Query 007873
Match_columns 586
No_of_seqs 249 out of 3312
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:37:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 6.8E-78 2.3E-82 665.1 50.3 502 83-584 8-509 (536)
2 2qzs_A Glycogen synthase; glyc 100.0 9.6E-50 3.3E-54 435.2 44.8 455 85-583 1-473 (485)
3 1rzu_A Glycogen synthase 1; gl 100.0 1.1E-49 3.7E-54 434.8 42.6 454 85-583 1-472 (485)
4 3fro_A GLGA glycogen synthase; 100.0 4.6E-47 1.6E-51 406.4 42.8 419 83-584 1-428 (439)
5 3c48_A Predicted glycosyltrans 100.0 2.7E-41 9.4E-46 362.9 38.0 396 73-583 9-422 (438)
6 3okp_A GDP-mannose-dependent a 100.0 3.8E-40 1.3E-44 347.9 35.0 360 82-583 2-376 (394)
7 2r60_A Glycosyl transferase, g 100.0 7.5E-40 2.6E-44 358.6 37.1 400 84-583 7-456 (499)
8 3s28_A Sucrose synthase 1; gly 100.0 9.3E-40 3.2E-44 372.7 29.8 422 84-583 278-766 (816)
9 2jjm_A Glycosyl transferase, g 100.0 3.3E-38 1.1E-42 334.6 34.3 363 84-583 13-382 (394)
10 2x6q_A Trehalose-synthase TRET 100.0 1.9E-37 6.5E-42 331.1 33.8 359 82-584 38-412 (416)
11 2iw1_A Lipopolysaccharide core 100.0 1.2E-38 4E-43 334.4 22.0 358 85-583 1-368 (374)
12 2gek_A Phosphatidylinositol ma 100.0 5E-37 1.7E-41 325.6 32.9 357 82-583 18-380 (406)
13 3oy2_A Glycosyltransferase B73 100.0 9E-37 3.1E-41 325.4 30.7 351 85-584 1-388 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 4.7E-37 1.6E-41 319.4 24.3 309 82-583 1-332 (342)
15 3nb0_A Glycogen [starch] synth 100.0 9.1E-37 3.1E-41 333.9 23.0 437 89-584 32-631 (725)
16 2x0d_A WSAF; GT4 family, trans 100.0 3.4E-33 1.2E-37 299.0 18.4 351 80-581 42-405 (413)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 3.3E-29 1.1E-33 262.1 28.3 334 84-583 6-354 (364)
18 2hy7_A Glucuronosyltransferase 100.0 1.3E-29 4.5E-34 270.6 21.4 196 308-582 170-373 (406)
19 1uqt_A Alpha, alpha-trehalose- 100.0 1.9E-27 6.4E-32 258.5 28.6 290 228-583 124-451 (482)
20 3beo_A UDP-N-acetylglucosamine 100.0 2.5E-27 8.6E-32 248.6 28.2 223 310-584 143-374 (375)
21 1vgv_A UDP-N-acetylglucosamine 100.0 5.9E-27 2E-31 246.7 25.7 226 314-583 139-373 (384)
22 2bfw_A GLGA glycogen synthase; 99.9 1.1E-26 3.7E-31 222.3 21.2 184 352-566 1-193 (200)
23 1l5w_A Maltodextrin phosphoryl 99.9 3.7E-26 1.3E-30 254.0 28.0 355 201-575 273-720 (796)
24 2vsy_A XCC0866; transferase, g 99.9 7.8E-27 2.7E-31 259.3 22.0 204 316-583 328-556 (568)
25 2c4m_A Glycogen phosphorylase; 99.9 3.7E-26 1.3E-30 253.9 24.1 361 201-575 263-709 (796)
26 3t5t_A Putative glycosyltransf 99.9 5.2E-25 1.8E-29 237.2 26.6 289 228-583 150-470 (496)
27 3qhp_A Type 1 capsular polysac 99.9 3E-25 1E-29 206.0 18.2 160 402-578 2-166 (166)
28 2gj4_A Glycogen phosphorylase, 99.9 6.1E-24 2.1E-28 237.0 17.6 329 227-574 320-743 (824)
29 1v4v_A UDP-N-acetylglucosamine 99.9 2.1E-22 7E-27 211.6 24.0 211 314-581 144-363 (376)
30 2f9f_A First mannosyl transfer 99.9 9.7E-22 3.3E-26 184.9 17.7 141 400-553 21-163 (177)
31 2xci_A KDO-transferase, 3-deox 99.9 6.9E-21 2.4E-25 200.9 22.1 199 309-566 146-357 (374)
32 3rhz_A GTF3, nucleotide sugar 99.8 2E-19 6.9E-24 186.6 26.5 247 227-581 74-331 (339)
33 3ot5_A UDP-N-acetylglucosamine 99.8 8.2E-18 2.8E-22 179.0 26.1 218 315-583 168-392 (403)
34 3otg_A CALG1; calicheamicin, T 99.8 1.2E-18 4.1E-23 185.0 19.6 157 402-583 243-407 (412)
35 3dzc_A UDP-N-acetylglucosamine 99.8 5.2E-18 1.8E-22 180.2 23.4 222 314-581 164-392 (396)
36 3s2u_A UDP-N-acetylglucosamine 99.7 6.3E-15 2.1E-19 154.7 30.6 159 403-582 182-354 (365)
37 4fzr_A SSFS6; structural genom 99.7 3E-16 1E-20 166.1 17.4 153 401-581 227-397 (398)
38 2iyf_A OLED, oleandomycin glyc 99.7 2.2E-15 7.5E-20 161.0 23.4 156 401-582 232-397 (430)
39 3tsa_A SPNG, NDP-rhamnosyltran 99.6 1.2E-14 4.1E-19 153.2 18.2 156 402-582 219-386 (391)
40 3oti_A CALG3; calicheamicin, T 99.6 5.4E-14 1.9E-18 148.8 22.0 153 402-583 233-396 (398)
41 3ia7_A CALG4; glycosysltransfe 99.6 3.5E-13 1.2E-17 142.0 24.5 155 401-583 231-397 (402)
42 2p6p_A Glycosyl transferase; X 99.5 8.8E-12 3E-16 130.9 26.6 151 402-581 211-376 (384)
43 3rsc_A CALG2; TDP, enediyne, s 99.5 3.2E-12 1.1E-16 135.7 23.4 155 401-583 247-412 (415)
44 4hwg_A UDP-N-acetylglucosamine 99.5 1.9E-13 6.6E-18 144.2 12.9 190 315-552 145-342 (385)
45 2yjn_A ERYCIII, glycosyltransf 99.3 1.2E-10 3.9E-15 125.0 20.8 153 402-582 268-433 (441)
46 2iya_A OLEI, oleandomycin glyc 99.2 3E-09 1E-13 113.2 26.4 155 401-581 255-418 (424)
47 4amg_A Snogd; transferase, pol 99.1 3.9E-09 1.3E-13 111.0 18.6 153 402-581 238-397 (400)
48 3h4t_A Glycosyltransferase GTF 99.0 3.2E-08 1.1E-12 104.8 24.4 150 402-582 222-380 (404)
49 1ygp_A Yeast glycogen phosphor 98.9 2.7E-07 9.3E-12 102.9 28.0 220 306-527 467-762 (879)
50 2o6l_A UDP-glucuronosyltransfe 98.9 6.2E-09 2.1E-13 96.2 11.8 122 402-552 22-154 (170)
51 1rrv_A Glycosyltransferase GTF 98.8 9.5E-07 3.2E-11 93.6 23.5 134 402-564 238-379 (416)
52 3q3e_A HMW1C-like glycosyltran 98.7 2.3E-07 8E-12 101.7 17.0 156 393-567 432-601 (631)
53 1iir_A Glycosyltransferase GTF 98.1 6.1E-06 2.1E-10 87.3 9.3 133 402-565 239-379 (415)
54 3tov_A Glycosyl transferase fa 97.2 0.036 1.2E-06 56.9 21.2 113 389-509 174-289 (349)
55 4gyw_A UDP-N-acetylglucosamine 97.1 0.014 4.8E-07 66.1 19.1 179 391-583 514-702 (723)
56 1psw_A ADP-heptose LPS heptosy 96.7 0.013 4.6E-07 59.6 13.3 114 386-507 166-287 (348)
57 3hbm_A UDP-sugar hydrolase; PS 96.2 0.022 7.7E-07 56.6 10.9 93 403-507 159-251 (282)
58 3hbf_A Flavonoid 3-O-glucosylt 95.6 0.1 3.5E-06 55.5 13.2 134 403-552 275-414 (454)
59 2c1x_A UDP-glucose flavonoid 3 95.6 0.04 1.4E-06 58.8 10.0 142 402-565 272-422 (456)
60 3l7i_A Teichoic acid biosynthe 95.0 0.25 8.6E-06 55.8 14.8 188 313-552 475-683 (729)
61 2pq6_A UDP-glucuronosyl/UDP-gl 95.0 0.21 7.3E-06 53.4 13.6 142 403-565 297-449 (482)
62 2acv_A Triterpene UDP-glucosyl 91.9 1.3 4.4E-05 47.0 12.8 138 402-551 277-424 (463)
63 2gt1_A Lipopolysaccharide hept 91.2 0.81 2.8E-05 45.8 9.9 139 403-552 180-322 (326)
64 2vch_A Hydroquinone glucosyltr 91.1 1.2 4.3E-05 47.4 11.8 134 402-551 269-428 (480)
65 2jzc_A UDP-N-acetylglucosamine 90.6 0.14 4.9E-06 48.9 3.3 66 468-550 123-197 (224)
66 3jte_A Response regulator rece 83.8 17 0.00058 30.4 12.6 108 432-552 4-123 (143)
67 3kht_A Response regulator; PSI 82.5 21 0.0007 29.9 12.6 111 431-552 5-128 (144)
68 3grc_A Sensor protein, kinase; 82.3 18 0.00061 30.1 12.1 109 431-552 6-127 (140)
69 2zay_A Response regulator rece 81.9 20 0.00067 30.2 12.2 110 430-552 7-128 (147)
70 1k68_A Phytochrome response re 79.3 25 0.00085 28.9 12.3 110 432-552 3-131 (140)
71 1iir_A Glycosyltransferase GTF 79.3 1.6 5.4E-05 45.2 4.8 37 85-127 1-37 (415)
72 3heb_A Response regulator rece 77.8 21 0.00072 30.3 11.1 111 431-552 4-135 (152)
73 3h5i_A Response regulator/sens 77.6 30 0.001 28.8 14.6 109 431-552 5-124 (140)
74 2hy5_A Putative sulfurtransfer 77.5 3.1 0.00011 35.7 5.4 40 85-127 1-41 (130)
75 4gi5_A Quinone reductase; prot 77.3 2.7 9.3E-05 41.4 5.5 42 80-125 18-60 (280)
76 2d1p_A TUSD, hypothetical UPF0 77.2 3.1 0.00011 36.4 5.3 41 84-127 12-53 (140)
77 4e7p_A Response regulator; DNA 76.4 33 0.0011 28.9 12.1 111 431-552 20-140 (150)
78 3cg4_A Response regulator rece 74.1 36 0.0012 28.1 13.4 110 430-552 6-127 (142)
79 3gt7_A Sensor protein; structu 73.8 41 0.0014 28.6 12.1 110 430-552 6-127 (154)
80 3hzh_A Chemotaxis response reg 73.6 26 0.0009 30.0 10.7 109 431-551 36-156 (157)
81 2pln_A HP1043, response regula 73.5 36 0.0012 28.1 11.2 107 430-552 17-133 (137)
82 4b4o_A Epimerase family protei 73.4 2.3 7.8E-05 41.7 3.9 33 85-127 1-33 (298)
83 3to5_A CHEY homolog; alpha(5)b 71.5 30 0.001 29.5 10.2 111 429-551 10-132 (134)
84 3hdg_A Uncharacterized protein 71.5 34 0.0012 28.1 10.6 109 431-552 7-125 (137)
85 1i3c_A Response regulator RCP1 71.3 45 0.0015 28.0 12.6 111 431-552 8-137 (149)
86 3hdv_A Response regulator; PSI 69.4 45 0.0016 27.3 11.2 109 431-552 7-127 (136)
87 2qzj_A Two-component response 69.3 47 0.0016 27.4 11.2 109 431-552 4-121 (136)
88 2qsj_A DNA-binding response re 69.0 39 0.0013 28.5 10.7 111 431-552 3-124 (154)
89 3eul_A Possible nitrate/nitrit 67.9 54 0.0018 27.5 12.2 111 430-552 14-135 (152)
90 3cnb_A DNA-binding response re 67.8 50 0.0017 27.1 11.7 111 431-553 8-131 (143)
91 2pq6_A UDP-glucuronosyl/UDP-gl 67.3 5.2 0.00018 42.4 5.2 40 82-127 6-45 (482)
92 2rdm_A Response regulator rece 66.1 51 0.0018 26.6 12.4 110 431-553 5-124 (132)
93 3ilh_A Two component response 66.0 55 0.0019 27.0 12.6 111 431-552 9-139 (146)
94 3f6c_A Positive transcription 65.4 54 0.0018 26.6 10.7 109 432-552 2-120 (134)
95 3ty2_A 5'-nucleotidase SURE; s 65.2 5 0.00017 38.9 4.1 40 83-130 10-49 (261)
96 2qr3_A Two-component system re 64.6 57 0.0019 26.7 10.6 109 431-552 3-126 (140)
97 3kcn_A Adenylate cyclase homol 64.3 63 0.0022 27.1 13.6 108 431-552 4-123 (151)
98 3e8x_A Putative NAD-dependent 64.0 6 0.0002 37.1 4.5 38 80-127 17-54 (236)
99 1qkk_A DCTD, C4-dicarboxylate 63.6 66 0.0023 27.0 12.2 109 431-552 3-121 (155)
100 3cg0_A Response regulator rece 63.5 60 0.0021 26.5 11.0 111 430-552 8-128 (140)
101 1hdo_A Biliverdin IX beta redu 63.3 7.4 0.00025 35.2 4.9 36 82-127 1-36 (206)
102 3mc3_A DSRE/DSRF-like family p 62.7 11 0.00037 32.4 5.5 41 84-127 15-55 (134)
103 1jx7_A Hypothetical protein YC 60.7 9.2 0.00031 31.5 4.6 40 85-127 2-43 (117)
104 3lua_A Response regulator rece 60.2 33 0.0011 28.4 8.3 109 431-552 4-127 (140)
105 1dbw_A Transcriptional regulat 60.0 66 0.0023 25.8 12.4 109 431-552 3-121 (126)
106 3t6k_A Response regulator rece 59.7 72 0.0025 26.2 12.8 109 431-552 4-124 (136)
107 2hy5_B Intracellular sulfur ox 59.6 8.7 0.0003 33.3 4.3 41 84-127 4-45 (136)
108 3cfy_A Putative LUXO repressor 59.0 75 0.0026 26.1 11.7 107 433-552 6-122 (137)
109 4f3y_A DHPR, dihydrodipicolina 58.8 11 0.00039 36.7 5.5 44 470-513 67-110 (272)
110 3ew7_A LMO0794 protein; Q8Y8U8 58.4 8.3 0.00028 35.3 4.3 33 85-127 1-33 (221)
111 3r0j_A Possible two component 58.0 1.2E+02 0.004 28.1 12.7 110 430-552 22-141 (250)
112 1rcu_A Conserved hypothetical 57.9 1.1E+02 0.0039 27.9 12.8 129 415-549 42-192 (195)
113 3hv2_A Response regulator/HD d 57.8 84 0.0029 26.3 12.9 109 431-552 14-133 (153)
114 3h2s_A Putative NADH-flavin re 57.0 9 0.00031 35.3 4.3 33 85-127 1-33 (224)
115 2qxy_A Response regulator; reg 56.7 81 0.0028 25.9 10.4 108 431-552 4-121 (142)
116 3m6m_D Sensory/regulatory prot 56.7 85 0.0029 26.1 11.7 109 431-552 14-136 (143)
117 1jbe_A Chemotaxis protein CHEY 56.7 75 0.0026 25.5 11.4 109 431-552 4-125 (128)
118 1k66_A Phytochrome response re 56.4 83 0.0028 25.9 11.8 111 431-552 6-138 (149)
119 3lte_A Response regulator; str 56.3 78 0.0027 25.5 10.7 109 431-552 6-125 (132)
120 3kjh_A CO dehydrogenase/acetyl 56.2 8.1 0.00028 36.2 3.9 37 85-127 1-37 (254)
121 3eod_A Protein HNR; response r 55.2 81 0.0028 25.4 11.1 109 431-552 7-126 (130)
122 3rqi_A Response regulator prot 54.4 75 0.0026 27.9 10.1 109 431-552 7-125 (184)
123 2d1p_B TUSC, hypothetical UPF0 54.4 15 0.0005 30.8 4.8 39 86-127 3-41 (119)
124 2vch_A Hydroquinone glucosyltr 54.2 9.8 0.00033 40.3 4.4 40 83-128 5-45 (480)
125 2rjn_A Response regulator rece 54.1 96 0.0033 25.9 12.9 110 430-552 6-126 (154)
126 4dzz_A Plasmid partitioning pr 54.0 9.3 0.00032 34.7 3.8 39 85-127 1-39 (206)
127 3gl9_A Response regulator; bet 53.7 85 0.0029 25.2 12.1 106 433-551 4-121 (122)
128 3h1g_A Chemotaxis protein CHEY 53.6 87 0.003 25.3 12.4 110 431-552 5-127 (129)
129 3n53_A Response regulator rece 52.4 95 0.0033 25.4 12.2 107 432-552 4-122 (140)
130 2j48_A Two-component sensor ki 51.8 46 0.0016 26.0 7.5 105 433-550 3-116 (119)
131 3nhm_A Response regulator; pro 51.5 94 0.0032 25.0 11.8 107 432-552 5-122 (133)
132 3f6p_A Transcriptional regulat 51.2 92 0.0031 24.8 11.1 106 433-551 4-118 (120)
133 2jba_A Phosphate regulon trans 50.7 74 0.0025 25.4 8.8 107 433-552 4-122 (127)
134 1xv5_A AGT, DNA alpha-glucosyl 50.4 1.6E+02 0.0054 27.3 26.6 151 404-566 199-379 (401)
135 2qv0_A Protein MRKE; structura 50.2 1E+02 0.0036 25.2 12.3 111 430-552 8-127 (143)
136 3dqp_A Oxidoreductase YLBE; al 50.1 11 0.00039 34.6 3.7 33 85-127 1-33 (219)
137 3cz5_A Two-component response 50.1 1.1E+02 0.0038 25.5 10.9 110 431-552 5-125 (153)
138 1wcv_1 SOJ, segregation protei 49.9 14 0.00049 35.1 4.5 39 83-127 4-44 (257)
139 2e6c_A 5'-nucleotidase SURE; S 49.9 12 0.00042 35.8 3.9 37 85-129 1-37 (244)
140 3mm4_A Histidine kinase homolo 49.6 1.3E+02 0.0043 27.1 11.0 109 430-552 60-196 (206)
141 2phj_A 5'-nucleotidase SURE; S 49.3 13 0.00044 35.8 3.9 37 85-129 2-38 (251)
142 3nav_A Tryptophan synthase alp 49.1 1.4E+02 0.0049 28.7 11.5 143 402-550 98-262 (271)
143 2a5l_A Trp repressor binding p 48.6 22 0.00074 32.2 5.4 39 84-127 5-43 (200)
144 3luf_A Two-component system re 48.5 1.8E+02 0.006 27.3 14.2 110 430-552 123-245 (259)
145 1ys7_A Transcriptional regulat 48.5 1.5E+02 0.0053 26.6 14.3 109 431-552 7-125 (233)
146 1j9j_A Stationary phase surviV 48.4 13 0.00046 35.6 3.9 37 85-129 1-37 (247)
147 3hly_A Flavodoxin-like domain; 47.7 19 0.00065 31.7 4.7 38 85-127 1-38 (161)
148 3tem_A Ribosyldihydronicotinam 47.6 19 0.00063 34.0 4.8 40 84-127 1-41 (228)
149 4hb9_A Similarities with proba 47.5 12 0.00041 37.8 3.8 30 84-124 1-30 (412)
150 3vnd_A TSA, tryptophan synthas 47.4 1.5E+02 0.0053 28.4 11.5 122 402-529 96-239 (267)
151 3ijp_A DHPR, dihydrodipicolina 47.1 16 0.00055 35.9 4.4 43 470-512 82-124 (288)
152 1mb3_A Cell division response 47.0 1.1E+02 0.0036 24.3 11.4 107 433-552 3-121 (124)
153 4dad_A Putative pilus assembly 46.9 66 0.0023 26.7 8.0 109 431-552 20-141 (146)
154 2pzm_A Putative nucleotide sug 46.6 14 0.00047 36.6 3.9 39 79-127 15-53 (330)
155 1lss_A TRK system potassium up 46.4 21 0.00072 29.8 4.6 34 83-127 3-36 (140)
156 1l5x_A SurviVal protein E; str 45.9 15 0.00051 36.0 3.8 37 85-129 1-37 (280)
157 2z1m_A GDP-D-mannose dehydrata 45.4 16 0.00053 36.1 4.1 36 82-127 1-36 (345)
158 3d7l_A LIN1944 protein; APC893 45.3 16 0.00056 32.9 4.0 34 83-127 2-35 (202)
159 3dhn_A NAD-dependent epimerase 44.8 16 0.00055 33.6 3.9 33 85-127 5-37 (227)
160 2xj4_A MIPZ; replication, cell 44.7 16 0.00054 35.5 4.0 39 85-127 4-42 (286)
161 3gpi_A NAD-dependent epimerase 44.6 18 0.00063 34.7 4.4 35 82-127 1-35 (286)
162 3f6r_A Flavodoxin; FMN binding 44.2 26 0.00089 30.0 4.9 38 85-127 2-39 (148)
163 1ybx_A Conserved hypothetical 44.2 48 0.0016 28.8 6.4 50 501-552 67-116 (143)
164 3bq9_A Predicted rossmann fold 43.3 2.6E+02 0.0089 29.1 12.8 136 401-552 144-332 (460)
165 1p2f_A Response regulator; DRR 43.3 1.1E+02 0.0036 27.6 9.4 106 433-552 4-117 (220)
166 1dz3_A Stage 0 sporulation pro 43.2 1.3E+02 0.0043 24.2 10.9 109 432-552 3-123 (130)
167 1ydg_A Trp repressor binding p 43.1 31 0.001 31.6 5.5 39 84-127 6-44 (211)
168 3ea0_A ATPase, para family; al 43.0 15 0.00052 34.3 3.4 41 83-127 2-43 (245)
169 3i6i_A Putative leucoanthocyan 42.9 18 0.00063 35.9 4.2 36 82-127 8-43 (346)
170 3of5_A Dethiobiotin synthetase 42.9 28 0.00097 32.7 5.3 40 83-126 2-41 (228)
171 2v4n_A Multifunctional protein 42.6 19 0.00067 34.6 4.1 38 84-129 1-38 (254)
172 1kjn_A MTH0777; hypotethical p 42.4 39 0.0013 29.6 5.5 42 81-126 3-44 (157)
173 2b4a_A BH3024; flavodoxin-like 42.0 1.4E+02 0.0047 24.2 11.4 110 430-552 14-131 (138)
174 1f4p_A Flavodoxin; electron tr 41.8 24 0.00083 30.1 4.3 38 85-127 1-38 (147)
175 3n0r_A Response regulator; sig 41.7 2.4E+02 0.0083 27.0 13.4 118 422-552 150-277 (286)
176 3kb6_A D-lactate dehydrogenase 40.6 58 0.002 32.6 7.5 44 470-513 188-236 (334)
177 3pg5_A Uncharacterized protein 40.5 20 0.00069 36.2 4.1 37 85-127 1-39 (361)
178 3nbm_A PTS system, lactose-spe 40.5 46 0.0016 27.4 5.6 43 83-131 5-47 (108)
179 4e38_A Keto-hydroxyglutarate-a 39.9 2.4E+02 0.0083 26.4 11.9 77 473-551 144-228 (232)
180 2x4g_A Nucleoside-diphosphate- 39.8 27 0.00091 34.4 4.8 34 84-127 13-46 (342)
181 1srr_A SPO0F, sporulation resp 39.7 1.4E+02 0.0048 23.6 11.3 107 432-551 4-120 (124)
182 3q9s_A DNA-binding response re 39.7 1.8E+02 0.006 27.0 10.6 108 431-551 37-153 (249)
183 1ka9_F Imidazole glycerol phos 39.6 1.5E+02 0.0053 27.5 10.2 68 475-546 164-242 (252)
184 1a04_A Nitrate/nitrite respons 39.0 2.1E+02 0.0071 25.4 12.7 110 431-552 5-125 (215)
185 2qvg_A Two component response 39.0 1.6E+02 0.0053 24.0 11.1 108 431-551 7-134 (143)
186 2pl1_A Transcriptional regulat 38.7 1.4E+02 0.0048 23.4 12.8 107 433-552 2-118 (121)
187 2ayx_A Sensor kinase protein R 38.2 2.5E+02 0.0085 26.1 12.3 109 431-552 129-247 (254)
188 2zki_A 199AA long hypothetical 38.2 31 0.0011 31.1 4.6 38 84-127 4-41 (199)
189 3crn_A Response regulator rece 37.7 1.6E+02 0.0054 23.7 12.7 108 432-552 4-121 (132)
190 3q9l_A Septum site-determining 37.7 25 0.00084 33.1 4.0 39 85-127 2-40 (260)
191 3qvo_A NMRA family protein; st 37.5 21 0.00071 33.3 3.4 25 100-127 32-57 (236)
192 2ph1_A Nucleotide-binding prot 37.3 27 0.00092 33.3 4.2 37 85-127 18-56 (262)
193 4g65_A TRK system potassium up 37.3 13 0.00045 39.2 2.1 133 404-552 211-367 (461)
194 2hun_A 336AA long hypothetical 37.2 23 0.00077 34.8 3.8 36 82-127 1-38 (336)
195 1mvo_A PHOP response regulator 37.1 1.6E+02 0.0055 23.6 12.4 108 432-552 4-121 (136)
196 2b69_A UDP-glucuronate decarbo 36.9 28 0.00096 34.4 4.5 37 81-127 24-60 (343)
197 3ghy_A Ketopantoate reductase 36.9 26 0.0009 34.9 4.2 35 82-127 1-35 (335)
198 2hqr_A Putative transcriptiona 36.6 1.7E+02 0.006 26.1 9.8 103 434-552 3-115 (223)
199 3ruf_A WBGU; rossmann fold, UD 36.5 27 0.00091 34.6 4.2 36 82-127 23-58 (351)
200 3mcu_A Dipicolinate synthase, 36.3 32 0.0011 32.0 4.4 37 83-127 4-42 (207)
201 3auf_A Glycinamide ribonucleot 36.1 49 0.0017 31.2 5.7 35 84-127 22-58 (229)
202 4egb_A DTDP-glucose 4,6-dehydr 35.9 22 0.00074 35.2 3.4 42 75-126 15-56 (346)
203 3b6i_A Flavoprotein WRBA; flav 35.9 40 0.0014 30.2 5.1 38 85-127 2-40 (198)
204 3cu5_A Two component transcrip 35.9 1.8E+02 0.0062 23.8 11.6 108 433-552 4-123 (141)
205 1e6u_A GDP-fucose synthetase; 35.8 19 0.00067 35.0 3.0 35 82-126 1-35 (321)
206 3fgn_A Dethiobiotin synthetase 35.8 47 0.0016 31.7 5.7 41 82-126 23-63 (251)
207 3b2n_A Uncharacterized protein 35.3 1.7E+02 0.006 23.5 12.4 109 432-552 4-123 (133)
208 3lqk_A Dipicolinate synthase s 35.1 29 0.001 32.1 3.9 38 82-127 5-44 (201)
209 1bg6_A N-(1-D-carboxylethyl)-L 34.9 32 0.0011 34.2 4.6 35 82-127 2-36 (359)
210 1p9l_A Dihydrodipicolinate red 34.9 1E+02 0.0035 29.3 7.8 78 433-513 2-82 (245)
211 3qvl_A Putative hydantoin race 34.8 1.5E+02 0.0052 28.0 9.1 39 84-127 1-39 (245)
212 3zq6_A Putative arsenical pump 34.6 31 0.0011 34.2 4.3 42 83-128 11-52 (324)
213 1xhf_A DYE resistance, aerobic 34.2 1.7E+02 0.0058 23.0 12.9 108 432-552 4-120 (123)
214 2bka_A CC3, TAT-interacting pr 34.2 28 0.00096 32.3 3.8 36 82-127 16-53 (242)
215 1rkx_A CDP-glucose-4,6-dehydra 34.2 30 0.001 34.3 4.2 36 82-127 7-42 (357)
216 4id9_A Short-chain dehydrogena 34.1 28 0.00095 34.4 3.9 36 82-127 17-52 (347)
217 3noy_A 4-hydroxy-3-methylbut-2 34.0 1.6E+02 0.0053 29.7 9.1 134 402-550 30-169 (366)
218 2dkn_A 3-alpha-hydroxysteroid 33.9 31 0.0011 32.1 4.0 25 100-127 10-34 (255)
219 2acv_A Triterpene UDP-glucosyl 33.6 25 0.00086 36.8 3.6 39 84-128 9-49 (463)
220 3ko8_A NAD-dependent epimerase 33.5 30 0.001 33.5 4.0 33 85-127 1-33 (312)
221 3slg_A PBGP3 protein; structur 33.3 36 0.0012 34.0 4.6 38 81-128 21-59 (372)
222 2gwr_A DNA-binding response re 33.1 2.8E+02 0.0095 25.1 11.6 108 432-552 6-122 (238)
223 1fjh_A 3alpha-hydroxysteroid d 33.1 33 0.0011 32.2 4.1 34 85-127 1-34 (257)
224 2vzf_A NADH-dependent FMN redu 33.0 43 0.0015 30.3 4.7 40 85-127 3-43 (197)
225 3kto_A Response regulator rece 32.9 1.2E+02 0.0042 24.6 7.4 109 431-552 6-126 (136)
226 1qo0_D AMIR; binding protein, 32.8 1.8E+02 0.0063 25.4 9.1 106 431-552 12-125 (196)
227 2gkg_A Response regulator homo 32.5 1.8E+02 0.0061 22.8 10.4 107 432-552 6-125 (127)
228 2q62_A ARSH; alpha/beta, flavo 32.5 49 0.0017 31.6 5.1 41 83-126 33-73 (247)
229 1y1p_A ARII, aldehyde reductas 32.2 40 0.0014 32.9 4.7 36 82-127 9-44 (342)
230 3eag_A UDP-N-acetylmuramate:L- 32.0 39 0.0013 33.5 4.6 32 84-125 4-35 (326)
231 3bfv_A CAPA1, CAPB2, membrane 31.8 51 0.0017 31.7 5.2 41 83-127 80-120 (271)
232 1fy2_A Aspartyl dipeptidase; s 31.4 88 0.003 29.3 6.7 91 417-510 17-123 (229)
233 1cyd_A Carbonyl reductase; sho 31.4 47 0.0016 30.8 4.8 36 82-127 5-40 (244)
234 2lpm_A Two-component response 31.3 1E+02 0.0034 25.7 6.4 109 430-550 7-120 (123)
235 1yio_A Response regulatory pro 31.2 2.7E+02 0.0092 24.4 13.7 109 431-552 4-122 (208)
236 1xq6_A Unknown protein; struct 31.2 47 0.0016 30.7 4.8 35 83-127 3-39 (253)
237 1sb8_A WBPP; epimerase, 4-epim 31.0 37 0.0013 33.6 4.2 35 83-127 26-60 (352)
238 3kyj_B CHEY6 protein, putative 30.9 1.9E+02 0.0066 23.6 8.4 104 431-546 13-129 (145)
239 3k9g_A PF-32 protein; ssgcid, 30.9 27 0.00094 33.2 3.1 38 83-127 25-64 (267)
240 3k96_A Glycerol-3-phosphate de 30.1 40 0.0014 34.1 4.3 35 82-127 27-61 (356)
241 1zgz_A Torcad operon transcrip 30.0 2E+02 0.0068 22.5 12.7 108 432-552 3-119 (122)
242 2ixd_A LMBE-related protein; h 29.9 59 0.002 30.8 5.2 41 82-128 1-41 (242)
243 3snk_A Response regulator CHEY 29.6 43 0.0015 27.5 3.8 109 431-552 14-133 (135)
244 2nzw_A Alpha1,3-fucosyltransfe 29.6 67 0.0023 32.7 5.8 79 472-562 227-308 (371)
245 2yq5_A D-isomer specific 2-hyd 29.6 4.3E+02 0.015 26.2 12.0 111 433-552 3-117 (343)
246 3guy_A Short-chain dehydrogena 29.5 34 0.0011 31.7 3.4 34 85-127 1-34 (230)
247 1sqs_A Conserved hypothetical 29.5 50 0.0017 31.0 4.7 40 85-127 2-42 (242)
248 3c1o_A Eugenol synthase; pheny 29.5 37 0.0013 33.1 3.8 34 84-127 4-37 (321)
249 1geq_A Tryptophan synthase alp 29.4 1.5E+02 0.0053 27.5 8.2 122 403-527 82-222 (248)
250 3t8y_A CHEB, chemotaxis respon 29.2 2.6E+02 0.0088 23.6 12.7 111 430-552 24-155 (164)
251 3i42_A Response regulator rece 29.1 2.1E+02 0.0072 22.5 12.8 109 431-552 3-122 (127)
252 2afh_E Nitrogenase iron protei 29.1 54 0.0019 31.5 4.9 39 84-127 1-39 (289)
253 2p5y_A UDP-glucose 4-epimerase 28.8 40 0.0014 32.6 3.9 32 85-126 1-32 (311)
254 3sxp_A ADP-L-glycero-D-mannohe 28.6 48 0.0017 32.9 4.6 36 82-127 8-45 (362)
255 2vo1_A CTP synthase 1; pyrimid 28.4 73 0.0025 30.9 5.4 44 81-127 19-62 (295)
256 2vvp_A Ribose-5-phosphate isom 28.4 51 0.0017 29.3 4.1 37 82-126 1-37 (162)
257 2ew2_A 2-dehydropantoate 2-red 28.4 43 0.0015 32.4 4.1 33 84-127 3-35 (316)
258 1xgk_A Nitrogen metabolite rep 28.4 47 0.0016 33.2 4.5 35 83-127 4-38 (352)
259 1vzw_A Phosphoribosyl isomeras 28.3 2.8E+02 0.0096 25.6 9.8 63 476-544 159-237 (244)
260 3ug7_A Arsenical pump-driving 28.2 46 0.0016 33.4 4.3 26 102-127 38-63 (349)
261 2r85_A PURP protein PF1517; AT 28.1 38 0.0013 33.2 3.7 32 84-127 2-33 (334)
262 3fni_A Putative diflavin flavo 28.0 82 0.0028 27.5 5.5 39 84-127 4-42 (159)
263 2y88_A Phosphoribosyl isomeras 28.0 1.3E+02 0.0043 28.0 7.3 70 471-544 156-240 (244)
264 1t0i_A YLR011WP; FMN binding p 28.0 68 0.0023 28.6 5.1 40 85-127 1-46 (191)
265 1ooe_A Dihydropteridine reduct 27.6 47 0.0016 30.8 4.0 25 100-127 12-36 (236)
266 1gy8_A UDP-galactose 4-epimera 27.5 52 0.0018 33.1 4.7 34 84-127 2-36 (397)
267 3l4b_C TRKA K+ channel protien 27.5 51 0.0017 30.2 4.3 32 85-127 1-32 (218)
268 2yw3_A 4-hydroxy-2-oxoglutarat 27.5 3.4E+02 0.012 24.6 10.0 109 431-552 83-200 (207)
269 2gk4_A Conserved hypothetical 27.3 48 0.0016 31.4 4.0 25 100-127 28-52 (232)
270 1thf_D HISF protein; thermophI 27.3 2.6E+02 0.0088 25.9 9.4 72 471-546 158-241 (253)
271 3dfu_A Uncharacterized protein 27.1 42 0.0014 31.8 3.5 33 83-126 5-37 (232)
272 1d4a_A DT-diaphorase, quinone 27.1 70 0.0024 30.8 5.3 39 85-127 3-42 (273)
273 3gd5_A Otcase, ornithine carba 27.1 1.9E+02 0.0065 28.7 8.5 103 353-485 128-234 (323)
274 1t5b_A Acyl carrier protein ph 27.0 64 0.0022 28.9 4.8 41 85-127 2-44 (201)
275 1p6q_A CHEY2; chemotaxis, sign 27.0 2.3E+02 0.008 22.3 11.6 109 431-551 6-126 (129)
276 4hs4_A Chromate reductase; tri 26.9 32 0.0011 31.5 2.6 39 82-124 4-43 (199)
277 2pi1_A D-lactate dehydrogenase 26.6 2E+02 0.0068 28.5 8.7 44 470-513 188-236 (334)
278 1w25_A Stalked-cell differenti 26.4 5.1E+02 0.018 26.1 14.7 107 433-552 3-121 (459)
279 2fzv_A Putative arsenical resi 26.3 73 0.0025 31.0 5.2 42 82-127 56-98 (279)
280 3fkq_A NTRC-like two-domain pr 26.3 42 0.0014 34.0 3.6 41 83-127 141-181 (373)
281 3q0i_A Methionyl-tRNA formyltr 26.3 56 0.0019 32.4 4.5 35 82-127 5-39 (318)
282 2a35_A Hypothetical protein PA 26.2 43 0.0015 30.2 3.4 34 84-127 5-40 (215)
283 2r25_B Osmosensing histidine p 26.2 2.5E+02 0.0087 22.5 11.3 109 432-552 3-127 (133)
284 2gas_A Isoflavone reductase; N 26.2 41 0.0014 32.4 3.4 34 84-127 2-35 (307)
285 3klo_A Transcriptional regulat 26.2 2E+02 0.0067 26.0 8.2 110 431-552 7-129 (225)
286 2r6j_A Eugenol synthase 1; phe 26.1 46 0.0016 32.3 3.8 32 86-127 13-44 (318)
287 3dfz_A SIRC, precorrin-2 dehyd 26.0 2.2E+02 0.0074 26.5 8.3 117 420-552 43-163 (223)
288 3oh8_A Nucleoside-diphosphate 25.6 49 0.0017 35.1 4.2 34 84-127 147-180 (516)
289 4huj_A Uncharacterized protein 25.6 53 0.0018 30.3 4.0 35 82-127 21-55 (220)
290 2bi7_A UDP-galactopyranose mut 25.3 48 0.0016 33.6 3.9 35 82-127 1-35 (384)
291 2ark_A Flavodoxin; FMN, struct 25.2 67 0.0023 28.7 4.5 38 85-127 5-43 (188)
292 3l77_A Short-chain alcohol deh 25.2 54 0.0019 30.2 4.0 34 85-127 2-35 (235)
293 1ks9_A KPA reductase;, 2-dehyd 25.1 57 0.002 31.1 4.3 32 85-127 1-32 (291)
294 2oqr_A Sensory transduction pr 25.1 2.8E+02 0.0096 24.8 9.1 108 432-552 5-121 (230)
295 3end_A Light-independent proto 25.0 75 0.0026 30.8 5.2 40 83-127 39-78 (307)
296 3igf_A ALL4481 protein; two-do 25.0 73 0.0025 32.4 5.1 35 85-126 2-38 (374)
297 2gdz_A NAD+-dependent 15-hydro 25.0 61 0.0021 30.7 4.4 25 100-127 16-40 (267)
298 3dtt_A NADP oxidoreductase; st 24.9 67 0.0023 30.2 4.6 36 81-127 16-51 (245)
299 2ywr_A Phosphoribosylglycinami 24.9 1.4E+02 0.0048 27.6 6.7 34 85-127 2-37 (216)
300 3cio_A ETK, tyrosine-protein k 24.7 77 0.0026 30.9 5.2 41 83-127 102-142 (299)
301 1e2b_A Enzyme IIB-cellobiose; 24.7 1.2E+02 0.0042 24.5 5.6 44 82-131 1-44 (106)
302 1oc2_A DTDP-glucose 4,6-dehydr 24.7 45 0.0015 32.8 3.5 25 100-127 13-39 (348)
303 1o5i_A 3-oxoacyl-(acyl carrier 24.6 73 0.0025 29.8 4.9 37 81-127 16-52 (249)
304 1dcf_A ETR1 protein; beta-alph 24.6 2.7E+02 0.0092 22.2 11.8 109 431-552 7-129 (136)
305 1ja9_A 4HNR, 1,3,6,8-tetrahydr 24.5 51 0.0017 31.1 3.7 24 100-126 30-53 (274)
306 3lcm_A SMU.1420, putative oxid 24.5 61 0.0021 29.4 4.1 38 85-127 1-39 (196)
307 3r6w_A FMN-dependent NADH-azor 24.2 66 0.0023 29.4 4.3 40 85-127 2-44 (212)
308 1kgs_A DRRD, DNA binding respo 24.1 3.8E+02 0.013 23.7 13.5 108 432-552 3-120 (225)
309 4e3z_A Putative oxidoreductase 23.9 56 0.0019 31.0 3.9 37 82-127 23-59 (272)
310 1cp2_A CP2, nitrogenase iron p 23.9 71 0.0024 30.1 4.6 38 85-127 1-38 (269)
311 1bvy_F Protein (cytochrome P45 23.9 64 0.0022 29.3 4.1 39 84-127 21-59 (191)
312 2x6t_A ADP-L-glycero-D-manno-h 23.9 54 0.0019 32.4 3.9 36 82-127 44-80 (357)
313 3qxc_A Dethiobiotin synthetase 23.8 89 0.0031 29.6 5.2 39 84-126 20-58 (242)
314 1zh2_A KDP operon transcriptio 23.8 2.5E+02 0.0087 21.6 10.6 107 433-552 3-118 (121)
315 2i6u_A Otcase, ornithine carba 23.8 3.4E+02 0.012 26.6 9.6 127 316-485 94-226 (307)
316 3enk_A UDP-glucose 4-epimerase 23.8 58 0.002 31.8 4.1 34 84-127 5-38 (341)
317 3i83_A 2-dehydropantoate 2-red 23.6 64 0.0022 31.7 4.3 33 84-127 2-34 (320)
318 3r6d_A NAD-dependent epimerase 23.5 64 0.0022 29.3 4.1 25 100-127 14-39 (221)
319 3ego_A Probable 2-dehydropanto 23.2 64 0.0022 31.6 4.3 32 84-127 2-33 (307)
320 2pk3_A GDP-6-deoxy-D-LYXO-4-he 23.2 60 0.0021 31.4 4.0 25 100-127 21-45 (321)
321 1qyc_A Phenylcoumaran benzylic 23.1 39 0.0013 32.6 2.6 34 84-127 4-37 (308)
322 3en0_A Cyanophycinase; serine 23.0 4.1E+02 0.014 25.7 10.0 108 403-510 27-155 (291)
323 2bgk_A Rhizome secoisolaricire 22.8 82 0.0028 29.7 4.9 25 100-127 25-49 (278)
324 1wa3_A 2-keto-3-deoxy-6-phosph 22.7 4.1E+02 0.014 23.6 11.4 38 490-527 137-180 (205)
325 2q1s_A Putative nucleotide sug 22.7 64 0.0022 32.3 4.2 34 84-127 32-66 (377)
326 3oet_A Erythronate-4-phosphate 22.6 2.5E+02 0.0086 28.5 8.6 81 431-513 119-216 (381)
327 1g3q_A MIND ATPase, cell divis 22.6 93 0.0032 28.5 5.1 39 85-127 2-40 (237)
328 2fb6_A Conserved hypothetical 22.5 70 0.0024 26.6 3.7 40 84-127 7-48 (117)
329 2hpv_A FMN-dependent NADH-azor 22.5 84 0.0029 28.4 4.7 40 85-126 2-44 (208)
330 2a9o_A Response regulator; ess 22.4 2.7E+02 0.0092 21.4 12.1 107 433-552 3-118 (120)
331 3e48_A Putative nucleoside-dip 22.4 58 0.002 31.0 3.7 33 85-127 1-34 (289)
332 3f2v_A General stress protein 22.4 45 0.0015 30.4 2.7 37 85-126 2-38 (192)
333 1h5q_A NADP-dependent mannitol 22.3 80 0.0027 29.5 4.6 25 100-127 23-47 (265)
334 3gg2_A Sugar dehydrogenase, UD 22.3 55 0.0019 34.2 3.7 33 84-127 2-34 (450)
335 3hwr_A 2-dehydropantoate 2-red 22.3 75 0.0026 31.2 4.6 35 81-127 16-50 (318)
336 4dio_A NAD(P) transhydrogenase 22.2 5.6E+02 0.019 26.1 11.2 48 469-516 268-323 (405)
337 2k6g_A Replication factor C su 22.1 1.3E+02 0.0043 24.7 5.1 10 403-412 36-45 (109)
338 4ep1_A Otcase, ornithine carba 22.0 2.7E+02 0.0093 27.8 8.5 87 386-485 166-256 (340)
339 2hna_A Protein MIOC, flavodoxi 22.0 70 0.0024 27.2 3.8 36 85-125 2-37 (147)
340 1dhr_A Dihydropteridine reduct 21.7 71 0.0024 29.6 4.1 25 100-127 16-40 (241)
341 2vou_A 2,6-dihydroxypyridine h 21.6 68 0.0023 32.3 4.2 34 82-126 3-36 (397)
342 3rpe_A MDAB, modulator of drug 21.6 1E+02 0.0036 28.6 5.1 41 85-127 26-69 (218)
343 1hyq_A MIND, cell division inh 21.5 97 0.0033 29.0 5.0 39 85-127 2-40 (263)
344 2qip_A Protein of unknown func 21.5 1.5E+02 0.0052 25.9 6.0 67 413-482 90-158 (165)
345 3rp8_A Flavoprotein monooxygen 21.5 63 0.0022 32.7 3.9 34 82-126 21-54 (407)
346 3gem_A Short chain dehydrogena 21.4 58 0.002 30.9 3.4 25 100-127 36-60 (260)
347 2w37_A Ornithine carbamoyltran 21.3 3.2E+02 0.011 27.5 8.9 107 349-485 144-254 (359)
348 2r48_A Phosphotransferase syst 21.3 1E+02 0.0036 25.2 4.4 39 84-127 2-42 (106)
349 1orr_A CDP-tyvelose-2-epimeras 21.1 69 0.0024 31.2 4.0 24 100-126 10-33 (347)
350 1id1_A Putative potassium chan 21.0 48 0.0016 28.4 2.5 35 82-127 1-35 (153)
351 3ohs_X Trans-1,2-dihydrobenzen 21.0 2.4E+02 0.0083 27.5 8.1 79 420-507 17-97 (334)
352 1zmt_A Haloalcohol dehalogenas 20.9 37 0.0013 32.0 1.9 34 85-127 1-34 (254)
353 1n7h_A GDP-D-mannose-4,6-dehyd 20.9 71 0.0024 31.9 4.1 25 100-127 37-61 (381)
354 2vns_A Metalloreductase steap3 20.8 87 0.003 28.7 4.4 33 84-127 28-60 (215)
355 2c20_A UDP-glucose 4-epimerase 20.8 71 0.0024 31.0 4.0 24 101-127 11-34 (330)
356 2qyt_A 2-dehydropantoate 2-red 20.8 63 0.0022 31.3 3.6 33 83-126 7-45 (317)
357 3g17_A Similar to 2-dehydropan 20.7 50 0.0017 32.1 2.8 33 84-127 2-34 (294)
358 2i87_A D-alanine-D-alanine lig 20.6 48 0.0016 33.3 2.7 44 82-127 1-44 (364)
359 1tmy_A CHEY protein, TMY; chem 20.6 3E+02 0.01 21.3 11.4 107 432-550 3-119 (120)
360 4ds3_A Phosphoribosylglycinami 20.6 2.2E+02 0.0076 26.2 7.1 37 82-127 5-43 (209)
361 1p9o_A Phosphopantothenoylcyst 20.6 80 0.0027 31.3 4.2 20 108-127 69-88 (313)
362 3fwz_A Inner membrane protein 20.5 49 0.0017 28.0 2.4 33 84-127 7-39 (140)
363 1wma_A Carbonyl reductase [NAD 20.5 69 0.0024 30.0 3.7 35 84-127 3-38 (276)
364 3pp8_A Glyoxylate/hydroxypyruv 20.5 1.5E+02 0.005 29.3 6.2 46 468-513 185-235 (315)
365 3kkl_A Probable chaperone prot 20.4 1E+02 0.0035 29.2 4.9 45 84-128 3-52 (244)
366 3dff_A Teicoplanin pseudoaglyc 20.4 1.2E+02 0.004 29.3 5.4 39 84-128 7-45 (273)
367 1qyd_A Pinoresinol-lariciresin 20.4 47 0.0016 32.0 2.6 34 84-127 4-37 (313)
368 3hn2_A 2-dehydropantoate 2-red 20.4 66 0.0023 31.5 3.7 33 84-127 2-34 (312)
369 1duv_G Octase-1, ornithine tra 20.4 3.3E+02 0.011 27.0 8.8 108 349-485 121-233 (333)
370 3la6_A Tyrosine-protein kinase 20.2 1E+02 0.0035 29.8 5.0 41 83-127 90-130 (286)
371 3c3w_A Two component transcrip 20.2 1.4E+02 0.0049 27.0 5.8 109 432-552 2-121 (225)
372 2o4c_A Erythronate-4-phosphate 20.2 2.8E+02 0.0097 28.0 8.4 44 470-513 161-213 (380)
373 4ekn_B Aspartate carbamoyltran 20.1 2.5E+02 0.0085 27.5 7.7 112 353-490 121-233 (306)
374 2yq5_A D-isomer specific 2-hyd 20.1 2.9E+02 0.0098 27.5 8.3 44 470-513 194-242 (343)
375 1j4a_A D-LDH, D-lactate dehydr 20.1 2.3E+02 0.0079 28.0 7.7 44 470-513 193-241 (333)
376 3dfi_A Pseudoaglycone deacetyl 20.1 1.3E+02 0.0045 28.8 5.7 40 83-128 6-45 (270)
377 4em8_A Ribose 5-phosphate isom 20.0 1.5E+02 0.005 25.9 5.3 38 82-127 5-42 (148)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=6.8e-78 Score=665.09 Aligned_cols=502 Identities=69% Similarity=1.156 Sum_probs=455.3
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCc
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (586)
..||||||++|++|+.|+||++++++.|+++|+++||+|.|++|.|+++.+.++......+.+++....+++++...+|+
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 47999999999999999999999999999999999999999999999998888888888899999999999999999999
Q ss_pred eEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchH
Q 007873 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (586)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~ 242 (586)
+++++++|.++.+.|+.++..+|++..|.||.|+..||.+|+++++++++.+......++.+.+++|+|+|+|||+++++
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 99999999999999999999999999999999999999999999999999998887888888888888999999999999
Q ss_pred HHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEE
Q 007873 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (586)
Q Consensus 243 ~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vit 322 (586)
|.+++..++..+.+.++|+|+|+||+.+||.|+...+..++++..+....++...+..+.+...+++++.++..||.|+|
T Consensus 168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t 247 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT 247 (536)
T ss_dssp HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence 99999998888888899999999999999999999999999998888777777777777777889999999999999999
Q ss_pred eCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (586)
||+.+++++.....+|.+++...+..++.+|+||+|.+.|+|.++.++..+|+..+..+.|..+|..+++++||+.+++.
T Consensus 248 VS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~ 327 (536)
T 3vue_A 248 VSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKI 327 (536)
T ss_dssp SCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred cCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCC
Confidence 99999999987666788777777788999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
|+|+|+||+.++||++.|++|++++.+++.+|+|+|.|+...+..++.+...+++++.+.+.++.++.+.+|++||++|+
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v~ 407 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAV 407 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhheeec
Confidence 99999999999999999999999998889999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 007873 483 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 562 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 562 (586)
||++|+||++++|||+||+|||+|++||++|+|.++.||++++....++..++|.|+++|+++|.++++.+.++.+++|+
T Consensus 408 PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~~ 487 (536)
T 3vue_A 408 PSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMV 487 (536)
T ss_dssp CCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred ccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999866567899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc
Q 007873 563 KNGMAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 563 ~~~~~~~fsw~~~a~~~~~~~~ 584 (586)
+++|+++|||++++++|++.+.
T Consensus 488 ~~am~~~fSW~~~A~~y~~ly~ 509 (536)
T 3vue_A 488 RNCMNQDLSWKGPAKNWENVLL 509 (536)
T ss_dssp HHHHHSCCSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999764
No 2
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=9.6e-50 Score=435.20 Aligned_cols=455 Identities=32% Similarity=0.574 Sum_probs=345.2
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEE-EE-EeCCeeeEEEEEEEEeCCc
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVI-EL-KVGDKIEKVRFFHCHKRGV 162 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~gv 162 (586)
|||++|+.+++|+...||++.++.+|+++|+++||+|+|+++.++.....+...... .. ..++ .....+...+|+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~gv 77 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAG---HITLLFGHYNGV 77 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTC---CEEEEEEEETTE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCC---cEEEEEEEECCc
Confidence 899999999888655899999999999999999999999998754322211111000 00 0010 112233345799
Q ss_pred eEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchH
Q 007873 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLI 242 (586)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~ 242 (586)
++++++.+.++.+ . ..+|+...+.+|.++..++..+...+.++++.+.. ..+|| |||+|+|..+++
T Consensus 78 ~v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~D-ivh~~~~~~~~~ 143 (485)
T 2qzs_A 78 GIYLIDAPHLYDR----P-GSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDP--------FWRPD-VVHAHDWHAGLA 143 (485)
T ss_dssp EEEEEECHHHHCC----S-SCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSST--------TCCCS-EEEEETGGGTTH
T ss_pred EEEEEeChhhccC----C-CCccCCcccCCCCchHHHHHHHHHHHHHHHHHhcc--------CCCCC-EEEeeccchhHH
Confidence 9998876544432 0 01455444556778888887777777776665431 13699 999999998888
Q ss_pred HHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEE
Q 007873 243 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (586)
Q Consensus 243 ~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vit 322 (586)
+.+++... .++|+|+++|+..+++.+....+..++++..+... .. ..+.....+++..++.+|.+++
T Consensus 144 ~~~~~~~~------~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~ad~vi~ 210 (485)
T 2qzs_A 144 PAYLAARG------RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNI----HG---LEFNGQISFLKAGLYYADHITA 210 (485)
T ss_dssp HHHHHHTT------CSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCST----TT---TEETTEEEHHHHHHHHCSEEEE
T ss_pred HHHHhhcc------CCCCEEEEecCccccCCCCHHHHHhcCCCchhccc----cc---ccccccccHHHHHHHhcCeEEe
Confidence 77766211 48999999999876554443333333333322110 00 0001123566778899999999
Q ss_pred eCHHHHHHHhcCccCCCcchhhh--hc--cCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNII--RK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~--~~--~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (586)
+|+.+++.+.+. .+|++++.++ +. .++.+||||+|.+.|.|..+..+..+|+..+. ..+...+..+++++|++.
T Consensus 211 ~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~ 288 (485)
T 2qzs_A 211 VSPTYAREITEP-QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLKV 288 (485)
T ss_dssp SSHHHHHHTTSH-HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCG-GGGHHHHHHHHHHHTCCC
T ss_pred cCHHHHHHHhcc-ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccch-hHHHHhHHHHHHHcCCCC
Confidence 999999988741 1343222222 12 58999999999999998877777777877664 566677889999999986
Q ss_pred CCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
+++.++|+|+||+.++||++.|++|++.+.+++++|+|+|+|+..+.+.++++..++++++..+..+..+++..+|+.||
T Consensus 289 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ad 368 (485)
T 2qzs_A 289 DDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGAD 368 (485)
T ss_dssp CTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCC
Confidence 55668999999999999999999999999777999999999986678899999988877787666677777789999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccC---------cceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
++|+||++|+||++++|||+||+|||+|+.||+.|++.++ .+|+++ +++|+++|+++|.++
T Consensus 369 v~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~l 438 (485)
T 2qzs_A 369 VILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF----------EDSNAWSLLRAIRRA 438 (485)
T ss_dssp EEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------CSSSHHHHHHHHHHH
T ss_pred EEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEE----------CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899998 999999999999999
Q ss_pred H---HhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 550 L---ATYGTQALAEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 550 l---~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
+ ++ ++.+++|++++++++|||+.++++|++.+
T Consensus 439 l~~~~~--~~~~~~~~~~~~~~~fs~~~~~~~~~~ly 473 (485)
T 2qzs_A 439 FVLWSR--PSLWRFVQRQAMAMDFSWQVAAKSYRELY 473 (485)
T ss_dssp HHHHTS--HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHcCC--HHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9 46 78899999999989999999999999865
No 3
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.1e-49 Score=434.79 Aligned_cols=454 Identities=35% Similarity=0.592 Sum_probs=347.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcc-eEEEE--EeCCeeeEEEEEEEEeCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD-VVIEL--KVGDKIEKVRFFHCHKRG 161 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~g 161 (586)
|||++|+.+++|+...||++.++.+|+++|+++||+|+|+++.++.....+... ...+. ..+. ..+..+...+|
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g 77 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGE---KADLLEVQHER 77 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSC---CEEEEEEEETT
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCC---eEEEEEEEecC
Confidence 899999999988645799999999999999999999999998754322211100 00000 0110 12233344589
Q ss_pred ceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhh-cccCCCCCCCCCCCCEEEEecCCccc
Q 007873 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYGEDVVFVANDWHTS 240 (586)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~pDvii~~h~~~~~ 240 (586)
++++.++.+.++.+ . ..+|+...+.+|.++..++..+..++.++++.+ + .++|| |||+|+|.++
T Consensus 78 v~v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~D-iIh~~~~~~~ 142 (485)
T 1rzu_A 78 LDLLILDAPAYYER----S-GGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLP---------GWRPD-MVHAHDWQAA 142 (485)
T ss_dssp EEEEEEECHHHHCS----S-SCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSS---------SCCCS-EEEEEHHHHT
T ss_pred ceEEEEeChHHhCC----C-ccccCCcccccccchHHHHHHHHHHHHHHHHHhcc---------CCCCC-EEEecccchh
Confidence 99998876544432 0 125554456668888888888887777776654 2 13699 9999999888
Q ss_pred hHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEE
Q 007873 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMV 320 (586)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 320 (586)
+++.+++... ..++|+|+++|+..+++.+....+..++++..+... +. ..+.....+++..++.+|.+
T Consensus 143 ~~~~~~~~~~-----~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~ad~v 210 (485)
T 1rzu_A 143 MTPVYMRYAE-----TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGM----EG---IEYYNDVSFLKGGLQTATAL 210 (485)
T ss_dssp THHHHHHHSS-----SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSST----TT---TEETTEEEHHHHHHHHCSEE
T ss_pred HHHHHHhhcc-----cCCCCEEEEecCccccCCCCHHHHhhcCCChhhccc----cc---ccccccccHHHHHHhhcCEE
Confidence 8877776541 148999999999876665554444444444332210 00 00001235667888999999
Q ss_pred EEeCHHHHHHHhcCccCCCcchhhh--hccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCC
Q 007873 321 LTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (586)
Q Consensus 321 itvS~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (586)
+++|+..++.+.+. .+|..++.++ ...++.+||||+|.+.|.|..+..+..+|+..+. +.+...+..+++++|++.
T Consensus 211 i~~S~~~~~~~~~~-~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~ 288 (485)
T 1rzu_A 211 STVSPSYAEEILTA-EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDD 288 (485)
T ss_dssp EESCHHHHHHTTSH-HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBC-TTHHHHHHHHHHHHTCCC
T ss_pred EecCHhHHHHHhcc-ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccch-hhHHHhHHHHHHhcCCCC
Confidence 99999999998741 1232211111 2348999999999999998877777777777664 567777889999999985
Q ss_pred CCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
++ .++|+|+||+.++||++.|++|++.+.+++++|+|+|+|+..+.+.++++..++++++..+..++.+++..+|+.||
T Consensus 289 ~~-~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~ad 367 (485)
T 1rzu_A 289 DG-SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCD 367 (485)
T ss_dssp SS-SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCS
T ss_pred CC-CeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCC
Confidence 42 46999999999999999999999999778999999999986678899999988877888666778888789999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccC---------cceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g---------~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
++|+||.+|+||++++|||+||+|||+|+.||+.|++.++ .+|+++ ++.|+++|+++|.++
T Consensus 368 v~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~l 437 (485)
T 1rzu_A 368 AIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQF----------SPVTLDGLKQAIRRT 437 (485)
T ss_dssp EEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------SSCSHHHHHHHHHHH
T ss_pred EEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEe----------CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899998 999999999999999
Q ss_pred H---HhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 550 L---ATYGTQALAEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 550 l---~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
+ ++ ++.+++|++++++++|||+.++++|++.+
T Consensus 438 l~~~~~--~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 472 (485)
T 1rzu_A 438 VRYYHD--PKLWTQMQKLGMKSDVSWEKSAGLYAALY 472 (485)
T ss_dssp HHHHTC--HHHHHHHHHHHHTCCCBHHHHHHHHHHHH
T ss_pred HHHhCC--HHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9 56 88899999999989999999999999865
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.6e-47 Score=406.41 Aligned_cols=419 Identities=25% Similarity=0.349 Sum_probs=325.3
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCc
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (586)
++|||++|+.+++| ...||++.++.+|+++|+++||+|+|+++.++...+.. ...+.+-......+......+|+
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~gv 75 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEE----IGKIRVFGEEVQVKVSYEERGNL 75 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEE----EEEEEETTEEEEEEEEEEEETTE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhh----hccccccCcccceeeeeccCCCc
Confidence 37999999999888 46899999999999999999999999999865544321 11111122344556666678999
Q ss_pred eEEEEcCccccccccCCCCCcccCCCCCCCCcch-hHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccch
Q 007873 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDN-QLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (586)
Q Consensus 163 ~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~ 241 (586)
+++.++. .++.+ ..+|+. +.++ ..++..+...+.+.++.+-. ..++|| |||+|+|..++
T Consensus 76 ~v~~~~~-~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D-ii~~~~~~~~~ 135 (439)
T 3fro_A 76 RIYRIGG-GLLDS------EDVYGP-----GWDGLIRKAVTFGRASVLLLNDLLR-------EEPLPD-VVHFHDWHTVF 135 (439)
T ss_dssp EEEEEES-GGGGC------SSTTCS-----HHHHHHHHHHHHHHHHHHHHHHHTT-------TSCCCS-EEEEESGGGHH
T ss_pred eEEEecc-hhccc------cccccC-----CcchhhhhhHHHHHHHHHHHHHHhc-------cCCCCe-EEEecchhhhh
Confidence 9999987 44443 244432 5566 67777788888888877610 013699 99999999888
Q ss_pred HHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEE
Q 007873 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (586)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 321 (586)
++.++++. .++|+|+++|+...... +..+.. .....+........+++..++.+|.++
T Consensus 136 ~~~~~~~~-------~~~~~v~~~h~~~~~~~-----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ad~ii 193 (439)
T 3fro_A 136 AGALIKKY-------FKIPAVFTIHRLNKSKL-----------PAFYFH----EAGLSELAPYPDIDPEHTGGYIADIVT 193 (439)
T ss_dssp HHHHHHHH-------HCCCEEEEESCCCCCCE-----------EHHHHH----HTTCGGGCCSSEECHHHHHHHHCSEEE
T ss_pred hHHHHhhc-------cCCCEEEEecccccccC-----------chHHhC----ccccccccccceeeHhhhhhhhccEEE
Confidence 88887755 48999999998764221 111100 000000001123366788899999999
Q ss_pred EeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCC
Q 007873 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (586)
Q Consensus 322 tvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (586)
++|+.+++.... .++++ ..++.+||||+|.+.|.|.... ..+...+..+++++|++. +
T Consensus 194 ~~S~~~~~~~~~--~~~~~------~~~i~vi~ngvd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~ 251 (439)
T 3fro_A 194 TVSRGYLIDEWG--FFRNF------EGKITYVFNGIDCSFWNESYLT------------GSRDERKKSLLSKFGMDE--G 251 (439)
T ss_dssp ESCHHHHHHTHH--HHGGG------TTSEEECCCCCCTTTSCGGGSC------------SCHHHHHHHHHHHHTCCS--C
T ss_pred ecCHHHHHHHhh--hhhhc------CCceeecCCCCCchhcCccccc------------chhhhhHHHHHHHcCCCC--C
Confidence 999999888442 11222 3499999999999998775311 234556888999999963 3
Q ss_pred CcEEEEEecCc-cccCHHHHHHHHhhccc----CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh
Q 007873 402 IPVIGFIGRLE-EQKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 402 ~~~i~~iGrl~-~~KG~d~Ll~A~~~l~~----~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~ 476 (586)
++|+|+||+. ++||++.+++|++.+.+ ++++|+|+|+|+..+.+.++++..++++.+.+.+..+.+++..+|+.
