Query 007877
Match_columns 586
No_of_seqs 143 out of 230
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_S AP-2 complex subunit si 96.5 0.02 6.8E-07 52.2 11.5 81 145-230 3-86 (142)
2 1w63_Q Adapter-related protein 96.1 0.055 1.9E-06 50.4 12.1 83 145-230 3-86 (158)
3 3tjz_C Coatomer subunit zeta-1 94.2 0.38 1.3E-05 44.7 11.3 72 145-221 14-90 (153)
4 1w63_M Adaptor-related protein 93.7 0.32 1.1E-05 51.8 11.0 82 145-229 4-85 (423)
5 2vgl_M AP-2 complex subunit MU 91.7 0.9 3.1E-05 48.5 11.3 80 145-230 3-84 (435)
6 2j3t_C Trafficking protein par 89.2 4.2 0.00014 37.2 11.9 82 146-229 5-101 (145)
7 2hz5_A Dynein light chain 2A, 86.5 3.1 0.00011 36.5 8.8 69 145-214 28-104 (106)
8 3l7h_A RE64145P, roadblock; LC 81.7 9.8 0.00033 32.8 9.7 69 145-214 19-95 (97)
9 3cue_C Transport protein parti 78.4 6.1 0.00021 36.8 7.9 83 146-230 5-108 (159)
10 1j3w_A Giding PROTEIN-MGLB; gl 70.9 44 0.0015 31.0 11.7 97 142-238 27-135 (163)
11 2j3w_A Sedlin, trafficking pro 56.7 71 0.0024 28.7 10.0 103 146-258 8-125 (142)
12 2nut_C Vesicle-trafficking pro 48.0 1.4E+02 0.0048 27.9 11.0 77 154-230 14-94 (196)
13 3leq_A Uncharacterized protein 45.3 1.5E+02 0.0052 26.0 10.1 95 144-238 19-122 (126)
14 3cue_A Transport protein parti 44.3 1.7E+02 0.0059 28.7 11.1 36 146-181 5-47 (219)
15 2lic_A Vitellogenin; lipid tra 41.6 12 0.00042 25.9 1.7 16 1-16 14-29 (35)
16 2fh5_A Signal recognition part 40.0 98 0.0034 29.6 8.4 88 145-236 12-103 (185)
17 2vx8_A Nucleoporin-like protei 30.3 2.6E+02 0.009 25.9 9.6 83 145-231 46-128 (169)
18 4b93_A Vesicle-associated memb 26.9 2.3E+02 0.0078 26.5 8.6 62 170-232 26-87 (189)
19 4afi_A AP-3 complex subunit de 22.7 2.8E+02 0.0094 25.9 8.2 58 172-230 80-137 (173)
20 1vet_B P14, late endosomal/lys 22.0 4E+02 0.014 23.3 12.0 89 144-232 19-115 (125)
No 1
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.54 E-value=0.02 Score=52.19 Aligned_cols=81 Identities=10% Similarity=0.224 Sum_probs=56.5
Q ss_pred ceEEEecCCCcceeecCCC---chhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHH
Q 007877 145 KHFFILSHSGKPIYSRYGD---EHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGd---E~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L 221 (586)
+-+||++..|||+.+||=. ++.-..+...+...+. ...+..--.+..+++++|+...+.||+|++++.++++-.+
T Consensus 3 ~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~--~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT--VRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp EEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH--TCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred EEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh--cCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 4689999999999999764 3333333333333333 1122234467789999999999999999999988887554
Q ss_pred HHHHHHHHH
Q 007877 222 RGQLELLYG 230 (586)
Q Consensus 222 ~~QL~~Ly~ 230 (586)
|++||.
T Consensus 81 ---le~L~~ 86 (142)
T 2vgl_S 81 ---LEAIHN 86 (142)
T ss_dssp ---HHHHHH
T ss_pred ---HHHHHH
Confidence 566654
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.11 E-value=0.055 Score=50.36 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=56.1
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCC-CceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHHHH
Q 007877 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGK-DRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRG 223 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~~ls~~~gvlqAIvSf~e~~~-d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L~~ 223 (586)
+-+||++..|||+.+||=.......-..++..+...+...+ +.--.+..+++++|+...+.||+|++++.++++-.+
T Consensus 3 ~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~-- 80 (158)
T 1w63_Q 3 RFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT-- 80 (158)
T ss_dssp EEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH--
Confidence 46899999999999997433322211122233333333322 223467789999999999999999999988887554
Q ss_pred HHHHHHH
Q 007877 224 QLELLYG 230 (586)
Q Consensus 224 QL~~Ly~ 230 (586)
|++||.
