Citrus Sinensis ID: 007878
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 586 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WSH6 | 684 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.847 | 0.692 | 0.0 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.979 | 0.755 | 0.383 | 1e-137 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.982 | 0.909 | 0.413 | 1e-136 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.998 | 0.587 | 0.433 | 1e-135 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.986 | 0.583 | 0.403 | 1e-131 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.994 | 0.720 | 0.402 | 1e-130 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.994 | 0.840 | 0.389 | 1e-128 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.996 | 0.852 | 0.390 | 1e-126 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.996 | 0.656 | 0.383 | 1e-126 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.996 | 0.707 | 0.390 | 1e-126 |
| >sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/586 (69%), Positives = 482/586 (82%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRRE + PNDFTFPC FKA ++L +PVTGKQ+HALA+K G+I DVFVGCSAFDMY KT L
Sbjct: 99 MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DDA K+FDE+PERNL TWNA+ISN+V GRP+ AI+AFI RR G P+ ITFCAFLNA
Sbjct: 159 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CSD L LG QLHG ++RSGFD +VSVCNGL+DFYGKC ++ ++++F + KN VSW
Sbjct: 219 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSW 278
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
CS++ YVQN+E+E ++L +R++ VE DFMISSVLSACA +AGLELGRS+HA AVK
Sbjct: 279 CSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK 338
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACVE IFVGSALVDMYGKCG I+D+E AF++MPE+NLV N++IGGYAHQG DMAL+
Sbjct: 339 ACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALAL 398
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM C PNY+T V +LSACSRAGAVE GMKIF SM YGI+PGAEHY+C+VD+
Sbjct: 399 FEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDM 458
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V+RAYE IK+MP++PTISVWGAL NACR++GKP+LG +AA+NLFKLDP DSGNH
Sbjct: 459 LGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNH 518
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSN FAA GRW EA+ VR+E+K VGIKKGAG SWI+VKN++H FQAKD SH N EIQ
Sbjct: 519 VLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQ 578
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
L KLR EM+AAGY PD +LYD+EEEEK EV HHSEK+ALAFGL+++P VPIRIT
Sbjct: 579 TTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRIT 638
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHS FKF+SG V RE+IVRDNNRFHRF DG CSC DYW
Sbjct: 639 KNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
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Acts as a regulatory factor of isoprenoid biosynthesis. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/652 (38%), Positives = 363/652 (55%), Gaps = 78/652 (11%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
P+ P LFK + L GKQ+H ++ SG D FV S F MY + G DA K+
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKV 173
Query: 68 FDEMPER-----------------------------------NLATWNAYISNAVLGGRP 92
FD M ++ N+ +WN +S G
Sbjct: 174 FDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYH 233
Query: 93 KNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGL 152
K A+ F + G PD +T + L + D +L +GR +HG++++ G + V + +
Sbjct: 234 KEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAM 293
Query: 153 VDFYGKCNEV-----------------------GLAKVVFDGIIDK-------------- 175
+D YGK V GL++ +G++DK
Sbjct: 294 IDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSR---NGLVDKALEMFELFKEQTME 350
Query: 176 -NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSV 234
N VSW S++ QN ++ ++F + GV+P I S+L AC IA L GRS
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRST 410
Query: 235 HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHA 294
H AV+ + N+ VGSAL+DMY KCG I ++I FN MP +NLVCWN+++ G++ G A
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKA 470
Query: 295 DMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY 354
+S FE + MR P++++ +LSAC + G ++G K F M+ +YGIKP EHY
Sbjct: 471 KEVMSIFESL--MRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHY 528
Query: 355 ACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDP 414
+C+V+LLGRAG + AY++IKEMP P VWGALLN+CR+ +L IAA+ LF L+P
Sbjct: 529 SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEP 588
Query: 415 NDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHE 474
+ G +VLLSN++AA G W E D +R +M+ +G+KK GCSWI VKNR++ A D SH
Sbjct: 589 ENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHP 648
Query: 475 RNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPG 534
+ +I + ++ +EM+ +G+ P+ +FAL+DVEE+E+ + HSEK+A+ FGL+ P G
Sbjct: 649 QIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG 708
Query: 535 VPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
P+++ KNLRICGDCH+ KFIS GRE+ +RD NRFH F DG CSC D+W
Sbjct: 709 TPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
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Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/580 (41%), Positives = 356/580 (61%), Gaps = 4/580 (0%)
Query: 8 PNDFTF-PCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADK 66
P D F L K + + + G+ +HA L+S HD+ +G + +MY+K G ++A K
Sbjct: 57 PADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARK 116
Query: 67 MFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL 126
+F++MP+R+ TW IS RP +A+ F + R G P+ T + + A +
Sbjct: 117 VFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERR 176
Query: 127 LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVV 186
G QLHGF V+ GFD NV V + L+D Y + + A++VFD + +NDVSW +++
Sbjct: 177 GCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAG 236
Query: 187 YVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGN 246
+ + E ++F R+G P F +S+ AC+ LE G+ VHA +K+ +
Sbjct: 237 HARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV 296
Query: 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306
F G+ L+DMY K GSI DA F+++ +R++V WN+++ YA G A+ FEEM
Sbjct: 297 AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMR- 355
Query: 307 MRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366
R PN ++ + VL+ACS +G +++G +Y + K GI P A HY VVDLLGRAG
Sbjct: 356 -RVGIRPNEISFLSVLTACSHSGLLDEGWH-YYELMKKDGIVPEAWHYVTVVDLLGRAGD 413
Query: 367 VDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426
++RA I+EMP+ PT ++W ALLNACR++ ELG AA+++F+LDP+D G HV+L N+
Sbjct: 414 LNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473
Query: 427 FAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKL 486
+A+ GRW +A VRK+MK+ G+KK CSW+ ++N IH+F A D H + EI ++
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEV 533
Query: 487 REEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRIC 546
++K GY+PDT+ + V+++E+ + +HSEKIALAF L+ PPG I I KN+R+C
Sbjct: 534 LAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 593
Query: 547 GDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
GDCH+A K S +VGRE+IVRD NRFH F DG CSC DYW
Sbjct: 594 GDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 256/591 (43%), Positives = 367/591 (62%), Gaps = 6/591 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRR I P FT + ++L G+Q+H +LK G +V V + +Y++TG
Sbjct: 406 MRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGY 465
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRP-KNAIDAFINLRRTGGEPDLITFCAFLN 119
++ K+F MPE + +WN+ I R A+ F+N +R G + + ITF + L+
Sbjct: 466 LNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLS 525
Query: 120 ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKND-V 178
A S S +LG+Q+HG +++ + N L+ YGKC E+ + +F + ++ D V
Sbjct: 526 AVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNV 585
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
+W SM+ Y+ N + + G FM ++VLSA A +A LE G VHA +
Sbjct: 586 TWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACS 645
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
V+AC+E ++ VGSALVDMY KCG + A FN MP RN WN++I GYA G + AL
Sbjct: 646 VRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEAL 705
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
FE M + + P++VT V VLSACS AG +E+G K F SM+ YG+ P EH++C+
Sbjct: 706 KLFETM-KLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMA 764
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNAC-RVYG-KPELGRIAADNLFKLDPND 416
D+LGRAG +D+ + I++MPM+P + +W +L AC R G K ELG+ AA+ LF+L+P +
Sbjct: 765 DVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPEN 824
Query: 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERN 476
+ N+VLL NM+AA GRWE+ RK+MKD +KK AG SW+++K+ +H+F A D SH
Sbjct: 825 AVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDA 884
Query: 477 TEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAI-PPGV 535
I L +L +M+ AGY+P T FALYD+E+E K + +HSEK+A+AF L A +
Sbjct: 885 DVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTL 944
Query: 536 PIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
PIRI KNLR+CGDCHSAFK+IS I GR++I+RD+NRFH F DG CSCSD+W
Sbjct: 945 PIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/582 (40%), Positives = 344/582 (59%), Gaps = 4/582 (0%)
Query: 6 ISPNDFTFPCLFKASSALHIPVT-GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDA 64
+ P+ +T + KA+S+L ++ KQ+H A+K + D FV + D YS+ +A
Sbjct: 412 LKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA 471
Query: 65 DKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124
+ +F E +L WNA ++ + F + + G D T C
Sbjct: 472 EILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFL 530
Query: 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML 184
+ G+Q+H + ++SG+D ++ V +G++D Y KC ++ A+ FD I +DV+W +M+
Sbjct: 531 FAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMI 590
Query: 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244
++N EEE +F R GV P +F I+++ A + + LE GR +HA A+K
Sbjct: 591 SGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT 650
Query: 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEM 304
+ FVG++LVDMY KCGSI DA F ++ N+ WNA++ G A G L F++M
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQM 710
Query: 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
S+ + P+ VT + VLSACS +G V + K SM YGIKP EHY+C+ D LGRA
Sbjct: 711 KSLGIK--PDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
GLV +A +I+ M M + S++ LL ACRV G E G+ A L +L+P DS +VLLS
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 425 NMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLT 484
NM+AA +W+E L R MK +KK G SWI VKN+IHIF D S+ + I +
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVK 888
Query: 485 KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLR 544
+ ++K GY+P+T+F L DVEEEEK + +HSEK+A+AFGL++ PP PIR+ KNLR
Sbjct: 889 DMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLR 948
Query: 545 ICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+CGDCH+A K+I+ + RE+++RD NRFHRF DG CSC DYW
Sbjct: 949 VCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/586 (40%), Positives = 346/586 (59%), Gaps = 3/586 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M E + P+ T + A SAL + GK++H A++SG V + + DMY+K G
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ A ++FD M ERN+ +WN+ I V PK A+ F + G +P ++ L+A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+D L+ GR +H V G D NVSV N L+ Y KC EV A +F + + VSW
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M++ + QN + F R V+P F SV++A A ++ + +H V ++
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+C++ N+FV +ALVDMY KCG+I A + F+ M ER++ WNA+I GY G AL
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM + PN VT + V+SACS +G VE G+K FY M Y I+ +HY +VDL
Sbjct: 527 FEEMQKGTIK--PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDL 584
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG ++ A++ I +MP++P ++V+GA+L AC+++ AA+ LF+L+P+D G H
Sbjct: 585 LGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYH 644
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLL+N++ A WE+ VR M G++K GCS + +KN +H F + T+H + +I
Sbjct: 645 VLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIY 704
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
A L KL +K AGY+PDTN L VE + K + HSEK+A++FGL+ G I +
Sbjct: 705 AFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVR 763
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR+C DCH+A K+IS + GRE++VRD RFH F +G CSC DYW
Sbjct: 764 KNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/588 (38%), Positives = 347/588 (59%), Gaps = 5/588 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ +SP+ FTFP L KA S L G+ +HA + G DVFV +Y+K
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 61 KDDADKMFD--EMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118
A +F+ +PER + +W A +S G P A++ F +R+ +PD + + L
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVL 229
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
NA + L+ GR +H +V+ G + + L Y KC +V AK++FD + N +
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
W +M+ Y +N MF + V P I+S +SACA++ LE RS++
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
++ ++F+ SAL+DM+ KCGS++ A + F++ +R++V W+A+I GY G A A+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
S + M R PN VT + +L AC+ +G V +G F M + I P +HYACV+
Sbjct: 410 SLYRAME--RGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVI 466
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418
DLLGRAG +D+AYE+IK MP++P ++VWGALL+AC+ + ELG AA LF +DP+++G
Sbjct: 467 DLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTG 526
Query: 419 NHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTE 478
++V LSN++AA W+ VR MK+ G+ K GCSW+ V+ R+ F+ D SH R E
Sbjct: 527 HYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEE 586
Query: 479 IQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIR 538
I+ + + +K G++ + + +L+D+ +EE + HSE+IA+A+GLI+ P G P+R
Sbjct: 587 IERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLR 646
Query: 539 ITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
ITKNLR C +CH+A K IS +V RE++VRD NRFH F DG CSC DYW
Sbjct: 647 ITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/586 (39%), Positives = 339/586 (57%), Gaps = 2/586 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
+R+ + + FTFP + KA + G LH+L +K G HDV S +YS +G
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DA K+FDE+P+R++ TW A S GR + AID F + G +PD L+A
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C L G + ++ N V LV+ Y KC ++ A+ VFD +++K+ V+W
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+ Y N + G ++FL +E ++P F I LS+CA + L+LG ++ +
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
N+F+ +AL+DMY KCG++ F +M E+++V NA I G A GH ++ +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F + + P+ T + +L C AG ++ G++ F +++ Y +K EHY C+VDL
Sbjct: 402 FGQTEKLGIS--PDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDL 459
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
GRAG++D AY +I +MPMRP VWGALL+ CR+ +L L L+P ++GN+
Sbjct: 460 WGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNY 519
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
V LSN+++ GRW+EA VR M G+KK G SWI ++ ++H F A D SH + +I
Sbjct: 520 VQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIY 579
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
A L L EM+ G++P T F +DVEEEEK +G+HSEK+A+A GLI+ G IR+
Sbjct: 580 AKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVV 639
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR+CGDCH K IS I RE++VRDNNRFH F +G CSC+DYW
Sbjct: 640 KNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/600 (38%), Positives = 352/600 (58%), Gaps = 16/600 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQI-HDVFVGCSAFDMYSKTG 59
M E + P++FT + A S L + TGK+LHA ALK+G + + FVG + DMY
Sbjct: 293 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352
Query: 60 LKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE-PDLITFCAFL 118
++FD M +R + WNA I+ K A+ FI + + G + T +
Sbjct: 353 QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 412
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
AC +HGF+V+ G D + V N L+D Y + ++ +A +F + D++ V
Sbjct: 413 PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV 472
Query: 179 SWCSMLVVYVQNYEEENGCQMFLT-----------ARREGVEPKDFMISSVLSACARIAG 227
+W +M+ YV + E+ + A R ++P + ++L +CA ++
Sbjct: 473 TWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSA 532
Query: 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGG 287
L G+ +HA A+K + ++ VGSALVDMY KCG +Q + F+++P++N++ WN II
Sbjct: 533 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 592
Query: 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI 347
Y G+ A+ M M PN VT + V +ACS +G V++G++IFY M YG+
Sbjct: 593 YGMHGNGQEAIDLLRMM--MVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 650
Query: 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMR-PTISVWGALLNACRVYGKPELGRIAA 406
+P ++HYACVVDLLGRAG + AY+++ MP W +LL A R++ E+G IAA
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710
Query: 407 DNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIF 466
NL +L+PN + ++VLL+N++++ G W++A VR+ MK+ G++K GCSWI + +H F
Sbjct: 711 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKF 770
Query: 467 QAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAF 526
A D+SH ++ ++ L L E M+ GY+PDT+ L++VEE+EK + HSEK+A+AF
Sbjct: 771 VAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAF 830
Query: 527 GLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
G++ PG IR+ KNLR+C DCH A KFIS IV RE+I+RD RFHRF +G CSC DYW
Sbjct: 831 GILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/587 (39%), Positives = 343/587 (58%), Gaps = 3/587 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR+ P+DFTF + KA LH G+QLHAL++ +G D VG D YSK
Sbjct: 241 MRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDR 300
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ +FDEMPE + ++N IS+ + + ++ F ++ G + F L+
Sbjct: 301 VLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
++ S LQ+GRQLH + + D + V N LVD Y KC A+++F + + VSW
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSW 420
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+++ YVQ G ++F R + ++VL A A A L LG+ +HA ++
Sbjct: 421 TALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIR 480
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ N+F GS LVDMY KCGSI+DA F +MP+RN V WNA+I +A G + A+ +
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F +M + P+ V+++ VL+ACS G VE+G + F +M+ YGI P +HYAC++DL
Sbjct: 541 FAKMIESGLQ--PDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDL 598
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDP-NDSGN 419
LGR G A +++ EMP P +W ++LNACR++ L AA+ LF ++ D+
Sbjct: 599 LGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAA 658
Query: 420 HVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEI 479
+V +SN++AA G WE+ V+K M++ GIKK SW+ V ++IH+F + D +H EI
Sbjct: 659 YVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEI 718
Query: 480 QAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRI 539
+ +L E++ GY PDT+ + DV+E+ K+ + +HSE++A+AF LI+ P G PI +
Sbjct: 719 VRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVV 778
Query: 540 TKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR C DCH+A K IS IV RE+ VRD +RFH F +G CSC DYW
Sbjct: 779 MKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 586 | ||||||
| 224108029 | 631 | predicted protein [Populus trichocarpa] | 0.994 | 0.923 | 0.749 | 0.0 | |
| 225432688 | 684 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.840 | 0.738 | 0.0 | |
| 297804786 | 684 | hypothetical protein ARALYDRAFT_493409 [ | 0.993 | 0.850 | 0.697 | 0.0 | |
| 356536005 | 686 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.852 | 0.714 | 0.0 | |
| 79475105 | 684 | pentatricopeptide repeat-containing prot | 0.989 | 0.847 | 0.692 | 0.0 | |
| 34365551 | 634 | At4g14850 [Arabidopsis thaliana] | 0.991 | 0.916 | 0.692 | 0.0 | |
| 357493705 | 684 | Pentatricopeptide repeat-containing prot | 0.998 | 0.855 | 0.706 | 0.0 | |
| 2244842 | 587 | hypothetical protein [Arabidopsis thalia | 0.914 | 0.913 | 0.648 | 0.0 | |
| 77551591 | 694 | PPR986-12, putative, expressed [Oryza sa | 0.998 | 0.842 | 0.603 | 0.0 | |
| 414591609 | 696 | TPA: hypothetical protein ZEAMMB73_07396 | 0.998 | 0.840 | 0.612 | 0.0 |
| >gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa] gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/586 (74%), Positives = 508/586 (86%), Gaps = 3/586 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRRE I PNDFTFPC FKAS+AL +P GKQ+HA+ALK GQI+D FVGCSAFDMYSKTGL
Sbjct: 49 MRRENIKPNDFTFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGL 108
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
K +A ++FDEMP RN+A WNAYISNAVL GRP AID FI RR GGEPDLITFCAFLNA
Sbjct: 109 KFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNA 168
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+D L LGRQLHG ++RSGF+G+VSV NG++D YGKC EV LA++VF+G+ +N VSW
Sbjct: 169 CADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSW 228
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
C+M+ QN E+E C +FL R+EG+E D+M+SSV+SA A I+GLE GRSVHA+AVK
Sbjct: 229 CTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVK 288
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACVEG+IFVGSALVDMYGKCGSI+D E F++MPERNLV WNA+I GYAHQG DMA++
Sbjct: 289 ACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTL 348
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM S EAV NYVTL+CVLSACSR GAV+ G +IF SM +Y I+PGAEHYAC+ D+
Sbjct: 349 FEEMQS---EAVANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADM 405
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V+RAYE +++MP+RPTISVWGALLNACRVYG+PELG+IAADNLFKLDP DSGNH
Sbjct: 406 LGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNH 465
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSNMFAA GRW+EA LVRKEMKDVGIKKGAGCSW++ KN++H+FQAKDTSHERN+EIQ
Sbjct: 466 VLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQ 525
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
AML KLR EM+AAGY+PDTN+ALYD+EEEEKMTEVG+HSEKIALAFGLIA+PPGVPIRIT
Sbjct: 526 AMLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRIT 585
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHSAFKFISGIVGRE+IVRDNNRFHRF D CSC D+W
Sbjct: 586 KNLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/586 (73%), Positives = 506/586 (86%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRR+ I PNDFTFPC FKAS +L P+ GKQ+HALA+K+GQI DVFVGCSAFDMYSK GL
Sbjct: 99 MRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGL 158
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
++A KMFDEMPERN+ATWNAY+SN+VL GR +A+ AFI R G EP+LITFCAFLNA
Sbjct: 159 TEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNA 218
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+ S L+LGRQLHGF+++SGF+ +VSV NGL+DFYGKC++VG ++++F GI NDVSW
Sbjct: 219 CAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSW 278
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
CSM+V YVQN EEE C +FL AR+EG+EP DFM+SSVLSACA ++ LE+G+SVH +AVK
Sbjct: 279 CSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVK 338
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACV GNIFVGSALVDMYGKCGSI+DAE AF++MPERNLV WNA+IGGYAHQG ADMA++
Sbjct: 339 ACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTL 398
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F+EMT PNYVT VCVLSACSRAG+V GM+IF SM +YGI+PGAEHYACVVDL
Sbjct: 399 FDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDL 458
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V++AY+ IK+MP+RPT+SVWGALL A +++GK ELG++AADNLF+LDP DSGNH
Sbjct: 459 LGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNH 518
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSNMFAA GRWEEA LVRKEMKDVGIKKGAGCSWI+ N +H+FQAKDTSHERN+EIQ
Sbjct: 519 VLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQ 578
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
AML KLR EM+AAGYIPDT+FAL+D+EEEEK EV +HSEKIALAFGLI+IP GVPIRIT
Sbjct: 579 AMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRIT 638
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHSA KFISGIVGRE+IVRDNN FHRF D CSC DYW
