Query 007876
Match_columns 586
No_of_seqs 385 out of 1483
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 16:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 6.7E-45 1.5E-49 411.0 16.6 393 89-495 105-531 (640)
2 cd05496 Bromo_WDR9_II Bromodom 100.0 7.7E-28 1.7E-32 218.2 12.7 109 206-316 4-113 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1.9E-27 4E-32 212.5 12.3 105 206-310 2-107 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.3E-27 2.9E-32 213.0 11.1 103 207-309 4-107 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 6.4E-27 1.4E-31 205.2 10.1 95 209-305 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 1.5E-26 3.2E-31 203.2 10.2 99 208-306 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.5E-26 3.2E-31 202.8 10.1 96 209-306 2-97 (97)
8 cd05504 Bromo_Acf1_like Bromod 99.9 3.1E-26 6.7E-31 206.8 11.5 104 204-309 9-112 (115)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 3.8E-26 8.1E-31 201.7 10.0 98 209-306 2-102 (102)
10 cd05501 Bromo_SP100C_like Brom 99.9 7.4E-26 1.6E-30 199.5 11.8 98 208-310 3-100 (102)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 7.4E-26 1.6E-30 200.0 10.4 98 209-306 2-102 (102)
12 cd05507 Bromo_brd8_like Bromod 99.9 1.2E-25 2.6E-30 199.6 11.0 100 207-308 3-102 (104)
13 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.3E-25 2.8E-30 198.9 11.2 100 206-305 3-102 (103)
14 cd05502 Bromo_tif1_like Bromod 99.9 1.7E-25 3.7E-30 200.1 11.5 102 206-310 3-107 (109)
15 cd05510 Bromo_SPT7_like Bromod 99.9 1.3E-25 2.7E-30 201.8 10.7 104 205-310 5-110 (112)
16 cd05509 Bromo_gcn5_like Bromod 99.9 2.2E-25 4.8E-30 196.5 10.4 100 208-309 2-101 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 2.7E-25 5.9E-30 195.5 10.5 97 206-305 2-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 6.9E-25 1.5E-29 195.6 9.8 100 208-309 2-107 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 1.1E-24 2.3E-29 191.4 9.8 93 208-302 2-94 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.9 2.5E-24 5.5E-29 193.5 11.2 103 206-310 2-108 (112)
21 cd05512 Bromo_brd1_like Bromod 99.9 2.4E-24 5.2E-29 189.2 9.8 92 208-301 2-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 4.4E-24 9.4E-29 192.0 11.3 102 211-314 4-105 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 1.5E-23 3.3E-28 185.7 9.5 96 209-306 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 2.6E-23 5.5E-28 184.9 9.5 97 209-307 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 3.5E-23 7.6E-28 186.4 10.4 102 208-311 3-110 (113)
26 smart00297 BROMO bromo domain. 99.9 1.1E-22 2.4E-27 179.8 11.2 102 205-308 5-106 (107)
27 cd05529 Bromo_WDR9_I_like Brom 99.9 1.3E-22 2.8E-27 186.5 11.8 101 206-307 23-126 (128)
28 cd05520 Bromo_polybromo_III Br 99.9 9.4E-23 2E-27 180.7 9.4 80 224-305 23-102 (103)
29 cd05517 Bromo_polybromo_II Bro 99.9 1.1E-22 2.5E-27 180.2 9.1 94 209-304 2-101 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 1.8E-22 4E-27 179.7 10.3 96 208-305 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 2E-22 4.3E-27 178.7 9.2 94 210-305 3-102 (103)
32 cd04369 Bromodomain Bromodomai 99.8 2.6E-21 5.5E-26 166.3 9.2 96 209-306 2-99 (99)
33 PF00439 Bromodomain: Bromodom 99.8 2.3E-21 5E-26 164.1 8.6 84 212-297 1-84 (84)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 3.3E-21 7.1E-26 171.2 9.6 94 210-305 4-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 7.3E-21 1.6E-25 169.4 10.2 96 208-307 2-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 4.9E-20 1.1E-24 164.6 11.3 98 213-310 6-107 (109)
37 KOG1245 Chromatin remodeling c 99.7 1.4E-17 3E-22 200.3 7.4 95 212-309 1306-1400(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.7 9.3E-17 2E-21 143.4 10.0 98 208-309 4-107 (110)
39 COG5076 Transcription factor i 99.7 1.1E-16 2.3E-21 171.7 9.4 89 224-314 165-253 (371)
40 KOG1472 Histone acetyltransfer 99.4 1.8E-13 3.8E-18 154.2 6.1 103 207-311 606-708 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 2E-13 4.4E-18 123.3 4.8 81 207-287 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.3 3.8E-13 8.3E-18 157.1 3.7 189 121-314 477-670 (1051)
43 cd05491 Bromo_TBP7_like Bromod 99.0 2E-10 4.3E-15 103.5 3.7 41 248-288 63-103 (119)
44 KOG0008 Transcription initiati 98.9 2.8E-09 6.1E-14 125.0 6.8 98 210-309 1385-1482(1563)
45 KOG1474 Transcription initiati 98.7 1.8E-09 3.9E-14 123.5 0.4 94 218-311 3-96 (640)
46 KOG0386 Chromatin remodeling c 98.7 2E-08 4.4E-13 115.7 7.4 100 210-311 1027-1132(1157)
47 KOG1827 Chromatin remodeling c 98.7 2.5E-08 5.5E-13 111.6 7.2 99 207-307 52-156 (629)
48 KOG0008 Transcription initiati 98.6 6.6E-08 1.4E-12 113.8 7.7 102 210-313 1264-1365(1563)
49 KOG1472 Histone acetyltransfer 98.5 7.9E-08 1.7E-12 109.2 4.9 67 221-289 300-366 (720)
50 KOG1828 IRF-2-binding protein 98.2 4.5E-07 9.8E-12 95.6 0.2 98 208-307 20-117 (418)
51 KOG1828 IRF-2-binding protein 97.8 1.2E-05 2.6E-10 85.2 3.6 82 216-300 217-298 (418)
52 COG5076 Transcription factor i 96.8 0.00036 7.8E-09 75.4 0.8 92 216-309 272-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.2 0.0056 1.2E-07 56.8 4.3 66 249-314 59-124 (131)
54 KOG0644 Uncharacterized conser 91.3 0.16 3.4E-06 59.2 3.3 61 246-306 1050-1110(1113)
55 KOG0732 AAA+-type ATPase conta 86.4 0.63 1.4E-05 56.3 3.8 64 225-288 533-601 (1080)
56 PF05110 AF-4: AF-4 proto-onco 81.3 1.5 3.2E-05 54.2 4.2 22 561-583 442-464 (1191)
57 KOG3116 Predicted C3H1-type Zn 78.8 1.4 3.1E-05 41.6 2.3 26 558-583 134-159 (177)
58 PHA03308 transcriptional regul 73.7 2.3 4.9E-05 49.2 2.6 13 101-113 376-388 (1463)
59 PHA03308 transcriptional regul 73.0 2.7 5.7E-05 48.7 2.9 8 477-484 1196-1203(1463)
60 KOG2140 Uncharacterized conser 70.9 2.6 5.7E-05 47.4 2.2 18 471-488 535-552 (739)
61 KOG0644 Uncharacterized conser 58.6 5.5 0.00012 47.1 1.9 68 230-300 88-185 (1113)
62 KOG1827 Chromatin remodeling c 54.5 1.9 4E-05 49.7 -2.7 75 226-302 214-288 (629)
63 PF14372 DUF4413: Domain of un 53.8 33 0.00072 30.2 5.6 53 261-313 3-55 (101)
64 PF05110 AF-4: AF-4 proto-onco 53.3 10 0.00023 47.1 3.1 9 449-457 329-337 (1191)