T Consensus 81 -le~L~~ 86 (158)
T 1w63_Q 81 -LELIHR 86 (158)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 666664
No 3
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=94.20 E-value=0.38 Score=44.66 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=50.4
Q ss_pred ceEEEecCCCcceeecCCCch-----hhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHH
Q 007877 145 KHFFILSHSGKPIYSRYGDEH-----KLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYE 219 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~-----~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~ 219 (586)
+-+||++..|||+.++|=..+ +-..+..-+...+ .. .+ -..+..+++++||-..+-||+|++++.+|++.
T Consensus 14 ~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~---~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 14 KAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT---HR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp EEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH---SS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred eEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH---hC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 579999999999999964321 1122332222222 22 22 24677799999999999999999999998886
Q ss_pred HH
Q 007877 220 SL 221 (586)
Q Consensus 220 ~L 221 (586)
.+
T Consensus 89 ~i 90 (153)
T 3tjz_C 89 ML 90 (153)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 4
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.68 E-value=0.32 Score=51.80 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=52.8
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHHHHH
Q 007877 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQ 224 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L~~Q 224 (586)
+-+||++..||++.+||=..+.-.+....+...+.--.+.++.--.+..+++++|+....-|||||+++.++++.. -
T Consensus 4 ~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~---~ 80 (423)
T 1w63_M 4 SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL---V 80 (423)
T ss_dssp CEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH---H
T ss_pred EEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH---H
Confidence 5689999999999999744321112122222222111121233346778999999999999999999998877744 3
Q ss_pred HHHHH
Q 007877 225 LELLY 229 (586)
Q Consensus 225 L~~Ly 229 (586)
|++||
T Consensus 81 le~L~ 85 (423)
T 1w63_M 81 FSFLY 85 (423)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44554
No 5
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=91.74 E-value=0.9 Score=48.47 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=53.3
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcC--CCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHHH
Q 007877 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENG--KDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLR 222 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~~ls~~~gvlqAIvSf~e~~--~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L~ 222 (586)
+-+||++..||++.+||=..+.-. +.+.++...+... .+.--.+..+++++|+....-|||||+++.++++..
T Consensus 3 ~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~-- 77 (435)
T 2vgl_M 3 GGLFIYNHKGEVLISRVYRDDIGR---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM-- 77 (435)
T ss_dssp CEEEEECTTCCEEEEEECSSSCCH---HHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH--
T ss_pred EEEEEECCCCCEEEEEecCCCCCh---hHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH--
Confidence 468999999999999975432111 2223322222221 123346778999999999999999999998887744
Q ss_pred HHHHHHHH
Q 007877 223 GQLELLYG 230 (586)
Q Consensus 223 ~QL~~Ly~ 230 (586)
-|++||.
T Consensus 78 -~le~L~~ 84 (435)
T 2vgl_M 78 -VFEFLYK 84 (435)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4455543
No 6
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=89.20 E-value=4.2 Score=37.18 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=58.1
Q ss_pred eEEEecCCCcceeec-CCC--------chhhhhHHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEE-ecCCEEEEE
Q 007877 146 HFFILSHSGKPIYSR-YGD--------EHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFL-IKGPIYLVC 210 (586)
Q Consensus 146 h~FIlS~AGKPIYSr-yGd--------E~~ls~~~gvlqAIvSf~e~-----~~d~L~~I~ag~~~~VFL-~r~PL~LVa 210 (586)
.|+|+..+|.|||.+ ++. ++..--+.|++.++-.+++. ..+.++.+..++.++.+. .-+.+-+|.