Sbjct: 639 KNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp. lyrata] gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/586 (69%), Positives = 487/586 (83%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRRE ++PNDFTFPC+FKA ++L +PVTGKQ+HALA+K G+I DVFVGCSAFDMY KT L
Sbjct: 99 MRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DDA K+FDE+PERNL TWNAYISN+V GRPK AI+AFI RR GG+P+ ITFC FLNA
Sbjct: 159 RDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNA 218
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CSD LL LG Q+HG + RSGFD +VSV NGL+DFYGKC ++ ++++F + KN VSW
Sbjct: 219 CSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSW 278
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
CS++ YVQN+E+E ++L +R+E VE DFMISSVLSACA +AGLELGRS+HA AVK
Sbjct: 279 CSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK 338
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACVE NIFVGSALVDMYGKCG I+D+E AF++MPE+NLV N++IGGYAHQG DMAL+
Sbjct: 339 ACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALAL 398
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FE+M C PNY+T V +LSACSRAGAVE GMKIF SM YGI+PGAEHY+C+VD+
Sbjct: 399 FEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDM 458
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V++A+E IK+MP++PTISVWGAL NACR++GKP LG +AA+NLFKLDP DSGNH
Sbjct: 459 LGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNH 518
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSN FAA GRW EA+ VR+EMK VGIKKGAG SWI+VKN++H FQAKD SH+ N EIQ
Sbjct: 519 VLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQ 578
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
MLTKLR +M+AAGY PD +LYD+EEEEK EV HHSEK+ALAFGL+A+P VPIRIT
Sbjct: 579 TMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRIT 638
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHS FKF+SG V RE+IVRDNNRFHRF DG CSC DYW
Sbjct: 639 KNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14850-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/588 (71%), Positives = 491/588 (83%), Gaps = 3/588 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRREC+ PNDFTFPC+FKAS++LH+PVTGKQLHALALK G I DVFVGCSAFDMYSKTGL
Sbjct: 100 MRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGL 159
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ +A MFDEMP RNLATWNAY+SNAV GR +AI AF GEP+ ITFCAFLNA
Sbjct: 160 RPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNA 219
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--KNDV 178
C+D L+LGRQLHGF+VRS + +VSV NGL+DFYGKC ++ +++VF I +N V
Sbjct: 220 CADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVV 279
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
SWCS+L VQN+EEE C +FL AR+E VEP DFMISSVLSACA + GLELGRSVHA+A
Sbjct: 280 SWCSLLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSACAELGGLELGRSVHALA 338
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
+KACVE NIFVGSALVD+YGKCGSI+ AE F +MPERNLV WNA+IGGYAH G DMAL
Sbjct: 339 LKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMAL 398
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
S F+EMTS C +YVTLV VLSACSRAGAVE+G++IF SM +YGI+PGAEHYACVV
Sbjct: 399 SLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVV 458
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418
DLLGR+GLVDRAYE IK MP+ PTISVWGALL AC+++GK +LG+IAA+ LF+LDP+DSG
Sbjct: 459 DLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSG 518
Query: 419 NHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTE 478
NHV+ SNM A+ GRWEEA +VRKEM+D+GIKK G SW++VKNR+H+FQAKD+ HE+N+E
Sbjct: 519 NHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSE 578
Query: 479 IQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIR 538
IQAML KLR EMK AGY+PD N +L+D+EEEEK +EV +HSEKIALAFGLI +P GVPIR
Sbjct: 579 IQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIR 638
Query: 539 ITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
ITKNLRIC DCHSA KFIS IVGRE+IVRDNNRFHRF DG+CSC DYW
Sbjct: 639 ITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE 1 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana] gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/586 (69%), Positives = 482/586 (82%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRRE + PNDFTFPC FKA ++L +PVTGKQ+HALA+K G+I DVFVGCSAFDMY KT L
Sbjct: 99 MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DDA K+FDE+PERNL TWNA+ISN+V GRP+ AI+AFI RR G P+ ITFCAFLNA
Sbjct: 159 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CSD L LG QLHG ++RSGFD +VSVCNGL+DFYGKC ++ ++++F + KN VSW
Sbjct: 219 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSW 278
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
CS++ YVQN+E+E ++L +R++ VE DFMISSVLSACA +AGLELGRS+HA AVK
Sbjct: 279 CSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK 338
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACVE IFVGSALVDMYGKCG I+D+E AF++MPE+NLV N++IGGYAHQG DMAL+
Sbjct: 339 ACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALAL 398
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM C PNY+T V +LSACSRAGAVE GMKIF SM YGI+PGAEHY+C+VD+
Sbjct: 399 FEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDM 458
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V+RAYE IK+MP++PTISVWGAL NACR++GKP+LG +AA+NLFKLDP DSGNH
Sbjct: 459 LGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNH 518
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSN FAA GRW EA+ VR+E+K VGIKKGAG SWI+VKN++H FQAKD SH N EIQ
Sbjct: 519 VLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQ 578
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
L KLR EM+AAGY PD +LYD+EEEEK EV HHSEK+ALAFGL+++P VPIRIT
Sbjct: 579 TTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRIT 638
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHS FKF+SG V RE+IVRDNNRFHRF DG CSC DYW
Sbjct: 639 KNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/586 (69%), Positives = 482/586 (82%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRRE + PNDFTFPC FKA ++L +PVTGKQ+HALA+K G+I DVFVGCSAFDMY KT L
Sbjct: 49 MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 108
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DDA K+FDE+PERNL TWNA+ISN+V GRP+ AI+AFI RR G P+ ITFCAFLNA
Sbjct: 109 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 168
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CSD L LG QLHG ++RSGFD +VSVCNGL+DFYGKC ++ ++++F + KN VSW
Sbjct: 169 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSW 228
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
CS++ YVQN+E+E ++L +R++ VE DFMISSVLSACA +AGLELGRS+HA AVK
Sbjct: 229 CSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK 288
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACVE IFVGSALVDMYGKCG I+D+E AF++MPE+NLV N++IGGYAHQG DMAL+
Sbjct: 289 ACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALAL 348
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM C PNY+T V +LSACSRAGAVE GMKIF SM YGI+PGAEHY+C+VD+
Sbjct: 349 FEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDM 408
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V+RAYE IK+MP++PTISVWGAL NACR++GKP+LG +AA+NLFKLDP DSGNH
Sbjct: 409 LGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNH 468
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSN FAA GRW EA+ VR+E+K VGIKKGAG SWI+VKN++H FQAKD SH N EIQ
Sbjct: 469 VLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQ 528
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
L KLR EM+AAGY PD +LYD+EEEEK EV HHSEK+ALAFGL+++P VPIRIT
Sbjct: 529 TTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRIT 588
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHS FKF+SG V RE+IVRDNNRFHRF DG CSC DYW
Sbjct: 589 KNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 634
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/587 (70%), Positives = 484/587 (82%), Gaps = 2/587 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRR+ + PNDFTFPC+FKAS+ + IP+TGKQ+H LALK G I+DVFVGCS FDMY KTG
Sbjct: 99 MRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGF 158
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ DA MFDEMP+RNLATWNAYISNAV R +AI AF GEP+ ITFCAFLNA
Sbjct: 159 RGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNA 218
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID-KNDVS 179
C D L LGRQLH F+VR G+ +VSV NGL+DFYGKC ++ A++VF+ I + KN VS
Sbjct: 219 CVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVS 278
Query: 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAV 239
WCSML VQN+EEE C +FL AR+E VEP DFMISSVLSACA + GLELGRSVHA+AV
Sbjct: 279 WCSMLAALVQNHEEERACMVFLQARKE-VEPTDFMISSVLSACAELGGLELGRSVHALAV 337
Query: 240 KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALS 299
KACVE NIFVGSALVDMYGKCGSI++AE F+++PERNLV WNA+IGGYAHQG DMAL
Sbjct: 338 KACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALR 397
Query: 300 SFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359
FEEMT P+YVTL+ +LS CSR GAVE+G++IF SM L YGI+PGAEH+ACVVD
Sbjct: 398 LFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVD 457
Query: 360 LLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419
LLGR+GLVDRAYE I+ M ++PTISVWGALL ACR++GK ELG+IAA+ LF+LD DSGN
Sbjct: 458 LLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGN 517
Query: 420 HVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEI 479
HV+LSNM A+ GRWEEA +VRKEMKD+GIKK G SWI+VKNRIH+FQAKD+SH+RN+EI
Sbjct: 518 HVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEI 577
Query: 480 QAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRI 539
QAML KLR MK AGY+PDTN +L+D+E+EEK +EV +HSEKIALAFGLIA+P GVPIRI
Sbjct: 578 QAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRI 637
Query: 540 TKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
TKNLRICGDCHSA KFIS IVGRE+IVRDN+RFHRF DG CSC DYW
Sbjct: 638 TKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2244842|emb|CAB10264.1| hypothetical protein [Arabidopsis thaliana] gi|7268231|emb|CAB78527.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/569 (64%), Positives = 442/569 (77%), Gaps = 33/569 (5%)
Query: 18 KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLA 77
+A ++L +PVTGKQ+HALA+K G+I DVFVGCSAFDMY KT L+DDA K+FDE+PERNL
Sbjct: 52 EAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLE 111
Query: 78 TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFL 137
TWNA+ISN+V GRP+ AI+AFI RR G P+ ITFCAFLNACSD L LG QLHG +
Sbjct: 112 TWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLV 171
Query: 138 VRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGC 197
+RSGFD +VS+ + ++++F + KN VSWCS++ YVQN+E+E
Sbjct: 172 LRSGFDTDVSIRS--------------SEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKAS 217
Query: 198 QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMY 257
++L +R++ VE DFMISSVLSACA +AGLELGRS+HA AVKACVE IFVGSALVDMY
Sbjct: 218 VLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMY 277
Query: 258 GKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVT 317
GKCG I+D+E AF++MPE+NLV N++IGGYAHQG DMAL+ FEEM C
Sbjct: 278 GKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGC-------- 329
Query: 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377
GAVE GMKIF SM YGI+PGAEHY+C+VD+LGRAG+V+RAYE IK+M
Sbjct: 330 -----------GAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKM 378
Query: 378 PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEAD 437
P++PTISVWGAL NACR++GKP+LG +AA+NLFKLDP DSGNHVLLSN FAA GRW EA+
Sbjct: 379 PIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEAN 438
Query: 438 LVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIP 497
VR+E+K VGIKKGAG SWI+VKN++H FQAKD SH N EIQ L KLR EM+AAGY P
Sbjct: 439 TVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKP 498
Query: 498 DTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFIS 557
D +LYD+EEEEK EV HHSEK+ALAFGL+++P VPIRITKNLRICGDCHS FKF+S
Sbjct: 499 DLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVS 558
Query: 558 GIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
G V RE+IVRDNNRFHRF DG CSC DYW
Sbjct: 559 GSVKREIIVRDNNRFHRFKDGICSCKDYW 587
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/588 (60%), Positives = 442/588 (75%), Gaps = 3/588 (0%)
Query: 1 MRRECISPNDFTFPCLFKAS-SALHIPVTGKQLHALALKSGQIH-DVFVGCSAFDMYSKT 58
M R + PNDFTFP FKA+ SA G Q+H+LA++ G + D FV C+A DMY KT
Sbjct: 108 MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 167
Query: 59 GLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118
G A +F EMP RN+ WNA ++NAVL GRP I+A+ LR GG P++++ CAF
Sbjct: 168 GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 227
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
NAC+ L LG Q HGF+V+ GF+ +VSV N +VDFYGKC G A+ VFDG+ +N V
Sbjct: 228 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 287
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
SWCSM+ Y QN EE +L ARR G EP DFM+SS L+ CA + GL LGR++HAVA
Sbjct: 288 SWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVA 347
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
V++C++ NIFV SALVDMYGKCG ++DAE F + P+RNLV WNA+IGGYAH G A AL
Sbjct: 348 VRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNAL 407
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
F++M E PNY+TLV V+++CSR G + G ++F +M ++GI+P EHYACVV
Sbjct: 408 LVFDDMIR-SGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 466
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418
DLLGRAG+ ++AYE+I+ MPMRP+ISVWGALL AC+++GK ELGRIAA+ LF+LDP DSG
Sbjct: 467 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSG 526
Query: 419 NHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTE 478
NHVLLSNMFA+ GRW EA +RKEMK+VGIKK GCSW++ KN +H+F+AKDT HE E
Sbjct: 527 NHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNE 586
Query: 479 IQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIR 538
IQA+L+KLR++M+AAGY+PDT ++LYD+EEEEK +EV HSEK+ALAFGLI IPPGVPIR
Sbjct: 587 IQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIR 646
Query: 539 ITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
I KNLRIC DCH AFKFISGIVGRE+IVRDNNRFH F CSC DYW
Sbjct: 647 IMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 694
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/588 (61%), Positives = 448/588 (76%), Gaps = 3/588 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVT-GKQLHALALKSGQI-HDVFVGCSAFDMYSKT 58
M R + PNDFTFP FKA+++ G QLHALAL+ G + D FV C+A DMY KT
Sbjct: 110 MLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDDAFVSCAALDMYFKT 169
Query: 59 GLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118
G A ++FDEMP RN+ WNA ++NAVL GRP ++A+ LR GG P++++ CAF
Sbjct: 170 GCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFF 229
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
NAC+ + L LG Q +GF+ + GF +VSV N +VDFYGKC VG A+ VFDG+ +N+V
Sbjct: 230 NACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNV 289
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
SWCSM+V Y QN EE ++L ARR G EP DFM+SSVL+ CA + GL+LGR++HAVA
Sbjct: 290 SWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVA 349
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
V++C++ NIFV SALVDMYGKCG I+DAE F +MP+RNLV WNA+IGGYAH G A AL
Sbjct: 350 VRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNAL 409
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
S F++M M E PNY+TLV VL+ACSR G ++G ++F +M ++GI+P EHYACVV
Sbjct: 410 SVFDKMI-MGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVV 468
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418
DLL RAG+ +RAY+II+ MPMRP+ISVWGALL C+++GK ELGRIAA+ LF+LDP DSG
Sbjct: 469 DLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSG 528
Query: 419 NHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTE 478
NHVLLSNM A+ GRW EA VRKEMK+VGIKK G SWI+ KN +H+FQAKDT+H+ N E
Sbjct: 529 NHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTHDMNRE 588
Query: 479 IQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIR 538
IQA+L KL+ +M+AAGY+PDT +ALYD+EEEEK +EV HSEK+ALAFGLI IPPG+PIR
Sbjct: 589 IQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLICIPPGIPIR 648
Query: 539 ITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
I KNLRIC DCH AFKFISGI GRE+IVRDNN FH F + CSC DYW
Sbjct: 649 IMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 586 | ||||||
| TAIR|locus:2130389 | 684 | LOI1 "lovastatin insensitive 1 | 1.0 | 0.856 | 0.692 | 1.9e-227 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.998 | 0.587 | 0.433 | 5.9e-128 | |
| TAIR|locus:2115130 | 691 | AT4G37170 "AT4G37170" [Arabido | 0.904 | 0.767 | 0.386 | 6.6e-121 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.733 | 0.565 | 0.457 | 1.4e-120 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.986 | 0.583 | 0.403 | 2.5e-120 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.994 | 0.720 | 0.402 | 1.4e-119 | |
| TAIR|locus:2149664 | 588 | MEF1 "mitochondrial RNA editin | 0.967 | 0.964 | 0.405 | 2e-118 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.996 | 0.852 | 0.390 | 5.6e-116 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.996 | 0.886 | 0.384 | 1.5e-115 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.989 | 0.651 | 0.382 | 2.4e-115 |
| TAIR|locus:2130389 LOI1 "lovastatin insensitive 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2195 (777.7 bits), Expect = 1.9e-227, P = 1.9e-227
Identities = 406/586 (69%), Positives = 482/586 (82%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRRE + PNDFTFPC FKA ++L +PVTGKQ+HALA+K G+I DVFVGCSAFDMY KT L
Sbjct: 99 MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DDA K+FDE+PERNL TWNA+ISN+V GRP+ AI+AFI RR G P+ ITFCAFLNA
Sbjct: 159 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CSD L LG QLHG ++RSGFD +VSVCNGL+DFYGKC ++ ++++F + KN VSW
Sbjct: 219 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSW 278
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
CS++ YVQN+E+E ++L +R++ VE DFMISSVLSACA +AGLELGRS+HA AVK
Sbjct: 279 CSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK 338
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACVE IFVGSALVDMYGKCG I+D+E AF++MPE+NLV N++IGGYAHQG DMAL+
Sbjct: 339 ACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALAL 398
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM C PNY+T V +LSACSRAGAVE GMKIF SM YGI+PGAEHY+C+VD+
Sbjct: 399 FEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDM 458
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V+RAYE IK+MP++PTISVWGAL NACR++GKP+LG +AA+NLFKLDP DSGNH
Sbjct: 459 LGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNH 518
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSN FAA GRW EA+ VR+E+K VGIKKGAG SWI+VKN++H FQAKD SH N EIQ
Sbjct: 519 VLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQ 578
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
L KLR EM+AAGY PD +LYD+EEEEK EV HHSEK+ALAFGL+++P VPIRIT
Sbjct: 579 TTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRIT 638
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHS FKF+SG V RE+IVRDNNRFHRF DG CSC DYW
Sbjct: 639 KNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 256/591 (43%), Positives = 367/591 (62%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRR I P FT + ++L G+Q+H +LK G +V V + +Y++TG
Sbjct: 406 MRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGY 465
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRP-KNAIDAFINLRRTGGEPDLITFCAFLN 119
++ K+F MPE + +WN+ I R A+ F+N +R G + + ITF + L+
Sbjct: 466 LNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLS 525
Query: 120 ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKND-V 178
A S S +LG+Q+HG +++ + N L+ YGKC E+ + +F + ++ D V
Sbjct: 526 AVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNV 585
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
+W SM+ Y+ N + + G FM ++VLSA A +A LE G VHA +
Sbjct: 586 TWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACS 645
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
V+AC+E ++ VGSALVDMY KCG + A FN MP RN WN++I GYA G + AL
Sbjct: 646 VRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEAL 705
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
FE M + + P++VT V VLSACS AG +E+G K F SM+ YG+ P EH++C+
Sbjct: 706 KLFETM-KLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMA 764
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNAC-RVYG-KPELGRIAADNLFKLDPND 416
D+LGRAG +D+ + I++MPM+P + +W +L AC R G K ELG+ AA+ LF+L+P +
Sbjct: 765 DVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPEN 824
Query: 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERN 476
+ N+VLL NM+AA GRWE+ RK+MKD +KK AG SW+++K+ +H+F A D SH
Sbjct: 825 AVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDA 884
Query: 477 TEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPG-V 535
I L +L +M+ AGY+P T FALYD+E+E K + +HSEK+A+AF L A +
Sbjct: 885 DVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTL 944
Query: 536 PIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
PIRI KNLR+CGDCHSAFK+IS I GR++I+RD+NRFH F DG CSCSD+W
Sbjct: 945 PIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
| TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1102 (393.0 bits), Expect = 6.6e-121, Sum P(2) = 6.6e-121
Identities = 206/533 (38%), Positives = 328/533 (61%)
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRT-GGEPDLIT 113
Y++ GL ++A K+FDEM E++ +W A ++ V +P+ A+ + ++R P++ T
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220
Query: 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173
+ A + ++ G+++HG +VR+G D + + + L+D YGKC + A+ +FD I+
Sbjct: 221 VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIV 280
Query: 174 DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRS 233
+K+ VSW SM+ Y ++ G +F P ++ + VL+ACA + ELG+
Sbjct: 281 EKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ 340
Query: 234 VHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGH 293
VH + + F S+LVDMY KCG+I+ A+ + P+ +LV W ++IGG A G
Sbjct: 341 VHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQ 400
Query: 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEH 353
D AL F+ + ++ P++VT V VLSAC+ AG VEKG++ FYS+T K+ + ++H
Sbjct: 401 PDEALKYFDLL--LKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDH 458
Query: 354 YACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLD 413
Y C+VDLL R+G ++ +I EMPM+P+ +W ++L C YG +L AA LFK++
Sbjct: 459 YTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIE 518
Query: 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSH 473
P + +V ++N++AA G+WEE +RK M+++G+ K G SW +K + H+F A DTSH
Sbjct: 519 PENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSH 578
Query: 474 ERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPP 533
+I L +LR++MK GY+P T+ L+DVE+E+K + +HSEK+A+AF +++
Sbjct: 579 PMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEE 638
Query: 534 GVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
G I++ KNLR C DCH A KFIS I R++ VRD+ RFH F +G CSC DYW
Sbjct: 639 GTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 200/437 (45%), Positives = 286/437 (65%)
Query: 150 NGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE 209
NGLVD K E + ++ + ++ N VSW S++ QN ++ ++F + GV+
Sbjct: 331 NGLVD---KALE--MFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385
Query: 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIA 269
P I S+L AC IA L GRS H AV+ + N+ VGSAL+DMY KCG I ++I
Sbjct: 386 PNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIV 445
Query: 270 FNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG 329
FN MP +NLVCWN+++ G++ G A +S FE + MR P++++ +LSAC + G
Sbjct: 446 FNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESL--MRTRLKPDFISFTSLLSACGQVG 503
Query: 330 AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGAL 389
++G K F M+ +YGIKP EHY+C+V+LLGRAG + AY++IKEMP P VWGAL
Sbjct: 504 LTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGAL 563
Query: 390 LNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIK 449
LN+CR+ +L IAA+ LF L+P + G +VLLSN++AA G W E D +R +M+ +G+K
Sbjct: 564 LNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLK 623
Query: 450 KGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEE 509
K GCSWI VKNR++ A D SH + +I + ++ +EM+ +G+ P+ +FAL+DVEE+
Sbjct: 624 KNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ 683
Query: 510 EKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDN 569
E+ + HSEK+A+ FGL+ P G P+++ KNLRICGDCH+ KFIS GRE+ +RD