T Consensus 252 -~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 330 (439)
T 3fro_A 252 -VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS 330 (439)
T ss_dssp -EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT
T ss_pred -cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH
Confidence 8999999999 99999999999999977 69999999999977779999999998844445555788899999999
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH-hcCH
Q 007873 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGT 555 (586)
Q Consensus 477 aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~-~~~~ 555 (586)
||++|+||.+|+||++++|||+||+|||+|+.||+.|++.++ +|+++ +++|+++++++|.++++ + +
T Consensus 331 adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~----------~~~d~~~la~~i~~ll~~~--~ 397 (439)
T 3fro_A 331 VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILV----------KAGDPGELANAILKALELS--R 397 (439)
T ss_dssp CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEE----------CTTCHHHHHHHHHHHHHHT--T
T ss_pred CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEe----------CCCCHHHHHHHHHHHHhcC--H
Confidence 999999999999999999999999999999999999999987 99998 99999999999999999 6 6
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHhc
Q 007873 556 QALAEMMKNGMA--QDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 556 ~~~~~~~~~~~~--~~fsw~~~a~~~~~~~~ 584 (586)
+.++++++++.+ ++|||+.++++|++.+.
T Consensus 398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (439)
T 3fro_A 398 SDLSKFRENCKKRAMSFSWEKSAERYVKAYT 428 (439)
T ss_dssp TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 778888888854 78999999999998654
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=2.7e-41 Score=362.89 Aligned_cols=396 Identities=18% Similarity=0.251 Sum_probs=280.0
Q ss_pred CCCceeeecCCCceEEEEeccccCcc-----ccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCC
Q 007873 73 NGPSLMIVCGVGLNILFVGTEVAPWS-----KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGD 147 (586)
Q Consensus 73 ~~~~~~~~~~~~MkIl~v~~~~~P~~-----~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~ 147 (586)
+++.+....++.|||++|+..|+|.. ..||.+.++.+|+++|+++||+|+++++........
T Consensus 9 ~~~~~~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~------------- 75 (438)
T 3c48_A 9 HHSSGLVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE------------- 75 (438)
T ss_dssp ----------CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS-------------
T ss_pred ccccCcccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc-------------
Confidence 33444455566799999999888832 369999999999999999999999999864211110
Q ss_pred eeeEEEEEEEEeCCceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHH-hHhhcccCCCCCCCCC
Q 007873 148 KIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPY 226 (586)
Q Consensus 148 ~~~~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 226 (586)
.....+|+.++.++...+... . ..+....+..+...+++. ++...
T Consensus 76 -------~~~~~~~v~v~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~----------- 121 (438)
T 3c48_A 76 -------IVRVAENLRVINIAAGPYEGL----------S------KEELPTQLAAFTGGMLSFTRREKV----------- 121 (438)
T ss_dssp -------EEEEETTEEEEEECCSCSSSC----------C------GGGGGGGHHHHHHHHHHHHHHHTC-----------
T ss_pred -------cccccCCeEEEEecCCCcccc----------c------hhHHHHHHHHHHHHHHHHHHhccC-----------
Confidence 011235677776643221100 0 000011111233333333 33221
Q ss_pred CCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcc
Q 007873 227 GEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
+|| |||+|.|..++++..+.+. .++|+|+++|+........ +.....+. ....
T Consensus 122 ~~D-iv~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~~~~~---~~~~~~~~----------------~~~~ 174 (438)
T 3c48_A 122 TYD-LIHSHYWLSGQVGWLLRDL-------WRIPLIHTAHTLAAVKNSY---RDDSDTPE----------------SEAR 174 (438)
T ss_dssp CCS-EEEEEHHHHHHHHHHHHHH-------HTCCEEEECSSCHHHHSCC-------CCHH----------------HHHH
T ss_pred CCC-EEEeCCccHHHHHHHHHHH-------cCCCEEEEecCCccccccc---ccccCCcc----------------hHHH
Confidence 399 9999988766666655554 3889999999864311100 00000000 0011
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHH
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 386 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (586)
..+.+..++.+|.|+++|+..++.+.+ .+|++.+ ++.+||||+|...|.|.... .
T Consensus 175 ~~~~~~~~~~~d~ii~~s~~~~~~~~~--~~g~~~~------k~~vi~ngvd~~~~~~~~~~-----------------~ 229 (438)
T 3c48_A 175 RICEQQLVDNADVLAVNTQEEMQDLMH--HYDADPD------RISVVSPGADVELYSPGNDR-----------------A 229 (438)
T ss_dssp HHHHHHHHHHCSEEEESSHHHHHHHHH--HHCCCGG------GEEECCCCCCTTTSCCC---------------------
T ss_pred HHHHHHHHhcCCEEEEcCHHHHHHHHH--HhCCChh------heEEecCCccccccCCcccc-----------------h
Confidence 223466788999999999999999875 2566544 89999999999988775321 1
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C--CeEEEEEeC----CChhhHHHHHHHHHHCC--
Q 007873 387 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E--NVQIIVLGT----GKKPMEKQLEQLEILYP-- 456 (586)
Q Consensus 387 ~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~--~v~lvIvG~----g~~~~~~~l~~l~~~~~-- 456 (586)
+..++++++++. +.++|+|+||+.++||++.+++|+..+.+ + +++|+|+|+ |+ ..+.++++..+++
T Consensus 230 ~~~~r~~~~~~~--~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~--~~~~l~~~~~~~~l~ 305 (438)
T 3c48_A 230 TERSRRELGIPL--HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNA--TPDTYRHMAEELGVE 305 (438)
T ss_dssp CHHHHHHTTCCS--SSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC--------CHHHHHHHHTTCT
T ss_pred hhhhHHhcCCCC--CCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCc--HHHHHHHHHHHcCCC
Confidence 234788889864 45899999999999999999999999975 3 799999998 54 5667777777654
Q ss_pred CceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCC
Q 007873 457 EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 536 (586)
Q Consensus 457 ~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~ 536 (586)
+++.+.+..+.+++..+|+.||++|+||..|+||++++|||+||+|||+++.||+.|++.++.+|+++ ++
T Consensus 306 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~ 375 (438)
T 3c48_A 306 KRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV----------DG 375 (438)
T ss_dssp TTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEE----------SS
T ss_pred CcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEEC----------CC
Confidence 57888888888889999999999999999999999999999999999999999999999999999998 99
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 537 VDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 537 ~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
.|+++++++|.+++++ ++.+++|++++. .++|||+.++++|++.+
T Consensus 376 ~d~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 422 (438)
T 3c48_A 376 HSPHAWADALATLLDD--DETRIRMGEDAVEHARTFSWAATAAQLSSLY 422 (438)
T ss_dssp CCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999998 888889988874 34499999999998865
No 6
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3.8e-40 Score=347.89 Aligned_cols=360 Identities=21% Similarity=0.277 Sum_probs=277.8
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCcc-ccCCcceEEEEEeCCeeeEEEEEEEEeC
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVRFFHCHKR 160 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (586)
|++|||++++..|+|. .||.+.++.+|+++| +||+|+|+++...... ..++ ...
T Consensus 2 ~~~mkIl~v~~~~~p~--~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~---------------------~~~ 56 (394)
T 3okp_A 2 SASRKTLVVTNDFPPR--IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYD---------------------KTL 56 (394)
T ss_dssp --CCCEEEEESCCTTS--CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHH---------------------TTC
T ss_pred CCCceEEEEeCccCCc--cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhc---------------------ccc
Confidence 4579999999998886 899999999999999 7999999998754321 1000 012
Q ss_pred CceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccc
Q 007873 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240 (586)
Q Consensus 161 gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~ 240 (586)
|+.++.++...++.. ..+...+.+.++.. +|| +||+|.....
T Consensus 57 ~~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~------------~~D-vv~~~~~~~~ 98 (394)
T 3okp_A 57 DYEVIRWPRSVMLPT-------------------------PTTAHAMAEIIRER------------EID-NVWFGAAAPL 98 (394)
T ss_dssp SSEEEEESSSSCCSC-------------------------HHHHHHHHHHHHHT------------TCS-EEEESSCTTG
T ss_pred ceEEEEccccccccc-------------------------hhhHHHHHHHHHhc------------CCC-EEEECCcchH
Confidence 455555433211110 02233344444443 599 8888875443
Q ss_pred -hHHHHHHhhccCCCCCCCce-EEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCC
Q 007873 241 -LIPCYLKTMYKPKGMYKSAK-VVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 318 (586)
Q Consensus 241 -~~~~~l~~~~~~~~~~~~~p-vv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 318 (586)
++...++. .++| +|+++|+....... ......+++..++.+|
T Consensus 99 ~~~~~~~~~--------~~~~~~i~~~h~~~~~~~~----------------------------~~~~~~~~~~~~~~~d 142 (394)
T 3okp_A 99 ALMAGTAKQ--------AGASKVIASTHGHEVGWSM----------------------------LPGSRQSLRKIGTEVD 142 (394)
T ss_dssp GGGHHHHHH--------TTCSEEEEECCSTHHHHTT----------------------------SHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHh--------cCCCcEEEEeccchhhhhh----------------------------cchhhHHHHHHHHhCC
Confidence 33333333 2554 88999975430000 0012344577789999
Q ss_pred EEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCC
Q 007873 319 MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (586)
Q Consensus 319 ~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (586)
.++++|+..++.+.+. ++. ..++.+||||+|.+.|.|.. +..+..+++++|++.
T Consensus 143 ~ii~~s~~~~~~~~~~--~~~-------~~~~~vi~ngv~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 196 (394)
T 3okp_A 143 VLTYISQYTLRRFKSA--FGS-------HPTFEHLPSGVDVKRFTPAT-----------------PEDKSATRKKLGFTD 196 (394)
T ss_dssp EEEESCHHHHHHHHHH--HCS-------SSEEEECCCCBCTTTSCCCC-----------------HHHHHHHHHHTTCCT
T ss_pred EEEEcCHHHHHHHHHh--cCC-------CCCeEEecCCcCHHHcCCCC-----------------chhhHHHHHhcCCCc
Confidence 9999999999998852 221 23899999999999888743 223678899999874
Q ss_pred CCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh
Q 007873 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~ 476 (586)
+.++|+|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+ ..+.++++...+..++.+.+..+.+++..+|+.
T Consensus 197 --~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 272 (394)
T 3okp_A 197 --TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAA 272 (394)
T ss_dssp --TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCT--THHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH
T ss_pred --CceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCch--HHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh
Confidence 34899999999999999999999999866 799999999997 667788877666678999999888999999999
Q ss_pred ccEEEEcCCC-------CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 477 ADFILIPSRF-------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 477 aDi~l~PS~~-------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
||++|+||.+ |++|++++|||++|+|||+++.||..|++.++ +|+++ +++|+++++++|.++
T Consensus 273 ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~----------~~~d~~~l~~~i~~l 341 (394)
T 3okp_A 273 ADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVV----------EGSDVDKLSELLIEL 341 (394)
T ss_dssp CSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEEC----------CTTCHHHHHHHHHHH
T ss_pred CCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEe----------CCCCHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999999 99998 899999999999999
Q ss_pred HHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 550 LATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 550 l~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
+++ ++.++++++++. .++|||+.++++|++.+
T Consensus 342 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 376 (394)
T 3okp_A 342 LDD--PIRRAAMGAAGRAHVEAEWSWEIMGERLTNIL 376 (394)
T ss_dssp HTC--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HhC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 998 888899998884 46799999999999865
No 7
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=7.5e-40 Score=358.61 Aligned_cols=400 Identities=16% Similarity=0.131 Sum_probs=285.5
Q ss_pred CceEEEEeccccCc---------cccchHHHHhhhhHHHHHhCCCeEEEEEecCCCcc-ccCCcceEEEEEeCCeeeEEE
Q 007873 84 GLNILFVGTEVAPW---------SKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYK-DAWDTDVVIELKVGDKIEKVR 153 (586)
Q Consensus 84 ~MkIl~v~~~~~P~---------~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 153 (586)
.|||++|+..++|. ...||++.++.+|+++|+++||+|+|+++...... ..+...
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~--------------- 71 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGE--------------- 71 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCS---------------
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhh---------------
Confidence 59999999988773 13699999999999999999999999998643111 100000
Q ss_pred EEEEE--eCCceEEEEcCccc--cccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCC
Q 007873 154 FFHCH--KRGVDRVFVDHPWF--LAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGED 229 (586)
Q Consensus 154 ~~~~~--~~gv~~~~v~~~~~--~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pD 229 (586)
.... .+|++++.++.... +.+ .. +. ..+..+...+.+.++... .+||
T Consensus 72 -~~~~~~~~gv~v~~~~~~~~~~~~~------~~---------~~---~~~~~~~~~l~~~l~~~~----------~~~D 122 (499)
T 2r60_A 72 -IDYYQETNKVRIVRIPFGGDKFLPK------EE---------LW---PYLHEYVNKIINFYREEG----------KFPQ 122 (499)
T ss_dssp -EEECTTCSSEEEEEECCSCSSCCCG------GG---------CG---GGHHHHHHHHHHHHHHHT----------CCCS
T ss_pred -HHhccCCCCeEEEEecCCCcCCcCH------HH---------HH---HHHHHHHHHHHHHHHhcC----------CCCC
Confidence 0011 24677766643211 000 00 00 011122333444444421 1599
Q ss_pred EEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCC-hhhccccccccCCCCCcCCcchh
Q 007873 230 VVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKIN 308 (586)
Q Consensus 230 vii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (586)
|||+|.+..++++..+.+. .++|+|+++|+........ +...+.+ ..+...+. +.....
T Consensus 123 -ivh~~~~~~~~~~~~~~~~-------~~~p~v~~~H~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~ 182 (499)
T 2r60_A 123 -VVTTHYGDGGLAGVLLKNI-------KGLPFTFTGHSLGAQKMEK---LNVNTSNFKEMDERFK---------FHRRII 182 (499)
T ss_dssp -EEEEEHHHHHHHHHHHHHH-------HCCCEEEECSSCHHHHHHT---TCCCSTTSHHHHHHHC---------HHHHHH
T ss_pred -EEEEcCCcchHHHHHHHHh-------cCCcEEEEccCcccccchh---hccCCCCcchhhhhHH---------HHHHHH
Confidence 9999987766666655554 3899999999865321100 0000000 00000000 000112
Q ss_pred hhhHHhhcCCEEEEeCHHHHHHHhcCccCC-C----cchhhhhccCeeEecCCcccCCcCCCCccccccccCcccccccc
Q 007873 309 WMKAGILESDMVLTVSPHYAQELVSGEDKG-V----ELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 383 (586)
Q Consensus 309 ~~~~~~~~ad~vitvS~~~~~~l~~~~~~g-~----~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~ 383 (586)
+.+..++.+|.|+++|+..++.+.+...+| + +.+ ++.+||||+|...|.|...
T Consensus 183 ~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~------ki~vi~ngvd~~~~~~~~~---------------- 240 (499)
T 2r60_A 183 AERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDD------KFSVIPPGVNTRVFDGEYG---------------- 240 (499)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGG------GEEECCCCBCTTTSSSCCC----------------
T ss_pred HHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCC------CeEEECCCcChhhcCccch----------------
Confidence 346678899999999999999887520034 4 333 8999999999998877532
Q ss_pred HHHHHHHHHHhC-----CCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C-CeEEEEEeC--CC-----------h
Q 007873 384 PLLKEALQAEVG-----LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E-NVQIIVLGT--GK-----------K 442 (586)
Q Consensus 384 ~~~~~~l~~~~g-----l~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~-~v~lvIvG~--g~-----------~ 442 (586)
...+..+++++| ++. +.++|+|+||+.++||++.+++|+..+.+ + .++|+|+|+ |+ .
T Consensus 241 ~~~~~~~r~~~~~~~~~~~~--~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~ 318 (499)
T 2r60_A 241 DKIKAKITKYLERDLGSERM--ELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEK 318 (499)
T ss_dssp HHHHHHHHHHHHHHSCGGGT--TSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHH
T ss_pred hhhHHHHHHHhcccccccCC--CCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccch
Confidence 123466788887 654 45899999999999999999999999965 2 468999998 32 1
Q ss_pred hhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhc----cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccc
Q 007873 443 PMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA----DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 516 (586)
Q Consensus 443 ~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~a----Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~ 516 (586)
.|.+.++++..+++ +++.+.+..+.+++..+|+.| |++|+||.+|+||++++|||+||+|||+|+.||+.|++.
T Consensus 319 ~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~ 398 (499)
T 2r60_A 319 EILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILD 398 (499)
T ss_dssp HHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTG
T ss_pred HHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhc
Confidence 12678888887765 478888888888999999999 999999999999999999999999999999999999999
Q ss_pred cCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 517 EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 517 ~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
++.+|+++ +++|+++|+++|.+++++ ++.++++++++. .++|||+.++++|++.+
T Consensus 399 ~~~~g~l~----------~~~d~~~la~~i~~ll~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y 456 (499)
T 2r60_A 399 GGKYGVLV----------DPEDPEDIARGLLKAFES--EETWSAYQEKGKQRVEERYTWQETARGYLEVI 456 (499)
T ss_dssp GGTSSEEE----------CTTCHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred CCceEEEe----------CCCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999998 999999999999999998 888899998884 45699999999998865
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=9.3e-40 Score=372.71 Aligned_cols=422 Identities=15% Similarity=0.177 Sum_probs=281.0
Q ss_pred CceEEEEecccc---------CccccchHHHHhh--------hhHHHHHhCCCeEE----EEEecCCCccccCCcceEEE
Q 007873 84 GLNILFVGTEVA---------PWSKTGGLGDVLG--------GLPPALAANGHRVM----TIAPRYDQYKDAWDTDVVIE 142 (586)
Q Consensus 84 ~MkIl~v~~~~~---------P~~~~GG~~~~~~--------~L~~~L~~~Gh~V~----vvt~~~~~~~~~~~~~~~~~ 142 (586)
.|+|++|+...+ |. +||...|+. +|+++|+++||+|+ |+|...+.. ...+.....+
T Consensus 278 ~~~i~~is~hg~~~~~~~lG~~d--tGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~-~g~~y~~~~e 354 (816)
T 3s28_A 278 VFNVVILSPHGYFAQDNVLGYPD--TGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDA-VGTTCGERLE 354 (816)
T ss_dssp CCEEEEECCSSCCCSSSCTTSTT--CSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTC-TTSSTTSSEE
T ss_pred eeEEEEEcCCcccCccccCCCCC--CCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCC-CCCccCCcce
Confidence 689999998876 75 999999998 47777788999886 998875322 1111111111
Q ss_pred EEeCCeeeEEEEEEEEeCCceEEEEcCcc---ccccccCCCCCcccCCCCCCCCcchhHHHHHHH-HHHHHHhHhhcccC
Q 007873 143 LKVGDKIEKVRFFHCHKRGVDRVFVDHPW---FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC-QAALEAPRILNLNS 218 (586)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~gv~~~~v~~~~---~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 218 (586)
... ..+|+.++.++... +..+ |-. ...++ ... ..|. .++...++...
T Consensus 355 ~i~------------~~~gv~I~RvP~~~~~g~l~~-~l~-k~~L~---------~~L---~~F~~~~l~~il~~~~--- 405 (816)
T 3s28_A 355 RVY------------DSEYCDILRVPFRTEKGIVRK-WIS-RFEVW---------PYL---ETYTEDAAVELSKELN--- 405 (816)
T ss_dssp ECT------------TCSSEEEEEECEEETTEEECS-CCC-TTTCG---------GGH---HHHHHHHHHHHHHHCS---
T ss_pred eec------------CcCCeEEEEecCCCccccccc-ccc-HHHHH---------HHH---HHHHHHHHHHHHHhcC---
Confidence 100 01366666664211 0010 000 01111 111 1233 33333333332
Q ss_pred CCCCCCCCCCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCCh-hhccccccccC
Q 007873 219 NKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPA-QFKSSFDFIDG 297 (586)
Q Consensus 219 ~~~~~~~~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~ 297 (586)
.+|| |||+|.|.+++++..+++.. ++|+|+|.|+........ . +... .....+.+
T Consensus 406 -------~~PD-VIHsH~~~sglva~llar~~-------gvP~V~T~Hsl~~~k~~~-~-----~~~~~~~~~~y~~--- 461 (816)
T 3s28_A 406 -------GKPD-LIIGNYSDGNLVASLLAHKL-------GVTQCTIAHALEKTKYPD-S-----DIYWKKLDDKYHF--- 461 (816)
T ss_dssp -------SCCS-EEEEEHHHHHHHHHHHHHHH-------TCCEEEECSCCHHHHSTT-T-----TTTHHHHHHHHCH---
T ss_pred -------CCCe-EEEeCCchHHHHHHHHHHHc-------CCCEEEEEeccccccccc-c-----cchhhhHHHHHHH---
Confidence 2599 99999999988888887764 899999999875422111 0 0000 00000000
Q ss_pred CCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCc-cCCCc----chh---------hhhccCeeEecCCcccCCcC
Q 007873 298 YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE----LDN---------IIRKTGIKGIVNGMDVQEWN 363 (586)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~-~~g~~----~~~---------~~~~~~i~vI~ngvd~~~~~ 363 (586)
...+...+..+..||.|+++|+..++.+.... .++.. +.. .. ..++.+||||+|.+.|.
T Consensus 462 ------~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~-~~ki~VIpnGVD~~~F~ 534 (816)
T 3s28_A 462 ------SCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVF-DPKFNIVSPGADMSIYF 534 (816)
T ss_dssp ------HHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTT-CTTEEECCCCCCTTTSC
T ss_pred ------HHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccC-CCCEEEECCCcCHHHcC
Confidence 00112244578899999999999998643211 11110 000 00 12899999999999998
Q ss_pred CCCccc--cccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeC
Q 007873 364 PLTDKY--IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGT 439 (586)
Q Consensus 364 p~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~ 439 (586)
|...+. +..-+... +....++...++.+|+..+++.++|+|+||+.++||++.|++|+.++.+ ++++|+|+|+
T Consensus 535 P~~~~~~Rl~~~~~~i---~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~ 611 (816)
T 3s28_A 535 PYTEEKRRLTKFHSEI---EELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGG 611 (816)
T ss_dssp CTTCTTTCCGGGHHHH---HHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECC
T ss_pred ccchhhhhhhhccccc---cccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 865321 00000000 0000001123455666445677999999999999999999999999976 6899999999
Q ss_pred CCh---------hhHHHHHHHHHHCC--CceEEEeccC----hHHHHHHHH-hccEEEEcCCCCCCcHHHHHHHHcCCcE
Q 007873 440 GKK---------PMEKQLEQLEILYP--EKARGVAKFN----IPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVP 503 (586)
Q Consensus 440 g~~---------~~~~~l~~l~~~~~--~~v~~~~~~~----~~~~~~~l~-~aDi~l~PS~~E~~gl~~lEAma~G~Pv 503 (586)
|+. .+.+.++++..+++ +++.+.+..+ .+++..+++ .||++|+||.+|+||++++|||+||+||
T Consensus 612 g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PV 691 (816)
T 3s28_A 612 DRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPT 691 (816)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCE
T ss_pred CCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCE
Confidence 882 25667777777766 4777776433 366667777 6899999999999999999999999999
Q ss_pred EEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH----HhcCHHHHHHHHHHHH---HhcCCHHHHH
Q 007873 504 IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL----ATYGTQALAEMMKNGM---AQDLSWKVSI 576 (586)
Q Consensus 504 I~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll----~~~~~~~~~~~~~~~~---~~~fsw~~~a 576 (586)
|+|+.||+.|++.++.+|+++ ++.|+++++++|.+++ .+ ++.+++|+++++ .++|||+.++
T Consensus 692 Iasd~GG~~EiV~dg~~Gllv----------~p~D~e~LA~aI~~lL~~Ll~d--~~~~~~m~~~ar~~a~~~fSwe~~a 759 (816)
T 3s28_A 692 FATCKGGPAEIIVHGKSGFHI----------DPYHGDQAADTLADFFTKCKED--PSHWDEISKGGLQRIEEKYTWQIYS 759 (816)
T ss_dssp EEESSBTHHHHCCBTTTBEEE----------CTTSHHHHHHHHHHHHHHHHHC--THHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred EEeCCCChHHHHccCCcEEEe----------CCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999998 9999999999998777 66 788899999985 3889999999
Q ss_pred HHHHHHh
Q 007873 577 GTVQEED 583 (586)
Q Consensus 577 ~~~~~~~ 583 (586)
++|++.+
T Consensus 760 ~~ll~lY 766 (816)
T 3s28_A 760 QRLLTLT 766 (816)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=3.3e-38 Score=334.61 Aligned_cols=363 Identities=19% Similarity=0.186 Sum_probs=262.1
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
-|+.-+....| |. .||.+.++.+|+++|+++||+|+++++..+.... ...+|+.
T Consensus 13 ~~~~~~~~~~~-p~--~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----------------------~~~~~i~ 66 (394)
T 2jjm_A 13 HMKLKIGITCY-PS--VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN-----------------------KVYPNIY 66 (394)
T ss_dssp --CCEEEEECC-C----CHHHHHHHHHHHHHHHTTCEEEEECSSCC---------------------------CCCTTEE
T ss_pred hheeeeehhcC-CC--CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc-----------------------ccCCceE
Confidence 36666666665 43 7999999999999999999999999975321100 0112333
Q ss_pred EEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH
Q 007873 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (586)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~ 243 (586)
+..++.+.+.. +. +. ... ..+...+.+.++.. +|| |||+|.+....+.
T Consensus 67 ~~~~~~~~~~~----------~~------~~--~~~-~~~~~~l~~~l~~~------------~~D-vv~~~~~~~~~~~ 114 (394)
T 2jjm_A 67 FHEVTVNQYSV----------FQ------YP--PYD-LALASKMAEVAQRE------------NLD-ILHVHYAIPHAIC 114 (394)
T ss_dssp EECCCCC--------------CC------SC--CHH-HHHHHHHHHHHHHH------------TCS-EEEECSSTTHHHH
T ss_pred EEecccccccc----------cc------cc--ccc-HHHHHHHHHHHHHc------------CCC-EEEEcchhHHHHH
Confidence 33232211100 00 00 001 11223344444443 599 9999976543333
Q ss_pred HH-HHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEE
Q 007873 244 CY-LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 322 (586)
Q Consensus 244 ~~-l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vit 322 (586)
.+ .+.... .++|+|+++|+.... . .+. ......+++..++.+|.+++
T Consensus 115 ~~~~~~~~~-----~~~p~v~~~h~~~~~-~--------~~~------------------~~~~~~~~~~~~~~ad~ii~ 162 (394)
T 2jjm_A 115 AYLAKQMIG-----ERIKIVTTLHGTDIT-V--------LGS------------------DPSLNNLIRFGIEQSDVVTA 162 (394)
T ss_dssp HHHHHHHTT-----TCSEEEEECCHHHHH-T--------TTT------------------CTTTHHHHHHHHHHSSEEEE
T ss_pred HHHHHHhhc-----CCCCEEEEEecCccc-c--------cCC------------------CHHHHHHHHHHHhhCCEEEE
Confidence 33 333321 268999999974320 0 000 00122455677889999999
Q ss_pred eCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (586)
+|+..++.+.+. ++. ..++.+||||+|...|.|.. +..++++++++. +.
T Consensus 163 ~s~~~~~~~~~~--~~~-------~~~~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~~--~~ 211 (394)
T 2jjm_A 163 VSHSLINETHEL--VKP-------NKDIQTVYNFIDERVYFKRD--------------------MTQLKKEYGISE--SE 211 (394)
T ss_dssp SCHHHHHHHHHH--TCC-------SSCEEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC-----
T ss_pred CCHHHHHHHHHh--hCC-------cccEEEecCCccHHhcCCcc--------------------hHHHHHHcCCCC--CC
Confidence 999999998852 222 23899999999999887753 345678888864 44
Q ss_pred cEEEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhccE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
++|+|+||+.++||++.+++|+..+.+ .+++|+|+|+|+ ..+.++++..+++ +++.+.+. .+++..+|+.||+
T Consensus 212 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~g~--~~~~~~~~~~adv 287 (394)
T 2jjm_A 212 KILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGP--EFCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMSDL 287 (394)
T ss_dssp CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCT--THHHHHHHHHTTTCGGGBCCCBS--CSCTHHHHHTCSE
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCch--HHHHHHHHHHHcCCCCeEEEeCc--hhhHHHHHHhCCE
Confidence 899999999999999999999999976 579999999988 5667777777665 45666653 3556789999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHH
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 559 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 559 (586)
+++||.+|+||++++|||+||+|||+++.||+.|++.++.+|+++ +++|+++++++|.+++++ ++.++
T Consensus 288 ~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~----------~~~d~~~la~~i~~l~~~--~~~~~ 355 (394)
T 2jjm_A 288 MLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLC----------EVGDTTGVADQAIQLLKD--EELHR 355 (394)
T ss_dssp EEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEE----------CTTCHHHHHHHHHHHHHC--HHHHH
T ss_pred EEeccccCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEe----------CCCCHHHHHHHHHHHHcC--HHHHH
Confidence 999999999999999999999999999999999999999999998 999999999999999998 88888
Q ss_pred HHHHHHH---HhcCCHHHHHHHHHHHh
Q 007873 560 EMMKNGM---AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 560 ~~~~~~~---~~~fsw~~~a~~~~~~~ 583 (586)
+|++++. .++|||+.++++|++.+
T Consensus 356 ~~~~~~~~~~~~~~s~~~~~~~~~~~~ 382 (394)
T 2jjm_A 356 NMGERARESVYEQFRSEKIVSQYETIY 382 (394)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9998885 38899999999999865
No 10
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1.9e-37 Score=331.14 Aligned_cols=359 Identities=14% Similarity=0.092 Sum_probs=256.1
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCc-cccCCcceEEEEEeCCeeeEEEEEEEEeC
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY-KDAWDTDVVIELKVGDKIEKVRFFHCHKR 160 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (586)
|++|||++++.. + ..||.+.++.+|+++|+++||+|.+++...... .+.. +
T Consensus 38 ~~~mkIl~v~~~--~--~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~------------------------~ 89 (416)
T 2x6q_A 38 LKGRSFVHVNST--S--FGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVT------------------------K 89 (416)
T ss_dssp TTTCEEEEEESC--S--SSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHH------------------------H
T ss_pred hhccEEEEEeCC--C--CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhh------------------------c
Confidence 567999999986 3 279999999999999999999999998653210 0000 0
Q ss_pred CceEEEEcCccccccccCCCCCcccCCCCCCCCcchhH-HHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCcc
Q 007873 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQL-RFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHT 239 (586)
Q Consensus 161 gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~ 239 (586)
++. ..+. +...+. +..... .+..+...+.+.++. .+|| |||+|++..
T Consensus 90 ~~~-------~~~~------~~~~~~------~~~~~~~~~~~~~~~~~~~l~~------------~~~D-vv~~~~~~~ 137 (416)
T 2x6q_A 90 TFH-------NALQ------GNESLK------LTEEMKELYLNVNRENSKFIDL------------SSFD-YVLVHDPQP 137 (416)
T ss_dssp HHH-------HHHT------TCCSCC------CCHHHHHHHHHHHHHHHHSSCG------------GGSS-EEEEESSTT
T ss_pred ccc-------eeec------cccccc------ccHHHHHHHHHHHHHHHHHHhh------------cCCC-EEEEeccch
Confidence 000 0000 000000 111111 111122222222222 2599 999998765
Q ss_pred chHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCE
Q 007873 240 SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDM 319 (586)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 319 (586)
..+..+++ ..+|+|+++|+..... ......+++..+..+|.
T Consensus 138 ~~~~~~~~---------~~~p~v~~~h~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 178 (416)
T 2x6q_A 138 AALIEFYE---------KKSPWLWRCHIDLSSP------------------------------NREFWEFLRRFVEKYDR 178 (416)
T ss_dssp GGGGGGSC---------CCSCEEEECCSCCSSC------------------------------CHHHHHHHHHHHTTSSE
T ss_pred hhHHHHHH---------hcCCEEEEEccccCCc------------------------------cHHHHHHHHHHHHhCCE
Confidence 44322211 2489999999743210 00123455666778887
Q ss_pred EE-EeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCC
Q 007873 320 VL-TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPV 398 (586)
Q Consensus 320 vi-tvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~ 398 (586)
++ ++|+..++.+ + ..++.+||||+|...+.+.. ..+..+..++++++++.
T Consensus 179 ~i~~~s~~~~~~~--------~------~~~~~vi~ngvd~~~~~~~~---------------~~~~~~~~~r~~~~~~~ 229 (416)
T 2x6q_A 179 YIFHLPEYVQPEL--------D------RNKAVIMPPSIDPLSEKNVE---------------LKQTEILRILERFDVDP 229 (416)
T ss_dssp EEESSGGGSCTTS--------C------TTTEEECCCCBCTTSTTTSC---------------CCHHHHHHHHHHTTCCT
T ss_pred EEEechHHHHhhC--------C------ccceEEeCCCCChhhhcccc---------------cChhhHHHHHHHhCCCC
Confidence 76 5565443321 1 23899999999987765432 11234667889999874
Q ss_pred CCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCCh---hhHHHHHHHHHHCC--CceEEEeccC---hH
Q 007873 399 DRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEILYP--EKARGVAKFN---IP 468 (586)
Q Consensus 399 ~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~---~~~~~l~~l~~~~~--~~v~~~~~~~---~~ 468 (586)
+.++|+|+||+.++||++.+++|+..+.+ ++++|+|+|+|+. .+.+.++++..+++ +++.+.+.++ .+
T Consensus 230 --~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~ 307 (416)
T 2x6q_A 230 --EKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAR 307 (416)
T ss_dssp --TSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHH
T ss_pred --CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHH
Confidence 44899999999999999999999999976 6999999999962 34556667666544 4788887553 56
Q ss_pred HHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHH
Q 007873 469 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (586)
Q Consensus 469 ~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ 548 (586)
++..+|+.||++|+||.+|+||++++|||+||+|||+++.||+.|++.++.+|+++ + |+++++++|.+
T Consensus 308 ~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~----------~--d~~~la~~i~~ 375 (416)
T 2x6q_A 308 EVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLV----------R--DANEAVEVVLY 375 (416)
T ss_dssp HHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEE----------S--SHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEE----------C--CHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999997 4 99999999999
Q ss_pred HHHhcCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHhc
Q 007873 549 ALATYGTQALAEMMKNGM---AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 549 ll~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~~~ 584 (586)
++++ ++.+++|++++. .++|||+.++++|++.+.
T Consensus 376 ll~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 412 (416)
T 2x6q_A 376 LLKH--PEVSKEMGAKAKERVRKNFIITKHMERYLDILN 412 (416)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHhC--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9998 888899999884 468999999999998653
No 11
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.2e-38 Score=334.44 Aligned_cols=358 Identities=16% Similarity=0.162 Sum_probs=256.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||++++..++| .||.+.++.+|+++|+++||+|+++++...... .+|+++
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--------------------------~~~~~v 51 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--------------------------PKAFEL 51 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--------------------------CTTCEE
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--------------------------CCCcEE
Confidence 899999998777 599999999999999999999999997632100 125555
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
+.++.+.+. +..++..+...+.+.++.. +|| +||+|.+..+....
T Consensus 52 ~~~~~~~~~----------------------~~~~~~~~~~~l~~~i~~~------------~~D-vv~~~~~~~~~~~~ 96 (374)
T 2iw1_A 52 IQVPVKSHT----------------------NHGRNAEYYAWVQNHLKEH------------PAD-RVVGFNKMPGLDVY 96 (374)
T ss_dssp EECCCCCSS----------------------HHHHHHHHHHHHHHHHHHS------------CCS-EEEESSCCTTCSEE
T ss_pred EEEccCccc----------------------chhhHHHHHHHHHHHHhcc------------CCC-EEEEecCCCCceee
Confidence 555322111 1112223333444444433 599 89998754332110
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhh--cCCEEEE
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL--ESDMVLT 322 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~vit 322 (586)
+... ...++.+.+.|+.... ....+ .....+.+..+. .+|.+++
T Consensus 97 ~~~~-------~~~~~~~~~~~~~~~~------------~~~~~---------------~~~~~~~~~~~~~~~~d~ii~ 142 (374)
T 2iw1_A 97 FAAD-------VCYAEKVAQEKGFLYR------------LTSRY---------------RHYAAFERATFEQGKSTKLMM 142 (374)
T ss_dssp ECCS-------CCHHHHHHHHCCHHHH------------TSHHH---------------HHHHHHHHHHHSTTCCCEEEE
T ss_pred eccc-------cccceeeeecccchhh------------hcHHH---------------HHHHHHHHHHhhccCCcEEEE
Confidence 0000 0122223223321110 00000 001112233333 6999999
Q ss_pred eCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (586)
+|+..++.+.+ .+|++.+ ++.+||||+|...|.|... ...+..+++++|++. +.
T Consensus 143 ~s~~~~~~~~~--~~~~~~~------~~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~ 196 (374)
T 2iw1_A 143 LTDKQIADFQK--HYQTEPE------RFQILPPGIYPDRKYSEQI----------------PNSREIYRQKNGIKE--QQ 196 (374)
T ss_dssp SCHHHHHHHHH--HHCCCGG------GEEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTTCCT--TC
T ss_pred cCHHHHHHHHH--HhCCChh------heEEecCCcCHHhcCcccc----------------hhHHHHHHHHhCCCC--CC
Confidence 99999999885 2465544 8999999999988876432 123567889999875 44
Q ss_pred cEEEEEecCccccCHHHHHHHHhhccc---CCeEEEEEeCCChhhHHHHHHHHHHCC--CceEEEeccChHHHHHHHHhc
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~---~~v~lvIvG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~a 477 (586)
++|+|+||+.++||++.+++|+..+.+ ++++|+|+|+|+. +.++++..+++ +++.+.+. .+++..+|+.|
T Consensus 197 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~a 271 (374)
T 2iw1_A 197 NLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP---RKFEALAEKLGVRSNVHFFSG--RNDVSELMAAA 271 (374)
T ss_dssp EEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC---HHHHHHHHHHTCGGGEEEESC--CSCHHHHHHHC
T ss_pred eEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH---HHHHHHHHHcCCCCcEEECCC--cccHHHHHHhc
Confidence 899999999999999999999999965 4899999999873 44555555543 46887774 34577899999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCC-CCCHHHHHHHHHHHHHhcCHH
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD-PVDVAAVSTTVRRALATYGTQ 556 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~-~~d~~~la~~I~~ll~~~~~~ 556 (586)
|++++||.+|+||++++|||+||+|||+++.||..|++.++.+|+++ + +.|+++++++|.+++++ ++
T Consensus 272 d~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~----------~~~~~~~~l~~~i~~l~~~--~~ 339 (374)
T 2iw1_A 272 DLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVI----------AEPFSQEQLNEVLRKALTQ--SP 339 (374)
T ss_dssp SEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEE----------CSSCCHHHHHHHHHHHHHC--HH
T ss_pred CEEEeccccCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEe----------CCCCCHHHHHHHHHHHHcC--hH
Confidence 99999999999999999999999999999999999999999999998 7 88999999999999998 88
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 557 ALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 557 ~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
.++++++++. .++++|+..++++.+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (374)
T 2iw1_A 340 LRMAWAENARHYADTQDLYSLPEKAADII 368 (374)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8999999885 46788888888887754
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=5e-37 Score=325.62 Aligned_cols=357 Identities=18% Similarity=0.199 Sum_probs=260.7
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCC
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (586)
.+.|||+|++..++|. .||.+.++..|+++|+++||+|.++++...... ..... ...|
T Consensus 18 ~~~MkIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~~~~~------------------~~~~ 75 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDV--PGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK--LPDYV------------------VSGG 75 (406)
T ss_dssp ---CEEEEECSSCTTS--CCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC--CCTTE------------------EECC
T ss_pred CCcceEEEEeccCCCC--CCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc--CCccc------------------ccCC
Confidence 3469999999876553 699999999999999999999999998743220 00000 0011
Q ss_pred ceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccch
Q 007873 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL 241 (586)
Q Consensus 162 v~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~ 241 (586)
.++.++...... .+. +. ..+...+.+.++.. +|| +||+|.+....
T Consensus 76 -~~~~~~~~~~~~--------~~~-------~~------~~~~~~l~~~l~~~------------~~D-ii~~~~~~~~~ 120 (406)
T 2gek_A 76 -KAVPIPYNGSVA--------RLR-------FG------PATHRKVKKWIAEG------------DFD-VLHIHEPNAPS 120 (406)
T ss_dssp -CCC---------------------------CC------HHHHHHHHHHHHHH------------CCS-EEEEECCCSSS
T ss_pred -cEEeccccCCcc--------ccc-------cc------HHHHHHHHHHHHhc------------CCC-EEEECCccchH
Confidence 111111000000 000 10 01223333444443 599 88888876655
Q ss_pred HHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEE
Q 007873 242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321 (586)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 321 (586)
+...+.+. .++|+|+++|+...... +. .....+++..++.+|.++
T Consensus 121 ~~~~~~~~-------~~~~~i~~~h~~~~~~~--------------~~--------------~~~~~~~~~~~~~~d~ii 165 (406)
T 2gek_A 121 LSMLALQA-------AEGPIVATFHTSTTKSL--------------TL--------------SVFQGILRPYHEKIIGRI 165 (406)
T ss_dssp HHHHHHHH-------EESSEEEEECCCCCSHH--------------HH--------------HHHHSTTHHHHTTCSEEE
T ss_pred HHHHHHHh-------cCCCEEEEEcCcchhhh--------------hH--------------HHHHHHHHHHHhhCCEEE
Confidence 55444443 37899999997533110 00 011233346788999999
Q ss_pred EeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCC
Q 007873 322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 401 (586)
Q Consensus 322 tvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~ 401 (586)
++|+..++.+.+. ++ ..++ +||||+|...|.+.... .+++ ++
T Consensus 166 ~~s~~~~~~~~~~--~~--------~~~~-vi~~~v~~~~~~~~~~~-------------------------~~~~--~~ 207 (406)
T 2gek_A 166 AVSDLARRWQMEA--LG--------SDAV-EIPNGVDVASFADAPLL-------------------------DGYP--RE 207 (406)
T ss_dssp ESSHHHHHHHHHH--HS--------SCEE-ECCCCBCHHHHHTCCCC-------------------------TTCS--CS
T ss_pred ECCHHHHHHHHHh--cC--------CCcE-EecCCCChhhcCCCchh-------------------------hhcc--CC
Confidence 9999999988741 22 2378 99999998877654321 1122 13
Q ss_pred CcEEEEEecC-ccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 402 IPVIGFIGRL-EEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 402 ~~~i~~iGrl-~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
.++|+|+||+ .+.||++.+++|+..+.+ ++++|+|+|+|+. +.++++..++.+++.+.+..+.+++..+|+.||
T Consensus 208 ~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 284 (406)
T 2gek_A 208 GRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE---DELREQAGDLAGHLRFLGQVDDATKASAMRSAD 284 (406)
T ss_dssp SCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH---HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSS
T ss_pred CeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH---HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCC
Confidence 4799999999 999999999999999976 6899999999983 667777666556798888888888999999999
Q ss_pred EEEEcCC-CCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHH
Q 007873 479 FILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA 557 (586)
Q Consensus 479 i~l~PS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~ 557 (586)
++|+||. .|+||++++|||+||+|||+++.||+.|++.++.+|+++ +++|+++++++|.+++++ ++.
T Consensus 285 v~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~d~~~l~~~i~~l~~~--~~~ 352 (406)
T 2gek_A 285 VYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLV----------PVDDADGMAAALIGILED--DQL 352 (406)
T ss_dssp EEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEEC----------CTTCHHHHHHHHHHHHHC--HHH
T ss_pred EEEecCCCCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEe----------CCCCHHHHHHHHHHHHcC--HHH
Confidence 9999996 899999999999999999999999999999999999997 999999999999999998 888
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 558 LAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 558 ~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
+.++++++. .+.|||+.++++|++.+
T Consensus 353 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 380 (406)
T 2gek_A 353 RAGYVARASERVHRYDWSVVSAQIMRVY 380 (406)
T ss_dssp HHHHHHHHHHHGGGGBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888988874 35999999999998864
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=9e-37 Score=325.38 Aligned_cols=351 Identities=14% Similarity=0.125 Sum_probs=255.9
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCceE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (586)
|||+|++..+ |. .||.+.++..|+++|+++ |+|++++........ .. ....
T Consensus 1 MkI~~v~~~~-p~--~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~-~~------------------------~~~~ 51 (413)
T 3oy2_A 1 MKLIIVGAHS-SV--PSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSV-HA------------------------NIEE 51 (413)
T ss_dssp CEEEEEEECT-TC--CSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCS-CS------------------------SSEE
T ss_pred CeEEEecCCC-CC--CCCHHHHHHHHHHHHHhc-CCeEEEeecCCCccc-cc------------------------cccc
Confidence 9999999864 54 799999999999999999 999999976321000 00 0000
Q ss_pred EEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHHH
Q 007873 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC 244 (586)
Q Consensus 165 ~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~ 244 (586)
+.. . .... ...+.+.. + ....+.+.++.. +|| |||+|.|...+.+.
T Consensus 52 ~~~--~-~~~~------~~~~~~~~---~---------~~~~l~~~l~~~------------~~D-iv~~~~~~~~~~~~ 97 (413)
T 3oy2_A 52 FDA--Q-TAEH------VRGLNEQG---F---------YYSGLSEFIDVH------------KPD-IVMIYNDPIVIGNY 97 (413)
T ss_dssp EEH--H-HHHH------HTTCCSTT---C---------CHHHHHHHHHHH------------CCS-EEEEEECHHHHHHH
T ss_pred CCc--c-cccc------cccccccc---c---------hHHHHHHHHHhc------------CCC-EEEEcchHHHHHHH
Confidence 000 0 0000 00110000 0 011122223332 599 99999666554433
Q ss_pred HHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCC--EEEE
Q 007873 245 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD--MVLT 322 (586)
Q Consensus 245 ~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vit 322 (586)
..... + +....+++...|+..... ...++..++.+| .+++
T Consensus 98 ~~~~~-~---~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ii~ 139 (413)
T 3oy2_A 98 LLAMG-K---CSHRTKIVLYVDLVSKNI----------------------------------RENLWWIFSHPKVVGVMA 139 (413)
T ss_dssp HHHGG-G---CCSCCEEEEEECCCSBSC----------------------------------CGGGGGGGGCTTEEEEEE
T ss_pred HHHhc-c---CCCCCceeeeccccchhh----------------------------------HHHHHHHHhccCCceEEE
Confidence 33322 1 112356666666533200 011355678888 9999
Q ss_pred eCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCC
Q 007873 323 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 402 (586)
Q Consensus 323 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~ 402 (586)
+|+..++.+.+ +|++ .++.+||||+|...|. ..+++++++.+++.
T Consensus 140 ~S~~~~~~~~~---~~~~-------~~~~vi~ngvd~~~~~-------------------------~~~~~~~~~~~~~~ 184 (413)
T 3oy2_A 140 MSKCWISDICN---YGCK-------VPINIVSHFVDTKTIY-------------------------DARKLVGLSEYNDD 184 (413)
T ss_dssp SSTHHHHHHHH---TTCC-------SCEEECCCCCCCCCCT-------------------------THHHHTTCGGGTTS
T ss_pred cCHHHHHHHHH---cCCC-------CceEEeCCCCCHHHHH-------------------------HHHHhcCCCcccCc
Confidence 99999999986 5542 2899999999988771 13567787754456
Q ss_pred cEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChh----hHHHHHHHHHHCC--Cc-------eEEEeccCh
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKP----MEKQLEQLEILYP--EK-------ARGVAKFNI 467 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~----~~~~l~~l~~~~~--~~-------v~~~~~~~~ 467 (586)
++|+|+||+.++||++.+++|+..+.+ ++++|+|+|+|+.. +++.++++..+++ ++ +.+.+..+.
T Consensus 185 ~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~ 264 (413)
T 3oy2_A 185 VLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTD 264 (413)
T ss_dssp EEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCH
T ss_pred eEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCH
Confidence 899999999999999999999999865 78999999998742 3477777776654 23 555566688
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcc---------------eE--EEcccccc
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFT---------------GF--QMGSFSVD 530 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~---------------G~--~~~~~~~~ 530 (586)
+++..+|+.||++|+||.+|+||++++|||+||+|||+|+.||+.|++.++.+ |+ ++
T Consensus 265 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~------ 338 (413)
T 3oy2_A 265 ERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIE------ 338 (413)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEE------
T ss_pred HHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceee------
Confidence 89999999999999999999999999999999999999999999999999887 88 88
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHhc
Q 007873 531 CEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMA---QDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 531 ~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~~~ 584 (586)
++.|+++|+++| +++++ ++.+++|++++.+ ++|||+.++++|++.+.
T Consensus 339 ----~~~d~~~la~~i-~l~~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 388 (413)
T 3oy2_A 339 ----GIIDVDDLVEAF-TFFKD--EKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFN 388 (413)
T ss_dssp ----EECCHHHHHHHH-HHTTS--HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899999999999 99998 8888999998853 78999999999998653
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=4.7e-37 Score=319.44 Aligned_cols=309 Identities=15% Similarity=0.110 Sum_probs=239.5
Q ss_pred CCCceEEEEecc--------c---cCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeee
Q 007873 82 GVGLNILFVGTE--------V---APWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIE 150 (586)
Q Consensus 82 ~~~MkIl~v~~~--------~---~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (586)
|+.|||++++.. + +|. ..||.+.++.+|+++|+++||+|+++++.......
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~-~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~----------------- 62 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQ-GYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR----------------- 62 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCS-SSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----------------
T ss_pred CCccEEEEEeccccccCcccccccCcc-cCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----------------
Confidence 567999999998 3 442 46999999999999999999999999986322110
Q ss_pred EEEEEEEEeCCceEEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCE
Q 007873 151 KVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDV 230 (586)
Q Consensus 151 ~~~~~~~~~~gv~~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDv 230 (586)
+++.++ ..+ .. ..+.+.++.. +||
T Consensus 63 ---------~~~~~~--~~~-------------------------~~-------~~l~~~l~~~------------~~D- 86 (342)
T 2iuy_A 63 ---------PGLTVV--PAG-------------------------EP-------EEIERWLRTA------------DVD- 86 (342)
T ss_dssp ---------TTEEEC--SCC-------------------------SH-------HHHHHHHHHC------------CCS-
T ss_pred ---------Ccceec--cCC-------------------------cH-------HHHHHHHHhc------------CCC-
Confidence 122211 000 00 0222333332 599
Q ss_pred EEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhh
Q 007873 231 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWM 310 (586)
Q Consensus 231 ii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (586)
|||+|.+...... .. ..++| |+++|+.....
T Consensus 87 vi~~~~~~~~~~~---~~-------~~~~p-v~~~h~~~~~~-------------------------------------- 117 (342)
T 2iuy_A 87 VVHDHSGGVIGPA---GL-------PPGTA-FISSHHFTTRP-------------------------------------- 117 (342)
T ss_dssp EEEECSSSSSCST---TC-------CTTCE-EEEEECSSSBC--------------------------------------
T ss_pred EEEECCchhhHHH---Hh-------hcCCC-EEEecCCCCCc--------------------------------------
Confidence 9999987654332 11 25889 99999754300
Q ss_pred hHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHH
Q 007873 311 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (586)
Q Consensus 311 ~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (586)
..+|.++++|+..++.+.+ ..++.+||||+|...|.|...
T Consensus 118 ----~~~d~ii~~S~~~~~~~~~-------------~~~~~vi~ngvd~~~~~~~~~----------------------- 157 (342)
T 2iuy_A 118 ----VNPVGCTYSSRAQRAHCGG-------------GDDAPVIPIPVDPARYRSAAD----------------------- 157 (342)
T ss_dssp ----SCCTTEEESCHHHHHHTTC-------------CTTSCBCCCCBCGGGSCCSTT-----------------------
T ss_pred ----ccceEEEEcCHHHHHHHhc-------------CCceEEEcCCCChhhcCcccc-----------------------
Confidence 0199999999999998774 128999999999988876532
Q ss_pred HHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
.. ++.++|+|+||+.++||++.+++|++.+ +++|+|+|+|+ ..+.++++..++++++.+.+..+.+++
T Consensus 158 ----~~---~~~~~i~~vG~~~~~Kg~~~li~a~~~~---~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~l 225 (342)
T 2iuy_A 158 ----QV---AKEDFLLFMGRVSPHKGALEAAAFAHAC---GRRLVLAGPAW--EPEYFDEITRRYGSTVEPIGEVGGERR 225 (342)
T ss_dssp ----CC---CCCSCEEEESCCCGGGTHHHHHHHHHHH---TCCEEEESCCC--CHHHHHHHHHHHTTTEEECCCCCHHHH
T ss_pred ----cC---CCCCEEEEEeccccccCHHHHHHHHHhc---CcEEEEEeCcc--cHHHHHHHHHHhCCCEEEeccCCHHHH
Confidence 01 2346899999999999999999999998 89999999997 566777777776678999888899889
Q ss_pred HHHHHhccEEEEcCC----------CCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEccccccccCCCCCC
Q 007873 471 HMIIAGADFILIPSR----------FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSFSVDCEAVDPVD 538 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~----------~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~~~~~~~~~v~~~d 538 (586)
..+|+.||++++||. .|+||++++|||+||+|||+++.||+.|++.+ +.+|+++ ++ |
T Consensus 226 ~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~----------~~-d 294 (342)
T 2iuy_A 226 LDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGT----------DF-A 294 (342)
T ss_dssp HHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSS----------CC-C
T ss_pred HHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEc----------CC-C
Confidence 999999999999999 79999999999999999999999999999999 9999987 88 9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007873 539 VAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 539 ~~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~~ 583 (586)
+++++++|.++++ .+.+++...++|||+.++++|++.+
T Consensus 295 ~~~l~~~i~~l~~-------~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (342)
T 2iuy_A 295 PDEARRTLAGLPA-------SDEVRRAAVRLWGHVTIAERYVEQY 332 (342)
T ss_dssp HHHHHHHHHTSCC-------HHHHHHHHHHHHBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999876 1122222458899999999998865
No 15
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=9.1e-37 Score=333.90 Aligned_cols=437 Identities=16% Similarity=0.165 Sum_probs=290.1
Q ss_pred EEeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEecCCCccc----cCC-cceE--------EE---EEeCCeeeE
Q 007873 89 FVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRYDQYKD----AWD-TDVV--------IE---LKVGDKIEK 151 (586)
Q Consensus 89 ~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~~~~~~~----~~~-~~~~--------~~---~~~~~~~~~ 151 (586)
=++.++.- +.||+-+++..-|+.+.+. |-+..++.|....... ..+ .... .. .....+--.
T Consensus 32 E~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 109 (725)
T 3nb0_A 32 ETATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVH 109 (725)
T ss_dssp EEETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTTTCC
T ss_pred eeehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHCCCe
Confidence 35666654 7999999999988887755 8899999985321111 000 0000 00 000111234
Q ss_pred EEEEEEEeCCceEEEE-cCccccc-------cccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCC
Q 007873 152 VRFFHCHKRGVDRVFV-DHPWFLA-------KVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFS 223 (586)
Q Consensus 152 ~~~~~~~~~gv~~~~v-~~~~~~~-------~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 223 (586)
+++.+..++|.+++.+ +...++. ..|...| +-++..+. +.+...+|.+++.++++.+..+.
T Consensus 110 v~~GrW~i~G~P~viL~d~~~~~~~~~~~~~~lw~~~~--i~s~~~yg-~~dd~~~F~y~~~avl~~l~~~~-------- 178 (725)
T 3nb0_A 110 FVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVG--IPSPENDF-ETNDAILLGYTVAWFLGEVAHLD-------- 178 (725)
T ss_dssp EEEEEESSTTCCEEEEECSGGGGGGHHHHHHHHHHHHC--CCCCSSCH-HHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEEEEecCCCceEEEEeChHHHHHHHHHHHHHHHHhC--cCCCCccc-chhHHHHHHHHHHHHHHHHHhcC--------
Confidence 6777888889886644 5443333 3564333 22222222 44577899999999999887654
Q ss_pred CCCCCCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCcc------ccccCc-ccccccCCChhhcccccccc
Q 007873 224 GPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAY------QGRFAF-EDFGLLNLPAQFKSSFDFID 296 (586)
Q Consensus 224 ~~~~pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~------~~~~~~-~~~~~~~l~~~~~~~~~~~~ 296 (586)
.+.|| |+|+|||++++++.+++..+ .++|+|||+|+..+ |+.+.. ..+..++++.....
T Consensus 179 -~~~pd-IiH~HDW~tg~~~~~Lk~~~------~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~------ 244 (725)
T 3nb0_A 179 -SQHAI-VAHFHEWLAGVALPLCRKRR------IDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGR------ 244 (725)
T ss_dssp -CSEEE-EEEEESGGGCTHHHHHHHTT------CSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHH------
T ss_pred -CCCCc-EEEeCchhhhHHHHHHHHhC------CCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhh------
Confidence 23589 99999999999999999764 69999999999853 232221 11222232222110
Q ss_pred CCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCc
Q 007873 297 GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 376 (586)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~ 376 (586)
.-.....++++.++..||.|+|||+.+++++.. .++.+.+ .+||||+|+..|+|...
T Consensus 245 ----~~i~~~~~~EKaga~~AD~ITTVS~~yA~Ei~~--Ll~r~~d--------~iIpNGID~~~f~p~~~--------- 301 (725)
T 3nb0_A 245 ----FGIYHRYCIERAAAHSADVFTTVSQITAFEAEH--LLKRKPD--------GILPNGLNVIKFQAFHE--------- 301 (725)
T ss_dssp ----TTCHHHHHHHHHHHHHSSEEEESSHHHHHHHHH--HTSSCCS--------EECCCCBCCCCCSSTTH---------
T ss_pred ----hchhHHHHHHHHHHHhCCEEEECCHHHHHHHHH--HhcCCCC--------EEEcCCccccccCcchh---------
Confidence 001125688899999999999999999999985 2343322 33999999999998631
Q ss_pred cccccccHHHHHHHHHHh------CCCCC-CCCcEEEEEecCc-cccCHHHHHHHHhhccc---------CCeEEEEEeC
Q 007873 377 STVMDAKPLLKEALQAEV------GLPVD-RNIPVIGFIGRLE-EQKGSDILAAAIPHFIK---------ENVQIIVLGT 439 (586)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~------gl~~~-~~~~~i~~iGrl~-~~KG~d~Ll~A~~~l~~---------~~v~lvIvG~ 439 (586)
....+...|..+++.+ |++.+ ++.++|+.+||++ ++||+|.+++|+.+|.. .-+.|+|+..
T Consensus 302 --~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~ 379 (725)
T 3nb0_A 302 --FQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPA 379 (725)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCC
T ss_pred --hHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Confidence 0123445566666554 44443 3445666689999 79999999999999863 1377888887
Q ss_pred CChhh--------------HHHHH-----------HHH------------------------------------------
Q 007873 440 GKKPM--------------EKQLE-----------QLE------------------------------------------ 452 (586)
Q Consensus 440 g~~~~--------------~~~l~-----------~l~------------------------------------------ 452 (586)
+...+ .+.+. +..
