BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007876
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 204 NLGRL---FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKA 257
++G+L + C +L+ L+ K + W F KPVD LGL DY+ IIKHPMDL TVK
Sbjct: 1 SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKR 60
Query: 258 RLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
++ Y+ +EFA DVR+ FSN YNP DV MA +L +FE + K+
Sbjct: 61 KMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 112
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ L+ K + W F KPVD LGL DY+ IIKHPMDL TVK ++ Y+
Sbjct: 7 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 66
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
+EFA DVR+ FSN YNP DV MA +L +FE + K+
Sbjct: 67 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 110
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ L+ K + W F KPVD LGL DY+ IIKHPMDL TVK ++ Y+
Sbjct: 3 LKHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
+EFA DVR+ FSN YNP DV MA +L +FE + K+
Sbjct: 63 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 106
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ + K + W F KPVDV+ LGL DY IIKHPMD+ T+K++L Y+
Sbjct: 24 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 83
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312
+EF DVR+ FSN YNP +V MA +L +FE + K+ E
Sbjct: 84 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ + K + W F KPVDV+ LGL DY IIKHPMD+ T+K++L Y+
Sbjct: 22 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 81
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312
+EF DVR+ FSN YNP +V MA +L +FE + K+ E
Sbjct: 82 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 128
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%)
Query: 213 RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE 272
R +L+ L KH+F W F +PVD L L DYY IIK PMD+GT+K RL N Y +E +
Sbjct: 27 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 86
Query: 273 DVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
D F+N +YN G D+ +MAE L K+F
Sbjct: 87 DFNTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%)
Query: 213 RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE 272
R +L+ L KH+F W F +PVD L L DYY IIK PMD+GT+K RL N Y +E +
Sbjct: 27 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 86
Query: 273 DVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
D F+N +YN G D+ +MAE L K+F
Sbjct: 87 DFNTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%)
Query: 213 RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE 272
R +L+ L KH+F W F +PVD L L DYY IIK PMD+GT+K RL N Y +E +
Sbjct: 31 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 90
Query: 273 DVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
D F+N +YN G D+ +MAE L K+F
Sbjct: 91 DFNTMFTNCYIYNKPGDDIVLMAEALEKLF 120
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%)
Query: 213 RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE 272
R +L+ L KH+F W F +PVD L L DYY IIK PMD+GT+K RL N Y +E +
Sbjct: 47 RVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQ 106
Query: 273 DVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
D F+N +YN G D+ +MAE L K+F
Sbjct: 107 DFNTMFTNCYIYNKPGDDIVLMAEALEKLF 136
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 198 ELVSYKNLGRLFQSC----RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLG 253
E ++ K GRL R +L+ L KH F W F +PVD L L DYYTIIK PMDL
Sbjct: 1 EYINTKKSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLN 60
Query: 254 TVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
T+K RL Y+ E ED FSN LYN G D+ +MA+ L K+F
Sbjct: 61 TIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLF 109
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 206 GRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSK 261
GRL + L L+ L KH F W F +PVD L L DYYTIIK+PMDL T+K RL
Sbjct: 8 GRLTNQLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLEN 67
Query: 262 NLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
Y E ED FSN LYN G D+ +MA+ L K+F
Sbjct: 68 KYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLF 108
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ + K + W F KPVDV+ LGL DY IIKHPMD+ T+K++L Y+
Sbjct: 3 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 62
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
+EF DVR+ FSN YNP +V MA +L +FE + K+
Sbjct: 63 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 106
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 195 KGNELVSYKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPM 250