T Consensus 5 ~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl 84 (145)
T 2j3t_C 5 NLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVM 84 (145)
T ss_dssp EEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEE
Confidence 488999999999987 221 34444457888888888774 346789999888877644 445688888
Q ss_pred EcCCCCCHHHHHHHHHHHH
Q 007877 211 ISCTEEPYESLRGQLELLY 229 (586)
Q Consensus 211 VS~~~Es~~~L~~QL~~Ly 229 (586)
++...++. ++.-|.-||
T Consensus 85 ~td~~~~~--i~~~l~~iy 101 (145)
T 2j3t_C 85 NTDLGVGP--IRDVLHHIY 101 (145)
T ss_dssp EECTTCCC--CHHHHHHHH
T ss_pred EecCCcch--HHHHHHHHH
Confidence 88765432 566666666
No 7
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=86.46 E-value=3.1 Score=36.54 Aligned_cols=69 Identities=14% Similarity=0.344 Sum_probs=51.0
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHH----H--cCCCceEE--EEeCCeEEEEEecCCEEEEEEcCC
Q 007877 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFV----E--NGKDRIKL--VRAGKHQVVFLIKGPIYLVCISCT 214 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~~ls~~~gvlqAIvSf~----e--~~~d~L~~--I~ag~~~~VFL~r~PL~LVaVS~~ 214 (586)
+=++|+...|.||-|. +|.+...-|.|.|+.++... . +..|+|+. |+..++.++...-+-.+||.|-+.
T Consensus 28 ~G~iIln~~G~pIrSt-~d~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimIapd~~~~LiVvQ~~ 104 (106)
T 2hz5_A 28 QGIIVVNTEGIPIKST-MDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIVIQNP 104 (106)
T ss_dssp EEEEEECTTCCEEEES-SCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC---CEEEEEECC
T ss_pred eEEEEEcCCCCeEEEe-cCchHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEEEecCCEEEEEEecC
Confidence 4589999999999986 67777778888888888643 3 35688876 567888888877777777777654
No 8
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=81.72 E-value=9.8 Score=32.83 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=52.7
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHH------cCCCceEE--EEeCCeEEEEEecCCEEEEEEcCC
Q 007877 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVE------NGKDRIKL--VRAGKHQVVFLIKGPIYLVCISCT 214 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~~ls~~~gvlqAIvSf~e------~~~d~L~~--I~ag~~~~VFL~r~PL~LVaVS~~ 214 (586)
.-++|+...|.||-|.. |.+...-|.+.++.++...+ +..|+|.+ |++.+|.+......-..|+.|-+.
T Consensus 19 ~G~iI~n~~G~pirst~-d~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimIaPd~~f~liVvQ~~ 95 (97)
T 3l7h_A 19 VGTIVVNNEGIPVKSTL-DNTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNP 95 (97)
T ss_dssp EEEEEEETTSCEEEESS-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEEETTEEEEEEEC-
T ss_pred eEEEEECCCCCEeEEeC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEEEcCCCEEEEEEecC
Confidence 35799999999998864 55666678888888876443 35588886 567889999888888888888654
No 9
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=78.39 E-value=6.1 Score=36.76 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=58.4
Q ss_pred eEEEecCCCcceeec-C--------C------CchhhhhHHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEEec-C
Q 007877 146 HFFILSHSGKPIYSR-Y--------G------DEHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFLIK-G 204 (586)
Q Consensus 146 h~FIlS~AGKPIYSr-y--------G------dE~~ls~~~gvlqAIvSf~e~-----~~d~L~~I~ag~~~~VFL~r-~ 204 (586)
.|+|+..+|.|||.+ + | +++..--+.|++.++-.+++. ..|.+..+.+++.++.+..- +
T Consensus 5 ~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~T 84 (159)
T 3cue_C 5 SFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTAS 84 (159)
T ss_dssp EEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSS
T ss_pred EEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCC
Confidence 589999999999976 3 1 133344467788888888874 23679999999988776554 4
Q ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007877 205 PIYLVCISCTEEPYESLRGQLELLYG 230 (586)
Q Consensus 205 PL~LVaVS~~~Es~~~L~~QL~~Ly~ 230 (586)
-+-+|.++...++ .++.-|.-||.
