHhCCCCCCCCcEEEEEecCccccCH------H--HHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEE
Q 007873 390 LQAEVGLPVDRNIPVIGFIGRLEEQKGS------D--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 461 (586)
Q Consensus 390 l~~~~gl~~~~~~~~i~~iGrl~~~KG~------d--~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~ 461 (586)
+++.++++. ++.+|+|.-.+...... . .-.+.+..+.+.++.+++-.-.. ........ .....++..
T Consensus 182 i~~~~~~~~--~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~Hp~--~~~~~~~~-~~~~~~i~~ 256 (369)
T PF04464_consen 182 IKKKLGIDK--DKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPHPN--MKKKFKDF-KEDNSNIIF 256 (369)
T ss_dssp HHHHTT--S--S-EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--SHH--HHTT-----TT-TTTEEE
T ss_pred HHHHhccCC--CCcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeCch--hhhchhhh-hccCCcEEE
Confidence 788888864 44699998665443332 1 12333334445788887765321 22222221 122334543
Q ss_pred EeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEc--CC-------cCcccccccCcceEEEcccccccc
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA--ST-------GGLVDTVEEGFTGFQMGSFSVDCE 532 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s--~~-------gg~~e~v~~g~~G~~~~~~~~~~~ 532 (586)
.. +.+.+.+++..||++| --++-+++|++.+++|||.- |. |...+ ..+..-|-.+
T Consensus 257 ~~--~~~~~~~ll~~aDiLI-----TDySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~-------- 320 (369)
T PF04464_consen 257 VS--DNEDIYDLLAAADILI-----TDYSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIV-------- 320 (369)
T ss_dssp -T--T-S-HHHHHHT-SEEE-----ESS-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EE--------
T ss_pred CC--CCCCHHHHHHhcCEEE-----EechhHHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCcee--------
Confidence 32 2335778999999999 35778999999999999954 33 22222 2223334443
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q 007873 533 AVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 533 ~v~~~d~~~la~~I~~ll~~ 552 (586)
.+.++|.+.|..++++
T Consensus 321 ----~~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 321 ----YNFEELIEAIENIIEN 336 (369)
T ss_dssp ----SSHHHHHHHHTTHHHH
T ss_pred ----CCHHHHHHHHHhhhhC
Confidence 7899999999999887
No 139
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.07 E-value=0.27 Score=50.83 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=98.6
Q ss_pred cEEEEEecC-ccccCHHHHHHHHhhcccCCeEEEE-EeCC--ChhhHHHHHHHHHHC-C-CceEEEecc-ChHHHHHHHH
Q 007873 403 PVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIV-LGTG--KKPMEKQLEQLEILY-P-EKARGVAKF-NIPLAHMIIA 475 (586)
Q Consensus 403 ~~i~~iGrl-~~~KG~d~Ll~A~~~l~~~~v~lvI-vG~g--~~~~~~~l~~l~~~~-~-~~v~~~~~~-~~~~~~~~l~ 475 (586)
+.-+.+|+= ++.-+....++++.+...+++++++ .|-| .++|.+++.+.+.++ + +++.....+ +-++..++++
T Consensus 185 ~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~ 264 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLS 264 (360)
T ss_pred ceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHH
Confidence 555666764 5777788899988886567888776 5555 467888888888875 3 245544444 5567778999
Q ss_pred hccEEEEcCC-CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 476 GADFILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 476 ~aDi~l~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
.||+.+++.. .++.|+.++ .+.+|+||+.+....+-..+.+..--+++ ..+.-|.+.+.++=+++..
T Consensus 265 ~cDl~if~~~RQQgiGnI~l-Ll~~G~~v~L~~~np~~~~l~~~~ipVlf--------~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 265 RCDLGIFNHNRQQGIGNICL-LLQLGKKVFLSRDNPFWQDLKEQGIPVLF--------YGDELDEALVREAQRQLAN 332 (360)
T ss_pred hCCEEEEeechhhhHhHHHH-HHHcCCeEEEecCChHHHHHHhCCCeEEe--------ccccCCHHHHHHHHHHHhh
Confidence 9999999975 689999888 89999999998866665555554333443 1245566666666555554
No 140
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.01 E-value=0.091 Score=55.18 Aligned_cols=91 Identities=19% Similarity=0.111 Sum_probs=59.3
Q ss_pred cEEEEEecCc-c-ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 403 PVIGFIGRLE-E-QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 403 ~~i~~iGrl~-~-~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.+.++.|.=. + .+-+..+++++.++.+...++++.|... . +.+++...+.. .+... + ...++++.||+.
T Consensus 169 ~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~--~-~~i~~~~~~~~-~~~~~---~--~~~~~m~~aDla 239 (347)
T PRK14089 169 TIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK--G-KDLKEIYGDIS-EFEIS---Y--DTHKALLEAEFA 239 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc--H-HHHHHHHhcCC-CcEEe---c--cHHHHHHhhhHH
Confidence 3445555542 2 3456667799999876557788887654 2 34444333221 12211 1 345799999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
+. ..|.+.+|++.+|+|.|..-
T Consensus 240 l~-----~SGT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 240 FI-----CSGTATLEAALIGTPFVLAY 261 (347)
T ss_pred Hh-----cCcHHHHHHHHhCCCEEEEE
Confidence 85 46899999999999998864
No 141
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.01 E-value=0.003 Score=67.51 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
.|| +||.|...+++++.++.... ++|.+++-|.+..+. +..+++.+-.+..++.-+ ..
T Consensus 401 ~Pd-lI~GnYsDgnlvA~LLs~~l-------gv~~~~iaHsLek~K-y~~s~~~w~e~e~~Yhfs-------------~q 458 (550)
T PF00862_consen 401 KPD-LIIGNYSDGNLVASLLSRKL-------GVTQCFIAHSLEKTK-YEDSDLYWKEIEEKYHFS-------------CQ 458 (550)
T ss_dssp --S-EEEEEHHHHHHHHHHHHHHH-------T-EEEEE-SS-HHHH-HHTTTTTSHHHHHHH-HH-------------HH
T ss_pred CCc-EEEeccCcchHHHHHHHhhc-------CCceehhhhcccccc-ccccCCCHHHHHhhccch-------------hh
Confidence 599 99999988899998888874 999999999886422 111111111111111111 12
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHH
Q 007873 307 INWMKAGILESDMVLTVSPHYAQ 329 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~ 329 (586)
+.....+++.||.|||-+.+-..
T Consensus 459 ftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 459 FTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHH
T ss_pred hhHHHHHhhcCCEEEEcchHhhc
Confidence 33345678899999998876544
No 142
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=96.94 E-value=0.023 Score=60.70 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=87.4
Q ss_pred CcEEEEEecCccccC--HHHHHHHHhhcccCCeEEE-EEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 402 IPVIGFIGRLEEQKG--SDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG--~d~Ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
.++++..|.....+. ++.+++++.. .+++++ .+|.+.. ...++ ..+.++......+. ..+++.||
T Consensus 226 ~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~g~~~~--~~~~~----~~~~~v~~~~~~p~---~~ll~~~~ 293 (392)
T TIGR01426 226 PVVLISLGTVFNNQPSFYRTCVEAFRD---LDWHVVLSVGRGVD--PADLG----ELPPNVEVRQWVPQ---LEILKKAD 293 (392)
T ss_pred CEEEEecCccCCCCHHHHHHHHHHHhc---CCCeEEEEECCCCC--hhHhc----cCCCCeEEeCCCCH---HHHHhhCC
Confidence 356677788643322 2334444443 355554 4565542 12222 23455655544443 25899999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcC
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 554 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~ 554 (586)
++|..+= ..+++||+++|+|+|+....+ ..+.+.+...|..+. -..-++++++++|++++++
T Consensus 294 ~~I~hgG----~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~--------~~~~~~~~l~~ai~~~l~~-- 359 (392)
T TIGR01426 294 AFITHGG----MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLP--------PEEVTAEKLREAVLAVLSD-- 359 (392)
T ss_pred EEEECCC----chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEec--------cccCCHHHHHHHHHHHhcC--
Confidence 9996432 247899999999999976443 333455556676540 0233689999999999987
Q ss_pred HHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 007873 555 TQAL---AEMMKNGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 555 ~~~~---~~~~~~~~~~~fsw~~~a~~~~~ 581 (586)
++.. +++.+. +...-.-+..++.+++
T Consensus 360 ~~~~~~~~~l~~~-~~~~~~~~~aa~~i~~ 388 (392)
T TIGR01426 360 PRYAERLRKMRAE-IREAGGARRAADEIEG 388 (392)
T ss_pred HHHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Confidence 4422 233322 2233355555555544
No 143
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.91 E-value=0.15 Score=50.29 Aligned_cols=192 Identities=19% Similarity=0.239 Sum_probs=104.6
Q ss_pred CCCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCc
Q 007873 226 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 305 (586)
Q Consensus 226 ~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (586)
+.|| ++.+-...++.+..++++.+ .++++|-..|. + +|
T Consensus 69 ~~Pd-l~I~aGrrta~l~~~lkk~~------~~~~vVqI~~P-----r----------lp-------------------- 106 (329)
T COG3660 69 QRPD-LIITAGRRTAPLAFYLKKKF------GGIKVVQIQDP-----R----------LP-------------------- 106 (329)
T ss_pred CCCc-eEEecccchhHHHHHHHHhc------CCceEEEeeCC-----C----------CC--------------------
Confidence 4699 66666888999999999886 46566655552 1 11
Q ss_pred chhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHH
Q 007873 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385 (586)
Q Consensus 306 ~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~ 385 (586)
....|.|+..-.++.++... .|.+ ++ .+.+.+|-+..+...+
T Consensus 107 --------~~~fDlvivp~HD~~~~~s~---~~~N---il---pi~Gs~h~Vt~~~lAa--------------------- 148 (329)
T COG3660 107 --------YNHFDLVIVPYHDWREELSD---QGPN---IL---PINGSPHNVTSQRLAA--------------------- 148 (329)
T ss_pred --------cccceEEeccchhhhhhhhc---cCCc---ee---eccCCCCcccHHHhhh---------------------
Confidence 33578888877777766332 1211 11 2333344443222111
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEecCccccCH--HHHHHHHhhccc----CCeEEEEEeCCChhhHHHHHHHHHH-CCCc
Q 007873 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGS--DILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEIL-YPEK 458 (586)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~--d~Ll~A~~~l~~----~~v~lvIvG~g~~~~~~~l~~l~~~-~~~~ 458 (586)
..++++....++ ...+-+++|.-.+.-.. |...+-+..+.+ ....|++--+-. -.+.++++... ++ .
T Consensus 149 ~~e~~~~~~p~~---rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR--Tp~~~~s~l~~~l~-s 222 (329)
T COG3660 149 LREAFKHLLPLP---RQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR--TPDTVKSILKNNLN-S 222 (329)
T ss_pred hHHHHHhhCCCC---CceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC--CcHHHHHHHHhccc-c
Confidence 233444433333 45788899987665544 333333333322 467777655432 22333333332 22 1
Q ss_pred eEEEeccCh-----HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 459 ARGVAKFNI-----PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 459 v~~~~~~~~-----~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
..+.+ ++. .=...+|+.||.++.+.-. =.-.-||.+.|+||.+--
T Consensus 223 ~~~i~-w~~~d~g~NPY~~~La~Adyii~TaDS---inM~sEAasTgkPv~~~~ 272 (329)
T COG3660 223 SPGIV-WNNEDTGYNPYIDMLAAADYIISTADS---INMCSEAASTGKPVFILE 272 (329)
T ss_pred CceeE-eCCCCCCCCchHHHHhhcceEEEecch---hhhhHHHhccCCCeEEEe
Confidence 11111 111 1234699999999987542 233579999999997654
No 144
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.03 Score=58.06 Aligned_cols=202 Identities=13% Similarity=0.093 Sum_probs=128.0
Q ss_pred CCEEEEeCHHH-HHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhC
Q 007873 317 SDMVLTVSPHY-AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (586)
Q Consensus 317 ad~vitvS~~~-~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 395 (586)
.|.|++.++.. ++.+.+ +.| ..+...++.++|...|.|.+..
T Consensus 139 fd~v~~~g~~l~~~~yyq--~~~--------~~~~~~~~~a~d~~~~~~i~~d--------------------------- 181 (373)
T COG4641 139 FDNVLSFGGGLVANKYYQ--EGG--------ARNCYYLPWAVDDSLFHPIPPD--------------------------- 181 (373)
T ss_pred hhhhhhccchHHHHHHHH--hhc--------ccceeccCccCCchhcccCCcc---------------------------
Confidence 45566667766 444332 011 1267888999999999886521
Q ss_pred CCCCCCCcEEEEEecCccccCHHHHHHHHhhccc-------CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccCh-
Q 007873 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-------ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI- 467 (586)
Q Consensus 396 l~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~-------~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~- 467 (586)
..-.--+.++|+-.+. ..+.++++.- .+-++.+.|..-. ...+... .-.++...++.+.
T Consensus 182 ---a~~~~dL~~ign~~pD-----r~e~~ke~~~~ps~kl~v~rr~~~~g~~y~--~~~~~~~---~~~~~~yIg~~~~~ 248 (373)
T COG4641 182 ---ASYDVDLNLIGNPYPD-----RVEEIKEFFVEPSFKLMVDRRFYVLGPRYP--DDIWGRT---WEPNVQYIGYYNPK 248 (373)
T ss_pred ---ccceeeeEEecCCCcc-----HHHHHHHHhhccchhhhccceeeecCCccc--hhhhccc---ccchhhhhhccCcc
Confidence 0011247888887765 3333333322 1345666776510 0011110 1112333344433
Q ss_pred HHHHHHHHhccEEEEcCCC---CC---CcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHH
Q 007873 468 PLAHMIIAGADFILIPSRF---EP---CGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 541 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~---E~---~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~ 541 (586)
...+..++.-|+.+.=++. ++ +.+-+.|+|+||.|.|++...++.-.+.+|..=++. .|..+
T Consensus 249 ~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~------------~d~kd 316 (373)
T COG4641 249 DGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVY------------QDSKD 316 (373)
T ss_pred chhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEe------------cCHHH
Confidence 4455677777777765553 22 378899999999999999999999999998766654 89999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHH
Q 007873 542 VSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEE 582 (586)
Q Consensus 542 la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~ 582 (586)
+.+.++.++.. +..++++.+.+. ...++.+.-+.+++++
T Consensus 317 l~~~~~yll~h--~~erkeiae~~ye~V~~~ht~~~r~~~~~~~ 358 (373)
T COG4641 317 LKEKLKYLLNH--PDERKEIAECAYERVLARHTYEERIFKLLNE 358 (373)
T ss_pred HHHHHHHHhcC--cchHHHHHHhhHHHHHHhccHHHHHHHHHHH
Confidence 99999999998 667778877774 3558888877666654
No 145
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.081 Score=60.44 Aligned_cols=263 Identities=20% Similarity=0.243 Sum_probs=162.8
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccc-cccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDF-GLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
.| +|..||++..++|-+++... ..+++-+..|...+ .... ..+ ..
T Consensus 141 ~d-~vwihdyhlmllp~~lr~~~------~~~~ig~flhspfp-----ssEi~r~l----------------------p~ 186 (732)
T KOG1050|consen 141 GD-IVWIHDYHLMLLPQMLRERF------NSAKIGFFLHSPFP-----SSEIYRCL----------------------PV 186 (732)
T ss_pred CC-cEEEEcchhhccchhhhccc------ccceEEEeccCCCC-----hHHHHHhc----------------------cc
Confidence 67 99999999999998888765 47788788885432 1110 110 01
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcch-----hhh----hccCeeEecCCcccCCcCCCCccccccccC
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD-----NII----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYD 375 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~~-----~~~----~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~ 375 (586)
.+-+-.++..+|.+=..+..++..+.+.+. .|++.. .++ +...+..+|-|+|+..+.-....
T Consensus 187 r~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~------- 259 (732)
T KOG1050|consen 187 RKEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLEL------- 259 (732)
T ss_pred HHHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccc-------
Confidence 122344566777777777766665554221 111111 000 12356667888888777433210
Q ss_pred ccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc------CCeEEEEEeCCC----hhhH
Q 007873 376 ASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----KPME 445 (586)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~------~~v~lvIvG~g~----~~~~ 445 (586)
..-..-..+++..+ .+..+|+-+-|+...||+-.=+.|+.++.. +.+.++.+..+. ++++
T Consensus 260 -----~~~~~~~~ei~~~~-----~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~ 329 (732)
T KOG1050|consen 260 -----PYVGSKGMEIKEPF-----KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVE 329 (732)
T ss_pred -----hhHHHHHHHHhhhc-----cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHH
Confidence 00011122333333 356789999999999999887788877765 356665555432 2222
Q ss_pred HH---HHHHHH----HCCC----ceE-EEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcC----CcEEEcCCc
Q 007873 446 KQ---LEQLEI----LYPE----KAR-GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG----TVPIVASTG 509 (586)
Q Consensus 446 ~~---l~~l~~----~~~~----~v~-~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G----~PvI~s~~g 509 (586)
+. +..... +++. .+. ..-.++..++-++++.+|+.++.+..++..++.+|...|. .+.|.+..-
T Consensus 330 ~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~ 409 (732)
T KOG1050|consen 330 ELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFI 409 (732)
T ss_pred HHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeec
Confidence 22 222222 2221 111 2222356777789999999999999999999999999873 667777777
Q ss_pred CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 510 GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 510 g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
|-.++.+++. .+ +.|.|.++++..|..+++..
T Consensus 410 G~~~tl~d~a--iv----------vnpw~~~~~~~~i~~al~~s 441 (732)
T KOG1050|consen 410 GDDTTLEDAA--IV----------VNPWDGDEFAILISKALTMS 441 (732)
T ss_pred cccccccccC--EE----------ECCcchHHHHHHHHHHhhcC
Confidence 7777776543 22 49999999999999999873
No 146
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.39 E-value=1.5 Score=45.41 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=74.9
Q ss_pred CcEEEEEecCcc-ccCHHHHHHHHhhccc-CCeEEEEEeCCC-hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 402 IPVIGFIGRLEE-QKGSDILAAAIPHFIK-ENVQIIVLGTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 402 ~~~i~~iGrl~~-~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~-~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
..+++.+|.-.. ..=++..++|...+.. ...-++|.|.-- ....+.+...+.+.+ ++. ...|..+ ..+++++|+
T Consensus 220 ~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p-~i~-I~~f~~~-~~~ll~gA~ 296 (400)
T COG4671 220 FDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRP-HIS-IFEFRND-FESLLAGAR 296 (400)
T ss_pred ceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCC-CeE-EEEhhhh-HHHHHHhhh
Confidence 356777775432 2223444555555433 222355666543 233344444444333 343 3345443 446999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCC--cCccccccc---CcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVAST--GGLVDTVEE---GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~--gg~~e~v~~---g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
..|.-+= =+++.|-+++|+|.+.-.. ++-..++.- .+-|++ |...-+.-.++.||++|..+++.
T Consensus 297 ~vVSm~G----YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~------dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 297 LVVSMGG----YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLV------DVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred eeeeccc----chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcc------eeeCcccCChHHHHHHHHhcccC
Confidence 9985322 2678899999999876653 332222221 123332 11122444589999999999874
No 147
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.13 Score=56.18 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=83.7
Q ss_pred HHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCC-hhhHHHHHHHHHHCC---CceEEEec
Q 007873 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK-KPMEKQLEQLEILYP---EKARGVAK 464 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~-~~~~~~l~~l~~~~~---~~v~~~~~ 464 (586)
|+.+|||++ .++|.+--...|-...+.+...++.+ |+-.|++.|.|+ +.....+++++++.+ .++++...
T Consensus 421 R~~lglp~~----avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 421 RAQLGLPED----AVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred hhhcCCCCC----eEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC
Confidence 678899854 35566666667776666666555544 888899888865 567889999998877 36777777
Q ss_pred cChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 465 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 465 ~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
-..+...+.+.-||+++=+.-+ +-..+.+||+.+|+|||+-.
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRV 538 (620)
T ss_pred CCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeeec
Confidence 6777777899999999955432 34577999999999998754
No 148
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=95.81 E-value=0.017 Score=58.34 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=36.9
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
|+|++|+.-.+|+ ..||++..+.+|.+.|-+.-..|..++++.
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 8999999888897 789999999999999977766777777764
No 149
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.77 E-value=0.48 Score=49.02 Aligned_cols=117 Identities=16% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCcccc--CHH---HHHHHHhhccc-CCeEEEEEeCC--ChhhHHHHHHHHHHCCCc
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQK--GSD---ILAAAIPHFIK-ENVQIIVLGTG--KKPMEKQLEQLEILYPEK 458 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~K--G~d---~Ll~A~~~l~~-~~v~lvIvG~g--~~~~~~~l~~l~~~~~~~ 458 (586)
..+++.+++-. +...+.+.+|.-.... +.+ .|++.+..+.+ ....+.|..+- +++.++.|+++....+ .
T Consensus 134 ~~~~~~~~~~l--~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~-~ 210 (311)
T PF06258_consen 134 AAAWAPRLAAL--PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNP-G 210 (311)
T ss_pred HHhhhhhhccC--CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCC-c
Confidence 33444554422 2335667888654333 333 56666666655 46788888874 3456666666664333 2
Q ss_pred eEEEecc-ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC
Q 007873 459 ARGVAKF-NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 459 v~~~~~~-~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg 510 (586)
+..+..- ..+ ...+|+.||.++++.- .-.=+.||.+.|+||.+-...+
T Consensus 211 ~~~~~~~~~nP-y~~~La~ad~i~VT~D---SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 211 VYIWDGTGENP-YLGFLAAADAIVVTED---SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred eEEecCCCCCc-HHHHHHhCCEEEEcCc---cHHHHHHHHHcCCCEEEecCCC
Confidence 3222111 223 4469999999999754 3445889999999998888766
No 150
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.37 E-value=1.5 Score=43.99 Aligned_cols=88 Identities=17% Similarity=0.280 Sum_probs=55.1
Q ss_pred EEEEEecCccccCHHHHHHHHhhcccCCeEEE-EEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
+++..|.-++ |+ +.++.++.|.+.++.+. ++|.+.+.+ +.+....++++ ++.. ..+.+.+..++..||+.+.
T Consensus 161 ilI~lGGsDp-k~--lt~kvl~~L~~~~~nl~iV~gs~~p~l-~~l~k~~~~~~-~i~~--~~~~~dma~LMke~d~aI~ 233 (318)
T COG3980 161 ILITLGGSDP-KN--LTLKVLAELEQKNVNLHIVVGSSNPTL-KNLRKRAEKYP-NINL--YIDTNDMAELMKEADLAIS 233 (318)
T ss_pred EEEEccCCCh-hh--hHHHHHHHhhccCeeEEEEecCCCcch-hHHHHHHhhCC-Ceee--EecchhHHHHHHhcchhee
Confidence 5666665444 33 33455555544445553 456555434 34445555555 2432 3355667789999999995
Q ss_pred cCCCCCCcHHHHHHHHcCCcE
Q 007873 483 PSRFEPCGLIQLHAMRYGTVP 503 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~Pv 503 (586)
.-|.++.||...|+|.
T Consensus 234 -----AaGstlyEa~~lgvP~ 249 (318)
T COG3980 234 -----AAGSTLYEALLLGVPS 249 (318)
T ss_pred -----ccchHHHHHHHhcCCc
Confidence 4689999999999993
No 151
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=94.81 E-value=0.15 Score=47.70 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.0
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhh
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNI 344 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~ 344 (586)
-..+|..++.|+..++++.+ +|++.+++
T Consensus 135 ~~~~D~y~Vase~~~~~l~~---~Gi~~~~I 162 (169)
T PF06925_consen 135 HPGVDRYFVASEEVKEELIE---RGIPPERI 162 (169)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCChhHE
Confidence 35799999999999999997 89997743
No 152
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.18 E-value=0.23 Score=41.90 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=59.0
Q ss_pred EEEEeCCChhhHHHHHHHHHHCCCceEEE---eccChHH--HHHHHHhccEEEEcCCC---CCCcHHHHHHHHcCCcEEE
Q 007873 434 IIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPL--AHMIIAGADFILIPSRF---EPCGLIQLHAMRYGTVPIV 505 (586)
Q Consensus 434 lvIvG~g~~~~~~~l~~l~~~~~~~v~~~---~~~~~~~--~~~~l~~aDi~l~PS~~---E~~gl~~lEAma~G~PvI~ 505 (586)
++|+|.-+ .+...++++.++++.....+ ..+.... ++..+..||++|++..+ ..+-.+--+|-..|+|++.
T Consensus 2 vliVGG~~-~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 2 VLIVGGRE-DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred EEEEcCCc-ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 56777522 26777888888888777777 4454444 78899999999999875 4456667788899999999
Q ss_pred cCCcCcccc
Q 007873 506 ASTGGLVDT 514 (586)
Q Consensus 506 s~~gg~~e~ 514 (586)
+...|+..+
T Consensus 81 ~~~~~~~~l 89 (97)
T PF10087_consen 81 SRSRGVSSL 89 (97)
T ss_pred ECCCCHHHH
Confidence 986665544
No 153
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.59 E-value=1.6 Score=45.57 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=70.3
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEec-CccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceE-EE
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGR-LEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKAR-GV 462 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGr-l~~~KG--~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~-~~ 462 (586)
...+..+++++.+ ...+++..|. ..+.|. .+...+.+..+.+.+.+++++|+.. ..+..+++....+.++. ..
T Consensus 161 ~~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~--e~~~~~~i~~~~~~~~~~l~ 237 (334)
T TIGR02195 161 QAAALAKFGLDTE-RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAK--DHPAGNEIEALLPGELRNLA 237 (334)
T ss_pred HHHHHHHcCCCCC-CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChh--hHHHHHHHHHhCCcccccCC
Confidence 3445566676432 2244455555 346665 4467777777765678999999765 23445555555543333 23
Q ss_pred eccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC
Q 007873 463 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 463 ~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (586)
+..+-.++..+++.||++|-.-. |. .==|.|.|+|+|+--.
T Consensus 238 g~~sL~el~ali~~a~l~I~~DS----Gp-~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTNDS----GL-MHVAAALNRPLVALYG 278 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEeeCC----HH-HHHHHHcCCCEEEEEC
Confidence 44566777889999999996432 22 2227799999987643
No 154
>PLN02448 UDP-glycosyltransferase family protein
Probab=92.55 E-value=1.7 Score=47.69 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=73.1
Q ss_pred CcEEEEEecCcc--ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 402 ~~~i~~iGrl~~--~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
..+.+..|.... ..-+..+++++... +..|+++..++. ..+.+. .+++.....+.++. ++|+.+++
T Consensus 275 ~vvyvsfGs~~~~~~~~~~~~~~~l~~~---~~~~lw~~~~~~---~~~~~~---~~~~~~v~~w~pQ~---~iL~h~~v 342 (459)
T PLN02448 275 SVLYVSLGSFLSVSSAQMDEIAAGLRDS---GVRFLWVARGEA---SRLKEI---CGDMGLVVPWCDQL---KVLCHSSV 342 (459)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHHhC---CCCEEEEEcCch---hhHhHh---ccCCEEEeccCCHH---HHhccCcc
Confidence 356677777642 22245555555544 667776655431 112221 22334333333332 37777776
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
..+-+. +=.++++||+++|+|+|+-...+ ....+.+. ..|+-+.. +.+.-..-+.+++++++++++.+
T Consensus 343 ~~fvtH--gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~---~~~~~~~~~~~~l~~av~~vl~~ 415 (459)
T PLN02448 343 GGFWTH--CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKR---EVGEETLVGREEIAELVKRFMDL 415 (459)
T ss_pred ceEEec--CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEec---ccccCCcCcHHHHHHHHHHHhcC
Confidence 332222 23467999999999999986543 44444442 45665410 00000124789999999999975
No 155
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=91.92 E-value=6.5 Score=41.33 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=65.0
Q ss_pred CcEEEEEecCccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCC-Cc-eEEEeccChHHHHHHHHhc
Q 007873 402 IPVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP-EK-ARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG--~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~-~~-v~~~~~~~~~~~~~~l~~a 477 (586)
..+++..|.-.+.|. .+...+.+..|.+.+.+++++|...+...+..+++..... .. +...+..+-.++..+++.|
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 263 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHA 263 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhC
Confidence 456677777667776 4467777777765678999887654322333445544322 12 2234445667788899999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (586)
|++|-.-. |..=+ |.|.|+|+|+--.+
T Consensus 264 ~l~v~nDS----Gp~Hl-AaA~g~P~v~lfGp 290 (352)
T PRK10422 264 QLFIGVDS----APAHI-AAAVNTPLICLFGA 290 (352)
T ss_pred CEEEecCC----HHHHH-HHHcCCCEEEEECC
Confidence 99995432 33222 77899999876533
No 156
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=90.94 E-value=11 Score=38.54 Aligned_cols=100 Identities=14% Similarity=-0.001 Sum_probs=60.0
Q ss_pred cEEEEEecCc---cccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 403 PVIGFIGRLE---EQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 403 ~~i~~iGrl~---~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
+.|++.-|-. ..+.++.+.+++..+.+ .+.+++++.-......+..+++...++.........+.++...+++.||
T Consensus 173 ~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~ 252 (298)
T TIGR03609 173 PVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASAR 252 (298)
T ss_pred CeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCC
Confidence 4566554432 22336677888888765 3666666553322234455566655543222223345667778999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
++|-...+ ..+=|+.+|+|+|+-.
T Consensus 253 ~vI~~RlH-----~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 253 LVIGMRLH-----ALILAAAAGVPFVALS 276 (298)
T ss_pred EEEEechH-----HHHHHHHcCCCEEEee
Confidence 87765543 3445899999999764
No 157
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=90.80 E-value=20 Score=36.16 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=76.8
Q ss_pred CcEE---EEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCC-hhhHHHHHH--------------HHHHCCCceEEE
Q 007873 402 IPVI---GFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK-KPMEKQLEQ--------------LEILYPEKARGV 462 (586)
Q Consensus 402 ~~~i---~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~-~~~~~~l~~--------------l~~~~~~~v~~~ 462 (586)
.+.. +|+||..-.||...+++.-++..+ ++..-++-|=.. ......++. .....+.-+...
T Consensus 180 e~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~ 259 (355)
T PF11440_consen 180 EKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVY 259 (355)
T ss_dssp GSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEE
T ss_pred hhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceec
Confidence 3455 899999999999999998887766 678888888432 112222211 000011124445
Q ss_pred eccChHHHHHHHHhccEEEEcCC------CCCCcHHHHHHHHcCCcEEEcC-CcCccc-------ccccCcceEEEcccc
Q 007873 463 AKFNIPLAHMIIAGADFILIPSR------FEPCGLIQLHAMRYGTVPIVAS-TGGLVD-------TVEEGFTGFQMGSFS 528 (586)
Q Consensus 463 ~~~~~~~~~~~l~~aDi~l~PS~------~E~~gl~~lEAma~G~PvI~s~-~gg~~e-------~v~~g~~G~~~~~~~ 528 (586)
+.+-.++....++.+-+...-+. .+..-.+.+|..|||+.+|--. +|..-. ++... .|.+.