65 KOG2130 Phosphatidylserine-spe 53.3 10 0.00023 40.3 2.7 18 263-280 157-174 (407)
66 KOG2140 Uncharacterized conser 51.2 9.8 0.00021 43.1 2.2 14 509-522 597-610 (739)
67 KOG2548 SWAP mRNA splicing reg 44.3 34 0.00073 38.8 5.0 25 464-488 197-221 (653)
68 PF07218 RAP1: Rhoptry-associa 40.1 52 0.0011 37.6 5.6 28 467-494 38-65 (782)
69 PF10872 DUF2740: Protein of u 39.0 29 0.00062 26.0 2.3 15 111-125 30-44 (48)
70 cd05494 Bromodomain_1 Bromodom 34.6 29 0.00063 31.5 2.2 68 422-493 42-109 (114)
71 KOG2130 Phosphatidylserine-spe 32.9 35 0.00076 36.5 2.8 10 107-116 19-28 (407)
72 TIGR02606 antidote_CC2985 puta 30.2 64 0.0014 26.7 3.4 27 253-279 12-38 (69)
73 PF11116 DUF2624: Protein of u 29.1 52 0.0011 28.6 2.7 63 425-487 14-80 (85)
74 PRK08898 coproporphyrinogen II 23.1 1.3E+02 0.0028 32.9 5.2 46 440-485 86-131 (394)
75 PF11458 Mistic: Membrane-inte 22.5 76 0.0016 27.0 2.4 30 426-456 3-32 (84)
76 PF10047 DUF2281: Protein of u 21.0 86 0.0019 25.6 2.5 21 433-453 4-24 (66)
77 smart00340 HALZ homeobox assoc 20.4 68 0.0015 24.3 1.6 16 108-123 20-35 (44)
78 PHA03309 transcriptional regul 20.3 81 0.0018 37.9 2.9 34 539-572 1792-1833(2033)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=6.7e-45 Score=410.97 Aligned_cols=393 Identities=33% Similarity=0.429 Sum_probs=227.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcc-cccccccccCCCCCC------Cc-cccc
Q 007876 89 FDSFVKISFDLNNREEVRALKRKLASELEQVTSLVKRLDATQTQLSKIVHR-NAGTVSVNKNGNNQG------KS-VDKK 160 (586)
Q Consensus 89 ~~~~~~~~~~~~s~~e~~~l~~rl~~el~qvr~l~kr~~~~~~~~~~~~~s-~~~~~~~~~n~~~~~------~~-~~~~ 160 (586)
...++++++..+++.++++|..+|+.+|+|||.+.++++ ......-++. ...+..+..+...+. .. ....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 182 (640)
T KOG1474|consen 105 GPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVE--FSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKS 182 (640)
T ss_pred ccccccCcCCCCchhhhhhhhhccccccccCCccccccc--ccccccccCCCCCcccccccccchhhhhccccccccccC
Confidence 567789999999999999999999999999999999998 1111111111 011111111100000 00 0000
Q ss_pred ccCcccccccccccccccccCCCCcccccccccCCCCCccccCChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCC
Q 007876 161 KMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLK 240 (586)
Q Consensus 161 ~~~p~~~k~~~~~~~~~~~~~~p~~~~kk~k~~~~~~~~~~~~~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~p 240 (586)
.+.+...+.+.... .+.....+. +.. .. .........+..++++|..||.+||.|+++|+|+.|||++.||+|
T Consensus 183 ~~~~~~~~~~~~~~-~~~~~~~~~----~~~-~~-~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLp 255 (640)
T KOG1474|consen 183 EREPSPGQKREGTV-APNSSRESG----DSA-AE-EEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLP 255 (640)
T ss_pred cCCCCccccccccc-cCccccccc----ccc-cc-ccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCc
Confidence 00000000000000 000000000 000 00 011123345788999999999999999999999999999999999
Q ss_pred ChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 007876 241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSK 320 (586)
Q Consensus 241 DY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~~~~~~~ 320 (586)
|||+|||+||||+||+.||++|.|.++.+|++||||||.|||+||++|++||.||+.|+++|+.+|+.++.++.......
T Consensus 256 DY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~ 335 (640)
T KOG1474|consen 256 DYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAV 335 (640)
T ss_pred chhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887765321111
Q ss_pred cCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCCCCCCC-CCCCCChhhhh-hhhhcCCCCCC
Q 007876 321 MGRKSDFA-TPIPKTVPAPPPPVHTPTLGPPLPV-HSPTSA--HPVPVHTPTPVHT-PPPPSGPLEAR-TLERVDSVPIP 394 (586)
Q Consensus 321 ~~~~~e~~-~p~P~s~~ap~p~~~~~~~~~~~~~-~s~~ss--~~~~~~~~~~~~~-~~~~~~~~~~r-~~~r~~s~~~~ 394 (586)
.++..... ...+....+.+ .. ....... .+.... +..+........- ......+.... .+.+.-.....
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 410 (640)
T KOG1474|consen 336 KEEAGMASSDQIPSNSVEGP--RS---SSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPR 410 (640)
T ss_pred ccccccccccccccccccCc--cc---ccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccc
Confidence 11000000 00000000000 00 0000000 000000 0000000000000 00000000000 00000000000
Q ss_pred c-hhhhhccccc---ccccccCCCCCCCCCCCCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHH--HhhCCCCCCCCCcE
Q 007876 395 D-DLKRKATDLA---HQDTILVPKKPKANNPDKRDMTYEEKQRLSMNLQE-LPSDKLDHVVQII--KKRNPVLSQQDDEI 467 (586)
Q Consensus 395 ~-~~k~k~~~~~---~~~~~~~~kkpk~~~~~~rpMT~eEK~~Ls~~I~~-Lp~ekL~~VV~II--q~~~p~l~~~~dEI 467 (586)
. ..+....... ........+.........+.||+.|+..|...+.. +|+.+|..+++|| ..+.+.+.+++++|
T Consensus 411 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~ 490 (640)
T KOG1474|consen 411 KIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEI 490 (640)
T ss_pred cccccccccccccchhhhhhhhhccccccccccccccccccccchhhccCCCCCccccCcccccchhhhcccccccccch
Confidence 0 0000000000 00000112223334557899999999999999999 5999999999999 55778888889999
Q ss_pred EEeCCCCC-------------HHHHHHHHHHHHHHHHhhhh
Q 007876 468 EVDIDTFD-------------PETLWELDRFVTNYNKILSK 495 (586)
Q Consensus 468 EIDId~L~-------------~~TLreL~ryV~~~kK~~~K 495 (586)
++|++.++ ..|+|++.+|+..+.....+
T Consensus 491 ~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~ 531 (640)
T KOG1474|consen 491 ELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELELSK 531 (640)
T ss_pred hhcccccccccccCCCcccchhhhhhccccchhhHHHHHHH
Confidence 99999999 99999999999988765543
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=7.7e-28 Score=218.21 Aligned_cols=109 Identities=37% Similarity=0.582 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007876 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
..|.+.|..||..|++|+.+|+|..|||+.. +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007876 286 PK-GQDVHIMAEELSKIFEDTWKKIEAEYNFS 316 (586)
Q Consensus 286 ~~-~s~V~~~A~~L~~~Fe~~~~~i~~~~~~~ 316 (586)
++ ++.||.+|..|+.+|+++|+++...+...