+G+ + + K GR+ + L ++ L KH+F W F +PVD LGL DY+ IIK PM
Sbjct: 16 RGSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPM 75
Query: 251 DLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
D+GT+K RL N Y E +D F+N +YN D+ +MA+ L KIF
Sbjct: 76 DMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 127
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ + K + W F KPVDV+ LGL DY IIKHPMD+ T+K++L Y+
Sbjct: 11 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYR 70
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312
+EF DVR+ FSN YNP +V MA +L +FE + K+ E
Sbjct: 71 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 195 KGNELVSYKNLGRLFQSCRNL----LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPM 250
+G+ + + K GR+ + L ++ L KH+F W F +PVD LGL DY+ IIK PM
Sbjct: 16 RGSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPM 75
Query: 251 DLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
D+GT+K RL N Y E +D F+N +YN D+ +MA+ L KIF
Sbjct: 76 DMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 127
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ ++ K + W F PVD LGL +YY ++K+PMDLGT+K ++ YK
Sbjct: 16 LKHCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYK 75
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312
EFA DVR+ F N YNP +V MA L +FE + KI E
Sbjct: 76 DAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDE 122
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%)
Query: 215 LLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDV 274
+++ L KH+F W F +PVD L L DY+ IIK+PMD+GT+K RL N Y + E +D
Sbjct: 25 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 84
Query: 275 RITFSNAMLYNPKGQDVHIMAEELSKIF 302
F+N +YN D+ +MA+ L KIF
Sbjct: 85 NTMFTNCYIYNKPTDDIVLMAQALEKIF 112
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%)
Query: 215 LLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDV 274
+++ L KH+F W F +PVD L L DY+ IIK+PMD+GT+K RL N Y + E +D
Sbjct: 29 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 88
Query: 275 RITFSNAMLYNPKGQDVHIMAEELSKIF 302
F+N +YN D+ +MA+ L KIF
Sbjct: 89 NTMFTNCYIYNKPTDDIVLMAQALEKIF 116
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%)
Query: 215 LLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDV 274
+++ L KH+F W F +PVD L L DY+ IIK+PMD+GT+K RL N Y + E +D
Sbjct: 27 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 86
Query: 275 RITFSNAMLYNPKGQDVHIMAEELSKIF 302
F+N +YN D+ +MA+ L KIF
Sbjct: 87 NTMFTNCYIYNKPTDDIVLMAQALEKIF 114
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 209 FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK 265
+ C +L+ K + W F KPVDV+ LGL DY IIKHP D T+K++L Y+
Sbjct: 9 LKCCSGILKEXFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYR 68
Query: 266 TPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKK 308
+EF DVR+ FSN YNP +V A +L +FE + K
Sbjct: 69 DAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRFAK 111
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 201 SYKNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKA 257
S L + C ++L ++ K + W F KPVD + L L DY+ IIKHPMDL TVK
Sbjct: 1 SMGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKR 60
Query: 258 RLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
++ Y + FA DVR+ FSN YNP +V MA +L +FE + K+
Sbjct: 61 KMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 112
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 205 LGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSK 261
L + C ++L ++ K + W F KPVD + L L DY+ IIKHPMDL TVK ++
Sbjct: 10 LSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDG 69
Query: 262 NLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
Y + FA DVR+ FSN YNP +V MA +L +FE + K+
Sbjct: 70 REYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 117
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 48/84 (57%)
Query: 219 LMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITF 278
L KH+F W F +PVD LGL DY+ IIK P D GT+K RL N Y E +D F
Sbjct: 24 LWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXF 83
Query: 279 SNAMLYNPKGQDVHIMAEELSKIF 302
+N +YN D+ + A+ L KIF
Sbjct: 84 TNCYIYNKPTDDIVLXAQTLEKIF 107
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 78.6 bits (192), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 48/84 (57%)
Query: 219 LMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITF 278
L KH+F W F +PVD LGL DY+ IIK P D GT+K RL N Y E +D F
Sbjct: 18 LWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXF 77
Query: 279 SNAMLYNPKGQDVHIMAEELSKIF 302