T Consensus 260 ~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~-~~~I~---- 334 (355)
T PF11440_consen 260 GPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHP-YSAIY---- 334 (355)
T ss_dssp SS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS---S-EE----
T ss_pred chhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccC-cceeE----
Confidence 55666677778888887765543 3568899999999998776653 444333 22222 33332
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHh
Q 007873 529 VDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 529 ~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+.+|.++-.+.|.++.++
T Consensus 335 -----~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 335 -----FDENDLESTVEKLIEVANN 353 (355)
T ss_dssp -----E-TTSHHHHHHHHHHHHT-
T ss_pred -----eccchHHHHHHHHHHHhcc
Confidence 3888888888877777654
No 158
>PLN02562 UDP-glycosyltransferase
Probab=90.57 E-value=3.4 Score=45.18 Aligned_cols=130 Identities=8% Similarity=-0.030 Sum_probs=75.2
Q ss_pred CcEEEEEecCc---cccCHHHHHHHHhhcccCCeEEEE-EeCCCh-hhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh
Q 007873 402 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIV-LGTGKK-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 402 ~~~i~~iGrl~---~~KG~d~Ll~A~~~l~~~~v~lvI-vG~g~~-~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~ 476 (586)
..+++..|... ..+-+..++.++..+ ...|++ +..+.. ...+.+ .++.++++....+.++. .+|+.
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~---g~~fiW~~~~~~~~~l~~~~---~~~~~~~~~v~~w~PQ~---~iL~h 344 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEAS---GRPFIWVLNPVWREGLPPGY---VERVSKQGKVVSWAPQL---EVLKH 344 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHC---CCCEEEEEcCCchhhCCHHH---HHHhccCEEEEecCCHH---HHhCC
Confidence 35777888754 344566666666665 335443 433211 111111 12223445444333443 37777
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc----Cccccccc-CcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 477 aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~-g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
+++.++=+. +=-++.+||+.+|+|+|+.... .....+.+ -..|+-+ ...+.++++++|++++.
T Consensus 345 ~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~----------~~~~~~~l~~~v~~~l~ 412 (448)
T PLN02562 345 QAVGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRI----------SGFGQKEVEEGLRKVME 412 (448)
T ss_pred CccceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEe----------CCCCHHHHHHHHHHHhC
Confidence 765333232 2246799999999999987643 34455544 3566654 44678999999999997
Q ss_pred h
Q 007873 552 T 552 (586)
Q Consensus 552 ~ 552 (586)
+
T Consensus 413 ~ 413 (448)
T PLN02562 413 D 413 (448)
T ss_pred C
Confidence 6
No 159
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.38 E-value=6 Score=40.79 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=78.7
Q ss_pred cEEEEEecCccccCH--HHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 403 PVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~--d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.+++..|.=.+.|.. +...+.+..+.+.+.+++++|+++. ..+..+++....+. ....+..+-.++..+++.||++
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~-e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA-EKQRAERIAEALPG-AVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH-HHHHHHHHHhhCCC-CeecCCCCHHHHHHHHHcCCEE
Confidence 456677765566765 5677777777656788888865542 23344555555543 2334555667778899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcc--eEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFT--GFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~--G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
|-+-. |..=+ |.+.|+|+|+--.+.-+........ ..+. .| ..+.=+|+++.+++.++|
T Consensus 259 I~~DS----gp~Hl-Aaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~-----~~-~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 259 VGVDT----GLTHL-AAALDKPTVTLYGATDPGRTGGYGKPNVALL-----GE-SGANPTPDEVLAALEELL 319 (319)
T ss_pred EeCCC----hHHHH-HHHcCCCEEEEECCCCHhhcccCCCCceEEc-----cC-ccCCCCHHHHHHHHHhhC
Confidence 96432 22222 6788999998653332222211111 1111 11 135556777777776653
No 160
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=89.61 E-value=0.076 Score=49.42 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=49.6
Q ss_pred HHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC--------cccccccCcceEEEccccccccCCCCCCHH
Q 007873 469 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSVDCEAVDPVDVA 540 (586)
Q Consensus 469 ~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~ 540 (586)
.+..+++.||++|. =+=+.++.|++++|+|.|.-...+ ....+.+...|..+ .-...+++
T Consensus 65 ~m~~~m~~aDlvIs----~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~--------~~~~~~~~ 132 (167)
T PF04101_consen 65 NMAELMAAADLVIS----HAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIML--------DESELNPE 132 (167)
T ss_dssp SHHHHHHHHSEEEE----CS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCS--------ECCC-SCC
T ss_pred hHHHHHHHcCEEEe----CCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcccc--------CcccCCHH
Confidence 36789999998884 223478999999999998876555 22233333334432 01233478
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Q 007873 541 AVSTTVRRALATYGTQALAEMMKN 564 (586)
Q Consensus 541 ~la~~I~~ll~~~~~~~~~~~~~~ 564 (586)
.|.+.|..++++ ++...++.++
T Consensus 133 ~L~~~i~~l~~~--~~~~~~~~~~ 154 (167)
T PF04101_consen 133 ELAEAIEELLSD--PEKLKEMAKA 154 (167)
T ss_dssp CHHHHHHCHCCC--HH-SHHHCCC
T ss_pred HHHHHHHHHHcC--cHHHHHHHHH
Confidence 899999999987 6555555444
No 161
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=89.42 E-value=2.4 Score=42.95 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred EEEEEecCccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCC-CceE-EEeccChHHHHHHHHhccE
Q 007873 404 VIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP-EKAR-GVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 404 ~i~~iGrl~~~KG--~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~-~~v~-~~~~~~~~~~~~~l~~aDi 479 (586)
+++..|.-.+.|. .+...+.++.+.+.+++++++|... .++..+++....+ .++. ..+..+-.++..+++.||+
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~--e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPA--ERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechh--hHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 4555555555554 4678888888876689999998755 3444555555441 2222 2333455677789999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+|-+- .|..-+ |.+.|+|+|+--.+..++
T Consensus 202 ~I~~D----sg~~Hl-A~a~~~p~i~l~g~~~~~ 230 (279)
T cd03789 202 VVTND----SGPMHL-AAALGTPTVALFGPTDPA 230 (279)
T ss_pred EEeeC----CHHHHH-HHHcCCCEEEEECCCCcc
Confidence 99754 244444 569999998876544443
No 162
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=89.19 E-value=2.3 Score=39.44 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=25.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+++.+++ .|.-...+..|++.+ -|+++++|-.
T Consensus 1 M~ILlle~y~-----ggSHk~~~~~L~~~~---~~~~~lltLP 35 (168)
T PF12038_consen 1 MRILLLEPYY-----GGSHKQWADGLAAHS---EHEWTLLTLP 35 (168)
T ss_pred CeEEEEcccc-----ccCHHHHHHHHHHhc---cCCEEEEEcC
Confidence 8999999764 455555666666666 4888888853
No 163
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=88.75 E-value=2.8 Score=41.46 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=61.4
Q ss_pred CCcEEEEEecCccccCHHH--HHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCC-ceEEEeccChHHHHHHHHhc
Q 007873 401 NIPVIGFIGRLEEQKGSDI--LAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~--Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~-~v~~~~~~~~~~~~~~l~~a 477 (586)
+..+++..|.-.+.|.... ..+.+..+.+...+++++|...+..++..+++....+. .+...+..+-.++..+++.|
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a 184 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRA 184 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTS
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcC
Confidence 3456777777777887544 88888888765688999998764344555556554432 24444455667777899999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (586)
|++|-+-. |.. -=|.|.|+|+|+--.
T Consensus 185 ~~~I~~Dt----g~~-HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 185 DLVIGNDT----GPM-HLAAALGTPTVALFG 210 (247)
T ss_dssp SEEEEESS----HHH-HHHHHTT--EEEEES
T ss_pred CEEEecCC----hHH-HHHHHHhCCEEEEec
Confidence 99997532 333 237889999988743
No 164
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=88.21 E-value=7.2 Score=40.76 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=63.8
Q ss_pred cEEEEEecCccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCC-ceE-EEeccChHHHHHHHHhcc
Q 007873 403 PVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KAR-GVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 403 ~~i~~iGrl~~~KG--~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~-~v~-~~~~~~~~~~~~~l~~aD 478 (586)
.+++..|.-.+.|. .+...+.+..+.+.+.+++++|...+...+..+++....+. ++. ..+..+-.++..+++.||
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 262 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHAR 262 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCC
Confidence 45566666555565 45666777666556788999986543233344555444332 233 334456677888999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (586)
++|-+- .|..=+ |.|.|+|+|+--.+
T Consensus 263 l~Vs~D----SGp~Hl-AaA~g~p~v~Lfgp 288 (344)
T TIGR02201 263 LFIGVD----SVPMHM-AAALGTPLVALFGP 288 (344)
T ss_pred EEEecC----CHHHHH-HHHcCCCEEEEECC
Confidence 999642 233322 78999999986533
No 165
>PLN02173 UDP-glucosyl transferase family protein
Probab=88.07 E-value=6.8 Score=42.78 Aligned_cols=138 Identities=7% Similarity=0.049 Sum_probs=72.5
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEE
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
..+.+.+|.... -..+.+.+.+.-|...++-.++-.+......+.+.+.. .+.++....+.++. ++|+...+..
T Consensus 265 svvyvsfGS~~~-~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~--~~~~~~i~~W~PQ~---~iL~H~~v~~ 338 (449)
T PLN02173 265 SVVYIAFGSMAK-LSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETV--DKDKSLVLKWSPQL---QVLSNKAIGC 338 (449)
T ss_pred ceEEEEeccccc-CCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhh--cCCceEEeCCCCHH---HHhCCCccce
Confidence 356677787642 23445555555553334333332111111111111111 13345544443432 3787777544
Q ss_pred EcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 482 IPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 482 ~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-+. || ++++||+++|+|+|+-..-+ ....+.+. ..|+-+..- +.+ ..-+.++++++|++++.+
T Consensus 339 FvtH---cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~--~~~--~~~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 339 FMTH---CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAE--KES--GIAKREEIEFSIKEVMEG 408 (449)
T ss_pred EEec---CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeec--ccC--CcccHHHHHHHHHHHhcC
Confidence 4333 54 78999999999999986433 44455543 566654100 000 012789999999999975
No 166
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.21 E-value=12 Score=39.00 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=70.0
Q ss_pred cEEEEEe-cCccccCH--HHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 403 PVIGFIG-RLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 403 ~~i~~iG-rl~~~KG~--d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
.+++..| .-...|.. +...+.+..+.+...++++.|... .++..+++...++..+...+.-+-.++..+++.||+
T Consensus 177 ~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~--e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 177 YIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPD--EEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred eEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChH--HHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 4566667 55566764 467777777766668999999873 677778888777753334445555677789999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCc
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (586)
+|-+.. |..=+ |.|.|+|+|+--..
T Consensus 255 ~I~~DS----g~~Hl-AaA~~~P~I~iyg~ 279 (334)
T COG0859 255 VIGNDS----GPMHL-AAALGTPTIALYGP 279 (334)
T ss_pred EEccCC----hHHHH-HHHcCCCEEEEECC
Confidence 986543 33333 78999999987633
No 167
>PLN02670 transferase, transferring glycosyl groups
Probab=86.11 E-value=19 Score=39.59 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCc----CcccccccCcceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
+|+...+..+-+ .|| ++++||+.+|+|+|+.... .....+.+-+.|+.+.....+ ..-+.++++++|+
T Consensus 352 IL~H~~v~~Fvt---HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~----~~~~~e~i~~av~ 424 (472)
T PLN02670 352 ILSHESVGGFLT---HCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERD----GSFTSDSVAESVR 424 (472)
T ss_pred HhcCcccceeee---cCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccC----CcCcHHHHHHHHH
Confidence 777666633323 354 6799999999999997643 344455556778765110000 1136899999999
Q ss_pred HHHHh
Q 007873 548 RALAT 552 (586)
Q Consensus 548 ~ll~~ 552 (586)
+++.+
T Consensus 425 ~vm~~ 429 (472)
T PLN02670 425 LAMVD 429 (472)
T ss_pred HHhcC
Confidence 99976
No 168
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=85.53 E-value=0.98 Score=43.43 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=29.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~ 130 (586)
||||+.+..- =.+.-+..|.++|++.||+|.|++|...+
T Consensus 1 M~ILlTNDDG-------i~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDG-------IDAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCC-------CCCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 8999998762 12234778999998888999999998543
No 169
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=84.72 E-value=28 Score=38.08 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCc----CcccccccC-cceEEEccccccccCCCCCCHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTG----GLVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~g----g~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
+|+..++-.+-+ .|| ++++||+.+|+|+|+.... .....+.+. ..|+-+. ..-+.++++++|
T Consensus 337 iL~h~~v~~fvt---H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~---------~~~~~~~v~~av 404 (451)
T PLN02410 337 VLSHPAVGGFWS---HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE---------GDLDRGAVERAV 404 (451)
T ss_pred HhCCCccCeeee---cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC---------CcccHHHHHHHH
Confidence 677655522222 244 5799999999999987643 344444443 5776551 235789999999
Q ss_pred HHHHHh
Q 007873 547 RRALAT 552 (586)
Q Consensus 547 ~~ll~~ 552 (586)
++++.+
T Consensus 405 ~~lm~~ 410 (451)
T PLN02410 405 KRLMVE 410 (451)
T ss_pred HHHHcC
Confidence 999976
No 170
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=84.20 E-value=6.5 Score=43.36 Aligned_cols=127 Identities=16% Similarity=0.100 Sum_probs=70.7
Q ss_pred CCcEEEEEecCcc---ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 401 NIPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 401 ~~~~i~~iGrl~~---~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
+..+++..|.+.. .+-.+.+++|++++ ++ ++++.=++.. . .. ++.|+...-+.++. ++|+..
T Consensus 276 ~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~--~~-~~iW~~~~~~--~---~~----l~~n~~~~~W~PQ~---~lL~hp 340 (500)
T PF00201_consen 276 KGVVYVSFGSIVSSMPEEKLKEIAEAFENL--PQ-RFIWKYEGEP--P---EN----LPKNVLIVKWLPQN---DLLAHP 340 (500)
T ss_dssp TEEEEEE-TSSSTT-HHHHHHHHHHHHHCS--TT-EEEEEETCSH--G---CH----HHTTEEEESS--HH---HHHTST
T ss_pred CCEEEEecCcccchhHHHHHHHHHHHHhhC--CC-cccccccccc--c---cc----ccceEEEeccccch---hhhhcc
Confidence 3456777788642 22245577777776 33 7776655531 1 11 22346444444443 477655
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+-++=+. +=-++++||+.+|+|+|+-..-| ....+.+.+.|.... ...-+.+++.++|.++++|
T Consensus 341 ~v~~fitH--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~--------~~~~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 341 RVKLFITH--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLD--------KNDLTEEELRAAIREVLEN 409 (500)
T ss_dssp TEEEEEES----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEG--------GGC-SHHHHHHHHHHHHHS
T ss_pred cceeeeec--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEE--------ecCCcHHHHHHHHHHHHhh
Confidence 44333222 23456999999999999986432 444555656677651 1223579999999999998
No 171
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=84.04 E-value=13 Score=38.91 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHHhCCCCCCCCcEEEEEecC-ccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCC----ceE-
Q 007873 389 ALQAEVGLPVDRNIPVIGFIGRL-EEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE----KAR- 460 (586)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl-~~~KG--~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~----~v~- 460 (586)
.+.+.+++..+ ...+++..|.- .+.|. .+...+.+..+.+.+++++++|+.. .++..+++....+. ++.
T Consensus 169 ~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~--e~~~~~~i~~~~~~~~~~~~~~ 245 (348)
T PRK10916 169 ETCAAFSLSSE-RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAK--DHEAGNEILAALNTEQQAWCRN 245 (348)
T ss_pred HHHHHcCCCCC-CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHH--hHHHHHHHHHhcccccccceee
Confidence 34445554322 22445566553 45665 3456666666655678999998654 23344444444331 122
Q ss_pred EEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 461 GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 461 ~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
..+..+-.++..+++.||++|-.-. |..=+ |.|.|+|+|+--
T Consensus 246 l~g~~sL~el~ali~~a~l~I~nDT----Gp~Hl-AaA~g~P~valf 287 (348)
T PRK10916 246 LAGETQLEQAVILIAACKAIVTNDS----GLMHV-AAALNRPLVALY 287 (348)
T ss_pred ccCCCCHHHHHHHHHhCCEEEecCC----hHHHH-HHHhCCCEEEEE
Confidence 2234455667789999999995432 22222 788999998754
No 172
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=83.71 E-value=3.6 Score=41.48 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=57.9
Q ss_pred CCCcEEEEEecCccc-------cCHHHHHHHHhhccc--CCeEEEEEeCCCh---hhHHHHHHHHHHCCCceEEEeccCh
Q 007873 400 RNIPVIGFIGRLEEQ-------KGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEILYPEKARGVAKFNI 467 (586)
Q Consensus 400 ~~~~~i~~iGrl~~~-------KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~---~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (586)
.+++.|+++...... .....+++.+..+.+ |+.+++|==-... .....+.++.. .. ++... .+.
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~-~~-~~~~~--~~~ 190 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN-LP-NVVII--DDD 190 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc-CC-CeEEE--CCC
Confidence 356788888887654 233445555555443 5777776433210 01122222221 11 12211 122
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (586)
-...+++..||.++. --+.+.+||+.+|+||++-..
T Consensus 191 ~~~~~Ll~~s~~Vvt-----inStvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 191 VNLYELLEQSDAVVT-----INSTVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCHHHHHHhCCEEEE-----ECCHHHHHHHHcCCceEEecC
Confidence 345579999999884 356799999999999999754
No 173
>PLN03004 UDP-glycosyltransferase
Probab=83.50 E-value=17 Score=39.79 Aligned_cols=137 Identities=11% Similarity=-0.012 Sum_probs=75.4
Q ss_pred CcEEEEEecCc--cccCHHHHHHHHhhcccCCeEEEEEeCCCh-------hhHHHH-HHHHHHCC-CceEEEeccChHHH
Q 007873 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKK-------PMEKQL-EQLEILYP-EKARGVAKFNIPLA 470 (586)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~-------~~~~~l-~~l~~~~~-~~v~~~~~~~~~~~ 470 (586)
..+.+.+|... ..+-+..|..++.... ..|+.+=..+. .....+ +...++.. .++....+.++.
T Consensus 271 sVvyvsfGS~~~~~~~q~~ela~gL~~s~---~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~-- 345 (451)
T PLN03004 271 SVVFLCFGSLGLFSKEQVIEIAVGLEKSG---QRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQV-- 345 (451)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHCC---CCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHH--
Confidence 45677778773 3445566666666652 24443322110 011101 11111121 234444444443
Q ss_pred HHHHHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCC----cCccccccc-CcceEEEccccccccCCCCCCHHHHHH
Q 007873 471 HMIIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVAST----GGLVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVST 544 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~----gg~~e~v~~-g~~G~~~~~~~~~~~~v~~~d~~~la~ 544 (586)
++|+.+++..+-+. || ++++||+++|+|+|+... ......+.+ -+.|+.+.. + .-..-+.+++++
T Consensus 346 -~iL~H~~v~~FvTH---~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~---~--~~~~~~~e~l~~ 416 (451)
T PLN03004 346 -PVLNHKAVGGFVTH---CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNE---S--ETGFVSSTEVEK 416 (451)
T ss_pred -HHhCCCccceEecc---CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecC---C--cCCccCHHHHHH
Confidence 38888888443333 44 679999999999999764 334545543 367776510 0 000237899999
Q ss_pred HHHHHHHh
Q 007873 545 TVRRALAT 552 (586)
Q Consensus 545 ~I~~ll~~ 552 (586)
+|++++++
T Consensus 417 av~~vm~~ 424 (451)
T PLN03004 417 RVQEIIGE 424 (451)
T ss_pred HHHHHhcC
Confidence 99999976
No 174
>PLN02208 glycosyltransferase family protein
Probab=83.13 E-value=17 Score=39.57 Aligned_cols=72 Identities=7% Similarity=0.054 Sum_probs=46.7
Q ss_pred HHHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----ccccccc-CcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~~-g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
+|+...+-++-+. || ++++||+++|+|+|+-..-+ ....+.+ -..|..++.. .-..-+.++++++|
T Consensus 324 iL~H~~v~~FvtH---cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-----~~~~~~~~~l~~ai 395 (442)
T PLN02208 324 ILDHPSIGCFVNH---CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSRE-----KTGWFSKESLSNAI 395 (442)
T ss_pred HhcCCccCeEEcc---CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccc-----cCCcCcHHHHHHHH
Confidence 7777766444333 55 66999999999999976432 4444333 4567665100 00013789999999
Q ss_pred HHHHHh
Q 007873 547 RRALAT 552 (586)
Q Consensus 547 ~~ll~~ 552 (586)
++++++
T Consensus 396 ~~~m~~ 401 (442)
T PLN02208 396 KSVMDK 401 (442)
T ss_pred HHHhcC
Confidence 999976
No 175
>PLN02210 UDP-glucosyl transferase
Probab=83.04 E-value=24 Score=38.69 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=73.0
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEE-EeCCC-hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIV-LGTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvI-vG~g~-~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
..+.+..|..... .-+.+-+.+..|...+.+|++ ++... ......+++... +++.. ...|-.+. ++|+.+.+
T Consensus 270 svvyvsfGS~~~~-~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~--~~~g~-v~~w~PQ~--~iL~h~~v 343 (456)
T PLN02210 270 SVVYISFGSMLES-LENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVK--EGQGV-VLEWSPQE--KILSHMAI 343 (456)
T ss_pred ceEEEEecccccC-CHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhcc--CCCeE-EEecCCHH--HHhcCcCc
Confidence 3567777876532 334444444444343556554 44321 111122222211 12222 22343322 38888873
Q ss_pred EEEcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----ccccccc-CcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 480 ILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 480 ~l~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~~-g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
..+-+ .|| ++++||+.+|+|+|+-...+ ....+.+ -+.|+.+..-.. -..-+.++++++|++++.+
T Consensus 344 g~Fit---H~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~----~~~~~~~~l~~av~~~m~~ 415 (456)
T PLN02210 344 SCFVT---HCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAV----DGELKVEEVERCIEAVTEG 415 (456)
T ss_pred CeEEe---eCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEecccc----CCcCCHHHHHHHHHHHhcC
Confidence 33322 244 57999999999999986433 4445554 467776510000 0124789999999999976
No 176
>PLN02167 UDP-glycosyltransferase family protein
Probab=82.34 E-value=23 Score=38.94 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=69.3
Q ss_pred CcEEEEEecCc--cccCHHHHHHHHhhcccCCeEEE-EEeCCChhh---HHHH-HHHHHHCCCceEEEeccChHHHHHHH
Q 007873 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQII-VLGTGKKPM---EKQL-EQLEILYPEKARGVAKFNIPLAHMII 474 (586)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~Ll~A~~~l~~~~v~lv-IvG~g~~~~---~~~l-~~l~~~~~~~v~~~~~~~~~~~~~~l 474 (586)
..+.+.+|.+. ..+-+..+++++..+ +..|+ +++...... ...+ +...++..++.....+.++. .+|
T Consensus 281 svvyvsfGS~~~~~~~~~~ela~~l~~~---~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~---~iL 354 (475)
T PLN02167 281 SVVFLCFGSLGSLPAPQIKEIAQALELV---GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQV---EIL 354 (475)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHHhC---CCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHH---HHh
Confidence 35666777763 233466666666665 44554 344221100 0000 01111111222222222332 267
Q ss_pred Hhcc--EEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----ccc-ccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 475 AGAD--FILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVD-TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 475 ~~aD--i~l~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e-~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
+... .|| -.|| ++.+||+++|+|+|+-...+ ... ++..-+.|+.+..... -+.-..-+.++++++|
T Consensus 355 ~h~~vg~fv-----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~-~~~~~~~~~~~l~~av 428 (475)
T PLN02167 355 AHKAIGGFV-----SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYV-SAYGEIVKADEIAGAV 428 (475)
T ss_pred cCcccCeEE-----eeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccc-cccCCcccHHHHHHHH
Confidence 6644 444 2354 47999999999999886433 332 2444456765410000 0000123689999999
Q ss_pred HHHHHh
Q 007873 547 RRALAT 552 (586)
Q Consensus 547 ~~ll~~ 552 (586)
++++.+
T Consensus 429 ~~~m~~ 434 (475)
T PLN02167 429 RSLMDG 434 (475)
T ss_pred HHHhcC
Confidence 999975
No 177
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.18 E-value=6.2 Score=34.68 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=39.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCe----eeEEEEEEEEeC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDK----IEKVRFFHCHKR 160 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 160 (586)
|||+|+-.... ...=..+....|+.+..++||+|.++.+..-.+.+..-......+.+.+. .+..........
T Consensus 1 Mki~fvmDpi~---~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~ 77 (119)
T PF02951_consen 1 MKIAFVMDPIE---SIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLD 77 (119)
T ss_dssp -EEEEEES-GG---G--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGG
T ss_pred CeEEEEeCCHH---HCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccc
Confidence 89999986321 11112335667889999999999999987322222111111222333221 122222233456
Q ss_pred CceEEEEcCc
Q 007873 161 GVDRVFVDHP 170 (586)
Q Consensus 161 gv~~~~v~~~ 170 (586)
.++++++...
T Consensus 78 ~~DvvlmRkD 87 (119)
T PF02951_consen 78 DFDVVLMRKD 87 (119)
T ss_dssp GSSEEEEE--
T ss_pred cCCEEEEecC
Confidence 7888877543
No 178
>PLN00164 glucosyltransferase; Provisional
Probab=81.58 E-value=16 Score=40.23 Aligned_cols=74 Identities=18% Similarity=0.070 Sum_probs=45.9
Q ss_pred HHHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCc----Cccccc-ccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTG----GLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~g----g~~e~v-~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
+|+.+++..+-+. || ++.+||+.+|+|+|+-..- -....+ +.-+.|+.+.. +-..-..-+.++++++|
T Consensus 352 iL~h~~vg~fvtH---~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~---~~~~~~~~~~e~l~~av 425 (480)
T PLN00164 352 ILAHAAVGGFVTH---CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKV---DRKRDNFVEAAELERAV 425 (480)
T ss_pred HhcCcccCeEEee---cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecc---ccccCCcCcHHHHHHHH
Confidence 7777775333232 44 5799999999999997643 244333 33466765410 00000113689999999
Q ss_pred HHHHHh
Q 007873 547 RRALAT 552 (586)
Q Consensus 547 ~~ll~~ 552 (586)
++++.+
T Consensus 426 ~~vm~~ 431 (480)
T PLN00164 426 RSLMGG 431 (480)
T ss_pred HHHhcC
Confidence 999975
No 179
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=80.42 E-value=3.3 Score=36.53 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=31.0
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
..+.+++..+|++|--|..+..--.+-.++.+|+|+|+--+|.-.+
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 3456788889999987765555556667888999999988877543
No 180
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=80.18 E-value=8 Score=31.88 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=24.4
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCC
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNI 268 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~ 268 (586)
+.| |||.|...+.+..-.+.... ..|.++|||-|++
T Consensus 50 ~I~-IVHgH~a~S~l~hE~i~hA~-----~mGlktVfTDHSL 85 (90)
T PF08288_consen 50 RID-IVHGHQAFSTLCHEAILHAR-----TMGLKTVFTDHSL 85 (90)
T ss_pred Cee-EEEeehhhhHHHHHHHHHHH-----hCCCcEEeecccc
Confidence 478 99999876665443332221 1589999999965
No 181
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=79.92 E-value=29 Score=35.79 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=61.3
Q ss_pred cEEEEEecCccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 403 PVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 403 ~~i~~iGrl~~~KG--~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.+++..|.-...|. .+...+.+..+.+.+.++++.|+++. ..+..+++.+..+ .+...+..+-.++..+++.||++
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~-e~~~~~~i~~~~~-~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH-EEQRAKRLAEGFP-YVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH-HHHHHHHHHccCC-cceecCCCCHHHHHHHHHhCCEE
Confidence 33344554444555 44677777777556788888633332 3344555544433 24344556667777899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcC
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg 510 (586)
|-.-. | ..-=|.|+|+|+|+--.+.
T Consensus 258 I~nDS----G-p~HlA~A~g~p~valfGpt 282 (322)
T PRK10964 258 VSVDT----G-LSHLTAALDRPNITLYGPT 282 (322)
T ss_pred EecCC----c-HHHHHHHhCCCEEEEECCC
Confidence 96432 2 2233789999999865433
No 182
>PLN03007 UDP-glucosyltransferase family protein
Probab=79.61 E-value=29 Score=38.24 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=71.7
Q ss_pred CCcEEEEEecCcc--ccCHHHHHHHHhhcccCCeEEE-EEeCCCh------hhHHHHHHHHHHCCCceEEEeccChHHHH
Q 007873 401 NIPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQII-VLGTGKK------PMEKQLEQLEILYPEKARGVAKFNIPLAH 471 (586)
Q Consensus 401 ~~~~i~~iGrl~~--~KG~d~Ll~A~~~l~~~~v~lv-IvG~g~~------~~~~~l~~l~~~~~~~v~~~~~~~~~~~~ 471 (586)
+..+.+..|.... .+.+..+++++..+ +..|+ .++.... ...+.+++.. .+.++....+.++.
T Consensus 285 ~svvyvsfGS~~~~~~~~~~~~~~~l~~~---~~~flw~~~~~~~~~~~~~~lp~~~~~r~--~~~g~~v~~w~PQ~--- 356 (482)
T PLN03007 285 DSVIYLSFGSVASFKNEQLFEIAAGLEGS---GQNFIWVVRKNENQGEKEEWLPEGFEERT--KGKGLIIRGWAPQV--- 356 (482)
T ss_pred CceEEEeecCCcCCCHHHHHHHHHHHHHC---CCCEEEEEecCCcccchhhcCCHHHHHHh--ccCCEEEecCCCHH---
Confidence 3456777787643 34455555555554 44444 3443210 0111111111 12345444444443
Q ss_pred HHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----ccccccc-CcceEEEccccccc-cCCCCCCHHHHHHH
Q 007873 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSFSVDC-EAVDPVDVAAVSTT 545 (586)
Q Consensus 472 ~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~-g~~G~~~~~~~~~~-~~v~~~d~~~la~~ 545 (586)
.+|+.+++-++-+. +=-++++||+.+|+|+|+....+ ....+.+ -..|+-++.-.. . ..-..-+.++++++
T Consensus 357 ~iL~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~l~~a 433 (482)
T PLN03007 357 LILDHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKL-VKVKGDFISREKVEKA 433 (482)
T ss_pred HHhccCccceeeec--CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccc-cccccCcccHHHHHHH
Confidence 47888776333232 22367999999999999986433 3332221 234443310000 0 00022478999999
Q ss_pred HHHHHHh
Q 007873 546 VRRALAT 552 (586)
Q Consensus 546 I~~ll~~ 552 (586)
|++++.+
T Consensus 434 v~~~m~~ 440 (482)
T PLN03007 434 VREVIVG 440 (482)
T ss_pred HHHHhcC
Confidence 9999976
No 183
>PLN02555 limonoid glucosyltransferase
Probab=79.30 E-value=32 Score=37.95 Aligned_cols=60 Identities=10% Similarity=-0.059 Sum_probs=38.9
Q ss_pred cHHHHHHHHcCCcEEEcCCc----CcccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 490 GLIQLHAMRYGTVPIVASTG----GLVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 490 gl~~lEAma~G~PvI~s~~g----g~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-++.+||+.+|+|+|+...- .....+.+. +.|+-++.- .+ .-..-+.++++++|++++.+
T Consensus 365 ~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~-~~--~~~~v~~~~v~~~v~~vm~~ 429 (480)
T PLN02555 365 WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRG-EA--ENKLITREEVAECLLEATVG 429 (480)
T ss_pred cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCC-cc--ccCcCcHHHHHHHHHHHhcC
Confidence 46799999999999998643 244444444 667665210 00 00123678999999999965
No 184
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=77.11 E-value=4.4 Score=36.09 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=31.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeE-EEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V-~vvt~ 126 (586)
||++++-.. +|+ .+-.++-..++++++.+.||+| .|+-.