T Consensus 380 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~l 459 (725)
T 3nb0_A 380 KNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQL 459 (725)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCC
T ss_pred CCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCC
Confidence 63211 00000 000
Q ss_pred --------------------HHC--C----C--ceEEEeccChH-------HHHHHHHhccEEEEcCCCCCCcHHHHHHH
Q 007873 453 --------------------ILY--P----E--KARGVAKFNIP-------LAHMIIAGADFILIPSRFEPCGLIQLHAM 497 (586)
Q Consensus 453 --------------------~~~--~----~--~v~~~~~~~~~-------~~~~~l~~aDi~l~PS~~E~~gl~~lEAm 497 (586)
.++ . + ++.++..|... ....++++||++|+||++|+||++++|||
T Consensus 460 pp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAm 539 (725)
T 3nb0_A 460 PPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECT 539 (725)
T ss_dssp CCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHH
T ss_pred CCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHH
Confidence 000 0 1 25666666322 36789999999999999999999999999
Q ss_pred HcCCcEEEcCCcCcccccccC-------cceEEEccccccccCCCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHH--
Q 007873 498 RYGTVPIVASTGGLVDTVEEG-------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY---GTQALAEMMKNG-- 565 (586)
Q Consensus 498 a~G~PvI~s~~gg~~e~v~~g-------~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~---~~~~~~~~~~~~-- 565 (586)
|||+|||+|++||+.|++.++ .+|+++- .-++.|+++++++|.+++..+ .+..+.+|++++
T Consensus 540 A~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~-------~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~ 612 (725)
T 3nb0_A 540 VMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIV-------DRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEA 612 (725)
T ss_dssp HTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEE-------CCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCEEEeCCCChhhhhhccccccCCCCceEEEe-------CCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999876 4798760 013457777777777777531 256677888877
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 007873 566 MAQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 566 ~~~~fsw~~~a~~~~~~~~ 584 (586)
++++|||+.++++|++.+.
T Consensus 613 ~A~~FSWe~iA~~Yl~~Ye 631 (725)
T 3nb0_A 613 LSDLLDWKRMGLEYVKARQ 631 (725)
T ss_dssp GGGGGBHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4689999999999998764
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=3.4e-33 Score=298.96 Aligned_cols=351 Identities=12% Similarity=0.093 Sum_probs=227.8
Q ss_pred ecCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEe
Q 007873 80 VCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHK 159 (586)
Q Consensus 80 ~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (586)
....+|||++++..|+|....||.. .+.+|+++|+++||+|+|+++......... . ..
T Consensus 42 ~~~~~mrI~~v~~~~~p~~~~GG~~-~v~~la~~L~~~GheV~Vvt~~~~~~~~~~-------~--------------~~ 99 (413)
T 2x0d_A 42 SSIKGKRLNLLVPSINQEHMFGGIS-TALKLFEQFDNKKFKKRIILTDATPNPKDL-------Q--------------SF 99 (413)
T ss_dssp CCCCSCEEEEEESCCCGGGCSHHHH-HHHHHHTTSCTTTCEEEEEESSCCCCHHHH-------G--------------GG
T ss_pred CCCCCceEEEEeCCCCccccccHHH-HHHHHHHHHHHcCCceEEEEecCCCChHHH-------H--------------hh
Confidence 3467899999999998842346665 688999999999999999998632100000 0 00
Q ss_pred CCceEEEEcCc-cccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCc
Q 007873 160 RGVDRVFVDHP-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWH 238 (586)
Q Consensus 160 ~gv~~~~v~~~-~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~ 238 (586)
.+.....+..+ .+..+ +.. +.. . ....+.. .++| +||+|.|.
T Consensus 100 ~~~~~~~~~~~~~~~~~--------i~~------~~~----------~---~~~~~~~---------~~~D-vv~a~~~~ 142 (413)
T 2x0d_A 100 KSFKYVMPEEDKDFALQ--------IVP------FND----------R---YNRTIPV---------AKHD-IFIATAWW 142 (413)
T ss_dssp TTSEECCTTCCCCCSEE--------EEE------CSC----------C---TTCCEEE---------CTTE-EEEECSHH
T ss_pred hccceeeccCCccccce--------eee------ccc----------c---ccccccC---------CCCC-EEEEehHH
Confidence 01100000000 00000 000 000 0 0000000 1489 88999987
Q ss_pred cchHHHHHH----hhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHh
Q 007873 239 TSLIPCYLK----TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGI 314 (586)
Q Consensus 239 ~~~~~~~l~----~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (586)
++.....+. ..+. ....|.++.+|+.... +. . ......+.+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~--~~-------~-------------------~~~~~~~~~~~~ 190 (413)
T 2x0d_A 143 TAYAAQRIVSWQSDTYG----IPPNKILYIIQDFEPG--FY-------Q-------------------WSSQYVLAESTY 190 (413)
T ss_dssp HHHHHHHHHHHHHHHHT----CCCCCEEEEECSCGGG--GS-------C-------------------SSHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhhhcc----cccCcEEEEEeechhh--cC-------c-------------------cChHHHHHHHHh
Confidence 766554431 1110 0256788888865421 00 0 000112233445
Q ss_pred hcCC--EEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 315 LESD--MVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 315 ~~ad--~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
..++ .++++|+..++.+.+ +|++.+ ++.+|+||+|.+.|.+...
T Consensus 191 ~~~~~~~vi~~S~~~~~~l~~---~g~~~~------~~~~i~~g~d~~~~~~~~~------------------------- 236 (413)
T 2x0d_A 191 KYRGPQIAVFNSELLKQYFNN---KGYNFT------DEYFFQPKINTTLKNYIND------------------------- 236 (413)
T ss_dssp SCCSCEEEEEESHHHHHHHHH---HTCCCS------EEEEECCCCCHHHHTTTTS-------------------------
T ss_pred ccCCceEEEEcCHHHHHHHHH---cCCCCC------ceEEeCCCcCchhhccccc-------------------------
Confidence 5554 589999999999986 344322 6889999999775543210
Q ss_pred HhCCCCCCCCcEEEEEecC-ccccCHHHHHHHHhhccc--C---CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccC
Q 007873 393 EVGLPVDRNIPVIGFIGRL-EEQKGSDILAAAIPHFIK--E---NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 466 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl-~~~KG~d~Ll~A~~~l~~--~---~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~ 466 (586)
..++.+.|+++||+ .+.||++.|++|++.+.+ + +++|+|+|+|... .++ ....++.+.+..+
T Consensus 237 -----~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----~~l--~~~~~v~f~G~~~ 304 (413)
T 2x0d_A 237 -----KRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----IAL--GKGIHLNSLGKLT 304 (413)
T ss_dssp -----CCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----EEE--ETTEEEEEEESCC
T ss_pred -----ccCCCCEEEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----hhc--CCcCcEEEcCCCC
Confidence 11234689999996 689999999999999865 4 3899999998742 111 1234688888888
Q ss_pred hHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 467 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 467 ~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
.+++..+|+.||++++||..|+||++++||||||+|||++ .+|..|++.++.+|+++ ++.|+++|+++|
T Consensus 305 ~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv----------~~~d~~~la~ai 373 (413)
T 2x0d_A 305 LEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSL----------EQLNPENIAETL 373 (413)
T ss_dssp HHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEE----------SSCSHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEe----------CCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999995 56788999999999998 999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007873 547 RRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 547 ~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 581 (586)
.+++++ ++.+++ .....++.|||+...+++.-
T Consensus 374 ~~ll~~--~~~~~~-~~~~~~~~~~W~~~~~~~~~ 405 (413)
T 2x0d_A 374 VELCMS--FNNRDV-DKKESSNMMFYINEFNEFSF 405 (413)
T ss_dssp HHHHHH--TC--------CCBSCGGGCCCC---TT
T ss_pred HHHHcC--HHHHHH-hHHHHHHhCCHHHHHHHHHH
Confidence 999998 444444 21123478999998776443
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=3.3e-29 Score=262.08 Aligned_cols=334 Identities=15% Similarity=0.008 Sum_probs=226.7
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCccccCCcceEEEEEeCCeeeEEEEEEEEeCCce
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (586)
.|||++++. + .||....+..|+++|+++||+|.++++......... ...|++
T Consensus 6 ~mkIl~~~~---~---~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~----------------------~~~g~~ 57 (364)
T 1f0k_A 6 GKRLMVMAG---G---TGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLV----------------------PKHGIE 57 (364)
T ss_dssp -CEEEEECC---S---SHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHG----------------------GGGTCE
T ss_pred CcEEEEEeC---C---CccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhc----------------------cccCCc
Confidence 389999973 2 588888899999999999999999998632111100 012455
Q ss_pred EEEEcCccccccccCCCCCcccCCCCCCCCcchhHHHHHHHHHHHHHhHhhcccCCCCCCCCCCCCEEEEecCCccchHH
Q 007873 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP 243 (586)
Q Consensus 164 ~~~v~~~~~~~~~w~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~ 243 (586)
++.++.+.+... .... ......++......+.+.++.. +|| +||+|.....+..
T Consensus 58 ~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~l~~~l~~~------------~pD-vv~~~~~~~~~~~ 111 (364)
T 1f0k_A 58 IDFIRISGLRGK-------GIKA------LIAAPLRIFNAWRQARAIMKAY------------KPD-VVLGMGGYVSGPG 111 (364)
T ss_dssp EEECCCCCCTTC-------CHHH------HHTCHHHHHHHHHHHHHHHHHH------------CCS-EEEECSSTTHHHH
T ss_pred eEEecCCccCcC-------ccHH------HHHHHHHHHHHHHHHHHHHHhc------------CCC-EEEEeCCcCchHH
Confidence 544432211100 0000 0001111111223333444433 599 8888865433333
Q ss_pred HHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcchhhhhHHhhcCCEEEEe
Q 007873 244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323 (586)
Q Consensus 244 ~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitv 323 (586)
..+.+. .++|++++.|+... + ...+...+.+|.+++.
T Consensus 112 ~~~~~~-------~~~p~v~~~~~~~~-~-----------------------------------~~~~~~~~~~d~v~~~ 148 (364)
T 1f0k_A 112 GLAAWS-------LGIPVVLHEQNGIA-G-----------------------------------LTNKWLAKIATKVMQA 148 (364)
T ss_dssp HHHHHH-------TTCCEEEEECSSSC-C-----------------------------------HHHHHHTTTCSEEEES
T ss_pred HHHHHH-------cCCCEEEEecCCCC-c-----------------------------------HHHHHHHHhCCEEEec
Confidence 333333 48999999996421 0 0112235679999988
Q ss_pred CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCc
Q 007873 324 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 403 (586)
Q Consensus 324 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~ 403 (586)
++.. ++ ++.+|+||+|...+.+.. .+++++++. +.+
T Consensus 149 ~~~~-----------~~--------~~~~i~n~v~~~~~~~~~-----------------------~~~~~~~~~--~~~ 184 (364)
T 1f0k_A 149 FPGA-----------FP--------NAEVVGNPVRTDVLALPL-----------------------PQQRLAGRE--GPV 184 (364)
T ss_dssp STTS-----------SS--------SCEECCCCCCHHHHTSCC-----------------------HHHHHTTCC--SSE
T ss_pred Chhh-----------cC--------CceEeCCccchhhcccch-----------------------hhhhcccCC--CCc
Confidence 7643 11 577999999987665432 134566653 335
Q ss_pred E-EEEEecCccccCHHHHHHHHhhcccCCeE-EEEEeCCChhhHHHHHHHHHHCC-CceEEEeccChHHHHHHHHhccEE
Q 007873 404 V-IGFIGRLEEQKGSDILAAAIPHFIKENVQ-IIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 404 ~-i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~-lvIvG~g~~~~~~~l~~l~~~~~-~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
+ +++.|++.++||.+.+++|+..+.+ +++ ++++|+|+ . +.++++..+++ .++.+.+.. +++..+|+.||++
T Consensus 185 ~il~~~g~~~~~k~~~~li~a~~~l~~-~~~~l~i~G~~~--~-~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~ 258 (364)
T 1f0k_A 185 RVLVVGGSQGARILNQTMPQVAAKLGD-SVTIWHQSGKGS--Q-QSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVV 258 (364)
T ss_dssp EEEEECTTTCCHHHHHHHHHHHHHHGG-GEEEEEECCTTC--H-HHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEE
T ss_pred EEEEEcCchHhHHHHHHHHHHHHHhcC-CcEEEEEcCCch--H-HHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEE
Confidence 4 4555799999999999999999966 788 56789887 2 55666666655 367777655 4567899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcc--------cccccCcceEEEccccccccCCCCCC--HHHHHHHHHHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV--------DTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRAL 550 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~--------e~v~~g~~G~~~~~~~~~~~~v~~~d--~~~la~~I~~ll 550 (586)
|+||. |++++|||+||+|||+++.+|.. +++.++ .|+++ +++| +++|+++|.++
T Consensus 259 v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~----------~~~d~~~~~la~~i~~l- 322 (364)
T 1f0k_A 259 VCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKII----------EQPQLSVDAVANTLAGW- 322 (364)
T ss_dssp EECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEEC----------CGGGCCHHHHHHHHHTC-
T ss_pred EECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEe----------ccccCCHHHHHHHHHhc-
Confidence 99993 99999999999999999999875 455555 59997 8888 99999999999
Q ss_pred HhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 551 ATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
+ ++.+++|++++. .+.|+|+.++++|++.+
T Consensus 323 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 354 (364)
T 1f0k_A 323 -S--RETLLTMAERARAASIPDATERVANEVSRVA 354 (364)
T ss_dssp -C--HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 5 888899999885 47899999999999865
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=1.3e-29 Score=270.63 Aligned_cols=196 Identities=16% Similarity=0.112 Sum_probs=160.0
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHH
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
.+++..++.+|.|+++|+..++.+.+ .| ++.+||||+|.+.|.|....
T Consensus 170 ~~~~~~~~~ad~vi~~S~~~~~~~~~---~~----------~i~vipngvd~~~f~~~~~~------------------- 217 (406)
T 2hy7_A 170 REFDRVAPTLDVIALVSPAMAAEVVS---RD----------NVFHVGHGVDHNLDQLGDPS------------------- 217 (406)
T ss_dssp HHHHHHGGGCSEEEESCGGGGGGCSC---ST----------TEEECCCCBCTTHHHHHCSC-------------------
T ss_pred HHHHHHHHhCCEEEEcCHHHHHHHHh---cC----------CEEEEcCCcChHhcCccccc-------------------
Confidence 45677889999999999999887764 22 68999999998877543210
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccCh
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (586)
..++.++|+|+||+.+.||+ ++++.+. .++++|+|+|+|+ ++++ ...+++.+.+..+.
T Consensus 218 ----------~~~~~~~i~~vGrl~~~Kg~---~~~l~~~-~~~~~l~ivG~g~------~~~~--~l~~~V~f~G~~~~ 275 (406)
T 2hy7_A 218 ----------PYAEGIHAVAVGSMLFDPEF---FVVASKA-FPQVTFHVIGSGM------GRHP--GYGDNVIVYGEMKH 275 (406)
T ss_dssp ----------SCCSSEEEEEECCTTBCHHH---HHHHHHH-CTTEEEEEESCSS------CCCT--TCCTTEEEECCCCH
T ss_pred ----------ccCCCcEEEEEeccccccCH---HHHHHHh-CCCeEEEEEeCch------HHhc--CCCCCEEEcCCCCH
Confidence 11233799999999999999 4444332 3799999999987 1111 23457999988888
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHH-------HcCCcEEEcCCcCcccccccCcceEE-EccccccccCCCCCCH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAM-------RYGTVPIVASTGGLVDTVEEGFTGFQ-MGSFSVDCEAVDPVDV 539 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAm-------a~G~PvI~s~~gg~~e~v~~g~~G~~-~~~~~~~~~~v~~~d~ 539 (586)
+++..+|+.||++++||..|+||++++||| +||+|||+|+. +.++.+|++ + +++|+
T Consensus 276 ~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v----------~~~d~ 339 (406)
T 2hy7_A 276 AQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGY----------TPGNA 339 (406)
T ss_dssp HHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEE----------CTTCH
T ss_pred HHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEe----------CCCCH
Confidence 899999999999999999999999999999 99999999987 677889999 8 99999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007873 540 AAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 540 ~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~ 582 (586)
++|+++|.+++++.. . ..++.|||+.+++++++.
T Consensus 340 ~~la~ai~~ll~~~~------~---~~~~~~sw~~~a~~~~~~ 373 (406)
T 2hy7_A 340 DSVIAAITQALEAPR------V---RYRQCLNWSDTTDRVLDP 373 (406)
T ss_dssp HHHHHHHHHHHHCCC------C---CCSCCCBHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhCcc------h---hhhhcCCHHHHHHHHHHh
Confidence 999999999999843 1 236889999999999876
No 19
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=1.9e-27 Score=258.47 Aligned_cols=290 Identities=14% Similarity=0.118 Sum_probs=208.3
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCccc-ccccCCChhhccccccccCCCCCcCCcc
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRK 306 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
+| |||+|||+..+++.+++... .++|+++++|...+ ... +.. +| .
T Consensus 124 ~D-iV~vHdyhl~~l~~~lr~~~------~~~~i~~~~H~pfp-----~~~~~~~--lp--------------------~ 169 (482)
T 1uqt_A 124 DD-IIWIHDYHLLPFAHELRKRG------VNNRIGFFLHIPFP-----TPEIFNA--LP--------------------T 169 (482)
T ss_dssp TC-EEEEESGGGTTHHHHHHHTT------CCSCEEEECCSCCC-----CHHHHTT--ST--------------------T
T ss_pred CC-EEEEECchHHHHHHHHHHhC------CCCcEEEEEcCCCC-----CHHHHhh--Cc--------------------c
Confidence 68 99999999999999888753 58999999996422 110 000 01 1
Q ss_pred hhhhhHHhhcCCEEEEeCHHHHHHHhcCcc--CCCcc------hhhhhccCeeEecCCcccCCcCCCCccccccccCccc
Q 007873 307 INWMKAGILESDMVLTVSPHYAQELVSGED--KGVEL------DNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 378 (586)
Q Consensus 307 ~~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~g~~~------~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~ 378 (586)
...+...+..+|.+...+..+.+.+.+... .+.+. ...-+..++.+||||+|++.|.+....
T Consensus 170 ~~~il~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~---------- 239 (482)
T 1uqt_A 170 YDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAG---------- 239 (482)
T ss_dssp HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHS----------
T ss_pred HHHHHHhhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcC----------
Confidence 122344556789988888877766543110 11100 000112478999999999887543110
Q ss_pred cccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C----CeEEEEEeCCC----h---hhH
Q 007873 379 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK----K---PME 445 (586)
Q Consensus 379 ~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~----~v~lvIvG~g~----~---~~~ 445 (586)
..... ..+++++++ +.++|+++||+++.||++.+++|++++.+ + +++|+++|.+. + .++
T Consensus 240 --~~~~~-~~~lr~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~ 311 (482)
T 1uqt_A 240 --PLPPK-LAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIR 311 (482)
T ss_dssp --CCCHH-HHHHHHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHH
T ss_pred --cchHH-HHHHHHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHH
Confidence 00111 356777776 34899999999999999999999999854 2 58899999632 1 245
Q ss_pred HHHHHHHHHCC--------CceEEE-eccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCC-----cEEEcCCcCc
Q 007873 446 KQLEQLEILYP--------EKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-----VPIVASTGGL 511 (586)
Q Consensus 446 ~~l~~l~~~~~--------~~v~~~-~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~-----PvI~s~~gg~ 511 (586)
+++++++.+.+ ..+.+. +.++.+++..+|+.||++++||..|+||++++||||||+ |+|+|+.+|.
T Consensus 312 ~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~ 391 (482)
T 1uqt_A 312 HQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA 391 (482)
T ss_dssp HHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGG
T ss_pred HHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCC
Confidence 56666654422 125544 455788899999999999999999999999999999997 8999998888
Q ss_pred ccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 512 VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 512 ~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
.+.+. +|+++ +|.|++++|++|.+++++. ++.++++.++++ .+.|||+..+++|++.+
T Consensus 392 ~~~l~---~g~lv----------~p~d~~~lA~ai~~lL~~~-~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l 451 (482)
T 1uqt_A 392 ANELT---SALIV----------NPYDRDEVAAALDRALTMS-LAERISRHAEMLDVIVKNDINHWQECFISDL 451 (482)
T ss_dssp GGTCT---TSEEE----------CTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhC---CeEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88873 78998 9999999999999999852 455666766664 36799999999998864
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.96 E-value=2.5e-27 Score=248.58 Aligned_cols=223 Identities=15% Similarity=0.091 Sum_probs=171.8
Q ss_pred hhHHh-hcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCC-cccCCcCCCCccccccccCccccccccHHHH
Q 007873 310 MKAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 387 (586)
Q Consensus 310 ~~~~~-~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ng-vd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (586)
.+..+ +.+|.++++|+..++.+.+ +|++.+ ++.+|+|| +|...+.+.... +
T Consensus 143 ~~~~~~~~~d~ii~~s~~~~~~~~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~~------------------~ 195 (375)
T 3beo_A 143 NRQLTGVMADLHFSPTAKSATNLQK---ENKDES------RIFITGNTAIDALKTTVKETY------------------S 195 (375)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHCCSSC------------------C
T ss_pred hhhHHhhhhheeeCCCHHHHHHHHH---cCCCcc------cEEEECChhHhhhhhhhhhhh------------------h
Confidence 33334 3499999999999999875 576644 89999999 787666443200 1
Q ss_pred HHHHHHhCCCCCCCCcEEEEEecCccc-cCHHHHHHHHhhccc--CCeEEEEEeCCC-hhhHHHHHHHHHHCCCceEEEe
Q 007873 388 EALQAEVGLPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGK-KPMEKQLEQLEILYPEKARGVA 463 (586)
Q Consensus 388 ~~l~~~~gl~~~~~~~~i~~iGrl~~~-KG~d~Ll~A~~~l~~--~~v~lvIvG~g~-~~~~~~l~~l~~~~~~~v~~~~ 463 (586)
..+++++ + ++.++++++||+++. ||++.+++|+.++.+ +++++++ |.|+ ..+.+.++++... ..++.+.+
T Consensus 196 ~~~~~~~--~--~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~-~~~v~~~g 269 (375)
T 3beo_A 196 HPVLEKL--G--NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILGD-YGRIHLIE 269 (375)
T ss_dssp CHHHHTT--T--TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHTT-CTTEEEEC
T ss_pred HHHHHhc--c--CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhhc-cCCEEEeC
Confidence 1233333 2 234578899999876 999999999999865 6888655 6664 3345555555322 24688777
Q ss_pred ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-CcCcccccccCcceEEEccccccccCCCCCCHHHH
Q 007873 464 KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAV 542 (586)
Q Consensus 464 ~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~l 542 (586)
.....++..+|+.||++|+|| |.+++|||+||+|||+++ .||..|++.+| +|+++ ++ |+++|
T Consensus 270 ~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v----------~~-d~~~l 332 (375)
T 3beo_A 270 PLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLA----------GT-DEETI 332 (375)
T ss_dssp CCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEEC----------CS-CHHHH
T ss_pred CCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEc----------CC-CHHHH
Confidence 666668889999999999999 788999999999999996 49999999888 99986 65 99999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHhc
Q 007873 543 STTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEEDS 584 (586)
Q Consensus 543 a~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~~ 584 (586)
+++|.+++++ ++.+++|++++. .+.|+|+.+++.+++...
T Consensus 333 a~~i~~ll~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 333 FSLADELLSD--KEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp HHHHHHHHHC--HHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC--hHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 9999999998 888888888763 468999999999988653
No 21
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=5.9e-27 Score=246.73 Aligned_cols=226 Identities=15% Similarity=0.096 Sum_probs=171.6
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
.+.+|.++++|+..++.+.+ +|++.+ ++.+++||+ |...+.+... ......+..+++
T Consensus 139 ~~~~d~ii~~s~~~~~~l~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~-------------~~~~~~~~~~~~ 196 (384)
T 1vgv_A 139 GHLAMYHFSPTETSRQNLLR---ENVADS------RIFITGNTVIDALLWVRDQV-------------MSSDKLRSELAA 196 (384)
T ss_dssp HTTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHHT-------------TTCHHHHHHHHT
T ss_pred HhhccEEEcCcHHHHHHHHH---cCCChh------hEEEeCChHHHHHHhhhhcc-------------ccchhhhHHHHH
Confidence 34599999999999998875 677644 799999995 4322211100 000001235667
Q ss_pred HhC-CCCCCCCcEEEEEecCccc-cCHHHHHHHHhhccc--CCeEEEEE-eCCChhhHHHHHHHHHHCCCceEEEeccCh
Q 007873 393 EVG-LPVDRNIPVIGFIGRLEEQ-KGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (586)
Q Consensus 393 ~~g-l~~~~~~~~i~~iGrl~~~-KG~d~Ll~A~~~l~~--~~v~lvIv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (586)
++| ++.+ +.++++++||+.++ ||++.+++|+.++.+ ++++|+++ |.++ .+.+.++++.... .++.+.+....
T Consensus 197 ~~~~~~~~-~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~-~~~~~l~~~~~~~-~~v~~~g~~~~ 273 (384)
T 1vgv_A 197 NYPFIDPD-KKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNP-NVREPVNRILGHV-KNVILIDPQEY 273 (384)
T ss_dssp TCTTCCTT-SEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCH-HHHHHHHHHHTTC-TTEEEECCCCH
T ss_pred hccccCCC-CCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCH-HHHHHHHHHhhcC-CCEEEeCCCCH
Confidence 777 6432 33578899999876 999999999999865 68999886 4332 3556666664322 46877665555
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC-cCcccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
+++..+|+.||++|+|| |.+++|||+||+|||+++. ||..|++.+| +|+++ ++ |+++|+++|
T Consensus 274 ~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv----------~~-d~~~la~~i 336 (384)
T 1vgv_A 274 LPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLV----------GT-DKQRIVEEV 336 (384)
T ss_dssp HHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEE----------CS-SHHHHHHHH
T ss_pred HHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEe----------CC-CHHHHHHHH
Confidence 77889999999999999 4458999999999999986 9999999888 99997 66 999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 547 RRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 547 ~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
.+++++ ++.+++|++++. .+.|+|+.+++.+++.+
T Consensus 337 ~~ll~d--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 373 (384)
T 1vgv_A 337 TRLLKD--ENEYQAMSRAHNPYGDGQACSRILEALKNNR 373 (384)
T ss_dssp HHHHHC--HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTC
T ss_pred HHHHhC--hHHHhhhhhccCCCcCCCHHHHHHHHHHHHH
Confidence 999998 888899988763 46899999999998754
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=1.1e-26 Score=222.34 Aligned_cols=184 Identities=30% Similarity=0.511 Sum_probs=159.8
Q ss_pred EecCCcccCCcC--CCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCc-cccCHHHHHHHHhhcc
Q 007873 352 GIVNGMDVQEWN--PLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFI 428 (586)
Q Consensus 352 vI~ngvd~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~-~~KG~d~Ll~A~~~l~ 428 (586)
+||||+|.+.|. |... .....+..+++++|++ +.++|+|+||+. +.||++.+++|+..+.
T Consensus 1 gipngvd~~~f~~~~~~~--------------~~~~~~~~~r~~~~~~---~~~~i~~~G~~~~~~K~~~~li~a~~~l~ 63 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTG--------------SRDERKKSLLSKFGMD---EGVTFMFIGRFDRGQKGVDVLLKAIEILS 63 (200)
T ss_dssp ----CCCTTTSSGGGSCS--------------CHHHHHHHHHHHTTCC---SCEEEEEESCBCSSSSCHHHHHHHHHHHT
T ss_pred CCCCccChhhcccccccc--------------chhhHHHHHHHHcCCC---CCCEEEEeeccccccCCHHHHHHHHHHHH
Confidence 489999999998 7641 1122356789999997 336999999999 9999999999999995
Q ss_pred --c--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEE-EeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcE
Q 007873 429 --K--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVP 503 (586)
Q Consensus 429 --~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~-~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~Pv 503 (586)
+ ++++|+|+|.++..+.+.++++..+++ ++.+ .+..+.+++..+|+.||++|+||..|+||++++|||+||+||
T Consensus 64 ~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~Pv 142 (200)
T 2bfw_A 64 SKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 142 (200)
T ss_dssp TSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEE
T ss_pred hhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCE
Confidence 3 689999999988667778888888887 7988 888888889999999999999999999999999999999999
Q ss_pred EEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Q 007873 504 IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA-TYGTQALAEMMKNGM 566 (586)
Q Consensus 504 I~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~-~~~~~~~~~~~~~~~ 566 (586)
|+++.||+.|++ ++.+|+++ +++|+++++++|.++++ + ++.+++|++++.
T Consensus 143 I~~~~~~~~e~~-~~~~g~~~----------~~~~~~~l~~~i~~l~~~~--~~~~~~~~~~a~ 193 (200)
T 2bfw_A 143 IASAVGGLRDII-TNETGILV----------KAGDPGELANAILKALELS--RSDLSKFRENCK 193 (200)
T ss_dssp EEESCHHHHHHC-CTTTCEEE----------CTTCHHHHHHHHHHHHHCC--HHHHHHHHHHHH
T ss_pred EEeCCCChHHHc-CCCceEEe----------cCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHH
Confidence 999999999999 99999998 89999999999999999 8 888999999885
No 23
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.95 E-value=3.7e-26 Score=253.96 Aligned_cols=355 Identities=15% Similarity=0.153 Sum_probs=254.0
Q ss_pred HHHHHHHHHH-hHhhcccCCCCCCCCCCCCEEEEecCCccchHHH-HHHhhccCCCCC-------CCceEEEEEcCCccc
Q 007873 201 SLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-YLKTMYKPKGMY-------KSAKVVFCIHNIAYQ 271 (586)
Q Consensus 201 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~-~l~~~~~~~~~~-------~~~pvv~~iH~~~~~ 271 (586)
.+|+.+.++. ++.+..... .+..-..|| +||+||||+++++. +++......|+- .+..++||+|++.++
T Consensus 273 ~ff~~a~lq~ilr~~~~~~~-~~~~l~~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~e 350 (796)
T 1l5w_A 273 YFQCACSVADILRRHHLAGR-KLHELADYE-VIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPE 350 (796)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CGGGHHHHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGG
T ss_pred HHHHHHHHHHHHHHHHHcCC-ChhhcCCcc-EEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHh
Confidence 4677887875 554321000 000000488 99999999999888 555442111111 378899999999998
Q ss_pred cc--cCcccccccC---------CChhhccc-----------cccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHH
Q 007873 272 GR--FAFEDFGLLN---------LPAQFKSS-----------FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQ 329 (586)
Q Consensus 272 ~~--~~~~~~~~~~---------l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ 329 (586)
+. |+...+..+- ++..|... +.. .+. .....+++++.++..|+.|.+||+.+.+
T Consensus 351 gle~wp~~l~~~~lpr~~~ii~~I~~~f~~~~~~~~~~~~~~~~~-~~i---~~~~~vnMa~lai~~S~~VNgVS~lH~e 426 (796)
T 1l5w_A 351 ALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAK-LAV---VHDKQVHMANLCVVGGFAVNGVAALHSD 426 (796)
T ss_dssp GSCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH-HCS---EETTEEEHHHHHHHHSSEEEESSHHHHH
T ss_pred hhhcCCHHHHHHHhHHHHHHHhccCHHHHHHHHHhcCCcHHHHhh-hhc---ccCCcccHHHHHHHhcCccccccHHHHH
Confidence 85 6555442211 11111000 000 000 0112578889999999999999999999
Q ss_pred HHhcCccCCCcchhhhhccCeeEecCCcccCCc----CCCCccccccccC----------------ccc------ccccc
Q 007873 330 ELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEW----NPLTDKYIGVKYD----------------AST------VMDAK 383 (586)
Q Consensus 330 ~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~----~p~~~~~~~~~~~----------------~~~------~~~~~ 383 (586)
.+... .++ ...+ +.+.++..|.||||+..| +|..++.|...|+ ..+ +.+.|
T Consensus 427 ~ik~~-~f~-~~~~-~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K 503 (796)
T 1l5w_A 427 LVVKD-LFP-EYHQ-LWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIK 503 (796)
T ss_dssp HHHHT-TSH-HHHH-HCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHH
T ss_pred HHHhH-Hhh-HHHH-hCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 98742 222 1111 224589999999999999 7887777777766 333 23567
Q ss_pred HHHHHH----HHHHhCCCCCCCCcEEEEEecCccccCHHH-HHHHHhhccc---------CCeEEEEEeCCChhhHHH--
Q 007873 384 PLLKEA----LQAEVGLPVDRNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTGKKPMEKQ-- 447 (586)
Q Consensus 384 ~~~~~~----l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~-Ll~A~~~l~~---------~~v~lvIvG~g~~~~~~~-- 447 (586)
..+|.+ ++++.|++.+++.+.++++.|+.++||.++ ++..+.++.+ .+++|||.|++.+.++..
T Consensus 504 ~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~ 583 (796)
T 1l5w_A 504 QANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKN 583 (796)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHH
Confidence 777877 589999999999999999999999999999 8888887755 479999999988555444
Q ss_pred ----HHHHHH------HCCC--ceEEEeccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 448 ----LEQLEI------LYPE--KARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 448 ----l~~l~~------~~~~--~v~~~~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.+++. ++++ +|.+...|+...++.++++||++++||+ +|+||+..+-+|.+|++.|++-.|...|
T Consensus 584 iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvE 663 (796)
T 1l5w_A 584 IIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVE 663 (796)
T ss_dssp HHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHH
T ss_pred HHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeee
Confidence 777777 6777 8999999999999999999999999999 9999999999999999999999999998
Q ss_pred cccc--CcceEEEccccccccCCCCCCHHHHH---HHHHHHHHhcC-HHHHHHHHHHHHHhcCCHHHH
Q 007873 514 TVEE--GFTGFQMGSFSVDCEAVDPVDVAAVS---TTVRRALATYG-TQALAEMMKNGMAQDLSWKVS 575 (586)
Q Consensus 514 ~v~~--g~~G~~~~~~~~~~~~v~~~d~~~la---~~I~~ll~~~~-~~~~~~~~~~~~~~~fsw~~~ 575 (586)
+.++ ..|||+|| . +++++. .+..+..+-+. .+.++++..+++...|||+..
T Consensus 664 i~e~vG~~NgF~FG----------~-~~~ev~~l~~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~ 720 (796)
T 1l5w_A 664 IAEKVGEENIFIFG----------H-TVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDK 720 (796)
T ss_dssp HHHHHCGGGSEECS----------C-CHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTTTTCT
T ss_pred hhhccCCCcEEEec----------C-CHHHHHHHHHcccCHHHHhhcCHHHHHHHHHHHcCCCCCCcH
Confidence 8765 47999994 3 666665 33222222110 236788888889999999763
No 24
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.95 E-value=7.8e-27 Score=259.26 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=162.3
Q ss_pred cCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhC
Q 007873 316 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 395 (586)
Q Consensus 316 ~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 395 (586)
.+|.++++|+...+ ++ .++.+|||..++....+... +...++++|
T Consensus 328 ~~d~~i~~s~~~~~-------~~---------~~i~~ipn~~~~~~~~~~~~-------------------~~~~r~~~~ 372 (568)
T 2vsy_A 328 LGDAFALPPALEPF-------YS---------EHVLRLQGAFQPSDTSRVVA-------------------EPPSRTQCG 372 (568)
T ss_dssp EECTTTSCTTTGGG-------CS---------SEEEECSSCSCCCCTTCCCC-------------------CCCCTGGGT
T ss_pred EECCCcCCcccccC-------Cc---------ceeEcCCCcCCCCCCCCCCC-------------------CCCCccccC
Confidence 47888888875432 11 27999999543322111110 112356778
Q ss_pred CCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEe-CCChhhHHHHHHHHHHCC---CceEEEeccChHH
Q 007873 396 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLG-TGKKPMEKQLEQLEILYP---EKARGVAKFNIPL 469 (586)
Q Consensus 396 l~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG-~g~~~~~~~l~~l~~~~~---~~v~~~~~~~~~~ 469 (586)
++.+ ++++++||+.+ ||++.+++|+.++.+ ++++|+|+| +|+ ..+.++++..+++ +++.+.+..+.++
T Consensus 373 ~~~~---~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~--~~~~l~~~~~~~~l~~~~v~~~g~~~~~~ 446 (568)
T 2vsy_A 373 LPEQ---GVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGE--ADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446 (568)
T ss_dssp CCTT---SCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTT--HHHHHHHHHHHTTCCGGGEEEECCCCHHH
T ss_pred CCCC---CEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHH--HHHHHHHHHHHcCCChhHEEeeCCCCHHH
Confidence 8633 35669999999 999999999999855 799999999 776 6677777777654 4688888888788
Q ss_pred HHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEE-------cCCc-------CcccccccCcceEEEccccccccCCC
Q 007873 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV-------ASTG-------GLVDTVEEGFTGFQMGSFSVDCEAVD 535 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~-------s~~g-------g~~e~v~~g~~G~~~~~~~~~~~~v~ 535 (586)
+..+|+.||++|+||.+ ++|++++|||+||+|||+ |+.| |+.|++.+
T Consensus 447 ~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~------------------ 507 (568)
T 2vsy_A 447 YLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA------------------ 507 (568)
T ss_dssp HHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS------------------
T ss_pred HHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC------------------
Confidence 89999999999999999 999999999999999999 9999 88887742
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HhcCCHHHHHHHHHHHh
Q 007873 536 PVDVAAVSTTVRRALATYGTQALAEMMKNGM-----AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 536 ~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~~ 583 (586)
|+++++++|.+++++ ++.+++|++++. .+.|||+.++++|++.+
T Consensus 508 --~~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y 556 (568)
T 2vsy_A 508 --DDAAFVAKAVALASD--PAALTALHARVDVLRRASGVFHMDGFADDFGALL 556 (568)
T ss_dssp --SHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 899999999999998 888889998874 26799999999998865
No 25
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.94 E-value=3.7e-26 Score=253.93 Aligned_cols=361 Identities=14% Similarity=0.133 Sum_probs=255.4
Q ss_pred HHHHHHHHHH-hHhhcccCCCCCCCCCCCCEEEEecCCccchHHH-HHHhhccCCCCC-------CCceEEEEEcCCccc
Q 007873 201 SLLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPC-YLKTMYKPKGMY-------KSAKVVFCIHNIAYQ 271 (586)
Q Consensus 201 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~pDvii~~h~~~~~~~~~-~l~~~~~~~~~~-------~~~pvv~~iH~~~~~ 271 (586)
.+|+.+.++. ++.+..... .+..-..|| +||+||||+++++. +++...-..|+- .+..++||+|++.++
T Consensus 263 ~ff~~a~lq~ilr~~~~~~~-~l~~l~~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~e 340 (796)
T 2c4m_A 263 YFFTSASLQAMIQDHLAHHK-DLSNFAEFH-SVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTE 340 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-CSTTHHHHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSST
T ss_pred HHHHHHHHHHHHHHHHHhCC-ChhhcCCCe-EEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHH
Confidence 4677787875 554311000 000000488 99999999999888 555432111111 367899999999998
Q ss_pred cc--cCccccccc---------CCChhhccccccccC------CCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcC
Q 007873 272 GR--FAFEDFGLL---------NLPAQFKSSFDFIDG------YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSG 334 (586)
Q Consensus 272 ~~--~~~~~~~~~---------~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~ 334 (586)
+. |+...+..+ +++..+.....-..+ .........+++++.++..|+.|.+||+.+.+.+...
T Consensus 341 gle~wp~~l~~~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~ 420 (796)
T 2c4m_A 341 ALEQWDEQIFQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAE 420 (796)
T ss_dssp TSCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHT
T ss_pred HhhhCCHHHHHHHhHHHHHHHcCcCHHHHHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhh
Confidence 85 655544321 111111110000000 0000111257889999999999999999999998852
Q ss_pred ccCCCcchhhhhccCeeEecCCcccCCc----CCCCccccccccC-----------------ccc------cccccHHHH
Q 007873 335 EDKGVELDNIIRKTGIKGIVNGMDVQEW----NPLTDKYIGVKYD-----------------AST------VMDAKPLLK 387 (586)
Q Consensus 335 ~~~g~~~~~~~~~~~i~vI~ngvd~~~~----~p~~~~~~~~~~~-----------------~~~------~~~~~~~~~ 387 (586)
.++ ..-. ..+.++..|.||||+..| +|..++.|...|. ..+ +.+.|..+|
T Consensus 421 -~f~-~~~~-~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK 497 (796)
T 2c4m_A 421 -TLA-DWYA-LWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANK 497 (796)
T ss_dssp -TTH-HHHH-HCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHH
T ss_pred -hhh-hHHH-cCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 232 1111 224589999999999999 7887777766666 333 235677777
Q ss_pred HH----HHHHhCCCCCCCCcEEEEEecCccccCHHH-HHHHHhhccc---------CCeEEEEEeCCChhhHHH------
Q 007873 388 EA----LQAEVGLPVDRNIPVIGFIGRLEEQKGSDI-LAAAIPHFIK---------ENVQIIVLGTGKKPMEKQ------ 447 (586)
Q Consensus 388 ~~----l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~-Ll~A~~~l~~---------~~v~lvIvG~g~~~~~~~------ 447 (586)
.+ ++++.|++.+++.+.++++.|+.++||.++ ++..+.++.+ .+++|||.|++.+.++..
T Consensus 498 ~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~ 577 (796)
T 2c4m_A 498 QDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKL 577 (796)
T ss_dssp HHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHH
Confidence 77 599999999999999999999999999999 8888887753 379999999988555444
Q ss_pred HHHHHH------HCCC--ceEEEeccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc
Q 007873 448 LEQLEI------LYPE--KARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 517 (586)
Q Consensus 448 l~~l~~------~~~~--~v~~~~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~ 517 (586)
+.+++. ++++ +|.+...|+...++.++++||++++||+ +|+||+..+-+|.+|++.|++-.|...|+.++
T Consensus 578 i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~ 657 (796)
T 2c4m_A 578 INSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDS 657 (796)
T ss_dssp HHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHH
T ss_pred HHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhh
Confidence 777877 6777 8999999999999999999999999999 99999999999999999999998999888765
Q ss_pred --CcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcCCHHHH
Q 007873 518 --GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKVS 575 (586)
Q Consensus 518 --g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~-~~~~~~~~~~~~~~~fsw~~~ 575 (586)
..|||+||. ...++.++..+ .+..+-+. .+.++++..+++...|||+..
T Consensus 658 vG~~NgF~FG~--------~~~ev~~l~~~-y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~ 709 (796)
T 2c4m_A 658 VGEENAYIFGA--------RVEELPALRES-YKPYELYETVPGLKRALDALDNGTLNDNNS 709 (796)
T ss_dssp HCGGGSEEESC--------CTTTHHHHHHT-CCHHHHHHHSTTHHHHHHTTTSSSSCCTTC
T ss_pred cCCCcEEEecC--------chhhHHHHHHh-hChHHHhhcCHHHHHHHHHHHcCCCCCCCH
Confidence 479999952 23667777665 33333221 235777777778889999653
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.94 E-value=5.2e-25 Score=237.22 Aligned_cols=289 Identities=13% Similarity=0.139 Sum_probs=211.5
Q ss_pred CCEEEEecCCccchHHHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCCcch
Q 007873 228 EDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 307 (586)
Q Consensus 228 pDvii~~h~~~~~~~~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (586)
.| +|..||+|..++|.+++... ++.++.|.+|...+ ....- ..+|.. ..
T Consensus 150 ~D-~VwVhDYhL~llp~~lR~~~------~~~~igfFlHiPfP-----s~e~f-~~Lp~~------------------~r 198 (496)
T 3t5t_A 150 DP-VYLVHDYQLVGVPALLREQR------PDAPILLFVHIPWP-----SADYW-RILPKE------------------IR 198 (496)
T ss_dssp SC-EEEEESGGGTTHHHHHHHHC------TTSCEEEECCSCCC-----CHHHH-TTSCHH------------------HH
T ss_pred CC-EEEEeCccHhHHHHHHHhhC------CCCeEEEEEcCCCC-----CHHHH-hhCcHh------------------HH
Confidence 46 99999999999999999875 68999999995432 11110 011110 12
Q ss_pred hhhhHHhhcCCEEEEeCHHHHHHHhcCcc--C-CCcchh-------hhhccCeeEecCCcccCCcCCCCccccccccCcc
Q 007873 308 NWMKAGILESDMVLTVSPHYAQELVSGED--K-GVELDN-------IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS 377 (586)
Q Consensus 308 ~~~~~~~~~ad~vitvS~~~~~~l~~~~~--~-g~~~~~-------~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~ 377 (586)
..+..++..+|.|.+.++.+++.+.+.+. . |.+.+. .-+..++.++|+|||++.|.+....
T Consensus 199 ~ell~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~--------- 269 (496)
T 3t5t_A 199 TGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ--------- 269 (496)
T ss_dssp HHHHHHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC---------
T ss_pred HHHHHHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH---------
Confidence 34567788999999999999888664221 1 322110 0122478899999999999775320
Q ss_pred ccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--C---CeEEEEEeCC-----C--hhhH
Q 007873 378 TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E---NVQIIVLGTG-----K--KPME 445 (586)
Q Consensus 378 ~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~---~v~lvIvG~g-----~--~~~~ 445 (586)
. ...++++++ +.++|+++||+++.||++.+++|+ ++.+ + ++.|+++|.. + ..++
T Consensus 270 ----~----~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~ 335 (496)
T 3t5t_A 270 ----L----PEGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYV 335 (496)
T ss_dssp ----C----CTTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHH
T ss_pred ----H----HHHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHH
Confidence 0 145677776 358999999999999999999999 7754 4 4678888742 2 2345
Q ss_pred HHHHHHHHHCCC-----ceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcC---CcEEEcCCcCccccccc
Q 007873 446 KQLEQLEILYPE-----KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG---TVPIVASTGGLVDTVEE 517 (586)
Q Consensus 446 ~~l~~l~~~~~~-----~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G---~PvI~s~~gg~~e~v~~ 517 (586)
+++++++.+.+. .|.+.+..+.+++..+|+.||++++||..|+||++.+|||||| .|+|+|..+|..+.+.
T Consensus 336 ~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~- 414 (496)
T 3t5t_A 336 HRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLG- 414 (496)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG-
T ss_pred HHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC-
Confidence 666666554321 4777777788889999999999999999999999999999997 8999999999888884
Q ss_pred CcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 007873 518 GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 518 g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~~ 583 (586)
.+|+++ +|.|++++|++|.++|+++ ++.++++.++.+ .+.++++.-++.+++..
T Consensus 415 -~~allV----------nP~D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L 470 (496)
T 3t5t_A 415 -EYCRSV----------NPFDLVEQAEAISAALAAG-PRQRAEAAARRRDAARPWTLEAWVQAQLDGL 470 (496)
T ss_dssp -GGSEEE----------CTTBHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCBHHHHHHHHHHHH
T ss_pred -CCEEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 379998 9999999999999999974 344455555443 47788888888887754
No 27
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=3e-25 Score=205.96 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=136.1
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.++|+|+||+.++||++.+++|+..+.+ ++++|+|+|+|+ ..+.++++..+++.++.+ +..+.+++..+|+.||++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~ 78 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGP--DEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLY 78 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCST--THHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCc--cHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEE
Confidence 3789999999999999999999999965 799999999988 567778887777766766 666788899999999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCC-cEEE-cCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGT-VPIV-ASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 558 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~-PvI~-s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~ 558 (586)
++||..|+||++++|||+||+ |||+ ++.|+..|++.++.+ ++ +++|+++++++|.+++++ ++.+
T Consensus 79 v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~----------~~~~~~~l~~~i~~l~~~--~~~~ 144 (166)
T 3qhp_A 79 VHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LF----------EPNNAKDLSAKIDWWLEN--KLER 144 (166)
T ss_dssp EECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EE----------CTTCHHHHHHHHHHHHHC--HHHH
T ss_pred EECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EE----------cCCCHHHHHHHHHHHHhC--HHHH
Confidence 999999999999999999998 9999 568999999998766 44 899999999999999998 8888
Q ss_pred HHHHHHHH--HhcCCHHHHHHH
Q 007873 559 AEMMKNGM--AQDLSWKVSIGT 578 (586)
Q Consensus 559 ~~~~~~~~--~~~fsw~~~a~~ 578 (586)
+++++++. .++|||+.++++
T Consensus 145 ~~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 145 ERMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHCChhhhhcC
Confidence 99998884 588999998764
No 28
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.91 E-value=6.1e-24 Score=237.02 Aligned_cols=329 Identities=16% Similarity=0.161 Sum_probs=238.5
Q ss_pred CCCEEEEecCCccchHHH-HHHhhccCCCCC-------CCceEEEEEcCCccccc--cCcccccccC---------CChh
Q 007873 227 GEDVVFVANDWHTSLIPC-YLKTMYKPKGMY-------KSAKVVFCIHNIAYQGR--FAFEDFGLLN---------LPAQ 287 (586)
Q Consensus 227 ~pDvii~~h~~~~~~~~~-~l~~~~~~~~~~-------~~~pvv~~iH~~~~~~~--~~~~~~~~~~---------l~~~ 287 (586)
.|| +||+||||+++++. +++...-..|+- ....++||+|++.++|. |+...+..+- ++..
T Consensus 320 ~p~-viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~lLPr~~~ii~~in~~ 398 (824)
T 2gj4_A 320 DKV-AIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQR 398 (824)
T ss_dssp HHE-EEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCc-EEEccCCchHhHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEeCCChHHHhhhchHHHHHHhCchHHHHHHHHHHH
Confidence 478 99999999999888 565433111110 23459999999999997 7665553321 1111
Q ss_pred hccc-----------cccccCCCCCcCCcchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCC
Q 007873 288 FKSS-----------FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG 356 (586)
Q Consensus 288 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ng 356 (586)
|... +......+.. ....+++++.++..|+.|.+||+.+.+.+... .++ +.-. ..+.++..|.||
T Consensus 399 f~~~~~~~~~~~~~~~~~~~~i~~~-~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~-~f~-~~~~-~~p~k~~~iTNG 474 (824)
T 2gj4_A 399 FLNRVAAAFPGDVDRLRRMSLVEEG-AVKRINMAHLCIAGSHAVNGVARIHSEILKKT-IFK-DFYE-LEPHKFQNKTNG 474 (824)
T ss_dssp HHHHHHHHSTTCHHHHHHHCSEECS-SSCEEEHHHHHHHTCSCEEESSHHHHHHHHHT-TTH-HHHH-HCGGGEEECCCC
T ss_pred HHHHHHHHcCCcHHHHHhhhhhhhc-CCCcccHHHHHHHhcCceeeEcHHHHHHHhhH-HhH-HHHH-cChhhcccccCC
Confidence 1000 0000110100 12357889999999999999999999998642 232 1111 124589999999
Q ss_pred cccCCc----CCCCccccccc-----------------cCc-cccc----cccHHHHHH----HHHHhCCCCCCCCcEEE
Q 007873 357 MDVQEW----NPLTDKYIGVK-----------------YDA-STVM----DAKPLLKEA----LQAEVGLPVDRNIPVIG 406 (586)
Q Consensus 357 vd~~~~----~p~~~~~~~~~-----------------~~~-~~~~----~~~~~~~~~----l~~~~gl~~~~~~~~i~ 406 (586)
||+..| +|..++.|... |.. .+.. +.|..+|.+ ++++.|++.+++.++++
T Consensus 475 I~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g 554 (824)
T 2gj4_A 475 ITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDV 554 (824)
T ss_dssp BCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEE
T ss_pred cChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEe
Confidence 999999 78766555533 664 3332 456667776 89999999999999999
Q ss_pred EEecCccccCHHHH-HHHHhhcc---c-C-----CeEEEEEeCCChhhHHH------HHHHHHHC------CC--ceEEE
Q 007873 407 FIGRLEEQKGSDIL-AAAIPHFI---K-E-----NVQIIVLGTGKKPMEKQ------LEQLEILY------PE--KARGV 462 (586)
Q Consensus 407 ~iGrl~~~KG~d~L-l~A~~~l~---~-~-----~v~lvIvG~g~~~~~~~------l~~l~~~~------~~--~v~~~ 462 (586)
++.|+.++||.+++ +..+.++. + + +++|||.|++.+.++.. +.+++..+ ++ ++.+.
T Consensus 555 ~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl 634 (824)
T 2gj4_A 555 QVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFL 634 (824)
T ss_dssp EESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEE
T ss_pred eeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEE
Confidence 99999999999998 88888774 2 2 68999999988555444 77777655 55 79999
Q ss_pred eccChHHHHHHHHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCcccccc--cCcceEEEccccccccCCCCCC
Q 007873 463 AKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVD 538 (586)
Q Consensus 463 ~~~~~~~~~~~l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~--~g~~G~~~~~~~~~~~~v~~~d 538 (586)
..|+...++.++++||++++||+ +|+||+..+-||.+|++.|++--|...|+.+ ...|||+|| . .
T Consensus 635 ~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG----------~-~ 703 (824)
T 2gj4_A 635 ENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFG----------M-R 703 (824)
T ss_dssp TTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECS----------C-C
T ss_pred CCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeC----------C-c
Confidence 99999999999999999999999 9999999999999999999999998888875 357999994 2 2
Q ss_pred HHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhcCCHHH
Q 007873 539 VAAVSTTVR-------RALATYGTQALAEMMKNGMAQDLSWKV 574 (586)
Q Consensus 539 ~~~la~~I~-------~ll~~~~~~~~~~~~~~~~~~~fsw~~ 574 (586)
++++ ..+. .+.+. .+.++++..+.+...|||..
T Consensus 704 ~~ev-~~l~~~~~~a~~~Y~~--~~~l~~v~d~i~~g~fs~~~ 743 (824)
T 2gj4_A 704 VEDV-DRLDQRGYNAQEYYDR--IPELRQIIEQLSSGFFSPKQ 743 (824)
T ss_dssp HHHH-HHHHHHCCCHHHHHHH--CHHHHHHHHHHHHTTTCTTS
T ss_pred HHHH-HHHHHcCCCHHHHhcC--CHHHHHHHHHHHhCCCCCCC
Confidence 5555 3331 23333 35677777788889999865
No 29
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.90 E-value=2.1e-22 Score=211.65 Aligned_cols=211 Identities=14% Similarity=0.066 Sum_probs=152.5
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
...+|.++++|+..++.+.+ +|++.+ ++.+++|++ |...+.+. +..+++
T Consensus 144 ~~~~~~~~~~s~~~~~~l~~---~g~~~~------ki~vi~n~~~d~~~~~~~---------------------~~~~~~ 193 (376)
T 1v4v_A 144 DVLTDLDFAPTPLAKANLLK---EGKREE------GILVTGQTGVDAVLLAAK---------------------LGRLPE 193 (376)
T ss_dssp HHHCSEEEESSHHHHHHHHT---TTCCGG------GEEECCCHHHHHHHHHHH---------------------HCCCCT
T ss_pred HHHhceeeCCCHHHHHHHHH---cCCCcc------eEEEECCchHHHHhhhhh---------------------hhHHHH
Confidence 45699999999999999886 577644 899999975 42211100 000111
Q ss_pred HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEE-eCCChhhHHHHHHHHHHCCCceEEEeccChHH
Q 007873 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 469 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~ 469 (586)
++ + ++.++++++||+...||++.+++|+.++.+ ++++++++ |++. ...+.++++... .+++.+.+.....+
T Consensus 194 ~~--~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~-~~~~~l~~~~~~-~~~v~~~g~~g~~~ 267 (376)
T 1v4v_A 194 GL--P--EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP-VVREAVFPVLKG-VRNFVLLDPLEYGS 267 (376)
T ss_dssp TC--C--SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH-HHHHHHHHHHTT-CTTEEEECCCCHHH
T ss_pred hc--C--CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH-HHHHHHHHHhcc-CCCEEEECCCCHHH
Confidence 11 1 234577889999999999999999999865 68998886 6554 245666666432 23687776555557
Q ss_pred HHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHH
Q 007873 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ 548 (586)
+..+|+.||++|.|| | |+ ++|||+||+|||++ +.+|..+++.++ +|+++ + .|+++|+++|.+
T Consensus 268 ~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv----------~-~d~~~la~~i~~ 330 (376)
T 1v4v_A 268 MAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLA----------G-TDPEGVYRVVKG 330 (376)
T ss_dssp HHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEEC----------C-SCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEEC----------C-CCHHHHHHHHHH
Confidence 788999999999999 2 44 88999999999998 578999988665 89885 4 599999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCH----HHHHHHHHH
Q 007873 549 ALATYGTQALAEMMKNGMAQDLSW----KVSIGTVQE 581 (586)
Q Consensus 549 ll~~~~~~~~~~~~~~~~~~~fsw----~~~a~~~~~ 581 (586)
++++ ++.+++|++++ +.|.| +.+++.+.+
T Consensus 331 ll~d--~~~~~~~~~~~--~~~~~~~~~~~i~~~i~~ 363 (376)
T 1v4v_A 331 LLEN--PEELSRMRKAK--NPYGDGKAGLMVARGVAW 363 (376)
T ss_dssp HHTC--HHHHHHHHHSC--CSSCCSCHHHHHHHHHHH
T ss_pred HHhC--hHhhhhhcccC--CCCCCChHHHHHHHHHHH
Confidence 9998 88888888643 44444 455554444
No 30
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.88 E-value=9.7e-22 Score=184.93 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=125.1
Q ss_pred CCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCCh--hhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 400 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 400 ~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~--~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
++.++|+|+|++.+.||++.+++|+..+ ++++|+|+|.|+. .+++.++++...+++++.+.+..+.+++..+|+.|
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 3558999999999999999999999998 7899999999873 34444443334466689999999999999999999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
|++++||..|++|++++|||+||+|||+++.|++.|++.++.+|++ + +.|+++++++|.+++++.
T Consensus 99 di~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~----------~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 99 KGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYL----------V-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp SEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEE----------E-CSCHHHHHHHHHHHHHCT
T ss_pred CEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEE----------e-CCCHHHHHHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999997 3 789999999999999983
No 31
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.87 E-value=6.9e-21 Score=200.88 Aligned_cols=199 Identities=13% Similarity=0.045 Sum_probs=146.3
Q ss_pred hhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHH
Q 007873 309 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 388 (586)
Q Consensus 309 ~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (586)
+++..++.+|.++++|+..++.+.+ +|++ ++.+|+|+. |.+....
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~l~~---~g~~--------ki~vi~n~~----f~~~~~~-------------------- 190 (374)
T 2xci_A 146 IEKILSKKFDLIIMRTQEDVEKFKT---FGAK--------RVFSCGNLK----FICQKGK-------------------- 190 (374)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHT---TTCC--------SEEECCCGG----GCCCCCS--------------------
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH---cCCC--------eEEEcCCCc----cCCCcCh--------------------
Confidence 4566788999999999999999986 5654 688999973 2221100
Q ss_pred HHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEE-----
Q 007873 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG----- 461 (586)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~----- 461 (586)
++ .+ ..+++++.|+ ..||++.|++|++++.+ ++++|+|+|+|+. ..+.++++..+.+-....
T Consensus 191 --~~--~l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~-~~~~l~~~~~~~gl~~~~~~~~~ 259 (374)
T 2xci_A 191 --GI--KL----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE-NAKIFEKKARDFGFKTSFFENLE 259 (374)
T ss_dssp --CC--CC----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG-GHHHHHHHHHHTTCCEEETTCCC
T ss_pred --hh--hh----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH-HHHHHHHHHHHCCCceEEecCCC
Confidence 00 01 1257777775 46899999999999865 6899999999873 224566666665522110
Q ss_pred -EeccC--hHHHHHHHHhccEEEEcCCC-CCCcHHHHHHHHcCCcEEEc-CCcCcccccccC-cceEEEccccccccCCC
Q 007873 462 -VAKFN--IPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEG-FTGFQMGSFSVDCEAVD 535 (586)
Q Consensus 462 -~~~~~--~~~~~~~l~~aDi~l~PS~~-E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g-~~G~~~~~~~~~~~~v~ 535 (586)
.+.+. .+++..+|+.||++++||.+ |.+|++++||||||+|||++ +.++..|++.+. .+|+++ .
T Consensus 260 ~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~----------~ 329 (374)
T 2xci_A 260 GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGF----------E 329 (374)
T ss_dssp SSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEE----------E
T ss_pred CcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEE----------E
Confidence 11221 25577899999999888765 67899999999999999986 789999988763 578877 7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007873 536 PVDVAAVSTTVRRALATYGTQALAEMMKNGM 566 (586)
Q Consensus 536 ~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 566 (586)
++|+++|+++|.+++++ +.+++|+++++
T Consensus 330 ~~d~~~La~ai~~ll~d---~~r~~mg~~ar 357 (374)
T 2xci_A 330 VKNETELVTKLTELLSV---KKEIKVEEKSR 357 (374)
T ss_dssp CCSHHHHHHHHHHHHHS---CCCCCHHHHHH
T ss_pred eCCHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence 89999999999999985 34566777765
No 32
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.85 E-value=2e-19 Score=186.60 Aligned_cols=247 Identities=16% Similarity=0.080 Sum_probs=171.3
Q ss_pred CCCEEEEecC-CccchH-HHHHHhhccCCCCCCCceEEEEEcCCccccccCcccccccCCChhhccccccccCCCCCcCC
Q 007873 227 GEDVVFVAND-WHTSLI-PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 304 (586)
Q Consensus 227 ~pDvii~~h~-~~~~~~-~~~l~~~~~~~~~~~~~pvv~~iH~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 304 (586)
++|+||+.+. |++... ..++++..+ .++|+++++||+.+.. +. . . .
T Consensus 74 ~~DvIi~q~P~~~~~~~~~~~~~~lk~-----~~~k~i~~ihDl~pl~-~~----------~-------------~---~ 121 (339)
T 3rhz_A 74 HGDVVIFQTPTWNTTEFDEKLMNKLKL-----YDIKIVLFIHDVVPLM-FS----------G-------------N---F 121 (339)
T ss_dssp TTCEEEEEECCSSCHHHHHHHHHHHTT-----SSCEEEEEESCCHHHH-CG----------G-------------G---G
T ss_pred CCCEEEEeCCCcchhhHHHHHHHHHHh-----cCCEEEEEecccHHhh-Cc----------c-------------c---h
Confidence 5895554333 433333 334444321 3899999999986521 10 0 0 0
Q ss_pred cchhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccH
Q 007873 305 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384 (586)
Q Consensus 305 ~~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (586)
.....++..++.||.|+++|+.+++.+.+ +|++.+ ++.++++. |.. .+..