Sbjct: 684 EQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDT 743
Query: 570 NRFHRFWDGYCSCSDYW 586
NRFH F DG CSC D+W
Sbjct: 744 NRFHHFKDGICSCGDFW 760
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
Identities = 235/582 (40%), Positives = 344/582 (59%)
Query: 6 ISPNDFTFPCLFKASSALHIPVT-GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDA 64
+ P+ +T + KA+S+L ++ KQ+H A+K + D FV + D YS+ +A
Sbjct: 412 LKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA 471
Query: 65 DKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124
+ +F E +L WNA ++ + F + + G D T C
Sbjct: 472 EILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFL 530
Query: 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML 184
+ G+Q+H + ++SG+D ++ V +G++D Y KC ++ A+ FD I +DV+W +M+
Sbjct: 531 FAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMI 590
Query: 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244
++N EEE +F R GV P +F I+++ A + + LE GR +HA A+K
Sbjct: 591 SGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT 650
Query: 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEM 304
+ FVG++LVDMY KCGSI DA F ++ N+ WNA++ G A G L F++M
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQM 710
Query: 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
S+ + P+ VT + VLSACS +G V + K SM YGIKP EHY+C+ D LGRA
Sbjct: 711 KSLGIK--PDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
GLV +A +I+ M M + S++ LL ACRV G E G+ A L +L+P DS +VLLS
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 425 NMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLT 484
NM+AA +W+E L R MK +KK G SWI VKN+IHIF D S+ + I +
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVK 888
Query: 485 KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLR 544
+ ++K GY+P+T+F L DVEEEEK + +HSEK+A+AFGL++ PP PIR+ KNLR
Sbjct: 889 DMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLR 948
Query: 545 ICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+CGDCH+A K+I+ + RE+++RD NRFHRF DG CSC DYW
Sbjct: 949 VCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 236/586 (40%), Positives = 346/586 (59%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M E + P+ T + A SAL + GK++H A++SG V + + DMY+K G
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ A ++FD M ERN+ +WN+ I V PK A+ F + G +P ++ L+A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+D L+ GR +H V G D NVSV N L+ Y KC EV A +F + + VSW
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M++ + QN + F R V+P F SV++A A ++ + +H V ++
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+C++ N+FV +ALVDMY KCG+I A + F+ M ER++ WNA+I GY G AL
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM + PN VT + V+SACS +G VE G+K FY M Y I+ +HY +VDL
Sbjct: 527 FEEMQKGTIK--PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDL 584
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG ++ A++ I +MP++P ++V+GA+L AC+++ AA+ LF+L+P+D G H
Sbjct: 585 LGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYH 644
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLL+N++ A WE+ VR M G++K GCS + +KN +H F + T+H + +I
Sbjct: 645 VLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIY 704
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
A L KL +K AGY+PDTN L VE + K + HSEK+A++FGL+ G I +
Sbjct: 705 AFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVR 763
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR+C DCH+A K+IS + GRE++VRD RFH F +G CSC DYW
Sbjct: 764 KNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2149664 MEF1 "mitochondrial RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 232/572 (40%), Positives = 344/572 (60%)
Query: 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERN 75
L +S+ + G QLH +KSG V + + YSK+ L D+ + F++ P+++
Sbjct: 21 LLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKS 80
Query: 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITFCAFLNACSDCSLLQLGRQLH 134
TW++ IS P +++ F+ G PD + +C+ S +GR +H
Sbjct: 81 STTWSSIISCFAQNELPWMSLE-FLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVH 139
Query: 135 GFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEE 194
+++G+D +V V + LVD Y KC E+ A+ +FD + +N V+W M+ Y Q E E
Sbjct: 140 CLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENE 199
Query: 195 NGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV 254
+F A E + D+ SSV+S CA LELGR +H +++K+ + + FVGS+LV
Sbjct: 200 EALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLV 259
Query: 255 DMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN 314
+Y KCG + A FN++P +NL WNA++ YA H + F+ M + PN
Sbjct: 260 SLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMK--PN 317
Query: 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374
++T + VL+ACS AG V++G + ++ + I+P +HYA +VD+LGRAG + A E+I
Sbjct: 318 FITFLNVLNACSHAGLVDEG-RYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVI 376
Query: 375 KEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWE 434
MP+ PT SVWGALL +C V+ EL AAD +F+L P SG H+ LSN +AA GR+E
Sbjct: 377 TNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFE 436
Query: 435 EADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAG 494
+A RK ++D G KK G SW+ +N++H F A + HE++ EI L +L EEM+ AG
Sbjct: 437 DAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAG 496
Query: 495 YIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFK 554
YI DT++ L +V+ +EK + +HSE++A+AFGLI P PIR+ KNLR+CGDCH+A K
Sbjct: 497 YIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIK 556
Query: 555 FISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
F+S R +IVRDNNRFHRF DG CSC+DYW
Sbjct: 557 FMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
Identities = 229/586 (39%), Positives = 339/586 (57%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
+R+ + + FTFP + KA + G LH+L +K G HDV S +YS +G
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DA K+FDE+P+R++ TW A S GR + AID F + G +PD L+A
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C L G + ++ N V LV+ Y KC ++ A+ VFD +++K+ V+W
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+ Y N + G ++FL +E ++P F I LS+CA + L+LG ++ +
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
N+F+ +AL+DMY KCG++ F +M E+++V NA I G A GH ++ +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F + + P+ T + +L C AG ++ G++ F +++ Y +K EHY C+VDL
Sbjct: 402 FGQTEKLGIS--PDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDL 459
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
GRAG++D AY +I +MPMRP VWGALL+ CR+ +L L L+P ++GN+
Sbjct: 460 WGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNY 519
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
V LSN+++ GRW+EA VR M G+KK G SWI ++ ++H F A D SH + +I
Sbjct: 520 VQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIY 579
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
A L L EM+ G++P T F +DVEEEEK +G+HSEK+A+A GLI+ G IR+
Sbjct: 580 AKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVV 639
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR+CGDCH K IS I RE++VRDNNRFH F +G CSC+DYW
Sbjct: 640 KNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
Identities = 229/595 (38%), Positives = 348/595 (58%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR+ + P +FPC KA S+L +GKQ H A G D+FV + MYS G
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFC----- 115
+DA K+FDE+P+RN+ +W + I L G +A+ F +L + D F
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186
Query: 116 -AFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE--VGLAKVVFDGI 172
+ ++ACS L +H F+++ GFD VSV N L+D Y K E V +A+ +FD I
Sbjct: 187 VSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI 246
Query: 173 IDKNDVSWCSMLVVYVQNYEEENGCQMFLT-ARREGVEPKDFMISSVLSACARIAGLELG 231
+DK+ VS+ S++ VY Q+ ++F + + V +S+VL A + L +G
Sbjct: 247 VDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG 306
Query: 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
+ +H ++ +E ++ VG++++DMY KCG ++ A AF++M +N+ W A+I GY
Sbjct: 307 KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366
Query: 292 GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351
GHA AL F M PNY+T V VL+ACS AG +G + F +M ++G++PG
Sbjct: 367 GHAAKALELFPAMIDSGVR--PNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGL 424
Query: 352 EHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411
EHY C+VDLLGRAG + +AY++I+ M M+P +W +LL ACR++ EL I+ LF+
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFE 484
Query: 412 LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDT 471
LD ++ G ++LLS+++A GRW++ + VR MK+ G+ K G S + + +H+F D
Sbjct: 485 LDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDE 544
Query: 472 SHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAI 531
H + +I L +L ++ AGY+ +T+ +DV+EEEK + HSEK+A+AFG++
Sbjct: 545 EHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNT 604
Query: 532 PPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
PG + + KNLR+C DCH+ K IS IV RE +VRD RFH F DG CSC DYW
Sbjct: 605 VPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 229/598 (38%), Positives = 354/598 (59%)
Query: 4 ECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHD-VFVGCSAFDMYSKTGLKD 62
E + P++FT + A S L + TGK+LHA ALK+G + + FVG + DMY
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355
Query: 63 DADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE-PDLITFCAFLNAC 121
++FD M +R + WNA I+ K A+ FI + + G + T + AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415
Query: 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWC 181
+HGF+V+ G D + V N L+D Y + ++ +A +F + D++ V+W
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWN 475
Query: 182 SMLVVYVQNYEEENGCQMFLT-----------ARREGVEPKDFMISSVLSACARIAGLEL 230
+M+ YV + E+ + A R ++P + ++L +CA ++ L
Sbjct: 476 TMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAK 535
Query: 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAH 290
G+ +HA A+K + ++ VGSALVDMY KCG +Q + F+++P++N++ WN II Y
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595
Query: 291 QGHADMALSSFEEMTSMRCEAV-PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP 349
G+ A+ + + M + V PN VT + V +ACS +G V++G++IFY M YG++P
Sbjct: 596 HGNGQEAI---DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEP 652
Query: 350 GAEHYACVVDLLGRAGLVDRAYEIIKEMPMR-PTISVWGALLNACRVYGKPELGRIAADN 408
++HYACVVDLLGRAG + AY+++ MP W +LL A R++ E+G IAA N
Sbjct: 653 SSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQN 712
Query: 409 LFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQA 468
L +L+PN + ++VLL+N++++ G W++A VR+ MK+ G++K GCSWI + +H F A
Sbjct: 713 LIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVA 772
Query: 469 KDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGL 528
D+SH ++ ++ L L E M+ GY+PDT+ L++VEE+EK + HSEK+A+AFG+
Sbjct: 773 GDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGI 832
Query: 529 IAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+ PG IR+ KNLR+C DCH A KFIS IV RE+I+RD RFHRF +G CSC DYW
Sbjct: 833 LNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WSH6 | PP312_ARATH | No assigned EC number | 0.6928 | 0.9897 | 0.8479 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 586 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-167 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-154 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-58 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-54 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-23 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 490 bits (1264), Expect = e-167
Identities = 223/576 (38%), Positives = 332/576 (57%), Gaps = 4/576 (0%)
Query: 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEM 71
T+ L +A AL K ++ SG D ++ M+ K G+ DA ++FDEM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 72 PERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGR 131
PERNLA+W I V G + A F + G + + TF L A + + G+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 132 QLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYV-QN 190
QLH ++++G G+ V L+D Y KC ++ A+ VFDG+ +K V+W SML Y
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG 250
Y EE C ++ R GV F S ++ +R+A LE + HA ++ +I
Sbjct: 305 YSEEALC-LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE 310
+ALVD+Y K G ++DA F++MP +NL+ WNA+I GY + G A+ FE M +
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-- 421
Query: 311 AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRA 370
PN+VT + VLSAC +G E+G +IF SM+ + IKP A HYAC+++LLGR GL+D A
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 371 YEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430
Y +I+ P +PT+++W ALL ACR++ ELGR+AA+ L+ + P N+V+L N++ ++
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
Query: 431 GRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEM 490
GR EA V + +K G+ C+WI VK + H F + D H ++ EI L +L +E+
Sbjct: 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601
Query: 491 KAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCH 550
GY+ + N L DV+E+E+ +HSEK+A+AFGLI P++IT++ RIC DCH
Sbjct: 602 SEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCH 661
Query: 551 SAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KFI+ + RE++VRD +RFH F G CSC DYW
Sbjct: 662 KVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-154
Identities = 225/588 (38%), Positives = 330/588 (56%), Gaps = 13/588 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR + P+ T + A L G+++H +K+G DV V S MY G
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+A+K+F M ++ +W A IS G P A++ + + + PD IT + L+A
Sbjct: 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+ L +G +LH R G V V N L++ Y KC + A VF I +K+ +SW
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458
Query: 181 CSMLVVYVQNYEEENGC----QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236
S++ N QM LT ++P + + LSACARI L G+ +HA
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQMLLT-----LKPNSVTLIAALSACARIGALMCGKEIHA 513
Query: 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADM 296
++ + + F+ +AL+D+Y +CG + A FN E+++V WN ++ GY G M
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSM 572
Query: 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYAC 356
A+ F M P+ VT + +L ACSR+G V +G++ F+SM KY I P +HYAC
Sbjct: 573 AVELFNRMVESGVN--PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630
Query: 357 VVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416
VVDLLGRAG + AY I +MP+ P +VWGALLNACR++ ELG +AA ++F+LDPN
Sbjct: 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690
Query: 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERN 476
G ++LL N++A G+W+E VRK M++ G+ GCSW+ VK ++H F D SH +
Sbjct: 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750
Query: 477 TEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVP 536
EI +L E+MKA+G + ++ ++E + G HSE++A+AFGLI PG+P
Sbjct: 751 KEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG-HSERLAIAFGLINTVPGMP 809
Query: 537 IRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSD 584
I +TKNL +C +CH+ KFIS IV RE+ VRD +FH F DG CSC D
Sbjct: 810 IWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 5e-58
Identities = 119/368 (32%), Positives = 197/368 (53%), Gaps = 8/368 (2%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+ P+ +TFPC+ + + G+++HA ++ G DV V + MY K G A
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+FD MP R+ +WNA IS G ++ F +R +PDL+T + ++AC
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
+LGR++HG++V++GF +VSVCN L+ Y G A+ VF + K+ VSW +M+
Sbjct: 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362
Query: 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245
Y +N + + + ++ V P + I+SVLSACA + L++G +H +A + +
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMT 305
+ V +AL++MY KC I A F+ +PE++++ W +II G AL F +
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ-- 480
Query: 306 SMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA--CVVDLLGR 363
M PN VTL+ LSAC+R GA+ G +I ++ L+ GI G + + ++DL R
Sbjct: 481 -MLLTLKPNSVTLIAALSACARIGALMCGKEI-HAHVLRTGI--GFDGFLPNALLDLYVR 536
Query: 364 AGLVDRAY 371
G ++ A+
Sbjct: 537 CGRMNYAW 544
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 2e-54
Identities = 116/400 (29%), Positives = 198/400 (49%), Gaps = 14/400 (3%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ + ++ + LF+ G ++ + AL S V +G + M+ + G
Sbjct: 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
A +F +MPER+L +WN + G A+ + + G PD+ TF L
Sbjct: 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C L GR++H +VR GF+ +V V N L+ Y KC +V A++VFD + ++ +SW
Sbjct: 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISW 256
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+ Y +N E G ++F T R V+P I+SV+SAC + LGR +H VK
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
++ V ++L+ MY GS +AE F++M ++ V W A+I GY G D AL +
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 301 FEEMTSMRCEAV-PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV-- 357
+ M + V P+ +T+ VLSAC+ G ++ G+K+ + + G Y V
Sbjct: 377 Y---ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH-----ELAERKGLISYVVVAN 428
Query: 358 --VDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRV 395
+++ + +D+A E+ +P + IS W +++ R+
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEKDVIS-WTSIIAGLRL 467
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-23
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 23/130 (17%)
Query: 453 GCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKM 512
GC W K + D SH + E +L + +K G +P+T +DV+ EE
Sbjct: 2 GCVWSEGK----KTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFR 51
Query: 513 TEVGH------HSEKIALAFGLIAIPPGVPIRITKNL-RICGDCHSAFKFISGIVGREVI 565
H+EK ALA+GL+ RI K L R+CGDCH F++I+ GRE+I
Sbjct: 52 DNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 566 VRDNNRFHRF 575
VRD +RFH F
Sbjct: 106 VRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 8e-17
Identities = 45/133 (33%), Positives = 70/133 (52%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR +S + FTF + + S L + KQ HA +++G D+ + D+YSK G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DA +FD MP +NL +WNA I+ GR A++ F + G P+ +TF A L+A
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 121 CSDCSLLQLGRQL 133
C L + G ++
Sbjct: 436 CRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Query: 216 SSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE 275
++++S CA+ ++ V V A VE N+ AL+D + G + A A+ M
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 276 RNL----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331
+N+ V +NA+I G D A EM + P+++T+ ++ AC+ AG V
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377
++ ++ Y M +Y IK E Y V+ + G D A I +M
Sbjct: 596 DRAKEV-YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 16/203 (7%)
Query: 260 CGSIQDAEIAFNKM---PERNL----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312
C S QD + A + E L + +I A G D F EM + E
Sbjct: 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-- 504
Query: 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYE 372
N T ++ C+RAG V K + M K +KP + ++ G++G VDRA++
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 373 IIKEM-----PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN-HVLLSNM 426
++ EM P+ P GAL+ AC G+ + + + + + + + + N
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623
Query: 427 FAATGRWEEADLVRKEMKDVGIK 449
+ G W+ A + +MK G+K
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 8e-07
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327
++V +N +I GY +G + AL F EM + PN T ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK--PNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 71/336 (21%), Positives = 127/336 (37%), Gaps = 51/336 (15%)
Query: 56 SKTGLKDDADKMFDEMP----ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDL 111
+K+G D ++F EM E N+ T+ A I G+ A A+ +R +PD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 112 ITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDG--------NVSVCNGLVDFYGKCNEVG 163
+ F A ++AC Q G F V + +++V L+ +V
Sbjct: 543 VVFNALISACG-----QSGAVDRAFDVLAEMKAETHPIDPDHITV-GALMKACANAGQVD 596
Query: 164 LAKVVFDGIIDKND-----------VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD 212
AK V+ +I + + V+ CS Q + + ++ +++GV+P +
Sbjct: 597 RAKEVYQ-MIHEYNIKGTPEVYTIAVNSCS------QKGDWDFALSIYDDMKKKGVKPDE 649
Query: 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIA--- 269
S+++ L+ + A K ++ S+L+ G C + ++ + A
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM---GACSNAKNWKKALEL 706
Query: 270 FNKMPERNLV----CWNAIIGGYAHQGHADMALSSFEEM-TSMRCEAVPNYVTLVCVLSA 324
+ + L NA+I AL EM C PN +T +L A
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC---PNTITYSILLVA 763
Query: 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
R + G+ + S + GIKP C+ L
Sbjct: 764 SERKDDADVGLDL-LSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 279 VCWNAIIGGYAHQGHADMALSSFEEMTSMRC 309
V +N++I GY G + AL F+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 586 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.95 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.95 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.8 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.74 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.58 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.55 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.46 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.46 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.43 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.42 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.34 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.29 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.25 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.22 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.93 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.92 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.48 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.44 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.4 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.38 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.19 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.17 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.07 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.95 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.95 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.88 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.86 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.85 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.8 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.79 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.78 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.78 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.73 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.72 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.59 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.57 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.47 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.73 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.68 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.61 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.46 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.41 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.32 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.17 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.13 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.84 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.84 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.46 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.42 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.41 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.15 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.01 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.83 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.71 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.48 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.4 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.25 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.84 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.66 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.56 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.37 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.57 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.42 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.93 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.79 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.44 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.33 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.28 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 90.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.17 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.16 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.3 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.24 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.17 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.84 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.77 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.63 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.55 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.93 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.88 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.44 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.22 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.73 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.7 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.56 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.01 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.42 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.99 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.82 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.48 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.96 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.83 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.65 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.62 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.32 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.26 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.88 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.86 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.83 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.72 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.22 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 81.6 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.47 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.82 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 80.64 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-122 Score=991.10 Aligned_cols=580 Identities=38% Similarity=0.653 Sum_probs=574.6