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 899999876 676 5566678889999999999995 66643
No 185
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=75.61 E-value=59 Score=35.85 Aligned_cols=133 Identities=10% Similarity=-0.012 Sum_probs=68.6
Q ss_pred CcEEEEEecCcc--ccCHHHHHHHHhhcccCCeEEEE-EeCCCh------hhHHHHHHHHHHCCCceEEEeccChHHHHH
Q 007873 402 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIV-LGTGKK------PMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (586)
Q Consensus 402 ~~~i~~iGrl~~--~KG~d~Ll~A~~~l~~~~v~lvI-vG~g~~------~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ 472 (586)
..+.+.+|.+.. .+-+..+++++... +..|++ ++.... .....+.+... +.++....+.++. .
T Consensus 284 svVyvsfGS~~~~~~~~~~ela~gL~~~---~~~flw~~~~~~~~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~---~ 355 (477)
T PLN02863 284 KVVYVCFGSQVVLTKEQMEALASGLEKS---GVHFIWCVKEPVNEESDYSNIPSGFEDRVA--GRGLVIRGWAPQV---A 355 (477)
T ss_pred ceEEEEeeceecCCHHHHHHHHHHHHhC---CCcEEEEECCCcccccchhhCCHHHHHHhc--cCCEEecCCCCHH---H
Confidence 356677777642 22355566666554 445554 432110 01111111111 1234333344442 3
Q ss_pred HHHh--ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccc-cCcceEEEccccccccCCCCCCHHHHHHH
Q 007873 473 IIAG--ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTT 545 (586)
Q Consensus 473 ~l~~--aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~-~g~~G~~~~~~~~~~~~v~~~d~~~la~~ 545 (586)
+|+. +++||. -+=.++.+||+++|+|+|+-...+ ....+. +-+.|.-+.. +.. ..-+.++++++
T Consensus 356 vL~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~---~~~--~~~~~~~v~~~ 426 (477)
T PLN02863 356 ILSHRAVGAFLT----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCE---GAD--TVPDSDELARV 426 (477)
T ss_pred HhcCCCcCeEEe----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEecc---CCC--CCcCHHHHHHH
Confidence 6665 455552 223367999999999999976432 344433 3367765410 000 12367899999
Q ss_pred HHHHHH
Q 007873 546 VRRALA 551 (586)
Q Consensus 546 I~~ll~ 551 (586)
+.+++.
T Consensus 427 v~~~m~ 432 (477)
T PLN02863 427 FMESVS 432 (477)
T ss_pred HHHHhh
Confidence 998884
No 186
>PLN02764 glycosyltransferase family protein
Probab=74.47 E-value=37 Score=37.10 Aligned_cols=73 Identities=5% Similarity=-0.037 Sum_probs=45.2
Q ss_pred HHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccc-cCcceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~-~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
+|+...+..+-+. +=.++.+||+.+|+|+|+-...+ ....+. +-..|+.+.. + ....-+.+++.++|+
T Consensus 330 vL~h~~v~~FvtH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~---~--~~~~~~~e~i~~av~ 402 (453)
T PLN02764 330 ILSHPSVGCFVSH--CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAR---E--ETGWFSKESLRDAIN 402 (453)
T ss_pred HhcCcccCeEEec--CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEecc---c--cCCccCHHHHHHHHH
Confidence 6666544222222 33467999999999999986543 444553 3355654310 0 000237899999999
Q ss_pred HHHHh
Q 007873 548 RALAT 552 (586)
Q Consensus 548 ~ll~~ 552 (586)
+++++
T Consensus 403 ~vm~~ 407 (453)
T PLN02764 403 SVMKR 407 (453)
T ss_pred HHhcC
Confidence 99976
No 187
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=73.08 E-value=5.2 Score=35.47 Aligned_cols=28 Identities=32% Similarity=0.302 Sum_probs=21.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++|--.=...|+++|.++||+|.+.++.
T Consensus 8 t~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp SHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 4555555667999999999999988875
No 188
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=72.54 E-value=13 Score=34.84 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=26.5
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEE
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCI 265 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~i 265 (586)
+|| +|.++.-.+++..+++.+.++.-++ .++|+||.-
T Consensus 92 rPd-vii~nGpg~~vp~~~~~~l~~~~~~-~~~kiIyIE 128 (170)
T PF08660_consen 92 RPD-VIISNGPGTCVPVCLAAKLLRLLGL-RGSKIIYIE 128 (170)
T ss_pred CCC-EEEEcCCceeeHHHHHHHHHHHhhc-cCCcEEEEE
Confidence 699 8999888888877777766533333 278888753
No 189
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=71.59 E-value=13 Score=37.83 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEc-C--CcCcccccccCcceEEEccccccccCCCCCCHHHHHHH
Q 007873 469 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-S--TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTT 545 (586)
Q Consensus 469 ~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s-~--~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~ 545 (586)
...+.|+.+.++++|.=..++..-++|||++|+.+|.. + .-.+.|++.=....+.+ +..+..+|.+.
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v----------~~~~~~~l~~i 298 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRV----------PEADLPELPEI 298 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEE----------CHHHHHHHHHH
Confidence 35579999999999888777999999999999866554 3 23355666444445554 66777666655
Q ss_pred HH
Q 007873 546 VR 547 (586)
Q Consensus 546 I~ 547 (586)
|+
T Consensus 299 L~ 300 (302)
T PF03016_consen 299 LR 300 (302)
T ss_pred Hh
Confidence 54
No 190
>PLN02207 UDP-glycosyltransferase
Probab=71.53 E-value=1.1e+02 Score=33.59 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=70.6
Q ss_pred CcEEEEEecCc--cccCHHHHHHHHhhcccCCeEEEE-EeCCChhhHHHH-HHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQL-EQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~Ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l-~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
..+.+.+|... ..+-+..++.++..+ +..|++ +.+......+.+ +...++.+++.....+.++.+ +|+..
T Consensus 276 sVVyvSfGS~~~~~~~q~~ela~~l~~~---~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~---IL~H~ 349 (468)
T PLN02207 276 SVVFLCFGSMGRLRGPLVKEIAHGLELC---QYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVE---ILAHK 349 (468)
T ss_pred cEEEEEeccCcCCCHHHHHHHHHHHHHC---CCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHH---Hhccc
Confidence 35666777654 233455666666665 334443 442110000000 122222334443333334432 66665
Q ss_pred cEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----ccccccc-CcceEEEccc-cccccCCCCCCHHHHHHHHHHHH
Q 007873 478 DFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSF-SVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 478 Di~l~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~~-g~~G~~~~~~-~~~~~~v~~~d~~~la~~I~~ll 550 (586)
.+..+-+ .|| ++.+||+.+|+|+|+-...+ ....+.+ -+.|+-++.- ..+. -..-+.++++++|++++
T Consensus 350 ~vg~FvT---H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~--~~~v~~e~i~~av~~vm 424 (468)
T PLN02207 350 AVGGFVS---HCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHS--DEIVNANEIETAIRCVM 424 (468)
T ss_pred ccceeee---cCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccccc--CCcccHHHHHHHHHHHH
Confidence 5533222 344 56899999999999986433 3443333 4566643100 0000 01237789999999999
Q ss_pred H
Q 007873 551 A 551 (586)
Q Consensus 551 ~ 551 (586)
.
T Consensus 425 ~ 425 (468)
T PLN02207 425 N 425 (468)
T ss_pred h
Confidence 6
No 191
>PLN00414 glycosyltransferase family protein
Probab=71.38 E-value=60 Score=35.43 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=46.4
Q ss_pred HHHhccE--EEEcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----cccccc-cCcceEEEccccccccCCCCCCHHHHHH
Q 007873 473 IIAGADF--ILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVST 544 (586)
Q Consensus 473 ~l~~aDi--~l~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~-~g~~G~~~~~~~~~~~~v~~~d~~~la~ 544 (586)
+|+.+.+ || + .|| ++.+||+.+|+|+|+....+ ....+. +-..|+.+... + -..-+.+++++
T Consensus 325 vL~h~~v~~fv--t---H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~--~---~~~~~~~~i~~ 394 (446)
T PLN00414 325 ILSHPSVGCFV--N---HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRE--D---SGWFSKESLRD 394 (446)
T ss_pred HhcCCccceEE--e---cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccc--c---CCccCHHHHHH
Confidence 7777644 55 2 344 67999999999999986433 444553 45677665100 0 00247899999
Q ss_pred HHHHHHHh
Q 007873 545 TVRRALAT 552 (586)
Q Consensus 545 ~I~~ll~~ 552 (586)
++++++.+
T Consensus 395 ~v~~~m~~ 402 (446)
T PLN00414 395 TVKSVMDK 402 (446)
T ss_pred HHHHHhcC
Confidence 99999976
No 192
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=71.07 E-value=98 Score=33.91 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=74.6
Q ss_pred CcEEEEEecCc--cccCHHHHHHHHhhcccCCeEEE-EEeCCCh-------hhHHH---HHHHHHHCCCceEEEeccChH
Q 007873 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQII-VLGTGKK-------PMEKQ---LEQLEILYPEKARGVAKFNIP 468 (586)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~Ll~A~~~l~~~~v~lv-IvG~g~~-------~~~~~---l~~l~~~~~~~v~~~~~~~~~ 468 (586)
..+.+.+|.+. ..+-++.+..++..+.. .|+ ++.+... ..... .+...++.+++.....+.++.
T Consensus 262 sVvyvsfGS~~~l~~~q~~ela~gL~~s~~---~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~ 338 (455)
T PLN02152 262 SVIYVSFGTMVELSKKQIEELARALIEGKR---PFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQI 338 (455)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHcCC---CeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHH
Confidence 45667778764 45566777777777632 443 3443100 00001 123333344444333333332
Q ss_pred HHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc----CcccccccC-cceEEEccccccccCCCCCCHHHHH
Q 007873 469 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVS 543 (586)
Q Consensus 469 ~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la 543 (586)
++|+...+-++-+. +=.++++||+.+|+|+|+-... .....+.+. +.|+-+. .+ .-+.-+.++++
T Consensus 339 ---~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~---~~--~~~~~~~e~l~ 408 (455)
T PLN02152 339 ---EVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVR---EN--SEGLVERGEIR 408 (455)
T ss_pred ---HHhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEee---cC--cCCcCcHHHHH
Confidence 37887776444333 2236799999999999987643 233344431 3455431 00 00123789999
Q ss_pred HHHHHHHHh
Q 007873 544 TTVRRALAT 552 (586)
Q Consensus 544 ~~I~~ll~~ 552 (586)
++|++++++
T Consensus 409 ~av~~vm~~ 417 (455)
T PLN02152 409 RCLEAVMEE 417 (455)
T ss_pred HHHHHHHhh
Confidence 999999975
No 193
>PLN02554 UDP-glycosyltransferase family protein
Probab=71.00 E-value=94 Score=34.28 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=38.7
Q ss_pred Cc-HHHHHHHHcCCcEEEcCCcC----cc-cccccCcceEEEcccccccc----CCCCCCHHHHHHHHHHHHH
Q 007873 489 CG-LIQLHAMRYGTVPIVASTGG----LV-DTVEEGFTGFQMGSFSVDCE----AVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 489 ~g-l~~lEAma~G~PvI~s~~gg----~~-e~v~~g~~G~~~~~~~~~~~----~v~~~d~~~la~~I~~ll~ 551 (586)
|| ++++||+.+|+|+|+....+ .. ..++.-+.|..++. ..+-+ .-..-+.++++++|++++.
T Consensus 368 ~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~-~~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 368 CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRK-YWRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeec-cccccccccccCeEcHHHHHHHHHHHhc
Confidence 44 57999999999999986433 33 33445456766510 00000 0012378999999999996
No 194
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=69.84 E-value=36 Score=37.37 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=56.7
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCC-cEEEcCC--cCcccccccCcceEEEccccccccCCCCCCHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-VPIVAST--GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVST 544 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~-PvI~s~~--gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~ 544 (586)
....+.++.+-+++.|.=.++..-.++||+.+|| |||.++. ..+.+++.-..-++.+ . .+++-+
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v----------~---~~~v~~ 401 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFV----------P---EKDVPE 401 (464)
T ss_pred chHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEE----------E---HHHhhh
Confidence 3456799999999999999998889999999997 5566663 4455555544444443 3 334433
Q ss_pred HHHHHHHhcCHHHHHHHHHHH
Q 007873 545 TVRRALATYGTQALAEMMKNG 565 (586)
Q Consensus 545 ~I~~ll~~~~~~~~~~~~~~~ 565 (586)
.|.+.|..-..+.+..|.++.
T Consensus 402 ~~~~iL~~i~~~~~~~m~~~v 422 (464)
T KOG1021|consen 402 LIKNILLSIPEEEVLRMRENV 422 (464)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 356666554445556666665
No 195
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=67.84 E-value=1.1e+02 Score=29.25 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=66.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHHHHH--hccEEEEcCCCCC----CcHHHHHHHH---cC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIA--GADFILIPSRFEP----CGLIQLHAMR---YG 500 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~~l~--~aDi~l~PS~~E~----~gl~~lEAma---~G 500 (586)
+++++|+.+.+. ....++.+....+. +.....+ +.++....+. ..|++++-....+ .|+.+++.+. -.
T Consensus 3 ~~~Ilivdd~~~-~~~~l~~~L~~~~~-~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPI-VLFGIRKSLEQIEW-VNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHH-HHHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 356777776552 34445554444332 2222233 4444444443 4698888654433 5777777765 34
Q ss_pred CcEEEcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|+|+-. ... ..+.++.|..||+. .+.++++|.++|..++..
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~----------K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVL----------KQGAPTDLPKALAALQKG 126 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEE----------CCCCHHHHHHHHHHHHCC
Confidence 5665543 222 23456778999998 899999999999988763
No 196
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=67.69 E-value=59 Score=31.49 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=65.7
Q ss_pred EEEEecCcc--ccCHHHHHHHHhhcccCCeEEEEEeCCC---hhhHHHHHHHHHHC-CCceEEEeccChHHHHHHHHhcc
Q 007873 405 IGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILY-PEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 405 i~~iGrl~~--~KG~d~Ll~A~~~l~~~~v~lvIvG~g~---~~~~~~l~~l~~~~-~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
++.-|.... ..+.+.|.+.+..+.+++.+++++.+.. .++...+.+.-.++ +..+.....++.+...+.+..||
T Consensus 3 ~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad 82 (212)
T cd03146 3 LLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEAD 82 (212)
T ss_pred EEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCC
Confidence 344444443 4567777777777756678899988865 23444455544555 54444333334455567999999
Q ss_pred EEEEcCC--------CCCCc--HHHHHHHHcCCcEEEcCCcC
Q 007873 479 FILIPSR--------FEPCG--LIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 479 i~l~PS~--------~E~~g--l~~lEAma~G~PvI~s~~gg 510 (586)
++++|-= +...+ -.+-++...|+|++.+..|.
T Consensus 83 ~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 83 VIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred EEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 9999951 12223 33445566799998887664
No 197
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=65.22 E-value=9.2 Score=36.22 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=26.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++|+.. |-+| ..+.++..++||+|+.++..
T Consensus 1 mKIaiIgAs-------G~~G---s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGAS-------GKAG---SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecC-------chhH---HHHHHHHHhCCCeeEEEEeC
Confidence 899999974 3333 34778888999999999876
No 198
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=63.51 E-value=1.1e+02 Score=28.03 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=65.1
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHcCCcEEEcCC
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~G~PvI~s~~ 508 (586)
+++|+.+.+. ....+.+.....++ ....... +.......+. ..|++++-... +.-|..+++.+...+|+|+...
T Consensus 3 ~ilivd~~~~-~~~~l~~~L~~~~~-~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~ 80 (196)
T PRK10360 3 TVALIDDHLI-VRSGFAQLLGLEPD-LQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV 80 (196)
T ss_pred EEEEECCcHH-HHHHHHHHHccCCC-cEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEEC
Confidence 5667776542 33444444332221 2222222 3344434443 46888876543 4567778888877788866543
Q ss_pred cCc----ccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 509 GGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 509 gg~----~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
... .+.+..|..|++. .|.+++++.++|..++..
T Consensus 81 ~~~~~~~~~~~~~ga~~~i~----------kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 81 HDSPALVEQALNAGARGFLS----------KRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHcC
Confidence 222 2345668889987 999999999999998753
No 199
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=63.02 E-value=47 Score=36.92 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=85.8
Q ss_pred cEEEEEecCc-cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEE
Q 007873 403 PVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 403 ~~i~~iGrl~-~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
..-+..|.-. ..||-+..++++.+. -.++-.|.+... .....+.-|..++..++.+..++|..+-++|
T Consensus 278 ~~AlVyGK~~~~w~~k~~~l~~l~~~--~eih~tV~~~~~---------~~~~~P~~V~NHG~l~~~ef~~lL~~akvfi 346 (559)
T PF15024_consen 278 NQALVYGKERYMWKGKEKYLDVLHKY--MEIHGTVYDEPQ---------RPPNVPSFVKNHGILSGDEFQQLLRKAKVFI 346 (559)
T ss_pred ceeEEEccchhhhcCcHHHHHHHHhh--cEEEEEeccCCC---------CCcccchhhhhcCcCCHHHHHHHHHhhhEee
Confidence 4555556644 578888888888775 355555544322 0112233466788889999999999999999
Q ss_pred EcCC-CCCCcHHHHHHHHcCCcEEEcCCcCc-----ccccccCcce--E------E---EccccccccCCCCCCHHHHHH
Q 007873 482 IPSR-FEPCGLIQLHAMRYGTVPIVASTGGL-----VDTVEEGFTG--F------Q---MGSFSVDCEAVDPVDVAAVST 544 (586)
Q Consensus 482 ~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~-----~e~v~~g~~G--~------~---~~~~~~~~~~v~~~d~~~la~ 544 (586)
--.. +| |-+.+||++.|+|.|-...... .+...+.-+- + + +|. --+..|+-+|.+++.+
T Consensus 347 GlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~--PhVytVd~~n~~~v~~ 422 (559)
T PF15024_consen 347 GLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGE--PHVYTVDINNSTEVEA 422 (559)
T ss_pred ecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCC--CeEEEEcCCCHHHHHH
Confidence 6544 34 5678999999999987763221 1111110000 0 0 000 0023468999999999
Q ss_pred HHHHHHHhc
Q 007873 545 TVRRALATY 553 (586)
Q Consensus 545 ~I~~ll~~~ 553 (586)
+|++++++.
T Consensus 423 Avk~il~~~ 431 (559)
T PF15024_consen 423 AVKAILATP 431 (559)
T ss_pred HHHHHHhcC
Confidence 999999873
No 200
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=62.15 E-value=41 Score=31.42 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=63.9
Q ss_pred ccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCC-ceEEE--eccChHHHHHHH-----HhccEEEEc
Q 007873 412 EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGV--AKFNIPLAHMII-----AGADFILIP 483 (586)
Q Consensus 412 ~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~-~v~~~--~~~~~~~~~~~l-----~~aDi~l~P 483 (586)
+..-|.|.+.+.+....+++.++.++|+.++..++..+.+..++|+ ++.+. +.|+.++..+++ +.+|++++-
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3467899999999988777899999999887677777888888885 33322 223434444333 467888864
Q ss_pred CC---CCCCcHHHHHHHHcCCcEEEcCCcCccccccc
Q 007873 484 SR---FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 517 (586)
Q Consensus 484 S~---~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~ 517 (586)
.- .|-|-.... ...-+.|.--+||.-++...
T Consensus 109 lG~PkQE~~~~~~~---~~l~~~v~i~vG~~~d~~aG 142 (172)
T PF03808_consen 109 LGAPKQERWIARHR---QRLPAGVIIGVGGAFDFLAG 142 (172)
T ss_pred CCCCHHHHHHHHHH---HHCCCCEEEEECchhhhhcc
Confidence 32 233222222 22222256666777777654
No 201
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=61.42 E-value=14 Score=33.49 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++|....- +.|-....+..+++.+.+.|++|.++-..
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987632 35777777888899999999999999765
No 202
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=61.34 E-value=21 Score=28.67 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=38.4
Q ss_pred HHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCC
Q 007873 312 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLT 366 (586)
Q Consensus 312 ~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~ 366 (586)
......|.|++..+...+++.+ .|++ ++..+|-++|+..|.|..
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~---~G~~--------~V~yLPLAa~~~~~~p~~ 57 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRN---LGAE--------NVFYLPLAANPERFRPIP 57 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHH---cCCC--------CEEEccccCCHHHhCccc
Confidence 4467899999999999999997 6765 899999999999999875
No 203
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=61.19 E-value=1.1e+02 Score=29.83 Aligned_cols=118 Identities=20% Similarity=0.321 Sum_probs=61.4
Q ss_pred cEEEEEec-CccccCHHHHHHHHhhcccCC--eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 403 PVIGFIGR-LEEQKGSDILAAAIPHFIKEN--VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 403 ~~i~~iGr-l~~~KG~d~Ll~A~~~l~~~~--v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
.+++|+|. +.+.+. .|++.+++|++.+ +.+|..|.... .-+.+.+.....+++ =.++.+
T Consensus 109 riVvFvGSpi~e~ek--eLv~~akrlkk~~Vaidii~FGE~~~-~~e~l~~fida~N~~---------------~~gshl 170 (259)
T KOG2884|consen 109 RIVVFVGSPIEESEK--ELVKLAKRLKKNKVAIDIINFGEAEN-NTEKLFEFIDALNGK---------------GDGSHL 170 (259)
T ss_pred EEEEEecCcchhhHH--HHHHHHHHHHhcCeeEEEEEeccccc-cHHHHHHHHHHhcCC---------------CCCceE
Confidence 57889988 444443 7777778887755 44555665432 123344443333221 123445
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+.+|.-. +|+=.-.-.|+|.-+.||..--.....+-|-|| |+|++-.+||.+++--++.
T Consensus 171 v~Vppg~------~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fg--------vdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 171 VSVPPGP------LLSDALLSSPIIQGEDGGAAAGLGANGMDFEFG--------VDPEDDPELALALRLSMEE 229 (259)
T ss_pred EEeCCCc------cHHHHhhcCceeccCcccccccccccccccccC--------CCcccCHHHHHHHHhhHHH
Confidence 5554431 333444556777776444332222211222221 3666666899999877764
No 204
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.57 E-value=1.9e+02 Score=29.14 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=63.2
Q ss_pred EEEEecCccccCHHHHHHHHhhcccCCeEEEEEeC-----------CC-hhhHHHHHHHHHHCCCceEEEeccChHHHHH
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT-----------GK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHM 472 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~-----------g~-~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ 472 (586)
++.+..-.-....+.+++.+.+|++-.++++..|. |. .+..+.++++..+++-.+ ..-.++...+..
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~-~te~~d~~~~~~ 106 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV-VTEVMDTRDVEE 106 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE-EEeeCChhhHHH
Confidence 34444444445677788888888776778888882 21 223455666666766322 223445555655
Q ss_pred HHHhccEEEEcCCCCCCcHHHHHH-HHcCCcEEEcCC
Q 007873 473 IIAGADFILIPSRFEPCGLIQLHA-MRYGTVPIVAST 508 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~gl~~lEA-ma~G~PvI~s~~ 508 (586)
+...+|++-++|+. .....++++ -..|+||+.+..
T Consensus 107 l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 107 VADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 65669999999984 222334444 457999998873
No 205
>PLN00016 RNA-binding protein; Provisional
Probab=60.42 E-value=11 Score=40.03 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=30.0
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++++.. .||.|..-..|++.|.++||+|++++..
T Consensus 52 ~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 4688887654 4666766667999999999999999865
No 206
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=60.09 E-value=9.9 Score=37.81 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=27.9
Q ss_pred ceEEEEeccccCccccchH--HHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGL--GDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~--~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||++.|..- .||+ .+...+|+.+|++.|++|.+|=..
T Consensus 1 M~~iai~s~------kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSP------KGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecC------CCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 776666642 4554 458889999999999999999443
No 207
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.03 E-value=2e+02 Score=30.70 Aligned_cols=164 Identities=16% Similarity=0.174 Sum_probs=100.9
Q ss_pred EEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC-----hhhHHHHHHHHHH-CCCceEEEeccC-----hHHHHH
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEIL-YPEKARGVAKFN-----IPLAHM 472 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~-----~~~~~~l~~l~~~-~~~~v~~~~~~~-----~~~~~~ 472 (586)
.|=|.|...+.+-..+..+.+.+++++++.+||+-+.- ..+-+++.+.... .|+++.++.--. .+++..
T Consensus 156 ~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 156 RVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred CCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHH
Confidence 35577788999999999999999999999999998842 2333444444443 345666554332 233444
Q ss_pred HHHhccE--EEEcCCC----CCCcHHHHHHHHcCCcEEEcCCcCccccccc----CcceEEEccccccccCCCCCCHHHH
Q 007873 473 IIAGADF--ILIPSRF----EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAV 542 (586)
Q Consensus 473 ~l~~aDi--~l~PS~~----E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~----g~~G~~~~~~~~~~~~v~~~d~~~l 542 (586)
+=...|+ +|++-.. -+..++.. .+.++|||---+|---|-++. ..-+-+ +--+|.+.|
T Consensus 236 Fk~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIiFIGtGEhmdDlE~F~pk~Fvsrl----------LGmGDi~gl 303 (483)
T KOG0780|consen 236 FKETVDVGAVILTKLDGHAKGGGALSAV--AATKSPIIFIGTGEHMDDLEPFDPKPFVSRL----------LGMGDIEGL 303 (483)
T ss_pred HHHhhccceEEEEecccCCCCCceeeeh--hhhCCCEEEEecCccccccCCCChHHHHHHH----------hccccHHHH
Confidence 5555565 3444332 23444444 356889988877654443322 011111 134677788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 543 STTVRRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 543 a~~I~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
.+.+.++..+ .-+++.++-..-+||...+.+++....
T Consensus 304 vek~~ev~~~----d~~el~~kl~~gkFtlrd~y~Qfq~im 340 (483)
T KOG0780|consen 304 VEKVQEVGKD----DAKELVEKLKQGKFTLRDFYDQFQNIM 340 (483)
T ss_pred HHHHHHHhhh----hHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 8888777733 234455555567899999999887644
No 208
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=59.48 E-value=46 Score=31.37 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=62.7
Q ss_pred ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCC-ceEEE-eccChHHHH---HHH--HhccEEEEcC--
Q 007873 414 QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGV-AKFNIPLAH---MII--AGADFILIPS-- 484 (586)
Q Consensus 414 ~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~-~v~~~-~~~~~~~~~---~~l--~~aDi~l~PS-- 484 (586)
.-|.|++.+.++...+.+..+.++|..+...++..+.+.+++|+ ++... +.|+.++.. +.+ +++|++++--
T Consensus 31 v~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 31 VAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred cChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 33899999999888667889999999887777888888888885 44444 344433222 222 4678887642
Q ss_pred -CCCCCcHHHHHHHHcCCcEEEcCCcCccccccc
Q 007873 485 -RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 517 (586)
Q Consensus 485 -~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~ 517 (586)
+.|-|-... .-....+++ -.+||.-|+...
T Consensus 111 PkQE~~~~~~--~~~~~~~v~-~gvGg~fd~~aG 141 (177)
T TIGR00696 111 PKQEIWMRNH--RHLKPDAVM-IGVGGSFDVFSG 141 (177)
T ss_pred cHhHHHHHHh--HHhCCCcEE-EEeceeeeeccc
Confidence 234333221 112233343 347887777653
No 209
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=59.21 E-value=70 Score=29.83 Aligned_cols=103 Identities=23% Similarity=0.324 Sum_probs=64.7
Q ss_pred ccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCC-ceEE--EeccChHHH---HHHH--HhccEEEEc
Q 007873 412 EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARG--VAKFNIPLA---HMII--AGADFILIP 483 (586)
Q Consensus 412 ~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~-~v~~--~~~~~~~~~---~~~l--~~aDi~l~P 483 (586)
+..-|.|.+.+.+....+.+.++.++|+.++..++..+.+..++|+ ++.. .+.|...+. ...+ ..+|++++-
T Consensus 27 ~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 27 ERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVG 106 (171)
T ss_pred cccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 4467999999999998777899999999887677777778888885 4443 223332222 2222 356888764
Q ss_pred C---CCCCCcHHHHHHHHcCCcEEEcCCcCccccccc
Q 007873 484 S---RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 517 (586)
Q Consensus 484 S---~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~ 517 (586)
- ..|-|.....+.+ ..+++.+ +||.-|+...
T Consensus 107 lG~PkQE~~~~~~~~~l--~~~v~~~-vG~~~d~~aG 140 (171)
T cd06533 107 LGAPKQELWIARHKDRL--PVPVAIG-VGGSFDFLAG 140 (171)
T ss_pred CCCCHHHHHHHHHHHHC--CCCEEEE-eceeeEeccC
Confidence 3 3455554444444 3444443 6776666543
No 210
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.10 E-value=15 Score=37.86 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=27.7
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|+.|||++++. |++|.. ++..|++.||+|++++..
T Consensus 2 ~~~~m~I~IiG~--------GaiG~~---lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 2 DSETPRIGIIGT--------GAIGGF---YGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCcCcEEEEECC--------CHHHHH---HHHHHHHCCCeEEEEEeC
Confidence 356799999973 555543 667788899999999875
No 211
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=57.89 E-value=85 Score=29.79 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=27.5
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecC
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~n 355 (586)
.+.+..+...|.|.+.|+..++.+.+ .|++.+ ++.+.-|
T Consensus 141 ~~~r~~l~~f~~i~aqs~~da~r~~~---lG~~~~------~v~v~Gn 179 (186)
T PF04413_consen 141 FLFRPLLSRFDRILAQSEADAERFRK---LGAPPE------RVHVTGN 179 (186)
T ss_dssp HHHHHHGGG-SEEEESSHHHHHHHHT---TT-S--------SEEE---
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHH---cCCCcc------eEEEeCc
Confidence 45677888999999999999999997 788766 6777655
No 212
>PLN02534 UDP-glycosyltransferase
Probab=56.27 E-value=2.5e+02 Score=31.09 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=44.8
Q ss_pred HHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----ccccc-ccCcceEEEccc-cccccCCC----CCCHHH
Q 007873 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSF-SVDCEAVD----PVDVAA 541 (586)
Q Consensus 472 ~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v-~~g~~G~~~~~~-~~~~~~v~----~~d~~~ 541 (586)
.+++.+++..+-+. +=.++++||+.+|+|+|+-...+ ....+ +.-+.|+-+|.- ..+...-+ .-+.++
T Consensus 356 ~iL~h~~v~~fvtH--~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~ee 433 (491)
T PLN02534 356 LILSHPAIGGFLTH--CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDE 433 (491)
T ss_pred HHhcCCccceEEec--CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHH
Confidence 37887777333222 33467999999999999987533 22222 233445543210 00000000 136899
Q ss_pred HHHHHHHHHH
Q 007873 542 VSTTVRRALA 551 (586)
Q Consensus 542 la~~I~~ll~ 551 (586)
++++|++++.