T Consensus 122 ~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~---~G~~~~------ki~~~~~~-~~~--~~~~------------------ 171 (339)
T 3rhz_A 122 YLMDRTIAYYNKADVVVAPSQKMIDKLRD---FGMNVS------KTVVQGMW-DHP--TQAP------------------ 171 (339)
T ss_dssp GGHHHHHHHHTTCSEEEESCHHHHHHHHH---TTCCCS------EEEECCSC-CCC--CCCC------------------
T ss_pred hhHHHHHHHHHHCCEEEECCHHHHHHHHH---cCCCcC------ceeecCCC-Ccc--Cccc------------------
Confidence 12235677899999999999999999986 676533 45433332 111 0100
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEec
Q 007873 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 464 (586)
Q Consensus 385 ~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~ 464 (586)
+....+.++|+|+|+++....+ ..+ .++++|+|+|+|+.. +++ ++.+.+.
T Consensus 172 -----------~~~~~~~~~i~yaG~l~k~~~L-------~~l-~~~~~f~ivG~G~~~----------~l~-nV~f~G~ 221 (339)
T 3rhz_A 172 -----------MFPAGLKREIHFPGNPERFSFV-------KEW-KYDIPLKVYTWQNVE----------LPQ-NVHKINY 221 (339)
T ss_dssp -----------CCCCEEEEEEEECSCTTTCGGG-------GGC-CCSSCEEEEESCCCC----------CCT-TEEEEEC
T ss_pred -----------ccccCCCcEEEEeCCcchhhHH-------HhC-CCCCeEEEEeCCccc----------CcC-CEEEeCC
Confidence 0011244799999999953322 222 378999999999842 244 7999999
Q ss_pred cChHHHHHHHHhccEEEEcCCC-------CCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCC
Q 007873 465 FNIPLAHMIIAGADFILIPSRF-------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPV 537 (586)
Q Consensus 465 ~~~~~~~~~l~~aDi~l~PS~~-------E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~ 537 (586)
++.++++.+++.+|+.+++... ..+|.+++||||||+|||+++.+++.|++.++.+|+++ .
T Consensus 222 ~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~------------~ 289 (339)
T 3rhz_A 222 RPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIV------------K 289 (339)
T ss_dssp CCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEE------------S
T ss_pred CCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEe------------C
Confidence 9999999999999999886211 35799999999999999999999999999999999987 3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhcCCHHHHHHHHHH
Q 007873 538 DVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKVSIGTVQE 581 (586)
Q Consensus 538 d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~ 581 (586)
+.+++++.|..+. ++.+++|++|+. ++.++|....++.+.
T Consensus 290 ~~~e~~~~i~~l~----~~~~~~m~~na~~~a~~~~~~~f~k~~l~ 331 (339)
T 3rhz_A 290 DVEEAIMKVKNVN----EDEYIELVKNVRSFNPILRKGFFTRRLLT 331 (339)
T ss_dssp SHHHHHHHHHHCC----HHHHHHHHHHHHHHTHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 6889998888763 457899999985 355666666655544
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.80 E-value=8.2e-18 Score=179.05 Aligned_cols=218 Identities=12% Similarity=0.107 Sum_probs=156.0
Q ss_pred hcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCC-cccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 315 ~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ng-vd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
+.+|.+++.|+..++.+.+ .|++.+ ++.++.|. +|...+.+.... +...+++
T Consensus 168 ~~a~~~~~~se~~~~~l~~---~Gi~~~------~i~vvGn~~~D~~~~~~~~~~------------------~~~~~~~ 220 (403)
T 3ot5_A 168 VMADIHFSPTKQAKENLLA---EGKDPA------TIFVTGNTAIDALKTTVQKDY------------------HHPILEN 220 (403)
T ss_dssp HHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHSCTTC------------------CCHHHHS
T ss_pred HhcCEEECCCHHHHHHHHH---cCCCcc------cEEEeCCchHHHHHhhhhhhc------------------chHHHHh
Confidence 3589999999999999986 687755 89999884 565444322100 0122333
Q ss_pred hCCCCCCCCcEEEEEecCcc-ccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 394 VGLPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~-~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
+ + ++..++++.||.+. .|+++.+++|+.++.+ +++++++.+.......+.+++.... ..++.........+.
T Consensus 221 l--~--~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~~v~l~~~l~~~~~ 295 (403)
T 3ot5_A 221 L--G--DNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGG-HERIHLIEPLDAIDF 295 (403)
T ss_dssp C--T--TCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTT-CTTEEEECCCCHHHH
T ss_pred c--c--CCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCC-CCCEEEeCCCCHHHH
Confidence 3 2 23355667777654 4789999999999865 7899998743222345556554322 236777776666778
Q ss_pred HHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
..+++.||+++.+| |.+.+|||++|+|+|+. +.++..|.+..| +|+++ .+ |+++++++|.++
T Consensus 296 ~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv----------~~-d~~~l~~ai~~l 358 (403)
T 3ot5_A 296 HNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLI----------GT-NKENLIKEALDL 358 (403)
T ss_dssp HHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEEC----------CS-CHHHHHHHHHHH
T ss_pred HHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEc----------CC-CHHHHHHHHHHH
Confidence 88999999999887 56669999999999999 688888988766 88885 44 999999999999
Q ss_pred HHhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 550 LATYGTQALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 550 l~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
+++ ++.+++|++++ +....+++.+++.+.+..
T Consensus 359 l~~--~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l 392 (403)
T 3ot5_A 359 LDN--KESHDKMAQAANPYGDGFAANRILAAIKSHF 392 (403)
T ss_dssp HHC--HHHHHHHHHSCCTTCCSCHHHHHHHHHHHHH
T ss_pred HcC--HHHHHHHHhhcCcccCCcHHHHHHHHHHHHh
Confidence 998 88888887754 234556667776665543
No 34
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.80 E-value=1.2e-18 Score=185.03 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=121.0
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEE
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 481 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l 481 (586)
..++++.|++. .++.+.+.+++..+.+.++++++++++.. ..+.++ ..+.++.+.+..+ ...+|+.||++|
T Consensus 243 ~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~l~----~~~~~v~~~~~~~---~~~~l~~ad~~v 313 (412)
T 3otg_A 243 PLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSL-DVSGLG----EVPANVRLESWVP---QAALLPHVDLVV 313 (412)
T ss_dssp CEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSC-CCTTCC----CCCTTEEEESCCC---HHHHGGGCSEEE
T ss_pred CEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCC-Chhhhc----cCCCcEEEeCCCC---HHHHHhcCcEEE
Confidence 35677888886 78888888888888666788877766542 111221 2345677766553 567999999999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCCc----CcccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHHHhcCH
Q 007873 482 IPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATYGT 555 (586)
Q Consensus 482 ~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll~~~~~ 555 (586)
.++ .+.+++|||++|+|+|+...+ +..+.+.+..+|+++ .++ |+++|+++|.+++++ +
T Consensus 314 ~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~----------~~~~~~~~~l~~ai~~ll~~--~ 377 (412)
T 3otg_A 314 HHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHL----------LPDNISPDSVSGAAKRLLAE--E 377 (412)
T ss_dssp ESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------CGGGCCHHHHHHHHHHHHHC--H
T ss_pred ECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHHHHHHHHhC--H
Confidence 765 348999999999999996654 478888888899987 666 999999999999998 7
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 556 QALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 556 ~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
+.+++|++++ +.+.++|+.+++.+++..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 407 (412)
T 3otg_A 378 SYRAGARAVAAEIAAMPGPDEVVRLLPGFA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 7888888776 357789999999988764
No 35
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.79 E-value=5.2e-18 Score=180.19 Aligned_cols=222 Identities=14% Similarity=0.057 Sum_probs=154.6
Q ss_pred hhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHHH
Q 007873 314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 392 (586)
Q Consensus 314 ~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 392 (586)
-+.+|.+++.|+..++.+.+ .|++.+ ++.++.|.+ |...+.+... +.....+.++++
T Consensus 164 ~~~a~~~~~~se~~~~~l~~---~G~~~~------ki~vvGn~~~d~~~~~~~~~-------------~~~~~~~~~~r~ 221 (396)
T 3dzc_A 164 AALTQYHFAPTDTSRANLLQ---ENYNAE------NIFVTGNTVIDALLAVREKI-------------HTDMDLQATLES 221 (396)
T ss_dssp HHTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHHH-------------HHCHHHHHHHHH
T ss_pred HHhcCEEECCCHHHHHHHHH---cCCCcC------cEEEECCcHHHHHHHhhhhc-------------ccchhhHHHHHH
Confidence 35789999999999999986 688755 889998854 4322211000 000111367788
Q ss_pred HhC-CCCCCCCcEEEEEecCc-cccCHHHHHHHHhhccc--CCeEEEEE-eCCChhhHHHHHHHHHHCCCceEEEeccCh
Q 007873 393 EVG-LPVDRNIPVIGFIGRLE-EQKGSDILAAAIPHFIK--ENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNI 467 (586)
Q Consensus 393 ~~g-l~~~~~~~~i~~iGrl~-~~KG~d~Ll~A~~~l~~--~~v~lvIv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 467 (586)
++| ++.+. ..++++.+|.+ ..|+++.+++|+.++.+ ++++|++. |.++ ...+.++++... ..++........
T Consensus 222 ~lg~l~~~~-~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~-~~~~~l~~~~~~-~~~v~~~~~lg~ 298 (396)
T 3dzc_A 222 QFPMLDASK-KLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNP-NVREPVNKLLKG-VSNIVLIEPQQY 298 (396)
T ss_dssp TCTTCCTTS-EEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCH-HHHHHHHHHTTT-CTTEEEECCCCH
T ss_pred HhCccCCCC-CEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCCh-HHHHHHHHHHcC-CCCEEEeCCCCH
Confidence 898 44322 23444555654 35789999999999865 78999885 5443 345556554322 235776655555
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
.+...+|+.||++|.+| |.+++|||++|+|+|++ +.++..|++.+| +++++ +.|+++|+++|
T Consensus 299 ~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv-----------~~d~~~l~~ai 361 (396)
T 3dzc_A 299 LPFVYLMDRAHIILTDS-----GGIQEEAPSLGKPVLVMRETTERPEAVAAG-TVKLV-----------GTNQQQICDAL 361 (396)
T ss_dssp HHHHHHHHHCSEEEESC-----SGGGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEEC-----------TTCHHHHHHHH
T ss_pred HHHHHHHHhcCEEEECC-----ccHHHHHHHcCCCEEEccCCCcchHHHHcC-ceEEc-----------CCCHHHHHHHH
Confidence 56778999999999998 34459999999999999 688888998887 56764 34899999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007873 547 RRALATYGTQALAEMMKNGMAQDLSWKVSIGTVQE 581 (586)
Q Consensus 547 ~~ll~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 581 (586)
.+++++ ++.+++|++++ ..|.....++++.+
T Consensus 362 ~~ll~d--~~~~~~m~~~~--~~~~~~~aa~ri~~ 392 (396)
T 3dzc_A 362 SLLLTD--PQAYQAMSQAH--NPYGDGKACQRIAD 392 (396)
T ss_dssp HHHHHC--HHHHHHHHTSC--CTTCCSCHHHHHHH
T ss_pred HHHHcC--HHHHHHHhhcc--CCCcCChHHHHHHH
Confidence 999998 88888888764 33544445555443
No 36
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.71 E-value=6.3e-15 Score=154.68 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=110.8
Q ss_pred cEEEEEecCccccCHHHHHHHHhhccc-CCeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.++++.|++...+..+.+.+++..+.. .++++++ +|.+. .+ .+.+...+.+.++.... |. +++.++|+.||++
T Consensus 182 ~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~--~~-~~~~~~~~~~~~~~v~~-f~-~dm~~~l~~aDlv 256 (365)
T 3s2u_A 182 NLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQH--AE-ITAERYRTVAVEADVAP-FI-SDMAAAYAWADLV 256 (365)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTT--HH-HHHHHHHHTTCCCEEES-CC-SCHHHHHHHCSEE
T ss_pred EEEEECCcCCccccchhhHHHHHhcccccceEEEEecCccc--cc-cccceeccccccccccc-ch-hhhhhhhccceEE
Confidence 345556788888989999999999865 4566554 44443 33 33344445555555443 32 3466799999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCc--------ccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGL--------VDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 550 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~--------~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll 550 (586)
|.-+ -++++.|+|++|+|+|....+.. .+.+.+...|+++ +.. ++++|+++|.+++
T Consensus 257 I~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l----------~~~~~~~~~L~~~i~~ll 322 (365)
T 3s2u_A 257 ICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLL----------PQKSTGAAELAAQLSEVL 322 (365)
T ss_dssp EECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred EecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEe----------ecCCCCHHHHHHHHHHHH
Confidence 9533 37889999999999998875432 2345566678876 443 5899999999999
Q ss_pred HhcCHHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 007873 551 ATYGTQALAEMMKNGMA--QDLSWKVSIGTVQEE 582 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~~ 582 (586)
+| ++.+++|++++.+ .....+.+++.+++.
T Consensus 323 ~d--~~~~~~m~~~a~~~~~~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 323 MH--PETLRSMADQARSLAKPEATRTVVDACLEV 354 (365)
T ss_dssp HC--THHHHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99 8899999999863 445667777777653
No 37
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.69 E-value=3e-16 Score=166.09 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=104.9
Q ss_pred CCcEEEEEecCcccc----------CHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHH
Q 007873 401 NIPVIGFIGRLEEQK----------GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLA 470 (586)
Q Consensus 401 ~~~~i~~iGrl~~~K----------G~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 470 (586)
..+++++.|++...| .++.+++++..+ ++++++++++.. .+.++ ..+.++......+ .
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~---~ 294 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL---GFEVVVAVSDKL--AQTLQ----PLPEGVLAAGQFP---L 294 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG---TCEEEECCCC--------------CCTTEEEESCCC---H
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC---CCEEEEEeCCcc--hhhhc----cCCCcEEEeCcCC---H
Confidence 346778889996544 467777777665 789998887752 22332 3456787776553 4
Q ss_pred HHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCCcCcccccccCcceEEEccccccccCCCCC--CHHHHHH
Q 007873 471 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVST 544 (586)
Q Consensus 471 ~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~----s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~ 544 (586)
..+++.||++|. ++-+.+++|||++|+|+|+ .+..+..+.+.+..+|+++ ++. |+++|++
T Consensus 295 ~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~ 360 (398)
T 4fzr_A 295 SAIMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEV----------PWEQAGVESVLA 360 (398)
T ss_dssp HHHGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEEC----------C-------CHHH
T ss_pred HHHHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHH
Confidence 569999999995 4557899999999999999 5555788888899999986 665 7899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 007873 545 TVRRALATYGTQALAEMMKNG--MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 545 ~I~~ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~ 581 (586)
+|.+++++ ++.+++|++.+ +....+|+.+++.+++
T Consensus 361 ai~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 361 ACARIRDD--SSYVGNARRLAAEMATLPTPADIVRLIEQ 397 (398)
T ss_dssp HHHHHHHC--THHHHHHHHHHHHHTTSCCHHHHHHHHTC
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 99999998 77777777766 4578999999987753
No 38
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.68 E-value=2.2e-15 Score=161.05 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=111.9
Q ss_pred CCcEEEEEecCccccCHHHHHHHHhhccc-CCeEE-EEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhcc
Q 007873 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 478 (586)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~-~~v~l-vIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 478 (586)
+.+++++.|++. .++.+.+.+++..+.+ +++++ +++|.+.. .+.++ .++.++...+..+.. .+|+.||
T Consensus 232 ~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~--~~~l~----~~~~~v~~~~~~~~~---~~l~~ad 301 (430)
T 2iyf_A 232 EKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVT--PAELG----ELPDNVEVHDWVPQL---AILRQAD 301 (430)
T ss_dssp SEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---C--GGGGC----SCCTTEEEESSCCHH---HHHTTCS
T ss_pred CCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC--hHHhc----cCCCCeEEEecCCHH---HHhhccC
Confidence 346788999998 5666665555555544 57888 47887752 11221 245567766655543 6899999
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHHHh
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALAT 552 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll~~ 552 (586)
++|..+ -+++++|||++|+|+|++..++ ..+.+.+...|+.+ +++ |+++|+++|.+++++
T Consensus 302 ~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 302 LFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL----------ATEEATADLLRETALALVDD 367 (430)
T ss_dssp EEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CCC-CCHHHHHHHHHHHHHC
T ss_pred EEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEc----------CCCCCCHHHHHHHHHHHHcC
Confidence 999754 2379999999999999998765 46667777889986 655 899999999999998
Q ss_pred cCHHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 007873 553 YGTQALAEMMKNG--MAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 553 ~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~ 582 (586)
++.++++++.+ +.+..+++.+++.+++.
T Consensus 368 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 397 (430)
T 2iyf_A 368 --PEVARRLRRIQAEMAQEGGTRRAADLIEAE 397 (430)
T ss_dssp --HHHHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77777777665 34568999999988764
No 39
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.61 E-value=1.2e-14 Score=153.23 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=113.2
Q ss_pred CcEEEEEecCccccCH-HHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 402 IPVIGFIGRLEEQKGS-DILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~-d~Ll~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
..++++.|++...|+. ..+++++.+..+ ++++++++|++.. .+.++ ..+.++......+.. .+++.||+
T Consensus 219 ~~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~ad~ 289 (391)
T 3tsa_A 219 RRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEH--RALLT----DLPDNARIAESVPLN---LFLRTCEL 289 (391)
T ss_dssp EEEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGG--GGGCT----TCCTTEEECCSCCGG---GTGGGCSE
T ss_pred CEEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcc--hhhcc----cCCCCEEEeccCCHH---HHHhhCCE
Confidence 3566677998765443 555555444433 5899999987752 11221 344567766554433 46799999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEE----cCCcCcccccccCcceEEEccccccccCCCC----CCHHHHHHHHHHHHH
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP----VDVAAVSTTVRRALA 551 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~----s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~----~d~~~la~~I~~ll~ 551 (586)
+|. ++-+++++|||++|+|+|+ .+..+..+.+.+...|+++ .+ .|+++|+++|.++++
T Consensus 290 ~v~----~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 290 VIC----AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICL----------PDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp EEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEEC----------CSHHHHTCHHHHHHHHHHHHT
T ss_pred EEe----CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEec----------CcccccCCHHHHHHHHHHHHc
Confidence 995 4556799999999999999 4455677788888899987 66 789999999999999
Q ss_pred hcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 007873 552 TYGTQALAEMMKNG--MAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 552 ~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~ 582 (586)
+ ++.+++|++.+ +....+|+.+++.+++.
T Consensus 356 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (391)
T 3tsa_A 356 D--TGFAAAAIKLSDEITAMPHPAALVRTLENT 386 (391)
T ss_dssp C--THHHHHHHHHHHHHHTSCCHHHHHHHHHHC
T ss_pred C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8 66677776655 45778999999988764
No 40
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.59 E-value=5.4e-14 Score=148.76 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=112.4
Q ss_pred CcEEEEEecCccc-cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 402 IPVIGFIGRLEEQ-KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 402 ~~~i~~iGrl~~~-KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.+++++.|++... ++.+.+.+++..+.+.+++++++|++.. .+.++ ..+.++......+ ..++++.||++
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~--~~~l~----~~~~~v~~~~~~~---~~~ll~~ad~~ 303 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD--ISPLG----TLPRNVRAVGWTP---LHTLLRTCTAV 303 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSC--CGGGC----SCCTTEEEESSCC---HHHHHTTCSEE
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcC--hhhhc----cCCCcEEEEccCC---HHHHHhhCCEE
Confidence 4677888999655 4655555555555445889999887762 11121 3456787776653 34589999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEE----cCCcCcc--cccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHHHh
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLV--DTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALAT 552 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~----s~~gg~~--e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll~~ 552 (586)
|. .+-+.+++|||++|+|+|+ .+..+.. +.+.+...|+.+ ++. ++++++ +++++
T Consensus 304 v~----~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~----------~~~~~~~~~l~----~ll~~ 365 (398)
T 3oti_A 304 VH----HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVS----------TSDKVDADLLR----RLIGD 365 (398)
T ss_dssp EE----CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEEC----------CGGGCCHHHHH----HHHHC
T ss_pred EE----CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEee----------CCCCCCHHHHH----HHHcC
Confidence 95 4556899999999999999 6678888 999998999986 554 566666 78887
Q ss_pred cCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 553 YGTQALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 553 ~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
+..+++|++.+ +....+|+.+++.+++..
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 366 --ESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp --HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77777777766 467899999999887653
No 41
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.56 E-value=3.5e-13 Score=142.04 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=108.6
Q ss_pred CCcEEEEEecCcccc--CHHHHHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 401 NIPVIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 401 ~~~~i~~iGrl~~~K--G~d~Ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
...++++.|+....+ .+..+++++..+ ++++++ +|.+.. .+.++ ..+.++......+.. ++++.|
T Consensus 231 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~--~~~~~----~~~~~v~~~~~~~~~---~ll~~a 298 (402)
T 3ia7_A 231 APVLLVSLGNQFNEHPEFFRACAQAFADT---PWHVVMAIGGFLD--PAVLG----PLPPNVEAHQWIPFH---SVLAHA 298 (402)
T ss_dssp CCEEEEECCSCSSCCHHHHHHHHHHHTTS---SCEEEEECCTTSC--GGGGC----SCCTTEEEESCCCHH---HHHTTE
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHHhcC---CcEEEEEeCCcCC--hhhhC----CCCCcEEEecCCCHH---HHHhhC
Confidence 345678889987665 355555555543 467665 565531 11121 245567766554443 799999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-----CcCcccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHH
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVAS-----TGGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 550 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~-----~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll 550 (586)
|++|..+- ..+++|||++|+|+|+.. ..+..+.+.+...|..+ .++ |+++|+++|.+++
T Consensus 299 d~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~~~~ll 364 (402)
T 3ia7_A 299 RACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVL----------RPDQLEPASIREAVERLA 364 (402)
T ss_dssp EEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEEC----------CGGGCSHHHHHHHHHHHH
T ss_pred CEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEc----------cCCCCCHHHHHHHHHHHH
Confidence 99997542 378899999999999554 45677788888899886 554 8999999999999
Q ss_pred HhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 551 ATYGTQALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
++ ++.++++.+.+ +....+++.+++.+++..
T Consensus 365 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 397 (402)
T 3ia7_A 365 AD--SAVRERVRRMQRDILSSGGPARAADEVEAYL 397 (402)
T ss_dssp HC--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 98 76666666654 456788999988887643
No 42
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.48 E-value=8.8e-12 Score=130.90 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=107.6
Q ss_pred CcEEEEEecCccc-------cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHH
Q 007873 402 IPVIGFIGRLEEQ-------KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 474 (586)
Q Consensus 402 ~~~i~~iGrl~~~-------KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l 474 (586)
..++++.|++... +.++.+++++..+ ++++++++++. ..+.++. .+.++.. ...+. .++|
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~--~~~~l~~----~~~~v~~-~~~~~---~~~l 277 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---DVELIVAAPDT--VAEALRA----EVPQARV-GWTPL---DVVA 277 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---TCEEEEECCHH--HHHHHHH----HCTTSEE-ECCCH---HHHG
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC---CcEEEEEeCCC--CHHhhCC----CCCceEE-cCCCH---HHHH
Confidence 4578899999875 6788888888765 78888866543 2223332 3456776 55443 4588
Q ss_pred HhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCC--CHHHHHHHHHH
Q 007873 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRR 548 (586)
Q Consensus 475 ~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ 548 (586)
+.||++|..+ -+++++|||++|+|+|+...++ ..+.+.+...|+.+ ++. ++++|+++|.+
T Consensus 278 ~~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ 343 (384)
T 2p6p_A 278 PTCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIAL----------LPGEDSTEAIADSCQE 343 (384)
T ss_dssp GGCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTCCCHHHHHHHHHH
T ss_pred hhCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEec----------CcCCCCHHHHHHHHHH
Confidence 9999999853 3468999999999999998744 67777777789886 544 79999999999
Q ss_pred HHHhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 007873 549 ALATYGTQALAEMMKNG--MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 549 ll~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~ 581 (586)
++++ ++.++++.+.+ +...-.-+.+++.+++
T Consensus 344 ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 376 (384)
T 2p6p_A 344 LQAK--DTYARRAQDLSREISGMPLPATVVTALEQ 376 (384)
T ss_dssp HHHC--HHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHcC--HHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9998 66666666654 2334455666655543
No 43
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.48 E-value=3.2e-12 Score=135.68 Aligned_cols=155 Identities=13% Similarity=0.018 Sum_probs=107.1
Q ss_pred CCcEEEEEecCcccc--CHHHHHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 401 NIPVIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 401 ~~~~i~~iGrl~~~K--G~d~Ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
...++++.|+..... .+..+++++..+ ++++++ +|.+.. .+.++ ..+.++......+.. .+++.|
T Consensus 247 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~a 314 (415)
T 3rsc_A 247 LPVVLVSLGTTFNDRPGFFRDCARAFDGQ---PWHVVMTLGGQVD--PAALG----DLPPNVEAHRWVPHV---KVLEQA 314 (415)
T ss_dssp CCEEEEECTTTSCCCHHHHHHHHHHHTTS---SCEEEEECTTTSC--GGGGC----CCCTTEEEESCCCHH---HHHHHE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHhcC---CcEEEEEeCCCCC--hHHhc----CCCCcEEEEecCCHH---HHHhhC
Confidence 345677888876443 245555555544 488776 665532 11121 245567766544443 699999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEc----CCcCcccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHHH
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVA----STGGLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 551 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s----~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll~ 551 (586)
|++|..+ -..+++|||++|+|+|+. +.....+.+.+...|..+ .++ ++++|+++|.++++
T Consensus 315 d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~ 380 (415)
T 3rsc_A 315 TVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVL----------PGEKADGDTLLAAVGAVAA 380 (415)
T ss_dssp EEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEEC----------CGGGCCHHHHHHHHHHHHT
T ss_pred CEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEc----------ccCCCCHHHHHHHHHHHHc
Confidence 9999753 236889999999999994 445567777777888876 554 89999999999999
Q ss_pred hcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHh
Q 007873 552 TYGTQALAEMMKNG--MAQDLSWKVSIGTVQEED 583 (586)
Q Consensus 552 ~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~~ 583 (586)
+ ++.++++.+.+ +.....++.+++.+++..
T Consensus 381 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 381 D--PALLARVEAMRGHVRRAGGAARAADAVEAYL 412 (415)
T ss_dssp C--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8 66666666654 456788888888877653
No 44
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.47 E-value=1.9e-13 Score=144.21 Aligned_cols=190 Identities=20% Similarity=0.146 Sum_probs=133.6
Q ss_pred hcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCc-ccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 315 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 315 ~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
+.+|.+++.++..++.+.+ .|++.+ ++.++.|.+ |...+.. ....+.+++++
T Consensus 145 ~~a~~~~~~te~~~~~l~~---~G~~~~------~I~vtGnp~~D~~~~~~------------------~~~~~~~~~~~ 197 (385)
T 4hwg_A 145 HISDVNITLTEHARRYLIA---EGLPAE------LTFKSGSHMPEVLDRFM------------------PKILKSDILDK 197 (385)
T ss_dssp HHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCSHHHHHHHHH------------------HHHHHCCHHHH
T ss_pred hhhceeecCCHHHHHHHHH---cCCCcC------cEEEECCchHHHHHHhh------------------hhcchhHHHHH
Confidence 4689999999999999986 687755 788888743 4221110 11234567888
Q ss_pred hCCCCCCCCcEEEEEecCc---cccCHHHHHHHHhhcccC-CeEEEEEeCCChhhHHHHHHH-H-HHCCCceEEEeccCh
Q 007873 394 VGLPVDRNIPVIGFIGRLE---EQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQL-E-ILYPEKARGVAKFNI 467 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~---~~KG~d~Ll~A~~~l~~~-~v~lvIvG~g~~~~~~~l~~l-~-~~~~~~v~~~~~~~~ 467 (586)
+|++. +..++++.||.+ ..|+++.+++|+.++.+. ++++++... + ...+.++++ . .....++.....+..
T Consensus 198 lgl~~--~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~-p-~~~~~l~~~~~~~~~~~~v~l~~~lg~ 273 (385)
T 4hwg_A 198 LSLTP--KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTH-P-RTKKRLEDLEGFKELGDKIRFLPAFSF 273 (385)
T ss_dssp TTCCT--TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEEC-H-HHHHHHHTSGGGGGTGGGEEECCCCCH
T ss_pred cCCCc--CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECC-h-HHHHHHHHHHHHhcCCCCEEEEcCCCH
Confidence 99864 235666677754 347899999999998653 788777543 2 244455544 1 111235766555565
Q ss_pred HHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc-CcccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
.+...+++.||+++.+| |.++.||+++|+|+|+.... +..|.++.| +++++ +.|++++++++
T Consensus 274 ~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv-----------~~d~~~i~~ai 336 (385)
T 4hwg_A 274 TDYVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-TLIMS-----------GFKAERVLQAV 336 (385)
T ss_dssp HHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEEC-----------CSSHHHHHHHH
T ss_pred HHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEc-----------CCCHHHHHHHH
Confidence 66778999999999776 66789999999999998654 367777765 66764 35999999999
Q ss_pred HHHHHh
Q 007873 547 RRALAT 552 (586)
Q Consensus 547 ~~ll~~ 552 (586)
.+++++
T Consensus 337 ~~ll~d 342 (385)
T 4hwg_A 337 KTITEE 342 (385)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 999987
No 45
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.29 E-value=1.2e-10 Score=125.01 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=109.5
Q ss_pred CcEEEEEecCcc-----ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh
Q 007873 402 IPVIGFIGRLEE-----QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 402 ~~~i~~iGrl~~-----~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~ 476 (586)
..++++.|++.. .|.++.+++++..+ ++++++.+.+.. .+.+ . ..+.++......+. ..+|..
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~--~~~l---~-~~~~~v~~~~~~~~---~~ll~~ 335 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFDAQQ--LEGV---A-NIPDNVRTVGFVPM---HALLPT 335 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS---SSEEEECCCTTT--TSSC---S-SCCSSEEECCSCCH---HHHGGG
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEECCcc--hhhh---c-cCCCCEEEecCCCH---HHHHhh
Confidence 357788899875 48899999999876 688888766542 1111 1 24556776655553 357899
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHH
Q 007873 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 550 (586)
Q Consensus 477 aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll 550 (586)
||++|.. +-+++++|||++|+|+|+....+ ..+.+.+...|+.+ ++. ++++|+++|.+++
T Consensus 336 ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 336 CAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIAL----------PVPELTPDQLRESVKRVL 401 (441)
T ss_dssp CSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred CCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEc----------ccccCCHHHHHHHHHHHh
Confidence 9999973 44579999999999999998743 66677777889876 554 8999999999999
Q ss_pred HhcCHHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 007873 551 ATYGTQALAEMMKNG--MAQDLSWKVSIGTVQEE 582 (586)
Q Consensus 551 ~~~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~ 582 (586)
++ ++.++++.+.+ +.....++.+++.+++.
T Consensus 402 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 433 (441)
T 2yjn_A 402 DD--PAHRAGAARMRDDMLAEPSPAEVVGICEEL 433 (441)
T ss_dssp HC--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 98 66666666654 35678888888887764
No 46
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.21 E-value=3e-09 Score=113.19 Aligned_cols=155 Identities=8% Similarity=-0.007 Sum_probs=100.7
Q ss_pred CCcEEEEEecCccccCHHHHHHHHhhcccCCeEEE-EEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lv-IvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
...++++.|+.. .+..+.+.+++..+.+.+++++ ++|.+... +.+ ..++.++......+.. .+|+.||+
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~--~~~----~~~~~~v~~~~~~~~~---~~l~~~d~ 324 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDP--ADL----GEVPPNVEVHQWVPQL---DILTKASA 324 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCTTSCG--GGG----CSCCTTEEEESSCCHH---HHHTTCSE
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECCcCCh--HHh----ccCCCCeEEecCCCHH---HHHhhCCE
Confidence 345677889887 4444444444444444577874 56775421 111 1245567766544433 58999999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHHHhc
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATY 553 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll~~~ 553 (586)
+|.. +-.++++|||++|+|+|+....+ ..+.+.+...|+.+ +.. ++++++++|.+++++
T Consensus 325 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~- 389 (424)
T 2iya_A 325 FITH----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHI----------PRDQVTAEKLREAVLAVASD- 389 (424)
T ss_dssp EEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CGGGCCHHHHHHHHHHHHHC-
T ss_pred EEEC----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEc----------CcCCCCHHHHHHHHHHHHcC-
Confidence 8863 22378999999999999997643 45566667788875 443 899999999999988
Q ss_pred CHHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 007873 554 GTQALAEMMKNG--MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 554 ~~~~~~~~~~~~--~~~~fsw~~~a~~~~~ 581 (586)
++.++++.+.+ +...-..+..++.+++
T Consensus 390 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 418 (424)
T 2iya_A 390 -PGVAERLAAVRQEIREAGGARAAADILEG 418 (424)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 65555555443 2344556666665554
No 47
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.06 E-value=3.9e-09 Score=110.98 Aligned_cols=153 Identities=15% Similarity=0.114 Sum_probs=94.0
Q ss_pred CcEEEEEecCcccc-CHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 402 IPVIGFIGRLEEQK-GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 402 ~~~i~~iGrl~~~K-G~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
..+++..|++...+ +.+.+.+++..+.+.+.++++.+.+... +.....+.++....+.+. ..+|..||++
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~------~~~~~~~~~v~~~~~~p~---~~lL~~~~~~ 308 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL------ALLGELPANVRVVEWIPL---GALLETCDAI 308 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC------CCCCCCCTTEEEECCCCH---HHHHTTCSEE
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc------cccccCCCCEEEEeecCH---HHHhhhhhhe
Confidence 35666778876544 3455566666665667787776654311 011234556765555553 3588999998
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhcCHH
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ 556 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~ 556 (586)
|. .+-.++++|||++|+|+|+....+ ..+.+.+...|+.+ +. .+..+++|+++|+| +.
T Consensus 309 v~----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l----------~~--~~~~~~al~~lL~d--~~ 370 (400)
T 4amg_A 309 IH----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA----------EA--GSLGAEQCRRLLDD--AG 370 (400)
T ss_dssp EE----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEEC----------CT--TTCSHHHHHHHHHC--HH
T ss_pred ec----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEc----------CC--CCchHHHHHHHHcC--HH
Confidence 84 344578999999999999965443 55666666678765 43 34467899999998 54
Q ss_pred HHHHHHHHH--HHhcCCHHHHHHHHHH
Q 007873 557 ALAEMMKNG--MAQDLSWKVSIGTVQE 581 (586)
Q Consensus 557 ~~~~~~~~~--~~~~fsw~~~a~~~~~ 581 (586)
.+++..+-+ ++..=+-...++.+++
T Consensus 371 ~r~~a~~l~~~~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 371 LREAALRVRQEMSEMPPPAETAAXLVA 397 (400)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 433322221 2333367777777665
No 48
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.03 E-value=3.2e-08 Score=104.79 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=100.1
Q ss_pred CcEEEEEecCc-cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 402 IPVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 402 ~~~i~~iGrl~-~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.+++++.|++. ..+.++.+++++..+ ++++++.++... .. . ...+.++......+. ..++..||++
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g~~~-~~----~--~~~~~~v~~~~~~~~---~~ll~~~d~~ 288 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSGWAG-LG----R--IDEGDDCLVVGEVNH---QVLFGRVAAV 288 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECTTTT-CC----C--SSCCTTEEEESSCCH---HHHGGGSSEE
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeCCcc-cc----c--ccCCCCEEEecCCCH---HHHHhhCcEE
Confidence 46778889988 777788888888876 677777654331 10 0 123456776655443 3588999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCC--CCHHHHHHHHHHHHHhcC
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDP--VDVAAVSTTVRRALATYG 554 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~--~d~~~la~~I~~ll~~~~ 554 (586)
|..+ -..++.||+++|+|+|+....+ ..+.+.+...|..+ .+ .++++|+++|.++++
T Consensus 289 v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l----------~~~~~~~~~l~~ai~~ll~--- 351 (404)
T 3h4t_A 289 VHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAH----------DGPTPTVESLSAALATALT--- 351 (404)
T ss_dssp EECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------SSSSCCHHHHHHHHHHHTS---
T ss_pred EECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEecc----------CcCCCCHHHHHHHHHHHhC---
Confidence 9532 2378999999999999986544 33445566678875 43 379999999999986
Q ss_pred HHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 007873 555 TQALAEMMKNGM--AQDLSWKVSIGTVQEE 582 (586)
Q Consensus 555 ~~~~~~~~~~~~--~~~fsw~~~a~~~~~~ 582 (586)
++.++++.+.+. .. -.++.+++.+++.
T Consensus 352 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 380 (404)
T 3h4t_A 352 PGIRARAAAVAGTIRT-DGTTVAAKLLLEA 380 (404)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 344555554432 23 4666666666543
No 49
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=98.95 E-value=2.7e-07 Score=102.92 Aligned_cols=220 Identities=19% Similarity=0.187 Sum_probs=156.1
Q ss_pred chhhhhHHhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcC----CCCc----cccc------
Q 007873 306 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWN----PLTD----KYIG------ 371 (586)
Q Consensus 306 ~~~~~~~~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~----p~~~----~~~~------ 371 (586)
.+++-..++..|..|..||.-..+.+.+..... ...+.+..++.-+.|||.+..|- |.-. +.|.
T Consensus 467 ~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~f~d--f~~l~P~~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~iG~~~~~W 544 (879)
T 1ygp_A 467 QIRMAFLAIVGSHKVNGVVELHSELIKTTIFKD--FIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEY 544 (879)
T ss_dssp EEEHHHHHHHHEEEEEESSHHHHHHHHHTTTHH--HHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHTTCTTCGG
T ss_pred eeehHHHHHHhcCceeEehHHHHHHHHHHHhHH--HHHhCCCCcccCcCCCcCCchhhhhcCHHHHHHHHHhcCCChhhh
Confidence 456666778889999999998877764311100 11222223888999999887774 3210 0111
Q ss_pred ----------ccc-Cccc----cccccHHHHHH----HHHHh-CCCCC-----CCCcEEEEEecCccccCHHH-HHHHHh
Q 007873 372 ----------VKY-DAST----VMDAKPLLKEA----LQAEV-GLPVD-----RNIPVIGFIGRLEEQKGSDI-LAAAIP 425 (586)
Q Consensus 372 ----------~~~-~~~~----~~~~~~~~~~~----l~~~~-gl~~~-----~~~~~i~~iGrl~~~KG~d~-Ll~A~~ 425 (586)
.+| ++.. +.+.+..+|.. ++++. |...+ ++...++++-|+.++|...+ ++..+.
T Consensus 545 ~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ 624 (879)
T 1ygp_A 545 LLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIY 624 (879)
T ss_dssp GTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred hhCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHH
Confidence 001 1111 12233334444 45667 88888 78899999999999999999 666655
Q ss_pred hccc------------------CCeEEEEEeCCC------hhhHHHHHHHHH------HCCC--ceEEEeccChHHHHHH
Q 007873 426 HFIK------------------ENVQIIVLGTGK------KPMEKQLEQLEI------LYPE--KARGVAKFNIPLAHMI 473 (586)
Q Consensus 426 ~l~~------------------~~v~lvIvG~g~------~~~~~~l~~l~~------~~~~--~v~~~~~~~~~~~~~~ 473 (586)
.+.+ .+++++|.|+.. +...+.+.+++. ...+ +|.+...|+...+..+
T Consensus 625 ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~i 704 (879)
T 1ygp_A 625 RYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEII 704 (879)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHH
T ss_pred HHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHHHHh
Confidence 4411 379999999854 334455555654 2344 7999999999999999
Q ss_pred HHhccEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCCcCccccccc--CcceEEEccc
Q 007873 474 IAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMGSF 527 (586)
Q Consensus 474 l~~aDi~l~PS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~--g~~G~~~~~~ 527 (586)
+.+||+....|+ .|.+|..-+-+|..|.+.|+|-.|...|+.++ ..|+|+||..
T Consensus 705 ipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~fiFG~~ 762 (879)
T 1ygp_A 705 IPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNL 762 (879)
T ss_dssp GGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSEEESCC
T ss_pred hhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEEEccCC
Confidence 999999999987 59999999999999999999999999999876 5699999965
No 50
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.92 E-value=6.2e-09 Score=96.24 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=94.5
Q ss_pred CcEEEEEecCc---cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHH--Hh
Q 007873 402 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AG 476 (586)
Q Consensus 402 ~~~i~~iGrl~---~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l--~~ 476 (586)
..++++.|++. +.|.+..+++++..+ +.++++++++... ..++.++......+.. +++ +.
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~---------~~~~~~v~~~~~~~~~---~~l~~~~ 86 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFDGNKP---------DTLGLNTRLYKWIPQN---DLLGHPK 86 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECCSSCC---------TTCCTTEEEESSCCHH---HHHTSTT
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEECCcCc---------ccCCCcEEEecCCCHH---HHhcCCC
Confidence 46888899986 778889999998765 4788877765521 1245568777665653 345 99
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc----CcccccccCcceEEEccccccccCCCCC--CHHHHHHHHHHHH
Q 007873 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRAL 550 (586)
Q Consensus 477 aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g----g~~e~v~~g~~G~~~~~~~~~~~~v~~~--d~~~la~~I~~ll 550 (586)
||++|.. +-+++++|||++|+|+|+.... +..+.+.+...|+.+ ++. ++++|+++|.+++
T Consensus 87 ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll 152 (170)
T 2o6l_A 87 TRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRV----------DFNTMSSTDLLNALKRVI 152 (170)
T ss_dssp EEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred cCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEe----------ccccCCHHHHHHHHHHHH
Confidence 9999974 4469999999999999999864 456677788899986 655 8999999999999
Q ss_pred Hh
Q 007873 551 AT 552 (586)
Q Consensus 551 ~~ 552 (586)
++
T Consensus 153 ~~ 154 (170)
T 2o6l_A 153 ND 154 (170)
T ss_dssp HC
T ss_pred cC
Confidence 87
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.76 E-value=9.5e-07 Score=93.56 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=93.3
Q ss_pred CcEEEEEecCc---cccCHHHHHHHHhhcccCCeEEEEE-eCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc
Q 007873 402 IPVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 477 (586)
Q Consensus 402 ~~~i~~iGrl~---~~KG~d~Ll~A~~~l~~~~v~lvIv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 477 (586)
..++++.|++. ..+.++.+++++..+ +++++++ |.+... . ...+.++......+. .+++..|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~---~~ll~~~ 303 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGWTELV----L----PDDRDDCFAIDEVNF---QALFRRV 303 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTTTTCC----C----SCCCTTEEEESSCCH---HHHGGGS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCCcccc----c----cCCCCCEEEeccCCh---HHHhccC
Confidence 35778889985 577788888888876 5667664 665421 1 234556766555453 3578999
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
|++|. .+-.++++||+++|+|+|+....+ ..+.+.+...|+.+. .+..++++++++|.++ ++
T Consensus 304 d~~v~----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~--------~~~~~~~~l~~~i~~l-~~- 369 (416)
T 1rrv_A 304 AAVIH----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHD--------GPTPTFESLSAALTTV-LA- 369 (416)
T ss_dssp SEEEE----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECS--------SSCCCHHHHHHHHHHH-TS-
T ss_pred CEEEe----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCC--------CCCCCHHHHHHHHHHh-hC-
Confidence 99997 233469999999999999976533 555666677888750 1235899999999999 77
Q ss_pred CHHHHHHHHHH
Q 007873 554 GTQALAEMMKN 564 (586)
Q Consensus 554 ~~~~~~~~~~~ 564 (586)
++.++++.+.
T Consensus 370 -~~~~~~~~~~ 379 (416)
T 1rrv_A 370 -PETRARAEAV 379 (416)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 6655555554
No 52
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.70 E-value=2.3e-07 Score=101.66 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=112.2
Q ss_pred HhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEE--EEeCCCh---hhHHHHHHHHHHCCCceEEEecc
Q 007873 393 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQII--VLGTGKK---PMEKQLEQLEILYPEKARGVAKF 465 (586)
Q Consensus 393 ~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lv--IvG~g~~---~~~~~l~~l~~~~~~~v~~~~~~ 465 (586)
.++++.+.+.++++.+.++ .|..+.+++++.++.+ |+..++ ++|.+.. ...+.+.+... .+.+.+.+..
T Consensus 432 ~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI--~~Rv~F~g~~ 507 (631)
T 3q3e_A 432 DYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYL--GDSATAHPHS 507 (631)
T ss_dssp CCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHH--GGGEEEECCC
T ss_pred cccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCC--CccEEEcCCC
Confidence 3566644345677777764 7999999999998876 665553 3674322 22233333332 2468888777
Q ss_pred ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccc------cCcceE-EEccccccccCCCCCC
Q 007873 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE------EGFTGF-QMGSFSVDCEAVDPVD 538 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~------~g~~G~-~~~~~~~~~~~v~~~d 538 (586)
+.++....++.||++|-|+.+.+ |++.+|||++|+|||+...+++..-+. -|..++ +. .|
T Consensus 508 p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA------------~d 574 (631)
T 3q3e_A 508 PYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA------------NT 574 (631)
T ss_dssp CHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE------------SS
T ss_pred CHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec------------CC
Confidence 87777789999999999997654 999999999999999987666655443 233442 32 57
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007873 539 VAAVSTTVRRALATYGTQALAEMMKNGMA 567 (586)
Q Consensus 539 ~~~la~~I~~ll~~~~~~~~~~~~~~~~~ 567 (586)
.+++++...++.+| ++.+.+++++..+
T Consensus 575 ~eeYv~~Av~La~D--~~~l~~LR~~Lr~ 601 (631)
T 3q3e_A 575 VDEYVERAVRLAEN--HQERLELRRYIIE 601 (631)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 99999999999999 8888888887753
No 53
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.10 E-value=6.1e-06 Score=87.30 Aligned_cols=133 Identities=17% Similarity=0.096 Sum_probs=93.0
Q ss_pred CcEEEEEecC-ccccCHHHHHHHHhhcccCCeEEEEE-eCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccE
Q 007873 402 IPVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 479 (586)
Q Consensus 402 ~~~i~~iGrl-~~~KG~d~Ll~A~~~l~~~~v~lvIv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi 479 (586)
..++++.|++ ...+..+.+++++..+ +.+++++ |.+... . ...+.++......+.. +++..||+
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~----~----~~~~~~v~~~~~~~~~---~~l~~~d~ 304 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGWADLV----L----PDDGADCFAIGEVNHQ---VLFGRVAA 304 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTCTTCC----C----SSCGGGEEECSSCCHH---HHGGGSSE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCCCccc----c----cCCCCCEEEeCcCChH---HHHhhCCE
Confidence 3678888999 5888899999999876 4566554 765421 1 1234467655555543 46899999
Q ss_pred EEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccCcceEEEccccccccCCCC--CCHHHHHHHHHHHHHhc
Q 007873 480 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDP--VDVAAVSTTVRRALATY 553 (586)
Q Consensus 480 ~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~--~d~~~la~~I~~ll~~~ 553 (586)
+|.. +-.++++|||++|+|+|+....+ ..+.+.+...|+.+ +. .++++++++|.++ ++
T Consensus 305 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~l-~~- 368 (415)
T 1iir_A 305 VIHH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAH----------DGPIPTFDSLSAALATA-LT- 368 (415)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------SSSSCCHHHHHHHHHHH-TS-
T ss_pred EEeC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccC----------CcCCCCHHHHHHHHHHH-cC-
Confidence 9973 22369999999999999997654 55667777788875 43 4899999999999 77
Q ss_pred CHHHHHHHHHHH
Q 007873 554 GTQALAEMMKNG 565 (586)
Q Consensus 554 ~~~~~~~~~~~~ 565 (586)
++.++++.+.+
T Consensus 369 -~~~~~~~~~~~ 379 (415)
T 1iir_A 369 -PETHARATAVA 379 (415)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 65555555543
No 54
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.17 E-value=0.036 Score=56.87 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=74.3
Q ss_pred HHHHHhCCCCCCCCcEEEEEecCccccCH--HHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEE-Eecc
Q 007873 389 ALQAEVGLPVDRNIPVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARG-VAKF 465 (586)
Q Consensus 389 ~l~~~~gl~~~~~~~~i~~iGrl~~~KG~--d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~-~~~~ 465 (586)
.+.++.|++.++ ..+++..|.-.+.|.. +.+.+.+..|.+.+.+++++|... ..+..+++....+.++.. .+..
T Consensus 174 ~~l~~~g~~~~~-~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~--e~~~~~~i~~~~~~~~~~l~g~~ 250 (349)
T 3tov_A 174 EFYSSHGLTDTD-ILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPM--DLEMVQPVVEQMETKPIVATGKF 250 (349)
T ss_dssp HHHHHTTCCTTC-CEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTT--THHHHHHHHHTCSSCCEECTTCC
T ss_pred HHHHHcCCCCCC-CEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcc--hHHHHHHHHHhcccccEEeeCCC
Confidence 344566775332 2344556654556654 678888888866678888888654 345566666655543333 3345
Q ss_pred ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc
Q 007873 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (586)
+-.++..+++.||++|.+- .|..-+ |.++|+|+|+--.+
T Consensus 251 sl~e~~ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lfg~ 289 (349)
T 3tov_A 251 QLGPLAAAMNRCNLLITND----SGPMHV-GISQGVPIVALYGP 289 (349)
T ss_dssp CHHHHHHHHHTCSEEEEES----SHHHHH-HHTTTCCEEEECSS
T ss_pred CHHHHHHHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEECC
Confidence 6677888999999999642 455555 89999999986433
No 55
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.13 E-value=0.014 Score=66.05 Aligned_cols=179 Identities=12% Similarity=-0.026 Sum_probs=116.8
Q ss_pred HHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHHCC---CceEEEecc
Q 007873 391 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP---EKARGVAKF 465 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~--~~v~lvIvG~g~~~~~~~l~~l~~~~~---~~v~~~~~~ 465 (586)
|+.+|||.+. |+|..--...|=-+.++++..++.+ |+-+|++...... .++.+++...+.+ +++.+....
T Consensus 514 R~~~gLp~~~----v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~-~~~~l~~~~~~~gi~~~r~~f~~~~ 588 (723)
T 4gyw_A 514 RSQYGLPEDA----IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-GEPNIQQYAQNMGLPQNRIIFSPVA 588 (723)
T ss_dssp GGGGTCCTTS----EEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGG-GHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred hhhcCCCCCC----EEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH-HHHHHHHHHHhcCCCcCeEEECCCC
Confidence 5678888543 4443334457777777777777766 8999998876543 4566666666655 367777777
Q ss_pred ChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHH
Q 007873 466 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTT 545 (586)
Q Consensus 466 ~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~ 545 (586)
+.++-...+..+|++|=|.-+ +-+.+.+||+.+|+|||+-....+..=+.. +++ -++.+...-..|.++..+.
T Consensus 589 ~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~---s~l---~~~gl~e~ia~~~~~Y~~~ 661 (723)
T 4gyw_A 589 PKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAA---SQL---TCLGCLELIAKNRQEYEDI 661 (723)
T ss_dssp CHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHH---HHH---HHHTCGGGBCSSHHHHHHH
T ss_pred CHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHH---HHH---HHcCCcccccCCHHHHHHH
Confidence 777766789999999987665 458999999999999998764332221110 000 0000011123688999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHH-----HhcCCHHHHHHHHHHHh
Q 007873 546 VRRALATYGTQALAEMMKNGM-----AQDLSWKVSIGTVQEED 583 (586)
Q Consensus 546 I~~ll~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~~ 583 (586)
-.++.+| ++.+.++++.-. ..-|+-+..++.+++.+
T Consensus 662 a~~la~d--~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~ 702 (723)
T 4gyw_A 662 AVKLGTD--LEYLKKVRGKVWKQRISSPLFNTKQYTMELERLY 702 (723)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHH
T ss_pred HHHHhcC--HHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHH
Confidence 9999888 666655554432 23577777777776643
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.73 E-value=0.013 Score=59.61 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEec-CccccCHH--HHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCC----Cc
Q 007873 386 LKEALQAEVGLPVDRNIPVIGFIGR-LEEQKGSD--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP----EK 458 (586)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGr-l~~~KG~d--~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~----~~ 458 (586)
..+.+++.+|++.+ ...+++..|. ..+.|... .+.+++..|.+.+++++++|... ..+..+++....+ .+
T Consensus 166 ~~~~~~~~~~~~~~-~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~--e~~~~~~i~~~~~~~~~~~ 242 (348)
T 1psw_A 166 EKSYTCNQFSLSSE-RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAK--DHEAGNEILAALNTEQQAW 242 (348)
T ss_dssp HHHHHHHHTTCCSS-SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGG--GHHHHHHHHTTSCHHHHTT
T ss_pred HHHHHHHHhCCCCC-CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChh--hHHHHHHHHHhhhhccccc
Confidence 34566777887532 2245566676 55667654 88888888866689999988654 3444555554433 13
Q ss_pred eEEE-eccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 459 ARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 459 v~~~-~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
+... +..+-.++..+++.||++|... .|..-+ |.++|+|+|+--
T Consensus 243 ~~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~lf 287 (348)
T 1psw_A 243 CRNLAGETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVALY 287 (348)
T ss_dssp EEECTTTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEEE
T ss_pred eEeccCcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEEE
Confidence 4333 3445677788999999999865 344444 999999999864
No 57
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=96.24 E-value=0.022 Score=56.64 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=62.6
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
.++++.|..+...-.+.+++++... .. -.+|+|.+.+ ..+.+++...+.+ ++... .|. +.+.++|+.||++|.
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~~--~~-i~vv~G~~~~-~~~~l~~~~~~~~-~v~v~-~~~-~~m~~~m~~aDlvI~ 231 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPKT--KI-ISIATSSSNP-NLKKLQKFAKLHN-NIRLF-IDH-ENIAKLMNESNKLII 231 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCTT--SC-EEEEECTTCT-THHHHHHHHHTCS-SEEEE-ESC-SCHHHHHHTEEEEEE
T ss_pred eEEEEECCCchhhHHHHHHHHhhcC--CC-EEEEECCCch-HHHHHHHHHhhCC-CEEEE-eCH-HHHHHHHHHCCEEEE
Confidence 4566788776655455566665543 23 3466788865 3455666555444 45544 333 346679999999997
Q ss_pred cCCCCCCcHHHHHHHHcCCcEEEcC
Q 007873 483 PSRFEPCGLIQLHAMRYGTVPIVAS 507 (586)
Q Consensus 483 PS~~E~~gl~~lEAma~G~PvI~s~ 507 (586)
+ .|.++.|++++|+|.|.-.
T Consensus 232 ~-----gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 232 S-----ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp E-----SSHHHHHHHHTTCCEEEEC
T ss_pred C-----CcHHHHHHHHcCCCEEEEe
Confidence 3 4689999999999998865
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=95.58 E-value=0.1 Score=55.49 Aligned_cols=134 Identities=14% Similarity=0.009 Sum_probs=78.7
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
.+.+..|..... ..+.+.+.+..|.+.+.+|+++-.+.. ....-+...++.++++....+.++ ..+|+.+++-++
T Consensus 275 vVyvsfGS~~~~-~~~~~~el~~~l~~~~~~flw~~~~~~-~~~lp~~~~~~~~~~~~vv~w~Pq---~~vL~h~~v~~f 349 (454)
T 3hbf_A 275 VVYISFGSVVTP-PPHELTALAESLEECGFPFIWSFRGDP-KEKLPKGFLERTKTKGKIVAWAPQ---VEILKHSSVGVF 349 (454)
T ss_dssp EEEEECCSSCCC-CHHHHHHHHHHHHHHCCCEEEECCSCH-HHHSCTTHHHHTTTTEEEESSCCH---HHHHHSTTEEEE
T ss_pred eEEEecCCCCcC-CHHHHHHHHHHHHhCCCeEEEEeCCcc-hhcCCHhHHhhcCCceEEEeeCCH---HHHHhhcCcCeE
Confidence 455666776532 334444444444334666665433321 111001122334455665543343 268999995544
Q ss_pred cCCCCCCc-HHHHHHHHcCCcEEEcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 483 PSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 483 PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-+. || ++++||+++|+|+|+-...+ ....+.+. +.|..+. -..-+.++++++|++++++
T Consensus 350 vtH---~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~--------~~~~~~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 350 LTH---SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD--------NGVLTKESIKKALELTMSS 414 (454)
T ss_dssp EEC---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECG--------GGSCCHHHHHHHHHHHHSS
T ss_pred Eec---CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEec--------CCCCCHHHHHHHHHHHHCC
Confidence 444 55 67999999999999986533 33455553 6787651 0135789999999999976
No 59
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=95.57 E-value=0.04 Score=58.76 Aligned_cols=142 Identities=11% Similarity=-0.029 Sum_probs=80.7
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEE-EeCCCh-hhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hc
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIV-LGTGKK-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GA 477 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvI-vG~g~~-~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~a 477 (586)
..+++..|..... ..+.+.+.+..|.+.++++++ +|.... ...+.+ ..+.+.++....+.+. . .+|+ .+
T Consensus 272 ~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~---~~~~~~~~~v~~w~pq-~--~vL~h~~~ 344 (456)
T 2c1x_A 272 SVVYISFGTVTTP-PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF---LEKTRGYGMVVPWAPQ-A--EVLAHEAV 344 (456)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTH---HHHHTTTEEEESCCCH-H--HHHTSTTE
T ss_pred ceEEEecCccccC-CHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHH---HhhcCCceEEecCCCH-H--HHhcCCcC
Confidence 3556667776643 344444444444333556554 454321 111111 1122345654443343 2 4788 67
Q ss_pred cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 478 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 478 Di~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|++|. -+=.++++||+++|+|+|+-...+ ....+.+. +.|+.+. -..-+.++++++|++++++
T Consensus 345 ~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~--------~~~~~~~~l~~~i~~ll~~ 412 (456)
T 2c1x_A 345 GAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE--------GGVFTKSGLMSCFDQILSQ 412 (456)
T ss_dssp EEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECG--------GGSCCHHHHHHHHHHHHHS
T ss_pred CEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEec--------CCCcCHHHHHHHHHHHHCC
Confidence 78883 233477999999999999987532 33455555 6777651 0124789999999999987
Q ss_pred cCHHHHHHHHHHH
Q 007873 553 YGTQALAEMMKNG 565 (586)
Q Consensus 553 ~~~~~~~~~~~~~ 565 (586)
++ .+++++++
T Consensus 413 --~~-~~~~r~~a 422 (456)
T 2c1x_A 413 --EK-GKKLRENL 422 (456)
T ss_dssp --HH-HHHHHHHH
T ss_pred --Cc-HHHHHHHH
Confidence 43 33444444
No 60
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=95.01 E-value=0.25 Score=55.79 Aligned_cols=188 Identities=11% Similarity=0.078 Sum_probs=106.2
Q ss_pred HhhcCCEEEEeCHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccC--CcCCCCccccccccCccccccccHHHHHHH
Q 007873 313 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQ--EWNPLTDKYIGVKYDASTVMDAKPLLKEAL 390 (586)
Q Consensus 313 ~~~~ad~vitvS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 390 (586)
.....|.+++.|+...+.+.+ .++++.+ .++.-|..-. .+... .....++.+
T Consensus 475 ~~~~~D~~~~~s~~~~~~~~~--~f~~~~~--------~i~~~G~PR~D~l~~~~----------------~~~~~~~~~ 528 (729)
T 3l7i_A 475 ETSRWDYLISPNRYSTEIFRS--AFWMDEE--------RILEIGYPRNDVLVNRA----------------NDQEYLDEI 528 (729)
T ss_dssp HHTTCSEEEESSHHHHHHHHH--HTCCCGG--------GEEESCCGGGHHHHHST----------------TCHHHHHHH
T ss_pred hhccCCEEEeCCHHHHHHHHH--HhCCCcc--------eEEEcCCCchHHHhccc----------------chHHHHHHH
Confidence 345689999999999888875 3555433 2333444111 11111 122346678
Q ss_pred HHHhCCCCCCCCcEEEEEecCcccc----C-----HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEE
Q 007873 391 QAEVGLPVDRNIPVIGFIGRLEEQK----G-----SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 461 (586)
Q Consensus 391 ~~~~gl~~~~~~~~i~~iGrl~~~K----G-----~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~ 461 (586)
+++++++. ++++|+|.-.+.... | ...-++.+.+...++..+++-.- ......+ .+ ..+.+.+..
T Consensus 529 ~~~~~~~~--~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~H--p~~~~~~-~~-~~~~~~~~~ 602 (729)
T 3l7i_A 529 RTHLNLPS--DKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRMH--YLISNAL-DL-SGYENFAID 602 (729)
T ss_dssp HHHTTCCS--SCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECCC--HHHHTTC-CC-TTCTTTEEE
T ss_pred HHHhCCCC--CCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEecC--cchhccc-cc-cccCCcEEe
Confidence 89999874 458999998766531 1 11112333332235666666332 1111110 00 112223333
Q ss_pred EeccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCC----------cCcccccccCcceEEEccccccc
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST----------GGLVDTVEEGFTGFQMGSFSVDC 531 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~----------gg~~e~v~~g~~G~~~~~~~~~~ 531 (586)
...+ +.+.+++..||++| --++-+++|++..++|||.-.- |-..+ +.+..-|-++
T Consensus 603 ~~~~--~di~~ll~~aD~lI-----TDySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d-~~~~~pg~~~------- 667 (729)
T 3l7i_A 603 VSNY--NDVSELFLISDCLI-----TDYSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMN-YMEDLPGPIY------- 667 (729)
T ss_dssp CTTC--SCHHHHHHTCSEEE-----ESSCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSC-TTSSSSSCEE-------
T ss_pred CCCC--cCHHHHHHHhCEEE-----eechHHHHhHHhhCCCEEEecCCHHHHhhccCCcccC-hhHhCCCCeE-------
Confidence 3222 34567999999999 3588899999999999997731 11111 1111223333
Q ss_pred cCCCCCCHHHHHHHHHHHHHh
Q 007873 532 EAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 532 ~~v~~~d~~~la~~I~~ll~~ 552 (586)
.|.++|.++|......