+N +YN D+ + A+ L KIF
Sbjct: 78 TNCYIYNKPTDDIVLXAQTLEKIF 101
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 228 FNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287
F +PVD + LG+ DY+ I+K+PMDL T+K +L Y+ P ++ +DV + F+NA LYN K
Sbjct: 33 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 92
Query: 288 GQDVHIMAEELSKIFE 303
V+ +L+++FE
Sbjct: 93 TSRVYKFCSKLAEVFE 108
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 228 FNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287
F +PVD + LG+ DY+ I+K PMDL T+K +L Y+ P ++ +D+ + F+NA LYN K
Sbjct: 38 FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRK 97
Query: 288 GQDVHIMAEELSKIFE 303
V+ +LS++FE
Sbjct: 98 TSRVYKYCSKLSEVFE 113
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 228 FNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287
F +PVD + LG+ DY+ I+K+PMDL T+K +L Y+ P ++ +DV + F+NA LYN K
Sbjct: 35 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 94
Query: 288 GQDVHIMAEELSKIFE 303
V+ +L+++FE
Sbjct: 95 TSRVYKFCSKLAEVFE 110
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 210 QSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPRE 269
+ C+ L+ + + + F +PVD+ + DY II PMD GTV+ L Y +P E
Sbjct: 13 KQCKELVNLIFQCEDSEPFRQPVDL--VEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLE 70
Query: 270 FAEDVRITFSNAMLYNP-KGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSKMGRK 324
F +D+R+ FSNA Y P K ++ M LS +FE+ KKI +++ K+G+K
Sbjct: 71 FCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF------KIGQK 120
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 426 MTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQQD-DEIEVDIDTFDPETLWELDR 484
M+YEEK++LS+++ +LP +KL VV II+ R P L + DEIE+D +T P TL EL+R
Sbjct: 18 MSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELER 77
Query: 485 FVTN 488
+VT+
Sbjct: 78 YVTS 81
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
++ + +L L HK W F +PVD DYY +IK PMDL T++ R+ + Y+
Sbjct: 74 YEGLKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLT 131
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311
EF D+ F N YNP + AE L F K +A
Sbjct: 132 EFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
++ + +L L HK W F +PVD DYY +IK PMDL T++ R+ + Y+
Sbjct: 74 YEGLKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLT 131
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311
EF D+ F N YNP + AE L F K +A
Sbjct: 132 EFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
++ + +L L HK W F +PVD DYY +IK PMDL T++ R+ + Y+
Sbjct: 22 YEGLKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLT 79
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311
EF D+ F N YNP + AE L F K +A
Sbjct: 80 EFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 122
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 211 SCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREF 270
+ +N+L L H W F +PV+ + + DYY IK PMDL T++ +L N Y+ +F
Sbjct: 17 AIQNILTELQNHAAAWPFLQPVNKEEVP--DYYDFIKEPMDLSTMEIKLESNKYQKMEDF 74
Query: 271 AEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
D R+ F+N +YN + + A L K F + K+I
Sbjct: 75 IYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 113
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 210 QSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKN--LYKTP 267
+ C LL L H+ F PV L + DYY IIK+PMDL T+K RL ++ +Y P
Sbjct: 23 RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 79
Query: 268 REFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSR 317
+F D R+ F N +N +V +L FE+ K + E F +
Sbjct: 80 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFPK 129
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
++ + +L L HK W F +PVD DYY +IK PMDL T++ R+ + Y+
Sbjct: 15 YEGLKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLT 72
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311
EF D+ F N YNP + AE L F K +A
Sbjct: 73 EFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 115
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
++ + +L L HK W F +PVD DYY +IK PMDL T++ R+ + Y+
Sbjct: 15 YEGLKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLT 72
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311
EF D+ F N YNP + AE L F K +A
Sbjct: 73 EFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 115
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 215 LLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDV 274
L+ L K++ G +F K VD K DYY +IK+P +K +L K Y P EF +DV
Sbjct: 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDV 88