T Consensus 434 v~~~v~~~m~ 443 (491)
T PLN02534 434 VEKAVKTLMD 443 (491)
T ss_pred HHHHHHHHhc
Confidence 9999999995
No 213
>PRK10037 cell division protein; Provisional
Probab=56.27 E-value=13 Score=37.07 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=27.2
Q ss_pred ceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|||+-|... .||+|. ...+|+.+|+++|++|.+|=.
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 666555543 577765 568899999999999999943
No 214
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=55.63 E-value=1.9e+02 Score=27.71 Aligned_cols=105 Identities=13% Similarity=0.014 Sum_probs=64.1
Q ss_pred EEEecCc-cccCHHHHHHHHhhcccCCeEEEEEeCCC---hhhHHHHHHHHHHCCCceEEEecc---ChHHHHHHHHhcc
Q 007873 406 GFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILYPEKARGVAKF---NIPLAHMIIAGAD 478 (586)
Q Consensus 406 ~~iGrl~-~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~---~~~~~~l~~l~~~~~~~v~~~~~~---~~~~~~~~l~~aD 478 (586)
+.+|... .....+.+-+.+......+.+++++.+.. ..+.+...+...+++.++.....+ +.++..+.+..||
T Consensus 3 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad 82 (210)
T cd03129 3 LISGGGLDKAHARPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEAD 82 (210)
T ss_pred EEEcCCcCccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCC
Confidence 3344333 34444555555555543567788887754 234444555555566555545444 3467778999999
Q ss_pred EEEEcC--------CCCC--CcHHHHHHHHcCCcEEEcCCcC
Q 007873 479 FILIPS--------RFEP--CGLIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 479 i~l~PS--------~~E~--~gl~~lEAma~G~PvI~s~~gg 510 (586)
+++++- .+.. .--.+.+...-|+|++.++.|.
T Consensus 83 ~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 83 GIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGA 124 (210)
T ss_pred EEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH
Confidence 999984 1222 3334778888899999988665
No 215
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=55.11 E-value=15 Score=36.92 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=28.8
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
++||||+.+..-.. +.-+..|.++|.+.| +|.|++|..+
T Consensus 4 ~~M~ILltNDDGi~-------a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 4 KKPHILVCNDDGIE-------GEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCCEEEEECCCCCC-------CHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 46999988876221 223667889998888 8999999754
No 216
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=52.98 E-value=20 Score=33.02 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=31.2
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
||+|++-+. ..|-.+.....+|..|.+.||+|.+.-.
T Consensus 1 Mk~LIlYst-----r~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYST-----RDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEec-----CCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 788887553 4788899999999999999999999843
No 217
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=52.75 E-value=3.2e+02 Score=29.21 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCC--ceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPE--KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~--~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
..+.+...-.+........+.+....++ ++.....-..+++-..+++||+.|-.-.+ .++=||+.|+|+|+-.
T Consensus 237 ~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~ 311 (385)
T COG2327 237 ALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIA 311 (385)
T ss_pred cceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEe
Confidence 4444443333332234445555555442 22221111123444589999998864432 3444999999999987
Q ss_pred CcCcc-ccccc-CcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 508 TGGLV-DTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 508 ~gg~~-e~v~~-g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
...=. .+.++ |..|+. ..+.+.|.+.+.+.+.+.+.+
T Consensus 312 Y~~K~~~l~~~~gl~~~~--------~~i~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 312 YDPKVRGLMQDLGLPGFA--------IDIDPLDAEILSAVVLERLTK 350 (385)
T ss_pred ecHHHHHHHHHcCCCccc--------ccCCCCchHHHHHHHHHHHhc
Confidence 54322 22221 222332 235788899999999888876
No 218
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=52.30 E-value=48 Score=34.56 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=55.0
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccCh------------HHHHHHHHhccEEEE--cCCCCCCcHH---H
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI------------PLAHMIIAGADFILI--PSRFEPCGLI---Q 493 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~------------~~~~~~l~~aDi~l~--PS~~E~~gl~---~ 493 (586)
.-.+-|+|-|. .-..+.+..+.++-++..+-.+.. ..+.++++.||++++ |..-|+-|+. .
T Consensus 142 gkTvGIiG~G~--IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~ 219 (324)
T COG0111 142 GKTVGIIGLGR--IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEE 219 (324)
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHH
Confidence 44566777776 555666666666666666555422 236679999999864 6666776555 6
Q ss_pred HHHHHcCCcEEEcCCcCccc
Q 007873 494 LHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e 513 (586)
+..|--|.-.|-+..|++.|
T Consensus 220 ~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 220 LAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HhhCCCCeEEEECCCcceec
Confidence 77777788778888888666
No 219
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=51.93 E-value=19 Score=36.94 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCCceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|++|||+-|. . .||+|. ...+|+.+|+++|++|.+|=.
T Consensus 1 ~~~~~~iai~-~------KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 1 MSKLRQIAFY-G------KGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred CCcceEEEEE-C------CCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5678876664 2 466665 578899999999999999943
No 220
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.37 E-value=2.7e+02 Score=27.91 Aligned_cols=90 Identities=10% Similarity=-0.079 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcccCCeEEEEEeCC-----------C-hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcC
Q 007873 417 SDILAAAIPHFIKENVQIIVLGTG-----------K-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPS 484 (586)
Q Consensus 417 ~d~Ll~A~~~l~~~~v~lvIvG~g-----------~-~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS 484 (586)
-+.+++.+..+++..++++..|.= . .+-.+.|.+..++++-.+. .-.++...+..+...+|++=+||
T Consensus 28 ~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~-Tev~d~~~v~~~~e~vdilqIgs 106 (250)
T PRK13397 28 YDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSV-SEIMSERQLEEAYDYLDVIQVGA 106 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEE-EeeCCHHHHHHHHhcCCEEEECc
Confidence 344555555554457788877751 1 1245566777777763232 33456777777777899999999
Q ss_pred CCCCCcHHHHHHH-HcCCcEEEcCC
Q 007873 485 RFEPCGLIQLHAM-RYGTVPIVAST 508 (586)
Q Consensus 485 ~~E~~gl~~lEAm-a~G~PvI~s~~ 508 (586)
+. ..-..+++++ ..|+||+.+.-
T Consensus 107 ~~-~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 107 RN-MQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred cc-ccCHHHHHHHHccCCeEEEeCC
Confidence 83 3335566666 46999998874
No 221
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=50.81 E-value=57 Score=30.57 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=49.3
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChH------------HHHHHHHhccEEEE--cCCCCC---CcHHH
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP------------LAHMIIAGADFILI--PSRFEP---CGLIQ 493 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~------------~~~~~l~~aDi~l~--PS~~E~---~gl~~ 493 (586)
+-.+-|+|-|. .-+.+.++...++-++..+-....+ .+.++++.||++++ |..-|+ ++-..
T Consensus 36 g~tvgIiG~G~--IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~ 113 (178)
T PF02826_consen 36 GKTVGIIGYGR--IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEF 113 (178)
T ss_dssp TSEEEEESTSH--HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHH
T ss_pred CCEEEEEEEcC--CcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeee
Confidence 44555666655 4444444444555445444444322 23469999999876 433344 56678
Q ss_pred HHHHHcCCcEEEcCCcCccc
Q 007873 494 LHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e 513 (586)
++.|--|.-+|.+..|++.|
T Consensus 114 l~~mk~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVD 133 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-
T ss_pred eeccccceEEEeccchhhhh
Confidence 99999999999998888665
No 222
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=50.04 E-value=2.4e+02 Score=27.27 Aligned_cols=91 Identities=10% Similarity=0.111 Sum_probs=50.9
Q ss_pred cccCHHHHHHHHhhcccC--CeEEEEEeCCC-hhhHHHHHHHH--HHCCCceEEEec-cChHHHHHHHHhccEEEEcCCC
Q 007873 413 EQKGSDILAAAIPHFIKE--NVQIIVLGTGK-KPMEKQLEQLE--ILYPEKARGVAK-FNIPLAHMIIAGADFILIPSRF 486 (586)
Q Consensus 413 ~~KG~d~Ll~A~~~l~~~--~v~lvIvG~g~-~~~~~~l~~l~--~~~~~~v~~~~~-~~~~~~~~~l~~aDi~l~PS~~ 486 (586)
...-.+.+.+.+..+.+. .+.++...... ........... .....++..... .+..+...+++.||++|-...+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH 267 (286)
T PF04230_consen 188 NEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH 267 (286)
T ss_pred hhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH
Confidence 444566666777766552 34444333322 22222222211 112222333333 3667778899999999977664
Q ss_pred CCCcHHHHHHHHcCCcEEEcCC
Q 007873 487 EPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 487 E~~gl~~lEAma~G~PvI~s~~ 508 (586)
..+=|+++|+|+|+-+.
T Consensus 268 -----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 -----GAILALSLGVPVIAISY 284 (286)
T ss_pred -----HHHHHHHcCCCEEEEec
Confidence 33448999999998653
No 223
>PRK09739 hypothetical protein; Provisional
Probab=49.98 E-value=32 Score=32.89 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|||++|... |. ..+-....+..+.+.+.+.||+|+++-..
T Consensus 1 ~~mmkiliI~~s--p~-~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAH--PR-HDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcC--CC-CCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 346899999875 53 23334456666888888899999988543
No 224
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=49.23 E-value=18 Score=37.05 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=27.5
Q ss_pred ceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++.+ .||+|. ...+|+.+|+++|++|.+|=..
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 7877766 466654 6788999999999999999543
No 225
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=48.34 E-value=21 Score=35.57 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=28.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+.. |=.+..+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 899988765 222334777999999988 9999999754
No 226
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=47.77 E-value=44 Score=36.88 Aligned_cols=82 Identities=10% Similarity=-0.088 Sum_probs=50.5
Q ss_pred eEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----ccccc-ccCcceEEEccccccccC
Q 007873 459 ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEA 533 (586)
Q Consensus 459 v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v-~~g~~G~~~~~~~~~~~~ 533 (586)
+....+.++. ++|+...+..+-+. +=.++.+||+.+|+|+|+....+ ....+ ..-+.|..+. .
T Consensus 340 ~vv~~W~PQ~---~iL~h~~vg~FitH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~-------~ 407 (481)
T PLN02992 340 FVVPSWAPQA---EILAHQAVGGFLTH--CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSD-------D 407 (481)
T ss_pred EEEeecCCHH---HHhCCcccCeeEec--CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEec-------C
Confidence 4434444443 36777665332222 23367999999999999986433 44454 3445676551 0
Q ss_pred C-CCCCHHHHHHHHHHHHHh
Q 007873 534 V-DPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 534 v-~~~d~~~la~~I~~ll~~ 552 (586)
- ..-+.++++++|.+++.+
T Consensus 408 ~~~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 408 PKEVISRSKIEALVRKVMVE 427 (481)
T ss_pred CCCcccHHHHHHHHHHHhcC
Confidence 0 124789999999999975
No 227
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=46.96 E-value=36 Score=32.67 Aligned_cols=37 Identities=24% Similarity=0.071 Sum_probs=28.8
Q ss_pred CCceEEEEeccccCccccchHHHHh--hhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~--~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+++||++-- +||.+.+- .+|.+.|.+.||+|.++...
T Consensus 4 ~~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 467777654 47777664 78999999999999998765
No 228
>PRK09271 flavodoxin; Provisional
Probab=46.33 E-value=33 Score=31.57 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
|||+++-.+ .+|.++.+...+++.|.+.|++|.+.-
T Consensus 1 mkv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYAS-----LSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEc-----CCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 788777643 378999999999999999999987664
No 229
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=46.20 E-value=34 Score=32.67 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=29.7
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||++.|++.- + .-|-.....+|+.+|+++|++|.+|=.
T Consensus 16 ~~kvI~v~s~k-g---G~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 16 EIKVLLITSVK-P---GEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CCcEEEEecCC-C---CCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 47877777541 1 345666899999999999999999854
No 230
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.11 E-value=3.8e+02 Score=28.25 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=63.0
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC------------hhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK------------KPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~------------~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
+.++..| -.--..-+.+++.+..+++..++++..|.-+ ++-.+.+.+...+.+-.+. .-.++...+
T Consensus 101 ~l~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~-tev~d~~~v 178 (352)
T PRK13396 101 PVVVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGII-TEVMDAADL 178 (352)
T ss_pred eEEEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEE-EeeCCHHHH
Confidence 4444544 3344556667777777766566776655311 2344566666667763232 334566666
Q ss_pred HHHHHhccEEEEcCCC-CCCcHHHHHHH-HcCCcEEEcC
Q 007873 471 HMIIAGADFILIPSRF-EPCGLIQLHAM-RYGTVPIVAS 507 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~-E~~gl~~lEAm-a~G~PvI~s~ 507 (586)
..+...+|++-++|+. .+++ ++++. ..|+||+.+.
T Consensus 179 ~~~~~~~d~lqIga~~~~n~~--LL~~va~t~kPVllk~ 215 (352)
T PRK13396 179 EKIAEVADVIQVGARNMQNFS--LLKKVGAQDKPVLLKR 215 (352)
T ss_pred HHHHhhCCeEEECcccccCHH--HHHHHHccCCeEEEeC
Confidence 6666779999999984 4444 45555 6799999887
No 231
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=45.87 E-value=85 Score=23.06 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
+.|.+.|.-+......++++...+++++..... ..++.+|++.....- ...+|...|+|+|..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~----------~~~thvI~~~~~~~~--~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS----------KKTTHVIVGSDAGPK--KLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc----------CCceEEEECCCCCch--HHHHHHHcCCeEecHH
Confidence 467788874333677888888888876653221 467777777553221 2778889999988654
No 232
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=45.73 E-value=22 Score=36.71 Aligned_cols=36 Identities=36% Similarity=0.682 Sum_probs=27.0
Q ss_pred ceEEEEeccccCccccchHHHH--hhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~--~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||++|++. .||+|.- ...+|..++++|++|.+++..
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~D 38 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTD 38 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESS
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecC
Confidence 78999985 4777664 445888899999999999865
No 233
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=45.58 E-value=59 Score=32.55 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=29.7
Q ss_pred HHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCc
Q 007873 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL 511 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~ 511 (586)
+.+++..+|+++.-+..+...-.+..|+..|+|+|+..+|..
T Consensus 54 l~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 54 LEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred HHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 344566789988666555555567788899999998765543
No 234
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=45.36 E-value=43 Score=29.50 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=29.6
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCC-CeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G-h~V~vvt~~ 127 (586)
||+.++-.. +|+ .--......++|+++.+.| ++|.++-..
T Consensus 1 m~~~Ivvt~-ppY--g~q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTG-PPY--GTESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEec-CCC--ccHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 788888776 676 2244567889999999997 677777544
No 235
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=44.23 E-value=3.5e+02 Score=27.77 Aligned_cols=135 Identities=10% Similarity=0.091 Sum_probs=66.9
Q ss_pred HHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--ChHHHHHHHHhccEEE--EcCC---------C
Q 007873 420 LAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGADFIL--IPSR---------F 486 (586)
Q Consensus 420 Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~aDi~l--~PS~---------~ 486 (586)
+..++....+..+++.+-.+... -...+.+....++..-.+++.. ..+.+.+++..-++.+ +|+. +
T Consensus 182 ~~~~~~~a~~~gl~~t~HaGE~~-~~~~~~~ai~~l~~~RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~ 260 (331)
T PF00962_consen 182 FAPAFRKAREAGLKLTVHAGETG-GPEHIRDAILLLGADRIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVPSY 260 (331)
T ss_dssp HHHHHHHHHHTT-EEEEEESSSS-THHHHHHHHHTST-SEEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTG
T ss_pred HHHHHhhhcccceeecceecccC-CcccccchhhhccceeecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceeeec
Confidence 55666665556777766333211 1223444433344444556654 3455556777777654 4431 1
Q ss_pred CCCcHHHHHHHHcCCcE-EEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007873 487 EPCGLIQLHAMRYGTVP-IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG 565 (586)
Q Consensus 487 E~~gl~~lEAma~G~Pv-I~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~ 565 (586)
+..| +.+-+..|+|| |+||..|+-. ..=.+++..+.... ....+.+.++.+|+
T Consensus 261 ~~hP--~~~~~~~gv~v~i~TDd~~~~~----------------------~~l~~ey~~~~~~~--~l~~~~l~~l~~ns 314 (331)
T PF00962_consen 261 EEHP--LRKLLDAGVPVSINTDDPGVFG----------------------TTLSDEYYLAAEAF--GLSLADLKQLARNS 314 (331)
T ss_dssp GG-C--HHHHHHTT-EEEE--BSHHHHT-----------------------SHHHHHHHHHHHH--T--HHHHHHHHHHH
T ss_pred chhH--HHHHHHcCCceeccCCCccccC----------------------CCcHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 2233 45557899998 6666544331 12234444444333 22367888999999
Q ss_pred HHhcCCHHHHHHHHHH
Q 007873 566 MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 566 ~~~~fsw~~~a~~~~~ 581 (586)
+...|--+..-+++++
T Consensus 315 i~~sf~~~~~K~~ll~ 330 (331)
T PF00962_consen 315 IEASFLSEEEKAELLA 330 (331)
T ss_dssp HHCSSS-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhc
Confidence 8877776666666654
No 236
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.18 E-value=88 Score=31.15 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=61.7
Q ss_pred cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEE--EeccChHHHHH-----HHHhccEEEEcC---
Q 007873 415 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARG--VAKFNIPLAHM-----IIAGADFILIPS--- 484 (586)
Q Consensus 415 KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~--~~~~~~~~~~~-----~l~~aDi~l~PS--- 484 (586)
-|.|++.+.++...+.+.++.++|+.+...++..+.+..+++.++.+ .+.|+.++..+ --+++|++++--
T Consensus 89 ~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 89 AGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred ChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 38999999888876667899999988766677777777777545443 34554333222 224679888742
Q ss_pred CCCCCcHHHHHHHHcCCcEEEcCCcCccccccc
Q 007873 485 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 517 (586)
Q Consensus 485 ~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~ 517 (586)
..|-|-....+- .+.+++ --+||.-|++..
T Consensus 169 kQE~~~~~~~~~--~~~~v~-~gvGg~fD~~aG 198 (243)
T PRK03692 169 KQEIFMRDCRLV--YPDALY-MGVGGTYDVFTG 198 (243)
T ss_pred HHHHHHHHHHHh--CCCCEE-EEeCeEEEEecC
Confidence 345553332222 244443 347777776643
No 237
>PRK13671 hypothetical protein; Provisional
Probab=43.86 E-value=80 Score=32.46 Aligned_cols=143 Identities=13% Similarity=0.184 Sum_probs=71.2
Q ss_pred EEEEEecCcc-ccCHHHHHHHHhhcccC-CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEE
Q 007873 404 VIGFIGRLEE-QKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 404 ~i~~iGrl~~-~KG~d~Ll~A~~~l~~~-~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
+++.|..+.| +.|+-.+++.+.+.... .+-++..|+-.. .+ .....-.+..-. ...-.++|++|
T Consensus 2 ~~GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~q------------rg-~pa~~~~~~R~~-ma~~~G~DLVi 67 (298)
T PRK13671 2 AIGIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQ------------RG-EIAVASFEKRKK-IALKYGVDKVI 67 (298)
T ss_pred ceeEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCC------------CC-CCCCCCHHHHHH-HHHHcCCCEEE
Confidence 3566777776 88999999888876553 344555554320 00 000001111111 12445688877
Q ss_pred -EcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 007873 482 -IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE 560 (586)
Q Consensus 482 -~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~ 560 (586)
+|.. |...-.|..|.|-.-+....| .+-++||+ +.+|.+.+.+...-+.+. ++.+++
T Consensus 68 ELP~~---~a~~sAe~FA~gaV~lL~~lg---------vd~l~FGs--------E~~d~~~l~~~a~~l~~~--~~~~~~ 125 (298)
T PRK13671 68 KLPFE---YATQAAHIFAKGAIKKLNKEK---------IDKLIFGS--------ESNDIELMYKIANTIKEN--EEEYNQ 125 (298)
T ss_pred eccHH---HHhhchHHHHHHHHHHHHHcC---------CCEEEECC--------CCCCHHHHHHHHHHHHhC--cHHHHH
Confidence 3332 333333444444333333332 23344442 345666776666555554 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007873 561 MMKNGMAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 561 ~~~~~~~~~fsw~~~a~~~~~~ 582 (586)
.-+..+.+-.|+.....+.+++
T Consensus 126 ~l~~~l~~G~Sy~~a~~~al~~ 147 (298)
T PRK13671 126 LLKKNLKQGYSFPKASSLALKE 147 (298)
T ss_pred HHHHHHHCCCCHHHHHHHHHHH
Confidence 5555555556665555544433
No 238
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=43.63 E-value=4.6e+02 Score=28.48 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=59.9
Q ss_pred ccEEEEcCCCC--CCcHHHHHHHHcCCcEEEcCCcCccccccc----CcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 477 ADFILIPSRFE--PCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 477 aDi~l~PS~~E--~~gl~~lEAma~G~PvI~s~~gg~~e~v~~----g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
-+-+|++-.-| ..|..+-=+...|+|+..-.+|--.+-+.. ....-+ +--+|+..|.+.+++.+
T Consensus 241 ~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~ri----------lgmgDi~~L~ek~~~~~ 310 (429)
T TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKL----------LGMGDIEGLIDKVQDLK 310 (429)
T ss_pred CcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHH----------hcCCCcHHHHHHHHHhh
Confidence 34566665544 356677777889999988777653332221 111111 14578888888888877
Q ss_pred HhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 551 ATYGTQALAEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
+. +..+++.+.-+...|+.+.+.+++.+..
T Consensus 311 ~~---~~~~~~~~k~~~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 311 LD---DNEKALIEKLKEGTFTLRDMYEQFQNLL 340 (429)
T ss_pred hH---HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 64 3345566655667899999999987754
No 239
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=43.50 E-value=67 Score=33.22 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=35.2
Q ss_pred HHHHHHHhccEEEE--cCCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 469 LAHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 469 ~~~~~l~~aDi~l~--PS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
.+.++++.||++++ |..-|+ ++-..++.|--|.-+|-+..|++.|
T Consensus 189 ~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVD 238 (311)
T PRK08410 189 SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVN 238 (311)
T ss_pred cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 46679999999865 444455 5666899999999999999888766
No 240
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=43.31 E-value=3.2e+02 Score=27.21 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=58.8
Q ss_pred EecCccccCHHHHHHHHhhccc-CCeEEEEEeCCC---hhhHHHHHHHHHHCCCceEEEecc-C-----hHHHHHHHHhc
Q 007873 408 IGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK---KPMEKQLEQLEILYPEKARGVAKF-N-----IPLAHMIIAGA 477 (586)
Q Consensus 408 iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~---~~~~~~l~~l~~~~~~~v~~~~~~-~-----~~~~~~~l~~a 477 (586)
+|.=+...+-..+.+.+-++.. ++-+++|+.+.. ..+.+...+.-.+++.+......+ + .+...+.+..|
T Consensus 4 iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~a 83 (250)
T TIGR02069 4 IGGAEDKVGDREILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNA 83 (250)
T ss_pred EeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhC
Confidence 4443333344445565555543 566777776533 233334444444455322222232 2 23445688999
Q ss_pred cEEEEcC--------CCCCCcH--HHHHHHHcCCcEEEcCCcCc
Q 007873 478 DFILIPS--------RFEPCGL--IQLHAMRYGTVPIVASTGGL 511 (586)
Q Consensus 478 Di~l~PS--------~~E~~gl--~~lEAma~G~PvI~s~~gg~ 511 (586)
|++.+.- .+...++ .+-++...|+|++.++.|.+
T Consensus 84 d~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 84 TGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred CEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 9998864 2344444 45678889999999987764
No 241
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=43.25 E-value=3.7e+02 Score=27.19 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHhhcccCCe-EE-EEEeCCCh---hhHHHHHHHHHHCCCceEEEeccChHHHHH----HHHhccEEEEc
Q 007873 413 EQKGSDILAAAIPHFIKENV-QI-IVLGTGKK---PMEKQLEQLEILYPEKARGVAKFNIPLAHM----IIAGADFILIP 483 (586)
Q Consensus 413 ~~KG~d~Ll~A~~~l~~~~v-~l-vIvG~g~~---~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~----~l~~aDi~l~P 483 (586)
+.--+...++.+.++. |++ ++ ++..+... ...+.+++.+.+++.++.....-+.+++.. +-...|+++++
T Consensus 113 ~~~~~~~~l~l~~~l~-P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~ 191 (294)
T PF04392_consen 113 ERPPIEKQLELIKKLF-PDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLL 191 (294)
T ss_dssp E---HHHHHHHHHHHS-TT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-
T ss_pred CCcCHHHHHHHHHHhC-CCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEE
Confidence 3344555555555553 322 34 34444432 345566666777765454433334333332 44567888777
Q ss_pred CCC---CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceE
Q 007873 484 SRF---EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 522 (586)
Q Consensus 484 S~~---E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~ 522 (586)
... ..+...+..+..+++|+++.. ...+..|..|-
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~iPv~~~~----~~~v~~Gal~~ 229 (294)
T PF04392_consen 192 PDNLVDSNFEAILQLANEAKIPVFGSS----DFYVKAGALGG 229 (294)
T ss_dssp S-HHHHHTHHHHHHHCCCTT--EEESS----HHHHCTT-SEE
T ss_pred CCcchHhHHHHHHHHHHhcCCCEEECC----HHHhcCCcEEE
Confidence 542 344555667778999999986 34455554443
No 242
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=43.09 E-value=27 Score=34.99 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=27.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..-.. .-| +..|+++|++ +|+|+|++|..+
T Consensus 1 M~ILvtNDDGi~---apG----l~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13933 1 MNILLTNDDGIN---AEG----INTLAELLSK-YHEVIIVAPENQ 37 (253)
T ss_pred CeEEEEcCCCCC---Chh----HHHHHHHHHh-CCcEEEEccCCC
Confidence 899999876321 223 6678888865 589999999754
No 243
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=42.91 E-value=28 Score=37.53 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=29.3
Q ss_pred CCceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.+|+|+-|... .||+|. ...+||.+|+.+|++|.+|=.
T Consensus 119 ~~~~vIav~n~------KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 119 EHLQVIAVTNF------KGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CCceEEEEEcC------CCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 46787777654 566665 678899999999999999843
No 244
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=42.80 E-value=29 Score=37.02 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++|+|+.|+.. .||+|. ...+||.+|+++|++|.+|=..
T Consensus 102 ~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 56887777754 466654 6778999999999999999543
No 245
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=42.77 E-value=31 Score=33.99 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=28.2
Q ss_pred ceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+-|... .||+|. ...+|+.+|+++|.+|.++=..
T Consensus 1 M~iI~v~n~------KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 1 MKLLTFCSF------KGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred CeEEEEECC------CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 666666543 677776 5677999999999999999654
No 246
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=42.76 E-value=3.7e+02 Score=27.08 Aligned_cols=125 Identities=14% Similarity=0.002 Sum_probs=71.9
Q ss_pred CCcE-EEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--ChHHHHHHHHhc
Q 007873 401 NIPV-IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGA 477 (586)
Q Consensus 401 ~~~~-i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~a 477 (586)
+.|+ ++..-+.-.+.|++.+++.+.+. .+.=+++=+=+.+....+.+...+++-.....+.. +.+.+..+.+.+
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~a---GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a 167 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQA---GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA 167 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHc---CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC
Confidence 3353 33334444577999999988876 45555555444333445555666676555555555 346777899999
Q ss_pred cEEEE-cCCC------CCCcHHHHHHH-----HcCCcEEEcCCcCcc------cccccCcceEEEcccccc
Q 007873 478 DFILI-PSRF------EPCGLIQLHAM-----RYGTVPIVASTGGLV------DTVEEGFTGFQMGSFSVD 530 (586)
Q Consensus 478 Di~l~-PS~~------E~~gl~~lEAm-----a~G~PvI~s~~gg~~------e~v~~g~~G~~~~~~~~~ 530 (586)
+-||+ -|+. +.+.-.+.+.. ..++|+++ . .|+. ++...|..|+++|+-.++
T Consensus 168 ~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v-G-FGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 168 PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL-G-FGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE-E-CCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 83333 2332 12333344444 46888876 3 3322 234456889999865544
No 247
>PRK05866 short chain dehydrogenase; Provisional
Probab=42.64 E-value=43 Score=34.05 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=25.8
Q ss_pred ecCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 80 VCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 80 ~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.++++++|++++. .||+| ..+++.|+++|++|.++..+
T Consensus 36 ~~~~~k~vlItGa-------sggIG---~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 36 VDLTGKRILLTGA-------SSGIG---EAAAEQFARRGATVVAVARR 73 (293)
T ss_pred cCCCCCEEEEeCC-------CcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 3445556665553 36665 45788889999999888654
No 248
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=42.25 E-value=28 Score=34.84 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=26.9
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~ 130 (586)
||||+.+..-.- .-| +..|.++|++ +|+|.|++|..+|
T Consensus 1 M~ILlTNDDGi~---a~G----i~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGIT---SPG----IIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCCC---CHH----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 899998876211 223 6678888865 5899999998543
No 249
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=41.61 E-value=29 Score=34.02 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=26.8
Q ss_pred ceEEEEeccccCccccchHH--HHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~--~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+-|... .||+| +...+|+.+|+++|++|.++=..
T Consensus 1 m~iI~v~s~------KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 1 MKVIAIVGV------KGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CcEEEEEeC------CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 665555432 35544 57788999999999999999554
No 250
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.54 E-value=2.3e+02 Score=27.56 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=41.0
Q ss_pred cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHH-HHHhccEEEEcCCC
Q 007873 415 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPSRF 486 (586)
Q Consensus 415 KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~-~l~~aDi~l~PS~~ 486 (586)
...+..++.++.+.+..++.+=++-..+.-.+.++++.+++++.+.+.+.. +.+++.. +-++||+++.|...
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~ 97 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLT 97 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCC
Confidence 445555555555554333433333222234566777777777666666665 3444433 66788888888753
No 251
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=41.21 E-value=29 Score=34.57 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=22.3
Q ss_pred cchHH--HHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~--~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| +...+||.+|+++|++|.++=..
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 35555 46788999999999999999443
No 252
>PRK06932 glycerate dehydrogenase; Provisional
Probab=41.04 E-value=72 Score=33.02 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHhccEEEE--cCCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~--PS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++ |...|+ ++-..++.|--|.-+|-+..|++.|
T Consensus 191 l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vd 239 (314)
T PRK06932 191 FEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVD 239 (314)
T ss_pred HHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 5679999999875 444444 5666888998899999999888766
No 253
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=40.51 E-value=52 Score=36.44 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=90.2
Q ss_pred HHHHhCCCCCCCCcEEEEEecCccccCHHH----HHHHHhhccc-C----CeEEEEEeCCC-h------hhHHHHHHHHH
Q 007873 390 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDI----LAAAIPHFIK-E----NVQIIVLGTGK-K------PMEKQLEQLEI 453 (586)
Q Consensus 390 l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~----Ll~A~~~l~~-~----~v~lvIvG~g~-~------~~~~~l~~l~~ 453 (586)
+.+++|...+++...=+.+-|+.++|...+ ++-.+.++++ + --+.+++|+-. + ...+.+...+.