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~~~ 113 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDWKSA 113 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999999887643
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.9e-27 Score=212.47 Aligned_cols=105 Identities=36% Similarity=0.611 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007876 206 GRLFQSCRNLLERLMKH-KFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~-k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
.++.++|..||+.|+++ +.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 99999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007876 285 NPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 285 N~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
|++++.|+.+|.+|+++|++.+..+.
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.3e-27 Score=213.05 Aligned_cols=103 Identities=43% Similarity=0.728 Sum_probs=97.3
Q ss_pred HHHHHH-HHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007876 207 RLFQSC-RNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 207 ~~~k~c-~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
..++.| ..||..|++|+.+|+|..|||+...++||||+||++||||+||++||++|.|.++.+|.+||+|||.||+.||
T Consensus 4 ~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 455655 6889999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 007876 286 PKGQDVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~~~i 309 (586)
++++.|+.+|..|+++|+++++++
T Consensus 84 ~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 84 KPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999998764
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.4e-27 Score=205.16 Aligned_cols=95 Identities=31% Similarity=0.602 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 007876 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKG 288 (586)
Q Consensus 209 ~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~ 288 (586)
+++|..||+.|++++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999876 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 007876 289 QDVHIMAEELSKIFEDT 305 (586)
Q Consensus 289 s~V~~~A~~L~~~Fe~~ 305 (586)
+.|+.+|..|++.|..+
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=203.19 Aligned_cols=99 Identities=65% Similarity=1.145 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 007876 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~ 287 (586)
++++|..||+.|++++.+|+|..||++...++|+||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999887779999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 007876 288 GQDVHIMAEELSKIFEDTW 306 (586)
Q Consensus 288 ~s~V~~~A~~L~~~Fe~~~ 306 (586)
++.++.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=202.77 Aligned_cols=96 Identities=36% Similarity=0.709 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 007876 209 FQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKG 288 (586)
Q Consensus 209 ~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~ 288 (586)
+.+|..||..|++++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 6789999999999999999999999886 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 007876 289 QDVHIMAEELSKIFEDTW 306 (586)
Q Consensus 289 s~V~~~A~~L~~~Fe~~~ 306 (586)
+.++.+|..|+++|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.1e-26 Score=206.81 Aligned_cols=104 Identities=38% Similarity=0.645 Sum_probs=100.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 007876 204 NLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 204 ~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
.+...+..|..||..|+.++.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999765 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007876 284 YNPKGQDVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 284 YN~~~s~V~~~A~~L~~~Fe~~~~~i 309 (586)
||++++.++.+|..|+++|+.+|+++
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999886
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.8e-26 Score=201.74 Aligned_cols=98 Identities=48% Similarity=0.912 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcC---CCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007876 209 FQSCRNLLERLMKH---KFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 209 ~k~c~~IL~~L~~~---k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
+++|..||+.|+.+ +.+++|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 789999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 007876 286 PKGQDVHIMAEELSKIFEDTW 306 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~ 306 (586)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 10
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.4e-26 Score=199.51 Aligned_cols=98 Identities=30% Similarity=0.418 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 007876 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~ 287 (586)
.++.|+.||..|++++.+++|..++ . ++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~p--~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISKP--Y--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCCC--C--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999997632 2 49999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 007876 288 GQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 288 ~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
+ .++.+|..|++.|+++|+.+.
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999999875
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.4e-26 Score=199.98 Aligned_cols=98 Identities=41% Similarity=0.900 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcC---CCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007876 209 FQSCRNLLERLMKH---KFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 209 ~k~c~~IL~~L~~~---k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
++.|..||..|+++ ..+|+|..|||+...++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999995 469999999999866799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 007876 286 PKGQDVHIMAEELSKIFEDTW 306 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~ 306 (586)
++++.++.+|..|++.|+.+|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 12
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.2e-25 Score=199.57 Aligned_cols=100 Identities=28% Similarity=0.469 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 007876 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP 286 (586)
Q Consensus 207 ~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~ 286 (586)
.|.+.|..||+.|+.|+.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 478999999999999999999999999865 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 007876 287 KGQDVHIMAEELSKIFEDTWKK 308 (586)
Q Consensus 287 ~~s~V~~~A~~L~~~Fe~~~~~ 308 (586)
+++.|+.+|..|++.|...+..
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999887654
No 13
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=198.89 Aligned_cols=100 Identities=31% Similarity=0.467 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007876 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
..+.++|..||..|++++.+++|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45789999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 007876 286 PKGQDVHIMAEELSKIFEDT 305 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~ 305 (586)
+++|.++.+|..|++.|++.
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999975
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.7e-25 Score=200.07 Aligned_cols=102 Identities=34% Similarity=0.615 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHhhhhhc
Q 007876 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSK---NLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~---~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
...+++|..||..|++|+.+|+|..||++ . +|+||++|++||||+||++||+. |.|.++.+|.+||+|||+||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998 3 99999999999999999999998 699999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007876 283 LYNPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
.||++++.++.+|..|++.|++.|..+.
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999875
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=201.83 Aligned_cols=104 Identities=31% Similarity=0.471 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHcC-CCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 007876 205 LGRLFQSCRNLLERLMKH-KFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~-k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
-.++.+.|..||..|+.+ +.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999 89999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 007876 284 YNPKGQ-DVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 284 YN~~~s-~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
||++++ .++.+|..|++.|+..+..|+
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999865 678999999999999998875
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.2e-25 Score=196.48 Aligned_cols=100 Identities=36% Similarity=0.658 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 007876 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~ 287 (586)
+..+|..||+.|++|+.+++|..||++.. +|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 007876 288 GQDVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 288 ~s~V~~~A~~L~~~Fe~~~~~i 309 (586)
++.++.+|..|+..|++.++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999988763
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=195.50 Aligned_cols=97 Identities=29% Similarity=0.440 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007876 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
.++...+..+++.|+ |+.+|+|..||++.. +||||.+|++||||+||++||++|.|.++++|.+||+|||.||+.||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456777888899999 999999999999865 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 007876 286 PKGQDVHIMAEELSKIFEDT 305 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~ 305 (586)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999864
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=6.9e-25 Score=195.65 Aligned_cols=100 Identities=25% Similarity=0.429 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 007876 208 LFQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNA 281 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na 281 (586)
+.+.|..||+.|+.+++ +|+|..||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999886 899999998875 9999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007876 282 MLYNPKGQDVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 282 ~~YN~~~s~V~~~A~~L~~~Fe~~~~~i 309 (586)
+.||++|+.||.+|..|+++|++.+.++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998764
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.1e-24 Score=191.39 Aligned_cols=93 Identities=30% Similarity=0.392 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 007876 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~ 287 (586)
+.+.|..||+.|+.++.+++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999765 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 007876 288 GQDVHIMAEELSKIF 302 (586)
Q Consensus 288 ~s~V~~~A~~L~~~F 302 (586)
++.+|.+|.+|...-
T Consensus 80 ~s~~~~~A~~L~~~~ 94 (98)
T cd05513 80 DTIYYKAAKKLLHSG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999997653
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=2.5e-24 Score=193.46 Aligned_cols=103 Identities=34% Similarity=0.483 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007876 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
.++...|..||+.|+.|+.+|+|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 3567788999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHHHHHH
Q 007876 286 PKG----QDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 286 ~~~----s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
+++ +.|+.+|..|++.|..+|..+.