Q ss_pred CCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHH
Q 007878 5 CISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYIS 84 (586)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 84 (586)
++.||..||+.++.+|++.++++.|.++|..|++.|+.||..+||.|+++|+++|++++|.++|++|++||+++||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007878 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|+++|+++|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC
Q 007878 165 AKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244 (586)
Q Consensus 165 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (586)
|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007878 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
||..++++|+++|+++|++++|.++|++|.+||+++||+||.+|+++|+.++|+++|++|.+ .|+.||..||++++.+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007878 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
|++.|++++|.++|+.|.+++|+.|+..+|+++|++|+++|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|..
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHH
Q 007878 405 AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLT 484 (586)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (586)
+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|.++|..||+.+++++.+.
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcEEEEecccccCCcchhhHhhccccCceE
Q 007878 485 KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREV 564 (586)
Q Consensus 485 ~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~ 564 (586)
++..+|++.||+||+.+++|++++++|+..+.+||||||++|||+++|+|.||||+||||+|+|||+|+|+||++++|+|
T Consensus 596 ~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 675 (697)
T PLN03081 596 ELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREI 675 (697)
T ss_pred HHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccceecccccccCCCC
Q 007878 565 IVRDNNRFHRFWDGYCSCSDYW 586 (586)
Q Consensus 565 ~~~~~~~~h~~~~g~~~~~~~~ 586 (586)
||||.+|||||+||+|||+|||
T Consensus 676 ~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 676 VVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EEecCCccccCCCCcccccccC
Confidence 9999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-117 Score=980.08 Aligned_cols=579 Identities=39% Similarity=0.686 Sum_probs=570.0
Q ss_pred CccCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHH
Q 007878 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWN 80 (586)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (586)
|++.|+.||.+||+.+|.+|++.|+++.|.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|..||+++||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007878 81 AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN 160 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 160 (586)
+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..+||+|+++|+++|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH
Q 007878 161 EVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (586)
++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007878 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+ .|+.||..||+.
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ 594 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE--SGVNPDEVTFIS 594 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCcccHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999 899999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|..+++.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999987789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHH
Q 007878 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (586)
.|+.+.+++.+++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++.+|.|.++|.+||+.++|+
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~ 754 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEIN 754 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcEEEEecccccCCcchhhHhhcccc
Q 007878 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIV 560 (586)
Q Consensus 481 ~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~ 560 (586)
..++++..+|++.||+||+.+++ ++++++|+..+++||||||++|||+++|+|.||||+||||+|+|||+++|+||+++
T Consensus 755 ~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~ 833 (857)
T PLN03077 755 TVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV 833 (857)
T ss_pred HHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHh
Confidence 99999999999999999999887 55778899999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccceecccccccCC
Q 007878 561 GREVIVRDNNRFHRFWDGYCSCSD 584 (586)
Q Consensus 561 ~~~~~~~~~~~~h~~~~g~~~~~~ 584 (586)
+|+|||||.+|||||+||+|||+|
T Consensus 834 ~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 834 RREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-75 Score=640.28 Aligned_cols=570 Identities=23% Similarity=0.348 Sum_probs=513.0
Q ss_pred CccCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHH
Q 007878 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWN 80 (586)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (586)
|++.|+.|+..+|..++++|.+.+.++.|.++|..+++.+..++..++|+|+.+|+++|+++.|.++|++|++||+++||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007878 81 AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN 160 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 160 (586)
+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.+++..+.+.|+.||..++|+|+.+|+++|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH
Q 007878 161 EVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (586)
++++|.++|++|+.+|.++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007878 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
.|+.||..+||+|+++|+++|++++|.++|++|.+||.++||+||.+|++.|++++|+++|++|.+ .|+.||..||+.
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~Pd~~t~~~ 394 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ--DNVSPDEITIAS 394 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCCCceeHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
++.+|++.|++++|.++++.+.+. |+.|+..+|++||++|+++|++++|.++|++|. +||..+|++++.+|.+.|+.+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHH
Confidence 999999999999999999999775 999999999999999999999999999999996 479999999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCE------------------
Q 007878 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNR------------------ 462 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~------------------ 462 (586)
+|..+|++|.+.-++|..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++..
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~ 552 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK 552 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 99999999987667778899999999999999999999999998888877653322211100
Q ss_pred -EEEE---EecCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhhhhhh---hHHHHHHHHHhcccCCCCCC
Q 007878 463 -IHIF---QAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEV---GHHSEKIALAFGLIAIPPGV 535 (586)
Q Consensus 463 -~~~~---~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~ 535 (586)
+..| ..+...|+..++ +.+++++|.+.|+.||..++...+..+.+.+.+ ....+.|...+|+.|...++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~----A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 0000 001122343333 558999999999999999998888777765544 34566777788988877776
Q ss_pred cEEEEecccccCCcchhhHhhccccCc------eEEEecCCccceecccc
Q 007878 536 PIRITKNLRICGDCHSAFKFISGIVGR------EVIVRDNNRFHRFWDGY 579 (586)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~~s~~~~~------~~~~~~~~~~h~~~~g~ 579 (586)
. ++++.+..+|+..+|.++|.+|+.+ ..++..|+.+.+.+.|+
T Consensus 629 ~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 629 A-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred H-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 6 7999999999999999999998644 23344555555555444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-65 Score=549.99 Aligned_cols=528 Identities=13% Similarity=0.166 Sum_probs=454.5
Q ss_pred CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCC-CCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHH
Q 007878 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQ-IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYIS 84 (586)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 84 (586)
..++...|..++..|.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346778899999999999999999999999999985 5677888899999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007878 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHH
Q 007878 165 AKVVFDGII----DKNDVSWCSMLVVYVQNYEEENGCQMFLTARR--EGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238 (586)
Q Consensus 165 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 238 (586)
|.++|++|. .||.++||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999994 58999999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC
Q 007878 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN 314 (586)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd 314 (586)
.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+ .|+.||
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k--~G~~pd 683 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK--QGIKLG 683 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCC
Confidence 9999999999999999999999999999999999984 8999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHH
Q 007878 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM---PMRPTISVWGALLN 391 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~ 391 (586)
..+|++++.+|++.|++++|.++|++|... |+.||..+|++||.+|++.|++++|.++|++| ++.||..+|++++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999764 99999999999999999999999999999998 78899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccC-CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-ccCCceeeeeeCCEEEEEEec
Q 007878 392 ACRVYGKPELGRIAADNLFKLD-PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI-KKGAGCSWISVKNRIHIFQAK 469 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~~~~~~~~~~~~~ 469 (586)
+|++.|++++|.+++.+|.+.+ .++..+|..++.+|. ++++++..+.+.+..... .+...
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~---------------- 824 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIE---------------- 824 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccc----------------
Confidence 9999999999999999999876 456788888887654 245555555444332110 00000
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcE--EEEecccccC
Q 007878 470 DTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPI--RITKNLRICG 547 (586)
Q Consensus 470 ~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~l~~~~ 547 (586)
.. -...+..++++|.+.|+.||..++...+ .|.....-......|-..+++.+.+++... .+++.+ |.
T Consensus 825 ---n~----w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~ 894 (1060)
T PLN03218 825 ---NK----WTSWALMVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--GE 894 (1060)
T ss_pred ---cc----hHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--cc
Confidence 00 0122457888888888888887775554 333111112234455556777776666432 233332 11
Q ss_pred CcchhhHhhccccCceE
Q 007878 548 DCHSAFKFISGIVGREV 564 (586)
Q Consensus 548 ~~~~~~~~~s~~~~~~~ 564 (586)
.-..|..++..|..+.|
T Consensus 895 ~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 895 YDPRAFSLLEEAASLGV 911 (1060)
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 12467777777666644
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-64 Score=543.17 Aligned_cols=441 Identities=19% Similarity=0.234 Sum_probs=415.0
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC----CCCcccHHHHH
Q 007878 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP----ERNLATWNAYI 83 (586)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li 83 (586)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||+.+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 48999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCC
Q 007878 84 SNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVR--SGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred hHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007878 162 VGLAKVVFDGIID----KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 162 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
+++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999954 577999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC
Q 007878 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP----ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP 313 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p 313 (586)
|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.. .|+.|
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~--~Gi~P 752 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR--LGLCP 752 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 9999999999999999999999999999999999995 59999999999999999999999999999999 89999
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----hcC-------------------ChHHH
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLG----RAG-------------------LVDRA 370 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A 370 (586)
|..||+.++.+|++.|++++|.++|..|.+. |+.||..+|++|+.+|. +++ ..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 9999999999999999999999999999775 99999999999997643 222 24679
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 371 YEIIKEM---PMRPTISVWGALLNACRVYGKPELGRIAADNLFKL-DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 371 ~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+|++| ++.||..||+.++.++.+.+..+.+..+++.+... .+++..+|..|++.+.+. .++|..++++|...
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999 88999999999998888888999998888877654 466788999999987432 36899999999999
Q ss_pred CCccCCc
Q 007878 447 GIKKGAG 453 (586)
Q Consensus 447 g~~~~~~ 453 (586)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=517.01 Aligned_cols=488 Identities=20% Similarity=0.276 Sum_probs=426.3
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007878 74 RNLATWNAYISNAVLGGRPKNAIDAFINLRRTG-GEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGL 152 (586)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (586)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHH
Q 007878 153 VDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGR 232 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 232 (586)
+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007878 233 SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+ .|+.
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~ 322 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVS 322 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007878 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNA 392 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 392 (586)
||..||++++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 99999999999999999999999999999876 999999999999999999999999999999996 5899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccC-CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-CCCccCCceeeeeeCCEEEEEEecC
Q 007878 393 CRVYGKPELGRIAADNLFKLD-PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD-VGIKKGAGCSWISVKNRIHIFQAKD 470 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (586)
|+++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|.+ .|+.|+...+... +..|
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l----i~~l---- 472 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM----IELL---- 472 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH----HHHH----
Confidence 999999999999999999876 55789999999999999999999999999986 6888875333222 2122
Q ss_pred CCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcEEEEecccccCCcc
Q 007878 471 TSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCH 550 (586)
Q Consensus 471 ~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~ 550 (586)
...+..+++ .+.+++.+..||..++..-+..+.+.+.+..-.+.....+++.+...+..+.+++.+..+|+..
T Consensus 473 ~r~G~~~eA-------~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 473 GREGLLDEA-------YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HhcCCHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 123333333 2334566889998776655555543332211111111234555554555666778889999999
Q ss_pred hhhHhhccccCceEE-------EecCCccceeccccc
Q 007878 551 SAFKFISGIVGREVI-------VRDNNRFHRFWDGYC 580 (586)
Q Consensus 551 ~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~~ 580 (586)
+|.+++..|..+.+- +.-.+..|.|..|-.
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999999998887653 223455677766643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-27 Score=264.75 Aligned_cols=425 Identities=11% Similarity=0.030 Sum_probs=299.8
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHc
Q 007878 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVL 88 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 88 (586)
....++..+.+.|+++.|..+++.+.+.. ++++.++..+...|.+.|++++|.+.|+++.+ .+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 34456666777788888888888777643 55667777788888888888888888876543 344556667777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007878 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.|++++|.+.|+++...+. .+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+
T Consensus 512 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888888887776532 255667777777777788888888877777664 44566677777777888888888877
Q ss_pred HhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007878 169 FDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 169 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
++.+.. .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+..+.
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 667 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD- 667 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 777643 355677777777777888888888877776643 334556666777777777788887777777765543
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+...+..++..+.+.|++++|.++++.+.+ .+...|..+...+...|++++|.+.|+++.. . .|+..++..+.
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~~~l~ 743 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--R--APSSQNAIKLH 743 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h--CCCchHHHHHH
Confidence 566777777777777777777777777754 3455666677777777777777777777766 2 35556666677
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
.++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ +
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 7777777777777777777653 2445667777777777777777777777776 222356667777777777777 6
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
+|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677777777777777777777777777777777777777777776543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-26 Score=261.04 Aligned_cols=426 Identities=10% Similarity=-0.041 Sum_probs=344.3
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHH
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISN 85 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 85 (586)
+...+..+...+...|+++.|...+..+.+.. +........++..|.+.|++++|.++++.+.. ++..+|+.+...
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 34456666777788889999999998888765 33445666778888899999999998887754 456778888888
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007878 86 AVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 165 (586)
+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...|.+.|+.++|
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998877432 245566777788888899999999999888775 55677888888999999999999
Q ss_pred HHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC
Q 007878 166 KVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKAC 242 (586)
Q Consensus 166 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (586)
...|+++.. .+...+..++..|...|++++|+.+++++.... +.+..++..+..++...|++++|...+..+.+..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999888743 345677788888999999999999999887643 4567788888888889999999999998888776
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHH
Q 007878 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLV 319 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~ 319 (586)
+. +...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+ .. +++...+.
T Consensus 632 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~ 707 (899)
T TIGR02917 632 PD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QH-PKAALGFE 707 (899)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC-cCChHHHH
Confidence 43 567788888889999999999999988754 4567888888889999999999999999887 33 34667777
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 007878 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYG 397 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~ 397 (586)
.+...+...|++++|...|+.+... .|+..++..+...+.+.|++++|.+.++++ ..+.+..++..+...|...|
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 8888888999999999999888643 566677888888899999999999888887 23346677888888888899
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.++|...++++.+..|+++..+..++.++...|+ .+|..+++++.+.