Query: 275 RITFSNAMLYNPKGQDVHIMAEELSKIF 302
++ F N LYN V I + + F
Sbjct: 89 QLIFDNCSLYNTSNSVVAITGKNIETYF 116
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 188 KKLKSNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIK 247
++L++ + ++ ++K + C LL + + + F +PVD+ L DY II
Sbjct: 8 RRLRNRAQSYDIQAWK------KQCEELLNLIFQCEDSEPFRQPVDL--LEYPDYRDIID 59
Query: 248 HPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP-KGQDVHIMAEELSKIFEDTW 306
PMD TV+ L Y++P E +DVR+ FSN+ Y P K ++ M+ LS FE+
Sbjct: 60 TPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHI 119
Query: 307 KKIEAEY 313
+ ++Y
Sbjct: 120 SSVLSDY 126
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 212 CRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKN--LYKTPRE 269
C LL L H+ F PV L + DYY IIK+PMDL T+K RL ++ +Y P +
Sbjct: 86 CERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPED 142
Query: 270 FAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
F D R+ F N +N +V +L FE+ K +
Sbjct: 143 FVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKT 266
RLF R++ +RL K +F+KPVD++ + DY +IK PMDL TV ++ K+ Y T
Sbjct: 14 RLFL--RDVTKRLATDKRFNIFSKPVDIEEVS--DYLEVIKEPMDLSTVITKIDKHNYLT 69
Query: 267 PREFAEDVRITFSNAMLYNP 286
++F +D+ + SNA+ YNP
Sbjct: 70 AKDFLKDIDLICSNALEYNP 89
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
++ + +L L HK W F +PVD DYY +IK P DL T + R+ + Y+
Sbjct: 74 YEGLKRVLRSLQAHKXAWPFLEPVDPNDA--PDYYGVIKEPXDLATXEERVQRRYYEKLT 131
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311
EF D F N YNP + AE L F K +A
Sbjct: 132 EFVADXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 212 CRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFA 271
C +L + H+ W F PV++K + Y +IK PMD T++ +LS Y FA
Sbjct: 18 CSMILTEMETHEDAWPFLLPVNLKLV--PGYKKVIKKPMDFSTIREKLSSGQYPNLETFA 75
Query: 272 EDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTW 306
DVR+ F N +N D+ + K FE W
Sbjct: 76 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKT 266
+L+ + +++L+++ H+ W F +PV K YY +I+ PMDL T+ RL Y +
Sbjct: 15 QLYSTLKSILQQVKSHQSAWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVS 72
Query: 267 PREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
+ F D++ F+N YNP + + A L K F
Sbjct: 73 KKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFF 108
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKT 266
+L+ + +++L+++ H+ W F +PV K YY +I+ PMDL T+ RL Y +
Sbjct: 13 QLYSTLKSILQQVKSHQSAWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVS 70
Query: 267 PREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
+ F D++ F+N YNP + + A L K F
Sbjct: 71 KKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFF 106
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKT 266
+L+ + +NLL ++ H W F +PV K DYY +I+ P+DL T+ RL Y T
Sbjct: 7 QLYTTLKNLLAQIKSHPSAWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 64
Query: 267 PREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
+ F D++ +N YNP + A L K F
Sbjct: 65 RKLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 100
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 192 SNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMD 251
S + GN L RLF R++ +RL K +F+KPV DY +IK PMD
Sbjct: 3 SGSSGNTLREL----RLFL--RDVTKRLATDKRFNIFSKPV-------SDYLEVIKEPMD 49
Query: 252 LGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP 286
L TV ++ K+ Y T ++F +D+ + SNA+ YNP
Sbjct: 50 LSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 212 CRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFA 271
C +L + H+ W F PV++K + Y +IK PMD T++ +LS Y FA
Sbjct: 15 CSMILTEMETHEDAWPFLLPVNLKLV--PGYKKVIKKPMDFSTIREKLSSGQYPNLETFA 72
Query: 272 EDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTW 306
DVR+ F N +N D+ + K FE W
Sbjct: 73 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKT 266
+L+ + +NLL ++ H W F +PV K DYY +I+ P+DL T+ RL Y T
Sbjct: 3 QLYTTLKNLLAQIKSHPSAWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 60
Query: 267 PREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
+ F D++ +N YNP + A L K F
Sbjct: 61 RKLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 96
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 212 CRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSK---NLYKTPR 268
C LL L H+ F +PV + +YY IIK PMDL TVK +L K Y+ P
Sbjct: 86 CERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD 142
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAE 296
+F DVR+ F N +N + V + A+
Sbjct: 143 DFVADVRLIFKNCERFNEMMKVVQVYAD 170
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