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcC
Confidence 994 7999999999999999987753
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.4e-24 Score=189.22 Aligned_cols=92 Identities=29% Similarity=0.479 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 007876 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~ 287 (586)
+...|+.+|++|+.++.+|+|..||+... +||||++|++||||+||++||.++.|.++++|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 007876 288 GQDVHIMAEELSKI 301 (586)
Q Consensus 288 ~s~V~~~A~~L~~~ 301 (586)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.4e-24 Score=191.98 Aligned_cols=102 Identities=31% Similarity=0.555 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCH
Q 007876 211 SCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQD 290 (586)
Q Consensus 211 ~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~ 290 (586)
.+..||.+|++++.+++|..||++.. +|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||++++.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46789999999999999999999886 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 007876 291 VHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 291 V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
++.+|..|.+.|+..+..++.++.
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~~ 105 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKLT 105 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999988775
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.5e-23 Score=185.67 Aligned_cols=96 Identities=30% Similarity=0.482 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 007876 209 FQSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 209 ~k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
.+.|..|++.|+.++ .+++|..||+... +||||++|++||||+||++||++|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999544 5899999998876 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 007876 283 LYNPKGQDVHIMAEELSKIFEDTW 306 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~ 306 (586)
.||++++.++.+|..|++.|+.+|
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.6e-23 Score=184.94 Aligned_cols=97 Identities=23% Similarity=0.408 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 007876 209 FQSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 209 ~k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
.++|..|++.|..++ .+++|..||+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 578888888888654 4799999998876 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 007876 283 LYNPKGQDVHIMAEELSKIFEDTWK 307 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~ 307 (586)
.||++++.||.+|..|+++|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988753
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.5e-23 Score=186.37 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 007876 208 LFQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNA 281 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na 281 (586)
.++.|..||+.|++++. +.+|..+++... +||||++|++||||+||++||.++.|.++.+|.+||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 36899999999997654 568999888665 9999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007876 282 MLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311 (586)
Q Consensus 282 ~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~ 311 (586)
+.||++++.+|.+|..|+++|++.++++..
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999888753
No 26
>smart00297 BROMO bromo domain.
Probab=99.88 E-value=1.1e-22 Score=179.79 Aligned_cols=102 Identities=40% Similarity=0.669 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007876 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
...+...|..|+..+..++.+++|..||+... +|+||.+|++||||++|++||++|.|.++.+|.+||+|||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999887 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 007876 285 NPKGQDVHIMAEELSKIFEDTWKK 308 (586)
Q Consensus 285 N~~~s~V~~~A~~L~~~Fe~~~~~ 308 (586)
|++++.++.+|..|...|+..|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 27
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.3e-22 Score=186.53 Aligned_cols=101 Identities=26% Similarity=0.425 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHH---cCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 007876 206 GRLFQSCRNLLERLM---KHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~---~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
..+...|..+|..|+ .++.+++|..||+... .+|+||++|++||||+||++||.++.|.++++|..||+|||.||+
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 567888999999999 8999999999999883 499999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 007876 283 LYNPKGQDVHIMAEELSKIFEDTWK 307 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~ 307 (586)
.||++++.++.+|..|++.|...+.
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998875
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=9.4e-23 Score=180.72 Aligned_cols=80 Identities=29% Similarity=0.461 Sum_probs=77.1
Q ss_pred CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHH
Q 007876 224 FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFE 303 (586)
Q Consensus 224 ~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~Fe 303 (586)
.+++|..+|+... +||||++|++||||+||++||++|.|.++.+|+.||+|||.||++||++++.+|.+|..|+++|+
T Consensus 23 ~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~ 100 (103)
T cd05520 23 LAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQ 100 (103)
T ss_pred ccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 6899999998876 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 007876 304 DT 305 (586)
Q Consensus 304 ~~ 305 (586)
++
T Consensus 101 ~~ 102 (103)
T cd05520 101 AK 102 (103)
T ss_pred Hh
Confidence 74
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.1e-22 Score=180.20 Aligned_cols=94 Identities=31% Similarity=0.455 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 007876 209 FQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 209 ~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
.+.|+.|++.|+.+.+ +++|..+++... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999988664 699999988876 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 007876 283 LYNPKGQDVHIMAEELSKIFED 304 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~ 304 (586)
.||++|+.|+.+|..|+++|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.8e-22 Score=179.70 Aligned_cols=96 Identities=26% Similarity=0.387 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 007876 208 LFQSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNA 281 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na 281 (586)
+.+.|..||..|...+ .+|+|..+++... +||||++|++||||+||++||.+|.|.++++|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4566788888877655 3799999988876 9999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHH
Q 007876 282 MLYNPKGQDVHIMAEELSKIFEDT 305 (586)
Q Consensus 282 ~~YN~~~s~V~~~A~~L~~~Fe~~ 305 (586)
+.||++++.++.+|..|+++|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2e-22 Score=178.65 Aligned_cols=94 Identities=28% Similarity=0.464 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcC------CCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 007876 210 QSCRNLLERLMKH------KFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 210 k~c~~IL~~L~~~------k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
++|..|++.|... ..+.+|..+|+... +||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455555555543 46889999998876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 007876 284 YNPKGQDVHIMAEELSKIFEDT 305 (586)
Q Consensus 284 YN~~~s~V~~~A~~L~~~Fe~~ 305 (586)
||++++.|+.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 32
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.85 E-value=2.6e-21 Score=166.27 Aligned_cols=96 Identities=43% Similarity=0.637 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 007876 209 FQSCRNLLERLMKH--KFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP 286 (586)
Q Consensus 209 ~k~c~~IL~~L~~~--k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~ 286 (586)
...|..|+..|+.+ +.+++|..||+... +|+|+.+|++||||++|+.||.+|.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46799999999999 99999999999865 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 007876 287 KGQDVHIMAEELSKIFEDTW 306 (586)
Q Consensus 287 ~~s~V~~~A~~L~~~Fe~~~ 306 (586)
.++.++.+|..|...|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.85 E-value=2.3e-21 Score=164.06 Aligned_cols=84 Identities=49% Similarity=0.810 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHH
Q 007876 212 CRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDV 291 (586)
Q Consensus 212 c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V 291 (586)
|..||+.|++|+.+++|..||+... +|+|+++|++||||.+|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8999999999999999999997766 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 007876 292 HIMAEE 297 (586)
Q Consensus 292 ~~~A~~ 297 (586)
|.+|++
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.3e-21 Score=171.17 Aligned_cols=94 Identities=28% Similarity=0.382 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHc------CCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 007876 210 QSCRNLLERLMK------HKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 210 k~c~~IL~~L~~------~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
.++..|++.|++ ++.+++|..+|+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555555554 446899999998776 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 007876 284 YNPKGQDVHIMAEELSKIFEDT 305 (586)
Q Consensus 284 YN~~~s~V~~~A~~L~~~Fe~~ 305 (586)
||++++.++.+|..|++.|+..