T Consensus 785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999999999999999888888899999999988 8899988888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-30 Score=207.83 Aligned_cols=106 Identities=59% Similarity=0.994 Sum_probs=96.6
Q ss_pred ceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhh--------hhhhhHHHHHHHH
Q 007878 453 GCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEK--------MTEVGHHSEKIAL 524 (586)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 524 (586)
||+|+.+ |.|.+++.+||+. .+..+|...|+.|++..+.|+++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899875 9999999999976 566778889999999999998887765 5678999999999
Q ss_pred HhcccCCCCCCcEEEEecc-cccCCcchhhHhhccccCceEEEecCCccceec
Q 007878 525 AFGLIAIPPGVPIRITKNL-RICGDCHSAFKFISGIVGREVIVRDNNRFHRFW 576 (586)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 576 (586)
+||++++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899998 999999999999999999999999999999996
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=185.91 Aligned_cols=377 Identities=15% Similarity=0.134 Sum_probs=210.8
Q ss_pred hhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HH
Q 007878 46 FVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN-AC 121 (586)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~ 121 (586)
.+|+.+.+.+-..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.+...+-+. ..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHH
Confidence 3455555555556666666666655543 2344565666666666666666666655554 3444443322222 22
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHH
Q 007878 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKND---VSWCSMLVVYVQNYEEENGCQ 198 (586)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~ 198 (586)
...|++++|...+.++++.. +--..+|+.|...+-..|++..|..-|++...-|+ ..|-.|...|-..+.+++|+.
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 23455666666665555552 12234556666666666666666666665544332 345555556666666666666
Q ss_pred HHHHHHHCCCCCC-HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 007878 199 MFLTARREGVEPK-DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-- 275 (586)
Q Consensus 199 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 275 (586)
.|.+... ..|+ ...+..+...|...|.++.|...+++.++..+. -...|+.|..++-..|++.+|.+.+.+...
T Consensus 274 ~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 6555544 2343 334444555555666666666666666554433 244566666666666666666666665543
Q ss_pred -CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hH
Q 007878 276 -RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AE 352 (586)
Q Consensus 276 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 352 (586)
....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++.. .++|+ ..
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 2234555566666666666666666666655 3454 3455666666666666666666666654 45555 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
.|+.+...|-..|+.+.|.+.+.+. .+.|. ...++.|.+.+...|+..+|++.++.+++++|+.+.+|..++..+.-.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 5666666666666666666666555 44443 234555666666666666666666666666666666666555554444
Q ss_pred CChHH
Q 007878 431 GRWEE 435 (586)
Q Consensus 431 g~~~~ 435 (586)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 44443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-19 Score=201.26 Aligned_cols=416 Identities=11% Similarity=0.045 Sum_probs=325.2
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCc---ccHHHH----------
Q 007878 18 KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNL---ATWNAY---------- 82 (586)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 82 (586)
..+...|++++|...++..++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34567899999999999999865 45778889999999999999999999988754 322 223222
Q ss_pred --HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007878 83 --ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN 160 (586)
Q Consensus 83 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 160 (586)
...+.+.|++++|+..|++...... .+...+..+...+...|++++|++.++++++.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 3356788999999999999988532 245567778888999999999999999999874 445666777777775 46
Q ss_pred ChHHHHHHHhcCCCCC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcccC
Q 007878 161 EVGLAKVVFDGIIDKN------------DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEP-KDFMISSVLSACARIAG 227 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~ 227 (586)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999988775432 123455677888999999999999999875 45 45566778888999999
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Ce---------eHHHHHHHHHHhcCCH
Q 007878 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER----NL---------VCWNAIIGGYAHQGHA 294 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---------~~~~~li~~~~~~g~~ 294 (586)
+++|...++.+++..+. +...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999886654 4555555666778899999999999988642 11 1123456678899999
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHH
Q 007878 295 DMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEI 373 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 373 (586)
++|.++++. . +++...+..+...+.+.|++++|+..|+.+.+. .| +...+..++..|...|++++|++.
T Consensus 590 ~eA~~~l~~--~-----p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 590 AEAEALLRQ--Q-----PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHHHh--C-----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999872 1 235566777888999999999999999999854 44 478889999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHHHHHH-
Q 007878 374 IKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS------GNHVLLSNMFAATGRWEEADLVRKEMK- 444 (586)
Q Consensus 374 ~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~- 444 (586)
++.. ...| +..++..+..++...|++++|..+++++.+..|+++ ..+..++.++...|++++|...+++..
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 3444 455677788889999999999999999999876543 355567899999999999999999875
Q ss_pred hCCCcc
Q 007878 445 DVGIKK 450 (586)
Q Consensus 445 ~~g~~~ 450 (586)
..|+.|
T Consensus 740 ~~~~~~ 745 (1157)
T PRK11447 740 ASGITP 745 (1157)
T ss_pred hcCCCC
Confidence 345544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-21 Score=183.37 Aligned_cols=358 Identities=14% Similarity=0.159 Sum_probs=308.8
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHH
Q 007878 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS-VCNGL 152 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l 152 (586)
-..+|..+...+-..|++++|+.+|+.|.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 3457888999999999999999999999984 45 4668999999999999999999999999887 45543 44455
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCc
Q 007878 153 VDFYGKCNEVGLAKVVFDGIIDKN---DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGL 228 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~ 228 (586)
.......|++++|...+.+..+.+ .+.|+.|...+-.+|+...|+..|++... +.|+- ..|..+...+...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcc
Confidence 566667899999999887765433 46899999999999999999999999876 45653 4788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-eeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007878 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN-LVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
+.|...+.+.....+. ...++..|.-.|-..|.++-|...+++..+ |+ ..+||.|..++-..|+..+|.+.|.+..
T Consensus 269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999888776544 456677788889999999999999999875 43 4699999999999999999999999998
Q ss_pred hccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 007878 306 SMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT 382 (586)
Q Consensus 306 ~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 382 (586)
. ..|+ ....+.|...+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+.-+++. .++|+
T Consensus 348 ~----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 348 R----LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred H----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 8 4466 5788999999999999999999999886 55676 677899999999999999999999987 88887
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 383 I-SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 383 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
. ..++.+...|...|+++.|.+.+.+++..+|.-..++..|+.+|..+|+..+|..-++...+.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 4 689999999999999999999999999999999999999999999999999999999988763
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-18 Score=198.34 Aligned_cols=416 Identities=12% Similarity=0.059 Sum_probs=259.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhh-hHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCC
Q 007878 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFV-GCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGR 91 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 91 (586)
..+.+...|++++|.+.++.+.+.. +|+... ...+.......|+.++|++.|+++.. | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 3445778899999999999988654 344321 11122222345889999999988865 3 44567778888888899
Q ss_pred hhHHHHHHHHHHHCCC------------------C--------------CChhhH---------------------HHHH
Q 007878 92 PKNAIDAFINLRRTGG------------------E--------------PDLITF---------------------CAFL 118 (586)
Q Consensus 92 ~~~A~~~~~~m~~~g~------------------~--------------p~~~t~---------------------~~ll 118 (586)
.++|+..|+++..... . |+...+ ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999888754211 0 111000 0112
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh---hhHHHH----------
Q 007878 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--KND---VSWCSM---------- 183 (586)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 183 (586)
.++...|++++|...++++++.. +.+..++..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 33556788888888888888774 44677888888889999999999988887643 221 123222
Q ss_pred --HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007878 184 --LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 184 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
...+.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.++++++..+. +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 345678888999999998888753 234556666778888889999999999888876544 3444444554443 23
Q ss_pred CHHHHHHHHhhCCCCC------------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhcc
Q 007878 262 SIQDAEIAFNKMPERN------------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRA 328 (586)
Q Consensus 262 ~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~ 328 (586)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+ ..|+ ...+..+...|.+.
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~----~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA----LDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHc
Confidence 4555555554443210 11233334445555666666666666555 2233 33444555555566
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hHHH--------------------------------------------HHHHHHHHh
Q 007878 329 GAVEKGMKIFYSMTLKYGIKPG-AEHY--------------------------------------------ACVVDLLGR 363 (586)
Q Consensus 329 g~~~~a~~~~~~~~~~~~~~p~-~~~~--------------------------------------------~~li~~~~~ 363 (586)
|++++|...++.+.+. .|+ ...+ ..+.+.+..
T Consensus 509 G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666666666555432 121 1111 122334455
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 364 AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 364 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
.|+.++|.++++.-+ ++...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++..
T Consensus 586 ~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666666655332 233455666666777777888888888777777777777777777777777777777777766
Q ss_pred Hh
Q 007878 444 KD 445 (586)
Q Consensus 444 ~~ 445 (586)
.+
T Consensus 664 l~ 665 (1157)
T PRK11447 664 PA 665 (1157)
T ss_pred hc
Confidence 54
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-18 Score=183.76 Aligned_cols=414 Identities=9% Similarity=-0.022 Sum_probs=275.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCChh
Q 007878 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGRPK 93 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 93 (586)
-..+.+.|+++.|...|...++. .|++..|..+...|.+.|++++|+..++...+ | +...|..+..+|...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455667777777777776653 35566666677777777777777777666543 2 3445666666777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007878 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 173 (586)
+|+.-|......+.. +......++..+.. ..+........+.. +++...+..+.. |........+..-++...
T Consensus 212 eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 212 DALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 777766655433211 11111111111111 11222222222221 222222222222 222111111111111111
Q ss_pred CCCh---hhHHHHHHHH---HHcCChHHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007878 174 DKND---VSWCSMLVVY---VQNYEEENGCQMFLTARREG-VEP-KDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 174 ~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
+.+. ..+..+...+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...+...++..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 1111 1111111111 23478999999999998765 334 3445677777788899999999999999887643
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCV 321 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~l 321 (586)
+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+ +.|+ ...+..+
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~----l~P~~~~~~~~l 439 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID----LDPDFIFSHIQL 439 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCccCHHHHHHH
Confidence 466788889999999999999999998754 4567899999999999999999999999988 3354 6677788
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHH
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-S-------VWGALLNA 392 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~ 392 (586)
..++.+.|++++|+..|+...+. .+.+...|+.+...+...|++++|++.|++. .+.|+. . .++..+..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88999999999999999998753 2334788899999999999999999999986 444421 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|++++|..+++++++++|++...+..++.++...|++++|.+.|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444699999999999999999999989999999999999999999999998763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=183.24 Aligned_cols=288 Identities=11% Similarity=0.072 Sum_probs=181.5
Q ss_pred HhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhcccCcHH
Q 007878 157 GKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK---DFMISSVLSACARIAGLEL 230 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~ 230 (586)
...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+.+.|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444221 222344444444444555555554444443221111 1233444444455555555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC------eeHHHHHHHHHHhcCCHHHHHHHHH
Q 007878 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN------LVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
|..++..+.+... .+..+++.++..|.+.|++++|.+.|+.+.+ |+ ...|..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555544322 2344555556666666666666666655543 11 1134456666777888888888888
Q ss_pred HhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007878 303 EMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVDLLGRAGLVDRAYEIIKEM-P 378 (586)
Q Consensus 303 ~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 378 (586)
++.+ . .|+ ...+..+...+.+.|++++|.++|+++... .|+ ...++.++.+|.+.|++++|.+.++++ .
T Consensus 205 ~al~--~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 205 KALA--A--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHh--H--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8876 2 243 456667778888888888888888888643 333 456778888888888999988888887 4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh---cCChHHHHHHHHHHHhCCCccCCc
Q 007878 379 MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA---TGRWEEADLVRKEMKDVGIKKGAG 453 (586)
Q Consensus 379 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 453 (586)
..|+...+..+...+.+.|++++|..+++++.+..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5677777788888899999999999999999988887654 4444444432 568999999999999999988885
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=183.73 Aligned_cols=282 Identities=14% Similarity=0.143 Sum_probs=154.6
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChH
Q 007878 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN---VSVCNGLVDFYGKCNEVG 163 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~ 163 (586)
...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344555555555555554321 1233444455555555555555555555544321111 134455555666666666
Q ss_pred HHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhcccCcHHHHHHHH
Q 007878 164 LAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD----FMISSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 164 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~ 236 (586)
+|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++. ..+..+...+.+.|++++|...+.
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666655543 23445556666666666666666666666554322211 123344445556666666666666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC--eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007878 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN--LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
++.+..+. +...+..+...|.+.|++++|.++|+++.+ |+ ..+++.++.+|...|+.++|...++++.+ . .
T Consensus 205 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~--~ 279 (389)
T PRK11788 205 KALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E--Y 279 (389)
T ss_pred HHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--C
Confidence 66654432 344555566666666666666666666553 22 23456666666666666666666666665 2 3
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh---cCChHHHHHHHHhC
Q 007878 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR---AGLVDRAYEIIKEM 377 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m 377 (586)
|+...+..+...+.+.|++++|..+++.+.+. .|+...+..++..+.. .|+.++|+.++++|
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 55555566666666666666666666666532 5666666666655543 34666666666655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-17 Score=177.15 Aligned_cols=366 Identities=12% Similarity=0.012 Sum_probs=278.0
Q ss_pred hcCCchHHHHHhccCCC------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHH
Q 007878 57 KTGLKDDADKMFDEMPE------RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLG 130 (586)
Q Consensus 57 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 130 (586)
+..+++.-.-+|...++ .+..-...++..+.+.|++++|+.+++........+ ...+..++.+....|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 55566666666666654 122334456777888999999999999988765443 33444555666678999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 007878 131 RQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207 (586)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 207 (586)
.+.++.+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998885 45677888889999999999999999988744 356688888999999999999999999887653
Q ss_pred CCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHH
Q 007878 208 VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAI 284 (586)
Q Consensus 208 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~l 284 (586)
|+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|++..+ .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333222222334778899999999999888776545555566667888899999999999998764 456677888
Q ss_pred HHHHHhcCCHHH----HHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 007878 285 IGGYAHQGHADM----ALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVV 358 (586)
Q Consensus 285 i~~~~~~g~~~~----A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 358 (586)
...|...|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++..... .|+ ...+..+.
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La 325 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ----FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 889999999885 8999999987 3354 668888899999999999999999998753 454 56677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 007878 359 DLLGRAGLVDRAYEIIKEM-PMRPTISVWG-ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 436 (586)
..|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++.+..|++. ...+++|
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea 393 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEG 393 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHH
Confidence 9999999999999999987 4556654443 356678899999999999999999988753 2344455
Q ss_pred HHHHHHHHh
Q 007878 437 DLVRKEMKD 445 (586)
Q Consensus 437 ~~~~~~m~~ 445 (586)
...+....+
T Consensus 394 ~~~~~~~~~ 402 (656)
T PRK15174 394 LLALDGQIS 402 (656)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-16 Score=173.12 Aligned_cols=396 Identities=8% Similarity=-0.081 Sum_probs=232.7
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcC
Q 007878 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLG 89 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 89 (586)
..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..+...+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3445566677788888888888877633 44555678888888888888888888887432 3455667777778888
Q ss_pred CChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007878 90 GRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
|++++|+..+++.... .| +.. +..+..++...|+.++|...++++++.. +.+...+..+..++.+.|..+.|.+.
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 8888888888888765 33 334 6667777778888888888888888774 34556666677778888888888888
Q ss_pred HhcCCCCChh--------hHHHHHHHHH-----HcCCh---HHHHHHHHHHHHC-CCCCCHh-HHH----HHHHHHhccc
Q 007878 169 FDGIIDKNDV--------SWCSMLVVYV-----QNYEE---ENGCQMFLTARRE-GVEPKDF-MIS----SVLSACARIA 226 (586)
Q Consensus 169 ~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~ 226 (586)
++.... ++. ....++.... ..+++ ++|++.++.+... ...|+.. .+. ..+.++...|
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 877655 211 1111222211 11223 5667777766643 1222221 111 1123344556
Q ss_pred CcHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-----eeHHHHHHHHHHhcCCHHHHH
Q 007878 227 GLELGRSVHAVAVKACVE-GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN-----LVCWNAIIGGYAHQGHADMAL 298 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-----~~~~~~li~~~~~~g~~~~A~ 298 (586)
+.++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+ |. ...+..+..++.+.|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 677777777776665532 221 122245566667777777777666543 11 123444555666667777777
Q ss_pred HHHHHhhhccC---------CCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007878 299 SSFEEMTSMRC---------EAVPNY---VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 299 ~~~~~m~~~~~---------g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
++++++..... .-.|+. ..+..+...+...|+.++|+..++++... .+.+...+..+...+...|+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 77766665100 001221 12334444555556666666666665432 22234555555556666666
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 367 VDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 367 ~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
+++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 66666666555 33343 33444444455555666666666666666666554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-16 Score=173.09 Aligned_cols=398 Identities=8% Similarity=-0.020 Sum_probs=299.5
Q ss_pred CCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHH
Q 007878 42 IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAF 117 (586)
Q Consensus 42 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 117 (586)
+-++....-.+......|+.++|++++..... .+...+..+...+...|++++|+.+|++.... .| +......+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 44555566677888899999999999998764 33445888999999999999999999998874 34 45566777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChH
Q 007878 118 LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--K-NDVSWCSMLVVYVQNYEEE 194 (586)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 194 (586)
...+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...+++..+ | +...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 788899999999999999999884 44566 88899999999999999999998854 3 4556677888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHh------HHHHHHHHHh-----cccCc---HHHHHHHHHHHHh-CCCCchh--HHHH---HH
Q 007878 195 NGCQMFLTARREGVEPKDF------MISSVLSACA-----RIAGL---ELGRSVHAVAVKA-CVEGNIF--VGSA---LV 254 (586)
Q Consensus 195 ~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~--~~~~---li 254 (586)
+|++.++.... .|+.. ....++.... ..+.+ ++|...++.+.+. ...|+.. .... .+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99998876553 33320 1111222221 11223 6778888888764 2222221 1111 12
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC--eeH--HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccC
Q 007878 255 DMYGKCGSIQDAEIAFNKMPERN--LVC--WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAG 329 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g 329 (586)
..+...|++++|+..|+.+.+.+ ... -..+...|...|++++|+..|+++........+ .......+..++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34457799999999999988632 122 222567899999999999999998762111101 1345566777889999
Q ss_pred CHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007878 330 AVEKGMKIFYSMTLKYG----------IKPG---AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACR 394 (586)
Q Consensus 330 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 394 (586)
++++|..+++.+..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999875310 1123 235567788999999999999999997 3334 5678889999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|+..++++++++|++...+..++..+...|++++|..+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999874
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-16 Score=169.07 Aligned_cols=213 Identities=12% Similarity=-0.018 Sum_probs=159.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007878 226 AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555555544443 3333333334445678888888888887653 4455666677778888888888888888
Q ss_pred hhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 007878 304 MTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP 381 (586)
Q Consensus 304 m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 381 (586)
..+ .. |+. ..+..+.......|++++|...++...+ +.|+...|..+...+.+.|++++|+..+++. ...|
T Consensus 568 AL~--l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 568 AEQ--RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHh--cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 877 32 443 3333444455566999999999998874 4678888899999999999999999999987 5555
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 382 T-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 382 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+ ...+..+..++...|+.++|+..++++++..|+++..+..++.++...|++++|...+++..+..