T Consensus 668 -----~~~~eL~~~i~~~~~~ 683 (729)
T 3l7i_A 668 -----TEPYGLAKELKNLDKV 683 (729)
T ss_dssp -----SSHHHHHHHHTTHHHH
T ss_pred -----CCHHHHHHHHhhhhcc
Confidence 6889999999988764
No 61
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=94.99 E-value=0.21 Score=53.38 Aligned_cols=142 Identities=6% Similarity=-0.059 Sum_probs=80.2
Q ss_pred cEEEEEecCccccCHHHHHHHHhhcccCCeEEEEE-eCCC----h-hhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh
Q 007873 403 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL-GTGK----K-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 476 (586)
Q Consensus 403 ~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIv-G~g~----~-~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~ 476 (586)
.+++..|.+.. ...+.+.+.+..|.+.+.+++++ |... . ...+.+ .+..++++.... |-.+. .+|+.
T Consensus 297 vv~vs~GS~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~---~~~~~~~~~v~~-~~pq~--~~L~h 369 (482)
T 2pq6_A 297 VVYVNFGSTTV-MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF---TNEIADRGLIAS-WCPQD--KVLNH 369 (482)
T ss_dssp EEEEECCSSSC-CCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHH---HHHHTTTEEEES-CCCHH--HHHTS
T ss_pred eEEEecCCccc-CCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhH---HHhcCCCEEEEe-ecCHH--HHhcC
Confidence 45666677642 23444444444444446777654 4221 0 011122 222344566554 43332 48877
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccccc-cCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 477 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 477 aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~v~-~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
+++-++=+. +=.++++||+++|+|+|+-...+ ....+. +-+.|+.+. ..-+.++++++|+++++
T Consensus 370 ~~~~~~vth--~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~---------~~~~~~~l~~~i~~ll~ 438 (482)
T 2pq6_A 370 PSIGGFLTH--CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID---------TNVKREELAKLINEVIA 438 (482)
T ss_dssp TTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC---------SSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEec--CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC---------CCCCHHHHHHHHHHHHc
Confidence 665222222 33477999999999999987543 333343 456777650 23579999999999998
Q ss_pred hcCHHHHHHHHHHH
Q 007873 552 TYGTQALAEMMKNG 565 (586)
Q Consensus 552 ~~~~~~~~~~~~~~ 565 (586)
+ ++ .+++++++
T Consensus 439 ~--~~-~~~~r~~a 449 (482)
T 2pq6_A 439 G--DK-GKKMKQKA 449 (482)
T ss_dssp S--HH-HHHHHHHH
T ss_pred C--Cc-HHHHHHHH
Confidence 7 43 24455554
No 62
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=91.86 E-value=1.3 Score=46.98 Aligned_cols=138 Identities=12% Similarity=0.021 Sum_probs=75.3
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hcc
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GAD 478 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvI-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aD 478 (586)
..+++..|.....-+.+.+.+++..|.+.+.++++ +|.+.+.+.+.+.+.... ++++.... |-.+. .+|+ .+|
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~v~~-w~pq~--~vL~h~~~~ 352 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL-EGKGMICG-WAPQV--EVLAHKAIG 352 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH-HCSEEEES-SCCHH--HHHHSTTEE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc-CCCEEEEc-cCCHH--HHhCCCccC
Confidence 35666777776222434444444444334677665 444311111111111100 23454443 43332 4776 677
Q ss_pred EEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcC----cccc-cccCcceEEEccccccccCCC--CCCHHHHHHHHHHHHH
Q 007873 479 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDT-VEEGFTGFQMGSFSVDCEAVD--PVDVAAVSTTVRRALA 551 (586)
Q Consensus 479 i~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~-v~~g~~G~~~~~~~~~~~~v~--~~d~~~la~~I~~ll~ 551 (586)
++|. =+=.++++||+++|+|+|+-...+ .... +.+-+.|+.+. +-..-. .-+.++++++|+++++
T Consensus 353 ~fvt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~----~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 353 GFVS----HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLR----VDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp EEEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESC----SSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred eEEe----cCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEe----cccCCCCccccHHHHHHHHHHHHh
Confidence 8874 233478999999999999987533 3334 45666777630 000001 3478999999999996
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=91.20 E-value=0.81 Score=45.81 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=84.2
Q ss_pred cEEEEEecCccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEE
Q 007873 403 PVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 480 (586)
Q Consensus 403 ~~i~~iGrl~~~KG--~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~ 480 (586)
.+++..|.=.+.|. .+.+.+.+..|.+.++++++.+.++. ..+..+++....+ ++...+..+-.++..+++.||++
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~-e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPH-EEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHH-HHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCSEE
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHH-HHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCCEE
Confidence 45556665555665 44888888888767889888743432 3344556655554 34444555667788899999999
Q ss_pred EEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccccccc-CcceEEE-ccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 481 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQM-GSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 481 l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~v~~-g~~G~~~-~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|..- .|..=+ |.+.|+|+|+--...-+..... +....++ +. .+| +..-+++++.+++.++++.
T Consensus 258 I~~D----SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~--~~c--m~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 258 VSVD----TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAP--GNE--LSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEES----SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECG--GGC--GGGCCHHHHHHHHHHTTTT
T ss_pred EecC----CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCC--ccc--ccCCCHHHHHHHHHHHHHH
Confidence 9642 355555 7779999988642222222111 1111111 11 122 2445788999999888764
No 64
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=91.14 E-value=1.2 Score=47.37 Aligned_cols=134 Identities=10% Similarity=-0.014 Sum_probs=75.5
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEE-eCCC-------------hhhHHHH-HHHHHHCCCceEEEeccC
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL-GTGK-------------KPMEKQL-EQLEILYPEKARGVAKFN 466 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIv-G~g~-------------~~~~~~l-~~l~~~~~~~v~~~~~~~ 466 (586)
..+.+..|.+.. ...+.+.+.+..|.+.+.+++++ |.+. ......+ +...++..++-.....|-
T Consensus 269 ~vvyvs~GS~~~-~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~ 347 (480)
T 2vch_A 269 SVLYVSFGSGGT-LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWA 347 (480)
T ss_dssp CEEEEECTTTCC-CCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCC
T ss_pred ceEEEecccccC-CCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeCcc
Confidence 356667777753 34455555555554456777654 4321 0000000 001111111112232243
Q ss_pred hHHHHHHHHhccEEEEcCCCCCCc-HHHHHHHHcCCcEEEcCCcC----ccccc-ccCcceEEEccccccccCCC-----
Q 007873 467 IPLAHMIIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEAVD----- 535 (586)
Q Consensus 467 ~~~~~~~l~~aDi~l~PS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~v-~~g~~G~~~~~~~~~~~~v~----- 535 (586)
.+. .+|+.+++-++=+. || ++++||+++|+|+|+-...+ ....+ .+-+.|+.+ +
T Consensus 348 Pq~--~vL~h~~v~~fvtH---gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l----------~~~~~~ 412 (480)
T 2vch_A 348 PQA--QVLAHPSTGGFLTH---CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRP----------RAGDDG 412 (480)
T ss_dssp CHH--HHHHSTTEEEEEEC---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECC----------CCCTTS
T ss_pred CHH--HHhCCCCcCeEEec---ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEe----------ecccCC
Confidence 332 69999996433333 44 67999999999999987543 33343 455677754 3
Q ss_pred CCCHHHHHHHHHHHHH
Q 007873 536 PVDVAAVSTTVRRALA 551 (586)
Q Consensus 536 ~~d~~~la~~I~~ll~ 551 (586)
.-+.++++++|+++++
T Consensus 413 ~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 413 LVRREEVARVVKGLME 428 (480)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 2478999999999997
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=90.57 E-value=0.14 Score=48.92 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=44.1
Q ss_pred HHHHHHHH-hccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCc--------ccccccCcceEEEccccccccCCCCCC
Q 007873 468 PLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL--------VDTVEEGFTGFQMGSFSVDCEAVDPVD 538 (586)
Q Consensus 468 ~~~~~~l~-~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~--------~e~v~~g~~G~~~~~~~~~~~~v~~~d 538 (586)
+.+..+|+ .||++|. =+=..+++|++++|+|.|.-..... .+.+.+...++++ +
T Consensus 123 ~~m~~~l~~~AdlvIs----haGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~-------------~ 185 (224)
T 2jzc_A 123 TKMQSIIRDYSDLVIS----HAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC-------------A 185 (224)
T ss_dssp SSHHHHHHHHCSCEEE----SSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE-------------C
T ss_pred chHHHHHHhcCCEEEE----CCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc-------------C
Confidence 34567999 9999994 2345789999999999988765431 2233333334432 4
Q ss_pred HHHHHHHHHHHH
Q 007873 539 VAAVSTTVRRAL 550 (586)
Q Consensus 539 ~~~la~~I~~ll 550 (586)
++.|+++|.++.
T Consensus 186 ~~~L~~~i~~l~ 197 (224)
T 2jzc_A 186 PTETGLIAGLRA 197 (224)
T ss_dssp SCTTTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566777777763
No 66
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=83.78 E-value=17 Score=30.38 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=70.9
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH----hccEEEEcCCC-CCCcHHHHHHHHc---CCcE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~----~aDi~l~PS~~-E~~gl~~lEAma~---G~Pv 503 (586)
.+++|+.+.+ .....++.+....+..+. ..-+.+++...+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 4 AKILVIDDES-TILQNIKFLLEIDGNEVL--TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred CEEEEEcCCH-HHHHHHHHHHHhCCceEE--EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 4677777654 345566666666553332 3335555555555 56888876553 4567777766643 6777
Q ss_pred EEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.... ..+.+..|..+++. .|.++++|.++|.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLR----------KPVTAQDLSIAINNAINR 123 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEe----------CCCCHHHHHHHHHHHHHH
Confidence 6543222 34456678899998 999999999999999875
No 67
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=82.50 E-value=21 Score=29.94 Aligned_cols=111 Identities=10% Similarity=0.024 Sum_probs=73.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~P 502 (586)
..+++|+.+.. .....++++....+........-+..++...+.. .|++++-... +.-|+.+++.+.. .+|
T Consensus 5 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 5 SKRVLVVEDNP-DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 46777887654 3455666666665543323333356666555544 5788775543 4467888888765 577
Q ss_pred EEEcCCcC----cccccccCcceEEEccccccccCCCCC-CHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~-d~~~la~~I~~ll~~ 552 (586)
+|+-.... ..+.+..|..+++. .|. ++++|.++|.++++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVVD----------KSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEEE----------CCTTSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCcHHHHHHHHHHHHHH
Confidence 76654322 33455678899998 999 999999999999875
No 68
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=82.32 E-value=18 Score=30.09 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=71.6
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~P 502 (586)
..+++|+.+... ....++++..+.+..+ ...-+.+++...+.. .|++++-... +.-|+.+++.+.. .+|
T Consensus 6 ~~~iLivdd~~~-~~~~l~~~l~~~g~~v--~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 6 RPRILICEDDPD-IARLLNLMLEKGGFDS--DMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CSEEEEECSCHH-HHHHHHHHHHHTTCEE--EEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCEEEEcCCHH-HHHHHHHHHHHCCCeE--EEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 457777776543 4555556555555333 223355555555543 4888876553 4567888888765 678
Q ss_pred EEEcCCcC----cc-cccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG----LV-DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg----~~-e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|.-.... .. +....|..+++. .|.++++|.++|.++++.
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLE----------KPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 86654332 22 556678889987 999999999999999986
No 69
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=81.89 E-value=20 Score=30.16 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=68.9
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc-----CC
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~-----G~ 501 (586)
...+++|+.+... ....+.+.....+ ......-+..++...+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 7 ~~~~iLivd~~~~-~~~~l~~~L~~~g--~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 7 KWWRIMLVDTQLP-ALAASISALSQEG--FDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp -CEEEEEECTTGG-GGHHHHHHHHHHT--EEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCceEEEEeCCHH-HHHHHHHHHHHcC--CeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 3567888887653 3334444433333 22223334555544443 36888876544 4567888888764 57
Q ss_pred cEEEcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+|+-. ... ..+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIA----------KPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 776543 222 23345678889998 999999999999999876
No 70
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=79.31 E-value=25 Score=28.87 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=70.3
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh---------ccEEEEcCCC-CCCcHHHHHHHH---
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---------ADFILIPSRF-EPCGLIQLHAMR--- 498 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~---------aDi~l~PS~~-E~~gl~~lEAma--- 498 (586)
.+++|+.+.. .....+.+.....+........-+..++...+.. .|++++-... +.-|+-+++.+.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 3 KKIFLVEDNK-ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CEEEEECCCH-HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CeEEEEeCCH-HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 4667777654 3455566665555532122333355666566653 6888876554 446777777775
Q ss_pred --cCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 499 --YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 499 --~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
..+|+|.-.... ..+....|..+++. .|-++++|.+.|.+++..
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT----------KSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheec----------CCCCHHHHHHHHHHHHHH
Confidence 357776543222 33445568889998 999999999999999865
No 71
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=79.30 E-value=1.6 Score=45.23 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=31.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+|++. | ++|--.-+..|+++|+++||+|+++++.
T Consensus 1 M~Il~~~~---~---~~GHv~P~l~la~~L~~~Gh~V~~~~~~ 37 (415)
T 1iir_A 1 MRVLLATC---G---SRGDTEPLVALAVRVRDLGADVRMCAPP 37 (415)
T ss_dssp CEEEEECC---S---CHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CeEEEEcC---C---CchhHHHHHHHHHHHHHCCCeEEEEcCH
Confidence 89999852 4 4677778888999999999999999976
No 72
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=77.77 E-value=21 Score=30.26 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=71.0
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH-----------hccEEEEcCCC-CCCcHHHHHHHH
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA-----------GADFILIPSRF-EPCGLIQLHAMR 498 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~-----------~aDi~l~PS~~-E~~gl~~lEAma 498 (586)
..+++|+.+.+ .....++++..+.+........-+..++...+. ..|++++=... +.-|+-+++.+.
T Consensus 4 ~~~ILivddd~-~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 4 SVTIVMIEDDL-GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp -CEEEEECCCH-HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CceEEEEeCCH-HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 45777777654 355566666666554212223335666666653 36888775543 456788888876
Q ss_pred c-----CCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 499 Y-----GTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 499 ~-----G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
. .+|+|+-.... ..+.+..|..+++. .|.++++|.+.|.++...
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYIT----------KPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 5 56776544322 23455678899998 999999999999998654
No 73
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=77.58 E-value=30 Score=28.82 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=71.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh---ccEEEEcCCC-C-CCcHHHHHHHH--cCCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-E-PCGLIQLHAMR--YGTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~---aDi~l~PS~~-E-~~gl~~lEAma--~G~Pv 503 (586)
+.+++|+.+.+. ....+.++..+.+..+ ....+..++...+.. .|++++-... + .-|+.+++.+. ..+|+
T Consensus 5 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 5 DKKILIVEDSKF-QAKTIANILNKYGYTV--EIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp -CEEEEECSCHH-HHHHHHHHHHHTTCEE--EEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred CcEEEEEeCCHH-HHHHHHHHHHHcCCEE--EEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCE
Confidence 456777776543 4555666655555333 233456666566643 5888886654 4 56777777665 47777
Q ss_pred EEcCCc----CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~g----g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+-... ...+....|..+++. .|.++++|.+.|.+++..
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYVM----------KSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEESSSSCCCCGGGGGSCEEEEEE----------TTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 654322 233455668889998 999999999999999875
No 74
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=77.52 E-value=3.1 Score=35.69 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=31.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeE-EEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V-~vvt~~ 127 (586)
||++|+-.. +|+ ..-.......++.++.+.||+| .|+--.
T Consensus 1 mk~~iiv~~-~p~--~~~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 1 MKFALQINE-GPY--QHQASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp CEEEEEECS-CTT--TSTHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 789999876 675 3455667889999999999999 777644
No 75
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=77.34 E-value=2.7 Score=41.38 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=28.7
Q ss_pred ecCCCceEEEEeccccCccccch-HHHHhhhhHHHHHhCCCeEEEEE
Q 007873 80 VCGVGLNILFVGTEVAPWSKTGG-LGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 80 ~~~~~MkIl~v~~~~~P~~~~GG-~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
..|+.||||+|... |. ..+ .........+.|.+.||+|+++-
T Consensus 18 ~~m~~MKiLII~aH--P~--~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 18 LYFQSMKVLLIYAH--PE--PRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp ----CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred chhhCCeEEEEEeC--CC--CccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34778999999874 64 333 33455667888999999999984
No 76
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=77.21 E-value=3.1 Score=36.37 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.9
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeE-EEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V-~vvt~~ 127 (586)
.||++|+-.. +|+ ..-.+.....++.++.+.||+| .|+--.
T Consensus 12 ~~~~~ivv~~-~Py--g~~~a~~Al~~A~aala~g~eV~~VFf~~ 53 (140)
T 2d1p_A 12 SMRFAIVVTG-PAY--GTQQASSAFQFAQALIADGHELSSVFFYR 53 (140)
T ss_dssp CCEEEEEECS-CSS--SSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ceEEEEEEcC-CCC--CcHHHHHHHHHHHHHHHCCCccCEEEEec
Confidence 5999999886 676 4456667889999999999999 777543
No 77
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=76.43 E-value=33 Score=28.88 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=70.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc---CCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~---G~PvI 504 (586)
..+++|+.+... ..+.+.++....+........-+.+++...+.. .|++++-... +.-|+.+++.+.. .+|+|
T Consensus 20 m~~iLivdd~~~-~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 20 HMKVLVAEDQSM-LRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp CEEEEEECSCHH-HHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ccEEEEEcCCHH-HHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 467778876542 445555555544421222222355555555543 5788776543 4567777777654 56776
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-.... ..+.+..|..+++. .|.++++|.++|.+++..
T Consensus 99 ~ls~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKAGVDAYVL----------KERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE----------TTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 544322 34456678899998 999999999999999875
No 78
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=74.09 E-value=36 Score=28.11 Aligned_cols=110 Identities=6% Similarity=0.044 Sum_probs=70.2
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CC
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~ 501 (586)
...+++|+.+... ..+.+.++....+..+ ...-+.+++...+.. .|++++-... +.-|+.+++.+.. .+
T Consensus 6 ~~~~iLivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 6 HKGDVMIVDDDAH-VRIAVKTILSDAGFHI--ISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCCEEEEECSCHH-HHHHHHHHHHHTTCEE--EEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCeEEEEcCCHH-HHHHHHHHHHHCCeEE--EEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 4567888876543 4455555555554323 223355555555554 5787775543 4467778887764 46
Q ss_pred cEEEcC-C---cCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVAS-T---GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~-~---gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+|.-. . ....+.+..|..+++. .|.+.++|.+.|.+++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYIT----------KPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 665543 2 2244455667889987 999999999999999865
No 79
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=73.85 E-value=41 Score=28.57 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH-----cCC
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-----YGT 501 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma-----~G~ 501 (586)
...+++|+.+... ....+.++....+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+. ..+
T Consensus 6 ~~~~ILivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 6 RAGEILIVEDSPT-QAEHLKHILEETGYQT--EHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp -CCEEEEECSCHH-HHHHHHHHHHTTTCEE--EEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred CCCcEEEEeCCHH-HHHHHHHHHHHCCCEE--EEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 3567778876543 4555556555555333 223355555555543 5888876554 456788888775 357
Q ss_pred cEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+|+..... ..+.+..|..+++. .|-++++|.+.|.+++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 83 PVILLTILSDPRDVVRSLECGADDFIT----------KPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp CEEEEECCCSHHHHHHHHHHCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 776543222 33445668899998 999999999999999976
No 80
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=73.59 E-value=26 Score=29.95 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=67.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH----hccEEEEcCCC-CCCcHHHHHHHH---cCCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA----GADFILIPSRF-EPCGLIQLHAMR---YGTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~----~aDi~l~PS~~-E~~gl~~lEAma---~G~P 502 (586)
..+++|+.+... ..+.++++..+.+..+.. ..-+..++...+. ..|++++-... +.-|+.+++.+. ..+|
T Consensus 36 ~~~Ilivdd~~~-~~~~l~~~L~~~g~~v~~-~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 36 PFNVLIVDDSVF-TVKQLTQIFTSEGFNIID-TAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp ECEEEEECSCHH-HHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred ceEEEEEeCCHH-HHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 457777776542 455555555555533321 2335555555554 34888876554 446777776664 3677
Q ss_pred EEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
+|+-.... ..+.+..|..+++. .|.++++|.+.|.+++.
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIV----------KPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHTTC
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHhc
Confidence 76554322 33455678899998 99999999999988763
No 81
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=73.51 E-value=36 Score=28.06 Aligned_cols=107 Identities=12% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCCCCCcHHHHHHHHc---CCcEE
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRFEPCGLIQLHAMRY---GTVPI 504 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~E~~gl~~lEAma~---G~PvI 504 (586)
...+++|+.+... ....+.++....+..+. ..-+.+++...+.. .|++++| +.-|+-+++.+.. .+|+|
T Consensus 17 ~~~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii 90 (137)
T 2pln_A 17 GSMRVLLIEKNSV-LGGEIEKGLNVKGFMAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVL 90 (137)
T ss_dssp TCSEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEE
T ss_pred CCCeEEEEeCCHH-HHHHHHHHHHHcCcEEE--EeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEE
Confidence 3567777776542 44455555544443332 23344554444443 5787732 3456666666653 67776
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCC-CHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~-d~~~la~~I~~ll~~ 552 (586)
.-.... ..+.+..|..+++. .|. +.++|.+.|.+++..
T Consensus 91 ~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 91 VSSDNPTSEEEVHAFEQGADDYIA----------KPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEE----------SSCSCHHHHHHHHHHHTC-
T ss_pred EEeCCCCHHHHHHHHHcCCceeee----------CCCCCHHHHHHHHHHHHhh
Confidence 543222 33455678889998 999 999999999988764
No 82
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=73.43 E-value=2.3 Score=41.71 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=25.2
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++. ||.|-.=..|++.|.++||+|++++.+
T Consensus 1 MkILVT----------GatGfIG~~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 1 MRVLVG----------GGTGFIGTALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 787654 455545556999999999999999754
No 83
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=71.51 E-value=30 Score=29.54 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=73.7
Q ss_pred cCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH-----cC
Q 007873 429 KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-----YG 500 (586)
Q Consensus 429 ~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma-----~G 500 (586)
+.+.+++|+-+.+ .....++++-.+.+.... ...-++.++.+.+.. -|++++=-.. +.-|+-+++.+. ..
T Consensus 10 ~k~~rILiVDD~~-~~r~~l~~~L~~~G~~~v-~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFS-TMRRIVKNLLRDLGFNNT-QEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCH-HHHHHHHHHHHHTTCCCE-EEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCH-HHHHHHHHHHHHcCCcEE-EEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3567888887654 356666666666663222 123466666666654 4777765443 457888888885 46
Q ss_pred CcEEEcCCcCcc----cccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 501 TVPIVASTGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 501 ~PvI~s~~gg~~----e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
+|||.-..-+-. +..+.|.++|+. .|-++++|.++|.++++
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~----------KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIV----------KPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEE----------CCCCHHHHHHHHHHHHh
Confidence 788655433322 334568999998 99999999999998864
No 84
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=71.48 E-value=34 Score=28.14 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=69.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc---CCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~---G~PvI 504 (586)
..+++|+.+... ....++++..+.+..+. ..-+..++...+. ..|++++-... +.-|+.+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~~-~~~~l~~~L~~~~~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 7 ALKILIVEDDTD-AREWLSTIISNHFPEVW--SAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CCCEEEECSCHH-HHHHHHHHHHTTCSCEE--EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccEEEEEeCCHH-HHHHHHHHHHhcCcEEE--EECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 467788887553 44455555544332332 2224444444443 45888876553 4567777776653 67777
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+..... ..+.+..|..+++. .|-++++|.+.|.++++.
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLP----------KPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEc----------CCCCHHHHHHHHHHHHHH
Confidence 654333 23445668889986 999999999999999875
No 85
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=71.34 E-value=45 Score=28.02 Aligned_cols=111 Identities=9% Similarity=0.065 Sum_probs=69.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH---------hccEEEEcCCC-CCCcHHHHHHHHc-
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------GADFILIPSRF-EPCGLIQLHAMRY- 499 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~---------~aDi~l~PS~~-E~~gl~~lEAma~- 499 (586)
..+++|+.+.+ .....++.+....+........-+..++...+. ..|++++=... +.-|+-+++.+..
T Consensus 8 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSK-ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCeEEEEECCH-HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 46777777654 345555555554442222222335555555665 36888875544 3457777777753
Q ss_pred ----CCcEEEcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 ----GTVPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 ----G~PvI~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+|+|.-. ... ..+.+..|..|++. .|.+.++|.+.|.+++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT----------KSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHHH
Confidence 46775543 222 33445678899998 999999999999988754
No 86
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=69.40 E-value=45 Score=27.27 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=69.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh---ccEEEEcCCC-CCCcHHHHHHHHc----CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY----GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~---aDi~l~PS~~-E~~gl~~lEAma~----G~P 502 (586)
..+++|+.+... ....++++..+.+..+.. .-+...+...+.. .|++++-... +.-|+.+++.+.. .+|
T Consensus 7 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v~~--~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 7 RPLVLVVDDNAV-NREALILYLKSRGIDAVG--ADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHHHTTCCEEE--ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCeEEEECCCHH-HHHHHHHHHHHcCceEEE--eCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 467788877553 455555655555544432 2344444444432 5777775543 4567888887764 367
Q ss_pred EEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|...... ..+.+..|..+++. .|-++++|.+.|.+++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLL----------KPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEe----------CCCCHHHHHHHHHHHhcC
Confidence 76544322 33455668899998 999999999999999875
No 87
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=69.30 E-value=47 Score=27.42 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=67.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc--CCcEEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY--GTVPIV 505 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~--G~PvI~ 505 (586)
..+++|+.+.+. ....+..+....+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+.. .+|+|.
T Consensus 4 ~~~Ilivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ 80 (136)
T 2qzj_A 4 QTKILIIDGDKD-NCQKLKGFLEEKGISI--DLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVY 80 (136)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHHTTTCEE--EEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEcCCHH-HHHHHHHHHHHCCCEE--EEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEE
Confidence 456777776542 4455555554444323 223355555555543 5888765443 3356777777653 567765
Q ss_pred cC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 506 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 506 s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-. ... ..+.+..|..+++. .|-++++|.+.|.+++..
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLI----------KPLNLEILYAKVKAILRR 121 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHHH
Confidence 43 222 33455678899998 999999999999998865
No 88
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=68.97 E-value=39 Score=28.46 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=65.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh---ccEEEEcCCC-CCCcHHHHHHHH---cCCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMR---YGTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~---aDi~l~PS~~-E~~gl~~lEAma---~G~Pv 503 (586)
..+++|+.+.+. ....++.+.....+.......-+..++...+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 3 ~~~iLivdd~~~-~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHL-IRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHH-HHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHH-HHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 456777776543 445555555444221122223355666666655 6888876543 335677776665 36788
Q ss_pred EEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.... ..+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIP----------KSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCC----------TTSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEe----------CCCCHHHHHHHHHHHHcC
Confidence 7654322 23345567888886 899999999999999875
No 89
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=67.90 E-value=54 Score=27.53 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEE-eccChHHHHHHH--HhccEEEEcCCC-CCCcHHHHHHHHc---CCc
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTV 502 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~~l--~~aDi~l~PS~~-E~~gl~~lEAma~---G~P 502 (586)
...+++|+.+... ..+.+.++..+.+. .... ..-+..++...+ ...|++++-... +.-|+.+++.+.. .+|
T Consensus 14 ~~~~iLivdd~~~-~~~~l~~~L~~~~~-~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 91 (152)
T 3eul_A 14 EKVRVVVGDDHPL-FREGVVRALSLSGS-VNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTR 91 (152)
T ss_dssp CCEEEEEECSSHH-HHHHHHHHHHHHSS-EEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCE
T ss_pred ceEEEEEEcCCHH-HHHHHHHHHhhCCC-eEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 4567777776542 44445555444442 2112 222444544444 346888775543 4567777776653 566
Q ss_pred EEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|.-.... ..+.+..|..|++. .|.++++|.++|.+++..
T Consensus 92 ii~~s~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 92 VLLISAHDEPAIVYQALQQGAAGFLL----------KDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHHcCCCEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 76543222 23455678899998 999999999999999976
No 90
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=67.80 E-value=50 Score=27.13 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=69.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHH-CCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~-~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~ 501 (586)
..+++|+.+.+. ....+.++... .+..+. ...-+.+++...+.. .|++++-... +.-|+.+++.+.. .+
T Consensus 8 ~~~iLivdd~~~-~~~~l~~~L~~~~~~~~v-~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 8 DFSILIIEDDKE-FADMLTQFLENLFPYAKI-KIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp -CEEEEECSCHH-HHHHHHHHHHHHCTTCEE-EEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred CceEEEEECCHH-HHHHHHHHHHhccCccEE-EEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 567778776553 44555555555 453312 222244555455443 5888876554 4467778887764 56
Q ss_pred cEEEcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 502 VPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 502 PvI~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
|+|.-. ... ..+.+..|..+++. .|.++++|.+.|.+++...
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFG----------KPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEe----------CCCCHHHHHHHHHHHHHhh
Confidence 776543 222 23455678889998 9999999999999999763
No 91
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=67.29 E-value=5.2 Score=42.42 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=31.9
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+++++|+++.. | ..|--.-+..|++.|+++||+|+++++.
T Consensus 6 ~~~~~vl~~p~---p---~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 6 NRKPHVVMIPY---P---VQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp --CCEEEEECC---S---SHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCCCEEEEecC---c---cchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34579999872 4 3666778999999999999999999876
No 92
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=66.09 E-value=51 Score=26.64 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=65.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH---hccEEEEcCCC-C-CCcHHHHHHHH---cCCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-E-PCGLIQLHAMR---YGTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~---~aDi~l~PS~~-E-~~gl~~lEAma---~G~P 502 (586)
..+++|+.+.+. ....+.......+..+. ..-+.+++...+. ..|++++-... + .-|+.+++.+. ..+|
T Consensus 5 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 5 AVTILLADDEAI-LLLDFESTLTDAGFLVT--AVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp SCEEEEECSSHH-HHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEcCcHH-HHHHHHHHHHHcCCEEE--EECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 467778876543 44455555555553333 3335555555554 35888875544 3 46777777664 3677
Q ss_pred EEEcCCcCcccccccC--cceEEEccccccccCCCCCCHHHHHHHHHHHHHhc
Q 007873 503 PIVASTGGLVDTVEEG--FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 553 (586)
Q Consensus 503 vI~s~~gg~~e~v~~g--~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 553 (586)
+|......-.+....+ ..+++. .|-++++|.+.|.+++...
T Consensus 82 ii~~s~~~~~~~~~~~~~~~~~l~----------kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDSIILE----------KPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTCEEEE----------SSCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCccHHHHHhhcCCcceEe----------CCCCHHHHHHHHHHHHhcC
Confidence 7654332222222211 126877 9999999999999998763
No 93
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=65.98 E-value=55 Score=26.96 Aligned_cols=111 Identities=7% Similarity=0.011 Sum_probs=71.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh-------ccEEEEcCCC-CCCcHHHHHHHHc---
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG-------ADFILIPSRF-EPCGLIQLHAMRY--- 499 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~-------aDi~l~PS~~-E~~gl~~lEAma~--- 499 (586)
..+++|+.+.. .....+..+....+........-+..++...+.. .|++++-... +.-|+.+++.+..
T Consensus 9 ~~~iLivdd~~-~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 9 IDSVLLIDDDD-IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp EEEEEEECSCH-HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred cceEEEEeCCH-HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 45677777654 3455666666555531122223356666666655 6888876554 4567777777654
Q ss_pred ----CCcEEEcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 ----GTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 ----G~PvI~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+|+|...... ..+....| ..+++. .|-++++|.+.|.+....
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVS----------KPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEEC----------SSCCHHHHHHHHHHHHCC
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeee----------CCCCHHHHHHHHHHHHHh
Confidence 66776554332 23344556 788987 999999999999998875
No 94
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=65.36 E-value=54 Score=26.64 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=67.0
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHH--HhccEEEEcCCC-CCCcHHHHHHHHc---CCcEEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRY---GTVPIV 505 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l--~~aDi~l~PS~~-E~~gl~~lEAma~---G~PvI~ 505 (586)
++++|+.+.+. ....++++..+.+..+.. ..-+.+++...+ ...|++++-... +.-|+.+++.+.. .+|+|.
T Consensus 2 ~~ilivdd~~~-~~~~l~~~L~~~g~~v~~-~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPL-AIAAIRNLLIKNDIEILA-ELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHH-HHHHHHHHHHHTTEEEEE-EESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHH-HHHHHHHHHhhCCcEEEE-EcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 46777776543 455566665555522321 122333333333 346888876554 4567777777653 566655
Q ss_pred cCCc----CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 506 ASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 506 s~~g----g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-... ...+.+..|..+++. .|-++++|.++|.+++..
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVS----------KKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEE----------GGGCTHHHHHHHHHHHTT
T ss_pred EeCCCChHHHHHHHHhCCCEEEe----------CCCCHHHHHHHHHHHHCC
Confidence 4322 234455678899998 999999999999999875
No 95
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=65.19 E-value=5 Score=38.89 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCC
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~ 130 (586)
++||||+.+..- =.+.-+..|.++|.+ +|+|.|++|..++
T Consensus 10 ~~m~ILlTNDDG-------i~apGi~aL~~~l~~-~~~V~VVAP~~~~ 49 (261)
T 3ty2_A 10 PKLRLLLSNDDG-------VYAKGLAILAKTLAD-LGEVDVVAPDRNR 49 (261)
T ss_dssp -CCEEEEECSSC-------TTCHHHHHHHHHHTT-TSEEEEEEESSCC
T ss_pred CCCeEEEEcCCC-------CCCHHHHHHHHHHHh-cCCEEEEecCCCC
Confidence 469999988762 123347778999977 7999999997543
No 96
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=64.65 E-value=57 Score=26.69 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=67.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC------CCCcHHHHHHHH---c
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF------EPCGLIQLHAMR---Y 499 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~------E~~gl~~lEAma---~ 499 (586)
..+++|+.+... ....+.+.....+..+. ..-+..++...+.. .|++++-... +.-|+.+++.+. .
T Consensus 3 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 3 LGTIIIVDDNKG-VLTAVQLLLKNHFSKVI--TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYR 79 (140)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHTTTSSEEE--EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHH-HHHHHHHHHHhCCcEEE--EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCc
Confidence 346777776542 44555555544443332 23355555555554 4777775443 345666666664 3
Q ss_pred CCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 GTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+|+|.-.... ..+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 80 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 80 DLPVVLFTAYADIDLAVRGIKEGASDFVV----------KPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHcCchheee----------CCCCHHHHHHHHHHHHHh
Confidence 67776543222 33445668889998 999999999999999875
No 97
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=64.33 E-value=63 Score=27.07 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=66.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh---ccEEEEcCCC-CCCcHHHHHHHH---cCCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMR---YGTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~---aDi~l~PS~~-E~~gl~~lEAma---~G~Pv 503 (586)
..+++|+.+... ....+.++... +..+ ...-+..++...+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 4 ~~~ILivdd~~~-~~~~l~~~L~~-~~~v--~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 4 NERILLVDDDYS-LLNTLKRNLSF-DFEV--TTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHTT-TSEE--EEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCeEEEEeCCHH-HHHHHHHHhcc-CceE--EEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEE
Confidence 356777777543 33444444332 3223 233355555555543 3888875543 456777776654 36777
Q ss_pred EEcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+-.... ..+.+..| ..+++. .|-++++|.++|..++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 80 LMLTGNQDLTTAMEAVNEGQVFRFLN----------KPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp EEEECGGGHHHHHHHHHHTCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCeeEEEc----------CCCCHHHHHHHHHHHHHH
Confidence 6543222 33445567 789998 999999999999999986
No 98
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=63.98 E-value=6 Score=37.08 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=26.9
Q ss_pred ecCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 80 VCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 80 ~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
..+++|+|++++. +||+|. .+++.|.++||+|.+++.+
T Consensus 17 ~~l~~~~ilVtGa-------tG~iG~---~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 17 LYFQGMRVLVVGA-------NGKVAR---YLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp ----CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred cCcCCCeEEEECC-------CChHHH---HHHHHHHhCCCeEEEEECC
Confidence 3456789887764 467664 5788899999999999865
No 99
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=63.64 E-value=66 Score=27.05 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
..+++|+.+.+. ....+..+....+..+. ..-+..++...+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 3 ~~~ILivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 3 APSVFLIDDDRD-LRKAMQQTLELAGFTVS--SFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp -CEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCEEEEEeCCHH-HHHHHHHHHHHcCcEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 346677776542 44555555555553332 2334555444443 35888776543 345666666664 367876
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+..... ..+.+..|..+++. .|.++++|...|.+++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIA----------KPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEe----------CCCCHHHHHHHHHHHHHH
Confidence 543222 33455678889998 999999999999999876
No 100
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=63.52 E-value=60 Score=26.53 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=68.5
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC--CCCcHHHHHHHH--cCCcE
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF--EPCGLIQLHAMR--YGTVP 503 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~--E~~gl~~lEAma--~G~Pv 503 (586)
...+++|+.+... ....+.++..+.+..+.. ..-+.+++...+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 8 ~~~~iLivdd~~~-~~~~l~~~L~~~g~~v~~-~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRL-AAATLRIQLESLGYDVLG-VFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHH-HHHHHHHHHHHHTCEEEE-EESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHH-HHHHHHHHHHHCCCeeEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 3567788776542 444455544444422321 1234445444443 36888876554 245666666665 47888
Q ss_pred EEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.... ..+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLA----------KPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEE----------ESCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEe----------CCCCHHHHHHHHHHHHhc
Confidence 6543222 23455678889997 999999999999999875
No 101
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=63.27 E-value=7.4 Score=35.17 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=26.4
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|+|++++. +|++| ..+++.|.++||+|.+++.+
T Consensus 1 M~~~~ilVtGa-------tG~iG---~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 1 MAVKKIAIFGA-------TGQTG---LTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CCCCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEEcC-------CcHHH---HHHHHHHHHCCCeEEEEEeC
Confidence 34578877664 35655 45788899999999998765
No 102
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=62.68 E-value=11 Score=32.42 Aligned_cols=41 Identities=15% Similarity=-0.128 Sum_probs=32.1
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.+|++||... .|+ ..........++...++.||+|.|+...
T Consensus 15 ~~kl~ii~~s-gP~--~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 15 XXXILIVVTH-GPE--DLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp CCEEEEEECC-CGG--GTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cceEEEEEcc-CCC--CHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 5789988876 565 4556667788999999999999988654
No 103
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=60.66 E-value=9.2 Score=31.52 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=30.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhC-CC-eEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GH-RVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh-~V~vvt~~ 127 (586)
||++|+-.. .|+ ..........++.++++. || +|.|+--.
T Consensus 2 ~k~~ii~~~-~p~--~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANG-APY--GSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECC-CTT--TCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcC-CCC--CcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 478888776 565 334555678899999999 99 99888754
No 104
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=60.15 E-value=33 Score=28.40 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=70.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHH-CCCceEEEeccChHHHHHHHHh---ccEEEEcCCCC--CCcHHHHHHHHc-----
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIAG---ADFILIPSRFE--PCGLIQLHAMRY----- 499 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~-~~~~v~~~~~~~~~~~~~~l~~---aDi~l~PS~~E--~~gl~~lEAma~----- 499 (586)
..+++|+.+... ....++++..+ .+..+ ...-+..++...+.. .|++++-.... .-|+.+++.+..
T Consensus 4 ~~~ilivdd~~~-~~~~l~~~L~~~~~~~v--~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 4 DGTVLLIDYFEY-EREKTKIIFDNIGEYDF--IEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHHHHCCCEE--EEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCeEEEEeCCHH-HHHHHHHHHHhccCccE--EEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 356777776543 45556665555 44333 233355666555554 68888765543 346667766654
Q ss_pred CCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 GTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+|+|.-.... ..+.+..|..+++. .|-++++|.++|.+++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYIL----------KPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEE----------SSCCTTHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCHHHHHHHHHHHHHh
Confidence 77886654322 33445678899998 999999999999999875
No 105
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=60.03 E-value=66 Score=25.84 Aligned_cols=109 Identities=13% Similarity=0.208 Sum_probs=67.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
+.+++|+.+.+. ....+..+....+..+. ..-+...+...+.. .|++++-... ..-|+-+++.+. ..+|+|
T Consensus 3 ~~~ilivdd~~~-~~~~l~~~l~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEEP-VRKSLAFMLTMNGFAVK--MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSHH-HHHHHHHHHHHTTCEEE--EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCHH-HHHHHHHHHHhCCcEEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456777777653 44555555555443332 23355555555543 5787765443 345677777664 367776
Q ss_pred EcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
... ... ..+.+..|..|++. .|.++++|.+.|.+++..
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFIE----------KPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHhCHHHhee----------CCCCHHHHHHHHHHHHHh
Confidence 543 222 33455678899998 999999999999988764
No 106
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=59.69 E-value=72 Score=26.21 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=69.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~P 502 (586)
..+++|+.+.+ .....+..+....+..+. ..-+..++...+.. .|++++=... +.-|+.+++.+.. .+|
T Consensus 4 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~p 80 (136)
T 3t6k_A 4 PHTLLIVDDDD-TVAEMLELVLRGAGYEVR--RAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLP 80 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCC
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCcc
Confidence 34666776654 244555555555553332 23355555555543 4888875543 4567778777753 577
Q ss_pred EEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|.-...+ ..+.+..|..+|+. .|-++++|.+.|.+++..
T Consensus 81 ii~~t~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 81 ILMLTAQGDISAKIAGFEAGANDYLA----------KPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEe----------CCCCHHHHHHHHHHHHhc
Confidence 76544322 23345678899998 999999999999999875
No 107
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=59.64 E-value=8.7 Score=33.26 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=30.9
Q ss_pred Cc-eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GL-NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~M-kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.| |++|+... +|+ ..-...-..+++.++++.||+|.|+--.
T Consensus 4 ~Mkk~~ivv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~Vff~~ 45 (136)
T 2hy5_B 4 VVKKFMYLNRK-APY--GTIYAWEALEVVLIGAAFDQDVCVLFLD 45 (136)
T ss_dssp -CCEEEEEECS-CTT--TSSHHHHHHHHHHHHGGGCCEEEEEECG
T ss_pred chhEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 47 49999865 676 3335556788999999999999988754
No 108
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=58.97 E-value=75 Score=26.15 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=65.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEEEc
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIVA 506 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~s 506 (586)
+++|+.+.+. ....++.+....+..+ ...-+..++...+. ..|++++-... +.-|+.+++.+. ..+|+|.-
T Consensus 6 ~ILivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 6 RVLLVEDSTS-LAILYKQYVKDEPYDI--FHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp EEEEECSCTT-HHHHHHHHTTTSSSEE--EEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEeCCHH-HHHHHHHHHHhcCceE--EEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5677776553 4445555544443223 22334555444443 36888875543 345677777665 35676554
Q ss_pred CCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 STGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.... ..+.+..|..+++. .|.++++|...|.+++..
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLE----------KPINADRLKTSVALHLKR 122 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 3222 33445678889998 999999999999988864
No 109
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=58.78 E-value=11 Score=36.65 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=32.2
Q ss_pred HHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.+++..+|+++--+..+..--.+..++..|+|+|+..+|...+
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 45577899999976665544444667899999999988775443
No 110
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=58.43 E-value=8.3 Score=35.33 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=25.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++. +|++| ..+++.|.++||+|.+++.+
T Consensus 1 MkvlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIGA-------TGRAG---SRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEcC-------CchhH---HHHHHHHHhCCCEEEEEEcC
Confidence 78777664 36666 45788899999999999865
No 111
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=58.02 E-value=1.2e+02 Score=28.12 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=70.1
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc---CCcE
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~---G~Pv 503 (586)
+..+++|+.+.+. ....+..+....+..+. ..-+..++...+. ..|++++=... +.-|+-+++.+.. .+|+
T Consensus 22 ~~~~ILivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 98 (250)
T 3r0j_A 22 PEARVLVVDDEAN-IVELLSVSLKFQGFEVY--TATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPA 98 (250)
T ss_dssp SSCEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CCceEEEEECCHH-HHHHHHHHHHHCCCEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3567888877543 44455555555543332 3335555555543 36888875543 4567777777753 5777
Q ss_pred EEcCC-cC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~-gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.. .. ..+.+..|..+++. .|.++++|..+|..++..
T Consensus 99 i~lt~~~~~~~~~~~~~~Ga~~yl~----------Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 99 LFLTARDSLQDKIAGLTLGGDDYVT----------KPFSLEEVVARLRVILRR 141 (250)
T ss_dssp EEEECSTTHHHHHHHHTSTTCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 65433 22 23345678899998 999999999999999864
No 112
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=57.91 E-value=1.1e+02 Score=27.90 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=65.1
Q ss_pred cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEec----------------cCh-HHHHHHHHhc
Q 007873 415 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK----------------FNI-PLAHMIIAGA 477 (586)
Q Consensus 415 KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~----------------~~~-~~~~~~l~~a 477 (586)
.+.+..-+....|.+..+.+|- |. .........+-+.+.++.+..+.. .+- .....+...|
T Consensus 42 ~~~~~A~~lg~~LA~~G~~vVs-Gg-~~GiM~aa~~gAl~~GG~~iGVlP~e~~~~~~~~~~~~~~~~f~~Rk~~m~~~s 119 (195)
T 1rcu_A 42 ELRDICLELGRTLAKKGYLVFN-GG-RDGVMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQMRSFVLLRNA 119 (195)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEE-CC-SSHHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEEe-CC-HHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCcceeeecCCCHHHHHHHHHHhC
Confidence 5555555555555556777665 63 333444444444443333333221 111 2233477788
Q ss_pred cEEEEcCCCCCCcHH--HHHHHHcCCcEEEcCCc-CcccccccC-cce-EEEccccccccCCCCCCHHHHHHHHHHH
Q 007873 478 DFILIPSRFEPCGLI--QLHAMRYGTVPIVASTG-GLVDTVEEG-FTG-FQMGSFSVDCEAVDPVDVAAVSTTVRRA 549 (586)
Q Consensus 478 Di~l~PS~~E~~gl~--~lEAma~G~PvI~s~~g-g~~e~v~~g-~~G-~~~~~~~~~~~~v~~~d~~~la~~I~~l 549 (586)
|.+|+-. -++|.- +.||+..|+||++-+.. .+.+.+..- ..| |+- ....++. .-.+|++++.+.|.+.
T Consensus 120 da~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~-~~~~~~i-~~~~~~ee~~~~l~~~ 192 (195)
T 1rcu_A 120 DVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLD-NRRIVEI-HQAWTVEEAVQIIEQI 192 (195)
T ss_dssp SEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSS-TTCCSCE-EEESSHHHHHHHHHTC
T ss_pred CEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCC-HHHcCeE-EEeCCHHHHHHHHHHH
Confidence 8887632 235543 88899999999998744 333333210 112 110 0000000 1346888888877643
No 113
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=57.76 E-value=84 Score=26.33 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=67.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
..+++|+.+... ....+.++....+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+. ..+|+|
T Consensus 14 ~~~ILivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 90 (153)
T 3hv2_A 14 RPEILLVDSQEV-ILQRLQQLLSPLPYTL--HFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRI 90 (153)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHTTSSCEE--EEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CceEEEECCCHH-HHHHHHHHhcccCcEE--EEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEE
Confidence 467777776542 4445555554444222 223355555555543 4787775543 456777777665 467776
Q ss_pred EcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-.... ..+.+..| ..+++. .|-++++|..+|.+++..
T Consensus 91 ~~s~~~~~~~~~~~~~~g~~~~~l~----------KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 91 LLTGDPDLKLIAKAINEGEIYRYLS----------KPWDDQELLLALRQALEH 133 (153)
T ss_dssp EECCCCCHHHHHHHHHTTCCSEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 654333 23344566 788987 999999999999999875
No 114
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=57.04 E-value=9 Score=35.27 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=25.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++. +|++| ..++++|.++||+|.+++.+
T Consensus 1 MkilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVLGA-------TGRAG---SAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEcC-------CCHHH---HHHHHHHHHCCCEEEEEEec
Confidence 78776654 36665 45888999999999999765
No 115
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=56.73 E-value=81 Score=25.86 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=65.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCCC-CCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRFE-PCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~E-~~gl~~lEAma---~G~PvI 504 (586)
..+++|+.+.. .....++++....+..+. ..-+..++...+.. .|++++-. .. .-|+.+++.+. ..+|+|
T Consensus 4 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 4 TPTVMVVDESR-ITFLAVKNALEKDGFNVI--WAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHGGGTCEEE--EESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 45677777654 244555555555443332 33355555555543 58887765 42 24555565554 357776
Q ss_pred EcCC-cC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~-gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-.. .. ..+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYIL----------KPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEE----------SSCCHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHCCcceeEe----------CCCCHHHHHHHHHHHHhh
Confidence 5432 22 23345568889987 999999999999999876
No 116
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=56.72 E-value=85 Score=26.07 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=65.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH-------cC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR-------YG 500 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma-------~G 500 (586)
..+++|+.+.+ .....++++..+.+..+. ..-+.+++...+.. .|++++=... +.-|+.+++.+. ..
T Consensus 14 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 14 SMRMLVADDHE-ANRMVLQRLLEKAGHKVL--CVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp -CEEEEECSSH-HHHHHHHHHHHC--CEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred cceEEEEeCCH-HHHHHHHHHHHHcCCeEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 46777877654 244555555554443332 22345555555543 5888875543 456777877774 23
Q ss_pred CcEEEcCCcCc----ccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~~gg~----~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|+|......- .+....|..+|+. .|-+.++|.++|.++...
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~----------KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLA----------KPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHC--
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheee----------CCCCHHHHHHHHHHHHHh
Confidence 67766543332 3344568899998 999999999999988754
No 117
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=56.68 E-value=75 Score=25.45 Aligned_cols=109 Identities=12% Similarity=0.186 Sum_probs=66.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCC-ceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~-~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~ 501 (586)
..+++|+.+.+ .....+..+....+. .+. ..-+..++...+.. .|++++-... +.-|+.+++.+.. .+
T Consensus 4 ~~~ilivdd~~-~~~~~l~~~l~~~~~~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 4 ELKFLVVDDFS-TMRRIVRNLLKELGFNNVE--EAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TCCEEEECSCH-HHHHHHHHHHHHTTCCCEE--EESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred ccEEEEECCCH-HHHHHHHHHHHHcCCcEEE--eeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 45677777654 244555555555442 222 12244444444443 5888775543 3467778888764 56
Q ss_pred cEEEcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+|... ... ..+.+..|..+++. .|-++++|.+.|.+++..
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVV----------KPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceee----------cCCCHHHHHHHHHHHHHH
Confidence 776543 222 33455678889998 999999999999988753
No 118
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=56.45 E-value=83 Score=25.86 Aligned_cols=111 Identities=10% Similarity=0.079 Sum_probs=70.0
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH------------hccEEEEcCCC-CCCcHHHHHHH
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA------------GADFILIPSRF-EPCGLIQLHAM 497 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~------------~aDi~l~PS~~-E~~gl~~lEAm 497 (586)
..+++|+.+.+. ....++++..+.+........-+..++...+. ..|++++=... +.-|+.+++.+
T Consensus 6 ~~~iLivdd~~~-~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 6 TQPLLVVEDSDE-DFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TSCEEEECCCHH-HHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CccEEEEECCHH-HHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 456777776542 45556665555553112222335555555665 35888876554 44677788877
Q ss_pred H-----cCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 498 R-----YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 498 a-----~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
. ..+|+|.-.... ..+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIV----------KPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 6 356776543222 23445668889998 999999999999999865
No 119
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=56.32 E-value=78 Score=25.52 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=67.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~-----G~P 502 (586)
..+++|+.+.+. ....+.++..+.+..+. ..-+..++...+. ..|++++-... +.-|+.+++.+.. ..|
T Consensus 6 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 6 SKRILVVDDDQA-MAAAIERVLKRDHWQVE--IAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp -CEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CccEEEEECCHH-HHHHHHHHHHHCCcEEE--EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 456777776542 44555555555443332 3335555555443 45887776554 4567888888763 344
Q ss_pred EEEcCCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|.+.... ..+.+..|..+++. .|.++++|.+.|.+....
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 83 ILVVSGLDKAKLQQAVTEGADDYLE----------KPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EEEECCSCSHHHHHHHHHTCCEEEC----------SSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCChHHHHHHHHhChHHHhh----------CCCCHHHHHHHHHHHcCC
Confidence 55544322 23445668889987 999999999999988764
No 120
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=56.21 E-value=8.1 Score=36.25 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=27.9
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++ +.. + .-|-.+...+|+.+|+++|++|.++=..
T Consensus 1 mkI~v-s~k--G---GvGKTt~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 1 MKLAV-AGK--G---GVGKTTVAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp CEEEE-ECS--S---SHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred CEEEE-ecC--C---CCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 78888 531 1 2344557888999999999999999655
No 121
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=55.25 E-value=81 Score=25.39 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=65.9
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc---CCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~---G~PvI 504 (586)
..+++|+.+.+. ....+.++..+.+..+. ..-+..++...+.. .|++++-... +.-|+.+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 7 GKQILIVEDEQV-FRSLLDSWFSSLGATTV--LAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TCEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCHH-HHHHHHHHHHhCCceEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 567788876543 45556665555553332 23356666555543 5888775543 4467777777653 56775
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCC-CHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~-d~~~la~~I~~ll~~ 552 (586)
.-.... ..+.+..|..+++. .|. +++.|.+.|.+++..
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLL----------KPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEE----------SCC---CHHHHHHHHHHC-
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEe----------CCCCcHHHHHHHHHHHhch
Confidence 543222 23455678899998 888 899999999999864
No 122
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=54.45 E-value=75 Score=27.89 Aligned_cols=109 Identities=13% Similarity=0.169 Sum_probs=69.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
..+++|+.+.+. ....+..+....+..+ ...-+..++...+.. .|++++-... +.-|+-+++.+. ..+|+|
T Consensus 7 ~~~iLivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 7 DKNFLVIDDNEV-FAGTLARGLERRGYAV--RQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHHHTTCEE--EEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCeEEEEcCCHH-HHHHHHHHHHHCCCEE--EEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 457777776542 4555656555555323 333356666555544 4887765443 345777777665 367776
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-.... ..+.+..|..+|+. .|-++++|.+.|..++..
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~----------KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLA----------KPANVESILAALQTNASE 125 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHTSTTHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHhee----------CCCCHHHHHHHHHHHHHH
Confidence 544322 33455678899998 999999999999988765
No 123
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=54.39 E-value=15 Score=30.82 Aligned_cols=39 Identities=21% Similarity=0.029 Sum_probs=29.3
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|++|+-.. +|+ ..-.+.-..+++.++.+.||+|.|+--.
T Consensus 3 k~~~vv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~vff~~ 41 (119)
T 2d1p_B 3 RIAFVFST-APH--GTAAGREGLDALLATSALTDDLAVFFIA 41 (119)
T ss_dssp CEEEEECS-CTT--TSTHHHHHHHHHHHHHTTCSCEEEEECG
T ss_pred EEEEEEcC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEeh
Confidence 58888776 676 3334456678999999999999888654
No 124
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=54.16 E-value=9.8 Score=40.32 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=31.2
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEecC
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRY 128 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~~ 128 (586)
++|+|+++.. | ..|--.-+..|++.|+++ ||+|+++++..
T Consensus 5 ~~~~vl~~p~---p---~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 5 KTPHVAIIPS---P---GMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp -CCEEEEECC---S---CHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CCcEEEEecC---c---chhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 3578888863 4 356666788999999998 99999999763
No 125
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=54.11 E-value=96 Score=25.92 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH---cCCcE
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVP 503 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma---~G~Pv 503 (586)
...+++|+.+.+. ....+..+....+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 6 ~~~~iLivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 6 KNYTVMLVDDEQP-ILNSLKRLIKRLGCNI--ITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp SCCEEEEECSCHH-HHHHHHHHHHTTTCEE--EEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEE
T ss_pred CCCeEEEEcCCHH-HHHHHHHHHHHcCCeE--EEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcE
Confidence 3567777776543 4455555555444333 233355555555543 5888875543 345666666664 36777
Q ss_pred EEcCCcC----cccccccC-cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g-~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.... ..+.+..| ..+++. .|.++++|.+.|.+++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~----------kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLL----------KPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeee----------CCCCHHHHHHHHHHHHHH
Confidence 6543222 22334455 789987 999999999999999875
No 126
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=53.99 E-value=9.3 Score=34.71 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=29.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+.|...- + .-|-.+...+|+..|+++|++|.++-..
T Consensus 1 M~vi~v~s~k-g---G~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPK-G---GSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSS-T---TSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCC-C---CccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 7877776531 1 2355568889999999999999999654
No 127
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=53.69 E-value=85 Score=25.16 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=67.3
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CCcEE
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTVPI 504 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~PvI 504 (586)
+++|+.+.+ .....+..+..+.+..+. ..-+..++...+.. .|++++-... +.-|+.+++.+.. .+|+|
T Consensus 4 ~ILivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 4 KVLLVDDSA-VLRKIVSFNLKKEGYEVI--EAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred eEEEEeCCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 566666654 244555555555553332 33356666555543 5888775543 4567888888743 57776
Q ss_pred EcCC-cC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 505 VAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 505 ~s~~-gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
.-.. +. ..+....|..+++. .|-++++|.+.|.++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~----------KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMR----------KPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhcc----------CCCCHHHHHHHHHHHhc
Confidence 5433 22 23344568899998 99999999999998874
No 128
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=53.56 E-value=87 Score=25.28 Aligned_cols=110 Identities=13% Similarity=0.207 Sum_probs=68.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH---hccEEEEcCCC-CCCcHHHHHHHHc-----CC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---GADFILIPSRF-EPCGLIQLHAMRY-----GT 501 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~---~aDi~l~PS~~-E~~gl~~lEAma~-----G~ 501 (586)
..+++|+.+.+ .....++++..+.+.... ...-+..+....+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 5 ~~~iLivdd~~-~~~~~l~~~L~~~g~~~v-~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 5 SMKLLVVDDSS-TMRRIIKNTLSRLGYEDV-LEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp -CCEEEECSCH-HHHHHHHHHHHHTTCCCE-EEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CcEEEEEeCCH-HHHHHHHHHHHHcCCcEE-EEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 34667777654 345556665555553211 22234444444442 36888765443 4568888888764 56
Q ss_pred cEEEcCC-cC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVAST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~~-gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+|.... .. ..+.+..|..+++. .|-++++|.+.|..++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIV----------KPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEE----------SCCCHHHHHHHHHHHHCC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEe----------CCCCHHHHHHHHHHHhcc
Confidence 7765443 22 23445678899998 999999999999998753
No 129
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=52.42 E-value=95 Score=25.37 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=62.8
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH-----cCCcE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVP 503 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma-----~G~Pv 503 (586)
.+++|+.+.. .....+.++.... ..+. ..-+..++...+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 4 ~~iLivdd~~-~~~~~l~~~l~~~-~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 4 KKILIIDQQD-FSRIELKNFLDSE-YLVI--ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTT-SEEE--EESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHhc-ceEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 4566776644 2444455544433 2222 2234555544443 35888776543 345666666665 46777
Q ss_pred EEcCC----cCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVAST----GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~----gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.. ....+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLT----------KPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeee----------CCCCHHHHHHHHHHHHhh
Confidence 65432 2344456678889998 999999999999999875
No 130
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=51.80 E-value=46 Score=26.00 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=62.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH-----cCCcEE
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVPI 504 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma-----~G~PvI 504 (586)
+++|+.+.+. ....+.+.....+..+. ..-+.+.+...+. ..|++++-... +.-|..+++.+. ..+|+|
T Consensus 3 ~iliv~~~~~-~~~~l~~~l~~~g~~v~--~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 3 HILLLEEEDE-AATVVCEMLTAAGFKVI--WLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp EEEEECCCHH-HHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred EEEEEeCCHH-HHHHHHHHHHhCCcEEE--EecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 5667766542 44455555555553333 2224444444443 35888776543 446777788775 456775
Q ss_pred EcC-CcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 505 VAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 505 ~s~-~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
.-. .....+....|..+++. .|-+.+++.+.|.+++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVDPLLTAQASAILS----------KPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSSHHHHHHCSEECS----------SCSTTHHHHHHHHTTC
T ss_pred EEeCCCCchhhhhcCHHHhcc----------CCCCHHHHHHHHHHHh
Confidence 543 22222555667778876 8899999999887765
No 131
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=51.51 E-value=94 Score=25.03 Aligned_cols=107 Identities=11% Similarity=0.017 Sum_probs=65.6
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc-----CCcE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVP 503 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~-----G~Pv 503 (586)
.+++|+.+... ....++.+.. .+..+ ...-+..++...+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 5 ~~ilivdd~~~-~~~~l~~~l~-~~~~v--~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 5 PKVLIVENSWT-MRETLRLLLS-GEFDC--TTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp CEEEEECSCHH-HHHHHHHHHT-TTSEE--EEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CEEEEEcCCHH-HHHHHHHHHh-CCcEE--EEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 46777776542 3444444443 23222 23335555555554 35787775543 4567777777764 6777
Q ss_pred EEcCCc---CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~g---g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-... ...+....|..+++. .|-++++|.+.|.+++..
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 81 IFVSGYAPRTEGPADQPVPDAYLV----------KPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp EEEESCCC-----TTSCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHhHHHHhhcCCceEEe----------ccCCHHHHHHHHHHHHhh
Confidence 654322 224455677888987 999999999999999986
No 132
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=51.16 E-value=92 Score=24.80 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=65.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH--cCCcEEEcC
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR--YGTVPIVAS 507 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma--~G~PvI~s~ 507 (586)
+++|+.+.+ .....++.+..+.+..+. ..-+.+++...+.. .|++++-... +.-|+.+++.+. ..+|+|.-.