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=7.3e-21 Score=169.43 Aligned_cols=96 Identities=35% Similarity=0.432 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 007876 208 LFQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNA 281 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na 281 (586)
+.++|..|++.|+..+. +.+|..+++... +||||++|++||||+||++||.+ |.++.+|.+||+|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 45778888888887664 568998887766 99999999999999999999998 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHH
Q 007876 282 MLYNPKGQDVHIMAEELSKIFEDTWK 307 (586)
Q Consensus 282 ~~YN~~~s~V~~~A~~L~~~Fe~~~~ 307 (586)
+.||++++.+|.+|..|+++|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998764
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=4.9e-20 Score=164.63 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=85.8
Q ss_pred HHHHHHHHc-CCCCccCcCCCCcC---cCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 007876 213 RNLLERLMK-HKFGWVFNKPVDVK---GLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKG 288 (586)
Q Consensus 213 ~~IL~~L~~-~k~a~~F~~PVd~~---~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~ 288 (586)
..++..+.. -+-.++|..||... ..++|||+.+|++||||+||++||++|.|+++++|.+||+|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344555555 45579999999743 33599999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 007876 289 QDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 289 s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
+.++.+|..|.......+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888887764
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.4e-17 Score=200.32 Aligned_cols=95 Identities=40% Similarity=0.825 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHH
Q 007876 212 CRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDV 291 (586)
Q Consensus 212 c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V 291 (586)
|..||..|+.|+.+|||+.||+... +||||+||++||||.||+.|+..|.|.++.+|+.||+|||.||..||.. +.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999998 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007876 292 HIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 292 ~~~A~~L~~~Fe~~~~~i 309 (586)
+.++..|..+|+.+|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988765
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.69 E-value=9.3e-17 Score=143.45 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 007876 208 LFQSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNA 281 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na 281 (586)
+...+..|+..++.|. ++.+|.+.+.. .++||.+|+.||||.+|++||.+|.|.++++|..||.|||.||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~----~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPEL----AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCCc----ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH
Confidence 4566778888888887 37788887762 5788999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007876 282 MLYNPKGQDVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 282 ~~YN~~~s~V~~~A~~L~~~Fe~~~~~i 309 (586)
.+||.+||.||.+|..|+.+|.....++
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877665
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=1.1e-16 Score=171.69 Aligned_cols=89 Identities=35% Similarity=0.516 Sum_probs=84.4
Q ss_pred CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHH
Q 007876 224 FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFE 303 (586)
Q Consensus 224 ~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~Fe 303 (586)
..++|..+|+... +||||.||+.||||++|+++|..+.|.++++|..|+.|||.||.+||.+++.|+.+|..|++.|.
T Consensus 165 ~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~ 242 (371)
T COG5076 165 LSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFL 242 (371)
T ss_pred cccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHH
Confidence 6889999988877 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 007876 304 DTWKKIEAEYN 314 (586)
Q Consensus 304 ~~~~~i~~~~~ 314 (586)
..+..++....
T Consensus 243 ~~i~~~~~~~~ 253 (371)
T COG5076 243 KLIEEIPEEML 253 (371)
T ss_pred HHHHhccccch
Confidence 99998876544
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.41 E-value=1.8e-13 Score=154.23 Aligned_cols=103 Identities=37% Similarity=0.606 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 007876 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP 286 (586)
Q Consensus 207 ~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~ 286 (586)
.+......||..|..|..+|||.+||+... +||||.+|++||||.||+.+|..+.|.....|.+|+.+||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 456677899999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 007876 287 KGQDVHIMAEELSKIFEDTWKKIEA 311 (586)
Q Consensus 287 ~~s~V~~~A~~L~~~Fe~~~~~i~~ 311 (586)
.++..|+.|..|...|...+.....
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred ccchheecccchhhhhcchhhhhhh
Confidence 9999999999999999988776643
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.40 E-value=2e-13 Score=123.29 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCC-------CCCCHHHHHHHHHHhhh
Q 007876 207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKN-------LYKTPREFAEDVRITFS 279 (586)
Q Consensus 207 ~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~-------~Y~s~~eF~~DvrLIf~ 279 (586)
+.+..|..+|..++.++.+|+|..||++...++||||++||+||||+||+++|.++ .|..-..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 46788889999999999999999999997778999999999999999999999986 44444567777777888
Q ss_pred hhcccCCC
Q 007876 280 NAMLYNPK 287 (586)
Q Consensus 280 Na~~YN~~ 287 (586)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 87777764
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.34 E-value=3.8e-13 Score=157.13 Aligned_cols=189 Identities=25% Similarity=0.286 Sum_probs=145.1
Q ss_pred HHHHHHhhhhcccchhhcccccccccccCC-CCCCCcccccccCcccccccccccc-cccccCCCCcccc--cccccC-C
Q 007876 121 SLVKRLDATQTQLSKIVHRNAGTVSVNKNG-NNQGKSVDKKKMAPKTNQFHKNLDV-VGFEKLNPMESNK--KLKSNT-K 195 (586)
Q Consensus 121 ~l~kr~~~~~~~~~~~~~s~~~~~~~~~n~-~~~~~~~~~~~~~p~~~k~~~~~~~-~~~~~~~p~~~~k--k~k~~~-~ 195 (586)
-..||+++.+.+|..++++...+- .|- ..+.+...+...+....+.|+..+. +......-....+ +.++.. +
T Consensus 477 w~~kR~~r~g~pLl~~lq~~~~s~---rn~~~~~~~~D~~~~~~~d~~k~~~~L~~~~~s~~~l~e~~r~r~~lk~~~~~ 553 (1051)
T KOG0955|consen 477 WYLKRLSRNGAPLLGRLQSLSKSS---RNKEQVGREGDLKNKARVDSLKYWQALRLDLESAQLLVELTRKREKLKRILVK 553 (1051)
T ss_pred HHHHHHhhCCcchhhhhhhhhhcc---ccchhcccccCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 456888888888877776655441 111 1123445556667777777877665 3333322222222 222221 2
Q ss_pred CCCccccCChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHH
Q 007876 196 GNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVR 275 (586)
Q Consensus 196 ~~~~~~~~~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~Dvr 275 (586)
.....+..++.+..+.|+.+|..|...+...+|..|||..+ +|||+++|++||||.||+.+++.+.|.++++|.+|+.