T Consensus 85 giKFvl~td~~~~--~i~~~l~~iy~ 108 (159)
T 3cue_C 85 GLWFVLLSDFKQQ--SYTQVLQYIYS 108 (159)
T ss_dssp CCEEEEECCSSSS--CTHHHHHHHHH
T ss_pred CCEEEEEeCCCcc--hHHHHHHHHHH
Confidence 6889999875533 35555666664
No 10
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=70.93 E-value=44 Score=31.04 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=63.6
Q ss_pred ccCceEEEecCCCcceee-----cCC--CchhhhhHHHHHHHHHHHHH-c-CCCceE--EEEeCCeEEEEEecCC-EEEE
Q 007877 142 KRKKHFFILSHSGKPIYS-----RYG--DEHKLAGFSATLQAIISFVE-N-GKDRIK--LVRAGKHQVVFLIKGP-IYLV 209 (586)
Q Consensus 142 ~~~Kh~FIlS~AGKPIYS-----ryG--dE~~ls~~~gvlqAIvSf~e-~-~~d~L~--~I~ag~~~~VFL~r~P-L~LV 209 (586)
..-+|.+|+|.-|-+|-+ .-+ |.+.++..++.+.++..-.. . +..+++ .|...+..+++..=|+ -+|+
T Consensus 27 ~Gv~~avlvs~DGl~ia~~~~~~~~~~~d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~ 106 (163)
T 1j3w_A 27 TGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLV 106 (163)
T ss_dssp HCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEE
T ss_pred CCceEEEEEcCCCCEEEeecccccCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEE
Confidence 356899999999999998 433 55556665555555543221 1 223343 3444555555555565 7888
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHHhHhhH
Q 007877 210 CISCTEEPYESLRGQLELLYGQMILILTK 238 (586)
Q Consensus 210 aVS~~~Es~~~L~~QL~~Ly~qilSiLT~ 238 (586)
.+...+-..-.++.++.-+=.+|-.+|+.
T Consensus 107 Vla~~~a~lG~v~~~m~~~v~~l~~~L~~ 135 (163)
T 1j3w_A 107 LVFDETAPLGKVKLHGKRASEALARIAEE 135 (163)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 88887777888888888777777666654
No 11
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=56.75 E-value=71 Score=28.71 Aligned_cols=103 Identities=15% Similarity=0.251 Sum_probs=60.0
Q ss_pred eEEEecCCCcceeec-CCCc-------hhhhhHHHHHHHHHHHHHc-----CCCceEEE-EeCCeEEE-EEecCCEEEEE
Q 007877 146 HFFILSHSGKPIYSR-YGDE-------HKLAGFSATLQAIISFVEN-----GKDRIKLV-RAGKHQVV-FLIKGPIYLVC 210 (586)
Q Consensus 146 h~FIlS~AGKPIYSr-yGdE-------~~ls~~~gvlqAIvSf~e~-----~~d~L~~I-~ag~~~~V-FL~r~PL~LVa 210 (586)
.|.|+...|.|||.+ ++.. +.---+.+++.+...+++. .+-.+..+ +..+.++. |..-+.+-+|.
T Consensus 8 ~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfvl 87 (142)
T 2j3w_A 8 YFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIM 87 (142)
T ss_dssp EEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEEE
T ss_pred EEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEEE
Confidence 588999999999977 4442 2211234678888887764 12233332 23444443 44445577777
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHHhHhhHHHHHHhhhCCCCCcccCCCC
Q 007877 211 ISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGG 258 (586)
Q Consensus 211 VS~~~Es~~~L~~QL~~Ly~qilSiLT~~l~r~f~kr~NyDLRrlL~g 258 (586)
+.... .+..++.-|.-+|..-+- ..- +|=|.+-.-+..
T Consensus 88 ~~d~~-~~~~i~~~~~~iy~~Y~~--------~v~-NPfy~~~~pI~s 125 (142)
T 2j3w_A 88 LHDVR-QEDGIKNFFTDVYDLYIK--------FAM-NPFYEPNSPIRS 125 (142)
T ss_dssp EESSC-CHHHHHHHHHHHHHHHHH--------HHH-STTCCTTCCCCC
T ss_pred EeCCC-CcHHHHHHHHHHHHHHHH--------Hhc-CCCCCCCCceec
Confidence 76542 467788888888853222 222 677766555543
No 12
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=47.99 E-value=1.4e+02 Score=27.95 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=51.4
Q ss_pred CcceeecCCCc----hhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHHHHHHHHHH
Q 007877 154 GKPIYSRYGDE----HKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLY 229 (586)
Q Consensus 154 GKPIYSryGdE----~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L~~QL~~Ly 229 (586)
|.|+....-.+ .++..+-.++..|+..+....+.-.++..|++.|.|+..+.|+++||+...-|...-..-|+-|.