T Consensus 551 le~e~~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~e~~k~fvprtvm~GGKaapgY~mAK~Iiklit~V~d 630 (843)
T KOG2099|consen 551 LEKEYGVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKEEPAKAFVPRTVMIGGKAAPGYHMAKLIIKLITAVAD 630 (843)
T ss_pred HHHHhCcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCceEEEEcCccCchhHHHHHHHHHHHHHHH
Confidence 455677665554444466788999887543 3344444444 1 23456666532 2 12222222222
Q ss_pred HC------C--CceEEEeccChHHHHHHHHhccEEEEcC--CCCCCcHHHHHHHHcCCcEEEcCCcCccccccc--Ccce
Q 007873 454 LY------P--EKARGVAKFNIPLAHMIIAGADFILIPS--RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTG 521 (586)
Q Consensus 454 ~~------~--~~v~~~~~~~~~~~~~~l~~aDi~l~PS--~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G 521 (586)
.. + .++.+...+....+..++-++|+-=.-| -.|..|..-+--|..|+-.|.|-.|..+|+-++ .+|-
T Consensus 631 vVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGANVEm~eE~GeeN~ 710 (843)
T KOG2099|consen 631 VVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEAGEENF 710 (843)
T ss_pred HhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccchHHHHHcCcccE
Confidence 11 1 2577777777777777888888864333 468899998889999999999999999888765 4677
Q ss_pred EEEcccccc
Q 007873 522 FQMGSFSVD 530 (586)
Q Consensus 522 ~~~~~~~~~ 530 (586)
|+||....|
T Consensus 711 FiFG~~~e~ 719 (843)
T KOG2099|consen 711 FIFGMRVED 719 (843)
T ss_pred EEecccHHH
Confidence 888865544
No 254
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=40.27 E-value=45 Score=38.35 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=27.2
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
.+.++|++|+.- .+|+. +|.+|+++|++|+|+=
T Consensus 79 ~~~~~VlIVGgG------IaGLa-----lAlaL~r~Gi~V~V~E 111 (668)
T PLN02927 79 KKKSRVLVAGGG------IGGLV-----FALAAKKKGFDVLVFE 111 (668)
T ss_pred cCCCCEEEECCC------HHHHH-----HHHHHHhcCCeEEEEe
Confidence 356899999964 46776 8999999999999994
No 255
>PLN03015 UDP-glucosyl transferase
Probab=40.26 E-value=5.4e+02 Score=28.32 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----ccccc-ccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v-~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
+|+...+..+-+ .|| ++.+||+.+|+|+|+-...+ ....+ +.-..|+-++.. + .-..-..++++++|
T Consensus 348 vL~h~~vg~fvt---H~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~--~--~~~~v~~e~i~~~v 420 (470)
T PLN03015 348 ILSHRSIGGFLS---HCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSEL--P--SEKVIGREEVASLV 420 (470)
T ss_pred HhccCccCeEEe---cCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEeccc--c--cCCccCHHHHHHHH
Confidence 566555433222 344 57999999999999986533 33333 344556554100 0 00124678999999
Q ss_pred HHHHH
Q 007873 547 RRALA 551 (586)
Q Consensus 547 ~~ll~ 551 (586)
++++.
T Consensus 421 ~~lm~ 425 (470)
T PLN03015 421 RKIVA 425 (470)
T ss_pred HHHHc
Confidence 99995
No 256
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=40.23 E-value=30 Score=34.60 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=26.1
Q ss_pred ceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|+|++. . .||+|. ...+||.+|+++|++|.++=.
T Consensus 1 ~~i~~~-g-------KGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVY-G-------KGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEE-c-------CCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 666666 2 466664 678899999999999999943
No 257
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.91 E-value=34 Score=35.17 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=26.2
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+.+|||.|++. |- .-..++..|++.||+|.++...
T Consensus 2 ~~~m~I~iiG~--------G~---~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGA--------GA---WGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECc--------cH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 46799999874 22 2344899999999999888654
No 258
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=39.81 E-value=50 Score=29.23 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=27.1
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeE-EEEE
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIA 125 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V-~vvt 125 (586)
|++++-.. +|+ .+-.+....++++++.+.||+| .|+-
T Consensus 1 ~~~iv~~~-~P~--~~~~~~~al~~A~aa~~~gh~v~~vFf 38 (127)
T TIGR03012 1 KYTLLVTG-PPY--GTQAASSAYQFAQALLAKGHEIVRVFF 38 (127)
T ss_pred CEEEEEeC-CCC--CcHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 45566554 576 4556778889999999999995 5654
No 259
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=39.71 E-value=2.4e+02 Score=27.07 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=42.8
Q ss_pred EEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHH-HHHhccEEEEcC
Q 007873 407 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPS 484 (586)
Q Consensus 407 ~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~-~l~~aDi~l~PS 484 (586)
-+=|.........+++|+.+ ..++.+=+--..+...+.++.+.+++++-+.+.+.. +.+++.. +-++|++++.|.
T Consensus 12 aVir~~~~~~a~~~~~al~~---gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 12 AVIRGDDPEDAVPIAEALIE---GGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp EEETTSSGGGHHHHHHHHHH---TT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS
T ss_pred EEEEcCCHHHHHHHHHHHHH---CCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC
Confidence 33355544444555555444 355544233222335667777888888877888877 4455443 778899999997
Q ss_pred CC
Q 007873 485 RF 486 (586)
Q Consensus 485 ~~ 486 (586)
..
T Consensus 89 ~~ 90 (196)
T PF01081_consen 89 FD 90 (196)
T ss_dssp --
T ss_pred CC
Confidence 63
No 260
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=39.31 E-value=89 Score=26.50 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEE
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV 462 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~ 462 (586)
|+.+||++|+......+.-.+++.++|+++...
T Consensus 63 P~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai 95 (100)
T PF09949_consen 63 PERKFILIGDSGQHDPEIYAEIARRFPGRILAI 95 (100)
T ss_pred CCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEE
Confidence 677999999965444566677888999877654
No 261
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.07 E-value=2.9e+02 Score=26.61 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=52.3
Q ss_pred CHHHHHHHHhhcccC---CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHH-HHHhccEEEEcCCCCC--
Q 007873 416 GSDILAAAIPHFIKE---NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPSRFEP-- 488 (586)
Q Consensus 416 G~d~Ll~A~~~l~~~---~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~-~l~~aDi~l~PS~~E~-- 488 (586)
..+..++.++.+.+. -+++.+-..+ -.+.++++.+++++-+.+.+.. +.+++.. +-++|++++.|...+.
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~---a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi 90 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPA---ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELL 90 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 455555555555553 3444443222 4567777777787666777776 4444443 6678888888875321
Q ss_pred ---------------CcHHHHHHHHcCCcEE
Q 007873 489 ---------------CGLIQLHAMRYGTVPI 504 (586)
Q Consensus 489 ---------------~gl~~lEAma~G~PvI 504 (586)
-+.=+.+|+.+|.-+|
T Consensus 91 ~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 91 AAANDSDVPLLPGAATPSEVMALREEGYTVL 121 (201)
T ss_pred HHHHHcCCCEeCCCCCHHHHHHHHHCCCCEE
Confidence 2334777788887665
No 262
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=38.88 E-value=35 Score=34.09 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=27.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..-. .+.-+..|.++|.+. |+|.|++|..+
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~~-~~V~VvAP~~~ 37 (250)
T PRK00346 1 MRILLTNDDGI-------HAPGIRALAEALREL-ADVTVVAPDRE 37 (250)
T ss_pred CeEEEECCCCC-------CChhHHHHHHHHHhC-CCEEEEeCCCC
Confidence 89999887621 122367788999988 79999999754
No 263
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=38.83 E-value=33 Score=34.19 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=27.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..- . .+.-+.-|+++|. .+++|+|++|..+
T Consensus 1 mrILlTNDDG-i------~a~Gi~aL~~al~-~~~dV~VVAP~~~ 37 (252)
T COG0496 1 MRILLTNDDG-I------HAPGIRALARALR-EGADVTVVAPDRE 37 (252)
T ss_pred CeEEEecCCc-c------CCHHHHHHHHHHh-hCCCEEEEccCCC
Confidence 8999888762 1 2223667888888 8899999999744
No 264
>PRK07454 short chain dehydrogenase; Provisional
Probab=38.73 E-value=38 Score=32.89 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+..||.++|+.- .||+| ..+++.|.++|++|.++...
T Consensus 3 ~~~~k~vlItG~------sg~iG---~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 3 LNSMPRALITGA------SSGIG---KATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCCEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 345776666532 34544 55888889999999988754
No 265
>PRK06683 hypothetical protein; Provisional
Probab=38.61 E-value=1.9e+02 Score=23.46 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=32.2
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeC-CChhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 416 GSDILAAAIPHFIKENVQIIVLGT-GKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 416 G~d~Ll~A~~~l~~~~v~lvIvG~-g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
|....++++.. .+.+++|+.. -++...+.+.+++..++ +-....++..++
T Consensus 15 G~~~v~kaik~---gkaklViiA~Da~~~~~~~i~~~~~~~~--Vpv~~~~t~~eL 65 (82)
T PRK06683 15 GHKRTLEAIKN---GIVKEVVIAEDADMRLTHVIIRTALQHN--IPITKVESVRKL 65 (82)
T ss_pred cHHHHHHHHHc---CCeeEEEEECCCCHHHHHHHHHHHHhcC--CCEEEECCHHHH
Confidence 67777777765 5788876665 45667778888888776 332333355555
No 266
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.32 E-value=3.2e+02 Score=26.44 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=41.4
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHH-HHHhccEEEEcCC
Q 007873 416 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHM-IIAGADFILIPSR 485 (586)
Q Consensus 416 G~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~-~l~~aDi~l~PS~ 485 (586)
..+..++.++.+.+..++++=+--..+.-.+.++++.+++++-+.+.+.. +.+++.. +-++|++++.|..
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCC
Confidence 45555555555555333333222222234566777777787666777776 4444443 6678888888875
No 267
>PRK07308 flavodoxin; Validated
Probab=38.14 E-value=49 Score=29.74 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.3
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
+|.++.+...++..|.+.|++|.+.-
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999999999999999988764
No 268
>PRK06756 flavodoxin; Provisional
Probab=38.05 E-value=52 Score=29.62 Aligned_cols=37 Identities=5% Similarity=0.161 Sum_probs=30.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|||+++-.. .+|.++.+...+++.|.+.|++|.++-.
T Consensus 2 mkv~IiY~S-----~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFAS-----MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEEC-----CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 687777543 3799999999999999999999987754
No 269
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=37.82 E-value=11 Score=41.45 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=22.0
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 101 GGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 101 GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
++--..+..++++|+++||+|+++++..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4556678899999999999999999863
No 270
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=37.68 E-value=48 Score=31.52 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred ceEEEEeccccCccccchH-HHHhhhhHHHHHhCC-CeEEEEE
Q 007873 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANG-HRVMTIA 125 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~-~~~~~~L~~~L~~~G-h~V~vvt 125 (586)
||||+|... |. ..++. ......+.+++.++| |+|.++=
T Consensus 1 mkiLvI~as--p~-~~~S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINAS--PR-PEGSFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE----SS-TTTSHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcC--CC-CccCHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 899999975 54 22344 445566889999999 9999884
No 271
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=37.67 E-value=71 Score=27.06 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=28.6
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCC---CeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG---HRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G---h~V~vvt~~ 127 (586)
|+|+++... +|+ ..........++..+...| ++|.|+...
T Consensus 1 k~v~~i~~~-~p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPY--DDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 788888876 454 3334667777888999999 999998755
No 272
>CHL00175 minD septum-site determining protein; Validated
Probab=37.51 E-value=42 Score=33.87 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=27.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+||+.|...- + .-|-.+...+|+.+|++.|++|.++=.
T Consensus 15 ~~vi~v~s~K-G---GvGKTt~a~nLA~~La~~g~~vlliD~ 52 (281)
T CHL00175 15 SRIIVITSGK-G---GVGKTTTTANLGMSIARLGYRVALIDA 52 (281)
T ss_pred ceEEEEEcCC-C---CCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4666666541 1 234456788999999999999999843
No 273
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=37.31 E-value=4.4e+02 Score=26.43 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=58.2
Q ss_pred EecCccccCHHHHHHHHhhcccCCeEEEE-------------EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHH
Q 007873 408 IGRLEEQKGSDILAAAIPHFIKENVQIIV-------------LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 474 (586)
Q Consensus 408 iGrl~~~KG~d~Ll~A~~~l~~~~v~lvI-------------vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l 474 (586)
++...--...+.+++.+.++.+...++.. -|-| ++-.+.+++...+++-.+ ..-.++...+..+.
T Consensus 29 IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~-~t~~~d~~~~~~l~ 106 (260)
T TIGR01361 29 IAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLG-EEGLKLLRRAADEHGLPV-VTEVMDPRDVEIVA 106 (260)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccH-HHHHHHHHHHHHHhCCCE-EEeeCChhhHHHHH
Confidence 44455555667777777776542222222 2223 223455777777776322 23345666666666
Q ss_pred HhccEEEEcCCCCCCcHHHHHHH-HcCCcEEEcCC
Q 007873 475 AGADFILIPSRFEPCGLIQLHAM-RYGTVPIVAST 508 (586)
Q Consensus 475 ~~aDi~l~PS~~E~~gl~~lEAm-a~G~PvI~s~~ 508 (586)
..+|++-+||+. ..-..++++. ..|+||+.+..
T Consensus 107 ~~~d~lkI~s~~-~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 107 EYADILQIGARN-MQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred hhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 779999999984 3334455555 57999998874
No 274
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=37.22 E-value=38 Score=34.18 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=27.2
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..-. .+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILlTNDDGi-------~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGV-------HSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 89998887621 1223667888898887 8999999754
No 275
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=36.80 E-value=36 Score=34.03 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=26.4
Q ss_pred ceEEEEeccccCccccchHH--HHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~--~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+|++.+ .||+| +...+||.+|+++|++|.++=..
T Consensus 1 ~~i~v~g--------KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYG--------KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEec--------CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6666663 35555 46788999999999999999543
No 276
>PRK06487 glycerate dehydrogenase; Provisional
Probab=35.99 E-value=82 Score=32.66 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=49.5
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc------ChHHHHHHHHhccEEEE--cCCCCC---CcHHHHHHHHcC
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF------NIPLAHMIIAGADFILI--PSRFEP---CGLIQLHAMRYG 500 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~------~~~~~~~~l~~aDi~l~--PS~~E~---~gl~~lEAma~G 500 (586)
-.+-|+|-|. .-+.+.++...++.++..+-.. ....+.++++.||++++ |...|+ ++-..+..|--|
T Consensus 149 ktvgIiG~G~--IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~g 226 (317)
T PRK06487 149 KTLGLLGHGE--LGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPG 226 (317)
T ss_pred CEEEEECCCH--HHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCC
Confidence 3555566655 3334444444444334332211 11135679999999875 444444 666789999999
Q ss_pred CcEEEcCCcCccc
Q 007873 501 TVPIVASTGGLVD 513 (586)
Q Consensus 501 ~PvI~s~~gg~~e 513 (586)
.-+|-+..|++.|
T Consensus 227 a~lIN~aRG~vVd 239 (317)
T PRK06487 227 ALLINTARGGLVD 239 (317)
T ss_pred eEEEECCCccccC
Confidence 9999999998776
No 277
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=35.87 E-value=34 Score=35.33 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=29.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+|+-. |.....--.+....|..+..++||+|.++.+.
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 89999985 22222222345777999999999999999987
No 278
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=35.43 E-value=46 Score=35.23 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.+|||++. ||.|-+-..|++.|.++||+|..+...
T Consensus 20 ~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICIT----------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 57898865 444545566999999999999998743
No 279
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=34.94 E-value=1.9e+02 Score=24.48 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHHHhhcccCCeEEE-EEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCCCCCcHHHHHHH
Q 007873 421 AAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAM 497 (586)
Q Consensus 421 l~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~E~~gl~~lEAm 497 (586)
+.++... .++++++ ++... .+..++..++++ +. .|+. ..++++ ..|++++.+....-.-.+.+++
T Consensus 16 ~~~~~~~-~~~~~v~~v~d~~----~~~~~~~~~~~~--~~---~~~~--~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l 83 (120)
T PF01408_consen 16 LRALLRS-SPDFEVVAVCDPD----PERAEAFAEKYG--IP---VYTD--LEELLADEDVDAVIIATPPSSHAEIAKKAL 83 (120)
T ss_dssp HHHHHHT-TTTEEEEEEECSS----HHHHHHHHHHTT--SE---EESS--HHHHHHHTTESEEEEESSGGGHHHHHHHHH
T ss_pred HHHHHhc-CCCcEEEEEEeCC----HHHHHHHHHHhc--cc---chhH--HHHHHHhhcCCEEEEecCCcchHHHHHHHH
Confidence 4444443 2567766 34433 234555566666 33 3332 334666 6899998888777777788999
Q ss_pred HcCCcEEEcC
Q 007873 498 RYGTVPIVAS 507 (586)
Q Consensus 498 a~G~PvI~s~ 507 (586)
..|++|++-.
T Consensus 84 ~~g~~v~~EK 93 (120)
T PF01408_consen 84 EAGKHVLVEK 93 (120)
T ss_dssp HTTSEEEEES
T ss_pred HcCCEEEEEc
Confidence 9999988865
No 280
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.81 E-value=49 Score=32.83 Aligned_cols=37 Identities=32% Similarity=0.554 Sum_probs=27.5
Q ss_pred ceEEEEeccccCccccchHHH--HhhhhHHHHH-hCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALA-ANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~-~~Gh~V~vvt~~ 127 (586)
|+|+-|... .||+|. ...+|+.+|+ ..||+|.++=..
T Consensus 2 ~~iI~v~n~------KGGvGKTT~a~nLa~~La~~~~~kVLliDlD 41 (259)
T COG1192 2 MKIIAVANQ------KGGVGKTTTAVNLAAALAKRGGKKVLLIDLD 41 (259)
T ss_pred CEEEEEEec------CCCccHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 676666654 577765 6778999999 566999999543
No 281
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=34.75 E-value=59 Score=32.81 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=22.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
++|+| .++++.|+++||+|.+++.+-+
T Consensus 15 SsGIG---~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 15 SSGIG---AELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeCcHH
Confidence 47776 5699999999999999998743
No 282
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.72 E-value=3.6e+02 Score=24.66 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=41.7
Q ss_pred HHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccc-----ccccCcceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD-----TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 473 ~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e-----~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
-+..+|+++..+..+.-...+.+....+.+|-+.+....-+ ++..+. +.++ .-..+..-.++..|+
T Consensus 67 dl~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~~~~f~~pa~v~~~~--l~ia-------isT~G~sP~la~~lr 137 (157)
T PRK06719 67 DIKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGTESSFHTPGVIRNDE--YVVT-------ISTSGKDPSFTKRLK 137 (157)
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCCcCcEEeeeEEEECC--eEEE-------EECCCcChHHHHHHH
Confidence 46778888877655444444444434455666555444333 333332 2221 013344557777777
Q ss_pred HHHHhcCHHHHHHH
Q 007873 548 RALATYGTQALAEM 561 (586)
Q Consensus 548 ~ll~~~~~~~~~~~ 561 (586)
+-+++.-++.+.++
T Consensus 138 ~~ie~~l~~~~~~~ 151 (157)
T PRK06719 138 QELTSILPKLIKKI 151 (157)
T ss_pred HHHHHHhhHHHHHH
Confidence 77776334444443
No 283
>PRK00587 hypothetical protein; Provisional
Probab=34.61 E-value=1.1e+02 Score=25.84 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=37.0
Q ss_pred cEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-+-.+. ||++.+.-.|..-+. +..+|.+.++|.|++-|.+-|..++++
T Consensus 28 ~v~g~~-gGlVkV~~nG~~~i~--~i~Idp~lld~eD~E~LeDLI~aA~Nd 75 (99)
T PRK00587 28 EFDFDY-KKYILIKIKGNLNIE--KIEINKELIDPEDKETLQDMLREAINE 75 (99)
T ss_pred EEEEEc-CCeEEEEEEcCccEE--EEEECHHHcCCccHHHHHHHHHHHHHH
Confidence 344555 898888887644333 567788889999999999999999886
No 284
>PRK07236 hypothetical protein; Provisional
Probab=34.28 E-value=40 Score=35.69 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=27.9
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|+.++|++|+.- .+|+. +|.+|++.|++|+|+=.
T Consensus 4 ~~~~~ViIVGaG------~aGl~-----~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGS------LGGLF-----AALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEECCC------HHHHH-----HHHHHHhCCCCEEEEec
Confidence 677899999864 35665 89999999999999954
No 285
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=34.01 E-value=53 Score=33.79 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=25.4
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++++. |++|.+ ++-.|++.||+|+++...
T Consensus 2 ~m~I~IiGa--------GaiG~~---~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGA--------GSLGSL---WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECC--------CHHHHH---HHHHHHhCCCCeEEEEec
Confidence 689999984 666655 445567889999999875
No 286
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=33.89 E-value=48 Score=32.20 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=23.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||.||+ |.|.+-..|+..|++.||+|+++...
T Consensus 1 MkI~IIG----------G~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLG----------GTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEc----------CCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6777764 22334445889999999999987544
No 287
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=33.64 E-value=47 Score=33.23 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=21.9
Q ss_pred cchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||+|. ...+||.+|+++|++|.++=.
T Consensus 10 KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 366654 678899999999999999943
No 288
>PRK00211 sulfur relay protein TusC; Validated
Probab=33.59 E-value=69 Score=28.05 Aligned_cols=40 Identities=20% Similarity=-0.007 Sum_probs=28.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+||... +|+ ..-.+.-..+++-++++.+++|.++-..
T Consensus 2 ~ki~~i~~~-~Py--g~~~~~eaLd~ala~~a~~~~v~vff~~ 41 (119)
T PRK00211 2 KRIAFVFRQ-APH--GTASGREGLDALLATSAFTEDIGVFFID 41 (119)
T ss_pred ceEEEEecC-CCC--CCHHHHHHHHHHHHHhcccCCeeEEEEh
Confidence 469999887 686 2224444555688888899999988765
No 289
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=33.47 E-value=6.7e+02 Score=27.58 Aligned_cols=107 Identities=24% Similarity=0.286 Sum_probs=70.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc--cEEEEcCCC-CCCcHHHHHHHHc---CCcEEEc
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA--DFILIPSRF-EPCGLIQLHAMRY---GTVPIVA 506 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a--Di~l~PS~~-E~~gl~~lEAma~---G~PvI~s 506 (586)
.++|+-+.. .....+++.-...+..+ ...-+..++...+... |+++.=.+. +.-|+.+++.+.. ++|||.-
T Consensus 6 ~iLvVDDd~-~ir~~l~~~L~~~G~~v--~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 6 RILVVDDDP-DIRELLEQALELAGYEV--VTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CEEEEeCCH-HHHHHHHHHHHHcCCeE--EEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 355666544 35555555555554333 2333556666666555 555554443 6678888887766 7999765
Q ss_pred C-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
. .|. .++-++.|..-|+. .|-|++.|...+.++++.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~----------KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLE----------KPFDLDRLLAIVERALEL 122 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeee----------CCCCHHHHHHHHHHHHHH
Confidence 4 444 44455668888887 999999999999999986
No 290
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=33.17 E-value=57 Score=30.90 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=21.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||.+++..| =|+. +|..|++.||+|..+=..
T Consensus 1 M~I~ViGlGy------vGl~-----~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGY------VGLP-----LAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--ST------THHH-----HHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECCCc------chHH-----HHHHHHhCCCEEEEEeCC
Confidence 8999998754 2333 899999999999998443
No 291
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.71 E-value=38 Score=32.90 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=31.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
|.+++++. +| ..|-.++..+|+++|.+++|+|..++..|
T Consensus 1 mpLiIlTG--yP---gsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 1 MPLIILTG--YP---GSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred CceEEEec--CC---CCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 55666665 36 46888899999999999999999998653
No 292
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=32.63 E-value=34 Score=34.62 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=26.2
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
+||.|-+=..|...|.+.||+|++++.+..
T Consensus 4 TGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 4 TGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred eccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 688887777899999999999999998743
No 293
>PRK09004 FMN-binding protein MioC; Provisional
Probab=32.54 E-value=68 Score=29.10 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.4
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
+|-.+.+...|++.+.++|++|.++.
T Consensus 12 tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 12 LGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred chHHHHHHHHHHHHHHHcCCceEEec
Confidence 78889999999999999999999864
No 294
>PRK08105 flavodoxin; Provisional
Probab=32.53 E-value=68 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=24.3
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+|-.+.+...|+..|.++|++|.++..
T Consensus 12 tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 12 YGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred chHHHHHHHHHHHHHHhCCCceEEech
Confidence 788999999999999999999998764
No 295
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=32.48 E-value=54 Score=35.11 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=28.4
Q ss_pred CCceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEE
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt 125 (586)
++++|+-|... .||+|. ...+||.+|+.+|++|.+|=
T Consensus 104 ~~~~vIav~n~------KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSH------KGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecC------CCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45777666643 577665 67889999999999999984
No 296
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.46 E-value=4e+02 Score=24.76 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHHHhhccc--CCeEEEEEeCCChhh-HHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCC
Q 007873 420 LAAAIPHFIK--ENVQIIVLGTGKKPM-EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF 486 (586)
Q Consensus 420 Ll~A~~~l~~--~~v~lvIvG~g~~~~-~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~ 486 (586)
.++.++++.. .+-+++|+|.|. + ...+.....+.+.++... ....+++.+.+..||+++...-.
T Consensus 31 ~v~l~~~~~~~l~gk~vlViG~G~--~~G~~~a~~L~~~g~~V~v~-~r~~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 31 ILELLKRYGIDLAGKKVVVVGRSN--IVGKPLAALLLNRNATVTVC-HSKTKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcH--HHHHHHHHHHhhCCCEEEEE-ECCchhHHHHHhhCCEEEEcCCC
Confidence 3444444432 577899999986 2 221333333333334333 33445667899999999987764
No 297
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=32.37 E-value=46 Score=33.47 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=22.2
Q ss_pred cchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||+|. ..-+|+-+|+++|++|.++=.
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVllvD~ 37 (273)
T PRK13232 9 KGGIGKSTTTQNLTAALSTMGNKILLVGC 37 (273)
T ss_pred CCCCcHHHHHHHHHHHHHhhCCCeEEEec
Confidence 466665 678899999999999999943
No 298
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=32.07 E-value=66 Score=28.73 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vv 124 (586)
|||+++-.. .+|.+...+..++..|.+.|++|.++
T Consensus 1 M~i~IiY~S-----~tGnTe~iA~~ia~~l~~~g~~v~~~ 35 (140)
T TIGR01754 1 MRILLAYLS-----LSGNTEEVAFMIQDYLQKDGHEVDIL 35 (140)
T ss_pred CeEEEEEEC-----CCChHHHHHHHHHHHHhhCCeeEEec
Confidence 777776532 37889999999999999999998743
No 299
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=31.95 E-value=1.3e+02 Score=26.52 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.1
Q ss_pred ChHHHHHHHHhccEEEEc
Q 007873 466 NIPLAHMIIAGADFILIP 483 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~P 483 (586)
..+...+++..||++|+-
T Consensus 67 ~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 67 GSPAANEALEQADLVLAI 84 (137)
T ss_dssp SCHHHHHHHHHSSEEEEE
T ss_pred CCHHHHHHhcCCCEEEEE
Confidence 356677899999999864
No 300
>PLN02928 oxidoreductase family protein
Probab=31.94 E-value=1e+02 Score=32.43 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHHHHHhccEEEEc--CCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 469 LAHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 469 ~~~~~l~~aDi~l~P--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
.+.++++.||++++- ...|+ ++-..+..|--|.-+|-+..|++.|
T Consensus 219 ~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVd 268 (347)
T PLN02928 219 DIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLD 268 (347)
T ss_pred CHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccC
Confidence 466899999998763 34444 5556888888898888888888665
No 301
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=31.75 E-value=58 Score=29.58 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=29.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
|||+++-.. .+|.+..++..++..|.+.|++|.+..
T Consensus 2 ~ki~Ivy~S-----~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 2 MKILIVYGS-----RTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CeEEEEEEc-----CCCcHHHHHHHHHHHhccCCceEEEee
Confidence 678877654 379999999999999999999995554
No 302
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=31.64 E-value=52 Score=33.08 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=22.4
Q ss_pred cchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||+|. ..-+|+.+|+++|++|.++=.
T Consensus 9 KGGVGKTT~~~nLA~~La~~G~rVLlID~ 37 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMGKKVMVVGC 37 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEec
Confidence 477765 578899999999999999943
No 303
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=31.53 E-value=61 Score=28.55 Aligned_cols=36 Identities=19% Similarity=0.035 Sum_probs=24.6
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++...- ++......++.+.|.+.|++|.++...
T Consensus 1 k~i~l~vtG-------s~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG-------SIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S-------SGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC-------HHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 677777642 122223778999999999999988764
No 304
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=31.43 E-value=3e+02 Score=29.35 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=46.0
Q ss_pred cccCHHHHHHHHhhccc-CCeEEEEEeCCChhh-HHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCC-CC
Q 007873 413 EQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPM-EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFE-PC 489 (586)
Q Consensus 413 ~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~-~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E-~~ 489 (586)
..|..+.+.+++++..+ -++-|+|.|+|.+.. .+.++...+.+++ -..+|.+-..| +|
T Consensus 169 ~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G-------------------~kpLL~SAt~e~Ny 229 (389)
T TIGR00381 169 DDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEG-------------------ERCLLASANLDLDY 229 (389)
T ss_pred cccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCC-------------------CCcEEEecCchhhH
Confidence 35788889999988855 689999999976322 2333333333322 12233333334 44
Q ss_pred cHHHHHHHHcCCcEEEcC
Q 007873 490 GLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 490 gl~~lEAma~G~PvI~s~ 507 (586)
--..-=|+.+|+||++..
T Consensus 230 ~~ia~lAk~yg~~Vvv~s 247 (389)
T TIGR00381 230 EKIANAAKKYGHVVLSWT 247 (389)
T ss_pred HHHHHHHHHhCCeEEEEc
Confidence 444444688888888876
No 305
>PRK13236 nitrogenase reductase; Reviewed
Probab=31.26 E-value=59 Score=33.31 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCCceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
...||++-+.. .||+|. ..-+||.+|+++|++|.++=..
T Consensus 3 ~~~~~~~~~~G-------KGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 3 DENIRQIAFYG-------KGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CcCceEEEEEC-------CCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 34677666632 577765 5688999999999999999543
No 306
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=31.13 E-value=3.8e+02 Score=29.16 Aligned_cols=129 Identities=11% Similarity=-0.033 Sum_probs=67.0
Q ss_pred cEEEEEecCc-----cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHC----CCceEEEeccChHHHHHH
Q 007873 403 PVIGFIGRLE-----EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY----PEKARGVAKFNIPLAHMI 473 (586)
Q Consensus 403 ~~i~~iGrl~-----~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~----~~~v~~~~~~~~~~~~~~ 473 (586)
.+++..|... +.+-...++.++..+ +++.|+..=.+..... +.+.. ++++....+.++.++.