T Consensus 554 ~~~~~~~~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~ 631 (1051)
T KOG0955|consen 554 SQKEALELGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVN 631 (1051)
T ss_pred hhhhhhcccCchHHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHh
Confidence 23334555778899999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007876 276 ITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 276 LIf~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
||..||+.||..++.+|..|..+++.....+.....+.+
T Consensus 632 l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 632 LIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred HhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcccchh
Confidence 999999999999999999999999999988887766554
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.01 E-value=2e-10 Score=103.52 Aligned_cols=41 Identities=29% Similarity=0.517 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 007876 248 HPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKG 288 (586)
Q Consensus 248 ~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~ 288 (586)
.||||+||++||.+|.|.++.+|++||+|||.||..||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999874
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.86 E-value=2.8e-09 Score=124.96 Aligned_cols=98 Identities=26% Similarity=0.453 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 007876 210 QSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQ 289 (586)
Q Consensus 210 k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s 289 (586)
-....|+.+++.-+.+|+|..||+.+. +|+||.+|++||||.||.+++..+.|.+..+|.+||++|+.||..||+..+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~ 1462 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAES 1462 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccc
Confidence 455677788888889999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007876 290 DVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 290 ~V~~~A~~L~~~Fe~~~~~i 309 (586)
....-|+++-++....+.+.
T Consensus 1463 ~y~~k~~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1463 AYTKKARKIGEVGLANLLEY 1482 (1563)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 88888887777766655543
No 45
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.75 E-value=1.8e-09 Score=123.48 Aligned_cols=94 Identities=39% Similarity=0.721 Sum_probs=87.7
Q ss_pred HHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHH
Q 007876 218 RLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEE 297 (586)
Q Consensus 218 ~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~ 297 (586)
.+.+|.++|+|..||+.+.+++++||.+|++|||++||+.+|+++.|....+..+|+.-+|.||+.||..+.+|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007876 298 LSKIFEDTWKKIEA 311 (586)
Q Consensus 298 L~~~Fe~~~~~i~~ 311 (586)
+...|......++.
T Consensus 83 ~~~~~~~~~~~~~~ 96 (640)
T KOG1474|consen 83 LEKLFPKKLRSMPS 96 (640)
T ss_pred chhhcccccccccc
Confidence 99999776665543
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.71 E-value=2e-08 Score=115.68 Aligned_cols=100 Identities=29% Similarity=0.454 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 007876 210 QSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 210 k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
+.|..|+....++. .+..|...+.... +||||.||++||++..|++++.++.|.+..+...||.++|.||.+
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 67888887777555 3678998888777 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007876 284 YNPKGQDVHIMAEELSKIFEDTWKKIEA 311 (586)
Q Consensus 284 YN~~~s~V~~~A~~L~~~Fe~~~~~i~~ 311 (586)
||..||.||..|..|+.+|......+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888875
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.69 E-value=2.5e-08 Score=111.56 Aligned_cols=99 Identities=27% Similarity=0.357 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 007876 207 RLFQSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSN 280 (586)
Q Consensus 207 ~~~k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~N 280 (586)
....++..||..|..+. ....|.+..+... .|+||.+|..||.|..|++|+..+.|.+.+.|..|+.|||.|
T Consensus 52 ~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~en 129 (629)
T KOG1827|consen 52 PLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTEN 129 (629)
T ss_pred HHHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 45667777777777665 3668888888877 999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHH
Q 007876 281 AMLYNPKGQDVHIMAEELSKIFEDTWK 307 (586)
Q Consensus 281 a~~YN~~~s~V~~~A~~L~~~Fe~~~~ 307 (586)
|..||..++.+++++..|+..|.....
T Consensus 130 a~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 130 ARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 999999999999999999999988654
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.61 E-value=6.6e-08 Score=113.80 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 007876 210 QSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQ 289 (586)
Q Consensus 210 k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s 289 (586)
-.+..|++++...++..+|..||+... ++|||.||+.||||.|+++.+..+.|..-++|..|+.|||+|..+||++-+
T Consensus 1264 s~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1264 SILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 356788999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 007876 290 DVHIMAEELSKIFEDTWKKIEAEY 313 (586)
Q Consensus 290 ~V~~~A~~L~~~Fe~~~~~i~~~~ 313 (586)
.+...+..+...+-..|..-+..+
T Consensus 1342 ~~t~~~q~mls~~~~~~~ekedk~ 1365 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKLKEKEDKL 1365 (1563)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHH
Confidence 999999998888877777665543
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.51 E-value=7.9e-08 Score=109.22 Aligned_cols=67 Identities=30% Similarity=0.490 Sum_probs=63.6
Q ss_pred cCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 007876 221 KHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQ 289 (586)
Q Consensus 221 ~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s 289 (586)
.+.++|+|..+|+... .|+||.||+.||||+|+.+++..+.|.+.++|+.|+.+||.||..||...+
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEES 366 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccc
Confidence 4889999999999987 999999999999999999999999999999999999999999999998643
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.15 E-value=4.5e-07 Score=95.63 Aligned_cols=98 Identities=21% Similarity=0.210 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 007876 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~ 287 (586)
.......++..|.+...-..|.-||.... .|+|.+||+.|||+.|++.+++.++|.+..+|..|.+||..||..||..
T Consensus 20 ~~~~~ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~ 97 (418)
T KOG1828|consen 20 DSGDAEHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLH 97 (418)
T ss_pred chhhHHHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcC
Confidence 34455677777777777788888888776 8999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 007876 288 GQDVHIMAEELSKIFEDTWK 307 (586)
Q Consensus 288 ~s~V~~~A~~L~~~Fe~~~~ 307 (586)
.+.++..|++|..+-...+.
T Consensus 98 ~Tv~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 98 PTVPIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred Cccccccccccchhhcchhh
Confidence 99999999999876554433
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.83 E-value=1.2e-05 Score=85.16 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=74.8
Q ss_pred HHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHH
Q 007876 216 LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMA 295 (586)
Q Consensus 216 L~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A 295 (586)
..+|.......+|..++.... .|.|.-+|++|+|++|++.+..++.|.+ .+|..|+.||+.||++||.+...+|.+|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyela 293 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELA 293 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHH
Confidence 345556667889999988776 8999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHH
Q 007876 296 EELSK 300 (586)
Q Consensus 296 ~~L~~ 300 (586)
..+..