F + +L+ + HK W F +PVD +YY IIK PMD+ +++ +L+ LY T
Sbjct: 18 FTAMYKVLDVVKAHKDSWPFLEPVDESYAP--NYYQIIKAPMDISSMEKKLNGGLYCTKE 75
Query: 269 EFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302
EF D++ F N YN + + M++ L + F
Sbjct: 76 EFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCF 109
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 213 RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE 272
RN+ RL K VF KPVD + DY T+IK PMDL +V +++ + Y T +++
Sbjct: 16 RNVTHRLAIDKRFRVFTKPVDPDEV--PDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLR 73
Query: 273 DVRITFSNAMLYNP 286
D+ + SNA+ YNP
Sbjct: 74 DIDLICSNALEYNP 87
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 217 ERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRI 276
+++M W F+ PV+ K + DYY +I +PMDL T++ +SK+ Y++ F +DV +
Sbjct: 147 QKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 204
Query: 277 TFSNAMLYN-PKGQ 289
+N++ YN P+ Q
Sbjct: 205 ILANSVKYNGPESQ 218
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 226 WVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285
+ F+ PV+ K + KDYY II PMDL T++ + K LY + EF E + + N+ YN
Sbjct: 33 YPFHTPVNAKVV--KDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 217 ERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRI 276
+++M W F+ PV+ K + DYY +I +PMDL T++ +SK+ Y++ F +DV +
Sbjct: 180 QKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 237
Query: 277 TFSNAMLYN-PKGQ 289
+N++ YN P+ Q
Sbjct: 238 ILANSVKYNGPESQ 251
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 226 WVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285
+ F+ PV+ K + KDYY II PMDL T++ + K LY + EF E + + N+ YN
Sbjct: 66 YPFHTPVNAKVV--KDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123
Query: 286 -PKGQDVHI------MAEELSKIFEDTWKKIEAEYN 314
PK I + +E K ED ++E N
Sbjct: 124 GPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAIN 159
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 217 ERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRI 276
+++M W F+ PV+ K + DYY +I +PMDL T++ +SK+ Y++ F +DV +
Sbjct: 159 QKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 216
Query: 277 TFSNAMLYN-PKGQ 289
+N++ YN P+ Q
Sbjct: 217 ILANSVKYNGPESQ 230
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 226 WVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285
+ F+ PV+ K + KDYY II PMDL T++ + K LY + EF E + + N+ YN
Sbjct: 45 YPFHTPVNAKVV--KDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 102
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 213 RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE 272
R++L++L +F +PV +K + DY IKHPMD T++ RL YK EF E
Sbjct: 19 RSVLDQLQDKDPARIFAQPVSLKEV--PDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEE 76
Query: 273 DVRITFSNAMLYNPK 287
D + N M YN +
Sbjct: 77 DFDLIIDNCMKYNAR 91
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 217 ERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRI 276
+++M W F+ PV+ K + DYY +I +PMDL T++ +SK+ Y++ F +DV +
Sbjct: 40 QKMMAVPDSWPFHHPVNKKFV--PDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 97
Query: 277 TFSNAMLYN-PKGQ 289
+N++ YN P+ Q
Sbjct: 98 ILANSVKYNGPESQ 111
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSK 300
DYY IIK P+DL T+ R+ YK+ A+D+ + NA YN G V A + K
Sbjct: 47 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 106
Query: 301 IFEDTWKKIEAEYN 314
IF KK E E++
Sbjct: 107 IF--YMKKAEIEHH 118
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSK 300
DYY IIK P+DL T+ R+ YK+ A+D+ + NA YN G V A + K
Sbjct: 46 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 105
Query: 301 IFEDTWKKIEAEYN 314
IF KK E E++
Sbjct: 106 IF--YMKKAEIEHH 117
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSK 300
DYY IIK P+DL T+ R+ YK+ A+D+ + NA YN G V A + K
Sbjct: 44 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 103
Query: 301 IFEDTWKKIEAEYN 314
IF KK E E++
Sbjct: 104 IF--YMKKAEIEHH 115
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 242 YYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285
Y IIKHPMD GT+K ++ N YK+ EF D ++ NAM YN
Sbjct: 46 YSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 217 ERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRI 276
+++M W F+ PV+ K + DYY +I +P+DL T++ +SK+ Y++ F +DV +
Sbjct: 37 QKMMAVPDSWPFHHPVNKKFV--PDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNL 94
Query: 277 TFSNAMLYN-PKGQ 289
+N++ YN P+ Q
Sbjct: 95 ILANSVKYNGPESQ 108
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSK 300
DYY II PMDL ++ + + Y ED+++ F NA YN +G V+ A L K