T Consensus 14 ~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~ 93 (196)
T 2nut_C 14 GLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 93 (196)
T ss_dssp CCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHH
Confidence 77777654321 13445556666666666543445567888999999999999999999987767655444444444
Q ss_pred H
Q 007877 230 G 230 (586)
Q Consensus 230 ~ 230 (586)
.
T Consensus 94 ~ 94 (196)
T 2nut_C 94 S 94 (196)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=45.35 E-value=1.5e+02 Score=25.98 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=56.4
Q ss_pred CceEEEecCCCcceeecCC-Cc---hhhhhHHHHHHHHHHHHH--cCCCceE--EEEeCCeEEEEEecCC-EEEEEEcCC
Q 007877 144 KKHFFILSHSGKPIYSRYG-DE---HKLAGFSATLQAIISFVE--NGKDRIK--LVRAGKHQVVFLIKGP-IYLVCISCT 214 (586)
Q Consensus 144 ~Kh~FIlS~AGKPIYSryG-dE---~~ls~~~gvlqAIvSf~e--~~~d~L~--~I~ag~~~~VFL~r~P-L~LVaVS~~ 214 (586)
=+|..++|.-|-||-+..+ +. +.++..++.++++..-.. -+.++++ .|+..+..+++..=++ .+|+.+...
T Consensus 19 v~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~ 98 (126)
T 3leq_A 19 VDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQ 98 (126)
T ss_dssp EEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEEEECT
T ss_pred ceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCC
Confidence 4689999999999998764 32 456655555554433211 1233443 3455566666666665 888888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhHhhH
Q 007877 215 EEPYESLRGQLELLYGQMILILTK 238 (586)
Q Consensus 215 ~Es~~~L~~QL~~Ly~qilSiLT~ 238 (586)
+-....++.++.-+=.+|-..||.
T Consensus 99 ~a~lG~v~~em~~~v~ri~~~L~~ 122 (126)
T 3leq_A 99 GADVGVVAYQMNMLVKKIGEHLSA 122 (126)
T ss_dssp TCCHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 778888888888877777666653
No 14
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=44.25 E-value=1.7e+02 Score=28.68 Aligned_cols=36 Identities=31% Similarity=0.613 Sum_probs=23.4
Q ss_pred eEEEecCCCcceeec--CCCchhhhh-----HHHHHHHHHHHH
Q 007877 146 HFFILSHSGKPIYSR--YGDEHKLAG-----FSATLQAIISFV 181 (586)
Q Consensus 146 h~FIlS~AGKPIYSr--yGdE~~ls~-----~~gvlqAIvSf~ 181 (586)
.++|+..+|.-||.| +.+..++.+ +.|++..+-.+.
T Consensus 5 sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~ 47 (219)
T 3cue_A 5 TILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIA 47 (219)
T ss_dssp EEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhHHHHHHH
Confidence 589999999999988 333333322 556666554443
No 15
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=41.58 E-value=12 Score=25.88 Aligned_cols=16 Identities=69% Similarity=0.536 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCccccc
Q 007877 1 MSTSSSSPSSDEELIF 16 (586)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (586)
+|+||||+|++++.++
T Consensus 14 istssssissseendf 29 (35)
T 2lic_A 14 ISTSSSSISSSEENDF 29 (35)
T ss_dssp SCSCSSCCSTTCSCSS
T ss_pred cccccccccccccccc
Confidence 4789999998887654
No 16
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=39.96 E-value=98 Score=29.60 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=54.2
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHH--HHHcCCCceEEEEeCCe--EEEEEecCCEEEEEEcCCCCCHHH
Q 007877 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIIS--FVENGKDRIKLVRAGKH--QVVFLIKGPIYLVCISCTEEPYES 220 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~~ls~~~gvlqAIvS--f~e~~~d~L~~I~ag~~--~~VFL~r~PL~LVaVS~~~Es~~~ 220 (586)
.||.|||..|==+|+.-|... .+...+.++|. +.|+...+ .....++. +..|.+.=-|+||+|=..--....