T Consensus 4 ~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 4 KILVVDDEK-PIADILEFNLRKEGYEVH--CAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred eEEEEECCH-HHHHHHHHHHHhCCEEEE--EeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 566776654 244555555555553332 23355665555543 5887775543 345666776664 367776543
Q ss_pred CcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 508 TGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 508 ~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
... ..+.+..|..+++. .|-++++|...|.+++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVT----------KPFSTRELLARVKANLR 118 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHhCCcceeEc----------CCCCHHHHHHHHHHHHh
Confidence 222 23345678899998 99999999999988875
No 133
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=50.68 E-value=74 Score=25.38 Aligned_cols=107 Identities=11% Similarity=0.111 Sum_probs=65.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH-----cCCcEE
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR-----YGTVPI 504 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma-----~G~PvI 504 (586)
+++|+.+.+. ....+.......+..+. ..-+..+....+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 4 ~ilivdd~~~-~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEAP-IREMVCFVLEQNGFQPV--EAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCHH-HHHHHHHHHHHTTCEEE--EECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCHH-HHHHHHHHHHHCCceEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5667776542 44455555444443332 2224444444443 35777765443 335777777775 357776
Q ss_pred EcCCc----CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~g----g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-... ...+.+..|..+++. .|.+++++.+.|.+++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCIT----------KPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEE----------ESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEe----------CCCCHHHHHHHHHHHHhc
Confidence 54322 234556678889997 999999999999988764
No 134
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=50.39 E-value=1.6e+02 Score=27.27 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=95.7
Q ss_pred EEEEEecCccccCHHHHHHHHhhcccCC-eEEEEEeCCC-hhhHHHHHHHH-----------HHC---CC-ceEEEeccC
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIKEN-VQIIVLGTGK-KPMEKQLEQLE-----------ILY---PE-KARGVAKFN 466 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~~~-v~lvIvG~g~-~~~~~~l~~l~-----------~~~---~~-~v~~~~~~~ 466 (586)
+=-++||-...||+-.+.+--.++.+|. -.-++-|-.. +.+.. +++-. .+. |+ -....-.+-
T Consensus 199 inrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspafia-ikekgipyeyygnreidkmnlapnqpaqildcyi 277 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIA-IKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYI 277 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTTTTTCEEEEECCCCSHHHHH-HHHTTCCEEEECGGGGGGCCCSSSCCEEEESCCC
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcCccchhhhhhhhhcCCceEE-EcccCCchhhcCcchhhhhcCCCCCcchhhhhee
Confidence 4469999999999999999999988853 3344555322 21211 11110 000 11 123333444
Q ss_pred hHHHHHHHHhccEEEEcCC------CCCCcHHHHHHHHcCCcEEEcC-CcCccccc------ccCcceEEEccccccccC
Q 007873 467 IPLAHMIIAGADFILIPSR------FEPCGLIQLHAMRYGTVPIVAS-TGGLVDTV------EEGFTGFQMGSFSVDCEA 533 (586)
Q Consensus 467 ~~~~~~~l~~aDi~l~PS~------~E~~gl~~lEAma~G~PvI~s~-~gg~~e~v------~~g~~G~~~~~~~~~~~~ 533 (586)
..++.+-++.+.+.-.-|. .-..-.+-+|--|||+.+|-.. +|....+- .....|++.
T Consensus 278 nsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiw--------- 348 (401)
T 1xv5_A 278 NSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIW--------- 348 (401)
T ss_dssp HHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCEE---------
T ss_pred cHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceEE---------
Confidence 5566677888888777664 2467788999999999887764 33322211 123456543
Q ss_pred CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007873 534 VDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 566 (586)
Q Consensus 534 v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 566 (586)
.+.+|.++--+.|.++-.+ +..+.+-++.+.
T Consensus 349 fdendmestferikelssd--ralydrerekay 379 (401)
T 1xv5_A 349 FDENDMESTFERIKELSSD--RALYDREREKAY 379 (401)
T ss_dssp ECTTCHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred ecCCchHHHHHHHHHhccc--hhhhhHHHHHHH
Confidence 5999999999999999887 777766666554
No 135
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=50.20 E-value=1e+02 Score=25.18 Aligned_cols=111 Identities=10% Similarity=0.094 Sum_probs=66.8
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEE-eccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc---CCc
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTV 502 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~---G~P 502 (586)
...+++|+.+.+. ....+.++....++ +... ..-+..++...+.. .|++++-... +.-|+.+++.+.. ..|
T Consensus 8 ~~~~iLivdd~~~-~~~~l~~~L~~~~~-~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFL-AQQELSWLINTHSQ-MEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHH-HHHHHHHHHHHHSC-CEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHH-HHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3567888877653 34445544443321 3222 22345555555543 5888876544 4467778887754 344
Q ss_pred EE-EcCC-cCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PI-VAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI-~s~~-gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+| .+.. ....+.+..|..+++. .|-++++|.+.|.+++..
T Consensus 86 ii~~s~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 86 IVFITAWKEHAVEAFELEAFDYIL----------KPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEEEESCCTTHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHhCCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 44 3332 2233445678889997 999999999999999875
No 136
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=50.13 E-value=11 Score=34.62 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=25.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++. +|++| ..+++.|.++||+|.+++..
T Consensus 1 M~ilItGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIVGS-------TGRVG---KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEEST-------TSHHH---HHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 78777664 36665 46888999999999999865
No 137
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=50.08 E-value=1.1e+02 Score=25.46 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=68.0
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEE-eccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc---CCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~---G~Pv 503 (586)
..+++|+.+... ....+.++.....+ .... ..-+..++...+.. .|++++-... +.-|+.+++.+.. .+|+
T Consensus 5 ~~~ILivdd~~~-~~~~l~~~L~~~~~-~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPI-VREGYRRLIERRPG-YAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHH-HHHHHHHHHTTSTT-EEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHH-HHHHHHHHHhhCCC-cEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 467777776542 44555555544222 3323 23355555555543 5888875543 3456777766643 6777
Q ss_pred EEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+..... ..+.+..|..|++. .|.++++|.+.|.+++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVT----------KSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEE----------TTSCTTHHHHHHHHHTTT
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEe----------cCCCHHHHHHHHHHHHhC
Confidence 6543222 33445678899998 999999999999999875
No 138
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=49.89 E-value=14 Score=35.14 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=29.4
Q ss_pred CCceEEEEeccccCccccchHH--HHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~--~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++|||+.|... .||+| +...+||.+|+++|++|.++=..
T Consensus 4 ~~~~vI~v~s~------kGGvGKTt~a~~LA~~la~~g~~VlliD~D 44 (257)
T 1wcv_1 4 AKVRRIALANQ------KGGVGKTTTAINLAAYLARLGKRVLLVDLD 44 (257)
T ss_dssp -CCCEEEECCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEEEeC------CCCchHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 46787777653 45555 57888999999999999999544
No 139
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=49.86 E-value=12 Score=35.78 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=28.2
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..- =.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (244)
T 2e6c_A 1 MRILVTNDDG-------IYSPGLWALAEAASQFG-EVFVAAPDTE 37 (244)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEECSS
T ss_pred CeEEEEcCCC-------CCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 8998888752 12334778999998888 9999999754
No 140
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=49.56 E-value=1.3e+02 Score=27.06 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH---------------hccEEEEcCCC-CCCcHHH
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA---------------GADFILIPSRF-EPCGLIQ 493 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~---------------~aDi~l~PS~~-E~~gl~~ 493 (586)
...+++|+.+.+. ....+.++....+.. .....-+..++..++. ..|++|+=... +.-|+-+
T Consensus 60 ~~~~ILiVdDd~~-~~~~l~~~L~~~g~~-~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 60 RGKRVLVVDDNFI-SRKVATGKLKKMGVS-EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTCEEEEECSCHH-HHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred CCCEEEEEeCCHH-HHHHHHHHHHHcCCC-eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 3567777776542 455566665555521 2222335555555554 36888876543 4567777
Q ss_pred HHHHH-------cCCcEEEcCCcC-----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 494 LHAMR-------YGTVPIVASTGG-----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 494 lEAma-------~G~PvI~s~~gg-----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
++.+. ..+|+|...... ..+.+..|..+|+. .|-+ +|.+.|.+++..
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~----------KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLD----------KSLN--QLANVIREIESK 196 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEE----------TTCT--THHHHHHHHC--
T ss_pred HHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEc----------CcHH--HHHHHHHHHHhh
Confidence 77765 457876554322 23345668899997 7877 899999988875
No 141
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=49.32 E-value=13 Score=35.83 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=28.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..- =.+.-+..|.++|.+.| +|.|++|..+
T Consensus 2 M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~ 38 (251)
T 2phj_A 2 PTFLLVNDDG-------YFSPGINALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CEEEEECCCC-------CCCHHHHHHHHHHHhcC-CEEEEecCCC
Confidence 8999988762 12334778999999988 9999999754
No 142
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=49.06 E-value=1.4e+02 Score=28.74 Aligned_cols=143 Identities=11% Similarity=-0.005 Sum_probs=80.2
Q ss_pred CcEEEEEecCc--cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--ChHHHHHHHHhc
Q 007873 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGA 477 (586)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~a 477 (586)
.|+++ .+-.. .+.|++.+++.+.+. .+.-+|+.+-+.+....+.+...+++....+...- +.+.+..+.+.+
T Consensus 98 ~Pivl-m~Y~n~v~~~g~~~f~~~~~~a---GvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~ 173 (271)
T 3nav_A 98 TPIGL-LMYANLVYARGIDDFYQRCQKA---GVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG 173 (271)
T ss_dssp SCEEE-EECHHHHHHTCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC
T ss_pred CCEEE-EecCcHHHHHhHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC
Confidence 35554 35443 577999999998886 66777777766444556667777777555555544 346666777777
Q ss_pred cEEEEc-CCC------CCCcHHHHHHHH-----cCCcEEEcCCcCcc--c----ccccCcceEEEccccccccCCCCCCH
Q 007873 478 DFILIP-SRF------EPCGLIQLHAMR-----YGTVPIVASTGGLV--D----TVEEGFTGFQMGSFSVDCEAVDPVDV 539 (586)
Q Consensus 478 Di~l~P-S~~------E~~gl~~lEAma-----~G~PvI~s~~gg~~--e----~v~~g~~G~~~~~~~~~~~~v~~~d~ 539 (586)
.-|+.. |+. ...+..+.|.+. ..+|+++ -+|+. | .+..+..|.++|+-.+....-...++
T Consensus 174 ~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v--GfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~~~~~~ 251 (271)
T 3nav_A 174 KGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALL--GFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNP 251 (271)
T ss_dssp CSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHTTTCH
T ss_pred CCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEE--ECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhhccch
Confidence 544433 432 123433333332 3788887 33432 2 45578899999754443222112234
Q ss_pred HHHHHHHHHHH
Q 007873 540 AAVSTTVRRAL 550 (586)
Q Consensus 540 ~~la~~I~~ll 550 (586)
++..+.+.+++
T Consensus 252 ~~~~~~~~~~~ 262 (271)
T 3nav_A 252 AKQLTELANFT 262 (271)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 143
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=48.63 E-value=22 Score=32.18 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=31.8
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
-|||++|... | +|.....+..+++.+.+.|++|.++...
T Consensus 5 M~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 5 SPYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred cceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 3699999764 4 5778888888999999999999988654
No 144
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=48.55 E-value=1.8e+02 Score=27.32 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=69.5
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh---ccEEEEcCCC-CCCcHHHHHHHHc-----C
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY-----G 500 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~---aDi~l~PS~~-E~~gl~~lEAma~-----G 500 (586)
...+++|+-+.+. ....+.......+..+ ...-++.++...+.. .|++++=-.. +.-|+-+++.+.. .
T Consensus 123 ~~~~ILivDD~~~-~~~~l~~~L~~~~~~v--~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 123 QQIEVLVVDDSRT-SRHRTMAQLRKQLLQV--HEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp TTCEEEEECSCHH-HHHHHHHHHHTTTCEE--EEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTT
T ss_pred CCCcEEEEeCCHH-HHHHHHHHHHHcCcEE--EEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCC
Confidence 5778888887653 3334444434433222 233366666666654 3677765443 4467778777753 4
Q ss_pred CcEEEcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|+|+.. ... ..+.+..|..+|+. .|-++++|...|.++++.
T Consensus 200 ~~ii~~s~~~~~~~~~~a~~~Ga~~yl~----------KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 200 LAIIGISVSDKRGLSARYLKQGANDFLN----------QPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp SEEEEEECSSSSSHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEccCCHHHHHHHHhcChhheEc----------CCCCHHHHHHHHHHHHHh
Confidence 6776433 222 22335678999998 999999999999999875
No 145
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=48.46 E-value=1.5e+02 Score=26.65 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=69.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
..+++|+.+.+. ....+..+....+..+ ...-+..++...+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 7 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 7 SPRVLVVDDDSD-VLASLERGLRLSGFEV--ATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHHHTTCEE--EEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCHH-HHHHHHHHHHhCCCEE--EEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456777776552 4445555555544333 23335555555554 35888775543 446777777775 467876
Q ss_pred EcCC----cCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VAST----GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~----gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-.. ....+.+..|..|++. .|.++++|.++|..++..
T Consensus 84 ~lt~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 84 VLSARSSVDDRVAGLEAGADDYLV----------KPFVLAELVARVKALLRR 125 (233)
T ss_dssp EEECCCTTTCCCTTTTTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 5432 2234556678899998 999999999999998864
No 146
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=48.42 E-value=13 Score=35.62 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=28.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..- =.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~ 37 (247)
T 1j9j_A 1 MRILVTNDDG-------IQSKGIIVLAELLSEEH-EVFVVAPDKE 37 (247)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CeEEEEcCCC-------CCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 8998888752 12234778999998887 9999999754
No 147
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=47.67 E-value=19 Score=31.72 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=30.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+++-.+ + +|.+..++..+++.|.+.|++|.++-..
T Consensus 1 Mkv~IvY~S--~---tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYLS--D---YGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEECT--T---STTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEEC--C---ChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 788887543 3 6999999999999999999999888644
No 148
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=47.56 E-value=19 Score=34.04 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=29.5
Q ss_pred CceEEEEeccccCccccch-HHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGG-LGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG-~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|||++|... |. .+| ....+..+.+.|.+.||+|.++-..
T Consensus 1 ~mkiLiI~gs--pr--~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 1 GKKVLIVYAH--QE--PKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCEEEEEEeC--CC--CCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 4899999975 53 344 4455666788888889999999654
No 149
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=47.52 E-value=12 Score=37.84 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.9
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEE
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vv 124 (586)
.|||++|+.- | .|+. +|..|+++|++|+|+
T Consensus 1 sm~V~IVGaG--p----aGl~-----~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIGAG--I----GGTC-----LAHGLRKHGIKVTIY 30 (412)
T ss_dssp CCEEEEECCS--H----HHHH-----HHHHHHHTTCEEEEE
T ss_pred CCEEEEECcC--H----HHHH-----HHHHHHhCCCCEEEE
Confidence 3999999963 3 5665 888999999999998
No 150
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=47.43 E-value=1.5e+02 Score=28.42 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=71.4
Q ss_pred CcEEEEEecCc--cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--ChHHHHHHHHhc
Q 007873 402 IPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGA 477 (586)
Q Consensus 402 ~~~i~~iGrl~--~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~a 477 (586)
.|+++ .+-.. .+.|++.+++.+.+. .+.-+|+.+-+.+....+.+...+++-...+...- +.+.+..+.+.+
T Consensus 96 ~Pivl-m~Y~npv~~~g~e~f~~~~~~a---Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~ 171 (267)
T 3vnd_A 96 MPIGL-LLYANLVFANGIDEFYTKAQAA---GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG 171 (267)
T ss_dssp CCEEE-EECHHHHHHHCHHHHHHHHHHH---TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC
T ss_pred CCEEE-EecCcHHHHhhHHHHHHHHHHc---CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 35444 34444 467999999998886 66777777766434455666666777544444443 346677788888
Q ss_pred c-EEEEcCCCCC------CcHHHHHHHH-----cCCcEEEcCCcCcc--c----ccccCcceEEEccccc
Q 007873 478 D-FILIPSRFEP------CGLIQLHAMR-----YGTVPIVASTGGLV--D----TVEEGFTGFQMGSFSV 529 (586)
Q Consensus 478 D-i~l~PS~~E~------~gl~~lEAma-----~G~PvI~s~~gg~~--e----~v~~g~~G~~~~~~~~ 529 (586)
+ ++-+.|..-. ++-.+.|.+. ..+|+++ .+|+. | .+..+..|+++|+-.+
T Consensus 172 ~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~v--GfGI~~~e~~~~~~~~gADgvVVGSaiv 239 (267)
T 3vnd_A 172 EGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLL--GFGIAEPEQVRAAIKAGAAGAISGSAVV 239 (267)
T ss_dssp CSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEE--CSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEE--ECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 6 4444455322 2211222222 3678776 34442 3 4557889999974433
No 151
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=47.14 E-value=16 Score=35.95 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=30.0
Q ss_pred HHHHHHhccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCcCcc
Q 007873 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 512 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~gg~~ 512 (586)
+.+++..+|++|--+..+..--.+..++..|+|+|+..+|...
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 4457789999986555443333355688899999998877544
No 152
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=46.96 E-value=1.1e+02 Score=24.28 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=64.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc-----CCcEE
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY-----GTVPI 504 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~-----G~PvI 504 (586)
+++|+.+.+ .....++.+....+..+. ...+..++...+. ..|++++=... +.-|+.+++.+.. .+|+|
T Consensus 3 ~ilivdd~~-~~~~~l~~~L~~~~~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 3 KVLIVEDNE-LNMKLFHDLLEAQGYETL--QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred EEEEEcCCH-HHHHHHHHHHHHcCcEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 456666554 344555555555543332 2335555544443 36888875543 3457777777753 56776
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-.... ..+....|..+++. .|.++++|.+.|.+++..
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYIS----------KPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEEC----------SSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEe----------CCCCHHHHHHHHHHHHhc
Confidence 653222 23344568889987 999999999999988753
No 153
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=46.89 E-value=66 Score=26.65 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=64.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCC-CceEEEeccChH-HHHHHH---HhccEEEEcCCC-CCCcHHHHHHHHc---CC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIP-LAHMII---AGADFILIPSRF-EPCGLIQLHAMRY---GT 501 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~-~~v~~~~~~~~~-~~~~~l---~~aDi~l~PS~~-E~~gl~~lEAma~---G~ 501 (586)
..+++|+.+... ....++++....+ ..+. ...+.. .+..+. ...|++++-... +.-|+.+++.+.. .+
T Consensus 20 ~~~ilivdd~~~-~~~~l~~~L~~~g~~~v~--~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 20 MINILVASEDAS-RLAHLARLVGDAGRYRVT--RTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GCEEEEECSCHH-HHHHHHHHHHHHCSCEEE--EECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred CCeEEEEeCCHH-HHHHHHHHHhhCCCeEEE--EeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 566777766542 3444444444444 2232 222333 222233 346888775543 3345666665543 67
Q ss_pred cEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+|.-.... ..+.+..|..+++. .|-++++|...|.+++..
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLR----------WPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEE----------SSCCHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEc----------CCCCHHHHHHHHHHHHhh
Confidence 776543222 33455678899998 999999999999999875
No 154
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=46.60 E-value=14 Score=36.56 Aligned_cols=39 Identities=28% Similarity=0.473 Sum_probs=28.4
Q ss_pred eecCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 79 IVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 79 ~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
....++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 15 ~~~~~~~~vlVTGa-------sG~iG---~~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 15 VPRGSHMRILITGG-------AGCLG---SNLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp CSTTTCCEEEEETT-------TSHHH---HHHHHHHGGGTCEEEEEECC
T ss_pred cccCCCCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 33456788887664 46666 45788899999999998764
No 155
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=46.39 E-value=21 Score=29.80 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=23.9
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+.|+|++++. |.+| ..+++.|.+.||+|.++...
T Consensus 3 ~~m~i~IiG~--------G~iG---~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 3 HGMYIIIAGI--------GRVG---YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp --CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 3589988863 3333 34788899999999998654
No 156
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=45.88 E-value=15 Score=36.01 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=28.2
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
||||+.+..- =.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 M~ILlTNDDG-------i~ApGi~aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 1 MKILVTNDDG-------VHSPGLRLLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHGGGS-EEEEEEESSC
T ss_pred CeEEEEcCCC-------CCcHhHHHHHHHHHhCC-CEEEEecCCC
Confidence 8999888762 12234777899999888 9999999754
No 157
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=45.39 E-value=16 Score=36.08 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=25.0
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|++|+|++.+. +|++| ..+++.|.++||+|.++...
T Consensus 1 m~~~~vlVtGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 36 (345)
T 2z1m_A 1 MSGKRALITGI-------RGQDG---AYLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp --CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCCCEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEECC
Confidence 34677776654 36655 45788899999999988754
No 158
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=45.27 E-value=16 Score=32.93 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=24.3
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++|||++.+. .||+| ..+++.|+ +||+|.++...
T Consensus 2 ~kM~vlVtGa-------sg~iG---~~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 2 NAMKILLIGA-------SGTLG---SAVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp CSCEEEEETT-------TSHHH---HHHHHHHT-TTSEEEEEESS
T ss_pred CCcEEEEEcC-------CcHHH---HHHHHHHH-CCCeEEEEecC
Confidence 4588766654 46666 45788888 99999888654
No 159
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=44.78 E-value=16 Score=33.61 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++. +|++| ..+++.|.++||+|.+++..
T Consensus 5 ~~ilItGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 5 KKIVLIGA-------SGFVG---SALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CEEEEETC-------CHHHH---HHHHHHHHTTTCEEEEECSC
T ss_pred CEEEEEcC-------CchHH---HHHHHHHHHCCCEEEEEEcC
Confidence 56665543 35554 45888999999999999765
No 160
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=44.68 E-value=16 Score=35.54 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=27.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+.|+..- + .-|-.+...+|+.+|+++|++|.++=..
T Consensus 4 ~kvI~v~s~K-G---GvGKTT~a~nLA~~La~~G~~VlliD~D 42 (286)
T 2xj4_A 4 TRVIVVGNEK-G---GAGKSTIAVHLVTALLYGGAKVAVIDLD 42 (286)
T ss_dssp CEEEEECCSS-S---CTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcCC-C---CCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4666665431 1 2345568889999999999999998554
No 161
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=44.58 E-value=18 Score=34.67 Aligned_cols=35 Identities=34% Similarity=0.391 Sum_probs=25.2
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|||++++ . |++| ..|++.|.++||+|.+++..
T Consensus 1 M~~~~ilVtG-a-------G~iG---~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 1 MSLSKILIAG-C-------GDLG---LELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp -CCCCEEEEC-C-------SHHH---HHHHHHHHHTTCCEEEEECT
T ss_pred CCCCcEEEEC-C-------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4567888775 2 3444 34788999999999999865
No 162
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=44.23 E-value=26 Score=29.98 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=30.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+++-.+ .+|....++..+++.|.+.|++|.++...
T Consensus 2 ~ki~I~y~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 2 SKVLIVFGS-----STGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp CEEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 577777543 37888999999999999999999998654
No 163
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=44.20 E-value=48 Score=28.84 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=38.5
Q ss_pred CcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 501 TVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 501 ~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-|-.+..||++.+.-+|..-+. +..+|.+.++|.|++.|.+.|..++++
T Consensus 67 ~eveg~sGgGlVkVtvnG~~ev~--~I~Idp~lldpeD~E~LeDLI~aAvNd 116 (143)
T 1ybx_A 67 KTVEASAGGGAVTVVATGRKDIK--EITIKPEVVDPDDVEMLQDLILAAVNE 116 (143)
T ss_dssp CEEEEEETTTTEEEEEETTCCEE--EEEECGGGCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCEEEEEEecCceEE--EEEECHHHcCCcCHHHHHHHHHHHHHH
Confidence 44667777888888877643222 456788889999999999999999987
No 164
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=43.28 E-value=2.6e+02 Score=29.09 Aligned_cols=136 Identities=14% Similarity=0.054 Sum_probs=76.4
Q ss_pred CCcEEEEEecCccccCHHHHHHHHhhccc----CCeEEEEEeCCChhhHHHHHHHHHH------CCCceEEEec-c----
Q 007873 401 NIPVIGFIGRLEEQKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEIL------YPEKARGVAK-F---- 465 (586)
Q Consensus 401 ~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~----~~v~lvIvG~g~~~~~~~l~~l~~~------~~~~v~~~~~-~---- 465 (586)
...+++|.|.-.- -+...+++.++.+ ..+.++ .|.|+--|+......... .++.+.+... +
T Consensus 144 ~~~ivVv~GSs~~---~~~~Ye~A~eLGr~LA~~G~~LV-tGGG~GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~ 219 (460)
T 3bq9_A 144 EPNMVVCWGGHSI---NEIEYKYTKDVGYHIGLRGLNIC-TGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAA 219 (460)
T ss_dssp CSCEEEEECCSSC---CHHHHHHHHHHHHHHHHTTCEEE-ECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTT
T ss_pred CCCEEEEEcCCCC---CCHHHHHHHHHHHHHHHCCCEEE-eCCcHHHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhh
Confidence 3457788876542 2223355555543 465555 566654454555555444 3445555531 1
Q ss_pred -------------C--hHHHHHHHHhccEEEEcCCCCCCcHH--HHHHHH---------cCCcEEEcC---CcCccc-cc
Q 007873 466 -------------N--IPLAHMIIAGADFILIPSRFEPCGLI--QLHAMR---------YGTVPIVAS---TGGLVD-TV 515 (586)
Q Consensus 466 -------------~--~~~~~~~l~~aDi~l~PS~~E~~gl~--~lEAma---------~G~PvI~s~---~gg~~e-~v 515 (586)
. ......++..||.+|.- --++|.- ++|++. .++|||..+ +.|..+ ++
T Consensus 220 E~~N~~vtelIiv~~m~eRK~~mv~~SDAfIaL--PGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll 297 (460)
T 3bq9_A 220 EPPNPIVNELVILPDIEKRLEAFVRCAHGIVIF--PGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALD 297 (460)
T ss_dssp SCCCTTCSEEEECSSHHHHHHHHHHHCSEEEEC--SCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHH
T ss_pred hhcCCCCCeEEEECCHHHHHHHHHHhCCEEEEc--CCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHH
Confidence 0 12233478889988752 2356665 777777 589999986 344333 21
Q ss_pred -------cc-CcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 516 -------EE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 516 -------~~-g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+ ....+++ -.+|++++.+.+.+.+..
T Consensus 298 ~~l~~~l~~~~~~~~ii----------v~ddpeEal~~l~~~~~~ 332 (460)
T 3bq9_A 298 EFIGATIGDEARQLYKI----------IIDDPAAVAQHMHAGMAA 332 (460)
T ss_dssp HHHHHHTCTTGGGGCEE----------EESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhcCcEE----------EeCCHHHHHHHHHHHHHH
Confidence 11 1222221 348999999999888775
No 165
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=43.27 E-value=1.1e+02 Score=27.62 Aligned_cols=106 Identities=12% Similarity=0.094 Sum_probs=65.6
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCC-CCCcHHHHHHHH---cCCcEEEcCC
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMR---YGTVPIVAST 508 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~s~~ 508 (586)
+++|+.+.+ .....+..+....+ .+ ...-+..++...+...|++++-... +.-|+.+++.+. ..+|+|.-..
T Consensus 4 ~ilivdd~~-~~~~~l~~~L~~~~-~v--~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 79 (220)
T 1p2f_A 4 KIAVVDDDK-NILKKVSEKLQQLG-RV--KTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTL 79 (220)
T ss_dssp EEEEECSCH-HHHHHHHHHHTTTE-EE--EEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEeCCH-HHHHHHHHHHHhCC-CE--EEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEc
Confidence 566676654 24445555544433 22 2222444444444667888875443 445777777665 4678765532
Q ss_pred cC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 509 GG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 509 gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.. ..+.+..|..|++. .|.++++|.++|..++..
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 80 LSDDESVLKGFEAGADDYVT----------KPFNPEILLARVKRFLER 117 (220)
T ss_dssp CCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEE----------CCCCHHHHHHHHHHHHcc
Confidence 22 33445568899998 999999999999999864
No 166
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=43.18 E-value=1.3e+02 Score=24.16 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=65.9
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEE-eccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc----CCcE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY----GTVP 503 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~----G~Pv 503 (586)
.+++|+.+.+ .....++++....++ .... ..-+.+++...+. ..|++++=... +.-|+-+++.+.. ..|+
T Consensus 3 ~~ilivdd~~-~~~~~l~~~l~~~~~-~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNR-ELVSLLDEYISSQPD-MEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCH-HHHHHHHHHHHTSTT-EEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCH-HHHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 4566776544 345556665554422 3222 2235555555544 35888875543 3457777776642 4556
Q ss_pred EEc-CCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVA-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s-~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.. ..+. ..+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFIL----------KPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEE----------CSSCCTTHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHhcC
Confidence 543 3222 33445678899998 999999999999998875
No 167
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=43.05 E-value=31 Score=31.59 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=32.0
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|... | .|-....+..+++.+.+.|++|.++-..
T Consensus 6 mmkilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 6 PVKLAIVFYS--S---TGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEEEC--C---CChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 4799999754 4 5778888888999999999999998654
No 168
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=42.99 E-value=15 Score=34.34 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=29.3
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~ 127 (586)
+.|||+.|...- + .-|-.+...+|+.+|+++ |++|.++=..
T Consensus 2 ~~~~vI~v~s~k-G---GvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 2 NAKRVFGFVSAK-G---GDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp -CCEEEEEEESS-T---TSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CCCeEEEEECCC-C---CcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 357777666531 1 235556788899999999 9999999654
No 169
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=42.89 E-value=18 Score=35.89 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=25.4
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|++|+|++++. +|++|. .++++|.+.||+|.+++..
T Consensus 8 M~~~~IlVtGa-------tG~iG~---~l~~~L~~~g~~V~~l~R~ 43 (346)
T 3i6i_A 8 SPKGRVLIAGA-------TGFIGQ---FVATASLDAHRPTYILARP 43 (346)
T ss_dssp ---CCEEEECT-------TSHHHH---HHHHHHHHTTCCEEEEECS
T ss_pred CCCCeEEEECC-------CcHHHH---HHHHHHHHCCCCEEEEECC
Confidence 55678888775 366653 4778888999999999865
No 170
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=42.88 E-value=28 Score=32.68 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=32.6
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
++||.+||+..- + .-|-..+...|+++|+++|++|..+=|
T Consensus 2 ~~mk~i~Itgt~-t---~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 2 NAMKKFFIIGTD-T---EVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp TTCEEEEEEESS-S---SSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCcEEEEEeCC-C---CCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 579999998752 3 457777899999999999999998754
No 171
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=42.64 E-value=19 Score=34.62 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=28.3
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCC
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~ 129 (586)
.||||+.+..- =.+.-+..|.++|.+.| +|.|++|..+
T Consensus 1 ~M~ILlTNDDG-------i~apGi~aL~~~L~~~g-~V~VVAP~~~ 38 (254)
T 2v4n_A 1 SMRILLSNDDG-------VHAPGIQTLAKALREFA-DVQVVAPDRN 38 (254)
T ss_dssp CCEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CCeEEEEcCCC-------CCCHHHHHHHHHHHhCC-cEEEEeeCCC
Confidence 38999888762 12234777889998875 9999999754
No 172
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=42.35 E-value=39 Score=29.57 Aligned_cols=42 Identities=19% Similarity=-0.014 Sum_probs=28.0
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+.+.||++++-. +|- ..-.......|+..|.++||+|+|.+-
T Consensus 3 ~~~~m~~LilLG--CPE--~Pvq~p~~lYl~~~Lk~~G~~v~VA~n 44 (157)
T 1kjn_A 3 TESTGKALMVLG--CPE--SPVQIPLAIYTSHKLKKKGFRVTVTAN 44 (157)
T ss_dssp ---CCEEEEECC--CSC--STTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccceeeeEEec--CCC--CcchhhHHHHHHHHHHhcCCeeEEecC
Confidence 345799888854 232 233444666788999999999999863
No 173
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=42.04 E-value=1.4e+02 Score=24.24 Aligned_cols=110 Identities=4% Similarity=0.034 Sum_probs=65.0
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh---ccEEEEcCCC-CCCcHHHHHHHHc---CCc
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG---ADFILIPSRF-EPCGLIQLHAMRY---GTV 502 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~---aDi~l~PS~~-E~~gl~~lEAma~---G~P 502 (586)
+..+++|+.+... ....+.++....+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+.. .+|
T Consensus 14 ~~~~ilivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ 90 (138)
T 2b4a_A 14 QPFRVTLVEDEPS-HATLIQYHLNQLGAEV--TVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPS 90 (138)
T ss_dssp CCCEEEEECSCHH-HHHHHHHHHHHTTCEE--EEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCE
T ss_pred CCCeEEEECCCHH-HHHHHHHHHHHcCCEE--EEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCC
Confidence 4677788776553 4445555555544323 223345555555544 6888876554 3467778887764 567
Q ss_pred EEEcC-CcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~-~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|.-. ...-.+....-..+++. .|.++++|...|.+++..
T Consensus 91 ii~ls~~~~~~~~~~~~~~~~l~----------KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 91 VLILTTGRHELIESSEHNLSYLQ----------KPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EEEEESCC--CCCCSSSCEEEEE----------SSCCHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHheee----------CCCCHHHHHHHHHHHHHh
Confidence 65443 21111111111678887 999999999999988765
No 174
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=41.77 E-value=24 Score=30.10 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=30.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+++-.+ + +|....++..+++.|.+.|++|.++...
T Consensus 1 mki~iiy~S--~---~Gnt~~~a~~i~~~l~~~g~~v~~~~~~ 38 (147)
T 1f4p_A 1 PKALIVYGS--T---TGNTEYTAETIARELADAGYEVDSRDAA 38 (147)
T ss_dssp CEEEEEEEC--S---SSHHHHHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CeEEEEEEC--C---cCHHHHHHHHHHHHHHhcCCeeEEEehh
Confidence 788887532 3 6888888999999999999999888643
No 175
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=41.72 E-value=2.4e+02 Score=26.96 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=71.4
Q ss_pred HHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCCC--CCcHH---H
Q 007873 422 AAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRFE--PCGLI---Q 493 (586)
Q Consensus 422 ~A~~~l~~-~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~E--~~gl~---~ 493 (586)
++...+.. ...+++++.+.+ .....+..+-...+..+.. ..-++.++...+.. .|++++=-..- .-|+- .
T Consensus 150 rA~~~Lr~~l~~rILvVdD~~-~~~~~l~~~L~~~g~~v~~-~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ 227 (286)
T 3n0r_A 150 DAQAEIDAELATEVLIIEDEP-VIAADIEALVRELGHDVTD-IAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKD 227 (286)
T ss_dssp HHHHHHHTSCCCEEEEECCSH-HHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHH
T ss_pred HHHhhhhccCCCcEEEEcCCH-HHHHHHHHHhhccCceEEE-EeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHH
Confidence 34444443 345666666544 3556666666666633321 34477777666664 47877643321 12332 3
Q ss_pred HHHHHcCCcEEEcCC--cCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 494 LHAMRYGTVPIVAST--GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 494 lEAma~G~PvI~s~~--gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-... .+|||+-.. ....+.+..|.++++. .|-++++|...|.+++..
T Consensus 228 ir~~~-~~piI~lT~~~~~~~~~~~~G~~~~l~----------KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 228 ILGRM-DVPVIFITAFPERLLTGERPEPTFLIT----------KPFQPETVKAAIGQALFF 277 (286)
T ss_dssp HHHHT-TCCEEEEESCGGGGCCSSSCCCSSEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCEEEEeCCHHHHHHHHhCCCcEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 33334 899876542 2233445568888998 999999999999999976
No 176
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=40.62 E-value=58 Score=32.58 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=34.3
Q ss_pred HHHHHHhccEEEE--cCCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~--PS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++ |..-|+ ++-..+..|--|.-+|-+..|++.+
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVd 236 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD 236 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccccc
Confidence 4569999999875 444455 5566888888899999999998766
No 177
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=40.54 E-value=20 Score=36.23 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=28.2
Q ss_pred ceEEEEeccccCccccchHH--HHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~--~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+-|... .||+| +...+||.+|+++|++|.+|=..
T Consensus 1 MkvIav~s~------KGGvGKTT~a~nLA~~LA~~G~rVLlID~D 39 (361)
T 3pg5_A 1 MRTISFFNN------KGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39 (361)
T ss_dssp CEEEEBCCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 677666643 45555 47788999999999999999654
No 178
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=40.46 E-value=46 Score=27.37 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCc
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY 131 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~ 131 (586)
+.|||+++... ..+.+..+..+-++..++|.+|.+.+..+...
T Consensus 5 ~~mkIlL~C~a------GmSTsllv~km~~~a~~~gi~v~i~a~~~~~~ 47 (108)
T 3nbm_A 5 KELKVLVLCAG------SGTSAQLANAINEGANLTEVRVIANSGAYGAH 47 (108)
T ss_dssp CCEEEEEEESS------SSHHHHHHHHHHHHHHHHTCSEEEEEEETTSC
T ss_pred cCceEEEECCC------CCCHHHHHHHHHHHHHHCCCceEEEEcchHHH
Confidence 57999999864 23445556667777778899999987554443
No 179
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=39.85 E-value=2.4e+02 Score=26.43 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=43.8
Q ss_pred HHHhccEE-EEcCCCCCC-cHHHHHHHHc---CCcEEEcC---CcCcccccccCcceEEEccccccccCCCCCCHHHHHH
Q 007873 473 IIAGADFI-LIPSRFEPC-GLIQLHAMRY---GTVPIVAS---TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVST 544 (586)
Q Consensus 473 ~l~~aDi~-l~PS~~E~~-gl~~lEAma~---G~PvI~s~---~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~ 544 (586)
+=.++|++ ++|. +.. |...+.++.. .+|++++- ..-+.+.+.-|..+.+.|+...+-+.+..+|-+++.+
T Consensus 144 ~~~Gad~vK~FPa--~~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs~l~~~~~i~~~~~~~i~~ 221 (232)
T 4e38_A 144 LEMGLTTLKFFPA--EASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVDKKLVTNGEWDEIAR 221 (232)
T ss_dssp HHTTCCEEEECST--TTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHH
T ss_pred HHcCCCEEEECcC--ccccCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeEEEECchhcChHHhhcCCHHHHHH
Confidence 33456654 4453 455 6778888864 45666542 1223445555666666666655555555667666666
Q ss_pred HHHHHHH
Q 007873 545 TVRRALA 551 (586)
Q Consensus 545 ~I~~ll~ 551 (586)
..+++++
T Consensus 222 ~a~~~~~ 228 (232)
T 4e38_A 222 LTREIVE 228 (232)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 180
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=39.79 E-value=27 Score=34.36 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=25.4
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++.+. +|++| ..|++.|.++||+|.+++..
T Consensus 13 ~M~ilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 13 HVKYAVLGA-------TGLLG---HHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEecC
Confidence 478877664 35555 45788888999999998765
No 181
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=39.67 E-value=1.4e+02 Score=23.60 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=64.6
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~ 505 (586)
.+++|+.+.+ .....++.+....+..+ ...-+..++...+. ..|++++=... +.-|+-+++.+. ..+|+|.
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~~~~v--~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 4 EKILIVDDQS-GIRILLNEVFNKEGYQT--FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEE--EEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHHHCCcEE--EEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEE
Confidence 3567777654 34455555554444333 22335555444443 46888875543 335666666664 4677765
Q ss_pred cC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 506 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 506 s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
-. ... ..+....|..+++. .|.++++|.+.|.+++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFA----------KPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEE----------SSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhcc----------CCCCHHHHHHHHHHHhc
Confidence 43 222 23344567889987 99999999999988764
No 182
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=39.66 E-value=1.8e+02 Score=27.02 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=64.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc--CCcEEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY--GTVPIV 505 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~--G~PvI~ 505 (586)
..+++|+.+.+. ....+..+....+..+ ...-+..++...+.. .|++++-... +.-|+.+++.+.. .+|+|+
T Consensus 37 ~~~ILivdd~~~-~~~~l~~~L~~~g~~v--~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~ 113 (249)
T 3q9s_A 37 EQRILVIEDDHD-IANVLRMDLTDAGYVV--DHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIV 113 (249)
T ss_dssp CCEEEEECSCHH-HHHHHHHHHHTTTCEE--EEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHH-HHHHHHHHHHHCCCEE--EEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEE
Confidence 456777766542 4445555444444222 222345544444433 5777765443 2346666666653 467765
Q ss_pred cCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 506 ASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 506 s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
-.... ..+.+..|..||+. .|.++++|.++|..++.
T Consensus 114 lt~~~~~~~~~~a~~~Ga~~yl~----------Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 114 LTARDTVEEKVRLLGLGADDYLI----------KPFHPDELLARVKVQLR 153 (249)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHCCCcEEEE----------CCCCHHHHHHHHHHHHh
Confidence 44322 23345568899998 99999999999999886
No 183
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=39.60 E-value=1.5e+02 Score=27.52 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=40.0
Q ss_pred HhccEEEEcCCC-C----CCcHHHHHHHH--cCCcEEEcC-Cc---CcccccccCcceEEEccccccccCCCCCCHHHHH
Q 007873 475 AGADFILIPSRF-E----PCGLIQLHAMR--YGTVPIVAS-TG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVS 543 (586)
Q Consensus 475 ~~aDi~l~PS~~-E----~~gl~~lEAma--~G~PvI~s~-~g---g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la 543 (586)
.+++.+++++.. + +..+..++.+. .++|+|++- +. -+.++...|..|+++|+-.+. .+.++.++.
T Consensus 164 ~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~----~~~~~~~~~ 239 (252)
T 1ka9_F 164 LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF----GEIPIPKLK 239 (252)
T ss_dssp HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT----TSSCHHHHH
T ss_pred cCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc----CCCCHHHHH
Confidence 358877766532 2 33466666554 489999874 12 123345557889999854443 445666655
Q ss_pred HHH
Q 007873 544 TTV 546 (586)
Q Consensus 544 ~~I 546 (586)
+.+
T Consensus 240 ~~l 242 (252)
T 1ka9_F 240 RYL 242 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 184
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=39.00 E-value=2.1e+02 Score=25.42 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=67.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEe-ccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc---CCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVA-KFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~-~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~---G~Pv 503 (586)
..+++|+.+.+ .....+..+....++ ..... .-+..++...+. ..|++++=... +.-|+.+++.+.. .+|+
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 82 (215)
T 1a04_A 5 PATILLIDDHP-MLRTGVKQLISMAPD-ITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRI 82 (215)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEE
T ss_pred ceEEEEECCCH-HHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 45677777654 244555555544332 32212 235555544444 35888875543 4467777777753 5676
Q ss_pred EEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.... ..+.+..|..|++. .|.++++|.++|..++..
T Consensus 83 i~ls~~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 83 VVFSVSNHEEDVVTALKRGADGYLL----------KDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp EEEECCCCHHHHHHHHHTTCSEEEE----------TTCCHHHHHHHHHHHHHS
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEe----------CCCCHHHHHHHHHHHHcC
Confidence 5543222 23345568899998 999999999999998864
No 185
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=38.99 E-value=1.6e+02 Score=23.97 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=67.0
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCC--ceEEEeccChHHHHHHHHh--------ccEEEEcCCC-CCCcHHHHHHHH-
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPE--KARGVAKFNIPLAHMIIAG--------ADFILIPSRF-EPCGLIQLHAMR- 498 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~--~v~~~~~~~~~~~~~~l~~--------aDi~l~PS~~-E~~gl~~lEAma- 498 (586)
..+++|+.+.+. ....+.++..+.+. .+. ..-+..++...+.. .|++++-... +.-|+.+++.+.
T Consensus 7 ~~~ILivdd~~~-~~~~l~~~L~~~g~~~~v~--~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDEV-DIQSVERVFHKISSLIKIE--IAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCHH-HHHHHHHHHHHHCTTCCEE--EESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCeEEEEeCCHH-HHHHHHHHHHHhCCCceEE--EECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 456777776553 44455555444443 232 23355555556653 6888876543 345777787775
Q ss_pred ----cCCcEEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 499 ----YGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 499 ----~G~PvI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
..+|+|+..... ..+....|..+++. .|-++++|.+++.....
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLI----------KPLDYGEAIKLFWILQS 134 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEE----------SSCCHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEE----------CCCCHHHHHHHHHHHHH
Confidence 467776543222 34455678889998 99999999998776544
No 186
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=38.69 E-value=1.4e+02 Score=23.35 Aligned_cols=107 Identities=11% Similarity=0.166 Sum_probs=64.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH---cCCcEEEc
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPIVA 506 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~s 506 (586)
+++|+.+.+ .....+.+.....+..+ ...-+..++...+.. .|++++=... +.-|+.+++.+. ..+|+|..
T Consensus 2 ~ilivdd~~-~~~~~l~~~l~~~g~~v--~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 2 RVLVVEDNA-LLRHHLKVQIQDAGHQV--DDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEE--EEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred eEEEEeCcH-HHHHHHHHHHhhcCCEE--EEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 456666544 24445555555544333 223345555455543 5888775443 345777777775 35677654
Q ss_pred C-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
. ... ..+.+..|..+++. .|-++++|...|.+++..
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVT----------KPFHIEEVMARMQALMRR 118 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEE----------CCCCHHHHHHHHHHHHHh
Confidence 3 222 23445678889998 999999999999988753
No 187
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=38.23 E-value=2.5e+02 Score=26.08 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=64.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
+.+++|+.+.+. ....+.++..+.+..+ ...-+..++...+.. .|++++=... +.-|+.+++.+. ..+|+|
T Consensus 129 ~~~ILivdd~~~-~~~~l~~~L~~~g~~v--~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 129 DMMILVVDDHPI-NRRLLADQLGSLGYQC--KTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCEEEEEESSHH-HHHHHHHHHHHHTSEE--EEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCEEEEEeCCHH-HHHHHHHHHHHcCCEE--EEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 456777776542 3334444443444223 223355555555543 4777754332 345666666553 478887
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+-.... ..+.+..|..+++. .|-+.++|.+.|.+++..
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~----------KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLS----------KPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEE----------CCCCHHHHHHHHHHHHHH
Confidence 654322 23345568889998 999999999999998865
No 188
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=38.23 E-value=31 Score=31.15 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=30.9
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|... .|.....+..+++.+.+.|++|.++-..
T Consensus 4 mmkilii~~S------~g~T~~la~~i~~~l~~~g~~v~~~~l~ 41 (199)
T 2zki_A 4 KPNILVLFYG------YGSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199)
T ss_dssp CCEEEEEECC------SSHHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CcEEEEEEeC------ccHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 4899999754 4677888888999999899999998654
No 189
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=37.66 E-value=1.6e+02 Score=23.70 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=66.6
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~ 505 (586)
.+++|+.+.+. ....++.+....+..+. ..-+..++...+. ..|++++-... +.-|+.+++.+. .++|+|.
T Consensus 4 ~~Ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 4 KRILIVDDDTA-ILDSTKQILEFEGYEVE--IAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEEeCCHH-HHHHHHHHHHHCCceEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 45677776542 44555555545443332 3335555545544 35888875443 345676776664 3677765
Q ss_pred cC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 506 AS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 506 s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-. ... ..+.+..|..|++. .|.++++|.+.|.+++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIM----------KPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhcc----------CCCCHHHHHHHHHHHHhc
Confidence 43 222 33455678899998 999999999999998864
No 190
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=37.66 E-value=25 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=28.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+.|+..- + .-|-.+...+|+.+|+++|++|.++=..
T Consensus 2 ~~vi~v~s~k-g---GvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 2 ARIIVVTSGK-G---GVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp CEEEEEECSS-T---TSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCC-C---CCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4666666431 1 2355668899999999999999999654
No 191
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=37.52 E-value=21 Score=33.35 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=19.7
Q ss_pred cchHHHHhhhhHHHHHhCC-CeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~G-h~V~vvt~~ 127 (586)
+||+| ..+++.|.++| |+|.++..+
T Consensus 32 tG~iG---~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 32 GGQIA---RHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp TSHHH---HHHHHHHTTCTTEEEEEEESS
T ss_pred CcHHH---HHHHHHHHhCCCceEEEEEcC
Confidence 46666 45788999999 899998765
No 192
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=37.31 E-value=27 Score=33.28 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.6
Q ss_pred ceEEEEeccccCccccch--HHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGG--LGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG--~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+.|+.. .|| -.+...+|+.+|+++|++|.++=..
T Consensus 18 ~~vI~v~s~------kGGvGKTT~a~nLA~~la~~G~~VlliD~D 56 (262)
T 2ph1_A 18 KSRIAVMSG------KGGVGKSTVTALLAVHYARQGKKVGILDAD 56 (262)
T ss_dssp SCEEEEECS------SSCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 566666543 344 4568889999999999999998654
No 193
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=37.26 E-value=13 Score=39.16 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=79.1
Q ss_pred EEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCCh------------------hhHHHHHHHHHHCCCceEEEecc
Q 007873 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK------------------PMEKQLEQLEILYPEKARGVAKF 465 (586)
Q Consensus 404 ~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~------------------~~~~~l~~l~~~~~~~v~~~~~~ 465 (586)
.+.++|. .+.++.+.+.+....++-=+++|+|.|.- ...+..++++.++++-+...+--
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~ 287 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDA 287 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEESCT
T ss_pred EEEEEec---cchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEeccc
Confidence 4555553 45666666666654434446777787641 13456777777777655555554
Q ss_pred Ch-HHHH-HHHHhccEEEEcCCC-CCCcHHHHHHHHcCCcEEEcC--CcCcccccccCcceEEEccccccccCCCCCCH-
Q 007873 466 NI-PLAH-MIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAS--TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDV- 539 (586)
Q Consensus 466 ~~-~~~~-~~l~~aDi~l~PS~~-E~~gl~~lEAma~G~PvI~s~--~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~- 539 (586)
.. +.+. +=+..||+++..... |.-=++.+-|-.+|++-+.+. .....+++....-...+ +|
T Consensus 288 td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~vi-------------sp~ 354 (461)
T 4g65_A 288 ADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAI-------------SPQ 354 (461)
T ss_dssp TCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEE-------------CHH
T ss_pred cchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceee-------------CHH
Confidence 33 3332 256889999877654 544556667888998877774 34566666554333443 33
Q ss_pred HHHHHHHHHHHHh
Q 007873 540 AAVSTTVRRALAT 552 (586)
Q Consensus 540 ~~la~~I~~ll~~ 552 (586)
...+..|.+.+..
T Consensus 355 ~~~a~~I~~~i~~ 367 (461)
T 4g65_A 355 QATISALLTHVRR 367 (461)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 3355666666543
No 194
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=37.15 E-value=23 Score=34.83 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCC--CeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G--h~V~vvt~~ 127 (586)
|+.|||++.+. +|++| ..+++.|.++| |+|.++...
T Consensus 1 M~~m~vlVTGa-------tG~iG---~~l~~~L~~~g~~~~V~~~~r~ 38 (336)
T 2hun_A 1 MHSMKLLVTGG-------MGFIG---SNFIRYILEKHPDWEVINIDKL 38 (336)
T ss_dssp --CCEEEEETT-------TSHHH---HHHHHHHHHHCTTCEEEEEECC
T ss_pred CCCCeEEEECC-------CchHH---HHHHHHHHHhCCCCEEEEEecC
Confidence 45688776654 36655 44778888886 888887643
No 195
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=37.13 E-value=1.6e+02 Score=23.61 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=65.6
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~ 505 (586)
.+++|+.+... ....+..+....+..+. ..-+..++...+. ..|++++-... +.-|+.+++.+. ..+|+|.
T Consensus 4 ~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 4 KKILVVDDEES-IVTLLQYNLERSGYDVI--TASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEEEECCHH-HHHHHHHHHHHCCcEEE--EecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 45677776542 44455555445443332 2234444444443 35888775543 345677777664 3567755
Q ss_pred c-CCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 506 A-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 506 s-~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
- ..+. ..+.+..|..+++. .|.++++|...|..++..
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMT----------KPFSPREVNARVKAILRR 121 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHhCCCCEEEE----------CCCCHHHHHHHHHHHHHh
Confidence 4 3222 23345678889998 999999999999998875
No 196
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=36.89 E-value=28 Score=34.37 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=24.9
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.++.|+|++++. +|++| ..|++.|.++||+|.++...
T Consensus 24 ~~~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 24 EKDRKRILITGG-------AGFVG---SHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp ---CCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred ccCCCEEEEEcC-------ccHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 345677776654 35555 45788888999999998754
No 197
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=36.86 E-value=26 Score=34.85 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=25.8
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|||++|+. |.+|. .++..|++.||+|+++...
T Consensus 1 M~~mkI~IiGa--------G~~G~---~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 1 MSLTRICIVGA--------GAVGG---YLGARLALAGEAINVLARG 35 (335)
T ss_dssp -CCCCEEEESC--------CHHHH---HHHHHHHHTTCCEEEECCH
T ss_pred CCCCEEEEECc--------CHHHH---HHHHHHHHCCCEEEEEECh
Confidence 45699999984 44443 2678888999999999753
No 198
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=36.61 E-value=1.7e+02 Score=26.15 Aligned_cols=103 Identities=13% Similarity=0.194 Sum_probs=63.2
Q ss_pred EEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCCCCCcHHHHHHHHc---CCcEEEcCC
Q 007873 434 IIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRFEPCGLIQLHAMRY---GTVPIVAST 508 (586)
Q Consensus 434 lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~E~~gl~~lEAma~---G~PvI~s~~ 508 (586)
++|+.+.+ .....+..+....+..+. ..-+..++...+.. .|++++| +.-|+-+++.+.. .+|+|.-..
T Consensus 3 ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~ 76 (223)
T 2hqr_A 3 VLLIEKNS-VLGGEIEKGLNVKGFMAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSD 76 (223)
T ss_dssp EEEECSCH-HHHHHHHHHHGGGTCCEE--EESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEES
T ss_pred EEEEcCCH-HHHHHHHHHHHHCCcEEE--EECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEEC
Confidence 45555543 344555555444443343 33355555555543 5888843 3456766666643 677765543
Q ss_pred cC----cccccccCcceEEEccccccccCCCCC-CHHHHHHHHHHHHHh
Q 007873 509 GG----LVDTVEEGFTGFQMGSFSVDCEAVDPV-DVAAVSTTVRRALAT 552 (586)
Q Consensus 509 gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~-d~~~la~~I~~ll~~ 552 (586)
.. ..+.+..|..|++. .|. ++++|.++|..++..
T Consensus 77 ~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 77 NPTSEEEVHAFEQGADDYIA----------KPYRSIKALVARIEARLRF 115 (223)
T ss_dssp SCCHHHHHHHHHHTCSEEEE----------TTCSCTHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHcCCCEEEE----------CCCCCHHHHHHHHHHHhcc
Confidence 22 23345568899998 999 999999999998864
No 199
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=36.48 E-value=27 Score=34.60 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++.|+|++++. +|++| ..|++.|.++||+|.++...
T Consensus 23 ~~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 23 FSPKTWLITGV-------AGFIG---SNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp HSCCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCCCeEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 45678877664 35555 45888899999999999865
No 200
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=36.33 E-value=32 Score=31.95 Aligned_cols=37 Identities=24% Similarity=0.125 Sum_probs=28.6
Q ss_pred CCceEEEEeccccCccccchHHHH--hhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~--~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+++||++.- +||.+.+ ..+|.+.|.+.|++|.++...
T Consensus 4 ~~k~Illgi--------TGsiaayk~~~~ll~~L~~~g~eV~vv~T~ 42 (207)
T 3mcu_A 4 KGKRIGFGF--------TGSHCTYEEVMPHLEKLIAEGAEVRPVVSY 42 (207)
T ss_dssp TTCEEEEEE--------CSCGGGGTTSHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEE--------EChHHHHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 456777655 3555656 678999999999999999765
No 201
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=36.08 E-value=49 Score=31.20 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=23.2
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhC--CCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~--Gh~V~vvt~~ 127 (586)
.|||+|+.+- + +..+..+.++|.+. +++|..|...
T Consensus 22 ~~rI~~l~SG------~---g~~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 22 MIRIGVLISG------S---GTNLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp CEEEEEEESS------C---CHHHHHHHHHHHTTSSSEEEEEEEES
T ss_pred CcEEEEEEeC------C---cHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 4799999742 1 23566677888766 6787666544
No 202
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=35.95 E-value=22 Score=35.19 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=22.5
Q ss_pred CceeeecCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 75 PSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 75 ~~~~~~~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
..+....++.|||++++. +|++| ..|++.|.++|+++.|+..
T Consensus 15 ~~n~~~~~~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 15 TENLYFQSNAMNILVTGG-------AGFIG---SNFVHYMLQSYETYKIINF 56 (346)
T ss_dssp ---------CEEEEEETT-------TSHHH---HHHHHHHHHHCTTEEEEEE
T ss_pred ccccccccCCCeEEEECC-------ccHHH---HHHHHHHHhhCCCcEEEEE
Confidence 334444566788876654 35555 4588899999966655543
No 203
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=35.92 E-value=40 Score=30.21 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=31.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHh-CCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~-~Gh~V~vvt~~ 127 (586)
|||++|... | +|.....+..+++.+.+ .|++|.++-..
T Consensus 2 mkilii~~S--~---~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYS--M---YGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeC--C---CcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 699998764 4 57788888889999998 89999998654
No 204
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=35.87 E-value=1.8e+02 Score=23.79 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=60.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHH--CCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 433 QIIVLGTGKKPMEKQLEQLEIL--YPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~--~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
+++|+.+.+. ....+..+... .+..+.. ..-+...+...+. ..|++++-... +.-|+-+++.+. ..+|+|
T Consensus 4 ~ILivdd~~~-~~~~l~~~L~~~~~~~~~~~-~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii 81 (141)
T 3cu5_A 4 RILIVDDEKL-TRDGLIANINWKALSFDQID-QADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVI 81 (141)
T ss_dssp EEEEECSCHH-HHHHHHHHCCGGGSCCSEEE-EESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEE
T ss_pred eEEEEeCCHH-HHHHHHHHHHHccCCcEEee-ecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Confidence 5667776542 33334433321 2222221 2224444444444 35888875543 345777777664 467776
Q ss_pred EcCCc----CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~g----g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-... ...+.+..|..+++. .|.++++|.+.|.+++..
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 82 FMSGYSDKEYLKAAIKFRAIRYVE----------KPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp EECCSTTTCCC------CCCEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHhCCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 54322 234455678889987 999999999999998865
No 205
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=35.78 E-value=19 Score=35.05 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=24.0
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|+.|||++++. +|++| ..|++.|.++||+|.++..
T Consensus 1 M~~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~v~~~~r 35 (321)
T 1e6u_A 1 MAKQRVFIAGH-------RGMVG---SAIRRQLEQRGDVELVLRT 35 (321)
T ss_dssp -CCEEEEEETT-------TSHHH---HHHHHHHTTCTTEEEECCC
T ss_pred CCCCEEEEECC-------CcHHH---HHHHHHHHhCCCeEEEEec
Confidence 44688876654 35555 4578889999999887653
No 206
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=35.77 E-value=47 Score=31.74 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.+.||.+||+..- + .-|-..+...|+++|+++|++|..+=|
T Consensus 23 ~~~m~~i~Itgt~-t---~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 23 QSHMTILVVTGTG-T---GVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp CSSCEEEEEEESS-T---TSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCEEEEEeCC-C---CCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3568999998752 2 457778899999999999999999865
No 207
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=35.31 E-value=1.7e+02 Score=23.48 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=65.9
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc-ChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
.+++|+.+.+ .....+..+....++ ....... +..++...+. ..|++++=... +.-|+-+++.+. ..+|+|
T Consensus 4 ~~Ilivdd~~-~~~~~l~~~l~~~~~-~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQN-MLRQAMVQLIKLHGD-FEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCH-HHHHHHHHHHHHHSS-EEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCH-HHHHHHHHHHhhCCC-cEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 4566666554 344555555444332 2222222 4455544443 36888876554 345677777775 357776
Q ss_pred EcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-. ... ..+.+..|..|++. .|.++++|.+.|.+++..
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVL----------KERSIEELVETINKVNNG 123 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE----------TTSCHHHHHHHHHHHHC-
T ss_pred EEecCCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHcC
Confidence 543 222 34455678899998 999999999999998764
No 208
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=35.10 E-value=29 Score=32.07 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=28.8
Q ss_pred CCCceEEEEeccccCccccchHHHH--hhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~--~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.+++||++-- +|+.+.+ ..+|.+.|.+.|++|.++...
T Consensus 5 l~~k~I~lgi--------TGs~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 5 FAGKHVGFGL--------TGSHCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp CTTCEEEEEC--------CSCGGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred cCCCEEEEEE--------EChHHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 3456777654 3555555 888999999999999999765
No 209
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=34.87 E-value=32 Score=34.20 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=24.5
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|||++|+. |.+|. .++..|++.||+|.++...
T Consensus 2 m~~mki~iiG~--------G~~G~---~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 2 IESKTYAVLGL--------GNGGH---AFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp --CCEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECSC
T ss_pred CCcCeEEEECC--------CHHHH---HHHHHHHhCCCEEEEEeCC
Confidence 44689999983 44443 3677888999999988643
No 210
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=34.85 E-value=1e+02 Score=29.28 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=44.7
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHCCC-ceEEEeccChHHHHHHHH-hccEEEEcCCCCCCcHHHHHHHHcCCcEEEcCCc
Q 007873 433 QIIVLGT-GKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG 509 (586)
Q Consensus 433 ~lvIvG~-g~~~~~~~l~~l~~~~~~-~v~~~~~~~~~~~~~~l~-~aDi~l~PS~~E~~gl~~lEAma~G~PvI~s~~g 509 (586)
++.|+|. |. +-+.+.+...+.++ .+........ .+..++. .+|++|--+..+..--.+..+...|+|+|+..+|
T Consensus 2 kV~V~Ga~G~--mG~~i~~~~~~~~~~elva~~d~~~-dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGK--VGTTMVRAVAAADDLTLSAELDAGD-PLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSH--HHHHHHHHHHHCTTCEEEEEECTTC-CTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCH--HHHHHHHHHHhCCCCEEEEEEccCC-CHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 6788884 76 54555555444432 3433332222 2223444 7899985555454433455668899999998776
Q ss_pred Cccc
Q 007873 510 GLVD 513 (586)
Q Consensus 510 g~~e 513 (586)
...|
T Consensus 79 ~~~e 82 (245)
T 1p9l_A 79 FTAE 82 (245)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 5444
No 211
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=34.78 E-value=1.5e+02 Score=27.98 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=25.2
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|++.- +-.....+...++.++.-|.+|..+++.