T Consensus 279 vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~--~~~~FiW~~~~~~~~~-----~~~~~~~~~~~nV~~~~W~PQ~~ll-- 349 (496)
T KOG1192|consen 279 VVYISFGSMVNSADLPEEQKKELAKALESL--QGVTFLWKYRPDDSIY-----FPEGLPNRGRGNVVLSKWAPQNDLL-- 349 (496)
T ss_pred eEEEECCcccccccCCHHHHHHHHHHHHhC--CCceEEEEecCCcchh-----hhhcCCCCCcCceEEecCCCcHHHh--
Confidence 4555567664 456667788888887 5676665444331111 22222 2356655555555432
Q ss_pred HHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCC----cCcccccc-cCcceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 474 IAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVAST----GGLVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 474 l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~----gg~~e~v~-~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
++..-+-++= -.|| ++++|++.+|+|+|+... .-....+. ++..+... ..+..+.+ +.+++.
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~--------~~~~~~~~-~~~~~~ 417 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLD--------KRDLVSEE-LLEAIK 417 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEe--------hhhcCcHH-HHHHHH
Confidence 2221111111 2344 345999999999996542 22344444 44444442 12233333 677777
Q ss_pred HHHHh
Q 007873 548 RALAT 552 (586)
Q Consensus 548 ~ll~~ 552 (586)
.++.+
T Consensus 418 ~il~~ 422 (496)
T KOG1192|consen 418 EILEN 422 (496)
T ss_pred HHHcC
Confidence 77765
No 307
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=30.95 E-value=1.9e+02 Score=30.80 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--------ChHHHHHHHHhccEEE--EcCCCC----C---CcHH
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--------NIPLAHMIIAGADFIL--IPSRFE----P---CGLI 492 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--------~~~~~~~~l~~aDi~l--~PS~~E----~---~gl~ 492 (586)
.+-.+-|+|-|. .-..+.+....++.++...-.. ....+.++++.||+++ +|...+ + ++-.
T Consensus 115 ~gktvGIIG~G~--IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~ 192 (378)
T PRK15438 115 HDRTVGIVGVGN--VGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEK 192 (378)
T ss_pred CCCEEEEECcCH--HHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHH
Confidence 356778888887 4555555555666545433211 0113567999999998 565543 4 4456
Q ss_pred HHHHHHcCCcEEEcCCcCccc
Q 007873 493 QLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 493 ~lEAma~G~PvI~s~~gg~~e 513 (586)
.++.|.-|.-+|-+..|++.|
T Consensus 193 ~l~~mk~gailIN~aRG~vVD 213 (378)
T PRK15438 193 LIRSLKPGAILINACRGAVVD 213 (378)
T ss_pred HHhcCCCCcEEEECCCchhcC
Confidence 889999999999999998766
No 308
>PRK14622 hypothetical protein; Provisional
Probab=30.86 E-value=1.4e+02 Score=25.49 Aligned_cols=50 Identities=32% Similarity=0.377 Sum_probs=38.9
Q ss_pred CcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-|-.+..||++.+.-.|..-++ +..+|.+.++|.|++.|.+.|..++++
T Consensus 27 ~~v~g~sggG~VkV~~nG~~~v~--~i~Idp~~l~~ed~e~LeDLI~aA~N~ 76 (103)
T PRK14622 27 IAVEAESGGGLVKVAMNGKCEVT--RLTVDPKAVDPNDKAMLEDLVTAAVNA 76 (103)
T ss_pred cEEEEEECCceEEEEEEcCceEE--EEEECHHHcCcccHHHHHHHHHHHHHH
Confidence 34566677888888887654443 567788889999999999999999876
No 309
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=30.84 E-value=76 Score=29.45 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=32.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
|+|+-|..+ +..|=.+.+..|.+.|.++|++|-++-....
T Consensus 2 ~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 677776643 4678888999999999999999999976543
No 310
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=30.78 E-value=57 Score=32.93 Aligned_cols=27 Identities=30% Similarity=0.656 Sum_probs=22.2
Q ss_pred cchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||+|. ...+||.+|+++|++|.+|=.
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLliD~ 37 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALAESGKKVLVVGC 37 (279)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEEee
Confidence 467665 668899999999999999943
No 311
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.73 E-value=71 Score=30.76 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=23.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+.|+|++.+. .||+| ..+++.|.++||+|.++...
T Consensus 4 ~~~~ilItGa-------sg~iG---~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 4 QGKTALVTGA-------SRGIG---RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 3456666553 35555 45788888999998777654
No 312
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.56 E-value=1.9e+02 Score=24.39 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=45.4
Q ss_pred EEEEeCCC--hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCC-CCcHHHHHHHHcCCcEEEcC
Q 007873 434 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFE-PCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 434 lvIvG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E-~~gl~~lEAma~G~PvI~s~ 507 (586)
++++|.|. .-..+.+++.+++.+..+. .......+.......+|+++.....- -+.-..-.+-..|+||.+.+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~-i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLE-AAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 46777775 3456777888877764443 33556666777889999988765421 12222223445688987766
No 313
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=30.23 E-value=63 Score=32.75 Aligned_cols=32 Identities=41% Similarity=0.700 Sum_probs=24.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++. |.+| ..++..|++.||+|+++...
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 78888874 3433 33777888899999999864
No 314
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=30.23 E-value=78 Score=27.40 Aligned_cols=39 Identities=18% Similarity=0.016 Sum_probs=28.4
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||+||-.. +|+ ..-.+.-..+++-++++.+++|.++-..
T Consensus 1 kil~i~~~-~Py--g~~~~~e~l~~al~~aa~~~eV~vff~~ 39 (116)
T TIGR03010 1 KLAFVFRQ-APH--GTASGREGLDALLAASAFDEDIGVFFID 39 (116)
T ss_pred CEEEEEcC-CCC--CcchHHHHHHHHHHHHhccCCeEEEEec
Confidence 58888876 686 2224445566788889999999998765
No 315
>PRK12827 short chain dehydrogenase; Provisional
Probab=29.95 E-value=74 Score=30.79 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=25.1
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+.|+|++++. .||+| ..+++.|+++||+|.++..
T Consensus 5 ~~~~ilItGa-------sg~iG---~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGG-------SGGLG---RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCCEEEEECC-------CChHH---HHHHHHHHHCCCeEEEEcC
Confidence 4577776664 36666 4688999999999988754
No 316
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=29.84 E-value=63 Score=30.36 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=29.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|||+++-.+ .+|-+..+...+++.|.. ||+|.++-.
T Consensus 1 MkilIvY~S-----~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYSS-----RDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEEC-----CCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 788777543 478899899999999988 999988743
No 317
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=29.84 E-value=3.4e+02 Score=23.64 Aligned_cols=95 Identities=18% Similarity=0.088 Sum_probs=61.9
Q ss_pred ceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEccccccccCCC
Q 007873 458 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVD 535 (586)
Q Consensus 458 ~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~~~~~~~~~v~ 535 (586)
.+......+.++..+.+..+|+++..+.. .+.-.+++++ -++-.|++...|...+--+ ...|+.+ --+.
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~gI~V-------~n~~ 90 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKERGIPV-------TNVP 90 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHTTSEE-------EE-T
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhCeEEE-------EEeC
Confidence 46666666788888999999999985553 5888899888 8888999988887543221 2344444 1124
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007873 536 PVDVAAVSTTVRRALATYGTQALAEMMKNGM 566 (586)
Q Consensus 536 ~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 566 (586)
....++.|+.. -+..+.+.+|.+.++
T Consensus 91 g~~~~aVAE~a-----~~T~e~~~~~~~~~~ 116 (133)
T PF00389_consen 91 GYNAEAVAEHA-----GYTDEARERMAEIAA 116 (133)
T ss_dssp TTTHHHHHHHH-----TGBHHHHHHHHHHHH
T ss_pred CcCCcchhccc-----hhHHHHHHHHHHHHH
Confidence 45677777776 222555666655543
No 318
>PRK05246 glutathione synthetase; Provisional
Probab=29.52 E-value=49 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=30.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+|+-. |.....--.+....|+++..++||+|.+++|.
T Consensus 2 ~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~ 41 (316)
T PRK05246 2 MKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPD 41 (316)
T ss_pred ceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehh
Confidence 89999985 32223333345567999999999999999987
No 319
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=29.42 E-value=62 Score=32.36 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=23.1
Q ss_pred EEEEeccccCccccchHH--HHhhhhHHHHHhCCCeEEEEEec
Q 007873 87 ILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 87 Il~v~~~~~P~~~~GG~~--~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|+++ .||+| ++..+||-+|+++|++|-++=..
T Consensus 2 iIvV~sg------KGGvGKSTva~~lA~aLa~~G~kVg~lD~D 38 (261)
T PF09140_consen 2 IIVVGSG------KGGVGKSTVAVNLAVALARMGKKVGLLDLD 38 (261)
T ss_dssp EEEEE-S------STTTTHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred EEEEecC------CCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4555554 56665 47788999999999999999543
No 320
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.38 E-value=39 Score=33.16 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.6
Q ss_pred hHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 102 GLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 102 G~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|.|++-..+|+.|.++||+|.++-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 45666777999999999999999654
No 321
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=29.35 E-value=2.6e+02 Score=28.14 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=69.7
Q ss_pred cEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChh---------hHHHHHHHHHHCCCceEEEeccChHHHH
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKP---------MEKQLEQLEILYPEKARGVAKFNIPLAH 471 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~---------~~~~l~~l~~~~~~~v~~~~~~~~~~~~ 471 (586)
-.-+++|.-.+.+-+..+.++.....+ -++-+.+..-|+.- ...+..+++.++
T Consensus 115 ~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaael---------------- 178 (265)
T COG1830 115 GATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAEL---------------- 178 (265)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHh----------------
Confidence 356788988887777777777776654 24444455555421 112222233333
Q ss_pred HHHHhccEEEEcCCC--CCCcHHHHHHHHcCCcEEEcCCcCc---c-------cccccCcceEEEccccccccCCCCCCH
Q 007873 472 MIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGL---V-------DTVEEGFTGFQMGSFSVDCEAVDPVDV 539 (586)
Q Consensus 472 ~~l~~aDi~l~PS~~--E~~gl~~lEAma~G~PvI~s~~gg~---~-------e~v~~g~~G~~~~~~~~~~~~v~~~d~ 539 (586)
+||++=....- |.|--++ -+||+|||++--+-. . +.+..|..|..+|+= ...-.+|
T Consensus 179 ----GADIiK~~ytg~~e~F~~vv---~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRN-----ifQ~~~p 246 (265)
T COG1830 179 ----GADIIKTKYTGDPESFRRVV---AACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRN-----IFQHEDP 246 (265)
T ss_pred ----cCCeEeecCCCChHHHHHHH---HhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhh-----hhccCCh
Confidence 45555333322 3333332 367899998853222 1 244557788777632 1156788
Q ss_pred HHHHHHHHHHHHh
Q 007873 540 AAVSTTVRRALAT 552 (586)
Q Consensus 540 ~~la~~I~~ll~~ 552 (586)
+.++++|..+.-+
T Consensus 247 ~~m~~Ai~~Ivhe 259 (265)
T COG1830 247 EAMVKAIQAIVHE 259 (265)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999888754
No 322
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.27 E-value=62 Score=32.89 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=23.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|||++++. |++| ..++..|++.||+|.+++.
T Consensus 1 mkI~IiG~--------G~iG---~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVG---GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHH---HHHHHHHHHCCCceEEEec
Confidence 78888874 3433 2367778889999999986
No 323
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.94 E-value=2.7e+02 Score=23.92 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=38.2
Q ss_pred CCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 GTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-+-+-.+.-||++.++-.|..-+. +..+|.+.++|.|.+.|.+-|..++++
T Consensus 30 ~~ev~g~aggGlVtV~~~G~~ev~--~v~Idp~l~dpeD~E~LeDLi~aA~nd 80 (105)
T COG0718 30 QKEVTGKAGGGLVTVTINGKGEVK--SVEIDPSLLDPEDKEMLEDLILAAFND 80 (105)
T ss_pred hcEEeeecCCcEEEEEEeCCCcEE--EEEeCHHHcCcccHHHHHHHHHHHHHH
Confidence 344556667778888877643332 456788889999999999999999886
No 324
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.87 E-value=61 Score=34.98 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=26.0
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|||.+|+.-+ . |. .++..|++.||+|.++-..
T Consensus 1 m~~~kI~VIGlG~-----~-G~-----~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGY-----I-GL-----PTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcch-----h-hH-----HHHHHHHhCCCEEEEEeCC
Confidence 4458999998642 2 22 2899999999999988654
No 325
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=28.72 E-value=92 Score=28.86 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=28.3
Q ss_pred HHHhccEEEEcCC--C--CCCc--HHHHHHHHcCCcEEEcCCcCcc
Q 007873 473 IIAGADFILIPSR--F--EPCG--LIQLHAMRYGTVPIVASTGGLV 512 (586)
Q Consensus 473 ~l~~aDi~l~PS~--~--E~~g--l~~lEAma~G~PvI~s~~gg~~ 512 (586)
+-..+|++|+.-+ . |+-| -.+.+|++.|+||++.-.....
T Consensus 90 l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l 135 (159)
T PF10649_consen 90 LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL 135 (159)
T ss_pred HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH
Confidence 4456899988754 2 4444 4589999999999988644433
No 326
>PRK06753 hypothetical protein; Provisional
Probab=28.66 E-value=53 Score=34.44 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=24.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|+|++|+.- | +|+. +|..|+++||+|+|+=.
T Consensus 1 ~~V~IvGgG--~----aGl~-----~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 1 MKIAIIGAG--I----GGLT-----AAALLQEQGHEVKVFEK 31 (373)
T ss_pred CEEEEECCC--H----HHHH-----HHHHHHhCCCcEEEEec
Confidence 789998863 2 5655 78889999999999843
No 327
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=28.66 E-value=66 Score=29.60 Aligned_cols=37 Identities=41% Similarity=0.505 Sum_probs=30.2
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
+++||++|+. +-++++..++..+++.|.+|.+++|..
T Consensus 1 ~gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TTEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 3688999984 224578889999999999999999974
No 328
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=28.36 E-value=1.8e+02 Score=30.19 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=34.2
Q ss_pred HHHHHHhccEEEE--cCCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~--PS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++ |..-|+ ++-..++.|--|.-+|-+..|++.|
T Consensus 194 l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 242 (323)
T PRK15409 194 LDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVD 242 (323)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccC
Confidence 4569999999865 444444 5666999999999999999988765
No 329
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=28.34 E-value=1.1e+02 Score=26.69 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=30.5
Q ss_pred ceEEEEeccccCccccchHHHHh--hhhHHHHHhCCCeEEEEEecC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~--~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
|||+.|+.. | +|-.-.++ ..|.++-.++||++.|=+...
T Consensus 3 mkivaVtac--p---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 3 AYLVAVTAC--V---SGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred ceEEEEeeC--C---CcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 899999873 6 57666666 558888889999999887653
No 330
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=28.23 E-value=92 Score=32.79 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=39.2
Q ss_pred HHHHHHHcCCcEEEcC--CcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 492 IQLHAMRYGTVPIVAS--TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 492 ~~lEAma~G~PvI~s~--~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
++.+|+.+|+.+|.-. ..-..+++.. ..-+.+ -+-.++++||+.|..+.+| ++++.
T Consensus 246 K~~~al~~g~VPI~~G~~~~~~~~~~P~-~SfI~~---------~df~s~~~La~yl~~l~~n--~~~Y~ 303 (349)
T PF00852_consen 246 KFWNALLAGTVPIYWGPPRPNYEEFAPP-NSFIHV---------DDFKSPKELADYLKYLDKN--DELYN 303 (349)
T ss_dssp HHHHHHHTTSEEEEES---TTHHHHS-G-GGSEEG---------GGSSSHHHHHHHHHHHHT---HHHHH
T ss_pred HHHHHHHCCeEEEEECCEecccccCCCC-CCccch---------hcCCCHHHHHHHHHHHhcC--HHHHh
Confidence 5789999999999887 5566666655 333333 1446899999999999988 66554
No 331
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=28.16 E-value=1.7e+02 Score=30.57 Aligned_cols=44 Identities=30% Similarity=0.452 Sum_probs=35.2
Q ss_pred HHHHHHhccEEEE--cCCCCCC---cHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILI--PSRFEPC---GLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~--PS~~E~~---gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++ |...|+. +-..++.|--|.-.|-+..|++.|
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 5679999999864 6666664 555888999999999999998776
No 332
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=28.15 E-value=4.8e+02 Score=26.82 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=63.5
Q ss_pred ecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCe
Q 007873 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENV 432 (586)
Q Consensus 353 I~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v 432 (586)
|.|+.|-...+|... ..+--.+++.+|-- +...|.|+|-+.+..=..-++.++..+ .+
T Consensus 120 VINa~~g~~~HPtQ~----------------LaDl~Ti~e~~g~l---~g~~va~vGD~~~~~v~~Sl~~~~a~~---g~ 177 (301)
T TIGR00670 120 VINAGDGSNQHPTQT----------------LLDLYTIYEEFGRL---DGLKIALVGDLKYGRTVHSLAEALTRF---GV 177 (301)
T ss_pred EEeCCCCCCCCcHHH----------------HHHHHHHHHHhCCC---CCCEEEEEccCCCCcHHHHHHHHHHHc---CC
Confidence 457777566777531 12334456666632 347899999765555577788888887 68
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCC
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~ 485 (586)
++.+++...-...+.+.+.+.+.+.++.. + ....+.+.+||++...+.
T Consensus 178 ~v~~~~P~~~~~~~~~~~~~~~~G~~v~~---~--~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 178 EVYLISPEELRMPKEILEELKAKGIKVRE---T--ESLEEVIDEADVLYVTRI 225 (301)
T ss_pred EEEEECCccccCCHHHHHHHHHcCCEEEE---E--CCHHHHhCCCCEEEECCc
Confidence 88888864311122332333344433331 1 234468899999887654
No 333
>PRK14625 hypothetical protein; Provisional
Probab=27.72 E-value=1.7e+02 Score=25.30 Aligned_cols=50 Identities=22% Similarity=0.186 Sum_probs=38.7
Q ss_pred CcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-|-.+..||++.++-.|..-+. +..+|.+.++|+|++-|.+-|..++++
T Consensus 28 ~~v~g~sggG~VkV~~~G~~~v~--~I~Idp~ll~~eD~e~LeDLI~aA~Nd 77 (109)
T PRK14625 28 TTVEGTSGGGMVTVTLMGNGELV--RVLMDESLVQPGEGEVIADLIVAAHAD 77 (109)
T ss_pred cEEEEEECCCeEEEEEecCceEE--EEEECHHHcCCccHHHHHHHHHHHHHH
Confidence 44566777888888887644333 566788889999999999999988876
No 334
>PRK14626 hypothetical protein; Provisional
Probab=27.49 E-value=1.6e+02 Score=25.48 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 GTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+-+-.+..||++.++-+|..-+. +..+|.+.++|.|++.|.+-|..++++
T Consensus 30 ~~~v~g~sggG~VkV~~nG~~ev~--~i~Id~~ll~~ed~e~LeDLI~aA~N~ 80 (110)
T PRK14626 30 KEEIVVEVGGGMVKVVSNGLGEIK--DVEIDKSLLNEDEYEVLKDLLIAAFNE 80 (110)
T ss_pred ccEEEEEecCcEEEEEEECCccEE--EEEECHHHcCcccHHHHHHHHHHHHHH
Confidence 444667777888888877644333 456677888999999999999998876
No 335
>PLN02306 hydroxypyruvate reductase
Probab=27.43 E-value=1.6e+02 Score=31.56 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHhccEEEE--cCCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 469 LAHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 469 ~~~~~l~~aDi~l~--PS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
.+.++++.||++++ |...|+ ++-..++.|--|.-+|-+..|++.|
T Consensus 229 ~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD 278 (386)
T PLN02306 229 SMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID 278 (386)
T ss_pred CHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 46789999999876 444455 4455888999999999999998776
No 336
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.30 E-value=53 Score=30.33 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.0
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
.||.|..-..++++|.++||+|.+++.+.
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 46666666779999999999999999773
No 337
>PLN02778 3,5-epimerase/4-reductase
Probab=27.19 E-value=63 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEE
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vv 124 (586)
.+|||++.+. .|-.=..|++.|.++||+|.+.
T Consensus 8 ~~~kiLVtG~----------tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 8 ATLKFLIYGK----------TGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCeEEEECC----------CCHHHHHHHHHHHhCCCEEEEe
Confidence 4689887653 3333455889999999999754
No 338
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.16 E-value=1.9e+02 Score=24.07 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=44.2
Q ss_pred EEEEeCCC--hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHH--HHcCCcEEEcCC
Q 007873 434 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHA--MRYGTVPIVAST 508 (586)
Q Consensus 434 lvIvG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEA--ma~G~PvI~s~~ 508 (586)
++++|.|- .-+.+.+++...+.+-.+. ....+..+.......+|++++..... +-..-++. -.+|+||..-+.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~-v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVK-IAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEE-EEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeCh
Confidence 56788875 2355667777777664332 33344455556778899998876532 23333443 345789988764
No 339
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.10 E-value=8.4e+02 Score=26.54 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=91.5
Q ss_pred EEecCccccCHHHHHHHHhhcccCCeEEEEEeCC-----ChhhHHHHHHHHHHCC-CceEEEecc-ChHH----HHHHHH
Q 007873 407 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG-----KKPMEKQLEQLEILYP-EKARGVAKF-NIPL----AHMIIA 475 (586)
Q Consensus 407 ~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g-----~~~~~~~l~~l~~~~~-~~v~~~~~~-~~~~----~~~~l~ 475 (586)
|++.-...+=+++.-+|++.++.....++|+-+. ++.+.+++.++..... +.+.+++-- .+++ +..+-.
T Consensus 158 ~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 158 FFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 4444334455667788888887776777777762 2455666666665443 444444322 2332 222333
Q ss_pred hccE--EEEcCCC-CCCcHHHHHH-HHcCCcEEEcCCcCcccccc----cCcceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 476 GADF--ILIPSRF-EPCGLIQLHA-MRYGTVPIVASTGGLVDTVE----EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 476 ~aDi--~l~PS~~-E~~gl~~lEA-ma~G~PvI~s~~gg~~e~v~----~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
..++ +|++-.. ..=|-..|-+ -..|+|+--..+|-=.+-++ +...+-+ +--+|+.+|.+.++
T Consensus 238 ~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRI----------LGMGDv~sLvEk~~ 307 (451)
T COG0541 238 ALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRI----------LGMGDVLSLIEKAE 307 (451)
T ss_pred hcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHh----------cCcccHHHHHHHHH
Confidence 3343 3333221 3344444433 45799986665553222111 1111111 13467777777777
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 548 RALATYGTQALAEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 548 ~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
+.++ .+..+++.++-+.-+|+.+.+.+++.+..
T Consensus 308 ~~~d---~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 308 EVVD---EEEAEKLAEKLKKGKFTLEDFLEQLEQMK 340 (451)
T ss_pred Hhhh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7765 35566666666777899999999998754
No 340
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=26.84 E-value=93 Score=31.66 Aligned_cols=44 Identities=11% Similarity=-0.052 Sum_probs=30.7
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|.+|||+++.....|. ..-.-.....+.++|.+.||+|.++-..
T Consensus 2 ~~~~~v~~~~g~~~~~--~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAE--REVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCC--ceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 3456999998654453 2111224578999999999999999654
No 341
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=26.83 E-value=66 Score=34.98 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=25.4
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+.|||++.+ |.|-+-..|++.|.++||+|.++..
T Consensus 119 ~~mkILVTG----------atGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTG----------GAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCEEEEEC----------CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 468977654 4454556699999999999998864
No 342
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=26.82 E-value=1.8e+02 Score=29.25 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=28.6
Q ss_pred HhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC
Q 007873 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 475 ~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg 510 (586)
..+|+++.-|..+.---.+..|+.+|+|+|+..+|-
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 468999887766666667888999999999876654
No 343
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.75 E-value=5.5e+02 Score=25.00 Aligned_cols=127 Identities=18% Similarity=0.120 Sum_probs=65.6
Q ss_pred cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCc--eEEEeccChHHHHHHHHhccEEEEcCCCCCCcH-
Q 007873 415 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEK--ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGL- 491 (586)
Q Consensus 415 KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~--v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl- 491 (586)
++.+..++.+.+....-+.+.+=- .....+.++.+ .+.+.+ +.....-+.+.+..++...|.+++=+..-+||.
T Consensus 68 ~~p~~~i~~~~~~gad~i~~H~Ea--~~~~~~~l~~i-k~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 68 KPVDRIIPDFAKAGASMITFHVEA--SEHVDRTLQLI-KEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ 144 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccC--cccHHHHHHHH-HHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc
Confidence 357777777776522212222211 11122333332 233322 222333345667779999999888776544443
Q ss_pred --------HHHHHHHc------CCcEEEcCCcCcc-----cccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 492 --------IQLHAMRY------GTVPIVASTGGLV-----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 492 --------~~lEAma~------G~PvI~s~~gg~~-----e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
.+-+.-.. .+|+.+ .||+. ++++.|.+++++|+... ...|+.+.++.+++.+.
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~v--dGGI~~eni~~l~~aGAd~vVvGSaIf-----~~~d~~~~i~~l~~~~~ 216 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEI--DGGVKVDNIREIAEAGADMFVAGSAIF-----GQPDYKAVIDEMRAELA 216 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEE--ECCCCHHHHHHHHHcCCCEEEEeHHHh-----CCCCHHHHHHHHHHHHH
Confidence 12221111 255544 45543 45667899999985432 34567777766666543
No 344
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.74 E-value=3.4e+02 Score=21.91 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=33.6
Q ss_pred cCHHHHHHHHhhcccCCeEEEEEeC-CChhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 415 KGSDILAAAIPHFIKENVQIIVLGT-GKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 415 KG~d~Ll~A~~~l~~~~v~lvIvG~-g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
-|.+..++++.. ...+++|+.. -++...+.+..++..++-.+ ...++..++
T Consensus 14 ~G~~~v~kai~~---gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~--~~~~s~~eL 65 (82)
T PRK13602 14 IGTKQTVKALKR---GSVKEVVVAEDADPRLTEKVEALANEKGVPV--SKVDSMKKL 65 (82)
T ss_pred EcHHHHHHHHHc---CCeeEEEEECCCCHHHHHHHHHHHHHcCCCE--EEECCHHHH
Confidence 477888888765 4778876665 44667888888888776333 333355554
No 345
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=26.67 E-value=75 Score=31.25 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=21.6
Q ss_pred cchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||+|. ...+||.+|++.|++|.++=.
T Consensus 10 kGGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 10 KGGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 355554 788899999999999999843
No 346
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=26.57 E-value=5.7e+02 Score=24.42 Aligned_cols=44 Identities=9% Similarity=-0.059 Sum_probs=29.5
Q ss_pred HHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccc
Q 007873 472 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515 (586)
Q Consensus 472 ~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v 515 (586)
..+..+|+++...-.+.....+.+....+.+|-+.|.+..-+++
T Consensus 66 ~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~ 109 (202)
T PRK06718 66 SDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNVV 109 (202)
T ss_pred hhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeEE
Confidence 35778898887766554455555555778898888766555544
No 347
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=26.47 E-value=2.4e+02 Score=26.21 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=42.1
Q ss_pred cCHHHHHHHHhhcccC--CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 415 KGSDILAAAIPHFIKE--NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 415 KG~d~Ll~A~~~l~~~--~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
=.+.+.++|+..+..+ |.-+++-|+++ +...++.+.+. +-.+...+ ........+.+.||-|+.
T Consensus 89 ~Dv~laIDame~~~~~~iD~~vLvSgD~D--F~~Lv~~lre~-G~~V~v~g-~~~~ts~~L~~acd~FI~ 154 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPNIDAVALVTRDAD--FLPVINKAKEN-GKETIVIG-AEPGFSTALQNSADIAII 154 (160)
T ss_pred ccHHHHHHHHHHhccCCCCEEEEEeccHh--HHHHHHHHHHC-CCEEEEEe-CCCCChHHHHHhcCeEEe
Confidence 3578889999988554 44455556665 77777777654 55566555 232334468899998874
No 348
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=26.28 E-value=2.9e+02 Score=27.59 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=58.9
Q ss_pred EEEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCC----hhhHHHHHHHHHHCCCceEEEe--ccChHHHHHHHHh
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVA--KFNIPLAHMIIAG 476 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~----~~~~~~l~~l~~~~~~~v~~~~--~~~~~~~~~~l~~ 476 (586)
.++|+|-+.-.-|...+-+-++.|+. -++.|+|+.... ..+-+...+...+.+.++.-.+ .|+..++.+++..
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~~ 81 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFIDN 81 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhhc
Confidence 58999999999999999999999976 468899988622 1122222222233443344333 4688888999999
Q ss_pred ccEEEEcCCC
Q 007873 477 ADFILIPSRF 486 (586)
Q Consensus 477 aDi~l~PS~~ 486 (586)
.+.+|=|..+
T Consensus 82 ~~~ilRP~N~ 91 (266)
T COG1692 82 ADRILRPANY 91 (266)
T ss_pred ccceeccCCC
Confidence 9999999875
No 349
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=26.20 E-value=91 Score=23.98 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=46.0
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
+++.|.| +.-+....+.++++..++++.+.. .+-..++.+|+... ..-.....+|.+.|+|+|..+
T Consensus 7 ~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v~~----------~~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 7 EGCTFCI-SGFDSDEREELEQLIKKHGGTVSN----------SFSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp TTEEEEE-SSTSSSHHHHHHHHHHHTTEEEES----------SSSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEETH
T ss_pred CCEEEEE-ccCCCCCHHHHHHHHHHcCCEEEe----------ecccCcEEEEeCCC-CCccHHHHHHHHCCCeEecHH
Confidence 4778888 444445677889999999865521 24456677776554 346677999999999998754
No 350
>PRK05920 aromatic acid decarboxylase; Validated
Probab=26.16 E-value=1.2e+02 Score=29.25 Aligned_cols=36 Identities=22% Similarity=0.092 Sum_probs=26.7
Q ss_pred CceEEEEeccccCccccchHH-HHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLG-DVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~-~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.+||++.-+ ||.+ ....++.+.|.+.||+|.++...
T Consensus 3 ~krIllgIT--------Gsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAIT--------GASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEEe--------CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 567776653 3333 46677999999999999999865
No 351
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=26.10 E-value=2.1e+02 Score=26.35 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=52.1
Q ss_pred EEEEEecCccccCHHHHHHHH------hhcccC-CeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH
Q 007873 404 VIGFIGRLEEQKGSDILAAAI------PHFIKE-NVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 475 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~------~~l~~~-~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~ 475 (586)
+++.+|.-. +|.|+.++ ++|.+. =.+|+| +|.|..-..+...... +..+-......|.. .+.+.++
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~-k~~gl~id~y~f~p-sl~e~I~ 79 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR-KNGGLTIDGYDFSP-SLTEDIR 79 (170)
T ss_pred EEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc-ccCCeEEEEEecCc-cHHHHHh
Confidence 566666544 66666544 233332 244544 6776422333333333 22221222223433 3456888
Q ss_pred hccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC
Q 007873 476 GADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 508 (586)
Q Consensus 476 ~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~ 508 (586)
.||+++- -.-.-+++|.+..|+|.|+--.