T Consensus 294 nk~lh 298 (418)
T KOG1828|consen 294 NKQLH 298 (418)
T ss_pred Hhhhh
Confidence 98877
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.83 E-value=0.00036 Score=75.40 Aligned_cols=92 Identities=29% Similarity=0.502 Sum_probs=82.1
Q ss_pred HHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHH
Q 007876 216 LERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMA 295 (586)
Q Consensus 216 L~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A 295 (586)
+.....+-.+|+|..++.... .|+|+++|..+|++.|.+-++..+.|....+|..|.+++|+||..||.....++..+
T Consensus 272 i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNA 349 (371)
T ss_pred ccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhc
Confidence 333455667999999998877 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007876 296 EELSKIFEDTWKKI 309 (586)
Q Consensus 296 ~~L~~~Fe~~~~~i 309 (586)
..+.++|...+.-+
T Consensus 350 ~~~~~~~~~~~~~~ 363 (371)
T COG5076 350 NVLEDFVIKKTRLI 363 (371)
T ss_pred cchhhhHhhhhhhh
Confidence 99988887766544
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.20 E-value=0.0056 Score=56.78 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007876 249 PMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 249 PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+....+-+.-..+.-+|.+.+..+..++.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999988876555555555556667777777777776654
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=91.28 E-value=0.16 Score=59.19 Aligned_cols=61 Identities=28% Similarity=0.478 Sum_probs=54.7
Q ss_pred cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 007876 246 IKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTW 306 (586)
Q Consensus 246 IK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~Fe~~~ 306 (586)
-.-|..|.-|+.+|++++|++.+.|..||-.|..||.+|...+.-+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 4568999999999999999999999999999999999999998888888888888776544
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.37 E-value=0.63 Score=56.28 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=56.5
Q ss_pred CccCcCCCCcCcC---CCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHhhhhhcccCCCC
Q 007876 225 GWVFNKPVDVKGL---GLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAE--DVRITFSNAMLYNPKG 288 (586)
Q Consensus 225 a~~F~~PVd~~~l---~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~--DvrLIf~Na~~YN~~~ 288 (586)
...|..|++.... .+++|..+|+.+||+...-.+++.+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 6678888874322 25699999999999999999999999999999999 9999999999999975
No 56
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=81.34 E-value=1.5 Score=54.16 Aligned_cols=22 Identities=59% Similarity=0.475 Sum_probs=10.7
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCC
Q 007876 561 SSSDSGS-SSSDSSTGSSCGYRSP 583 (586)
Q Consensus 561 SsS~s~S-sSs~s~s~sss~s~sd 583 (586)
|+|+|+| |+|||+|.||| |||+
T Consensus 442 SsS~SESsS~SDSESESSS-SDSE 464 (1191)
T PF05110_consen 442 SSSESESSSSSDSESESSS-SDSE 464 (1191)
T ss_pred CCCCCCccCcccccccccc-cccc
Confidence 4444443 44566665544 3443
No 57
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=78.84 E-value=1.4 Score=41.62 Aligned_cols=26 Identities=46% Similarity=0.323 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007876 558 SSGSSSDSGSSSSDSSTGSSCGYRSP 583 (586)
Q Consensus 558 sssSsS~s~SsSs~s~s~sss~s~sd 583 (586)
+.+.++.+.+|++||||++++.+++|
T Consensus 134 se~~ss~sSsSssdSdS~s~s~s~s~ 159 (177)
T KOG3116|consen 134 SERRSSYSSSSSSDSDSESASDSDSD 159 (177)
T ss_pred cccccccccCCCCccccccccccCCc
Confidence 33444444445555555544444444
No 58
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=73.67 E-value=2.3 Score=49.16 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHH
Q 007876 101 NREEVRALKRKLA 113 (586)
Q Consensus 101 s~~e~~~l~~rl~ 113 (586)
-.-|.++-+.|+.
T Consensus 376 D~PEVReAAaRFe 388 (1463)
T PHA03308 376 DDPQVREAAAEFH 388 (1463)
T ss_pred CCHHHHHHHHHHh
Confidence 3445555555554
No 59
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=72.98 E-value=2.7 Score=48.65 Aligned_cols=8 Identities=38% Similarity=0.285 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 007876 477 ETLWELDR 484 (586)
Q Consensus 477 ~TLreL~r 484 (586)
-||+.|+.
T Consensus 1196 vtlrrlrd 1203 (1463)
T PHA03308 1196 VTLRRLRD 1203 (1463)
T ss_pred hhHHHHHH
Confidence 34444433
No 60
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=70.95 E-value=2.6 Score=47.39 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=12.6
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007876 471 IDTFDPETLWELDRFVTN 488 (586)
Q Consensus 471 Id~L~~~TLreL~ryV~~ 488 (586)
|.-+...-||.|-+|...
T Consensus 535 Ihr~EtnkLRnlakffah 552 (739)
T KOG2140|consen 535 IHRYETNKLRNLAKFFAH 552 (739)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 556666777777777764
No 61
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=58.62 E-value=5.5 Score=47.05 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHhhh
Q 007876 230 KPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLY--------------K----------TPRE------FAEDVRITFS 279 (586)
Q Consensus 230 ~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y--------------~----------s~~e------F~~DvrLIf~ 279 (586)
-++|... .|.|..+...|.+|+|++..|.+..| . ++.+ ...-+++|-.
T Consensus 88 ~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 4566655 78899999999999999999998877 2 2233 6677889999
Q ss_pred hhcccCCCCCHHHHHHHHHHH
Q 007876 280 NAMLYNPKGQDVHIMAEELSK 300 (586)
Q Consensus 280 Na~~YN~~~s~V~~~A~~L~~ 300 (586)
||+.++.+++ +++-++.+.+
T Consensus 166 at~~~akPgt-mvqkmk~ikr 185 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKR 185 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHH
Confidence 9999999999 4444344333
No 62
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=54.55 E-value=1.9 Score=49.71 Aligned_cols=75 Identities=11% Similarity=-0.060 Sum_probs=66.5
Q ss_pred ccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHH
Q 007876 226 WVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIF 302 (586)
Q Consensus 226 ~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~F 302 (586)
..|..-++.+. +++||.+++-+|-++-+.+++..++|.....|..|+.++|.|+..|+.....++..+..|.+.+
T Consensus 214 er~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 34555555555 8999999999999999999999999999999999999999999999999999999998887654
No 63
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=53.77 E-value=33 Score=30.24 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 007876 261 KNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEY 313 (586)
Q Consensus 261 ~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~ 313 (586)
...|.|..-|...|..|-.....++..+..+..||..+.+.|++.|.++..-+
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~~l 55 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNLLL 55 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34688888888888888777777777789999999999999999999765443
No 64
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=53.34 E-value=10 Score=47.05 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=5.0
Q ss_pred HHHHHHhhC
Q 007876 449 VVQIIKKRN 457 (586)
Q Consensus 449 VV~IIq~~~ 457 (586)
|=+||++..
T Consensus 329 veeIlrEmt 337 (1191)
T PF05110_consen 329 VEEILREMT 337 (1191)
T ss_pred HHHHHHHHh
Confidence 455666644
No 65
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=53.30 E-value=10 Score=40.29 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=8.9
Q ss_pred CCCCHHHHHHHHHHhhhh
Q 007876 263 LYKTPREFAEDVRITFSN 280 (586)
Q Consensus 263 ~Y~s~~eF~~DvrLIf~N 280 (586)
.|.-+.=|.+|+-.+..+
T Consensus 157 dY~VPk~F~dDlF~y~g~ 174 (407)
T KOG2130|consen 157 DYSVPKYFRDDLFQYLGE 174 (407)
T ss_pred hcCcchhhhHHHHHhcCc
Confidence 455555555555444443
No 66
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=51.19 E-value=9.8 Score=43.08 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=8.0
Q ss_pred HHhhhccCCCCCcc
Q 007876 509 EACHNIQDSNMEPI 522 (586)
Q Consensus 509 e~~~~~~~~~~~~~ 522 (586)
.+..++.+...||+
T Consensus 597 ~L~~RL~dptl~~~ 610 (739)
T KOG2140|consen 597 KLNERLNDPTLQPK 610 (739)
T ss_pred HHHHHhcCcchhhh
Confidence 34455666666655
No 67
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=44.29 E-value=34 Score=38.75 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.0
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHHH
Q 007876 464 DDEIEVDIDTFDPETLWELDRFVTN 488 (586)
Q Consensus 464 ~dEIEIDId~L~~~TLreL~ryV~~ 488 (586)
+.++|||++.|++++...|.+--..