T Consensus 1 ~mrilvINPnt-----s~~~T~~i~~~~~~~~~p~~~i~~~t~~ 39 (245)
T 3qvl_A 1 SVRIQVINPNT-----SLAMTETIGAAARAVAAPGTEILAVCPR 39 (245)
T ss_dssp CEEEEEECSSC-----CHHHHHHHHHHHHHHCCTTEEEEEECCS
T ss_pred CCEEEEEeCCC-----CHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 38999999642 3445555566666666556677766654
No 212
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.56 E-value=31 Score=34.23 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=29.0
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
++|+++.+... -+ .-|-.+...+||.+|+++|++|.++....
T Consensus 11 ~gm~~i~v~sg-KG---GvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 11 KGKTTFVFIGG-KG---GVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp TTBCEEEEEEE-ST---TSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCeEEEEEeC-CC---CchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 35555544432 11 23455678889999999999999998763
No 213
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=34.20 E-value=1.7e+02 Score=22.97 Aligned_cols=108 Identities=11% Similarity=0.173 Sum_probs=64.7
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH--cCCcEEEc
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 506 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma--~G~PvI~s 506 (586)
.+++|+.+.+ .....++......+..+ ...-+...+...+.. .|++++-... +.-|+.+++.+. ..+|+|..
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~~~~v--~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 4 PHILIVEDEL-VTRNTLKSIFEAEGYDV--FEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHTTTCEE--EEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHhhCCcEE--EEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 3566777654 24445555544444322 222344555444443 5888775543 335666666664 46777654
Q ss_pred C-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
. ... ..+.++.|..+++. .|.++++|...|.+++..
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYIT----------KPFNPRELTIRARNLLSR 120 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEe----------CCCCHHHHHHHHHHHHHH
Confidence 3 222 23345668889998 999999999999888753
No 214
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=34.19 E-value=28 Score=32.26 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=26.2
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCC--eEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh--~V~vvt~~ 127 (586)
|++|+|++.+. +||+|. .+++.|.++|| +|.++..+
T Consensus 16 m~~~~vlVtGa-------sg~iG~---~l~~~L~~~G~~~~V~~~~r~ 53 (242)
T 2bka_A 16 MQNKSVFILGA-------SGETGR---VLLKEILEQGLFSKVTLIGRR 53 (242)
T ss_dssp HTCCEEEEECT-------TSHHHH---HHHHHHHHHTCCSEEEEEESS
T ss_pred hcCCeEEEECC-------CcHHHH---HHHHHHHcCCCCCEEEEEEcC
Confidence 44577776654 466664 47888999999 99998755
No 215
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=34.16 E-value=30 Score=34.30 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 7 ~~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 42 (357)
T 1rkx_A 7 WQGKRVFVTGH-------TGFKG---GWLSLWLQTMGATVKGYSLT 42 (357)
T ss_dssp HTTCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred hCCCEEEEECC-------CchHH---HHHHHHHHhCCCeEEEEeCC
Confidence 45678776654 35655 44788899999999998754
No 216
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=34.06 E-value=28 Score=34.40 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=24.0
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 17 ~~~~~vlVtGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 17 RGSHMILVTGS-------AGRVG---RAVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp ----CEEEETT-------TSHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred cCCCEEEEECC-------CChHH---HHHHHHHHhCCCEEEEEeCC
Confidence 34678877664 35555 45788999999999998754
No 217
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=34.01 E-value=1.6e+02 Score=29.73 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=89.9
Q ss_pred CcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh-ccEE
Q 007873 402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG-ADFI 480 (586)
Q Consensus 402 ~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~-aDi~ 480 (586)
.|+.+..=.-..-..++..++-+.+|.+....+|=++-...+..+.+.++.++.+--+..-.+|+...+...+.. +|.+
T Consensus 30 ~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dkl 109 (366)
T 3noy_A 30 APIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGI 109 (366)
T ss_dssp SCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEE
T ss_pred CcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeE
Confidence 344444434556688999999999997777777767766655567777887777655666778998877665544 7875
Q ss_pred -EEcCCC---CCCcHHHHHHHHcCCcE-EEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 481 -LIPSRF---EPCGLIQLHAMRYGTVP-IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 481 -l~PS~~---E~~gl~~lEAma~G~Pv-I~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
+.|... +.+.-++-.|-.+|+|+ |..+.|.+..-+.+.. -+.+++++.+...+.+
T Consensus 110 RINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~y---------------g~~~~eamVeSAl~~~ 169 (366)
T 3noy_A 110 RINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKY---------------GYPSAEALAESALRWS 169 (366)
T ss_dssp EECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHH---------------SSCCHHHHHHHHHHHH
T ss_pred EECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhc---------------CCCCHHHHHHHHHHHH
Confidence 666653 23445677888999999 6667777766444321 2346777766544443
No 218
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=33.90 E-value=31 Score=32.11 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=19.0
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++||+|.++...
T Consensus 10 sg~iG---~~l~~~L~~~g~~V~~~~r~ 34 (255)
T 2dkn_A 10 ASGIG---AALKELLARAGHTVIGIDRG 34 (255)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 45655 45788899999999988654
No 219
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=33.57 E-value=25 Score=36.85 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=31.6
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhC--CCeEEEEEecC
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPRY 128 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~--Gh~V~vvt~~~ 128 (586)
+++|+++.. | ..|--.-+.+|++.|+++ ||+|+++++..
T Consensus 9 ~~~vv~~p~---p---~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 9 NSELIFIPA---P---GIGHLASALEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp CEEEEEECC---S---STTTHHHHHHHHHHHHHTCTTEEEEEEECCC
T ss_pred CCEEEEEcC---c---ccchHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 578888863 4 456666888999999999 99999998763
No 220
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=33.51 E-value=30 Score=33.47 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=23.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++.+. +|++| ..|++.|.++||+|.++...
T Consensus 1 m~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 33 (312)
T 3ko8_A 1 MRIVVTGG-------AGFIG---SHLVDKLVELGYEVVVVDNL 33 (312)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred CEEEEECC-------CChHH---HHHHHHHHhCCCEEEEEeCC
Confidence 67666553 35555 45888999999999998654
No 221
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=33.33 E-value=36 Score=33.97 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=26.1
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEecC
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPRY 128 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~~ 128 (586)
.|+.|||++++. +|.+| ..|+++|.++ ||+|.++....
T Consensus 21 ~m~~~~vlVtGa-------tG~iG---~~l~~~L~~~~g~~V~~~~r~~ 59 (372)
T 3slg_A 21 SMKAKKVLILGV-------NGFIG---HHLSKRILETTDWEVFGMDMQT 59 (372)
T ss_dssp --CCCEEEEESC-------SSHHH---HHHHHHHHHHSSCEEEEEESCC
T ss_pred ccCCCEEEEECC-------CChHH---HHHHHHHHhCCCCEEEEEeCCh
Confidence 355678877664 35555 4578888888 99999998653
No 222
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=33.07 E-value=2.8e+02 Score=25.14 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=66.7
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc--CCcEEEc
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVPIVA 506 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~--G~PvI~s 506 (586)
.+++|+.+.+. ....+..+....+..+. ..-+..++...+. ..|++++-... +.-|+.+++.+.. .+|+|.-
T Consensus 6 ~~ILivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 6 QRILVVDDDAS-LAEMLTIVLRGEGFDTA--VIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CEEEEECSCHH-HHHHHHHHHHHTTCEEE--EECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEeCCHH-HHHHHHHHHHHCCCEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 46777776542 44455555444443332 2234444444443 35888775543 4467777777753 6787654
Q ss_pred CC-cC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 ST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~~-gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.. .. ..+.+..|..|++. .|.++++|.++|..++..
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIM----------KPFKPKELVARVRARLRR 122 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHCCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 32 22 33455678899998 999999999999988753
No 223
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=33.07 E-value=33 Score=32.19 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=24.4
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 mk~vlVTGa------s~gIG---~~~a~~l~~~G~~V~~~~r~ 34 (257)
T 1fjh_A 1 MSIIVISGC------ATGIG---AATRKVLEAAGHQIVGIDIR 34 (257)
T ss_dssp CCEEEEETT------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCC------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 666666632 46665 45888999999999888654
No 224
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=33.03 E-value=43 Score=30.31 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHH-HHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPA-LAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~-L~~~Gh~V~vvt~~ 127 (586)
|||++|... |. +.|-....+..+++. |.+.|++|.++-..
T Consensus 3 mkilii~gS--~r-~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 3 YSIVAISGS--PS-RNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp EEEEEEECC--SS-TTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred ceEEEEECC--CC-CCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 799999865 42 345566677778888 88899999988643
No 225
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=32.85 E-value=1.2e+02 Score=24.59 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=65.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-C--CCcHHHHHHHHc---CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-E--PCGLIQLHAMRY---GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E--~~gl~~lEAma~---G~P 502 (586)
..+++|+.+... ....++++..+.+..+. ..-+..++...+. ..|++++-... + .-|+.+++.+.. .+|
T Consensus 6 ~~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 6 HPIIYLVDHQKD-ARAALSKLLSPLDVTIQ--CFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp -CEEEEECSCHH-HHHHHHHHHTTSSSEEE--EESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcCCHH-HHHHHHHHHHHCCcEEE--EeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 346777766542 44455555544443232 2224444433333 34777765443 4 456677766653 677
Q ss_pred EEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|.-.... ..+.+..|..+++. .|-++++|.++|.+++..
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIE----------KPFIEHVLVHDVQQIING 126 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEE----------SSBCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcChHHhee----------CCCCHHHHHHHHHHHHhc
Confidence 76543322 33455678899998 999999999999999876
No 226
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=32.78 E-value=1.8e+02 Score=25.39 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=61.6
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCC-cHHHHHHHH---cCCcEEEc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC-GLIQLHAMR---YGTVPIVA 506 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~-gl~~lEAma---~G~PvI~s 506 (586)
..+++|+.+.+. ....+..+....+..+... .+.... +-...|++++-....+. |+ +.+.+. ..+|+|.-
T Consensus 12 ~~~iLivdd~~~-~~~~l~~~L~~~g~~v~~~--~~~~~a--l~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~l 85 (196)
T 1qo0_D 12 ELQVLVLNPPGE-VSDALVLQLIRIGCSVRQC--WPPPEA--FDVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVAL 85 (196)
T ss_dssp GCEEEEESCTTH-HHHHHHHHHHHHTCEEEEE--CSCCSS--CSSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEcCChh-HHHHHHHHHHHcCCeEEEe--cCchhh--CCCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEE
Confidence 467888887663 3334444433434334322 222111 11256888775554332 55 555554 46777654
Q ss_pred C-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
. .+. ..+.+..|..+++. .|-++++|...|..++..
T Consensus 86 t~~~~~~~~~~a~~~ga~~~l~----------KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 86 VEYESPAVLSQIIELECHGVIT----------QPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEE----------SSCCGGGHHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHcCCCeeEe----------cCcCHHHHHHHHHHHHHH
Confidence 3 222 23345568899998 999999999999988764
No 227
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=32.52 E-value=1.8e+02 Score=22.75 Aligned_cols=107 Identities=7% Similarity=0.067 Sum_probs=66.3
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC--CCCcHHHHHHHH-----cCCc
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF--EPCGLIQLHAMR-----YGTV 502 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~--E~~gl~~lEAma-----~G~P 502 (586)
.+++|+.+.+. ..+.+.+...+.+..+. ..-+..++...+. ..|++++-... +.-|..+++.+. ..+|
T Consensus 6 ~~ilivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 6 KKILIVESDTA-LSATLRSALEGRGFTVD--ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp CEEEEECSCHH-HHHHHHHHHHHHTCEEE--EECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred CeEEEEeCCHH-HHHHHHHHHHhcCceEE--EecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCC
Confidence 46777776542 44445554444443332 3334555544443 35888775443 345777777775 4688
Q ss_pred EEEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|.. ... ..+....|..+++. .|-++++|.+.|.+++..
T Consensus 83 ii~~-~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 83 IVII-GNPDGFAQHRKLKAHADEYVA----------KPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEEE-ECGGGHHHHHHSTTCCSEEEE----------SSCCHHHHHHHHHHHHCC
T ss_pred EEEE-ecCCchhHHHHHHhCcchhee----------CCCCHHHHHHHHHHHHcC
Confidence 8776 322 23345668889987 999999999999988754
No 228
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=32.47 E-value=49 Score=31.55 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=29.1
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
..|||++|... |. +.|-....+..+++.+.+.|++|.++-.
T Consensus 33 ~~mkIliI~GS--~r-~~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 33 HRPRILILYGS--LR-TVSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp SCCEEEEEECC--CC-SSCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCeEEEEEcc--CC-CCCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 46899999975 53 2333445556678888888999998854
No 229
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=32.23 E-value=40 Score=32.94 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+++|+|++.+. +|++| ..|++.|.++||+|.++...
T Consensus 9 ~~~~~vlVTGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 44 (342)
T 1y1p_A 9 PEGSLVLVTGA-------NGFVA---SHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp CTTCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECC-------ccHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 34677776654 36665 45788899999999988653
No 230
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=32.01 E-value=39 Score=33.50 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=25.7
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
.|||.||+ .||.| +..+|+.|.++||+|.+.=
T Consensus 4 ~~~i~~iG--------iGg~G--ms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 4 MKHIHIIG--------IGGTF--MGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CCEEEEES--------CCSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEE--------ECHHH--HHHHHHHHHhCCCEEEEEc
Confidence 46898888 47777 5568899999999999874
No 231
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=31.76 E-value=51 Score=31.72 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++||++.|+..- | .-|-.....+||..|++.|.+|.+|=..
T Consensus 80 ~~~kvI~vts~k-g---G~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 80 SAVQSIVITSEA-P---GAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCCEEEEECSS-T---TSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCC-C---CCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 468888887641 2 3466678899999999999999999654
No 232
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=31.41 E-value=88 Score=29.25 Aligned_cols=91 Identities=10% Similarity=0.056 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcccCCeEEEEEeCCC-----hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCC----
Q 007873 417 SDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFE---- 487 (586)
Q Consensus 417 ~d~Ll~A~~~l~~~~v~lvIvG~g~-----~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E---- 487 (586)
++.+.+++..+.+.+-+++|+..+. +.+...+.+.-++++..+...-.++ ...+.+..||.+++|- -+
T Consensus 17 l~~~~~~l~~~~~~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~--d~~~~l~~ad~I~lpG-G~~~~~ 93 (229)
T 1fy2_A 17 LEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVA--DPLAAIEKAEIIIVGG-GNTFQL 93 (229)
T ss_dssp TTTTHHHHHHHHTTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSS--CHHHHHHHCSEEEECC-SCHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccc--cHHHHHhcCCEEEECC-CcHHHH
Confidence 4445666666655567888887753 2344445555555553332221112 2336788999999996 22
Q ss_pred -------CCcHHHHHHHHcCCcEEEcCCcC
Q 007873 488 -------PCGLIQLHAMRYGTVPIVASTGG 510 (586)
Q Consensus 488 -------~~gl~~lEAma~G~PvI~s~~gg 510 (586)
++--.+-|+...|+|++.+..|-
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 94 LKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 23335677778999999988664
No 233
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=31.41 E-value=47 Score=30.77 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=25.3
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+++|+|++.+. .||+| ..+++.|+++|++|.++...
T Consensus 5 ~~~~~vlVTGa-------sggiG---~~~a~~l~~~G~~V~~~~r~ 40 (244)
T 1cyd_A 5 FSGLRALVTGA-------GKGIG---RDTVKALHASGAKVVAVTRT 40 (244)
T ss_dssp CTTCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeCC-------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 34566665553 46666 45889999999999888654
No 234
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=31.32 E-value=1e+02 Score=25.75 Aligned_cols=109 Identities=9% Similarity=0.018 Sum_probs=65.9
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhc--cEEEEcCCC-CCCcHHHHHHHH-cCCcEEE
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA--DFILIPSRF-EPCGLIQLHAMR-YGTVPIV 505 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a--Di~l~PS~~-E~~gl~~lEAma-~G~PvI~ 505 (586)
...+++|+-+.+. ....++++-.+.+..+.. ..-+++++.+++... |++++=-.. +.-|+-+++.+. .++|+|.
T Consensus 7 r~~rILiVdD~~~-~~~~l~~~L~~~G~~v~~-~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~ 84 (123)
T 2lpm_A 7 RRLRVLVVEDESM-IAMLIEDTLCELGHEVAA-TASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIF 84 (123)
T ss_dssp CCCCEEEESSSTT-TSHHHHHHHHHHCCCCCB-CSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCC
T ss_pred CCCEEEEEeCCHH-HHHHHHHHHHHCCCEEEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEE
Confidence 4567788877552 334444444444432311 123667766666554 777765443 456777777774 5788865
Q ss_pred cC-CcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 506 AS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 506 s~-~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
-. .+......+-+..||+. .|-++++|.++|.+++
T Consensus 85 lTa~~~~~~~~~~g~~~yl~----------KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 85 ATGYGSKGLDTRYSNIPLLT----------KPFLDSELEAVLVQIS 120 (123)
T ss_dssp BCTTCTTSCCSSSCSCSCBC----------SSSSHHHHHHHHSTTC
T ss_pred EecCccHHHHHhCCCCcEEE----------CCCCHHHHHHHHHHHH
Confidence 43 23222233346677776 9999999999887664
No 235
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=31.22 E-value=2.7e+02 Score=24.41 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=67.3
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
..+++|+.+.+ .....+..+....+..+. ..-+..++...+.. .|++++=... +.-|+-+++.+. .++|+|
T Consensus 4 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 80 (208)
T 1yio_A 4 KPTVFVVDDDM-SVREGLRNLLRSAGFEVE--TFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCH-HHHHHHHHHHHhCCceEE--EcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 34667776654 244555555544443332 23355555444433 4777765443 456777777775 367776
Q ss_pred EcCC-c---CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VAST-G---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~-g---g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-.. . ...+.+..|..|++. .|.++++|.+.|..++..
T Consensus 81 ~ls~~~~~~~~~~a~~~Ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 81 FITAHGDIPMTVRAMKAGAIEFLP----------KPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EEESCTTSCCCHHHHHTTEEEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 5432 2 233445678889998 999999999999998865
No 236
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=31.22 E-value=47 Score=30.65 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=24.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhC--CCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~--Gh~V~vvt~~ 127 (586)
+.|+|++++. +|++| ..+++.|.++ ||+|.++..+
T Consensus 3 ~~~~ilVtGa-------sG~iG---~~l~~~l~~~~~g~~V~~~~r~ 39 (253)
T 1xq6_A 3 NLPTVLVTGA-------SGRTG---QIVYKKLKEGSDKFVAKGLVRS 39 (253)
T ss_dssp SCCEEEEEST-------TSHHH---HHHHHHHHHTTTTCEEEEEESC
T ss_pred CCCEEEEEcC-------CcHHH---HHHHHHHHhcCCCcEEEEEEcC
Confidence 4566666554 36665 4578888899 8999998754
No 237
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=30.96 E-value=37 Score=33.60 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=25.2
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+.|+|++++. +|++| ..|++.|.++||+|.++...
T Consensus 26 ~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 26 QPKVWLITGV-------AGFIG---SNLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp SCCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred cCCeEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 3577776654 35655 45788888999999998754
No 238
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=30.89 E-value=1.9e+02 Score=23.56 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=52.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEE-eccChHHHHHHHH---hccEEEEcCCC-CCCcHHHHHHHH--cCCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGV-AKFNIPLAHMIIA---GADFILIPSRF-EPCGLIQLHAMR--YGTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~-~~~~~~~~~~~l~---~aDi~l~PS~~-E~~gl~~lEAma--~G~Pv 503 (586)
+.+++|+.+.. .....++++..+.++ .... ..-+..++...+. ..|++++-... +.-|+.+++.+. ...|+
T Consensus 13 ~~~vlivdd~~-~~~~~l~~~L~~~~~-~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~i 90 (145)
T 3kyj_B 13 PYNVMIVDDAA-MMRLYIASFIKTLPD-FKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKI 90 (145)
T ss_dssp SEEEEEECSCH-HHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEE
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHhCCC-ceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 45555655543 355556665555422 3322 2235555555444 35888876554 445666776654 33555
Q ss_pred EEcCC--cC----cccccccCcceEEEccccccccCCCCCCHHHHHHHH
Q 007873 504 IVAST--GG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 546 (586)
Q Consensus 504 I~s~~--gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I 546 (586)
|.-.. .. ..+.+..|..+|+. .|-++++|...+
T Consensus 91 iil~~~~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~~i 129 (145)
T 3kyj_B 91 CMLSSVAVSGSPHAARARELGADGVVA----------KPSGTVSHDLEE 129 (145)
T ss_dssp C-CBSSCSTTSSHHHHHHHTTCSCCCB----------CCCSCC------
T ss_pred EEEEEeccCChHHHHHHHhCCCCEEEe----------CCCCHHHHHHHH
Confidence 43322 11 23455668888887 887755544443
No 239
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=30.87 E-value=27 Score=33.17 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=28.4
Q ss_pred CCceEEEEeccccCccccc--hHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTG--GLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~G--G~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++|||+.|... .| |-.+...+|+.+|+ +|++|.++=..
T Consensus 25 ~~~~vI~v~s~------kGGvGKTT~a~~LA~~la-~g~~VlliD~D 64 (267)
T 3k9g_A 25 KKPKIITIASI------KGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp -CCEEEEECCS------SSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred CCCeEEEEEeC------CCCchHHHHHHHHHHHHH-CCCCEEEEECC
Confidence 45787777653 34 44568888999999 99999999654
No 240
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=30.12 E-value=40 Score=34.06 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+..|||.+|+. |..| ..++..|++.||+|.++...
T Consensus 27 ~~~mkI~VIGa--------G~mG---~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 27 PFKHPIAILGA--------GSWG---TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCCSCEEEECC--------SHHH---HHHHHHHHTTTCCEEEECSC
T ss_pred ccCCeEEEECc--------cHHH---HHHHHHHHHCCCeEEEEeCC
Confidence 45799999985 3333 23788899999999988754
No 241
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=29.96 E-value=2e+02 Score=22.48 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=65.6
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHH--cCCcEEEc
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 506 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma--~G~PvI~s 506 (586)
.+++|+.+.+ .....+.......+..+. ..-+...+...+.. .|++++-... +.-|+.+++.+. ..+|+|.-
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 3 HHIVIVEDEP-VTQARLQSYFTQEGYTVS--VTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp CEEEEECSSH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEECCH-HHHHHHHHHHHHCCCeEE--EecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 3566666554 244455555444443332 23355555555543 5888775543 345777777775 35676554
Q ss_pred C-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
. ... ..+.+..|..+++. .|.+++++...|.+++..
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVT----------KPLELRELVVRVKNLLWR 119 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHcc----------CCCCHHHHHHHHHHHHHH
Confidence 3 222 23345568889998 999999999999988753
No 242
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=29.86 E-value=59 Score=30.82 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=27.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
|++++|++|++ +|.... ...+.+...++++|++|.+++-..
T Consensus 1 ~~~~~vL~v~a--HPDDe~----l~~Ggtia~~~~~G~~V~vv~lT~ 41 (242)
T 2ixd_A 1 MSGLHILAFGA--HADDVE----IGMAGTIAKYTKQGYEVGICDLTE 41 (242)
T ss_dssp -CCCSEEEEES--STTHHH----HHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CCCccEEEEEe--CCChHH----HhHHHHHHHHHHCCCeEEEEEEcC
Confidence 46789999998 475332 223344556677999999998763
No 243
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.63 E-value=43 Score=27.49 Aligned_cols=109 Identities=10% Similarity=-0.004 Sum_probs=60.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCC-CceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc---CCcE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY---GTVP 503 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~-~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~---G~Pv 503 (586)
..+++|+.+... ....++++..+.+ ..+. ..-+.+++...+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 14 ~~~ilivdd~~~-~~~~l~~~L~~~g~~~v~--~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 14 RKQVALFSSDPN-FKRDVATRLDALAIYDVR--VSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CEEEEEECSCHH-HHHHHHHHHHHTSSEEEE--EECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CcEEEEEcCCHH-HHHHHHHHHhhcCCeEEE--EeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 456777766542 4445555555544 2232 1123333322332 35777764432 3345555555443 6777
Q ss_pred EEcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 504 IVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|.-.... ..+.+..|..+++. .|.++++|...|.+++..
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLH----------KPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhcc----------CCCCHHHHHHHHHHHhcc
Confidence 6544322 33345668899998 999999999999988753
No 244
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=29.62 E-value=67 Score=32.67 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=50.6
Q ss_pred HHHHhccEEEEcCCC--CC-CcHHHHHHHHcCCcEEEcCCcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHH
Q 007873 472 MIIAGADFILIPSRF--EP-CGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 548 (586)
Q Consensus 472 ~~l~~aDi~l~PS~~--E~-~gl~~lEAma~G~PvI~s~~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ 548 (586)
++++..-+.|.--.. +. .-=++.+|+.+|+.+|.-..+-..+++.. ..++- + -+-.++++||+.|..
T Consensus 227 ~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp--~SfI~----~----~dF~s~~~La~yL~~ 296 (371)
T 2nzw_A 227 EFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNP--KSFVN----V----HDFKNFDEAIDYIKY 296 (371)
T ss_dssp HHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCG--GGSEE----G----GGSSSHHHHHHHHHH
T ss_pred HHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCCC--CceEE----c----ccCCCHHHHHHHHHH
Confidence 455666555543211 11 23357789999998888766656666643 33331 1 155789999999999
Q ss_pred HHHhcCHHHHHHHH
Q 007873 549 ALATYGTQALAEMM 562 (586)
Q Consensus 549 ll~~~~~~~~~~~~ 562 (586)
+-+| ++++.+.-
T Consensus 297 L~~n--~~~Y~~y~ 308 (371)
T 2nzw_A 297 LHTH--KNAYLDML 308 (371)
T ss_dssp HHTC--HHHHHHHH
T ss_pred HhcC--HHHHHHHH
Confidence 9988 77776544
No 245
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=29.56 E-value=4.3e+02 Score=26.22 Aligned_cols=111 Identities=9% Similarity=0.004 Sum_probs=65.6
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCCCCCcHH-HHHHHH-cCCcEEEcCCcC
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLI-QLHAMR-YGTVPIVASTGG 510 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~E~~gl~-~lEAma-~G~PvI~s~~gg 510 (586)
++++.+..+ .....++++..+.+..+........++..+.+..+|++++.+. ..+.-. +++++. .++-+|++...|
T Consensus 3 ki~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~-~~~~~~~~l~~~~~~~Lk~I~~~~~G 80 (343)
T 2yq5_A 3 KIAMYNVSP-IEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPL-GPVDEEVVYQKLSEYGVKCIGLRIVG 80 (343)
T ss_dssp EEEEESCCG-GGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCS-SCBCCHHHHHHHHHTTCCEEEESSSC
T ss_pred eEEEEecCc-ccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCC-CCcCHHHHHHhccccCceEEEECcee
Confidence 456666333 3455566665555433443333223444467899999987543 456666 899885 578889888777
Q ss_pred ccccccc--CcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 511 LVDTVEE--GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 511 ~~e~v~~--g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
...+-.+ ...|+.+ --+...+.+++|+....++-.
T Consensus 81 ~d~id~~~~~~~gI~v-------~n~p~~~~~~vAE~~~~l~L~ 117 (343)
T 2yq5_A 81 FNTINFDWTKKYNLLV-------TNVPVYSPRAIAEMTVTQAMY 117 (343)
T ss_dssp CTTBCSSTTCC--CEE-------ECCSCSCHHHHHHHHHHHHHH
T ss_pred ecccchhHHHhCCEEE-------EECCCCCcHHHHHHHHHHHHH
Confidence 6554332 2346665 112335678888877666643
No 246
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=29.51 E-value=34 Score=31.69 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=23.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 Mk~vlVTGa------s~gIG---~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVITGA------SSGLG---AELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEEST------TSHHH---HHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEecC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 676666642 46665 46889999999999888654
No 247
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=29.47 E-value=50 Score=31.00 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=29.9
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~ 127 (586)
|||++|... |. +.|-....+..+++.|.+. |++|.++-..
T Consensus 2 mkIliI~gS--~r-~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 2 NKIFIYAGV--RN-HNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CEEEEEECC--CC-TTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CeEEEEECC--CC-CCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 799999865 53 2355666777788888888 9999988544
No 248
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=29.46 E-value=37 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=24.6
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|+|++++. +|++|. .++++|.++||+|.+++..
T Consensus 4 ~~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 37 (321)
T 3c1o_A 4 MEKIIIYGG-------TGYIGK---FMVRASLSFSHPTFIYARP 37 (321)
T ss_dssp CCCEEEETT-------TSTTHH---HHHHHHHHTTCCEEEEECC
T ss_pred ccEEEEEcC-------CchhHH---HHHHHHHhCCCcEEEEECC
Confidence 467776654 355553 4788888999999998765
No 249
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=29.37 E-value=1.5e+02 Score=27.54 Aligned_cols=122 Identities=16% Similarity=0.037 Sum_probs=64.3
Q ss_pred cEEEEEe-cCccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--ChHHHHHHHHhcc-
Q 007873 403 PVIGFIG-RLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAGAD- 478 (586)
Q Consensus 403 ~~i~~iG-rl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~aD- 478 (586)
|+.+..+ +.....|.+..++.+... .+..+++|+-.......+.+...+++.++...... ..+.+..+...+|
T Consensus 82 pv~~~~~~~~~~~~~~~~~~~~~~~~---Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~ 158 (248)
T 1geq_A 82 PIVLMTYYNPIYRAGVRNFLAEAKAS---GVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTG 158 (248)
T ss_dssp CEEEEECHHHHHHHCHHHHHHHHHHH---TCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSS
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHC---CCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCC
Confidence 5555442 333455666677766665 67778888755333444555555555433333322 2344556777788
Q ss_pred EEEEcCCC--C----CCcH---HHHHHHHc--CCcEEEcC---C-cCcccccccCcceEEEccc
Q 007873 479 FILIPSRF--E----PCGL---IQLHAMRY--GTVPIVAS---T-GGLVDTVEEGFTGFQMGSF 527 (586)
Q Consensus 479 i~l~PS~~--E----~~gl---~~lEAma~--G~PvI~s~---~-gg~~e~v~~g~~G~~~~~~ 527 (586)
++.+-+.. . +++. ..++.+.. ++|+++.- . .-+.+++..|..|+++|+-
T Consensus 159 ~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsa 222 (248)
T 1geq_A 159 FVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSA 222 (248)
T ss_dssp EEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred eEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHH
Confidence 54222221 1 1222 24444433 78888753 1 1233355678999999743
No 250
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=29.24 E-value=2.6e+02 Score=23.57 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEe-ccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHHc--CCcE
Q 007873 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVA-KFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMRY--GTVP 503 (586)
Q Consensus 430 ~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~-~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma~--G~Pv 503 (586)
...+++|+.+... ....++++..+.++ ..... .-+..++...+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 24 ~~~~ILivdd~~~-~~~~l~~~L~~~~~-~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~i 101 (164)
T 3t8y_A 24 RVIRVLVVDDSAF-MRMVLKDIIDSQPD-MKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRV 101 (164)
T ss_dssp CCEEEEEECSCHH-HHHHHHHHHHTSTT-EEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEE
T ss_pred CccEEEEEcCCHH-HHHHHHHHHhcCCC-eEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceE
Confidence 4678888887653 45556666555543 22222 225555544443 46888876554 4567777776643 4566
Q ss_pred EEcCC-cC-----cccccccCcceEEEccccccccCCCCCC---------HHHHHHHHHHHHHh
Q 007873 504 IVAST-GG-----LVDTVEEGFTGFQMGSFSVDCEAVDPVD---------VAAVSTTVRRALAT 552 (586)
Q Consensus 504 I~s~~-gg-----~~e~v~~g~~G~~~~~~~~~~~~v~~~d---------~~~la~~I~~ll~~ 552 (586)
|.-.. .. ..+.+..|..+++. .|.+ .+++.++|.+++..
T Consensus 102 i~~s~~~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 102 IMVSSLTEEGAAITIEALRNGAVDFIT----------KPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp EEEESSCCTTCHHHHHHHHTTCCEEEE----------CSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred EEEecCCccchHHHHHHHHcCcCEEEe----------CCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 54332 21 22556678999998 8888 67888888877765
No 251
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.13 E-value=2.1e+02 Score=22.54 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=67.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~P 502 (586)
..+++|+.+... ....++++..+.+ ......-+..++...+.. .|++++-... +.-|+.+++.+.. .+|
T Consensus 3 ~~~ilivdd~~~-~~~~l~~~L~~~g--~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ 79 (127)
T 3i42_A 3 LQQALIVEDYQA-AAETFKELLEMLG--FQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSK 79 (127)
T ss_dssp CEEEEEECSCHH-HHHHHHHHHHHTT--EEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCE
T ss_pred cceEEEEcCCHH-HHHHHHHHHHHcC--CCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCC
Confidence 346777776543 4555666655555 222223355555555543 5887775543 5567778877754 467
Q ss_pred EEEcCCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 503 PIVASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 503 vI~s~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
+|...... ..+.+..|..+++. .|-++++|.+++......
T Consensus 80 ii~~s~~~~~~~~~~~~~g~~~~l~----------KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 80 FVAVSGFAKNDLGKEACELFDFYLE----------KPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEEECC-CTTCCHHHHHHCSEEEE----------SSCCHHHHHHHHHHHC--
T ss_pred EEEEECCcchhHHHHHHHhhHHhee----------CCCCHHHHHHHHHHhhcc
Confidence 76543222 13445567888987 999999999999988764
No 252
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=29.06 E-value=54 Score=31.51 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=28.9
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+||++.|+ . -+ .-|-.+...+||.+|+++|++|.++=..
T Consensus 1 ~MkvIavs-~-KG---GvGKTT~a~nLA~~La~~G~rVlliD~D 39 (289)
T 2afh_E 1 AMRQCAIY-G-KG---GIGKSTTTQNLVAALAEMGKKVMIVGCD 39 (289)
T ss_dssp CCEEEEEE-E-CT---TSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CceEEEEe-C-CC---cCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 48877775 2 22 2355568889999999999999998544
No 253
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=28.76 E-value=40 Score=32.62 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=22.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|||++.+. +|++| ..+++.|.++||+|.++..
T Consensus 1 m~vlVTGa-------tG~iG---~~l~~~L~~~G~~V~~~~r 32 (311)
T 2p5y_A 1 MRVLVTGG-------AGFIG---SHIVEDLLARGLEVAVLDN 32 (311)
T ss_dssp CEEEEETT-------TSHHH---HHHHHHHHTTTCEEEEECC
T ss_pred CEEEEEeC-------CcHHH---HHHHHHHHHCCCEEEEEEC
Confidence 66665543 35555 4578899999999988754
No 254
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=28.59 E-value=48 Score=32.91 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHh--CCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA--NGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~--~Gh~V~vvt~~ 127 (586)
+++|+|++.+. +|++| ..|++.|.+ .||+|.++...
T Consensus 8 ~~~~~vlVTGa-------tG~IG---~~l~~~L~~~~~g~~V~~~~r~ 45 (362)
T 3sxp_A 8 LENQTILITGG-------AGFVG---SNLAFHFQENHPKAKVVVLDKF 45 (362)
T ss_dssp CTTCEEEEETT-------TSHHH---HHHHHHHHHHCTTSEEEEEECC
T ss_pred cCCCEEEEECC-------CCHHH---HHHHHHHHhhCCCCeEEEEECC
Confidence 45677776654 35555 457888989 99999999754
No 255
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=28.43 E-value=73 Score=30.87 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=34.7
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|..||-+||+.-.-. .=|-|.....|..-|..+|++|+++-..
T Consensus 19 ~~~~~KyIfVTGGVvS---~lGKGi~aaSlg~lLk~~G~~Vt~~K~D 62 (295)
T 2vo1_A 19 YFQSMKYILVTGGVIS---GIGKGIIASSVGTILKSCGLHVTSIKID 62 (295)
T ss_dssp --CCCEEEEEEECSSS---SSSHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ccccceEEEEcCCccc---ccccHHHHHHHHHHHHHCCCcceeeecc
Confidence 3678999999976533 4577778999999999999999998653
No 256
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=28.39 E-value=51 Score=29.33 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=25.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|+.|||++-+. .+|.. .=..|...|.++||+|.=+.+
T Consensus 1 m~~MkIaigsD-------haG~~-lK~~i~~~L~~~G~eV~D~G~ 37 (162)
T 2vvp_A 1 MSGMRVYLGAD-------HAGYE-LKQRIIEHLKQTGHEPIDCGA 37 (162)
T ss_dssp --CCEEEEEEC-------HHHHH-HHHHHHHHHHHTTCEEEECSC
T ss_pred CCCCEEEEEeC-------chhHH-HHHHHHHHHHHCCCEEEEeCC
Confidence 34599876664 35555 444588899999999988754
No 257
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=28.39 E-value=43 Score=32.40 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=24.0
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|+. |.+| ..++..|++.||+|+++..+
T Consensus 3 ~m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGA--------GAMG---SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp -CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCeEEEECc--------CHHH---HHHHHHHHhCCCcEEEEECC
Confidence 489999984 3333 23678889999999998654
No 258
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=28.38 E-value=47 Score=33.19 Aligned_cols=35 Identities=34% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+.|+|++++. +|++|. .+++.|.++||+|.+++..
T Consensus 4 ~~~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 38 (352)
T 1xgk_A 4 QKKTIAVVGA-------TGRQGA---SLIRVAAAVGHHVRAQVHS 38 (352)
T ss_dssp CCCCEEEEST-------TSHHHH---HHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECC-------CCHHHH---HHHHHHHhCCCEEEEEECC
Confidence 4677776654 466654 4778888899999998754
No 259
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=28.32 E-value=2.8e+02 Score=25.57 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=37.3
Q ss_pred hccEEEEcCCC-----CCCcHHHHHHHHc--CCcEEEcCCcCcc------ccccc---CcceEEEccccccccCCCCCCH
Q 007873 476 GADFILIPSRF-----EPCGLIQLHAMRY--GTVPIVASTGGLV------DTVEE---GFTGFQMGSFSVDCEAVDPVDV 539 (586)
Q Consensus 476 ~aDi~l~PS~~-----E~~gl~~lEAma~--G~PvI~s~~gg~~------e~v~~---g~~G~~~~~~~~~~~~v~~~d~ 539 (586)
++|.+++.+.. .++.+..++.+.- ++|+|++ ||+. ++.+. |..|+++|+-... .+.+.
T Consensus 159 G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~--GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~----~~~~~ 232 (244)
T 1vzw_A 159 GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVAS--GGVSSLDDLRAIAGLVPAGVEGAIVGKALYA----KAFTL 232 (244)
T ss_dssp TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEE--SCCCSHHHHHHHHTTGGGTEEEEEECHHHHT----TSSCH
T ss_pred CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEE--CCCCCHHHHHHHHhhccCCCceeeeeHHHHc----CCCCH
Confidence 37877766542 3355666666654 8899987 3433 35555 8899999854333 33444
Q ss_pred HHHHH
Q 007873 540 AAVST 544 (586)
Q Consensus 540 ~~la~ 544 (586)
.++.+
T Consensus 233 ~~~~~ 237 (244)
T 1vzw_A 233 EEALE 237 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 260
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=28.21 E-value=46 Score=33.39 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.1
Q ss_pred hHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 102 GLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 102 G~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|-.+....||.+|+++|++|.++...
T Consensus 38 GKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 38 GKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp THHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 44557888999999999999999865
No 261
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=28.07 E-value=38 Score=33.16 Aligned_cols=32 Identities=6% Similarity=0.069 Sum_probs=26.1
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|||++++.. ....+++++.++||+|.++.+.
T Consensus 2 ~m~Ililg~g------------~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH------------SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST------------THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh------------hHHHHHHHHHhCCCEEEEEECC
Confidence 5899998842 3456899999999999999876
No 262
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.03 E-value=82 Score=27.45 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=31.5
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
..||+++-.+ + +|.+..++..+++.|.+.|++|.++-..
T Consensus 4 ~~kv~IvY~S--~---~GnT~~iA~~ia~~l~~~g~~v~~~~~~ 42 (159)
T 3fni_A 4 ETSIGVFYVS--E---YGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CCEEEEEECT--T---STTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEEEC--C---ChHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 4577777543 3 6999999999999999999999888654
No 263
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=28.01 E-value=1.3e+02 Score=28.02 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHH-hccEEEEcCCC-----CCCcHHHHHHHHc--CCcEEEcC-Cc---Cccccccc---CcceEEEccccccccCCC
Q 007873 471 HMIIA-GADFILIPSRF-----EPCGLIQLHAMRY--GTVPIVAS-TG---GLVDTVEE---GFTGFQMGSFSVDCEAVD 535 (586)
Q Consensus 471 ~~~l~-~aDi~l~PS~~-----E~~gl~~lEAma~--G~PvI~s~-~g---g~~e~v~~---g~~G~~~~~~~~~~~~v~ 535 (586)
..+.. ++|.+++.++. .++.+..++.+.- ++|+|++. +. -+.++... |..|+++|+-... .
T Consensus 156 ~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~----~ 231 (244)
T 2y88_A 156 ERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYA----R 231 (244)
T ss_dssp HHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT----T
T ss_pred HHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHC----C
Confidence 33443 37877766642 3456666666654 78999873 11 13335555 8899999854333 4
Q ss_pred CCCHHHHHH
Q 007873 536 PVDVAAVST 544 (586)
Q Consensus 536 ~~d~~~la~ 544 (586)
+.+..++.+
T Consensus 232 ~~~~~~~~~ 240 (244)
T 2y88_A 232 RFTLPQALA 240 (244)
T ss_dssp SSCHHHHHH
T ss_pred CcCHHHHHH
Confidence 445544433
No 264
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=28.01 E-value=68 Score=28.59 Aligned_cols=40 Identities=0% Similarity=0.003 Sum_probs=28.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhC------CCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN------GHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~------Gh~V~vvt~~ 127 (586)
|||++|... |. +.|-....+..+++.+.+. |++|.++-..
T Consensus 1 Mkilii~gS--~r-~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~ 46 (191)
T 1t0i_A 1 MKVGIIMGS--VR-AKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQ 46 (191)
T ss_dssp CEEEEEECC--CC-SSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHH
T ss_pred CeEEEEeCC--CC-CCCchHHHHHHHHHHHHHhhccCCCCceEEEEehh
Confidence 899999875 43 2344555666677888776 7999998543
No 265
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=27.56 E-value=47 Score=30.79 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++..+
T Consensus 12 s~gIG---~~~a~~l~~~G~~V~~~~r~ 36 (236)
T 1ooe_A 12 KGALG---SAILEFFKKNGYTVLNIDLS 36 (236)
T ss_dssp TSHHH---HHHHHHHHHTTEEEEEEESS
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEecC
Confidence 46665 45889999999999988654
No 266
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=27.51 E-value=52 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=24.6
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHH-hCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALA-ANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~-~~Gh~V~vvt~~ 127 (586)
+|+|++.+. +|++| ..|++.|. ++||+|.++...
T Consensus 2 ~m~vlVTGa-------tG~iG---~~l~~~L~~~~g~~V~~~~r~ 36 (397)
T 1gy8_A 2 HMRVLVCGG-------AGYIG---SHFVRALLRDTNHSVVIVDSL 36 (397)
T ss_dssp CCEEEEETT-------TSHHH---HHHHHHHHHHCCCEEEEEECC
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHHhCCCEEEEEecC
Confidence 588776553 35555 45788888 999999998754
No 267
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=27.51 E-value=51 Score=30.23 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=24.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++++. |.+-..+++.|.+.||+|.++...
T Consensus 1 M~iiIiG~-----------G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGG-----------ETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECC-----------HHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECC-----------CHHHHHHHHHHHhCCCeEEEEECC
Confidence 67777662 345556899999999999999754
No 268
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=27.48 E-value=3.4e+02 Score=24.62 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=63.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHH-HHHhccEE-EEcCCCCCC-cHHHHHHHH--c-CCcEE
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM-IIAGADFI-LIPSRFEPC-GLIQLHAMR--Y-GTVPI 504 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~-~l~~aDi~-l~PS~~E~~-gl~~lEAma--~-G~PvI 504 (586)
...+++.|..+....+..+ +++..+ ..+..+..++.. .-.++|.+ ++| .+.. |...+.++. + .+|++
T Consensus 83 GAd~v~~~~~d~~v~~~~~----~~g~~~-i~G~~t~~e~~~A~~~Gad~v~~fp--a~~~gG~~~lk~l~~~~~~ipvv 155 (207)
T 2yw3_A 83 GAAFLVSPGLLEEVAALAQ----ARGVPY-LPGVLTPTEVERALALGLSALKFFP--AEPFQGVRVLRAYAEVFPEVRFL 155 (207)
T ss_dssp TCSEEEESSCCHHHHHHHH----HHTCCE-EEEECSHHHHHHHHHTTCCEEEETT--TTTTTHHHHHHHHHHHCTTCEEE
T ss_pred CCCEEEcCCCCHHHHHHHH----HhCCCE-EecCCCHHHHHHHHHCCCCEEEEec--CccccCHHHHHHHHhhCCCCcEE
Confidence 4567777755433322222 233212 223344444433 44578977 444 3666 777777765 3 78888
Q ss_pred EcC---CcCcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VAS---TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~---~gg~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
++- ..-+.+++.-|..|+.+|+-... .|++++.+..+++++.
T Consensus 156 aiGGI~~~n~~~~l~aGa~~vavgSai~~------~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 156 PTGGIKEEHLPHYAALPNLLAVGGSWLLQ------GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp EBSSCCGGGHHHHHTCSSBSCEEESGGGS------SCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCCcEEEEehhhhC------CCHHHHHHHHHHHHHH
Confidence 763 22346677778888888754333 7777777777776654
No 269
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=27.34 E-value=48 Score=31.37 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=20.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|+.| ..+|++++++|++|++++..
T Consensus 28 SG~mG---~aiA~~~~~~Ga~V~lv~~~ 52 (232)
T 2gk4_A 28 TGHLG---KIITETLLSAGYEVCLITTK 52 (232)
T ss_dssp CCHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 56666 44799999999999999865
No 270
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=27.32 E-value=2.6e+02 Score=25.92 Aligned_cols=72 Identities=17% Similarity=0.091 Sum_probs=41.4
Q ss_pred HHHHH-hccEEEEcCCC-----CCCcHHHHHHHHc--CCcEEEcC-Cc---CcccccccCcceEEEccccccccCCCCCC
Q 007873 471 HMIIA-GADFILIPSRF-----EPCGLIQLHAMRY--GTVPIVAS-TG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVD 538 (586)
Q Consensus 471 ~~~l~-~aDi~l~PS~~-----E~~gl~~lEAma~--G~PvI~s~-~g---g~~e~v~~g~~G~~~~~~~~~~~~v~~~d 538 (586)
..+.. +++.+++++.. .++.+..++.+.- ++|+|++. +. -+.++...|..|+++|+-.+. .+.+
T Consensus 158 ~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~----~~~~ 233 (253)
T 1thf_D 158 VEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF----REID 233 (253)
T ss_dssp HHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT----TCSC
T ss_pred HHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc----CCCC
Confidence 33433 36877766542 2345667766654 89999874 11 123345567899999854443 3446
Q ss_pred HHHHHHHH
Q 007873 539 VAAVSTTV 546 (586)
Q Consensus 539 ~~~la~~I 546 (586)
+.+..+.+
T Consensus 234 ~~~~~~~l 241 (253)
T 1thf_D 234 VRELKEYL 241 (253)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554443
No 271
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=27.12 E-value=42 Score=31.79 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
..|||.||+.- - .|+ .|+..|.+.||+|..+..
T Consensus 5 ~~mkI~IIG~G--~---~G~------sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 5 PRLRVGIFDDG--S---STV------NMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCEEEEECCS--C---CCS------CHHHHHHHTTCEEEECSS
T ss_pred CCcEEEEEeeC--H---HHH------HHHHHHHHCCCEEEEecC
Confidence 46999999853 1 333 389999999999988754
No 272
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=27.11 E-value=70 Score=30.80 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=28.0
Q ss_pred ceEEEEeccccCccccchH-HHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~-~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||||+|... |. .+|. ......+.+.|.+.||+|.++-..
T Consensus 3 mkiLiI~gS--pr--~~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 3 RRALIVLAH--SE--RTSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CEEEEEEeC--CC--CccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 799999875 53 2444 445555777788899999998654
No 273
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=27.09 E-value=1.9e+02 Score=28.66 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=63.9
Q ss_pred ecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCe
Q 007873 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENV 432 (586)
Q Consensus 353 I~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v 432 (586)
|.||.| ...+|... ..+--.+++++|-- +...|.|+|-+ ..=..-++.++..+ .+
T Consensus 128 VINag~-~~~HPtQa----------------LaDl~Ti~e~~g~l---~glkva~vGD~--~rva~Sl~~~~~~~---G~ 182 (323)
T 3gd5_A 128 VINALT-DHEHPCQV----------------VADLLTIRENFGRL---AGLKLAYVGDG--NNVAHSLLLGCAKV---GM 182 (323)
T ss_dssp EEEEEC-SSCCHHHH----------------HHHHHHHHHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHH---TC
T ss_pred EEeCCC-CCCCcHHH----------------HHHHHHHHHHhCCC---CCCEEEEECCC--CcHHHHHHHHHHHc---CC
Confidence 357777 67777531 12344567777732 34689999988 22245567777776 68
Q ss_pred EEEEEeCCC----hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCC
Q 007873 433 QIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (586)
Q Consensus 433 ~lvIvG~g~----~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~ 485 (586)
++.+++... +...+.+++.+.+.+..+... + .+.+.+.+||++.....
T Consensus 183 ~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~---~--d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 183 SIAVATPEGFTPDPAVSARASEIAGRTGAEVQIL---R--DPFEAARGAHILYTDVW 234 (323)
T ss_dssp EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE---S--CHHHHHTTCSEEEECCC
T ss_pred EEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEE---C--CHHHHhcCCCEEEEece
Confidence 999999743 234445555555555445422 1 23457899999887654
No 274
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=26.98 E-value=64 Score=28.85 Aligned_cols=41 Identities=5% Similarity=-0.006 Sum_probs=28.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCC--CeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G--h~V~vvt~~ 127 (586)
|||++|... |....|-....+..+++.+.+.| ++|.++-..
T Consensus 2 mkilii~~S--~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSS--ILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECC--SSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeC--CCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 799999865 53112445556667888888876 899888654
No 275
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=26.96 E-value=2.3e+02 Score=22.31 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=66.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CCc
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTV 502 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~P 502 (586)
..+++|+.+.+. ....+..+....+.... ...-+.+.+...+.. .|++++=... +.-|+.+++.+.. .+|
T Consensus 6 ~~~ilivdd~~~-~~~~l~~~L~~~g~~~v-~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVT-SRLLLGDALQQLGFKQI-TAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHH-HHHHHHHHHHTTTCSCE-ECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHH-HHHHHHHHHHHCCCcEE-EecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 356777776542 44455555444432111 122245555555543 5888775544 3467778887753 567
Q ss_pred EEEcCCcCc----ccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHH
Q 007873 503 PIVASTGGL----VDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 551 (586)
Q Consensus 503 vI~s~~gg~----~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~ 551 (586)
+|.-...+- .+.+..|..+++. .|.++++|.++|.+++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLA----------KPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEEC----------CCSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCHHHHHHHHHHHHH
Confidence 766543322 2345568889987 99999999999998875
No 276
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=26.86 E-value=32 Score=31.54 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=23.0
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEE-EE
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVM-TI 124 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~-vv 124 (586)
|++|||++|... |. .+|....+.+......+.|++|. ++
T Consensus 4 M~~mkIl~I~GS--~r--~~s~t~~la~~~~~~~~~g~~v~~~i 43 (199)
T 4hs4_A 4 TSPLHFVTLLGS--LR--KASFNAAVARALPEIAPEGIAITPLG 43 (199)
T ss_dssp -CCEEEEEEECC--CS--TTCHHHHHHHHHHHHCCTTEEEEECC
T ss_pred CCCCEEEEEEcC--CC--CCChHHHHHHHHHHHccCCCEEEEEE
Confidence 667999999875 43 45554444443333334688887 44
No 277
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=26.65 E-value=2e+02 Score=28.55 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=32.7
Q ss_pred HHHHHHhccEEEEc--CCCC---CCcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILIP--SRFE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~P--S~~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++- ..-+ -++-..++.|--|.-+|-+..|++.+
T Consensus 188 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRg~~vd 236 (334)
T 2pi1_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD 236 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEeCCCChHHHHhhCHHHHhhCCCCcEEEECCCCcccC
Confidence 55689999998763 3323 35556888888899888888888655
No 278
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=26.43 E-value=5.1e+02 Score=26.12 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=67.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh--ccEEEEcCCC-CCCcHHHHHHHHc-----CCcEE
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY-----GTVPI 504 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDi~l~PS~~-E~~gl~~lEAma~-----G~PvI 504 (586)
+++|+.+.+. ....+..+....+..+ ...-++.++...+.. -|++++=-.. +.-|+-+++.+.. .+|||
T Consensus 3 ~iLivdD~~~-~~~~l~~~L~~~~~~v--~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 3 RILVVDDIEA-NVRLLEAKLTAEYYEV--STAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp EEEEECSSTT-HHHHHHHHHHHTTCEE--EEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred eEEEEeCCHH-HHHHHHHHHHHcCCEE--EEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4666666542 4455555544444222 223355555555543 5888775543 3467778887763 46776
Q ss_pred EcC-CcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~-~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-. .+. ..+.+..|..+++. .|-++++|...|.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~----------KP~~~~~l~~~i~~~~~~ 121 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLT----------KPIDDVMLFARVRSLTRF 121 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 543 332 23445668899998 999999999999998875
No 279
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=26.32 E-value=73 Score=30.99 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=30.2
Q ss_pred CCCceEEEEeccccCccccchH-HHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~-~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+..|||++|... |. .+|. ...+..+++.+.+.|++|.++-..
T Consensus 56 ~~~mKILiI~GS--~R--~~S~T~~La~~~~~~l~~~G~eveiidL~ 98 (279)
T 2fzv_A 56 APPVRILLLYGS--LR--ARSFSRLAVEEAARLLQFFGAETRIFDPS 98 (279)
T ss_dssp CSCCEEEEEESC--CS--SSCHHHHHHHHHHHHHHHTTCEEEEBCCT
T ss_pred CCCCEEEEEEeC--CC--CCCHHHHHHHHHHHHHhhCCCEEEEEehh
Confidence 346999999975 43 3454 445556788888889999998643
No 280
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.30 E-value=42 Score=33.99 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=29.4
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++||++-|.+.- + .-|-.+...+||.+|+++|++|.++-..
T Consensus 141 ~~~kvIav~s~K-G---GvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPC-G---GVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSS-T---TSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCC-C---CChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 457776666431 1 2345568888999999999999999654
No 281
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=26.29 E-value=56 Score=32.44 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=23.3
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|++|||+|+++ |. +.....++|.+.||+|..|...
T Consensus 5 ~~~mrivf~Gt---~~--------fa~~~L~~L~~~~~~v~~Vvt~ 39 (318)
T 3q0i_A 5 SQSLRIVFAGT---PD--------FAARHLAALLSSEHEIIAVYTQ 39 (318)
T ss_dssp --CCEEEEECC---SH--------HHHHHHHHHHTSSSEEEEEECC
T ss_pred ccCCEEEEEec---CH--------HHHHHHHHHHHCCCcEEEEEcC
Confidence 46899999986 21 2333456777889998877654
No 282
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=26.21 E-value=43 Score=30.16 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=24.6
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCC--eEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh--~V~vvt~~ 127 (586)
+|+|++++. +|++| ..+++.|.++|+ +|.+++.+
T Consensus 5 ~~~vlVtGa-------tG~iG---~~l~~~l~~~g~~~~V~~~~r~ 40 (215)
T 2a35_A 5 PKRVLLAGA-------TGLTG---EHLLDRILSEPTLAKVIAPARK 40 (215)
T ss_dssp CCEEEEECT-------TSHHH---HHHHHHHHHCTTCCEEECCBSS
T ss_pred CceEEEECC-------CcHHH---HHHHHHHHhCCCCCeEEEEeCC
Confidence 578877664 36655 457888999998 88887654
No 283
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=26.20 E-value=2.5e+02 Score=22.50 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=66.2
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHh-------ccEEEEcCCC-CCCcHHHHHHHHc----
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG-------ADFILIPSRF-EPCGLIQLHAMRY---- 499 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~-------aDi~l~PS~~-E~~gl~~lEAma~---- 499 (586)
.+++|+.+.+ .....++.+....+.... ...-+..++...+.. .|++++=-.. +.-|+-+++.+..
T Consensus 3 ~~ILivdD~~-~~~~~l~~~L~~~g~~~v-~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~ 80 (133)
T 2r25_B 3 VKILVVEDNH-VNQEVIKRMLNLEGIENI-ELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGY 80 (133)
T ss_dssp SCEEEECSCH-HHHHHHHHHHHHTTCCCE-EEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCC
T ss_pred ceEEEEcCCH-HHHHHHHHHHHHcCCceE-EEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCC
Confidence 4566666654 244555555544442211 122355555555543 5888875543 3467777777752
Q ss_pred CCcEEEc-CCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 500 GTVPIVA-STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 500 G~PvI~s-~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.+|+|.- .... ..+....|..|++. .|-++++|.+.|.+++..
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGFLS----------KPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 4677643 3333 23455678899998 999999999999988754
No 284
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=26.19 E-value=41 Score=32.41 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=24.1
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|+|++++. +|++|. .++++|.++||+|.+++..
T Consensus 2 ~~~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 35 (307)
T 2gas_A 2 ENKILILGP-------TGAIGR---HIVWASIKAGNPTYALVRK 35 (307)
T ss_dssp CCCEEEEST-------TSTTHH---HHHHHHHHHTCCEEEEECC
T ss_pred CcEEEEECC-------CchHHH---HHHHHHHhCCCcEEEEECC
Confidence 366776664 355553 4778888899999988754
No 285
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=26.18 E-value=2e+02 Score=25.96 Aligned_cols=110 Identities=7% Similarity=-0.028 Sum_probs=65.2
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEec-cChHH-HHHHH--HhccEEEEcCCC-CCCcHHHHHHHHc----CC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK-FNIPL-AHMII--AGADFILIPSRF-EPCGLIQLHAMRY----GT 501 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~-~~~~~-~~~~l--~~aDi~l~PS~~-E~~gl~~lEAma~----G~ 501 (586)
..+++|+.+.+. ....++.+....++ ...... .+... +..++ ...|++++=... +.-|+-+++.+.. .+
T Consensus 7 ~~~IlivdD~~~-~~~~l~~~L~~~~~-~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 84 (225)
T 3klo_A 7 KLNVRMLSDVCM-QSRLLKEALESKLP-LALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDA 84 (225)
T ss_dssp SEEEEEESCCSH-HHHHHHHHHHHHSS-EEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTC
T ss_pred ceEEEEEcCcHH-HHHHHHHHHhhCCC-ceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCC
Confidence 567888887663 44455555443222 222222 23332 22222 346888875443 3456666666543 67
Q ss_pred cEEEcCC-c---CcccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 VPIVAST-G---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 PvI~s~~-g---g~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
|+|.-.. . ........|..||+. .|.++++|.++|..++..
T Consensus 85 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 85 KEVIINCPQDIEHKLLFKWNNLAGVFY----------IDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEEEEEECTTCCHHHHTTSTTEEEEEE----------TTCCHHHHHHHHHHHHTT
T ss_pred cEEEEECCcchhHHHHHHHhCCCEEEe----------cCCCHHHHHHHHHHHHCC
Confidence 7765432 2 233345678899998 999999999999999864
No 286
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=26.13 E-value=46 Score=32.35 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=23.3
Q ss_pred eEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 86 kIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|++++. +|++| ..++++|.++||+|.+++..
T Consensus 13 ~ilVtGa-------tG~iG---~~l~~~L~~~g~~V~~l~R~ 44 (318)
T 2r6j_A 13 KILIFGG-------TGYIG---NHMVKGSLKLGHPTYVFTRP 44 (318)
T ss_dssp CEEEETT-------TSTTH---HHHHHHHHHTTCCEEEEECT
T ss_pred eEEEECC-------CchHH---HHHHHHHHHCCCcEEEEECC
Confidence 6766654 35555 34788889999999998765
No 287
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=25.97 E-value=2.2e+02 Score=26.54 Aligned_cols=117 Identities=11% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEe-ccChHHHHHHHHhccEEEEcCCCCCCcHHHHHHHH
Q 007873 420 LAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMR 498 (586)
Q Consensus 420 Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~-~~~~~~~~~~l~~aDi~l~PS~~E~~gl~~lEAma 498 (586)
-...+..|.+....++++-.. ....++++..... +.... .|.. ..+..+|+++...-.+.....+.++..
T Consensus 43 a~~ka~~Ll~~GA~VtVvap~---~~~~l~~l~~~~~--i~~i~~~~~~----~dL~~adLVIaAT~d~~~N~~I~~~ak 113 (223)
T 3dfz_A 43 ATRRIKGFLQEGAAITVVAPT---VSAEINEWEAKGQ--LRVKRKKVGE----EDLLNVFFIVVATNDQAVNKFVKQHIK 113 (223)
T ss_dssp HHHHHHHHGGGCCCEEEECSS---CCHHHHHHHHTTS--CEEECSCCCG----GGSSSCSEEEECCCCTHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCEEEEECCC---CCHHHHHHHHcCC--cEEEECCCCH----hHhCCCCEEEECCCCHHHHHHHHHHHh
Confidence 333444444434444444432 2234555554322 33322 2222 246788888876554444444555445
Q ss_pred cCCcEEEcCCcCcccccccC---cceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 499 YGTVPIVASTGGLVDTVEEG---FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 499 ~G~PvI~s~~gg~~e~v~~g---~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.|+||-+.|.+..-+++... ..++.++ +-..+..-.+|..|++-++.
T Consensus 114 ~gi~VNvvD~p~~~~f~~Paiv~rg~l~ia-------IST~G~sP~la~~iR~~ie~ 163 (223)
T 3dfz_A 114 NDQLVNMASSFSDGNIQIPAQFSRGRLSLA-------ISTDGASPLLTKRIKEDLSS 163 (223)
T ss_dssp TTCEEEC-----CCSEECCEEEEETTEEEE-------EECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcccCeEEEeeEEEeCCEEEE-------EECCCCCcHHHHHHHHHHHH
Confidence 89999888876655544321 1122221 01345556788888877765
No 288
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=25.59 E-value=49 Score=35.09 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=26.0
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|||++++. +|.+| ..|++.|.++||+|.+++..