T Consensus 80 ~AdlVIs----HAGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 80 SADLVIS----HAGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred hccEEEe----cCCcchHHHHHHcCCCEEEEeC
Confidence 8999984 2334578999999999876543
No 352
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=26.09 E-value=64 Score=35.40 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=24.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++.- ..|++ -|.+|+++||+|+++=.+
T Consensus 1 ~rVai~GaG------~AgL~-----~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAG------LAGLA-----AAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEccc------HHHHH-----HHHHHHhCCCceEEEecc
Confidence 678887743 24444 678899999999999654
No 353
>PLN00198 anthocyanidin reductase; Provisional
Probab=25.97 E-value=87 Score=32.34 Aligned_cols=37 Identities=22% Similarity=0.093 Sum_probs=24.7
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.+.+|+|++.+ |.|-.=..|+++|.++||+|.++...
T Consensus 6 ~~~~~~vlItG----------~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 6 PTGKKTACVIG----------GTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCCCCeEEEEC----------CchHHHHHHHHHHHHCCCEEEEEECC
Confidence 45566665544 33333455899999999999877644
No 354
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=25.93 E-value=1.1e+02 Score=30.18 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=31.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+|+.|... + ..|-.+.+..|++.|.++|++|-++-+.
T Consensus 1 m~vi~ivG~--~---gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF--K---DSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC--C---CChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 777777753 2 5788889999999999999999999654
No 355
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=25.84 E-value=91 Score=30.46 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=23.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+|++++. +||+| ..+++.|.++|++|.+++.+
T Consensus 1 ~~vlItGa-------sg~iG---~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 1 MIVLVTGA-------TAGFG---ECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CEEEEECC-------CchHH---HHHHHHHHHCCCEEEEEECC
Confidence 56666553 36665 44788899999999888654
No 356
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=25.83 E-value=81 Score=31.77 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=25.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhC---CCeEEEEEecCCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN---GHRVMTIAPRYDQ 130 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~---Gh~V~vvt~~~~~ 130 (586)
||||+.+..-. ..-| +..|.++|++. |++|+|++|..+|
T Consensus 1 M~ILlTNDDGI---~a~G----l~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITNDDGI---NAPG----LEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEcCCCC---CCHh----HHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 79998887621 1233 44566666553 4799999998543
No 357
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=25.71 E-value=33 Score=25.56 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=18.3
Q ss_pred HHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHH
Q 007873 494 LHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 547 (586)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~ 547 (586)
--|..+|+|+++.+..=..+.|..+.+-|-. +..++++|.++|+
T Consensus 9 ~~A~~~~lp~~~gSDAH~~~~vG~~~t~~~~----------~~~s~~~l~~alr 52 (56)
T PF13263_consen 9 ELAEKYGLPFTGGSDAHFLEEVGRGYTEFEG----------PIRSPEELLEALR 52 (56)
T ss_dssp HHHHHTT--EEEE--BSSGGGTTTTHHHH-------------------------
T ss_pred HHHHHcCCCeEeEEcccChhhcCCEeeeccc----------ccccccccccccc
Confidence 3467789999999877777777766655543 5566777777665
No 358
>PLN02240 UDP-glucose 4-epimerase
Probab=25.65 E-value=90 Score=32.28 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
+++++|++.+. +|++| ..|++.|.++||+|.++.
T Consensus 3 ~~~~~vlItGa-------tG~iG---~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGG-------AGYIG---SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEe
Confidence 45567776543 35554 457888999999998886
No 359
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.63 E-value=6.1e+02 Score=24.39 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=26.9
Q ss_pred HHHhccEEEE-cCCCCCCcHHHHHHHHcCCcEEEcCCc
Q 007873 473 IIAGADFILI-PSRFEPCGLIQLHAMRYGTVPIVASTG 509 (586)
Q Consensus 473 ~l~~aDi~l~-PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (586)
+-.++|.+++ |...+...-.+-++...|+|||..+.+
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 4456786654 455566667777888899999998877
No 360
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=25.63 E-value=6.2e+02 Score=24.45 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=52.4
Q ss_pred HHHHHHHhhcccCCeEEEEEeCCC---hhhHHHHHHHHHHCCCc-eEEEecc-----ChHHHHHHHHhccEEEEcCC---
Q 007873 418 DILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILYPEK-ARGVAKF-----NIPLAHMIIAGADFILIPSR--- 485 (586)
Q Consensus 418 d~Ll~A~~~l~~~~v~lvIvG~g~---~~~~~~l~~l~~~~~~~-v~~~~~~-----~~~~~~~~l~~aDi~l~PS~--- 485 (586)
+.+-+.+++....+.+++++.+.. ..+.+...+...+++.. +...... +.+...+.+..||++++.-=
T Consensus 16 ~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~ 95 (217)
T cd03145 16 AILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQL 95 (217)
T ss_pred HHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHH
Confidence 333334444433566667766542 23333444444445432 3332222 24555678999999988641
Q ss_pred -----CCCCc--HHHHHHHHcCCcEEEcCCcCcc
Q 007873 486 -----FEPCG--LIQLHAMRYGTVPIVASTGGLV 512 (586)
Q Consensus 486 -----~E~~g--l~~lEAma~G~PvI~s~~gg~~ 512 (586)
+...+ -.+-++...|+|++.++.|.+.
T Consensus 96 ~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i 129 (217)
T cd03145 96 RITSALGGTPLLDALRKVYRGGVVIGGTSAGAAV 129 (217)
T ss_pred HHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHh
Confidence 22323 3466677899999988866543
No 361
>PRK09358 adenosine deaminase; Provisional
Probab=25.52 E-value=7.6e+02 Score=25.48 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=46.1
Q ss_pred HHHHHHHHhhcccCCeEEEEE-eCCChhhHHHHHHHHHHCCCceEEEeccC--hHHHHHHHHhccEEE--EcCCCCC---
Q 007873 417 SDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFN--IPLAHMIIAGADFIL--IPSRFEP--- 488 (586)
Q Consensus 417 ~d~Ll~A~~~l~~~~v~lvIv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~--~~~~~~~l~~aDi~l--~PS~~E~--- 488 (586)
.+.+.+++....+.++.+.+- |.... ...+.+....++.....++... .+...++++..++.+ +|+..--
T Consensus 181 ~~~~~~~~~~A~~~g~~~~~H~~E~~~--~~~~~~al~~lg~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~ 258 (340)
T PRK09358 181 PSKFARAFDRARDAGLRLTAHAGEAGG--PESIWEALDELGAERIGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGA 258 (340)
T ss_pred HHHHHHHHHHHHHCCCCeEEcCCCCCc--hhHHHHHHHHcCCcccchhhhhccCHHHHHHHHHcCCeEEECCCccccccc
Confidence 455556666555445555543 32110 1122222222332233455442 354567888887765 6764321
Q ss_pred ---Cc-HHHHHHHHcCCcE-EEcCCc
Q 007873 489 ---CG-LIQLHAMRYGTVP-IVASTG 509 (586)
Q Consensus 489 ---~g-l~~lEAma~G~Pv-I~s~~g 509 (586)
++ -.+-+.+..|+|| |+||.+
T Consensus 259 ~~~~~~~pi~~l~~~Gv~v~lgTD~~ 284 (340)
T PRK09358 259 VPSLAEHPLKTLLDAGVRVTINTDDP 284 (340)
T ss_pred cCCcccChHHHHHHCCCEEEECCCCC
Confidence 12 2467778899988 556643
No 362
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=25.45 E-value=3.8e+02 Score=25.45 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=22.5
Q ss_pred hccEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 007873 476 GADFILIPSRFEPCGLIQLHAMRYGTVPIVA 506 (586)
Q Consensus 476 ~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s 506 (586)
.=|++++.... .-..++.||...|+|+|+-
T Consensus 127 ~Pdlviv~~~~-~~~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 127 LPDLVIVLDPR-KEHQAIREASKLGIPVIAI 156 (193)
T ss_pred CCCEEEEeCCc-cchHHHHHHHHcCCCEEEE
Confidence 44666665543 2378899999999999886
No 363
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=25.36 E-value=4.8e+02 Score=27.49 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=73.0
Q ss_pred ecCccccCHHHHHHHHhhcccCCeEEEEEeCCCh---hhHHHHHHHHHHC-CCceEEEeccChHHHH--HHHHhccEEEE
Q 007873 409 GRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK---PMEKQLEQLEILY-PEKARGVAKFNIPLAH--MIIAGADFILI 482 (586)
Q Consensus 409 Grl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~---~~~~~l~~l~~~~-~~~v~~~~~~~~~~~~--~~l~~aDi~l~ 482 (586)
|++....--+.+.+++.++.+.+-+++++|.+-. .....++.+.+++ |+++...+.-....+- .=++.+....+
T Consensus 30 ~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pv 109 (355)
T PTZ00182 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPI 109 (355)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 4444443445566676666555555666665432 1233467788888 6776666554333221 12233333333
Q ss_pred cCC-CCCCcHHHHHH------HH-------cCCcEEEcCCcCcccccccCcceEEEc--cccccccCCCCCCHHHHHHHH
Q 007873 483 PSR-FEPCGLIQLHA------MR-------YGTVPIVASTGGLVDTVEEGFTGFQMG--SFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 483 PS~-~E~~gl~~lEA------ma-------~G~PvI~s~~gg~~e~v~~g~~G~~~~--~~~~~~~~v~~~d~~~la~~I 546 (586)
.+. +-.|-.-.+|- +. ..+|+|.+..+|...--.....+-.-+ +-.-...++.|.|+.++...+
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHH
Confidence 222 34454444552 21 368888776544322111111000000 000012235899999999999
Q ss_pred HHHHHhcC
Q 007873 547 RRALATYG 554 (586)
Q Consensus 547 ~~ll~~~~ 554 (586)
+.++++.+
T Consensus 190 ~~a~~~~~ 197 (355)
T PTZ00182 190 KAAIRDPN 197 (355)
T ss_pred HHHHhCCC
Confidence 99997643
No 364
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.34 E-value=54 Score=31.78 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=22.3
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 101 GGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 101 GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
+|.|..=..|+..|++.||+|++-+.+.
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 4455555669999999999999998764
No 365
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=25.31 E-value=7.1e+02 Score=25.04 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=53.6
Q ss_pred cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcC--CC-CCC
Q 007873 413 EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPS--RF-EPC 489 (586)
Q Consensus 413 ~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS--~~-E~~ 489 (586)
..-|=|.+++++-+-..++++++++...+... ...++ +.....++.......+..+|++|+.. .+ +..
T Consensus 10 ~N~GDe~~l~~~l~~l~~~~~~~v~s~~p~~~-------~~~~~--v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~ 80 (298)
T TIGR03609 10 GNLGDEALLAALLRELPPGVEPTVLSNDPAET-------AKLYG--VEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVT 80 (298)
T ss_pred CCcchHHHHHHHHHhcCCCCeEEEecCChHHH-------HhhcC--ceEEccCCHHHHHHHHHHCCEEEECCcccccCCc
Confidence 46677888887744334778888887665322 22333 55555666666667899999999874 22 221
Q ss_pred c--------HHHHHHHHcCCcEEEcC
Q 007873 490 G--------LIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 490 g--------l~~lEAma~G~PvI~s~ 507 (586)
+ ....-|..+|+|++.-.
T Consensus 81 ~~~~~~~~~~~~~~a~~~~k~~~~~g 106 (298)
T TIGR03609 81 SFRSLLYYLGLMRLARLFGKPVILWG 106 (298)
T ss_pred ccccHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 12344667899997754
No 366
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.94 E-value=7e+02 Score=24.88 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=64.3
Q ss_pred EEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--ChHHHHHHHHhcc--EEE
Q 007873 406 GFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGAD--FIL 481 (586)
Q Consensus 406 ~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~aD--i~l 481 (586)
+..-+.-.+.|++.+++.+.+. .+.-+++=+-+.+....+.+...+++-.......- +.+.+..+.+.++ +++
T Consensus 93 m~Y~Npi~~~G~e~f~~~~~~a---GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 93 LTYYNLIFRKGVEEFYAKCKEV---GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYL 169 (256)
T ss_pred EEeccHHhhhhHHHHHHHHHHc---CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 3333444578999999998876 33433333434223334445555666444444444 3456677899998 455
Q ss_pred EcCC--C-C--CCcHHHHHHHH-----cCCcEEEcCCcCcc--c----ccccCcceEEEccccc
Q 007873 482 IPSR--F-E--PCGLIQLHAMR-----YGTVPIVASTGGLV--D----TVEEGFTGFQMGSFSV 529 (586)
Q Consensus 482 ~PS~--~-E--~~gl~~lEAma-----~G~PvI~s~~gg~~--e----~v~~g~~G~~~~~~~~ 529 (586)
+++. . + .+.-.+.|-+. .++|+++ .+|+. | +...|..|+++|+-.+
T Consensus 170 vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~v--gfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 170 VSRAGVTGARNRAASALNELVKRLKAYSAKPVLV--GFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred EECCCCCCCcccCChhHHHHHHHHHhhcCCCEEE--eCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 5542 0 1 13323333332 4778665 33432 3 3445688999974433
No 367
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=24.93 E-value=1e+02 Score=30.34 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=24.2
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|+|++++. +|++| ..+++.|.++||+|.+++..
T Consensus 17 ~~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEecC
Confidence 477877765 35555 44777788899999888654
No 368
>PRK13243 glyoxylate reductase; Reviewed
Probab=24.90 E-value=2.6e+02 Score=29.16 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=33.0
Q ss_pred HHHHHHhccEEEEcC--CCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILIPS--RFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS--~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++-- ..|+ ++-..+++|--|.-+|-+..|++.+
T Consensus 198 l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 198 LEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVD 246 (333)
T ss_pred HHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcC
Confidence 556899999987643 3333 4556888999999999998888765
No 369
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.87 E-value=3.6e+02 Score=26.89 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=51.6
Q ss_pred HHHHHHHHhccEEEEcCC-CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
+.-..-++.||+++.-.. +|++=-.+++.+ .+.+++....++..+--. ..--+ |.+|.+...+++.|
T Consensus 44 p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~~~~-~dPH~----------Wldp~n~~~~a~~I 111 (264)
T cd01020 44 PTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDDKEG-DNPHL----------WYDPETMSKVANAL 111 (264)
T ss_pred HHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccCCCC-CCCce----------ecCHhHHHHHHHHH
Confidence 333458899999998663 577666666655 455666655443211000 01112 34999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHH
Q 007873 547 RRALATYGTQALAEMMKNG 565 (586)
Q Consensus 547 ~~ll~~~~~~~~~~~~~~~ 565 (586)
.+.|..-.++......+|+
T Consensus 112 ~~~L~~~dP~~~~~y~~N~ 130 (264)
T cd01020 112 ADALVKADPDNKKYYQANA 130 (264)
T ss_pred HHHHHHhCcccHHHHHHHH
Confidence 9999764444333344443
No 370
>PRK08163 salicylate hydroxylase; Provisional
Probab=24.87 E-value=75 Score=33.62 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=26.2
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+.++|++|+.- .+|+. +|.+|++.|++|+|+=.
T Consensus 3 ~~~~V~IvGaG------iaGl~-----~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 3 KVTPVLIVGGG------IGGLA-----AALALARQGIKVKLLEQ 35 (396)
T ss_pred CCCeEEEECCc------HHHHH-----HHHHHHhCCCcEEEEee
Confidence 45799999964 36666 88889999999999943
No 371
>PRK06703 flavodoxin; Provisional
Probab=24.75 E-value=1.2e+02 Score=27.39 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=29.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+++-.. .+|....+...+++.|.+.|++|.++-..
T Consensus 2 mkv~IiY~S-----~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 2 AKILIAYAS-----MSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 566665432 27899999999999999999999987543
No 372
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=24.67 E-value=91 Score=29.76 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+||+|..+ - .++++|+++|.+.|++|+|+--.
T Consensus 2 ~~IL~IDNy-D---------SFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 2 MMILLIDNY-D---------SFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred ceEEEEECc-c---------chHHHHHHHHHHcCCceEEEECC
Confidence 789999864 1 27999999999999999998643
No 373
>PRK06849 hypothetical protein; Provisional
Probab=24.53 E-value=93 Score=33.08 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++|+||+++... | ....++++|.+.||+|.++...
T Consensus 3 ~~~~VLI~G~~~-~---------~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARA-P---------AALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCc-H---------HHHHHHHHHHHCCCEEEEEeCC
Confidence 478999987652 2 3566999999999999999765
No 374
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=24.45 E-value=1.4e+02 Score=28.52 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=26.6
Q ss_pred ceEEEEeccccCccccchH-HHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~-~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|||+.|+.. |. .++. ...+....+.+.+.|++|.++--
T Consensus 1 mkIl~I~GS--pr--~~S~t~~l~~~~~~~l~~~g~ev~~idL 39 (191)
T PRK10569 1 MRVITLAGS--PR--FPSRSSALLEYAREWLNGLGVEVYHWNL 39 (191)
T ss_pred CEEEEEEcC--CC--CCChHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 899999875 42 2443 34555566778789999998854
No 375
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=24.41 E-value=6.9e+02 Score=24.62 Aligned_cols=105 Identities=11% Similarity=0.035 Sum_probs=60.3
Q ss_pred EEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC-----hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~-----~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
+++..+++...-=++-..+.++.+....-+++++-+.. +.|.+..++.-.+++..+...-.. ++..+.+..||
T Consensus 4 ll~s~~~~~~~~~l~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~d~~~~l~~ad 81 (233)
T PRK05282 4 LLLSNSTLPGTGYLEHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--ADPVAAIENAE 81 (233)
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--hhhHHHHhcCC
Confidence 44455555442223445555555533445566666532 334555556656666444433222 33446899999
Q ss_pred EEEEcCC--------CC--CCcHHHHHHHHcCCcEEEcCCcC
Q 007873 479 FILIPSR--------FE--PCGLIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 479 i~l~PS~--------~E--~~gl~~lEAma~G~PvI~s~~gg 510 (586)
++.++-= +. ++--.+-|+...|+|++.++.|.
T Consensus 82 ~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 82 AIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred EEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 8888741 22 33344668889999999988776
No 376
>PRK06179 short chain dehydrogenase; Provisional
Probab=24.39 E-value=93 Score=30.78 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.4
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+||+| ..+++.|+++|++|.+++.+
T Consensus 13 sg~iG---~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 13 SSGIG---RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 45655 56888999999999888754
No 377
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=24.35 E-value=1e+02 Score=32.11 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=24.6
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++|+|++.+. +|++| ..+++.|.++||+|.++..+
T Consensus 3 ~~k~ilItGa-------tG~IG---~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 3 QGKKVLVTGH-------TGFKG---SWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CCCEEEEECC-------CChhH---HHHHHHHHHCCCEEEEEeCC
Confidence 3567766553 35554 56889999999999887643
No 378
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=24.24 E-value=98 Score=30.17 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=37.5
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCc-ceEEEEEeCC
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT-DVVIELKVGD 147 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~-~~~~~~~~~~ 147 (586)
+|+++++.--| +...++++|++..-+++++|.+|.+...+... .+..++.+|+
T Consensus 80 ~vi~lsP~G~~---------f~Q~~a~eLa~~~~~liliCGrYEGiDeRv~~~~vdeEiSIGD 133 (222)
T PRK14599 80 IVILTSPSGIP---------FNQTIARELKESGKPLTFISGYYEGVDHRVTEHLVDMEMSLGN 133 (222)
T ss_pred cEEEECCCCCc---------cCHHHHHHHHhCCCCEEEEeccccCcHHHHHhhhCcEEEeecc
Confidence 68887765333 56779999986556799999999887765432 4555666665
No 379
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=24.11 E-value=1.3e+02 Score=26.99 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=22.4
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
..|....+.+||..|+++|++|.++-..
T Consensus 11 g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 11 GVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp TSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 5788889999999999999998888654
No 380
>PRK05993 short chain dehydrogenase; Provisional
Probab=24.09 E-value=97 Score=30.96 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=19.3
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++..+
T Consensus 13 sggiG---~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 13 SSGIG---AYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 46666 44788899999999888654
No 381
>PTZ00124 adenosine deaminase; Provisional
Probab=24.08 E-value=8.7e+02 Score=25.67 Aligned_cols=152 Identities=9% Similarity=-0.033 Sum_probs=76.0
Q ss_pred EEEEecCccccCHHHHHHHHhhcccCCeEEEE-EeC--CChhhHHHHHHHHHHCCCceEEEecc--ChHHHHHHHHhccE
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIV-LGT--GKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGADF 479 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvI-vG~--g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~aDi 479 (586)
|+-+|--+...+...+.+++...++..+.+.+ +|. +..... .+.+....++..-.+++.. ..+.+.+.++.-.+
T Consensus 193 vvGiDLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~-~v~~ai~~l~~~RIGHG~~~~~d~~l~~~l~~~~I 271 (362)
T PTZ00124 193 FVGFDHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLN-TLYSAIQVLKVKRIGHGIRVAESQELIDMVKEKDI 271 (362)
T ss_pred eEEEeccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcch-hHHHHHHHhCCCccccccccCCCHHHHHHHHHcCC
Confidence 44445445555666677888777666666665 443 121111 2222222233334445544 34555566766655
Q ss_pred E--EEcCCCC---C----CcHHHHHHHHcCCcE-EEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 480 I--LIPSRFE---P----CGLIQLHAMRYGTVP-IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 480 ~--l~PS~~E---~----~gl~~lEAma~G~Pv-I~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
. ++|+..- . ..-.+-.-+..|+|| |+||..++-.. .-.+++.......
T Consensus 272 ~lEvCPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t----------------------~l~~Ey~~~~~~~ 329 (362)
T PTZ00124 272 LLEVCPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLT----------------------NINDDYEELYTHL 329 (362)
T ss_pred eEEECCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCC----------------------ChhHHHHHHHHHc
Confidence 4 4554321 1 112355568889988 66665544321 1122222222211
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007873 550 LATYGTQALAEMMKNGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 550 l~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 581 (586)
....+.+.++..|++...|--+..-+++.+
T Consensus 330 --gls~~~l~~l~~nai~asF~~~~~K~~l~~ 359 (362)
T PTZ00124 330 --NFTLADFMKMNEWALEKSFLDKDIKLKIKK 359 (362)
T ss_pred --CCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 123566777777777655655555555443
No 382
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=24.05 E-value=1.4e+02 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=29.8
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+.|++.|++. .| ..|-.+...+||.+|++.|++|.+|=.
T Consensus 102 ~~~vi~vts~-~~---g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSA-KS---GEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECC-CC---CCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4566666653 23 467888999999999999999999943
No 383
>PRK05723 flavodoxin; Provisional
Probab=24.02 E-value=1.1e+02 Score=27.90 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=28.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
|||.++-.. .+|-.+.+...|+..|.+.|++|.++.
T Consensus 1 ~~i~I~ygS-----~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSGS-----VYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEEc-----CchHHHHHHHHHHHHHHHCCCceeecC
Confidence 677666322 378899999999999999999998753
No 384
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.99 E-value=1e+02 Score=32.17 Aligned_cols=75 Identities=24% Similarity=0.448 Sum_probs=46.7
Q ss_pred ceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEecCC-CccccCCcceEEEEEeCCeeeEEEEEEEEeCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPRYD-QYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (586)
|+|+|++. .||+|. ....++-.|++.|.+|.+++.... ...|. +...++.....+. ++
T Consensus 2 ~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~------f~~elg~~~~~I~------~n 62 (322)
T COG0003 2 TRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDV------FDLELGHDPRKVG------PN 62 (322)
T ss_pred cEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhh------hccccCCchhhcC------CC
Confidence 68888885 588888 667788999999988888875432 12221 2222333222221 56
Q ss_pred ceEEEEcCccccccccC
Q 007873 162 VDRVFVDHPWFLAKVWG 178 (586)
Q Consensus 162 v~~~~v~~~~~~~~~w~ 178 (586)
+...-+|....+.+.|+
T Consensus 63 L~a~eiD~~~~l~ey~~ 79 (322)
T COG0003 63 LDALELDPEKALEEYWD 79 (322)
T ss_pred CceeeecHHHHHHHHHH
Confidence 77777776666665553
No 385
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=23.98 E-value=6.6e+02 Score=24.20 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=59.7
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH----hccEEEEcCCC-CCCcHHHHHHHHc---CCcEE
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~----~aDi~l~PS~~-E~~gl~~lEAma~---G~PvI 504 (586)
+++|+.+.+ .....+..+.....+.......-+.......+. ..|++++-... +.-|+.+++.+.- ++|+|
T Consensus 3 ~VLivdd~~-~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 3 NVLIVDDDA-MVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eEEEEcCCH-HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 556666554 233344444433322111112224444444442 36888876543 4456666666642 56665
Q ss_pred EcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
.-. ... ..+.+..|..|++. .|.+++++.++|.++
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~----------Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLI----------KPFQASRFEEALTGW 120 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHH
Confidence 443 222 23455678899997 899999999999864
No 386
>PLN02572 UDP-sulfoquinovose synthase
Probab=23.92 E-value=98 Score=33.69 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
+.|||++.+. .|++| ..|++.|.++||+|.++.
T Consensus 46 ~~k~VLVTGa-------tGfIG---s~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGG-------DGYCG---WATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEECC-------CcHHH---HHHHHHHHHCCCeEEEEe
Confidence 4567665443 34444 558899999999999874
No 387
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.87 E-value=94 Score=31.02 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=18.9
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++..+
T Consensus 13 sggiG---~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 13 SSGFG---RALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CChHH---HHHHHHHHhCcCEEEEEeCC
Confidence 45655 45778889999999988754
No 388
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=23.86 E-value=1e+02 Score=32.98 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=27.8
Q ss_pred CCceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEE
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt 125 (586)
..++|+-|... .||+|. ...+|+.+|+.+|++|.+|=
T Consensus 104 ~~~~vIai~n~------KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 104 VFPPVIGVAAH------KGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCCeEEEEECC------CCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 34666656543 577765 56889999999999999983
No 389
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=23.76 E-value=5.6e+02 Score=25.13 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=55.9
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC-hhhHHHHHHHHHHCCCceEEE-eccChHH-HHHHHH-hcc
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYPEKARGV-AKFNIPL-AHMIIA-GAD 478 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~-~~~~~~l~~l~~~~~~~v~~~-~~~~~~~-~~~~l~-~aD 478 (586)
|++.+..+-++.+.++.|.+++..+ ++.-++.|+-. ......++.++.+++-++... ...++.. +..++. +-+
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l---~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~ 137 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRL---KVDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFE 137 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhC---cccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCe
Confidence 3555556668899999999999999 47888888854 445668888888888533322 2234443 333443 367
Q ss_pred EEEEcCCCCCCc
Q 007873 479 FILIPSRFEPCG 490 (586)
Q Consensus 479 i~l~PS~~E~~g 490 (586)
+.|+....++++
T Consensus 138 ~~Iv~Vsa~gL~ 149 (223)
T COG2102 138 AIIVAVSAEGLD 149 (223)
T ss_pred EEEEEEeccCCC
Confidence 777665544443
No 390
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=23.74 E-value=3.2e+02 Score=28.38 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcccCCeE-E-EEEeCCC---hhhHHHHHHHHHHCCCceEEEeccChHH----HHHHHHhccEEEEcCCC-
Q 007873 417 SDILAAAIPHFIKENVQ-I-IVLGTGK---KPMEKQLEQLEILYPEKARGVAKFNIPL----AHMIIAGADFILIPSRF- 486 (586)
Q Consensus 417 ~d~Ll~A~~~l~~~~v~-l-vIvG~g~---~~~~~~l~~l~~~~~~~v~~~~~~~~~~----~~~~l~~aDi~l~PS~~- 486 (586)
++.-+++++++. |+++ + +++..+. ....++++..+.+.+-.+.....-+..+ ...+....|++..|...
T Consensus 145 v~q~i~lik~~~-Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 145 VAQQIELIKALL-PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred HHHHHHHHHHhC-CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH
Confidence 344455555542 4554 3 4566554 2345556666666664444443322222 22355778998888753
Q ss_pred C--CCcHHHHHHHHcCCcEEEcCCcCcccccccCcc
Q 007873 487 E--PCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFT 520 (586)
Q Consensus 487 E--~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~ 520 (586)
. .+...+.+|...++|+++++. +.+++|.+
T Consensus 224 i~s~~~~l~~~a~~~kiPli~sd~----~~V~~Ga~ 255 (322)
T COG2984 224 IVSAIESLLQVANKAKIPLIASDT----SSVKEGAL 255 (322)
T ss_pred HHHHHHHHHHHHHHhCCCeecCCH----HHHhcCcc
Confidence 2 456668899999999999995 45555544
No 391
>PRK05693 short chain dehydrogenase; Provisional
Probab=23.68 E-value=86 Score=31.17 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=23.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||.++|+.- .||+| ..+++.|+++|++|.+++.+
T Consensus 1 mk~vlItGa------sggiG---~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITGC------SSGIG---RALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEecC------CChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 565566532 46666 45778889999999888654
No 392
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=23.63 E-value=6.5e+02 Score=24.00 Aligned_cols=109 Identities=14% Similarity=0.241 Sum_probs=63.3
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEe-ccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc---CCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVA-KFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~-~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~---G~Pv 503 (586)
.++++|+.+.+. ....+..+....++ ..... ..+..+....+. ..|++++-... ..-|+.++..+.. .+|+
T Consensus 4 ~~~ilivdd~~~-~~~~l~~~L~~~~~-~~~v~~a~~~~~al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~i 81 (225)
T PRK10046 4 PLTLLIVEDETP-LAEMHAEYIRHIPG-FSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDV 81 (225)
T ss_pred cceEEEECCCHH-HHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCE
Confidence 467777776552 33445555444332 22222 234454444443 36888875543 3356666666643 3455
Q ss_pred EE-cCCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 504 IV-ASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 504 I~-s~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
|. |.... ..+.+..|..|++. .|.+.++|.++|.++..
T Consensus 82 ivls~~~~~~~~~~al~~Ga~~yl~----------Kp~~~~~L~~~i~~~~~ 123 (225)
T PRK10046 82 VFTTAASDMETVSEAVRCGVFDYLI----------KPIAYERLGQTLTRFRQ 123 (225)
T ss_pred EEEEcCCCHHHHHHHHHcCccEEEE----------CCcCHHHHHHHHHHHHH
Confidence 44 33222 33455678899997 99999999999988654
No 393
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=23.57 E-value=53 Score=29.19 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=25.0
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
...+|||.||+.- ++-..|+.+|.+.||+|.-+..+.