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4 55677777789999999999999999999999999999999999999999999999999987643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-16 Score=170.74 Aligned_cols=321 Identities=8% Similarity=-0.004 Sum_probs=242.7
Q ss_pred HHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCC
Q 007878 50 SAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCS 125 (586)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 125 (586)
.++..+.+.|++++|..+++.... .+...+..++.+....|++++|+..|+++... .| +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 345566788999999988877643 23445555666777789999999999998874 34 4456777777888889
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007878 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII--DK-NDVSWCSMLVVYVQNYEEENGCQMFLT 202 (586)
Q Consensus 126 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (586)
++++|...++.+++.. +.+...+..+...+...|++++|...++.+. .| +...+..+ ..+.+.|++++|+..++.
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999888774 4457788888889999999999998887663 22 33334333 347888999999999998
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHhhCCC---
Q 007878 203 ARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD----AEIAFNKMPE--- 275 (586)
Q Consensus 203 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~--- 275 (586)
+......++......+..++...|+.++|...+..+.+..+. +...+..+...|...|++++ |...|++..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 877543344445555567788889999999999998887654 67778888999999999885 7888888764
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH-H
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE-H 353 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~ 353 (586)
.+...+..+...+.+.|++++|+..+++... . .|+ ...+..+..++.+.|++++|+..|+.+... .|+.. .
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~ 354 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLA--T--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKW 354 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHH
Confidence 3456788888889999999999999999887 2 354 556677788888999999999999888754 55543 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRPT 382 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 382 (586)
+..+..++...|+.++|.+.|++. ...|+
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 444567788999999999999886 33343
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-15 Score=157.73 Aligned_cols=420 Identities=9% Similarity=-0.009 Sum_probs=305.7
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCCh--hhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHH---HHHHcCCChhH
Q 007878 20 SSALHIPVTGKQLHALALKSGQIHDV--FVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYI---SNAVLGGRPKN 94 (586)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~ 94 (586)
..+.|++..|...+.+..+.. |+. .++ .++..+...|+.++|+..+++...|+...+..+. ..+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 357899999999999998865 442 344 8888899999999999999998877555554443 46777899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 007878 95 AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID 174 (586)
Q Consensus 95 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 174 (586)
|+++|+++.+.... |...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999886433 4566667778889999999999999998877 45555565555555556677669999998854
Q ss_pred --C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH------HHHHH-HH----hcccC---cHHHHHHHHH
Q 007878 175 --K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMI------SSVLS-AC----ARIAG---LELGRSVHAV 237 (586)
Q Consensus 175 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~-~~----~~~~~---~~~a~~~~~~ 237 (586)
| +...+..+..++.+.|-...|+++.++-... +.|...-. ...+. +. ..... .+.|..-++.
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 3 4566778888999999999998776543211 11111111 11110 00 01112 2334444444
Q ss_pred HHHh-CCCCc--hhHHHHH---HHHHHhcCCHHHHHHHHhhCCCC----CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 007878 238 AVKA-CVEGN--IFVGSAL---VDMYGKCGSIQDAEIAFNKMPER----NLVCWNAIIGGYAHQGHADMALSSFEEMTSM 307 (586)
Q Consensus 238 ~~~~-~~~~~--~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (586)
+... +..|. .....+. +-++.+.|++.++++.|+.+..+ ...+--++.++|...+++++|+.+|+.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 4431 22222 1222333 44677889999999999999842 2235566889999999999999999999762
Q ss_pred cCC---CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCChHHHH
Q 007878 308 RCE---AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG----------IKPG---AEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 308 ~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 371 (586)
... ..++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 111 122334457889999999999999999999975211 0122 344566788899999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 372 EIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 372 ~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.++++ ... -|...+..+...+...|.+.+|+..++.+..++|++..+....+..+...|+|.+|..+.+...+.
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998 333 478888999999999999999999999999999999999999999999999999999999887664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-14 Score=158.61 Aligned_cols=427 Identities=10% Similarity=-0.009 Sum_probs=305.3
Q ss_pred CCcccHHHH-HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHh-cCCchHHHHHhccCCCCCcccHHHHHHH
Q 007878 8 PNDFTFPCL-FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK-TGLKDDADKMFDEMPERNLATWNAYISN 85 (586)
Q Consensus 8 p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~ 85 (586)
|+..+.... .+.+...++++.+..++..+.+.+ +.+..-...|-.+|.. .++ ++|..++....+.|+..+..+...
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~ 256 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATA 256 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHH
Confidence 345555555 788999999999999999999987 4445556667778877 466 888888776555678888899999
Q ss_pred HHcCCChhHHHHHHHHHHHCCCC-CChhhHHHH------------------------------HHHHhc-----------
Q 007878 86 AVLGGRPKNAIDAFINLRRTGGE-PDLITFCAF------------------------------LNACSD----------- 123 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l------------------------------l~~~~~----------- 123 (586)
|.+.|+.++|..+++++...-.. |...++.-+ +..+.+
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999988887532111 222222111 111111
Q ss_pred ----------------------------------------------------CCChHHHHHHHHHHHHh-C-CCCChhHH
Q 007878 124 ----------------------------------------------------CSLLQLGRQLHGFLVRS-G-FDGNVSVC 149 (586)
Q Consensus 124 ----------------------------------------------------~~~~~~a~~~~~~~~~~-g-~~~~~~~~ 149 (586)
.|+.++|.+++...... + -..+....
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 337 ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 22233333333333221 0 01123344
Q ss_pred HHHHHHHHhcCC---hHHHHHH-------------------------HhcCCC---C--ChhhHHHHHHHHHHcCChHHH
Q 007878 150 NGLVDFYGKCNE---VGLAKVV-------------------------FDGIID---K--NDVSWCSMLVVYVQNYEEENG 196 (586)
Q Consensus 150 ~~ll~~~~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A 196 (586)
+-|+..|.+.+. ..++..+ +..... + +...|..+..++.. +++++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 456666666655 2222222 111111 1 44566667766666 788889
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007878 197 CQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276 (586)
Q Consensus 197 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 276 (586)
+..|.+.... .|+......+..++...|++++|...++.+.... |+...+..+...+.+.|++++|...|+...+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9988777664 4776554455556678999999999999876653 33344566778889999999999999987764
Q ss_pred CeeHHHHH---HHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hH
Q 007878 277 NLVCWNAI---IGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AE 352 (586)
Q Consensus 277 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 352 (586)
+...++.. .......|++++|+..+++..+ ..|+...+..+..++.+.|++++|+..|+.... ..|+ ..
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~ 644 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSN 644 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHH
Confidence 33333333 2334455999999999999988 458888899999999999999999999999974 3565 67
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
.++.+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....++.....
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 7888888999999999999999987 4445 5678999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007878 431 GRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 431 g~~~~a~~~~~~m~~~g~ 448 (586)
.+++.|.+-+++.-....
T Consensus 725 ~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 725 FNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHhhcCc
Confidence 999999998887765443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-15 Score=158.71 Aligned_cols=354 Identities=8% Similarity=-0.058 Sum_probs=253.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007878 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK 158 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 158 (586)
+......+.+.|++++|+..|++... +.|+...|..+..++.+.|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33456677888999999999988876 46777788888888888899999999998888774 4456778888889999
Q ss_pred cCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----------------------------
Q 007878 159 CNEVGLAKVVFDGIIDKN---DVSWCSMLVVYVQNYEEENGCQMFLTARREG---------------------------- 207 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------- 207 (586)
.|++++|..-|......+ ......++..+.. ..+...........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999887765442111 1111111111111 11111111111100
Q ss_pred ---CCCCH-hHHHHHHHH---HhcccCcHHHHHHHHHHHHhC-CCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C
Q 007878 208 ---VEPKD-FMISSVLSA---CARIAGLELGRSVHAVAVKAC-VEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R 276 (586)
Q Consensus 208 ---~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 276 (586)
..|+. ..+..+... ....+.+++|...+...++.+ ..| ....++.+...|...|++++|...|++..+ |
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00100 000000000 122357889999999988765 222 456788888999999999999999999764 4
Q ss_pred C-eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 007878 277 N-LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEH 353 (586)
Q Consensus 277 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 353 (586)
+ ..+|..+...+...|++++|+..|++..+ . .| +...+..+...+...|++++|...|+...+ +.|+ ...
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~ 435 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALK--L--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFS 435 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHH
Confidence 3 45788888899999999999999999988 3 34 467888899999999999999999999974 3554 677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH-------HH
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL-------LS 424 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~ 424 (586)
+..+...+.+.|++++|+..|++. ...| +...|+.+...+...|++++|+..+++++++.|.+...+.. ..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 888899999999999999999987 4444 46788889999999999999999999999998875433321 12
Q ss_pred HHHhhcCChHHHHHHHHHHHhC
Q 007878 425 NMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+...|++++|.+++++....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc
Confidence 2334479999999999998764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-13 Score=127.06 Aligned_cols=392 Identities=14% Similarity=0.144 Sum_probs=275.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHh--cCCch-------------------------H
Q 007878 11 FTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK--TGLKD-------------------------D 63 (586)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~-------------------------~ 63 (586)
.+=+.+++.- ..|.+..+.-+++.|.+.|.+.+..+--.|...-+- ..++- -
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3455666543 467899999999999999988888776666554322 11111 1
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 007878 64 ADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFD 143 (586)
Q Consensus 64 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 143 (586)
|.-+|+.. .++..+|.+||.|+++--..+.|.++|++-.....+.+..+||.++.+-+ +..++++..+|+...+.
T Consensus 196 AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcC
Confidence 22223222 24667899999999999999999999999998888999999999998754 33458899999999999
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHH----hcC----CCCChhhHHHHHHHHHHcCChHH-HHHHHHHHHH----CCCCC
Q 007878 144 GNVSVCNGLVDFYGKCNEVGLAKVVF----DGI----IDKNDVSWCSMLVVYVQNYEEEN-GCQMFLTARR----EGVEP 210 (586)
Q Consensus 144 ~~~~~~~~ll~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p 210 (586)
||..|+|+++++..+.|+++.|.+.+ .+| .+|...+|.-+|..+.+.++..+ |..++.+++. ..++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999998876554 444 56899999999999999988755 4555555543 22333
Q ss_pred ----CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 007878 211 ----KDFMISSVLSACARIAGLELGRSVHAVAVKAC----VEGN---IFVGSALVDMYGKCGSIQDAEIAFNKMPE---- 275 (586)
Q Consensus 211 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 275 (586)
|..-|.+.++.|.+..+.+.|.+++....... +.|+ ...|..+....+....++.-...|+.|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 55678889999999999999999988765421 2222 34566778888899999999999999874
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC---------CHH-----HHHHHH---
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG---------AVE-----KGMKIF--- 338 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g---------~~~-----~a~~~~--- 338 (586)
|+..+-..++.+..-.|.++-.-+++..|+. .|..-+.....-++.-+++.. ++. -|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~--~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKE--YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHH--hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788888888888888888888877 443222222222232233222 000 011111
Q ss_pred ----HHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007878 339 ----YSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPTISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 339 ----~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
.++. ..+-.....++..-.+.|.|+.++|.+++.-. +..|......-|+.+-.+.++...|..+++
T Consensus 509 e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 509 ESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQ 585 (625)
T ss_pred HhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 1121 22334556777778888999999998887665 333444444456666677778888888888
Q ss_pred HHhccC
Q 007878 408 NLFKLD 413 (586)
Q Consensus 408 ~~~~~~ 413 (586)
.+...+
T Consensus 586 ~a~~~n 591 (625)
T KOG4422|consen 586 LASAFN 591 (625)
T ss_pred HHHHcC
Confidence 776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-13 Score=144.85 Aligned_cols=385 Identities=12% Similarity=0.086 Sum_probs=278.9
Q ss_pred HHHHhcCCchHHHHHhccCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHhcCCC
Q 007878 53 DMYSKTGLKDDADKMFDEMPERNLA---TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF---CAFLNACSDCSL 126 (586)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~ 126 (586)
-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3455899999999999998763332 23388888889999999999999987 3433333 333456778899
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHH--cCChHHHHHHHHHHH
Q 007878 127 LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQ--NYEEENGCQMFLTAR 204 (586)
Q Consensus 127 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 204 (586)
+++|.++++++++.. +.+..++..++..|...++.++|++.++++...++.....+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999985 44577788889999999999999999999976555433334445544 566666999999999
Q ss_pred HCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchh------HHHHHHHH-----HHhcCCH---HHHHHHH
Q 007878 205 REGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIF------VGSALVDM-----YGKCGSI---QDAEIAF 270 (586)
Q Consensus 205 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~-----~~~~g~~---~~A~~~~ 270 (586)
+.. +-+...+.....++.+.|....|.++..+-... +.+... ....++.. -....++ +.|..-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 864 335666677888889999888888766542211 110000 00011110 0011222 3344444
Q ss_pred hhCCC-----CCee-HHH----HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007878 271 NKMPE-----RNLV-CWN----AIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 271 ~~m~~-----~~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
+.+.. |... .|. -.+-++...|+..++++.|+.+.. .+.+....+-..+..+|...+.+++|..+|..
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~--~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA--EGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh--cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44332 3222 222 246678889999999999999998 66544455778899999999999999999999
Q ss_pred hHHhcC----CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC-C---------------CCHH-HHHHHHHHHHHcCCH
Q 007878 341 MTLKYG----IKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPM-R---------------PTIS-VWGALLNACRVYGKP 399 (586)
Q Consensus 341 ~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~---------------p~~~-~~~~ll~~~~~~~~~ 399 (586)
+....+ ..++......|.-+|..++++++|..+++++.- . ||-. ....++..+.-.|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 865422 233455567889999999999999999999811 1 2222 234456668889999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.+|++.++++....|.|......++.++...|...+|++.++.....
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-13 Score=139.46 Aligned_cols=430 Identities=11% Similarity=0.017 Sum_probs=302.2
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCC--hhhhHHHHHHHHhcCCchHHHHHhccCCC--CCc--ccHHHH
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHD--VFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNL--ATWNAY 82 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l 82 (586)
|++..+.|..-+.--|++..+..+...++....... ...|--+.++|-..|++++|...|.+... +|- ..+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 566677777777777888888888888877642221 23466678888888888888888876554 332 334456
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007878 83 ISNAVLGGRPKNAIDAFINLRRTGGEPD-LITFCAFLNACSDCS----LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYG 157 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 157 (586)
...+.+.|+.+.+...|+...+. .|| ..|...+-..|+..+ ..+.|..++....+.- +.|...|-.+..+|-
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 67788888888888888888764 344 456666666666553 4556666666666553 456667777777666
Q ss_pred hcCChHHHHHHHhc--------CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHh------HHHHHHH
Q 007878 158 KCNEVGLAKVVFDG--------IIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE---GVEPKDF------MISSVLS 220 (586)
Q Consensus 158 ~~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~ 220 (586)
...-+.. +.+|.. +....+...|.+...+...|++++|...|...... ...+|.. +--.+..
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 5543332 443332 22345667888888899999999999999887654 2233432 2222334
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHH
Q 007878 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 297 (586)
..-..++.+.|.+.|..+++..+. -+..|--+.-+--..+...+|...+....+ .++..|.-+...|.....+..|
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 445667889999999999887543 222232333222233567788888887664 6777787777788888888888
Q ss_pred HHHHHHhhhccCCCCCCHHHHHHHHHHhhc------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007878 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSR------------AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 365 (586)
.+-|....+. ....+|..+..+|.+.|.. .+..++|+++|..+.+. -+.|...-|.+.-.++..|
T Consensus 584 ~k~f~~i~~~-~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 584 KKKFETILKK-TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccHHHHHHhh-hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhhcc
Confidence 8877777664 2334788888788776543 24578899999888752 3446777788888899999
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCchhHHHHHHHHhhcCChHHHHHHHH
Q 007878 366 LVDRAYEIIKEMP--MRPTISVWGALLNACRVYGKPELGRIAADNLFKLD--PNDSGNHVLLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 366 ~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (586)
++.+|.++|.+.. ..-+..+|-.+...|...|++-.|++.|+...+.. .+++.+...|+.++.+.|++.+|.+...
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999872 22345689999999999999999999999988853 4567788899999999999999999888
Q ss_pred HHHhC
Q 007878 442 EMKDV 446 (586)
Q Consensus 442 ~m~~~ 446 (586)
.....
T Consensus 741 ~a~~~ 745 (1018)
T KOG2002|consen 741 KARHL 745 (1018)
T ss_pred HHHHh
Confidence 77654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-13 Score=126.40 Aligned_cols=409 Identities=12% Similarity=0.086 Sum_probs=280.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhhh-HHHHHHHHhcCCchHHHHHhccCCC--CC------cccHHHHHHHH
Q 007878 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVG-CSAFDMYSKTGLKDDADKMFDEMPE--RN------LATWNAYISNA 86 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~ 86 (586)
|.+-|.......+|...++-+++...-|+.... ..+.+.+.+...+.+|++++..... |+ +...|.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344455666778888899989888877776543 3456778888899999998764432 22 22344444568
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--------HHHHHHHHHHh
Q 007878 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS--------VCNGLVDFYGK 158 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--------~~~~ll~~~~~ 158 (586)
.+.|+++.|+..|+...+. .||..+-..|+-++...|+-++.++.|..++.....+|.. .-..|+.--.+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 8999999999999998774 6887765556656667799999999999998764333222 11222222222
Q ss_pred cCC-----------hHHH----HHHHhcCCCCChh---hHH------------------HHHHHHHHcCChHHHHHHHHH
Q 007878 159 CNE-----------VGLA----KVVFDGIIDKNDV---SWC------------------SMLVVYVQNYEEENGCQMFLT 202 (586)
Q Consensus 159 ~g~-----------~~~A----~~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~ 202 (586)
... .+++ .++..-...||-. -|. .-...|.++|+++.|+++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 211 1111 1222222233211 111 112457899999999999887
Q ss_pred HHHCCCCCCHhHHH--HHHHH----------------------------------HhcccCcHHHHHHHHHHHHhCCCCc
Q 007878 203 ARREGVEPKDFMIS--SVLSA----------------------------------CARIAGLELGRSVHAVAVKACVEGN 246 (586)
Q Consensus 203 m~~~g~~p~~~t~~--~ll~~----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (586)
..+..-+.-...-+ +++.. ....|++++|...+.+.+...-...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 76543221111111 11111 1124677888888888776554433
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~ 323 (586)
...|| +.-.+-+.|++++|++.|-++. ..++...-.+...|-...+..+|++++.+... -++.|+..+.-|..