T Consensus 147 ~m~VLVTGa-------tG~IG---~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 147 PLTVAITGS-------RGLVG---RALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCEEEEEST-------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECC-------CCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 588887764 35555 45788899999999999865
No 289
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=25.59 E-value=53 Score=30.33 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=25.2
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|||.+|+. |.+| ..++..|++.||+|.+++.+
T Consensus 21 m~mmkI~IIG~--------G~mG---~~la~~l~~~g~~V~~v~~r 55 (220)
T 4huj_A 21 QSMTTYAIIGA--------GAIG---SALAERFTAAQIPAIIANSR 55 (220)
T ss_dssp GGSCCEEEEEC--------HHHH---HHHHHHHHHTTCCEEEECTT
T ss_pred hcCCEEEEECC--------CHHH---HHHHHHHHhCCCEEEEEECC
Confidence 44589999983 3333 34888899999999985443
No 290
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=25.27 E-value=48 Score=33.64 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=25.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|+|++|+.- .+|+. .|..|++.||+|+|+=.+
T Consensus 1 m~~~~v~iiG~G------~~Gl~-----~A~~l~~~g~~v~v~E~~ 35 (384)
T 2bi7_A 1 MKSKKILIVGAG------FSGAV-----IGRQLAEKGHQVHIIDQR 35 (384)
T ss_dssp -CCCEEEEECCS------HHHHH-----HHHHHHTTTCEEEEEESS
T ss_pred CCcCCEEEECcC------HHHHH-----HHHHHHHCCCcEEEEEec
Confidence 456899999853 24444 677888899999999654
No 291
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=25.21 E-value=67 Score=28.71 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=31.1
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHh-CCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~-~Gh~V~vvt~~ 127 (586)
|||++|... + +|.....+..+++.|.+ .|++|.++...
T Consensus 5 ~kiliiy~S--~---~GnT~~~a~~i~~~l~~~~g~~v~~~~l~ 43 (188)
T 2ark_A 5 GKVLVIYDT--R---TGNTKKMAELVAEGARSLEGTEVRLKHVD 43 (188)
T ss_dssp EEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred CEEEEEEEC--C---CcHHHHHHHHHHHHHhhcCCCeEEEEEhh
Confidence 689988654 3 68888888999999998 99999988654
No 292
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=25.19 E-value=54 Score=30.22 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||+++|+.- .||+| ..+++.|+++|++|.++...
T Consensus 2 ~k~vlITGa------s~gIG---~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGA------SRGIG---EAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESC------SSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 566666642 46665 46899999999998887654
No 293
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=25.14 E-value=57 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=23.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++|+. |.+| ..++..|++.||+|+++...
T Consensus 1 m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 1 MKITVLGC--------GALG---QLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECc--------CHHH---HHHHHHHHhCCCCEEEEEcC
Confidence 78888874 3333 24788889999999998654
No 294
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=25.06 E-value=2.8e+02 Score=24.77 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=66.4
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH--cCCcEEEc
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA 506 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma--~G~PvI~s 506 (586)
.+++|+.+.+ .....+..+....+..+. ..-+.+++...+. ..|++++-... +.-|+.+++.+. ..+|+|.-
T Consensus 5 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 5 TSVLIVEDEE-SLADPLAFLLRKEGFEAT--VVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred CeEEEEeCCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 4667777654 244555555555443332 2335555544443 46888875543 445777776664 46777654
Q ss_pred CCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 STGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.... ..+.+..|..|++. .|.++++|.++|..++..
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVT----------KPYSARELIARIRAVLRR 121 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCC----------SSCCHHHHHHHHHHHHTT
T ss_pred eCCCcHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 3222 23344567888886 899999999999999864
No 295
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=25.04 E-value=75 Score=30.77 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=29.6
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.+|||+.|+ . -+ .-|-.+...+||.+|+++|++|.++=..
T Consensus 39 ~~~~vI~v~-~-KG---GvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVY-G-KG---GIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEE-C-ST---TSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCceEEEEE-C-CC---CccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357777776 3 22 3455668899999999999999999654
No 296
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=25.02 E-value=73 Score=32.41 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=28.3
Q ss_pred ceEEEEeccccCccccchHHH--HhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~--~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|+|++++. .||+|. ....|+.+|+++|++|.++..
T Consensus 2 ~~i~~~~g-------kGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 2 ALILTFLG-------KSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp CEEEEEEC-------SBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cEEEEEeC-------CCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 68888875 366665 667899999999999999986
No 297
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=24.99 E-value=61 Score=30.65 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=19.3
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++..+
T Consensus 16 s~gIG---~~ia~~l~~~G~~V~~~~r~ 40 (267)
T 2gdz_A 16 AQGIG---RAFAEALLLKGAKVALVDWN 40 (267)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCcHH---HHHHHHHHHCCCEEEEEECC
Confidence 46666 45888999999999888643
No 298
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=24.95 E-value=67 Score=30.18 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=25.1
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
....|||.||+. |..| ..++..|++.||+|.++...
T Consensus 16 ~~~~~kIgiIG~--------G~mG---~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 16 YFQGMKIAVLGT--------GTVG---RTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp ---CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred ccCCCeEEEECC--------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 345799999973 3333 33788999999999988654
No 299
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=24.87 E-value=1.4e+02 Score=27.62 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=22.7
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCC--eEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh--~V~vvt~~ 127 (586)
|||+|+.+- .+..+..+.++|.+.+| +|..|...
T Consensus 2 ~rI~vl~SG---------~g~~~~~~l~~l~~~~~~~~i~~Vvs~ 37 (216)
T 2ywr_A 2 LKIGVLVSG---------RGSNLQAIIDAIESGKVNASIELVISD 37 (216)
T ss_dssp EEEEEEECS---------CCHHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 689988642 22356778888888888 66555443
No 300
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=24.70 E-value=77 Score=30.89 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.++|++.|+.. -| .-|-.....+||..|++.|.+|.+|-..
T Consensus 102 ~~~kvI~vts~-kg---G~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 102 TENNILMITGA-TP---DSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CSCCEEEEEES-SS---SSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECC-CC---CCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45788877764 12 3466778999999999999999999654
No 301
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=24.68 E-value=1.2e+02 Score=24.53 Aligned_cols=44 Identities=7% Similarity=-0.122 Sum_probs=31.8
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecCCCc
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY 131 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~~~~ 131 (586)
|..|||+.+... .-|.+..+..+-+++.++|.++.+........
T Consensus 1 M~mkkIll~Cg~------G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~ 44 (106)
T 1e2b_A 1 MEKKHIYLFSSA------GMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA 44 (106)
T ss_dssp CCCEEEEEECSS------STTTHHHHHHHHHHHHHSCCSEEEEEECSSST
T ss_pred CCCcEEEEECCC------chhHHHHHHHHHHHHHHCCCCeEEEEecHHHH
Confidence 345689998864 23445677788899999999999887665443
No 302
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=24.67 E-value=45 Score=32.78 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=18.2
Q ss_pred cchHHHHhhhhHHHHHhC--CCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAAN--GHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~--Gh~V~vvt~~ 127 (586)
+|++| ..|++.|.++ ||+|.++...
T Consensus 13 tG~iG---~~l~~~L~~~~~g~~V~~~~r~ 39 (348)
T 1oc2_A 13 AGFIG---SNFVHYVYNNHPDVHVTVLDKL 39 (348)
T ss_dssp TSHHH---HHHHHHHHHHCTTCEEEEEECC
T ss_pred ccHHH---HHHHHHHHHhCCCCEEEEEeCC
Confidence 35555 4578888888 8999988754
No 303
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=24.58 E-value=73 Score=29.82 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=25.0
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+.++++|++.+. .||+|. .+++.|+++|++|.++..+
T Consensus 16 ~~~~k~vlVTGa-------s~gIG~---~~a~~l~~~G~~V~~~~r~ 52 (249)
T 1o5i_A 16 GIRDKGVLVLAA-------SRGIGR---AVADVLSQEGAEVTICARN 52 (249)
T ss_dssp CCTTCEEEEESC-------SSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred ccCCCEEEEECC-------CCHHHH---HHHHHHHHCCCEEEEEcCC
Confidence 344555555443 467664 4789999999999888644
No 304
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=24.57 E-value=2.7e+02 Score=22.25 Aligned_cols=109 Identities=6% Similarity=0.105 Sum_probs=65.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH-hccEEEEcCCC-CCCcHHHHHHHH--c-----CC
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA-GADFILIPSRF-EPCGLIQLHAMR--Y-----GT 501 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~-~aDi~l~PS~~-E~~gl~~lEAma--~-----G~ 501 (586)
..+++|+.+.+. ....++.+....+..+. ..-+..++...+. ..|++++-... +.-|+-+++.+. . ..
T Consensus 7 ~~~ILivdd~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 83 (136)
T 1dcf_A 7 GLKVLVMDENGV-SRMVTKGLLVHLGCEVT--TVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQR 83 (136)
T ss_dssp TCEEEEECSCHH-HHHHHHHHHHHTTCEEE--EESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCC
T ss_pred CCeEEEEeCCHH-HHHHHHHHHHHcCCeEE--EeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCC
Confidence 467777776542 44555555555553332 2334555444443 23888875543 335666666664 1 23
Q ss_pred c-EE-EcCCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 502 V-PI-VASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 502 P-vI-~s~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
| +| .|.... ..+....|..+++. .|-++++|.+.|.+++..
T Consensus 84 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 84 PLLVALSGNTDKSTKEKCMSFGLDGVLL----------KPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CEEEEEESCCSHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHHSC
T ss_pred ceEEEEeCCCCHHHHHHHHHcCCCeEEE----------CCCCHHHHHHHHHHHhch
Confidence 4 44 444333 23345678899998 999999999999988754
No 305
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=24.52 E-value=51 Score=31.09 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=18.7
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||+| ..+++.|+++|++|.++..
T Consensus 30 sggiG---~~la~~l~~~G~~v~~~~r 53 (274)
T 1ja9_A 30 GRGIG---RGIAIELGRRGASVVVNYG 53 (274)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CchHH---HHHHHHHHHCCCEEEEEcC
Confidence 35655 4588899999999988765
No 306
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=24.46 E-value=61 Score=29.39 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=25.2
Q ss_pred ceEEEEeccccCccccchH-HHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGL-GDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~-~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++|... |. .++. ...+..+.+.+ +.|++|.++-..
T Consensus 1 MkiLiI~gs--pr--~~s~t~~l~~~~~~~~-~~g~~v~~~dL~ 39 (196)
T 3lcm_A 1 MKILIVYTH--PN--PTSFNAEILKQVQTNL-SKEHTVSTLDLY 39 (196)
T ss_dssp CEEEEEECC--SC--TTSHHHHHHHHHHHHS-CTTSEEEEEETT
T ss_pred CEEEEEEeC--CC--CCChHHHHHHHHHHHh-cCCCeEEEEEcc
Confidence 899999875 53 3443 33444455555 679999998654
No 307
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=24.16 E-value=66 Score=29.40 Aligned_cols=40 Identities=18% Similarity=0.050 Sum_probs=28.0
Q ss_pred ceEEEEeccccCccccch-HHHHhhhhHHHHHhC--CCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGG-LGDVLGGLPPALAAN--GHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG-~~~~~~~L~~~L~~~--Gh~V~vvt~~ 127 (586)
|||++|... |. ..+| ....+..+.+.+.+. |++|.++-..
T Consensus 2 mkiLii~gS--pr-~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 2 SRILAVHAS--PR-GERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCEEEEECC--SC-STTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CEEEEEEeC--CC-CCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 799999875 53 2234 444556677888877 9999998653
No 308
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=24.07 E-value=3.8e+02 Score=23.72 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=68.1
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~ 505 (586)
.+++|+.+.+ .....+..+....+..+ ....+..++...+. ..|++++-... +.-|+.+++.+. ..+|+|.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~g~~v--~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 3 VRVLVVEDER-DLADLITEALKKEMFTV--DVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CEEEEECSSH-HHHHHHHHHHHHTTCEE--EEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEEeCCH-HHHHHHHHHHHHCCCEE--EEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 3566776654 24455555555544333 23335555555544 35888775543 446777777765 3677765
Q ss_pred cCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 506 ASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 506 s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
-.... ..+.+..|..|++. .|.++++|.++|..++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLP----------KPFDLRELIARVRALIRR 120 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEe----------CCCCHHHHHHHHHHHHhh
Confidence 43322 34456678899998 999999999999998864
No 309
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=23.92 E-value=56 Score=31.03 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|..+|+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 23 m~~~k~vlITGa------s~gIG---~a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 23 MSDTPVVLVTGG------SRGIG---AAVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp -CCSCEEEETTT------TSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred ccCCCEEEEECC------CchHH---HHHHHHHHHCCCEEEEEcCC
Confidence 455677777642 46665 46889999999999887544
No 310
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=23.89 E-value=71 Score=30.12 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=27.5
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||+.|+ . -+ .-|-.+...+|+.+|+++|++|.++=..
T Consensus 1 M~vI~vs-~-KG---GvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 1 MRQVAIY-G-KG---GIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp CEEEEEE-E-CT---TSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CcEEEEe-c-CC---CCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 6766664 2 11 2345567889999999999999998544
No 311
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=23.88 E-value=64 Score=29.33 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=30.7
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||+++-.. .+|....+...++..|.+.|++|.++...
T Consensus 21 ~~kv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~v~~l~ 59 (191)
T 1bvy_F 21 NTPLLVLYGS-----NMGTAEGTARDLADIAMSKGFAPQVATLD 59 (191)
T ss_dssp CCCEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCCCEEEEGG
T ss_pred CCeEEEEEEC-----CChHHHHHHHHHHHHHHhCCCceEEeeHH
Confidence 4676666332 37999999999999999999999987654
No 312
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=23.86 E-value=54 Score=32.41 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCC-CeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G-h~V~vvt~~ 127 (586)
+++|+|++++. +|++| ..|++.|.++| |+|.++...
T Consensus 44 ~~~~~vlVtGa-------tG~iG---~~l~~~L~~~g~~~V~~~~r~ 80 (357)
T 2x6t_A 44 IEGRMIIVTGG-------AGFIG---SNIVKALNDKGITDILVVDNL 80 (357)
T ss_dssp ----CEEEETT-------TSHHH---HHHHHHHHHTTCCCEEEEECC
T ss_pred CCCCEEEEECC-------CcHHH---HHHHHHHHHCCCcEEEEEecC
Confidence 44688876654 35555 45788899999 999998754
No 313
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=23.82 E-value=89 Score=29.56 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=31.3
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
.||.+||+..- + .-|-..+...|+++|+++|.+|..+=|
T Consensus 20 m~k~i~ItgT~-t---~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 20 QGHMLFISATN-T---NAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp CCEEEEEEESS-T---TSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cCcEEEEEeCC-C---CCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 47889998752 2 357777889999999999999998854
No 314
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=23.80 E-value=2.5e+02 Score=21.64 Aligned_cols=107 Identities=12% Similarity=0.198 Sum_probs=62.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH--cCCcEEEc-
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVA- 506 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma--~G~PvI~s- 506 (586)
+++|+.+.+ .....+.+.....+..+. ...+..+....+. ..|++++-... +.-|+.+++.+. ..+|+|.-
T Consensus 3 ~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 3 NVLIVEDEQ-AIRRFLRTALEGDGMRVF--EAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp EEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEeCCH-HHHHHHHHHHhcCCCEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 456666554 244455555444443232 2234444333332 46887764433 335677777765 35666544
Q ss_pred CCcC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 507 STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 507 ~~gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.... ..+.+..|..+++. .|.+++++.+.|..++..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLS----------KPFGIGELQARLRVALRR 118 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEe----------CCcCHHHHHHHHHHHHHh
Confidence 3222 23345568889998 999999999999888753
No 315
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=23.78 E-value=3.4e+02 Score=26.60 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=76.5
Q ss_pred cCCEEEEe--CHHHHHHHhcCccCCCcchhhhhccCeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHH
Q 007873 316 ESDMVLTV--SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 393 (586)
Q Consensus 316 ~ad~vitv--S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (586)
.+|.|+.= ++...+++.+ ...+-|| ||.+ ...+|... ..+--.++++
T Consensus 94 ~~D~iviR~~~~~~~~~lA~-------------~~~vPVI-Na~~-~~~HPtQa----------------LaDl~Ti~e~ 142 (307)
T 2i6u_A 94 YVDAIVWRTFGQERLDAMAS-------------VATVPVI-NALS-DEFHPCQV----------------LADLQTIAER 142 (307)
T ss_dssp HEEEEEEECSSHHHHHHHHH-------------HCSSCEE-ESCC-SSCCHHHH----------------HHHHHHHHHH
T ss_pred hCCEEEEecCChhHHHHHHh-------------hCCCCEE-cCCC-CCcCccHH----------------HHHHHHHHHH
Confidence 36766553 4455555553 1144455 5765 67777531 2234456777
Q ss_pred hCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC----hhhHHHHHHHHHHCCCceEEEeccChHH
Q 007873 394 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIPL 469 (586)
Q Consensus 394 ~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~----~~~~~~l~~l~~~~~~~v~~~~~~~~~~ 469 (586)
.|-- +...|.|+|-. ...=..-++.++..+ ++++.++|... +...+.+++.+++.+.++... ..
T Consensus 143 ~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~-----~d 210 (307)
T 2i6u_A 143 KGAL---RGLRLSYFGDG-ANNMAHSLLLGGVTA---GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVT-----AD 210 (307)
T ss_dssp HSCC---TTCEEEEESCT-TSHHHHHHHHHHHHT---TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEE-----SC
T ss_pred hCCc---CCeEEEEECCC-CcCcHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----EC
Confidence 7632 33689999987 333356677788777 78999999743 224444556666666445433 22
Q ss_pred HHHHHHhccEEEEcCC
Q 007873 470 AHMIIAGADFILIPSR 485 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS~ 485 (586)
+.+.+.+||++.....
T Consensus 211 ~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 211 AHAAAAGADVLVTDTW 226 (307)
T ss_dssp HHHHHTTCSEEEECCS
T ss_pred HHHHhcCCCEEEecce
Confidence 3457899999988654
No 316
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=23.76 E-value=58 Score=31.82 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=24.8
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|+|++.+. +||+| ..+++.|.++||+|.++...
T Consensus 5 ~~~vlVTGa-------tG~iG---~~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 5 KGTILVTGG-------AGYIG---SHTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp SCEEEEETT-------TSHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred CcEEEEecC-------CcHHH---HHHHHHHHHCCCcEEEEecC
Confidence 467765553 46666 45888999999999988654
No 317
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=23.64 E-value=64 Score=31.73 Aligned_cols=33 Identities=39% Similarity=0.658 Sum_probs=24.6
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|+. |.+|.. ++..|++.||+|+++...
T Consensus 2 ~mkI~IiGa--------GaiG~~---~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 2 SLNILVIGT--------GAIGSF---YGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp -CEEEEESC--------CHHHHH---HHHHHHHTTCEEEEECST
T ss_pred CCEEEEECc--------CHHHHH---HHHHHHhCCCeEEEEeCC
Confidence 489999984 454433 677888899999999764
No 318
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=23.47 E-value=64 Score=29.35 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=19.2
Q ss_pred cchHHHHhhhhHHHHH-hCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALA-ANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~-~~Gh~V~vvt~~ 127 (586)
+||+| ..+++.|+ +.||+|.++..+
T Consensus 14 sg~iG---~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 14 AGQIA---QXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp TSHHH---HHHHHHHHHHCCCEEEEEESS
T ss_pred CcHHH---HHHHHHHHhcCCceEEEEecC
Confidence 46666 45788888 899999998754
No 319
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=23.24 E-value=64 Score=31.56 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=24.3
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|+. |.+|. -++..|+ .||+|+++...
T Consensus 2 ~mkI~IiGa--------Ga~G~---~~a~~L~-~g~~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIGG--------GSVGL---LCAYYLS-LYHDVTVVTRR 33 (307)
T ss_dssp CCEEEEECC--------SHHHH---HHHHHHH-TTSEEEEECSC
T ss_pred CCEEEEECC--------CHHHH---HHHHHHh-cCCceEEEECC
Confidence 589999984 55554 3566777 89999999765
No 320
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=23.19 E-value=60 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.0
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|++| ..|++.|.++||+|.++...
T Consensus 21 tG~iG---~~l~~~L~~~G~~V~~~~r~ 45 (321)
T 2pk3_A 21 AGFVG---KYLANHLTEQNVEVFGTSRN 45 (321)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CChHH---HHHHHHHHHCCCEEEEEecC
Confidence 35555 45888899999999998754
No 321
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=23.08 E-value=39 Score=32.59 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=24.4
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|+|++++. +|++|. .++++|.++||+|.+++..
T Consensus 4 ~~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~l~R~ 37 (308)
T 1qyc_A 4 RSRILLIGA-------TGYIGR---HVAKASLDLGHPTFLLVRE 37 (308)
T ss_dssp CCCEEEEST-------TSTTHH---HHHHHHHHTTCCEEEECCC
T ss_pred CCEEEEEcC-------CcHHHH---HHHHHHHhCCCCEEEEECC
Confidence 467776664 355553 4788889999999988754
No 322
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=22.98 E-value=4.1e+02 Score=25.70 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=64.3
Q ss_pred cEEEEEecCcccc-CHHHHHHHHhhcccCCeEEEEEeCCC---hhhHHHHHHHHHHCCC-ceEEEec-----cChHHHHH
Q 007873 403 PVIGFIGRLEEQK-GSDILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILYPE-KARGVAK-----FNIPLAHM 472 (586)
Q Consensus 403 ~~i~~iGrl~~~K-G~d~Ll~A~~~l~~~~v~lvIvG~g~---~~~~~~l~~l~~~~~~-~v~~~~~-----~~~~~~~~ 472 (586)
..++.+|.-+..+ +..++-+.++....++-+++++.+.. ..+.+...+.-.+++. .+..... .+.+...+
T Consensus 27 g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~ 106 (291)
T 3en0_A 27 PAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRL 106 (291)
T ss_dssp CCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHH
T ss_pred ceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHH
Confidence 4566777666543 34444444444444567888887633 2344444555555554 3433322 23355567
Q ss_pred HHHhccEEEEcC--------CCCCCcH--HHHHHHHcC-CcEEEcCCcC
Q 007873 473 IIAGADFILIPS--------RFEPCGL--IQLHAMRYG-TVPIVASTGG 510 (586)
Q Consensus 473 ~l~~aDi~l~PS--------~~E~~gl--~~lEAma~G-~PvI~s~~gg 510 (586)
.+..||++.++- .+...++ .+-|+...| +|++.++.|.
T Consensus 107 ~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA 155 (291)
T 3en0_A 107 FVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGA 155 (291)
T ss_dssp HHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHH
T ss_pred HHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHH
Confidence 899999999985 1233333 477777899 9999988764
No 323
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=22.76 E-value=82 Score=29.71 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=19.2
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++...
T Consensus 25 sggiG---~~~a~~l~~~G~~V~~~~r~ 49 (278)
T 2bgk_A 25 AGGIG---ETTAKLFVRYGAKVVIADIA 49 (278)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEcCC
Confidence 46666 45888999999999888543
No 324
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=22.69 E-value=4.1e+02 Score=23.61 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=23.4
Q ss_pred cHHHHHHHHc---CCcEEEcC---CcCcccccccCcceEEEccc
Q 007873 490 GLIQLHAMRY---GTVPIVAS---TGGLVDTVEEGFTGFQMGSF 527 (586)
Q Consensus 490 gl~~lEAma~---G~PvI~s~---~gg~~e~v~~g~~G~~~~~~ 527 (586)
|...+..+.. .+|++++. ...+.+++..|..|+.+|+.
T Consensus 137 g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~ 180 (205)
T 1wa3_A 137 GPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSA 180 (205)
T ss_dssp HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHH
T ss_pred CHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECcc
Confidence 4555555544 67777763 22344556678889988854
No 325
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=22.66 E-value=64 Score=32.27 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=24.7
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCC-CeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G-h~V~vvt~~ 127 (586)
.|+|++++. +|++| ..|++.|.++| |+|.++...
T Consensus 32 ~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~~V~~~~r~ 66 (377)
T 2q1s_A 32 NTNVMVVGG-------AGFVG---SNLVKRLLELGVNQVHVVDNL 66 (377)
T ss_dssp TCEEEEETT-------TSHHH---HHHHHHHHHTTCSEEEEECCC
T ss_pred CCEEEEECC-------ccHHH---HHHHHHHHHcCCceEEEEECC
Confidence 577776654 35555 45788899999 999998754
No 326
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=22.60 E-value=2.5e+02 Score=28.45 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=48.8
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHCCCceEEEecc--------ChHHHHHHHHhccEEEE--cCCCC----C---CcHHH
Q 007873 431 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--------NIPLAHMIIAGADFILI--PSRFE----P---CGLIQ 493 (586)
Q Consensus 431 ~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~--------~~~~~~~~l~~aDi~l~--PS~~E----~---~gl~~ 493 (586)
.-.+-|+|-|. +-..+.+.....+.++..+-.. ....+.++++.||++++ |...| . ++-..
T Consensus 119 gktvGIIGlG~--IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~ 196 (381)
T 3oet_A 119 DRTIGIVGVGN--VGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETL 196 (381)
T ss_dssp GCEEEEECCSH--HHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHH
T ss_pred CCEEEEEeECH--HHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHH
Confidence 34566666665 3344444444444334333211 11224578999999875 43334 3 45568
Q ss_pred HHHHHcCCcEEEcCCcCccc
Q 007873 494 LHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 494 lEAma~G~PvI~s~~gg~~e 513 (586)
++.|--|.-+|-+..|++.+
T Consensus 197 l~~mk~gailIN~aRG~vvd 216 (381)
T 3oet_A 197 IRRLKPGAILINACRGPVVD 216 (381)
T ss_dssp HHHSCTTEEEEECSCGGGBC
T ss_pred HhcCCCCcEEEECCCCcccC
Confidence 88888899999999998765
No 327
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=22.56 E-value=93 Score=28.51 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=28.0
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||++.|... -+ .-|-.+...+|+.+|+++|++|.++-..
T Consensus 2 ~~~i~v~s~-kg---GvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 2 GRIISIVSG-KG---GTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECS-ST---TSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEecC-CC---CCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 366666543 11 2355668899999999999999999654
No 328
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=22.52 E-value=70 Score=26.59 Aligned_cols=40 Identities=10% Similarity=-0.027 Sum_probs=29.4
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCC--CeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G--h~V~vvt~~ 127 (586)
.||++|+...-.| .. .......+|..+.++| |+|.++.-.
T Consensus 7 ~~K~~ivi~s~d~---~~-~~~~al~~A~~a~~~G~~~eV~i~~~G 48 (117)
T 2fb6_A 7 NDKLTILWTTDNK---DT-VFNMLAMYALNSKNRGWWKHINIILWG 48 (117)
T ss_dssp TSEEEEEECCCCH---HH-HHHTHHHHHHHHHHHTSCSEEEEEECS
T ss_pred CCeEEEEEEcCCh---HH-HHHHHHHHHHHHHHcCCCCcEEEEEEC
Confidence 4899999876433 21 2246788899999999 899999743
No 329
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=22.47 E-value=84 Score=28.41 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=27.5
Q ss_pred ceEEEEeccccCccc-cchHHHHhhhhHHHHHhCC--CeEEEEEe
Q 007873 85 LNILFVGTEVAPWSK-TGGLGDVLGGLPPALAANG--HRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~-~GG~~~~~~~L~~~L~~~G--h~V~vvt~ 126 (586)
|||++|... |... .|-....+..+.+.+.+.| ++|.++-.
T Consensus 2 ~kilii~gS--~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 2 SKLLVVKAH--PLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp CEEEEEECC--SSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CeEEEEEec--CCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 699999875 5311 2334445566888888887 99998853
No 330
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=22.44 E-value=2.7e+02 Score=21.44 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=64.0
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH--cCCcEEEcC
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR--YGTVPIVAS 507 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma--~G~PvI~s~ 507 (586)
+++|+.+.+ .....++......+..+. ...+..+....+. ..|++++-... +.-|+.+++.+. ..+|+|...
T Consensus 3 ~ilivdd~~-~~~~~l~~~l~~~~~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 3 KILIVDDEK-PISDIIKFNMTKEGYEVV--TAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred eEEEEcCCH-HHHHHHHHHHHhcCcEEE--EecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 456666544 244455555544443332 2335555444443 46888775543 345666666653 567776543
Q ss_pred CcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 508 TGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 508 ~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
... ..+.+..|..+++. .|.++++|.+.+.+++..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVT----------KPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEe----------CCCCHHHHHHHHHHHHcc
Confidence 322 22344568889998 999999999999988754
No 331
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=22.41 E-value=58 Score=31.00 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=23.9
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhC-CCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-GHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-Gh~V~vvt~~ 127 (586)
|||++++. +|++|. .+++.|.+. ||+|.+++.+
T Consensus 1 M~ilVtGa-------tG~iG~---~l~~~L~~~~g~~V~~~~R~ 34 (289)
T 3e48_A 1 MNIMLTGA-------TGHLGT---HITNQAIANHIDHFHIGVRN 34 (289)
T ss_dssp CCEEEETT-------TSHHHH---HHHHHHHHTTCTTEEEEESS
T ss_pred CEEEEEcC-------CchHHH---HHHHHHhhCCCCcEEEEECC
Confidence 67777664 466664 456668887 9999999865
No 332
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=22.40 E-value=45 Score=30.44 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=27.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|||++|... |. .++ ......+++++.+.|++|.++--
T Consensus 2 mkiLiI~gs--p~--~~~-s~l~~~l~~~~~~~g~ev~~~dL 38 (192)
T 3f2v_A 2 PKTLIILAH--PN--ISQ-STVHKHWSDAVRQHTDRFTVHEL 38 (192)
T ss_dssp CCEEEEECC--TT--GGG-CSHHHHHHHHHTTCTTTEEEEEH
T ss_pred CEEEEEEeC--CC--ccH-HHHHHHHHHHHHhCCCeEEEEEc
Confidence 799999875 53 222 35667788888888999998854
No 333
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2
Probab=22.35 E-value=80 Score=29.49 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=19.7
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++..+
T Consensus 23 sggiG---~~~a~~l~~~G~~V~~~~r~ 47 (265)
T 1h5q_A 23 NRGIG---LAFTRAVAAAGANVAVIYRS 47 (265)
T ss_dssp TSHHH---HHHHHHHHHTTEEEEEEESS
T ss_pred CchHH---HHHHHHHHHCCCeEEEEeCc
Confidence 46666 45889999999999988754
No 334
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=22.31 E-value=55 Score=34.21 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=24.4
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||.+|+.- -+| ..++..|++.||+|.++-..
T Consensus 2 ~mkI~VIG~G--------~vG---~~lA~~La~~G~~V~~~D~~ 34 (450)
T 3gg2_A 2 SLDIAVVGIG--------YVG---LVSATCFAELGANVRCIDTD 34 (450)
T ss_dssp CCEEEEECCS--------HHH---HHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECcC--------HHH---HHHHHHHHhcCCEEEEEECC
Confidence 3899999853 222 23888999999999988654
No 335
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=22.28 E-value=75 Score=31.21 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=23.8
Q ss_pred cCCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 81 ~~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
....|||++|+. |.+|. .++..|++.||+|+++ .+
T Consensus 16 ~~~~~kI~IiGa--------Ga~G~---~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 16 YFQGMKVAIMGA--------GAVGC---YYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp ----CEEEEESC--------SHHHH---HHHHHHHHTTCEEEEE-CC
T ss_pred hccCCcEEEECc--------CHHHH---HHHHHHHHCCCeEEEE-Ec
Confidence 345799999984 44443 2677888999999999 54
No 336
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=22.20 E-value=5.6e+02 Score=26.07 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=34.1
Q ss_pred HHHHHHHhccEEEEcCCCC----C--CcHHHHHHHHcCCcEEEcC--CcCcccccc
Q 007873 469 LAHMIIAGADFILIPSRFE----P--CGLIQLHAMRYGTVPIVAS--TGGLVDTVE 516 (586)
Q Consensus 469 ~~~~~l~~aDi~l~PS~~E----~--~gl~~lEAma~G~PvI~s~--~gg~~e~v~ 516 (586)
.+.+.+..||+++...... + +.--.++.|.-|..+|-.. .||..|+.+
T Consensus 268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~ 323 (405)
T 4dio_A 268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAE 323 (405)
T ss_dssp HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCC
T ss_pred HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccC
Confidence 4567889999998754321 1 4556888888898887665 688877643
No 337
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.05 E-value=1.3e+02 Score=24.72 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=6.1
Q ss_pred cEEEEEecCc
Q 007873 403 PVIGFIGRLE 412 (586)
Q Consensus 403 ~~i~~iGrl~ 412 (586)
..|++.|.+.
T Consensus 36 ~~~v~TG~l~ 45 (109)
T 2k6g_A 36 LIFVITGVLE 45 (109)
T ss_dssp CEEEEESBCS
T ss_pred CEEEEeeeCC
Confidence 4566666664
No 338
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=22.02 E-value=2.7e+02 Score=27.76 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCeEEEEEeCCC----hhhHHHHHHHHHHCCCceEE
Q 007873 386 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARG 461 (586)
Q Consensus 386 ~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v~lvIvG~g~----~~~~~~l~~l~~~~~~~v~~ 461 (586)
+--.+++++|-- +...|.|+|-+ ..=..-++.++..+ .+++.+++... +...+.+++.+++.+.++..
T Consensus 166 Dl~TI~E~~G~l---~glkva~vGD~--~nva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~ 237 (340)
T 4ep1_A 166 DLMTIYEETNTF---KGIKLAYVGDG--NNVCHSLLLASAKV---GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI 237 (340)
T ss_dssp HHHHHHHHHSCC---TTCEEEEESCC--CHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHhCCC---CCCEEEEECCC--chhHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE
Confidence 344567777732 34689999987 22245577777777 68999999743 23445555555666654543
Q ss_pred EeccChHHHHHHHHhccEEEEcCC
Q 007873 462 VAKFNIPLAHMIIAGADFILIPSR 485 (586)
Q Consensus 462 ~~~~~~~~~~~~l~~aDi~l~PS~ 485 (586)
. + .+.+.+..||++.....
T Consensus 238 ~---~--d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 238 L---H--NPELAVNEADFIYTDVW 256 (340)
T ss_dssp E---S--CHHHHHTTCSEEEECCC
T ss_pred E---C--CHHHHhCCCCEEEecCc
Confidence 2 1 23458899999887554
No 339
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=21.96 E-value=70 Score=27.19 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=28.3
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEE
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt 125 (586)
|||+++-. +.+|.+..+...+++.|.+.|++|.++-
T Consensus 2 ~ki~I~Y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISG-----STLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECC-----TTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEE-----CCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 46666532 2379999999999999999999998773
No 340
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=21.73 E-value=71 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=19.5
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++..+
T Consensus 16 s~gIG---~~ia~~l~~~G~~V~~~~r~ 40 (241)
T 1dhr_A 16 RGALG---SRCVQAFRARNWWVASIDVV 40 (241)
T ss_dssp TSHHH---HHHHHHHHTTTCEEEEEESS
T ss_pred CcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 46666 45889999999999888654
No 341
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=21.58 E-value=68 Score=32.35 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=26.4
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
|..++|++|+.- .+|+. +|..|+++|++|+|+=.
T Consensus 3 ~~~~~V~IVGaG------~aGl~-----~A~~L~~~G~~v~v~E~ 36 (397)
T 2vou_A 3 PTTDRIAVVGGS------ISGLT-----AALMLRDAGVDVDVYER 36 (397)
T ss_dssp CCCSEEEEECCS------HHHHH-----HHHHHHHTTCEEEEECS
T ss_pred CCCCcEEEECCC------HHHHH-----HHHHHHhCCCCEEEEec
Confidence 456799999863 25655 78889999999999954
No 342
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=21.57 E-value=1e+02 Score=28.65 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=27.5
Q ss_pred ceEEEEeccccCcc--ccchHHH-HhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWS--KTGGLGD-VLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~--~~GG~~~-~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|||++|... |.. ..++... .+..+.+.+.+.||+|.++-..
T Consensus 26 ~kiLiI~gs--p~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 26 SNVLIINAM--KEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp CCEEEEECC--CCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cceEEEEeC--CCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 689999864 431 1244443 4455677777899999998654
No 343
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=21.49 E-value=97 Score=29.01 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=27.8
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||++.|... -+ .-|-.+...+|+.+|+++|++|.++=..
T Consensus 2 ~~~I~v~s~-kg---GvGKTt~a~~LA~~la~~g~~VlliD~D 40 (263)
T 1hyq_A 2 VRTITVASG-KG---GTGKTTITANLGVALAQLGHDVTIVDAD 40 (263)
T ss_dssp CEEEEEEES-SS---CSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECC-CC---CCCHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 355555542 11 2356678899999999999999999654
No 344
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.46 E-value=1.5e+02 Score=25.92 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=42.6
Q ss_pred cccCHH--HHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEE
Q 007873 413 EQKGSD--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 482 (586)
Q Consensus 413 ~~KG~d--~Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~ 482 (586)
.+|+.| +.++++......+.-+++-|+++ +...++.+.++++-++...+ +.......+.+.||-++.
T Consensus 90 ~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~D--F~plv~~lr~~~G~~V~v~g-~~~~~s~~L~~~ad~fi~ 158 (165)
T 2qip_A 90 AKGDWDVGITLDAIEIAPDVDRVILVSGDGD--FSLLVERIQQRYNKKVTVYG-VPRLTSQTLIDCADNFVA 158 (165)
T ss_dssp CSCCCHHHHHHHHHHHGGGCSEEEEECCCGG--GHHHHHHHHHHHCCEEEEEE-CGGGSCHHHHHHSSEEEE
T ss_pred cCCCccHHHHHHHHHhhccCCEEEEEECChh--HHHHHHHHHHHcCcEEEEEe-CCCcChHHHHHhCCEEEe
Confidence 466766 45677766533566666666665 88888888776565565444 322233468899998774
No 345
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=21.46 E-value=63 Score=32.66 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
++.++|++|+.- ..|+. +|..|+++|++|.|+=.
T Consensus 21 ~~~~dV~IVGaG------~aGl~-----~A~~La~~G~~V~v~E~ 54 (407)
T 3rp8_A 21 QGHMKAIVIGAG------IGGLS-----AAVALKQSGIDCDVYEA 54 (407)
T ss_dssp --CCEEEEECCS------HHHHH-----HHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCC------HHHHH-----HHHHHHhCCCCEEEEeC
Confidence 346899999863 24555 78899999999999943
No 346
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=21.39 E-value=58 Score=30.89 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.6
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.||+| ..+++.|+++|++|.++...
T Consensus 36 s~gIG---~aia~~l~~~G~~V~~~~r~ 60 (260)
T 3gem_A 36 SQRVG---LHCALRLLEHGHRVIISYRT 60 (260)
T ss_dssp TSHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 45665 46889999999999988754
No 347
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=21.31 E-value=3.2e+02 Score=27.47 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=66.3
Q ss_pred CeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcc
Q 007873 349 GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI 428 (586)
Q Consensus 349 ~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~ 428 (586)
.+-|| ||.+ ..++|... ..+--.+++..|-- +...|.|+|-. ...=..-++.++..+
T Consensus 144 ~vPVI-Na~~-~~~HPtQa----------------LaDl~Ti~E~~g~l---~gl~va~vGD~-~~rva~Sl~~~~~~l- 200 (359)
T 2w37_A 144 GVPVW-NGLT-DEWHPTQM----------------LADFMTVKENFGKL---QGLTLTFMGDG-RNNVANSLLVTGAIL- 200 (359)
T ss_dssp SSCEE-EEEC-SSCCHHHH----------------HHHHHHHHHHHSCC---TTCEEEEESCT-TSHHHHHHHHHHHHH-
T ss_pred CCCEE-cCCC-CCCCccHH----------------HHHHHHHHHHhCCc---CCeEEEEECCC-ccchHHHHHHHHHHc-
Confidence 34444 6776 67777531 22344567777732 33689999987 233355677777777
Q ss_pred cCCeEEEEEeCCC----hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCC
Q 007873 429 KENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (586)
Q Consensus 429 ~~~v~lvIvG~g~----~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~ 485 (586)
.+++.+++... +.+.+.+++.+++.+.++... ..+.+.+..||++.....
T Consensus 201 --G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~-----~d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 201 --GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVIT-----DDLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp --TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECCS
T ss_pred --CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----eCHHHHhcCCCEEEEccc
Confidence 78999999742 234455566666666545433 223457899999887654
No 348
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=21.29 E-value=1e+02 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=28.3
Q ss_pred CceEEEEeccccCccccchHHHHhh--hhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLG--GLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~--~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||+.|+. +| +|-.-+|+. .|-++-.++||++.|=|..
T Consensus 2 ~~kivaVTa--Cp---tGiAhTymAaeaL~~aA~~~G~~ikVEtqG 42 (106)
T 2r48_A 2 NAKLLAITS--CP---NGIAHTYMAAENLQKAADRLGVSIKVETQG 42 (106)
T ss_dssp CCEEEEEEE--CS---SCSHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred CceEEEEec--CC---CcHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 589999997 36 466655553 3666667889999997754
No 349
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=21.10 E-value=69 Score=31.24 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.4
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEe
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAP 126 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~ 126 (586)
+|++| ..|++.|.++||+|.++..
T Consensus 10 tG~iG---~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 10 CGFLG---SNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CchhH---HHHHHHHHhCCCEEEEEeC
Confidence 35555 4578889999999999864
No 350
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=21.04 E-value=48 Score=28.44 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=25.5
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|...+|++++. |.+-..+++.|.+.||+|+++...
T Consensus 1 ~~~~~vlI~G~-----------G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 1 HRKDHFIVCGH-----------SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCCSCEEEECC-----------SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCcEEEECC-----------CHHHHHHHHHHHHCCCCEEEEECC
Confidence 34567777752 234466889999999999999865
No 351
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=20.95 E-value=2.4e+02 Score=27.46 Aligned_cols=79 Identities=4% Similarity=0.109 Sum_probs=49.8
Q ss_pred HHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCCCCCcHHHHHHH
Q 007873 420 LAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAM 497 (586)
Q Consensus 420 Ll~A~~~l~~~~v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~E~~gl~~lEAm 497 (586)
.++++..+...+++++-+-+.. .+..++++++++.. . .+. ...++++ ..|++++.+-...-.-...+|+
T Consensus 17 ~~~~l~~~~~~~~~l~av~d~~---~~~a~~~a~~~~~~-~---~~~--~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al 87 (334)
T 3ohs_X 17 FTAVLQTLPRSEHQVVAVAARD---LSRAKEFAQKHDIP-K---AYG--SYEELAKDPNVEVAYVGTQHPQHKAAVMLCL 87 (334)
T ss_dssp HHHHHTTSCTTTEEEEEEECSS---HHHHHHHHHHHTCS-C---EES--SHHHHHHCTTCCEEEECCCGGGHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEEEEcCC---HHHHHHHHHHcCCC-c---ccC--CHHHHhcCCCCCEEEECCCcHHHHHHHHHHH
Confidence 5666666543457887666654 33455666665521 1 122 2335666 6899998876554455577899
Q ss_pred HcCCcEEEcC
Q 007873 498 RYGTVPIVAS 507 (586)
Q Consensus 498 a~G~PvI~s~ 507 (586)
..|++|+|-.
T Consensus 88 ~~GkhVl~EK 97 (334)
T 3ohs_X 88 AAGKAVLCEK 97 (334)
T ss_dssp HTTCEEEEES
T ss_pred hcCCEEEEEC
Confidence 9999999865
No 352
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=20.91 E-value=37 Score=31.99 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=23.9
Q ss_pred ceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 85 MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
||+++|+.- .||+| ..+++.|+++|++|.++..+
T Consensus 1 Mk~vlVTGa------s~gIG---~~ia~~l~~~G~~V~~~~r~ 34 (254)
T 1zmt_A 1 MSTAIVTNV------KHFGG---MGSALRLSEAGHTVACHDES 34 (254)
T ss_dssp -CEEEESST------TSTTH---HHHHHHHHHTTCEEEECCGG
T ss_pred CeEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 676777642 46665 45889999999998887544
No 353
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=20.86 E-value=71 Score=31.88 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=19.3
Q ss_pred cchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 100 ~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
+|++| ..|++.|.++||+|.++...
T Consensus 37 tG~IG---~~l~~~L~~~g~~V~~~~r~ 61 (381)
T 1n7h_A 37 TGQDG---SYLTEFLLGKGYEVHGLIRR 61 (381)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CchHH---HHHHHHHHHCCCEEEEEecC
Confidence 35555 45788899999999998754
No 354
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=20.84 E-value=87 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=23.6
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|+. |.+| ..++..|++.||+|.++..+
T Consensus 28 ~~~I~iiG~--------G~~G---~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 28 APKVGILGS--------GDFA---RSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp -CCEEEECC--------SHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEcc--------CHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 589999872 4444 34678888999999887644
No 355
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=20.80 E-value=71 Score=30.96 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=18.5
Q ss_pred chHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 101 GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|++| ..|++.|.++||+|.++...
T Consensus 11 G~iG---~~l~~~L~~~g~~V~~~~r~ 34 (330)
T 2c20_A 11 GYIG---SHAVKKLVDEGLSVVVVDNL 34 (330)
T ss_dssp SHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred cHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 5544 55888899999999998754
No 356
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=20.76 E-value=63 Score=31.32 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhC-----C-CeEEEEEe
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN-----G-HRVMTIAP 126 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~-----G-h~V~vvt~ 126 (586)
.+|||+||+. |.+|. -++..|++. | |+|+++..
T Consensus 7 ~~m~I~iiG~--------G~mG~---~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 7 QPIKIAVFGL--------GGVGG---YYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CCEEEEEECC--------SHHHH---HHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCEEEEECc--------CHHHH---HHHHHHHhCccccCCCCCEEEEEc
Confidence 3589999984 44443 356677777 9 99998864
No 357
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=20.70 E-value=50 Score=32.06 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=24.8
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|+. |++|. -++..|++.||+|+++...
T Consensus 2 ~mkI~iiGa--------Ga~G~---~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGP--------GAVGT---TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp -CCEEEECC--------SHHHH---HHHHHHHHHCTTCEEEESS
T ss_pred CcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEec
Confidence 489999984 55553 3677788889999999865
No 358
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=20.65 E-value=48 Score=33.31 Aligned_cols=44 Identities=14% Similarity=-0.177 Sum_probs=27.5
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|++|||+++..-..+. ..-.-.....++++|.+.||+|..+...
T Consensus 1 m~~~~v~vl~gg~s~E--~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (364)
T 2i87_A 1 MTKENICIVFGGKSAE--HEVSILTAQNVLNAIDKDKYHVDIIYIT 44 (364)
T ss_dssp --CEEEEEEEECSSSC--HHHHHHHHHHHHHTSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEECCCCcc--chhHHHHHHHHHHHHhhcCCEEEEEEEc
Confidence 4679999997532221 1101123456889999999999999754
No 359
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.64 E-value=3e+02 Score=21.26 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=62.9
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPIV 505 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI~ 505 (586)
.+++|+.+.+ .....++++....+..+. ...-+.+++...+. ..|++++-... +.-|..+++.+. ..+|+|.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~l~~~g~~vv-~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (120)
T 1tmy_A 3 KRVLIVDDAA-FMRMMLKDIITKAGYEVA-GEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIV 80 (120)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEE
T ss_pred ceEEEEcCcH-HHHHHHHHHHhhcCcEEE-EEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEE
Confidence 3566676544 344555555555443322 12224444444443 35888765443 335666776664 4677765
Q ss_pred cCC-cC---cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHH
Q 007873 506 AST-GG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 550 (586)
Q Consensus 506 s~~-gg---~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll 550 (586)
-.. .. ..+....|..+++. .|.++++|.+.+.+++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIV----------KPFQPSRVVEALNKVS 119 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHhCcceeEe----------CCCCHHHHHHHHHHHh
Confidence 432 22 23445668889998 9999999999988764
No 360
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=20.60 E-value=2.2e+02 Score=26.17 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCC--CeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~G--h~V~vvt~~ 127 (586)
|.++||+++.+ |.|..+..|..++.+.+ ++|..|...
T Consensus 5 m~~~ri~vl~S---------G~gsnl~all~~~~~~~l~~~I~~Visn 43 (209)
T 4ds3_A 5 MKRNRVVIFIS---------GGGSNMEALIRAAQAPGFPAEIVAVFSD 43 (209)
T ss_dssp -CCEEEEEEES---------SCCHHHHHHHHHHTSTTCSEEEEEEEES
T ss_pred CCCccEEEEEE---------CCcHHHHHHHHHHHcCCCCcEEEEEEEC
Confidence 66789988764 22345677777776543 577766654
No 361
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=20.57 E-value=80 Score=31.28 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=17.7
Q ss_pred hhhHHHHHhCCCeEEEEEec
Q 007873 108 GGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 108 ~~L~~~L~~~Gh~V~vvt~~ 127 (586)
..+|+++.++|++|++++..
T Consensus 69 ~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 69 ATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp HHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHCCCEEEEEecC
Confidence 45899999999999999875
No 362
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.47 E-value=49 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=24.3
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
..+|++++. |.+-..+++.|.+.||+|.++...
T Consensus 7 ~~~viIiG~-----------G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGY-----------GRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECC-----------SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECc-----------CHHHHHHHHHHHHCCCCEEEEECC
Confidence 356777763 234456889999999999999865
No 363
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=20.45 E-value=69 Score=29.99 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=24.2
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHh-CCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~-~Gh~V~vvt~~ 127 (586)
.+|.++|+.- .||+| ..+++.|++ +|++|.++...
T Consensus 3 ~~k~vlITGa------sggIG---~~~a~~L~~~~g~~V~~~~r~ 38 (276)
T 1wma_A 3 GIHVALVTGG------NKGIG---LAIVRDLCRLFSGDVVLTARD 38 (276)
T ss_dssp CCCEEEESSC------SSHHH---HHHHHHHHHHSSSEEEEEESS
T ss_pred CCCEEEEeCC------CcHHH---HHHHHHHHHhcCCeEEEEeCC
Confidence 3455556532 46666 457889999 99999888654
No 364
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=20.45 E-value=1.5e+02 Score=29.27 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=32.5
Q ss_pred HHHHHHHHhccEEEEc--CCCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 468 PLAHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 468 ~~~~~~l~~aDi~l~P--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
..+.++++.||++++. ...|. ++-..+..|--|.-+|-+..|++.+
T Consensus 185 ~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 235 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQ 235 (315)
T ss_dssp HHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred CCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhh
Confidence 4567899999998754 33233 4555777777788888888888665
No 365
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=20.44 E-value=1e+02 Score=29.16 Aligned_cols=45 Identities=16% Similarity=0.010 Sum_probs=27.8
Q ss_pred CceEEEEeccccC-c----cccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 84 GLNILFVGTEVAP-W----SKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 84 ~MkIl~v~~~~~P-~----~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
.+||++|.+.+.- . .++|=-..=+..-...|.+.|++|+++++..
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3589999776421 1 0122222233445567889999999999873
No 366
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=20.43 E-value=1.2e+02 Score=29.28 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=26.8
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
+++||+|++ +|....= ..+.+...++++|++|.+++-..
T Consensus 7 ~~rvLvv~a--HPDDe~l----g~GGtia~~~~~G~~V~vv~~T~ 45 (273)
T 3dff_A 7 ATRLLAISP--HLDDAVL----SFGAGLAQAAQDGANVLVYTVFA 45 (273)
T ss_dssp -CEEEEEES--STTHHHH----HHHHHHHHHHHTTCEEEEEETTC
T ss_pred CCCEEEEEe--CCChHHH----hHHHHHHHHHHCCCcEEEEEEeC
Confidence 689999997 4753322 23445566677999999998764
No 367
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=20.42 E-value=47 Score=32.03 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=24.6
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|+|++++. +|++| ..++++|.++||+|.+++..
T Consensus 4 ~~~ilVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 4 KSRVLIVGG-------TGYIG---KRIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp CCCEEEEST-------TSTTH---HHHHHHHHHTTCCEEEECCS
T ss_pred CCEEEEEcC-------CcHHH---HHHHHHHHhCCCcEEEEECC
Confidence 467777664 35555 34778888999999988764
No 368
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=20.41 E-value=66 Score=31.45 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=23.5
Q ss_pred CceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 84 ~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
.|||++|+. |.+|.. ++..|++.||+|+++...
T Consensus 2 ~mkI~IiGa--------GaiG~~---~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 2 SLRIAIVGA--------GALGLY---YGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp --CEEEECC--------STTHHH---HHHHHHHTSCCEEEECST
T ss_pred CCEEEEECc--------CHHHHH---HHHHHHHCCCeEEEEEcC
Confidence 389999984 444432 677888899999999864
No 369
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=20.39 E-value=3.3e+02 Score=26.99 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=66.4
Q ss_pred CeeEecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHH-hCCCCCCCCcEEEEEecCccccCHHHHHHHHhhc
Q 007873 349 GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE-VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHF 427 (586)
Q Consensus 349 ~i~vI~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l 427 (586)
.+-|| ||.+ ..++|... ..+--.+++. .|-+. +...|.|+|-. ...=..-++.++..+
T Consensus 121 ~vPVI-Na~~-~~~HPtQ~----------------LaDl~Ti~e~~~g~~l--~gl~ia~vGD~-~~~va~Sl~~~~~~~ 179 (333)
T 1duv_G 121 SVPVW-NGLT-NEFHPTQL----------------LADLLTMQEHLPGKAF--NEMTLVYAGDA-RNNMGNSMLEAAALT 179 (333)
T ss_dssp SSCEE-ESCC-SSCCHHHH----------------HHHHHHHHHHSTTCCG--GGCEEEEESCT-TSHHHHHHHHHHHHH
T ss_pred CCCeE-cCCC-CCCCchHH----------------HHHHHHHHHHhcCCCC--CCcEEEEECCC-ccchHHHHHHHHHHc
Confidence 34444 6776 77777531 2234456776 66111 23689999986 233345677777777
Q ss_pred ccCCeEEEEEeCCC----hhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCC
Q 007873 428 IKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 485 (586)
Q Consensus 428 ~~~~v~lvIvG~g~----~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~ 485 (586)
.+++.+++... +...+.+++.+++.+.++... ..+.+.+.+||++.....
T Consensus 180 ---G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~-----~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 180 ---GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLT-----EDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp ---CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEE-----SCHHHHHTTCSEEEECCS
T ss_pred ---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE-----ECHHHHhCCCCEEEeCCc
Confidence 68999999732 234455666666777544333 223457899999987655
No 370
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=20.24 E-value=1e+02 Score=29.81 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=31.1
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
++.|++.|+.. -| .-|-.....+||..|++.|.+|.+|-..
T Consensus 90 ~~~kvI~vts~-kg---G~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 90 AQNNVLMMTGV-SP---SIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp TTCCEEEEEES-SS---SSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCCeEEEEECC-CC---CCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 35677777654 22 3466778899999999999999999654
No 371
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=20.21 E-value=1.4e+02 Score=27.04 Aligned_cols=109 Identities=14% Similarity=0.188 Sum_probs=65.7
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHCCCceEEEe-ccChHHHHHHHH--hccEEEEcCCC-CCCcHHHHHHHH---cCCcEE
Q 007873 432 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVA-KFNIPLAHMIIA--GADFILIPSRF-EPCGLIQLHAMR---YGTVPI 504 (586)
Q Consensus 432 v~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~-~~~~~~~~~~l~--~aDi~l~PS~~-E~~gl~~lEAma---~G~PvI 504 (586)
.+++|+.+.+ .....+..+....++ ..... .-+..++...+. ..|++++=... +.-|+.+++.+. ..+|+|
T Consensus 2 ~~ILivdd~~-~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHE-VVRRGLVDLLGADPE-LDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCH-HHHHHHHHHHHTCTT-EEEEEEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCH-HHHHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 3566676654 344555555544432 32222 235555544443 36888875443 345777776664 378887
Q ss_pred EcCCcC----cccccccCcceEEEccccccccCCCCCCHHHHHHHHHHHHHh
Q 007873 505 VASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 552 (586)
Q Consensus 505 ~s~~gg----~~e~v~~g~~G~~~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 552 (586)
.-.... ..+.+..|..|++. .|.++++|.++|..++..
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~----------Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVV----------KDIKGMELARAVKDVGAG 121 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEE----------CCCCHHHHHHHHHHHHcC
Confidence 765333 23344567788876 888999999999998864
No 372
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=20.20 E-value=2.8e+02 Score=28.04 Aligned_cols=44 Identities=34% Similarity=0.404 Sum_probs=31.9
Q ss_pred HHHHHHhccEEEE--cCCCC----C---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILI--PSRFE----P---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~--PS~~E----~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++ |...+ . ++-..++.|.-|..+|-+..|++.+
T Consensus 161 l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd 213 (380)
T 2o4c_A 161 LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVD 213 (380)
T ss_dssp HHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBC
T ss_pred HHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccC
Confidence 4568999999876 43333 3 4445788888898888888888665
No 373
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=20.12 E-value=2.5e+02 Score=27.55 Aligned_cols=112 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred ecCCcccCCcCCCCccccccccCccccccccHHHHHHHHHHhCCCCCCCCcEEEEEecCccccCHHHHHHHHhhcccCCe
Q 007873 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENV 432 (586)
Q Consensus 353 I~ngvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl~~~~~~~~i~~iGrl~~~KG~d~Ll~A~~~l~~~~v 432 (586)
|.||.|...++|. .-..+--.+++++|-- +...|.|+|-+....=..-++.++..+ +.+
T Consensus 121 VINag~g~~~HPt----------------Q~LaDl~Ti~e~~g~l---~glkva~vGD~~~~rva~Sl~~~~~~~--~G~ 179 (306)
T 4ekn_B 121 IINAGDGSNQHPT----------------QTLLDLYTIMREIGRI---DGIKIAFVGDLKYGRTVHSLVYALSLF--ENV 179 (306)
T ss_dssp EEESCSSSSCCHH----------------HHHHHHHHHHHHHSCS---TTCEEEEESCTTTCHHHHHHHHHHHTS--SSC
T ss_pred EEeCCCCCCcCcH----------------HHHHHHHHHHHHhCCc---CCCEEEEEcCCCCCcHHHHHHHHHHhc--CCC
Q ss_pred EEEEEeCCChhhHHHHHHHHHHCCCceEEEeccChHHHHHHHHhccEEEEcCCC-CCCc
Q 007873 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-EPCG 490 (586)
Q Consensus 433 ~lvIvG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDi~l~PS~~-E~~g 490 (586)
++.+++...-...+.+.+.+.+.+..+...-.... .+..||++...... |.++
T Consensus 180 ~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~e-----av~~aDvvy~~~~q~er~~ 233 (306)
T 4ekn_B 180 EMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDD-----LDDDIDVLYVTRIQKERFP 233 (306)
T ss_dssp EEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGG-----CCTTCSEEEECCCCGGGCC
T ss_pred EEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHH-----HhcCCCEEEeCCcccccCC
No 374
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=20.08 E-value=2.9e+02 Score=27.54 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=33.2
Q ss_pred HHHHHHhccEEEEcC--CCCC---CcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILIPS--RFEP---CGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS--~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++-. ..|. ++-..+..|--|.-+|-+..|++.+
T Consensus 194 l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 242 (343)
T 2yq5_A 194 FDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVD 242 (343)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC
T ss_pred HHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhh
Confidence 456899999987643 3233 5566888888999999999888665
No 375
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=20.06 E-value=2.3e+02 Score=27.96 Aligned_cols=44 Identities=23% Similarity=0.156 Sum_probs=31.5
Q ss_pred HHHHHHhccEEEEcCC--CC---CCcHHHHHHHHcCCcEEEcCCcCccc
Q 007873 470 AHMIIAGADFILIPSR--FE---PCGLIQLHAMRYGTVPIVASTGGLVD 513 (586)
Q Consensus 470 ~~~~l~~aDi~l~PS~--~E---~~gl~~lEAma~G~PvI~s~~gg~~e 513 (586)
+.++++.||++++.-- .+ -++-..++.|.-|.-+|-+..|++.+
T Consensus 193 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd 241 (333)
T 1j4a_A 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVD 241 (333)
T ss_dssp HHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccC
Confidence 4568899999987433 22 24456788888888888888887655
No 376
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=20.06 E-value=1.3e+02 Score=28.81 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=27.7
Q ss_pred CCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEecC
Q 007873 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (586)
Q Consensus 83 ~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~~ 128 (586)
..|+||+|++ +|.... ...+.+...++++|++|.+++-..
T Consensus 6 ~~~rvLvv~a--HPDDe~----l~~GGtia~~~~~G~~V~vv~~T~ 45 (270)
T 3dfi_A 6 DRTRILAISP--HLDDAV----LSVGASLAQAEQDGGKVTVFTVFA 45 (270)
T ss_dssp CCSEEEEEES--STTHHH----HHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCEEEEEe--CCchHH----HhhHHHHHHHHhCCCeEEEEEEeC
Confidence 3689999998 475332 223445556668999999998764
No 377
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=20.04 E-value=1.5e+02 Score=25.90 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=27.6
Q ss_pred CCCceEEEEeccccCccccchHHHHhhhhHHHHHhCCCeEEEEEec
Q 007873 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (586)
Q Consensus 82 ~~~MkIl~v~~~~~P~~~~GG~~~~~~~L~~~L~~~Gh~V~vvt~~ 127 (586)
|+.|||++=+. .+|.. .=..|.+.|.++||+|.=+.+.
T Consensus 5 m~~mkI~igsD-------haG~~-lK~~i~~~L~~~G~eV~D~G~~ 42 (148)
T 4em8_A 5 MVVKRVFLSSD-------HAGVE-LRLFLSAYLRDLGCEVFDCGCD 42 (148)
T ss_dssp CSCSEEEEEEC-------GGGHH-HHHHHHHHHHHTTCEEEECCCC
T ss_pred ceeeEEEEEEC-------chhHH-HHHHHHHHHHHCCCEEEEeCCC
Confidence 55588776654 46665 4556888899999999888654
Done!