T Consensus 7 ~~~~l~I~iIGaG-----------rVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAG-----------RVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTS-----------CCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCCccEEEEECCC-----------HHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3457999999852 234559999999999998887653
No 394
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=23.53 E-value=8.5e+02 Score=25.42 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=71.6
Q ss_pred hcCCEEEEe--CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 315 LESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 315 ~~ad~vitv--S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
..+|.|+.= .+...+++.+. ..+- |.|+.| ...+|... ..+--.+++
T Consensus 100 ~y~D~iviR~~~~~~~~~~a~~-------------~~vP-VINa~~-~~~HPtQa----------------LaDl~Ti~e 148 (331)
T PRK02102 100 RMYDGIEYRGFKQEIVEELAKY-------------SGVP-VWNGLT-DEWHPTQM----------------LADFMTMKE 148 (331)
T ss_pred hcCCEEEEECCchHHHHHHHHh-------------CCCC-EEECCC-CCCChHHH----------------HHHHHHHHH
Confidence 347766653 34445555431 1333 357776 46777531 223445566
Q ss_pred HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC----hhhHHHHHHHHHHCCCceEEEeccChH
Q 007873 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIP 468 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~----~~~~~~l~~l~~~~~~~v~~~~~~~~~ 468 (586)
++|-- +...|.|+|-+.. .=..-++.++..+ ++.+.+++... +...+..+++++..+.++.. .+
T Consensus 149 ~~g~l---~g~~va~vGd~~~-~v~~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~---~~-- 216 (331)
T PRK02102 149 HFGPL---KGLKLAYVGDGRN-NMANSLMVGGAKL---GMDVRICAPKELWPEEELVALAREIAKETGAKITI---TE-- 216 (331)
T ss_pred HhCCC---CCCEEEEECCCcc-cHHHHHHHHHHHc---CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEE---Ec--
Confidence 66632 3368999998742 2345566666666 67899998643 12333344455555543322 12
Q ss_pred HHHHHHHhccEEEEcC
Q 007873 469 LAHMIIAGADFILIPS 484 (586)
Q Consensus 469 ~~~~~l~~aDi~l~PS 484 (586)
.+.+.+.+||++..-.
T Consensus 217 d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 217 DPEEAVKGADVIYTDV 232 (331)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 2345899999998853
No 395
>PRK06924 short chain dehydrogenase; Provisional
Probab=23.51 E-value=91 Score=30.34 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=18.8
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.+++..
T Consensus 10 sggiG---~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 10 SQGLG---EAIANQLLEKGTHVISISRT 34 (251)
T ss_pred CchHH---HHHHHHHHhcCCEEEEEeCC
Confidence 35555 45799999999999887643
No 396
>PRK10818 cell division inhibitor MinD; Provisional
Probab=23.45 E-value=97 Score=30.91 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=22.1
Q ss_pred cchH--HHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGL--GDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~--~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+ .+...+||.+|+++|++|.++=..
T Consensus 11 KGGvGKTt~a~nlA~~la~~g~~vllvD~D 40 (270)
T PRK10818 11 KGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40 (270)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3554 457888999999999999999544
No 397
>PLN02206 UDP-glucuronate decarboxylase
Probab=23.38 E-value=88 Score=34.11 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=24.9
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
+.|||++.+ |.|-+=..|++.|.++||+|.++.
T Consensus 118 ~~~kILVTG----------atGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTG----------GAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEEC----------cccHHHHHHHHHHHHCcCEEEEEe
Confidence 569987654 445445568999999999999875
No 398
>PRK14627 hypothetical protein; Provisional
Probab=23.31 E-value=2.2e+02 Score=24.10 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=36.2
Q ss_pred cEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-|-.+..||++.+.-.|..-++ +..+|.+.++|.|++.|.+.|..++++
T Consensus 28 ~veg~sggG~VkV~~~G~~~v~--~i~Idp~ll~~ed~e~LeDLI~aA~N~ 76 (100)
T PRK14627 28 IVEGTAGGGAITVKMNGHREVQ--SITISPEVVDPDDVEMLQDLLLVAIND 76 (100)
T ss_pred EEEEEEcCCeEEEEEEcCccEE--EEEECHHHcCcccHHHHHHHHHHHHHH
Confidence 3445566788887776533222 566778889999999999999999886
No 399
>PRK14629 hypothetical protein; Provisional
Probab=23.24 E-value=1.9e+02 Score=24.48 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=38.3
Q ss_pred CcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-|-.+..||+..+.-.|..-+. +..+|.+.++|.|++-|.+-|..++++
T Consensus 29 ~~veg~aggGlVkV~~nG~~~v~--~i~Idp~lld~eD~e~LeDLI~aAvNd 78 (99)
T PRK14629 29 IVVCGRAGSDVVVVEMNGEFNVK--KVSIKEEFFDDLDNEALEHMIKSAFND 78 (99)
T ss_pred cEEEEEecCCEEEEEEEcCccEE--EEEECHHHcCcccHHHHHHHHHHHHHH
Confidence 34566677888888877654433 456778888999999999999999876
No 400
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=23.05 E-value=4.1e+02 Score=25.62 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=66.0
Q ss_pred EEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHH-HHHHhccEE-E
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAH-MIIAGADFI-L 481 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~-~~l~~aDi~-l 481 (586)
.++-.|.+-.....+..++ -..+|++.+.-+.+ +.+.....+ .....+..+.+++. ..-.++|.+ +
T Consensus 63 ~~iGaGTV~~~~~~~~a~~-------aGA~fivsp~~~~~----v~~~~~~~~-~~~~~G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 63 ALIGAGTVLSPEQVDRLAD-------AGGRLIVTPNTDPE----VIRRAVALG-MVVMPGVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred cEEeEEecCCHHHHHHHHH-------cCCCEEECCCCCHH----HHHHHHHCC-CcEEcccCCHHHHHHHHHcCCCEEEE
Confidence 6777777766554444332 36678888765532 333333333 24445555555543 355678888 4
Q ss_pred EcCCCCCCcHHHHHHHHc----CCcEEEcCCcCc-----ccccccCcceEEEcccc
Q 007873 482 IPSRFEPCGLIQLHAMRY----GTVPIVASTGGL-----VDTVEEGFTGFQMGSFS 528 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~----G~PvI~s~~gg~-----~e~v~~g~~G~~~~~~~ 528 (586)
+|+ +..|...+..+.- .+|++++ ||+ .++++.|..|+.+++..
T Consensus 131 Fpa--~~~G~~~l~~l~~~~~~~ipvvai--GGI~~~n~~~~~~aGa~~vav~s~l 182 (206)
T PRK09140 131 FPA--SQLGPAGIKALRAVLPPDVPVFAV--GGVTPENLAPYLAAGAAGFGLGSAL 182 (206)
T ss_pred CCC--CCCCHHHHHHHHhhcCCCCeEEEE--CCCCHHHHHHHHHCCCeEEEEehHh
Confidence 564 4688888877764 3666665 443 67888899998876443
No 401
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=23.00 E-value=6.8e+02 Score=24.00 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=48.1
Q ss_pred HhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEec-cChHHHHHHHHhccEEEEcCCC-CCCcHHHHHHHHcCC
Q 007873 424 IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK-FNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGT 501 (586)
Q Consensus 424 ~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~-~~~~~~~~~l~~aDi~l~PS~~-E~~gl~~lEAma~G~ 501 (586)
+..|.+...+++++.... .+.++++.... ++...-. |. ...+..+|+++...-. |.---+.-+|-+.|+
T Consensus 25 ~~~Ll~~ga~VtVvsp~~---~~~l~~l~~~~--~i~~~~~~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~i 95 (205)
T TIGR01470 25 ARLLLKAGAQLRVIAEEL---ESELTLLAEQG--GITWLARCFD----ADILEGAFLVIAATDDEELNRRVAHAARARGV 95 (205)
T ss_pred HHHHHHCCCEEEEEcCCC---CHHHHHHHHcC--CEEEEeCCCC----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCC
Confidence 344444455666665433 24555665432 3543322 22 2357888887765543 344456677778999
Q ss_pred cEEEcCCcCccccc
Q 007873 502 VPIVASTGGLVDTV 515 (586)
Q Consensus 502 PvI~s~~gg~~e~v 515 (586)
||-+.+.....+++
T Consensus 96 lvn~~d~~e~~~f~ 109 (205)
T TIGR01470 96 PVNVVDDPELCSFI 109 (205)
T ss_pred EEEECCCcccCeEE
Confidence 99888876655544
No 402
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.91 E-value=63 Score=29.74 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++.||++|+ .|.+....++.|.+.|++|+|++|.
T Consensus 12 ~~~~vlVvG-----------GG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIG-----------GGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEEC-----------CCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 455666665 2346778899999999999999765
No 403
>PRK14624 hypothetical protein; Provisional
Probab=22.89 E-value=2.2e+02 Score=24.88 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=37.4
Q ss_pred CcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-|-.+..||++.+.-.|..-+. +..+|.+.++|.|++-|.+-|..++++
T Consensus 32 ~~v~g~sGgG~VkV~~nG~~~i~--~i~Idp~lld~eD~E~LeDLI~aAvNd 81 (115)
T PRK14624 32 IRVVGDAGAGMVTVTATGEGQIT--NVFINKQLFDADDNKMLEDLVMAATND 81 (115)
T ss_pred cEEEEEECCcEEEEEEEcCccEE--EEEECHHHcCcccHHHHHHHHHHHHHH
Confidence 44566667888888776643332 456677888999999999999999876
No 404
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=22.88 E-value=98 Score=31.61 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++.+..=+ ....+.+++.++||+|.++.+.
T Consensus 1 m~~~i~~~~~s~~--------s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGTLY--------SCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCcch--------hHHHHHHHHHHcCCeEEEEehH
Confidence 7899998663211 3456999999999999999765
No 405
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=22.80 E-value=6.8e+02 Score=24.30 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=55.3
Q ss_pred EEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcC
Q 007873 405 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPS 484 (586)
Q Consensus 405 i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS 484 (586)
|+=.|+++..-=+|+|++--.. ++++.+-++|+|.+...+.++...... + ---..|++++-|
T Consensus 7 ~ik~GniGts~v~dlllDErAd--Redi~vrVvgsgaKM~Pe~veaav~~~--------------~--e~~~pDfvi~is 68 (277)
T COG1927 7 FIKCGNIGTSPVVDLLLDERAD--REDIEVRVVGSGAKMDPECVEAAVTEM--------------L--EEFNPDFVIYIS 68 (277)
T ss_pred EEEecccchHHHHHHHHHhhcc--cCCceEEEeccccccChHHHHHHHHHH--------------H--HhcCCCEEEEeC
Confidence 4455777665555555543322 379999999999753333332222110 0 001234444433
Q ss_pred --CCCCCcHHHHHHHH-cCCcEE-EcCCcCc--ccccccCcceEEE
Q 007873 485 --RFEPCGLIQLHAMR-YGTVPI-VASTGGL--VDTVEEGFTGFQM 524 (586)
Q Consensus 485 --~~E~~gl~~lEAma-~G~PvI-~s~~gg~--~e~v~~g~~G~~~ 524 (586)
---+-|-..-|.++ +|+|+| .+|.+|+ .|-+++..-|++.
T Consensus 69 PNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIi 114 (277)
T COG1927 69 PNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYII 114 (277)
T ss_pred CCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEE
Confidence 33456667777776 677774 4556663 4555566667665
No 406
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=22.78 E-value=75 Score=34.00 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=24.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCC-eEEEEE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH-RVMTIA 125 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh-~V~vvt 125 (586)
|||++|+.- .+|+. +|.+|++.|| +|+|+=
T Consensus 1 ~~V~IiGgG------iaGla-----~A~~L~~~g~~~v~v~E 31 (414)
T TIGR03219 1 LRVAIIGGG------IAGVA-----LALNLCKHSHLNVQLFE 31 (414)
T ss_pred CeEEEECCC------HHHHH-----HHHHHHhcCCCCEEEEe
Confidence 789999864 36766 8889999996 999984
No 407
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=22.71 E-value=61 Score=34.36 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.8
Q ss_pred hhhhHHHHHhCCCeEEEEEec
Q 007873 107 LGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 107 ~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+..|+++|+++||+|+++++.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH
Confidence 556999999999999999985
No 408
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.66 E-value=6.8e+02 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=21.4
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEE
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCI 265 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~i 265 (586)
++++|.+.+-.++...-.++..+ ++|+|-++
T Consensus 68 ik~lVIACNTASa~al~~LR~~~-------~iPVvGvi 98 (269)
T COG0796 68 IKALVIACNTASAVALEDLREKF-------DIPVVGVI 98 (269)
T ss_pred CCEEEEecchHHHHHHHHHHHhC-------CCCEEEec
Confidence 77766666555555555666654 88999888
No 409
>PHA02518 ParA-like protein; Provisional
Probab=22.59 E-value=95 Score=29.38 Aligned_cols=33 Identities=36% Similarity=0.601 Sum_probs=0.0
Q ss_pred eEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEE
Q 007873 86 NILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTI 124 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vv 124 (586)
||+-|... .||+|. ...+|+.+|+++|++|.++
T Consensus 1 ~ii~v~~~------KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 1 KIIAVLNQ------KGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred CEEEEEcC------CCCCCHHHHHHHHHHHHHhCCCeEEEE
No 410
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=22.56 E-value=4.8e+02 Score=22.15 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=43.5
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeC-CChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHH
Q 007873 416 GSDILAAAIPHFIKENVQIIVLGT-GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 494 (586)
Q Consensus 416 G~d~Ll~A~~~l~~~~v~lvIvG~-g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~l 494 (586)
|.+.+++++.. ..+.+||+-. .++...+.+++++..+. +..+..++.+++-..+-...+.++.-..+++.-.++
T Consensus 21 G~~~v~~aik~---gk~~lVI~A~D~s~~~kkki~~~~~~~~--vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~ 95 (104)
T PRK05583 21 GYNKCEEAIKK---KKVYLIIISNDISENSKNKFKNYCNKYN--IPYIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLL 95 (104)
T ss_pred cHHHHHHHHHc---CCceEEEEeCCCCHhHHHHHHHHHHHcC--CCEEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHH
Confidence 67777777765 4678776654 55667778888877655 433444677777544444333333333334444443
Q ss_pred H
Q 007873 495 H 495 (586)
Q Consensus 495 E 495 (586)
+
T Consensus 96 ~ 96 (104)
T PRK05583 96 K 96 (104)
T ss_pred H
Confidence 3
No 411
>PRK00153 hypothetical protein; Validated
Probab=22.43 E-value=2.4e+02 Score=23.87 Aligned_cols=51 Identities=24% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 GTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+-+-.++.+|+..++-+|.. -+. +..+|.+.+++.|++.|.+.|..++++
T Consensus 28 ~~~~~~~s~~G~V~V~v~G~~-~v~-~i~Id~~ll~~~d~e~LedlI~~A~n~ 78 (104)
T PRK00153 28 QMEVEGEAGGGLVKVTMTGKK-EVK-RVKIDPSLVDPEDVEMLEDLILAAFND 78 (104)
T ss_pred ccEEEEEECCCeEEEEEecCc-eEE-EEEECHHHcCCcCHHHHHHHHHHHHHH
Confidence 444556667888888877643 332 455666777889999999999999886
No 412
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.39 E-value=2.6e+02 Score=24.25 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=20.1
Q ss_pred EEEEEecCc-cccCHHHHHHHHhhcccCCeEEEEEeCCCh
Q 007873 404 VIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKK 442 (586)
Q Consensus 404 ~i~~iGrl~-~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~ 442 (586)
.|+..+... .......+++.+++...+++.+++.|..++
T Consensus 53 ~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~ 92 (122)
T cd02071 53 VIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP 92 (122)
T ss_pred EEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 444444433 333345556665554224677777666553
No 413
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.32 E-value=1.3e+02 Score=30.22 Aligned_cols=75 Identities=13% Similarity=-0.040 Sum_probs=47.9
Q ss_pred ceEEEeccChHHHHHHHHhccEEEEcCCC--C--CCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccC
Q 007873 458 KARGVAKFNIPLAHMIIAGADFILIPSRF--E--PCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEA 533 (586)
Q Consensus 458 ~v~~~~~~~~~~~~~~l~~aDi~l~PS~~--E--~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~ 533 (586)
-+...+.|+.+.-..+++...+=++-+.. + ++--++--|+.+|+|||.-+.+-...- +-
T Consensus 177 iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~------~~----------- 239 (256)
T TIGR00715 177 IIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPG------VA----------- 239 (256)
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCC------Cc-----------
Confidence 46677778777766777755443333332 2 455678888999999999887643211 01
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007873 534 VDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 534 v~~~d~~~la~~I~~ll 550 (586)
...+++++.+.+.+++
T Consensus 240 -~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 240 -IFDDISQLNQFVARLL 255 (256)
T ss_pred -cCCCHHHHHHHHHHhc
Confidence 2267888887777654
No 414
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=22.25 E-value=1.4e+02 Score=30.34 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=30.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|++|||+++..-..|- .--.-......+++|.+.||+|..+-.
T Consensus 1 ~~~~~i~vl~gg~s~e--~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPE--REVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCc--hHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 4578999997643332 333334667799999999999988743
No 415
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.19 E-value=80 Score=24.95 Aligned_cols=24 Identities=33% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHhhhhHHHHHhCCCeEEEEEec
Q 007873 104 GDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 104 ~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|..--++|..|++.|.+|+++...
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CHHHHHHHHHHHHhCcEEEEEecc
Confidence 335667999999999999999876
No 416
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=22.07 E-value=95 Score=29.98 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=22.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||.++|+.- .||+| ..+++.|+++||+|.++..+
T Consensus 1 ~~~~lItGa------~g~iG---~~l~~~l~~~g~~v~~~~~~ 34 (247)
T PRK09730 1 MAIALVTGG------SRGIG---RATALLLAQEGYTVAVNYQQ 34 (247)
T ss_pred CCEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 555555532 34444 55888999999999876543
No 417
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=22.07 E-value=1.5e+02 Score=28.41 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=33.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+.|+.. |.+ .|-....+...++.+.+.|.+|.++.-.
T Consensus 1 mki~~I~gs--~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~ 40 (207)
T COG0655 1 MKILGINGS--PRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLP 40 (207)
T ss_pred CeeeEEEec--CCC-CCcHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 788888875 433 7888888888999999999999999765
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.91 E-value=1e+03 Score=25.91 Aligned_cols=82 Identities=7% Similarity=0.064 Sum_probs=47.9
Q ss_pred CcHHHHHHHHcCCcEEEcCCcCccccccc----CcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007873 489 CGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 564 (586)
Q Consensus 489 ~gl~~lEAma~G~PvI~s~~gg~~e~v~~----g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~ 564 (586)
.|.++--+.+.|+|+....+|--.+=+.. .....+. --+|+..|.+.+.+.++. +..+++.+.
T Consensus 255 ~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iL----------g~gD~~~l~e~~~~~~~~---~~~~~~~~~ 321 (428)
T TIGR00959 255 GGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRIL----------GMGDILSLVEKAQEVVDE---EEAKKLAEK 321 (428)
T ss_pred ccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHh----------CCCChHHHHHHHHHhhCH---HHHHHHHHH
Confidence 55555556678999988777643221111 1111111 345666666666665542 334455555
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 007873 565 GMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 565 ~~~~~fsw~~~a~~~~~~~ 583 (586)
-+.-.|+.+.+.+++.+..
T Consensus 322 ~~~~~f~l~d~~~q~~~~~ 340 (428)
T TIGR00959 322 MKKGQFDLEDFLEQLRQIK 340 (428)
T ss_pred HHhCCCCHHHHHHHHHHHH
Confidence 5567899999999988754
No 419
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=21.89 E-value=1.2e+02 Score=33.25 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.2
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
..|--..+..+++.|+++||+|+++++..
T Consensus 15 ~~sH~~~~~~la~~L~~~gh~vt~~~~~~ 43 (496)
T KOG1192|consen 15 GQSHLNPMLQLAKRLAERGHNVTVVTPSF 43 (496)
T ss_pred cccHHHHHHHHHHHHHHcCCceEEEEeec
Confidence 35666789999999999999999999874
No 420
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.86 E-value=1.6e+02 Score=28.10 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=27.8
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHh-CCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~-~Gh~V~vvt~~ 127 (586)
.||++.|+..- ..-|-.+...+||.+|++ .|++|.++=..
T Consensus 34 ~~~vi~v~s~k----gG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSL----PGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCC----CCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46766665431 134566678899999997 69999999544
No 421
>PLN03007 UDP-glucosyltransferase family protein
Probab=21.66 E-value=1.2e+02 Score=33.36 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=29.7
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+++|+++.. |- -|--.=+.+|++.|+.+|++|++++..
T Consensus 5 ~~hVvlvp~---pa---~GHi~P~L~LAk~L~~rG~~VT~vtt~ 42 (482)
T PLN03007 5 KLHILFFPF---MA---HGHMIPTLDMAKLFSSRGAKSTILTTP 42 (482)
T ss_pred CcEEEEECC---Cc---cccHHHHHHHHHHHHhCCCEEEEEECC
Confidence 458888873 42 344557889999999999999999976
No 422
>PRK06182 short chain dehydrogenase; Validated
Probab=21.63 E-value=1.4e+02 Score=29.49 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=19.1
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+||+|. .+++.|.++||+|.++..+
T Consensus 12 sggiG~---~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 12 SSGIGK---ATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 466653 4888899999999888654
No 423
>PRK07538 hypothetical protein; Provisional
Probab=21.62 E-value=82 Score=33.70 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=24.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|+|++|+.- .+|+. +|.+|+++|++|.|+=.
T Consensus 1 ~dV~IVGaG------~aGl~-----~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 1 MKVLIAGGG------IGGLT-----LALTLHQRGIEVVVFEA 31 (413)
T ss_pred CeEEEECCC------HHHHH-----HHHHHHhCCCcEEEEEc
Confidence 788998863 35665 77889999999999954
No 424
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.59 E-value=3.4e+02 Score=22.53 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=44.1
Q ss_pred EEEEeCCC--hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHH--HHHcCCcEEEcCC
Q 007873 434 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH--AMRYGTVPIVAST 508 (586)
Q Consensus 434 lvIvG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lE--Ama~G~PvI~s~~ 508 (586)
++++|.|- ..+.+.+++...+.+-.+. ....+..+.......+|++++....- +-..-++ +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~-v~~~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAE-IEAVPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceE-EEEecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcCh
Confidence 57888875 3355677777777663322 22334445556778899988876532 2333344 3457889887763
No 425
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.56 E-value=5.6e+02 Score=25.91 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=59.0
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF 465 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~ 465 (586)
.+++.++||-. ....+.|.-++. ...+..+.-+..|.. |+++.+|+-.+.+.....++++.++.|+ +......
T Consensus 22 Ae~l~~~Yg~~---~I~h~tyPdnf~--~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpD-Il~ia~~ 95 (275)
T PF12683_consen 22 AEELIKKYGDV---MIKHVTYPDNFM--SEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPD-ILLIAGE 95 (275)
T ss_dssp HHHHHHHHHHH---EEEEEE--TTGG--GCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TT-SEEEESS
T ss_pred HHHHHHHhCcc---eEEEEeCCCccc--chHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCC-eEEEcCC
Confidence 45566677632 123344554444 348888888887766 8999999888777778888888888886 5555555
Q ss_pred ChHHHHHHHHhccEEEEcCCCCCCcHH
Q 007873 466 NIPLAHMIIAGADFILIPSRFEPCGLI 492 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~PS~~E~~gl~ 492 (586)
..+....+-..+|+.+.+.. ...|..
T Consensus 96 ~~EDp~~i~~~aDi~~~~D~-~~~G~~ 121 (275)
T PF12683_consen 96 PHEDPEVISSAADIVVNPDE-ISRGYT 121 (275)
T ss_dssp --S-HHHHHHHSSEEEE--H-HHHHHH
T ss_pred CcCCHHHHhhccCeEeccch-hhccHH
Confidence 55566668888999998543 334433
No 426
>PLN02208 glycosyltransferase family protein
Probab=21.49 E-value=1.4e+02 Score=32.63 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.+.+|+++.. | .-|--.-+.+||+.|+.+||+|+++++.
T Consensus 3 ~~~hvv~~P~---p---aqGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 3 PKFHAFMFPW---F---AFGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CCCEEEEecC---c---cccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3567777752 3 2455568889999999999999999964
No 427
>PRK00170 azoreductase; Reviewed
Probab=21.40 E-value=1.5e+02 Score=28.00 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=27.6
Q ss_pred ceEEEEeccccCccccchHH-HHhhhhHHHHHhC--CCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLG-DVLGGLPPALAAN--GHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~-~~~~~L~~~L~~~--Gh~V~vvt~ 126 (586)
|||++|... |. +.+|.. ..+..+.+.|.++ ||+|.++-.
T Consensus 2 mkil~i~gS--pr-~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 2 SKVLVIKSS--IL-GDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CeEEEEecC--CC-CCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 899999875 53 343544 4555677788888 999988854
No 428
>PRK05568 flavodoxin; Provisional
Probab=21.28 E-value=1.6e+02 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|.+...+..+++.+.+.|++|.++-..
T Consensus 12 ~GnT~~~a~~i~~~~~~~g~~v~~~~~~ 39 (142)
T PRK05568 12 TGNTEAMANLIAEGAKENGAEVKLLNVS 39 (142)
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 6999999999999999999999988543
No 429
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=21.28 E-value=1.4e+02 Score=30.61 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=27.3
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
+.+.+||++. ||.|-+-..|+..|..+||+|.++=
T Consensus 24 p~~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~D 58 (350)
T KOG1429|consen 24 PSQNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALD 58 (350)
T ss_pred CCCCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEe
Confidence 4456888875 4556566779999999999999883
No 430
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=21.09 E-value=1.2e+02 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=23.6
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|++++.+. .+|+| ..+++.|+++|++|.++..+
T Consensus 1 m~vlItGa-------s~gIG---~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 1 MNVLVTAS-------SRGIG---FNVARELLKKGARVVISSRN 33 (259)
T ss_pred CeEEEEcC-------CcHHH---HHHHHHHHHcCCEEEEEeCC
Confidence 56666664 35554 45889999999998887644
No 431
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=21.06 E-value=3.9e+02 Score=25.69 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=52.4
Q ss_pred ccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCce---EEEecc-ChHHHHHHHHhccEEEEcCCCCC
Q 007873 414 QKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKA---RGVAKF-NIPLAHMIIAGADFILIPSRFEP 488 (586)
Q Consensus 414 ~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v---~~~~~~-~~~~~~~~l~~aDi~l~PS~~E~ 488 (586)
.|=...|.+|+.-+.+ ..=.++++|+.+. ....+++.+...+... ++.+.. ..... .-+..=|++++..- -.
T Consensus 43 ~kT~~~L~~A~~~i~~i~~~~ILfVgtk~~-~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~dp-~~ 119 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIEPEDILVVSARIY-GQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTDP-RA 119 (196)
T ss_pred HHHHHHHHHHHHHHHHhhCCeEEEEecCHH-HHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEECC-cc
Confidence 3444445555444433 3557888887653 3445666666655322 222222 11111 12334455555332 23
Q ss_pred CcHHHHHHHHcCCcEEEc-CCcCccccc
Q 007873 489 CGLIQLHAMRYGTVPIVA-STGGLVDTV 515 (586)
Q Consensus 489 ~gl~~lEAma~G~PvI~s-~~gg~~e~v 515 (586)
-..++.||...|+|+|+- |+-.-++.|
T Consensus 120 ~~~Av~EA~~l~IP~Iai~DTn~dp~~v 147 (196)
T TIGR01012 120 DHQALKEASEVGIPIVALCDTDNPLRYV 147 (196)
T ss_pred ccHHHHHHHHcCCCEEEEeeCCCCCccC
Confidence 467899999999999886 444444443
No 432
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=20.98 E-value=3.8e+02 Score=26.54 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHcCCcEEEcCCcCccc------ccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcC-HHHHHH
Q 007873 488 PCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAE 560 (586)
Q Consensus 488 ~~gl~~lEAma~G~PvI~s~~gg~~e------~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~-~~~~~~ 560 (586)
++-++..=+..-.+|||....||..- +.+-|..|..+|+= .+...||+.+|.+|.++.++|+ ++...+
T Consensus 194 p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSG-----IFKS~~P~~~A~AIV~A~~~yddp~~lae 268 (296)
T COG0214 194 PYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSG-----IFKSSNPEKRAKAIVEATTHYDDPEVLAE 268 (296)
T ss_pred hHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEeccc-----ccCCCCHHHHHHHHHHHHHccCCHHHHHH
Confidence 44555555555567888888888653 33446677776632 2388999999999999999875 455566
Q ss_pred HHHH
Q 007873 561 MMKN 564 (586)
Q Consensus 561 ~~~~ 564 (586)
.+++
T Consensus 269 vs~~ 272 (296)
T COG0214 269 VSEG 272 (296)
T ss_pred HHHH
Confidence 5554
No 433
>PRK05884 short chain dehydrogenase; Provisional
Probab=20.80 E-value=1.4e+02 Score=28.76 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=23.6
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||+++.+. .||+| ..+++.|+++|++|.++..+
T Consensus 1 m~vlItGa-------s~giG---~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 1 VEVLVTGG-------DTDLG---RTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred CeEEEEeC-------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 56665553 35555 55888999999999988654
No 434
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=20.70 E-value=2e+02 Score=31.08 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=33.6
Q ss_pred HHHHHHHhccEEEE--cCCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 469 LAHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 469 ~~~~~l~~aDi~l~--PS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
.+.++++.||++++ |..-|+ ++-..+..|--|.-+|-+..|++.|
T Consensus 196 ~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 196 SLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVD 245 (409)
T ss_pred CHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccC
Confidence 35679999999865 444344 4555888888899899998888765
No 435
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=20.67 E-value=2.8e+02 Score=27.81 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=42.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg 510 (586)
+++++.+-+.. .+..+++...++ .. .+. ...+++..+|+++..+..+...-...+++..|+.+++.+.|.
T Consensus 26 ~~elv~v~d~~---~~~a~~~a~~~~--~~---~~~--~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gA 95 (265)
T PRK13304 26 NAELYAFYDRN---LEKAENLASKTG--AK---ACL--SIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGA 95 (265)
T ss_pred CeEEEEEECCC---HHHHHHHHHhcC--Ce---eEC--CHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHH
Confidence 56666544443 233444444443 21 122 123345889999987655544445667888999999987765
Q ss_pred cc
Q 007873 511 LV 512 (586)
Q Consensus 511 ~~ 512 (586)
+.
T Consensus 96 l~ 97 (265)
T PRK13304 96 LA 97 (265)
T ss_pred hc
Confidence 43
No 436
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=20.42 E-value=1.2e+02 Score=29.95 Aligned_cols=28 Identities=39% Similarity=0.531 Sum_probs=22.3
Q ss_pred cchHHH--HhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~--~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||.|. .+..||.+|+++|-.|.+|=..
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaD 39 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDAD 39 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 466654 6777999999999999999544
No 437
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=20.36 E-value=1.6e+02 Score=27.48 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
++|-|++.+. | ..|-++.+..|++.|...|++|.++.
T Consensus 2 ~g~~IvieG~---~---GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 2 RGMFIVIEGI---D---GAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred CceEEEEECC---C---CCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4565666653 3 68999999999999999999987654
No 438
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.21 E-value=1.1e+02 Score=30.01 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=27.6
Q ss_pred eEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEec
Q 007873 86 NILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|+.|++- .||+|. ...+|..+||++|+.|.++-..
T Consensus 3 ~iIVvTSG------KGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSG------KGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecC------CCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 56666653 577765 5677999999999999999654
Done!