T Consensus 525 ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ilskl~d 600 (840)
T KOG2003|consen 525 EALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHHHHHHHHH
Confidence 33444 3345677888999998887764 35666777777888888888999998877654 23445778888888
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHH
Q 007878 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNAC-RVYGKPEL 401 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~~~~~~ 401 (586)
.|-+.|+-.+|.+.+..--+ -++.+.++..-|..-|....-+++|+.+|++. -++|+.+-|..++..| ++.|++..
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999988765432 34557888888888888899999999999998 5679999999988775 66899999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007878 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
|..+++...+..|.+......|..++...|.
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999998887775
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-12 Score=130.95 Aligned_cols=433 Identities=9% Similarity=-0.016 Sum_probs=274.3
Q ss_pred CCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhc---CCchHHHHHhccCC---CCCccc
Q 007878 5 CISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKT---GLKDDADKMFDEMP---ERNLAT 78 (586)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~ 78 (586)
...||+..- +-.++.+.++.+.|+..|.+..+.. +.++.++-.|--+-... ..+..+..++...- ..|++.
T Consensus 196 ~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~ 272 (1018)
T KOG2002|consen 196 ACKADVRIG--IGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVA 272 (1018)
T ss_pred ccCCCccch--hhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHH
Confidence 345555432 2234567888899999998888764 23333333333222222 23445555554432 257778
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007878 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGE--PDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFY 156 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 156 (586)
.|.|-..|.-.|++..++.+...+...-.. .-...|-.+.+++-..|++++|.+.|-+..+..-..-+..+-.|..+|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 888888888889999999988888654311 123457788888888899999999887776663221134455678889
Q ss_pred HhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007878 157 GKCNEVGLAKVVFDGIID--K-NDVSWCSMLVVYVQNY----EEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
.+.|+++.+...|+.+.. | +..+...+...|+..+ ..+.|..++.+....- +.|...|..+...+-. ++..
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~ 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPW 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChH
Confidence 999999999988888743 2 3455566666676665 4456666666655542 3355566555555443 3333
Q ss_pred HHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCee------HHHHHHHHHHhcC
Q 007878 230 LGRSVHAVAV----KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-------RNLV------CWNAIIGGYAHQG 292 (586)
Q Consensus 230 ~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~------~~~~li~~~~~~g 292 (586)
....++..+. ..+-.+.+...|.+...+...|++++|...|+.... +|.. +--.+...+-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 3355554443 445557788888888888888999888888876542 2321 1222444555567
Q ss_pred CHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007878 293 HADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 293 ~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 371 (586)
+.+.|.+.|..+.+ . -|.. ..|..++...-..+...+|...++.... ....++..++.+.+.+.+...+..|.
T Consensus 511 ~~~~A~e~Yk~Ilk--e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILK--E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hhhHHHHHHHHHHH--H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccc
Confidence 78888888888877 2 2553 4455555444455777777777777764 33444555555666666666666666
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007878 372 EIIKEM----PMRPTISVWGALLNACRV------------YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 372 ~~~~~m----~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
+-|+.. ...+|..+.-+|.+.|.. .+..+.|++.|.++++.+|.|..+-+.++-+++..|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 644433 333566666666665432 2345667777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCC
Q 007878 436 ADLVRKEMKDVGI 448 (586)
Q Consensus 436 a~~~~~~m~~~g~ 448 (586)
|..+|.+.++...
T Consensus 665 A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 665 ARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=143.02 Aligned_cols=256 Identities=17% Similarity=0.136 Sum_probs=112.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007878 184 LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL-SACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
...+.+.|++++|++++++-.....+|+...|..++ ..+-..++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 455566677777777765443332234444444433 3444567778888888777776544 56667777776 68889
Q ss_pred HHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007878 263 IQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 263 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
+++|.+++...-+ ++...+..++..+.+.|+++++.+++++.... ....++...|..+...+.+.|+.++|+..++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999888877643 66677888888899999999999999997752 33456777888888999999999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 341 MTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 341 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
..+. .|+ ......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9864 665 778889999999999999988888776 1234556788999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.....++.++...|+.++|.+++++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-11 Score=126.46 Aligned_cols=318 Identities=12% Similarity=0.069 Sum_probs=223.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 007878 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDG---IIDKNDVSWCSMLVVYVQNYEEENGCQMF 200 (586)
Q Consensus 124 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (586)
.|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+-. +...|...|-.+..-..+.|.+++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377888888887777775 45666777777888888887777766532 34456677777777777778888888777
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHHHHHHHHhhCCC-
Q 007878 201 LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSA----LVDMYGKCGSIQDAEIAFNKMPE- 275 (586)
Q Consensus 201 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~- 275 (586)
.+..+.. +++...+---...|-+.|+...|..-+.++....++.|..-... .+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7777653 34444444455666777777777777777777665434333322 34455566666777777766543
Q ss_pred ----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh-------------------------ccCCCCCCHHHHHHHHHHhh
Q 007878 276 ----RNLVCWNAIIGGYAHQGHADMALSSFEEMTS-------------------------MRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 276 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------~~~g~~pd~~t~~~ll~a~~ 326 (586)
-+...++.++..|.+...++.|......+.. .+.++.++... .-+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 3445677777777777778888777766654 11122233222 12222344
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHH
Q 007878 327 RAGAVEKGMKIFYSMTLKYGIKP--GAEHYACVVDLLGRAGLVDRAYEIIKEMPM---RPTISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~ll~~~~~~~~~~~ 401 (586)
+....+....+......+ .+.| +...|.-+.++|...|++.+|+++|..+.- .-+...|--+..+|...|.+++
T Consensus 389 ~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 444444444444444333 5333 477899999999999999999999999822 2357799999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|++.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999874
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-11 Score=111.30 Aligned_cols=349 Identities=13% Similarity=0.043 Sum_probs=181.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC----CCCcccHHHHHH
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP----ERNLATWNAYIS 84 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~ 84 (586)
+..||+.+|.++++....+.|++++.+........+..++|.+|.+-+-.-+ .+++.+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4456666666666666666666666665555445566666666554322111 33444443 366666666666
Q ss_pred HHHcCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH-HHHHHHHHHH----hCCCC----ChhHHHH
Q 007878 85 NAVLGGRPKN----AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQL-GRQLHGFLVR----SGFDG----NVSVCNG 151 (586)
Q Consensus 85 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~ 151 (586)
+.++.|+++. |++++.+|++-|+.|...+|..+|..+.+.++..+ +..+...+.. ..+.| |...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665543 34455666666666666666666666655555433 2222222221 11221 2334455
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007878 152 LVDFYGKCNEVGLAKVVFDGIID--------K---NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLS 220 (586)
Q Consensus 152 ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 220 (586)
.++.+.+..+.+-|.++-.-... + ...-|..+....++....+.-+..|..|.-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 55555566666655555432211 1 112234455555566666666666666655555566666666666
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhc--CCHHHHH
Q 007878 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ--GHADMAL 298 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~--g~~~~A~ 298 (586)
+....+.++-..+++..++..|...+.....-+...+++.. ..|+...-..+-...++. .-.+...
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665553322222222221111111 012222111121111110 1111112
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH---HHHHhcCChHHHHHHHH
Q 007878 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV---DLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 299 ~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li---~~~~~~g~~~~A~~~~~ 375 (586)
..-.+|.+ .. ......+.++..+.+.|..++|.++|..+.++..--|.....++|+ +.-.+......|...++
T Consensus 510 ~~~~R~r~--~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 510 SQPIRQRA--QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQ 585 (625)
T ss_pred hhHHHHHh--cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 22334444 33 3455666677778899999999999999876655556555666444 44455667777777776
Q ss_pred hC
Q 007878 376 EM 377 (586)
Q Consensus 376 ~m 377 (586)
-|
T Consensus 586 ~a 587 (625)
T KOG4422|consen 586 LA 587 (625)
T ss_pred HH
Confidence 65
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-10 Score=110.15 Aligned_cols=425 Identities=13% Similarity=0.107 Sum_probs=326.2
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhH
Q 007878 18 KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 94 (586)
++.......+.|+-++.+.++. ++.+...| -+|++...++.|.++++...+ .+...|.+-...=-.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 3344455666677777777664 23344444 445566678889888887654 477788777666677899888
Q ss_pred HHHHHHH----HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHH
Q 007878 95 AIDAFIN----LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN--VSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 95 A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
..++..+ +...|+..|...|-.=..+|-..|..-....+....+..|++.. ..+|+.-...+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 8887654 56688899999998888899999999999999988888886543 46888888999999999999999
Q ss_pred HhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007878 169 FDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 169 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
|....+ .+...|...+..=-..|..++-..+|++.... ++-....+.......-..|+...|+.++.++.+..+.
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 987644 35667877777767778889999999998875 2334445555556666779999999999999988776
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll 322 (586)
+..++-+-+..-....+++.|+.+|.+... ++...|.--+...--.++.++|++++++..+ .-|+ ...|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk----~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK----SFPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH----hCCchHHHHHHHh
Confidence 788888889999999999999999998764 7777887777766678899999999999887 3466 46777788
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMR--PTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~ 400 (586)
..+-+.++++.|...|..-.+ .++-.+..|-.|.+.=-+.|.+-.|..++++..++ -+...|-..+..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 888889999999988876643 33444678888888888899999999999988433 46788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------------------------CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007878 401 LGRIAADNLFKLDPN------------------------------DSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
.|..+..++++-.|. |+.+...++.++....+++.|++.|.+..+.+ |
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--P 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--C
Confidence 998888887764443 45556667777888888888888888887644 5
Q ss_pred CCceeee
Q 007878 451 GAGCSWI 457 (586)
Q Consensus 451 ~~~~~~~ 457 (586)
+.|-.|.
T Consensus 849 d~GD~wa 855 (913)
T KOG0495|consen 849 DNGDAWA 855 (913)
T ss_pred ccchHHH
Confidence 5555553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-11 Score=123.53 Aligned_cols=285 Identities=11% Similarity=0.001 Sum_probs=166.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH--HHHHHHHHhcCChHHHH
Q 007878 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVC--NGLVDFYGKCNEVGLAK 166 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~g~~~~A~ 166 (586)
.|+++.|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+.++.+. .|+...+ ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 477777776665544321111 112222233335667777777777776654 3443222 23355666667777776
Q ss_pred HHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCC
Q 007878 167 VVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACV 243 (586)
Q Consensus 167 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (586)
..+++..+ .++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 66666533 23445556666666667777777666666665433211 111000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007878 244 EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
...|..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++++..+ . .||... .
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~--~~~~~l--~ 299 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--R--QYDERL--V 299 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c--CCCHHH--H
Confidence 01122223223333445555566666543 4556666777777777777777777777765 2 244421 1
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCH
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~ 399 (586)
++.+....++.+++.+..+...++ .+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 233334557777777777777654 2233556677777788888888888888776 6667777777777778888888
Q ss_pred HHHHHHHHHHhcc
Q 007878 400 ELGRIAADNLFKL 412 (586)
Q Consensus 400 ~~a~~~~~~~~~~ 412 (586)
++|...+++.+.+
T Consensus 378 ~~A~~~~~~~l~~ 390 (398)
T PRK10747 378 EEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888777664
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-11 Score=125.09 Aligned_cols=422 Identities=10% Similarity=-0.000 Sum_probs=235.0
Q ss_pred CccCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHH
Q 007878 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWN 80 (586)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (586)
|+..|+.||.+||.++|..|+..|+.+.|- +|..|.-...+.+..+++.++....+.++.+.+. +|...+|+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYT 87 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHH
Confidence 345799999999999999999999999988 9999988888888899999999999999887765 77888999
Q ss_pred HHHHHHHcCCChhHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhcCC-ChH------HHHHHHHHHHHhCC-CC
Q 007878 81 AYISNAVLGGRPKNAIDAFIN-LR-------RTGGEPDLITFCAFLNACSDCS-LLQ------LGRQLHGFLVRSGF-DG 144 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~~~------~a~~~~~~~~~~g~-~~ 144 (586)
.|..+|.+.|+... ++..++ |. ..|+.--..-|-..+++|-..- +.. --+.++...++.+. .|
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999765 333333 21 1222111111111111111100 000 00111111222110 01
Q ss_pred ChhHHHH-H--HHHH-HhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007878 145 NVSVCNG-L--VDFY-GKCNEVGLAKVVFDGIID-KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL 219 (586)
Q Consensus 145 ~~~~~~~-l--l~~~-~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 219 (586)
...-++. . ++-. .-...+++-...-....+ ++..++.+.+..-..+|+.+.|..++.+|++.|++.+.+-|..++
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 0000000 0 1000 001112222222222222 555666666666666666666666666666666666665555555
Q ss_pred HHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---------------------------------------
Q 007878 220 SACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC--------------------------------------- 260 (586)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------------------------------- 260 (586)
-+ .++......+..-|...|+.|+..|+.-.+-...+.
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 33 555555555566666666666655554433333322
Q ss_pred -------------------------------CCHHHHHHHHhhCCC-------CCeeHHHHHHHHHHhcCCHHHHHHHHH
Q 007878 261 -------------------------------GSIQDAEIAFNKMPE-------RNLVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 261 -------------------------------g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
|+-++.+++-..+.. .++..|..++. ++|+
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------------qyFr 391 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------------QYFR 391 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------------HHHH
Confidence 222222222222211 11222222222 2222
Q ss_pred Hhhhc--------c-------------------CCCCCCHH----------------------------HHHHHHHHhhc
Q 007878 303 EMTSM--------R-------------------CEAVPNYV----------------------------TLVCVLSACSR 327 (586)
Q Consensus 303 ~m~~~--------~-------------------~g~~pd~~----------------------------t~~~ll~a~~~ 327 (586)
+.... + ....||.. .-+.++..|..
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 22210 0 00112211 11222233333
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHH
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP-----MRPTISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~~~~~~a 402 (586)
.-+..+++..-+.. +..-+ ...|..||+.+....+.+.|..+.++.. ..-|..-+..+...+.+.+....+
T Consensus 472 e~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 33333333322222 11111 2578899999999999999999999882 224566778888889999999999
Q ss_pred HHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007878 403 RIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 403 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
..+++++.+.- |.-.....-+.+..+..|+.+...++++-+...|+.-
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99988888743 3334555667777788999999999999999988866
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-10 Score=117.18 Aligned_cols=349 Identities=12% Similarity=0.132 Sum_probs=263.5
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccC---CCCCcccHHHHHHHHHcCCChhHH
Q 007878 19 ASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEM---PERNLATWNAYISNAVLGGRPKNA 95 (586)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 95 (586)
.+...|++++|.+++.++++.. +.....|-.|...|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3445599999999999999986 677889999999999999999998776433 335778899999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChHHHHHHHhc
Q 007878 96 IDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS----VCNGLVDFYGKCNEVGLAKVVFDG 171 (586)
Q Consensus 96 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~ 171 (586)
.-.|.+..+..+ ++...+--=...|-+.|+...|...+.++.....+.|.. .--..+..|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988642 244444445566888999999999999998885322322 223345667777888999998887
Q ss_pred CCC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----------------------HHH----HHHH
Q 007878 172 IID--K---NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF----------------------MIS----SVLS 220 (586)
Q Consensus 172 ~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~~----~ll~ 220 (586)
... . +...++.++..|.+...++.|......+......+|.. .|. -+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 654 2 44578899999999999999999988887622222221 111 1223
Q ss_pred HHhcccCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCH
Q 007878 221 ACARIAGLELGRSVHAVAVKAC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHA 294 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~ 294 (586)
++.+....+....+........ +..++..|.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4455666666777777777766 555677889999999999999999999999875 4677999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhH-------HhcCCCCChHHHHHHHHHHHhcCC
Q 007878 295 DMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMT-------LKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
++|.+.|+.... ..|+ ...-.+|-+.+.+.|+.++|.+.+..+. +..+..|+.....-..+.|.+.|+
T Consensus 466 e~A~e~y~kvl~----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 466 EEAIEFYEKVLI----LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHh----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999999988 3455 4455567777889999999999998853 111344555555666677888888
Q ss_pred hHHHHHH
Q 007878 367 VDRAYEI 373 (586)
Q Consensus 367 ~~~A~~~ 373 (586)
.++=++.
T Consensus 542 ~E~fi~t 548 (895)
T KOG2076|consen 542 REEFINT 548 (895)
T ss_pred HHHHHHH
Confidence 7764433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-09 Score=106.18 Aligned_cols=430 Identities=15% Similarity=0.065 Sum_probs=259.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--------CCcc----------
Q 007878 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--------RNLA---------- 77 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~---------- 77 (586)
|.-++++...++.|+.++....+. ++.+..+|.+-...=-..|..+...+++++-.. -+..
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 556677778888888888887653 577777887776666777777777777654210 1111
Q ss_pred ---------------------------cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHH
Q 007878 78 ---------------------------TWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCSLLQL 129 (586)
Q Consensus 78 ---------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 129 (586)
+|+.--..|.+.+.++-|..+|...++. -| +...|......=-..|..+.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence 3333333444444445555555544442 22 22233333333333455555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 007878 130 GRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206 (586)
Q Consensus 130 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (586)
...+++.++..- +.....|-....-+...|++..|+.++++..+ .+...|-+-+..-..+.++++|..+|.+....
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 555555555542 22334444445555556666666665555422 23445555556666666666666666655542
Q ss_pred CCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHH
Q 007878 207 GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNA 283 (586)
Q Consensus 207 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~ 283 (586)
.|+...|.--+..---.++.++|.+++++.++.-+. -...|-.+...+-+.++++.|++.|..-.+ | .+..|-.
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 344444433333333455666666666665554322 344555566666666666666666655443 3 2345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007878 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 363 (586)
+...--+.|..-.|..++++... .+ +-|...|...+..-.+.|..++|..+.....++ .+.+-..|..-|.+..+
T Consensus 725 LakleEk~~~~~rAR~ildrarl--kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARL--KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHh--cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccC
Confidence 55555556666666666666655 22 124556666666666666666666666666543 34445556666666666
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 364 AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 364 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
.++-..+.+.+++.. .|..+.-++...+....+++.|...|.++.+.+|++..+|..+...+...|.-++-.+++.+.
T Consensus 800 ~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred cccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666555555555543 355566666777888889999999999999999999999999999999999999999999888
Q ss_pred HhCCCccCCceeeeeeCC
Q 007878 444 KDVGIKKGAGCSWISVKN 461 (586)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~ 461 (586)
... .|.-|..|..+..
T Consensus 878 ~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 878 ETA--EPTHGELWQAVSK 893 (913)
T ss_pred hcc--CCCCCcHHHHHhh
Confidence 763 4667778876543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-11 Score=112.09 Aligned_cols=214 Identities=16% Similarity=0.083 Sum_probs=176.7
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHH
Q 007878 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSS 300 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 300 (586)
-.|+.-.+.+-++..++..+.++. .|--+..+|....+-++..+.|+...+ .|..+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888899999999988766443 365667789999999999999998764 5667888878888888999999999
Q ss_pred HHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007878 301 FEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P 378 (586)
Q Consensus 301 ~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 378 (586)
|++.+. +.|+ ...|..+..+..+.+.++++...|++.+++ ++--++.|+.....+...+++++|.+.|+.. .