T Consensus 197 D~Dve~D~~~ld~eq~~tlnkqg~~ 221 (653)
T KOG2548|consen 197 DEDVEFDSNDLDDEQMETLNKQGEF 221 (653)
T ss_pred ccccccccccCCHHHHHHHHhhhhh
Confidence 6679999999999999999765443
No 68
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=40.12 E-value=52 Score=37.65 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=16.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhhh
Q 007876 467 IEVDIDTFDPETLWELDRFVTNYNKILS 494 (586)
Q Consensus 467 IEIDId~L~~~TLreL~ryV~~~kK~~~ 494 (586)
=|+++|.+.-=+-..=..|+..|.+..+
T Consensus 38 eefn~dd~n~wm~ldd~nflntwtknvs 65 (782)
T PF07218_consen 38 EEFNVDDINSWMKLDDANFLNTWTKNVS 65 (782)
T ss_pred cccCcccchhcccccHHHHHHHHhhccc
Confidence 3556666554444444678888877655
No 69
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=39.04 E-value=29 Score=25.96 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH
Q 007876 111 KLASELEQVTSLVKR 125 (586)
Q Consensus 111 rl~~el~qvr~l~kr 125 (586)
|++.|||.|..++||
T Consensus 30 rfraelekvkl~~k~ 44 (48)
T PF10872_consen 30 RFRAELEKVKLMQKR 44 (48)
T ss_pred hHHHHHHHHHHHHHh
Confidence 578899999999987
No 70
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=34.55 E-value=29 Score=31.48 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=48.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhCCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHhh
Q 007876 422 DKRDMTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKIL 493 (586)
Q Consensus 422 ~~rpMT~eEK~~Ls~~I~~Lp~ekL~~VV~IIq~~~p~l~~~~dEIEIDId~L~~~TLreL~ryV~~~kK~~ 493 (586)
.++||.....++.-..+.. +...+.++.++....-....++++++.+.....++|.+..|++.|.+..
T Consensus 42 IK~PMDL~ti~~kl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd05494 42 IKRPMSFGTKVNNIVETGA----RDLEDLQIVQEDPADKQIDDEGRRSPSNIYAVEALEQLIVFQCKQVKGL 109 (114)
T ss_pred cCCCCChHHHHHHHHcccc----ccccccccccccccccccccccccCcccccchhhcccchHHHHhhhhhh
Confidence 5678999987776655533 4445556655543322224678899999999999999999999886653
No 71
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=32.86 E-value=35 Score=36.50 Aligned_cols=10 Identities=60% Similarity=0.710 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 007876 107 ALKRKLASEL 116 (586)
Q Consensus 107 ~l~~rl~~el 116 (586)
+|++.-+-||
T Consensus 19 ~~kr~arpel 28 (407)
T KOG2130|consen 19 ELKRKARPEL 28 (407)
T ss_pred HHHHhcChhh
Confidence 3443333333
No 72
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=30.19 E-value=64 Score=26.66 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 007876 253 GTVKARLSKNLYKTPREFAEDVRITFS 279 (586)
Q Consensus 253 ~TIk~KL~~~~Y~s~~eF~~DvrLIf~ 279 (586)
.-|+..+..|.|.+..++++|...++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999998888766543
No 73
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=29.13 E-value=52 Score=28.60 Aligned_cols=63 Identities=13% Similarity=0.316 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHhc-CCChhhHHHHHHHHHhhCCCCCCCC--CcEEEeCCCC-CHHHHHHHHHHHH
Q 007876 425 DMTYEEKQRLSMNLQ-ELPSDKLDHVVQIIKKRNPVLSQQD--DEIEVDIDTF-DPETLWELDRFVT 487 (586)
Q Consensus 425 pMT~eEK~~Ls~~I~-~Lp~ekL~~VV~IIq~~~p~l~~~~--dEIEIDId~L-~~~TLreL~ryV~ 487 (586)
-||.+|-.+++..-+ .|..++...|++|++....+..+++ ..+-.+|... +|.|..+...+..
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~ 80 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFE 80 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 499999999999988 6889999999999999877766421 1222233333 4555555444443
No 74
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=23.06 E-value=1.3e+02 Score=32.91 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=35.3
Q ss_pred CCChhhHHHHHHHHHhhCCCCCCCCCcEEEeCCCCCHHHHHHHHHH
Q 007876 440 ELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRF 485 (586)
Q Consensus 440 ~Lp~ekL~~VV~IIq~~~p~l~~~~dEIEIDId~L~~~TLreL~ry 485 (586)
-|+.+.|.+++++|+++-|...+.+--+|.+.+.++.+-|..|.+.
T Consensus 86 ~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~ 131 (394)
T PRK08898 86 LLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRAS 131 (394)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999876543334557777788988888777665
No 75
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=22.53 E-value=76 Score=26.96 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhcCCChhhHHHHHHHHHhh
Q 007876 426 MTYEEKQRLSMNLQELPSDKLDHVVQIIKKR 456 (586)
Q Consensus 426 MT~eEK~~Ls~~I~~Lp~ekL~~VV~IIq~~ 456 (586)
+|.+||.+|+.+|.++ .|-|+.+|++-.+.
T Consensus 3 Vt~~EkeQLS~AID~m-nEGLD~fI~lYNeS 32 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRM-NEGLDTFIQLYNES 32 (84)
T ss_pred CchHHHHHHHHHHHHH-HhhHHHHHHHHccc
Confidence 7899999999999988 56677777776543
No 76
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=21.03 E-value=86 Score=25.62 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=12.8
Q ss_pred HHHHHhcCCChhhHHHHHHHH
Q 007876 433 RLSMNLQELPSDKLDHVVQII 453 (586)
Q Consensus 433 ~Ls~~I~~Lp~ekL~~VV~II 453 (586)
+|-..|+.||.+....|+++|
T Consensus 4 ~l~~~i~~LP~~~~~Evldfi 24 (66)
T PF10047_consen 4 ELLEKIQQLPEELQQEVLDFI 24 (66)
T ss_pred HHHHHHHHCCHHHHHHHHHHH
Confidence 455566666666666666554
No 77
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.40 E-value=68 Score=24.28 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 007876 108 LKRKLASELEQVTSLV 123 (586)
Q Consensus 108 l~~rl~~el~qvr~l~ 123 (586)
=-+||..||.++|+|.
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3467888888888764
No 78
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=20.31 E-value=81 Score=37.90 Aligned_cols=34 Identities=50% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCCCccccccCCC--------CCCCCCCCCCCCCCCCCCCCC
Q 007876 539 TSSPVLEEKHGDK--------ANESSSSSGSSSDSGSSSSDS 572 (586)
Q Consensus 539 ~~~P~~~ek~~~~--------~s~ssssssSsS~s~SsSs~s 572 (586)
..-||.-...+.| .+++||||||||+|.|||..|
T Consensus 1792 dsvpvrrrsgaancggrwmisagrssssssssssssssspss 1833 (2033)
T PHA03309 1792 DSVPVRRRSGAANCGGRWMISAGRSSSSSSSSSSSSSSSPSS 1833 (2033)
T ss_pred cccceeecccccccCcceeeecCcccCcccccccccCCCCCC
Done!