Sbjct: 63 DYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEK 122
Query: 301 IFEDTWKKI 309
+ ++ K++
Sbjct: 123 LLKEKRKEL 131
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 210 QSCRNLLERLMKHKFGWVFNKPV-DVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPR 268
++ L+ +L + F+ PV D G Y IIKHPMD T+K ++ N Y++
Sbjct: 11 EALNQLMRQLQRKDPSAFFSFPVTDFIAPG---YSMIIKHPMDFSTMKEKIKNNDYQSIE 67
Query: 269 EFAEDVRITFSNAMLYN 285
E ++ ++ +NAM+YN
Sbjct: 68 ELKDNFKLMCTNAMIYN 84
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L DYY IK PMD+ +++ + N Y+ ED + F+NA YN ++ A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 299 SKIFEDTWKKIEAE 312
K+ +T + +E +
Sbjct: 111 HKVLLETRRDLEGD 124
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY +I+ P+D +K R+ + Y++ + +DV + NA +N +G ++ + L
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 299 SKIFEDTWKKIEAE 312
+F +KIE E
Sbjct: 108 QSVFTSVRQKIEKE 121
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY +I+ P+D +K R+ + Y++ + +DV + NA +N +G ++ + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 108
Query: 299 SKIFEDTWKKIEAE 312
+F +KIE E
Sbjct: 109 QSVFTSVRQKIEKE 122
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY +I+ P+D +K R+ + Y++ + +DV + NA +N +G ++ + L
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 103
Query: 299 SKIFEDTWKKIEAE 312
+F +KIE E
Sbjct: 104 QSVFTSVRQKIEKE 117
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 213 RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE 272
R LE+L + G +F++PV + + DY IK PMD T+K L Y +F E
Sbjct: 13 RKTLEQLQEKDTGNIFSEPVPLSEV--PDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEE 70
Query: 273 DVRITFSNAMLYNPK 287
D + SN + YN K
Sbjct: 71 DFNLIVSNCLKYNAK 85
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L DYY IK PMD+ +++ + N Y+ ED + F+NA YN ++ A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 299 SKIFEDT 305
K+ +T
Sbjct: 111 HKVLLET 117
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY +I+ P+D +K R+ + Y++ + +DV + NA +N +G
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEG---------- 98
Query: 299 SKIFEDTWKKIEAEYNFSRQS 319
S+I+ED+ +++ + +RQS
Sbjct: 99 SQIYEDSI-VLQSVFKSARQS 118
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY----NPKGQDV 291
DYY I P+DL T++ ++ YKT F D+ F NA Y +P G+DV
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDV 101
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY I+ PM L VK L Y +F D+ + F NA ++N ++ A L
Sbjct: 243 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 299 SKIF 302
+ F
Sbjct: 303 TNYF 306
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY I+ PM L VK L Y +F D+ + F NA ++N ++ A L
Sbjct: 228 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 287
Query: 299 SKIF 302
+ F
Sbjct: 288 TNYF 291
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 210 QSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPRE 269
+SCRN +L+ F ++ P K DYY IK P+ L ++ +L Y+T
Sbjct: 30 RSCRNNQGQLIAEPF---YHLPSKKK---YPDYYQQIKMPISLQQIRTKLKNQEYETLDH 83
Query: 270 FAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
D+ + F NA YN ++ +L ++ + K++
Sbjct: 84 LECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY I+ P L VK L Y +F D + F NA ++N ++ A L
Sbjct: 193 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 252
Query: 299 SKIF 302
+ F
Sbjct: 253 TNYF 256
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 239 LKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEEL 298
L +YY I+ P L VK L Y +F D + F NA ++N ++ A L
Sbjct: 187 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 246
Query: 299 SKIF 302
+ F
Sbjct: 247 TNYF 250
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 379 PLEARTLERVDSVPIPDDLKRKATDLAHQDTILVPKKPKANNPDKRDM 426
P+E RT+E D P DD+++K TD ++ P P DK+ +
Sbjct: 149 PVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTL 196
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284
DYY ++ P+DL ++ +L Y D ++ F+NA Y
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 250 MDLGTVKARLSKNL---YKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTW 306
+DL ++ARL + L Y +P+EFA+DV F DV + L + FE
Sbjct: 115 LDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSII-GLQRFFETRM 173
Query: 307 KKIEAEYNFS 316
+ + FS
Sbjct: 174 NEAFGDTKFS 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,373,031
Number of Sequences: 62578
Number of extensions: 605639
Number of successful extensions: 1350
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 88
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)