T Consensus 12 D~~~IfTkGGvVLWs~~~~~~---~~~~~IN~LIr~VlLEER~~~-~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 12 DFFTIFSKGGLVLWCFQGVSD---SCTGPVNALIRSVLLQERGGN-NSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SEEEEEETTSBEEEEEBTTTB---SCCCHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred eEEEEEeCCeEEEEeecCCcc---cccchHHHHHHHhhhccccCC-CceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 589999999999999434322 23457899999 55653321 13444554 788888889999999765444444
Q ss_pred HHHHHHHHHHHHHhHh
Q 007877 221 LRGQLELLYGQMILIL 236 (586)
Q Consensus 221 L~~QL~~Ly~qilSiL 236 (586)
+-.-|+-+...++...
T Consensus 88 iD~LL~~v~~~Fv~~Y 103 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKY 103 (185)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 17
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=30.27 E-value=2.6e+02 Score=25.88 Aligned_cols=83 Identities=10% Similarity=0.096 Sum_probs=53.4
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHHHHH
Q 007877 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQ 224 (586)
Q Consensus 145 Kh~FIlS~AGKPIYSryGdE~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L~~Q 224 (586)
-.|-+++..|.+++..-.... .+-.+..+|+..+.. .+.-..+..|+..|.|+..+.|++|||+...-+....-.-
T Consensus 46 ilYa~VaRG~~VLae~t~~~g---nf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~f 121 (169)
T 2vx8_A 46 ILFAVVARGTTILAKHAWCGG---NFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 121 (169)
T ss_dssp CCEEEEEETTEEEEEEESSCB---SHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred eEEEEEEcCCEEEEEeccCCC---CHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHH
Confidence 456677777777775322221 333455566555543 2345678889999999999999999999876665544444
Q ss_pred HHHHHHH
Q 007877 225 LELLYGQ 231 (586)
Q Consensus 225 L~~Ly~q 231 (586)
|+-|...
T Consensus 122 LedI~~e 128 (169)
T 2vx8_A 122 LNEVKKR 128 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 18
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=26.94 E-value=2.3e+02 Score=26.50 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHHHHHHHHHHHHH
Q 007877 170 FSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQM 232 (586)
Q Consensus 170 ~~gvlqAIvSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L~~QL~~Ly~qi 232 (586)
|..+...|+..+.. .+.-.++..|++.|.|+..+.|+++||+..+-|...--.-|+=|....
T Consensus 26 f~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF 87 (189)
T 4b93_A 26 FLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRF 87 (189)
T ss_dssp HHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHH
Confidence 33444445444432 344567889999999999999999999987666554444444444333
No 19
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=22.75 E-value=2.8e+02 Score=25.88 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007877 172 ATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYG 230 (586)
Q Consensus 172 gvlqAIvSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L~~QL~~Ly~ 230 (586)
.+...|+..... ++.-.++..|++.|.|+.++.++++||+...-+...--.-|+-|..
T Consensus 80 ~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~ 137 (173)
T 4afi_A 80 EVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 137 (173)
T ss_dssp HHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHH
Confidence 344444444333 2445678889999999999999999999876665544444444433
No 20
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=22.04 E-value=4e+02 Score=23.28 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=55.1
Q ss_pred CceEEEecCCCcceeecCC---CchhhhhHHHHHHHHHHHHHc---CCCceEE--EEeCCeEEEEEecCCEEEEEEcCCC
Q 007877 144 KKHFFILSHSGKPIYSRYG---DEHKLAGFSATLQAIISFVEN---GKDRIKL--VRAGKHQVVFLIKGPIYLVCISCTE 215 (586)
Q Consensus 144 ~Kh~FIlS~AGKPIYSryG---dE~~ls~~~gvlqAIvSf~e~---~~d~L~~--I~ag~~~~VFL~r~PL~LVaVS~~~ 215 (586)
=+|.+++|.-|-+|=+.-+ |.+.++.+++.++.+..-... .+++++. |...+..+.+..=+-.+|+.++..+
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 3699999999999986544 334566666655555443322 2244543 4455555444444678888888777
Q ss_pred CCHHHHHHHHHHHHHHH
Q 007877 216 EPYESLRGQLELLYGQM 232 (586)
Q Consensus 216 Es~~~L~~QL~~Ly~qi 232 (586)
-....++.+..-+-.+|
T Consensus 99 a~lGlv~~~m~~lv~~L 115 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYL 115 (125)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 67777777666554443
Done!