T Consensus 417 F~Kai~----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAIS----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999987 4464 678888888889999999999999999875 4555889999999999999999999999986 4
Q ss_pred CCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 379 MRPT---------ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 379 ~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.|+ +.+-.+++-.-. .+++..|..+++++.+++|....+|..|+.+-.+.|+.++|.++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4443 223333333333 38999999999999999999999999999999999999999999998653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-11 Score=120.34 Aligned_cols=275 Identities=9% Similarity=0.031 Sum_probs=202.8
Q ss_pred cCChHHHHHHHhcCCCC--Chhh-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH--HHHHHHhcccCcHHHHH
Q 007878 159 CNEVGLAKVVFDGIIDK--NDVS-WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS--SVLSACARIAGLELGRS 233 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 233 (586)
.|+++.|++.+....+. ++.. |-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765442 2222 322234447888888888888888763 45554333 23456677888899999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe-----------eHHHHHHHHHHhcCCHHHHHHHHH
Q 007878 234 VHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNL-----------VCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
.++.+.+..+. +..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888887755 677888888999999999999988888875221 133344444444555667777777
Q ss_pred HhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 007878 303 EMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP 381 (586)
Q Consensus 303 ~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 381 (586)
...+ ..+.+......+..++...|+.++|..++....+. .|+.... ++.+....++.+++++.+++. ...|
T Consensus 254 ~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7754 13446778889999999999999999999988753 5555322 233334569999999999888 4455
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 382 T-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+ ...+.++...|...+++++|...|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 4567788888999999999999999999999985 5678999999999999999999997654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-10 Score=117.17 Aligned_cols=223 Identities=12% Similarity=-0.002 Sum_probs=114.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHH-------HHHHH
Q 007878 184 LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS-------ALVDM 256 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~ 256 (586)
...+...|++++|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+...... .+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444445555555554444432 1122334444444445555555555555554443322111111 11111
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHH---HHHHHHhhccCC
Q 007878 257 YGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTL---VCVLSACSRAGA 330 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~---~~ll~a~~~~g~ 330 (586)
-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+ . .||.... ..........++
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~--~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--K--LGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--h--CCCcccchhHHHHHhhhcCCCC
Confidence 1111223344444544443 3666777777777778888888888877776 2 2444321 111112233456
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007878 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE--M-PMRPTISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.++++
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666654322222113445666667777777777777773 2 445666666666666777777777776666
Q ss_pred HHhc
Q 007878 408 NLFK 411 (586)
Q Consensus 408 ~~~~ 411 (586)
+.+.
T Consensus 395 ~~l~ 398 (409)
T TIGR00540 395 DSLG 398 (409)
T ss_pred HHHH
Confidence 6544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.6e-10 Score=104.58 Aligned_cols=314 Identities=10% Similarity=0.045 Sum_probs=225.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhH-HHHHHHHHHcCChHHHHHH
Q 007878 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW-CSMLVVYVQNYEEENGCQM 199 (586)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~ 199 (586)
+.+.|..+.|...+...+.. -+..|.+.+...--..+.+.+..+-...+..+...- --+..++....+.+++++-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666555433 122333333333334444444444333332211111 1234556666677888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHH-HHHHHhhCCCC
Q 007878 200 FLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE--GNIFVGSALVDMYGKCGSIQD-AEIAFNKMPER 276 (586)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 276 (586)
.......|++-+...-+-...+.....++++|..+|+++.+..+- .|..+|+.++-.--.+.++.- |..++ .+.+-
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKy 328 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKY 328 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccC
Confidence 888888776655554455555566778999999999999987532 266777766544333333332 33333 23334
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007878 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
-+.|...+.+-|.-.++.++|...|++..+ +.|. ...|+.+..-|....+...|++-++.+++ -.+.|-..|-
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALk----LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWY 402 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALK----LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWY 402 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHh----cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHh
Confidence 456666777778889999999999999988 3355 56788888899999999999999999974 2244678999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|.++...+..+...+..|+.+|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999999998 6666 7789999999999999999999999999999887889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007878 434 EEADLVRKEMKD 445 (586)
Q Consensus 434 ~~a~~~~~~m~~ 445 (586)
++|...+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=130.23 Aligned_cols=254 Identities=12% Similarity=0.083 Sum_probs=93.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007878 83 ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAF-LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
-..+.+.|++++|++++++-......|+...|-.+ ...+...++.+.|.+.++.+.+.+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 34455666666666666544333223444443333 333444566777777777766654 2244555556655 56677
Q ss_pred hHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcccCcHHHHHHHHHH
Q 007878 162 VGLAKVVFDGII--DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VEPKDFMISSVLSACARIAGLELGRSVHAVA 238 (586)
Q Consensus 162 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 238 (586)
+++|.+++...- .++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777666542 2455566677777777788888887777766432 3345566666777777788888888888888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007878 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
++..+. |..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++..+ .. +.|.
T Consensus 173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~-p~d~ 248 (280)
T PF13429_consen 173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LN-PDDP 248 (280)
T ss_dssp HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HS-TT-H
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cc-cccc
Confidence 777655 56677777888888888877666666554 25667777788888888888888888888776 22 2256
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
.....+..++...|+.++|..+...+.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 677777778888888888887776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=122.16 Aligned_cols=275 Identities=15% Similarity=0.070 Sum_probs=212.2
Q ss_pred ChHHHHHHHhcCCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007878 161 EVGLAKVVFDGIID--KND-VSWCSMLVVYVQNYEEENGCQMFLTARREG--VEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 161 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
+..+|...|..++. +|. .....+..+|...+++++|.++|+...+.. ..-+...|.++|..+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45678888887643 233 334557788999999999999999987642 11255678877765532 1222223
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 007878 236 -AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER---NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEA 311 (586)
Q Consensus 236 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~ 311 (586)
+.+++.. +-.+.+|-++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~ 484 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----V 484 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----C
Confidence 2333333 236789999999999999999999999998763 557888887788888999999999998876 3
Q ss_pred CCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007878 312 VPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 312 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
.|. ...|-.+...|.+.++++.|.-.|+.+. .+.|. .+....+...+.+.|+.++|+++++++ .+.| |+..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 343 3456678889999999999999999986 56775 556667778899999999999999998 4443 444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
--...+...+++++|++.++++.++-|++...|.+++.+|.+.|+.+.|..-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455667778999999999999999999999999999999999999999999888876643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-10 Score=109.72 Aligned_cols=249 Identities=11% Similarity=0.084 Sum_probs=176.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007878 186 VYVQNYEEENGCQMFLTARREGV--EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
+.-...++++|+.+|+++.++.. --|..+|+.++-.-.....+.---+....+- +--+.|...+.+-|+-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhH
Confidence 34455677777777777776531 1255677766654332222211111111111 12344666777888888888
Q ss_pred HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007878 264 QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 264 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
++|...|++..+ ....+|+.|..-|....+...|++.+++..+ .. +-|...|-.|..+|.-.+...-|+-+|++
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC-chhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 999999988765 3456788888889999999999999998887 22 23678888899999999999999999988
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc------
Q 007878 341 MTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFK------ 411 (586)
Q Consensus 341 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------ 411 (586)
.. .++| |...|.+|.+.|.+.+++++|++-|.+. .-..+...+..|...+-+.++.++|.+.+++-++
T Consensus 424 A~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg 500 (559)
T KOG1155|consen 424 AL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG 500 (559)
T ss_pred HH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 86 3455 5788899999999999999999998887 2223557888888999999999999988888777
Q ss_pred -cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 412 -LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 412 -~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+|....+...|+.-+.+.+++++|..+.....
T Consensus 501 ~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 501 EIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 234344455567888888999999887765544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-10 Score=118.26 Aligned_cols=292 Identities=11% Similarity=-0.029 Sum_probs=210.4
Q ss_pred HHHHHHHHH--cCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007878 79 WNAYISNAV--LGGRPKNAIDAFINLRRTGGEPDLI-TFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDF 155 (586)
Q Consensus 79 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 155 (586)
...+..+.. ..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+..+.+....+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344555543 579999999999887664 45433 3344456677889999999999998776422223344556888
Q ss_pred HHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH---hcccCcH
Q 007878 156 YGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC---ARIAGLE 229 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~ 229 (586)
+...|+++.|...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+. ...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998854 356678889999999999999999999999987543332211111221 2222333
Q ss_pred HHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeH---HHHHHHHHHhcCCHHHHHHHH
Q 007878 230 LGRSVHAVAVKACVE---GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVC---WNAIIGGYAHQGHADMALSSF 301 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~~~ 301 (586)
.+.+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+ ||... +..........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 334455555554432 3788889999999999999999999999875 54432 122222334457888999999
Q ss_pred HHhhhccCCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 302 EEMTSMRCEAVPNY---VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 302 ~~m~~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
++..+ ..|+. ....++...|.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk----~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAK----NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHH----hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88877 23554 4556888999999999999999995322 256899999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-11 Score=121.17 Aligned_cols=244 Identities=12% Similarity=0.118 Sum_probs=192.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH-HH
Q 007878 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACV--EGNIFVGSALVDMYGKCGSIQD-AE 267 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~ 267 (586)
-+..+|+..|...... +.-.......+..+|...+++++++.+|+.+.+..+ ..+..+|++.+--+-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568899999885443 333445666778899999999999999999987542 2267788877655443322222 22
Q ss_pred HHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC
Q 007878 268 IAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG 346 (586)
Q Consensus 268 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 346 (586)
.+.+. ....+.+|.++..+|..+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+
T Consensus 412 ~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 412 DLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 23332 235678999999999999999999999999988 456 57889888888888999999999998775
Q ss_pred CCCChHHHHH---HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH
Q 007878 347 IKPGAEHYAC---VVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 347 ~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 421 (586)
..|..+|++ |.-.|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.|+|+++++++..++|.|+-.-+
T Consensus 483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 345556654 556789999999999999998 6666 4556666777789999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHh
Q 007878 422 LLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
--+.++...+++++|...++++++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999999987
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-09 Score=105.04 Aligned_cols=419 Identities=10% Similarity=-0.034 Sum_probs=290.2
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhcc--CCCCCcccHHHHHHHHHcCC
Q 007878 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDE--MPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g 90 (586)
+..+++-+....++..|.-+-+.+...+ .|+..---+..+|.-.|+++.|..+... +.+.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555566666766666665544 3444444466777777888888877653 45678888888888888899
Q ss_pred ChhHHHHHHH----HHHH------C-C--CCCChhh----HHHHHH-------HHhcCCChHHHHHHHHHHHHhCCCCCh
Q 007878 91 RPKNAIDAFI----NLRR------T-G--GEPDLIT----FCAFLN-------ACSDCSLLQLGRQLHGFLVRSGFDGNV 146 (586)
Q Consensus 91 ~~~~A~~~~~----~m~~------~-g--~~p~~~t----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~g~~~~~ 146 (586)
++++|+.++. .+.. . + +.+|..- -+.-.+ .+....+.++|+..+.+++... .
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D----~ 172 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD----A 172 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc----h
Confidence 9999998887 2211 0 0 1122111 111111 2344455677777777665442 2
Q ss_pred hHHHHHH---HHHHh-----------------c-CChHHHHHHHhc----CC----------------CCChhhHHHHHH
Q 007878 147 SVCNGLV---DFYGK-----------------C-NEVGLAKVVFDG----II----------------DKNDVSWCSMLV 185 (586)
Q Consensus 147 ~~~~~ll---~~~~~-----------------~-g~~~~A~~~~~~----~~----------------~~~~~~~~~li~ 185 (586)
..+.++. ....- + .+.+.-+.+|+- +. +.++.....-..
T Consensus 173 ~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad 252 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD 252 (611)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence 2222221 11110 0 011111222221 10 013333344455
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007878 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (586)
-+...+++.+..+++....+.. ++....+..-|.++...|+..+-..+-..+++.-+. ...+|-++.-.|.-.|+.++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHH
Confidence 6778899999999999988753 556666666677888889888877777888887655 67788888888888999999
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|++.|.+... .-...|-....+|+-.|..|+|+..+...-+.=.| ....+.-+.--|.+.++.+.|.++|.+..
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999998664 33468999999999999999999998877652112 22233344456888999999999999886
Q ss_pred HhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CC------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007878 343 LKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PM------RP-TISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 343 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
++-|+ +...+-+.-.....+.+.+|..+|+.. ++ ++ -..+++.|..+|++.+.+++|+..+++.+.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 56664 667777777777888999999999876 11 11 2456888999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 413 DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.|.+..+|..++-+|...|+++.|.+.|.+...
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999998754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=103.67 Aligned_cols=392 Identities=12% Similarity=0.053 Sum_probs=258.3
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCC----CCcccHH-HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHH---
Q 007878 48 GCSAFDMYSKTGLKDDADKMFDEMPE----RNLATWN-AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN--- 119 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--- 119 (586)
...|..-|.-.....+|+..++-+.. ||..... .+-..+.+...+.+|++.|+-.+..-+..+..+-.-+++
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 34455566666777888888876654 3332211 133457788899999999987766533334444433443
Q ss_pred -HHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----------------CChhhHHH
Q 007878 120 -ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID----------------KNDVSWCS 182 (586)
Q Consensus 120 -~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~ 182 (586)
.+.+.|+++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|..|.. |+....|.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 467889999999999999887 68887777777788888999999999988732 12222222
Q ss_pred HH-----HHHHHc--CChHHHHHHHHHHHHCCCCCCHhH-HHH--------------------HHHHHhcccCcHHHHHH
Q 007878 183 ML-----VVYVQN--YEEENGCQMFLTARREGVEPKDFM-ISS--------------------VLSACARIAGLELGRSV 234 (586)
Q Consensus 183 li-----~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t-~~~--------------------ll~~~~~~~~~~~a~~~ 234 (586)
-| .-.-+. .+.++++-.--++...-+.||... +.. -..-+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 22 111111 112233322223333223343210 000 11234567889999988
Q ss_pred HHHHHHhCCCCchhHHHHHHHH------------------------------------HHhcCCHHHHHHHHhhCCCCCe
Q 007878 235 HAVAVKACVEGNIFVGSALVDM------------------------------------YGKCGSIQDAEIAFNKMPERNL 278 (586)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~------------------------------------~~~~g~~~~A~~~~~~m~~~~~ 278 (586)
+.-..+..-+.-...-|.|-.. -...|++++|.+.+.+....|.
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 8777654322111111111110 0124778888888888776665
Q ss_pred eHHHHHHH---HHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007878 279 VCWNAIIG---GYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 279 ~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
..-.+|.. .+-..|+.++|++.|-++.. . +.-+...+..+.+.|-...+..+|++++.+... -++.|+.+.+
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~--i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ils 596 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHA--I-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILS 596 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--H-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHH
Confidence 54444332 35678999999999988754 1 234567777888889999999999999988752 4555688999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
-|.+.|-+.|+-.+|.+..-+- .. .-+..+..-|..-|....-.+.++..|+++.-+.|+...-...++..+.+.|++
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999998876554 32 336667666777778888889999999999999998655555666777889999
Q ss_pred HHHHHHHHHHHhC
Q 007878 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
..|.++++....+
T Consensus 677 qka~d~yk~~hrk 689 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-09 Score=98.92 Aligned_cols=370 Identities=12% Similarity=0.106 Sum_probs=213.2
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC--CCCcccHHHHHHHHHcCC
Q 007878 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP--ERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g 90 (586)
|...+..-.+......|+.++++.+..-...| ..|-..+.+=-..|++..|.++|+.-. +|+..+|++.|.-=.+..
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Confidence 33344445566677788888888776532222 344445555556788888888887643 488889999998888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHhcCChHHHHHH
Q 007878 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRS-GF-DGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.++.|..+|++..- +.|+..+|.--.+-=-+.|....+.++++.+++. |- ..+...+++....=.++..++.|.-+
T Consensus 189 eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 189 EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999988876 4588888887777777888888888888887764 21 11233455555555566666766666
Q ss_pred Hhc----CCCC-------------------------------------------ChhhHHHHHHHHHHcCChHHHHHHHH
Q 007878 169 FDG----IIDK-------------------------------------------NDVSWCSMLVVYVQNYEEENGCQMFL 201 (586)
Q Consensus 169 ~~~----~~~~-------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (586)
|.- ++.. |-.+|--.+..--..|+.+...++|+
T Consensus 267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 542 2211 22233334444444556666666665
Q ss_pred HHHHCCCCCCH-------hHHHHHHHHH---hcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHH
Q 007878 202 TARREGVEPKD-------FMISSVLSAC---ARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG----KCGSIQDAE 267 (586)
Q Consensus 202 ~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~ 267 (586)
+.... ++|-. ..|..+=-+| ....+.+.++++++..++. ++...+++.-+=-+|+ ++.++..|+
T Consensus 347 rAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 347 RAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred HHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 55543 33311 1222222222 1234555566666555552 2223344443333332 345566666
Q ss_pred HHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007878 268 IAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 268 ~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
+++..... |-.-++..-|..-.+.+++|.+..++++.++ .+ | |..++......=...|+.+.|..+|.-++..
T Consensus 425 kiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 425 KILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FS--PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 66655442 5555555555555566666666666666665 22 3 3455555555555566666666666666544
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007878 345 YGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLN 391 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 391 (586)
..+......|.+.|+-=...|.++.|..+++++ ...+...+|-++..
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 333333445555555555666666666666665 22334445554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-08 Score=97.85 Aligned_cols=382 Identities=12% Similarity=0.083 Sum_probs=278.2
Q ss_pred hcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 007878 57 KTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQL 133 (586)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 133 (586)
..+++..|.++|+.... +++..|---+..=.++..+..|..++++....=+..|..-|.. +..=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHHHHH
Confidence 35667789999998765 6677777778888889999999999999877534444433322 2233456899999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 007878 134 HGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI--IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK 211 (586)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 211 (586)
|+.-.+. .|+...|++.|+.=.+-..++.|..++++. ..|++.+|--...-=.+.|....|..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 9987765 899999999999999999999999999986 5688999988888888899999999999887653 223
Q ss_pred HhHHHHHHHHH----hcccCcHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHH--------hhCCC---
Q 007878 212 DFMISSVLSAC----ARIAGLELGRSVHAVAVKACVEGN-IFVGSALVDMYGKCGSIQDAEIAF--------NKMPE--- 275 (586)
Q Consensus 212 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~--- 275 (586)
...-..+..++ .+....+.|.-++...+..=++.. ...|..+...=-+-|+-.....+. +.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 33333333333 456678889999988887654432 345555555545566654443332 22222
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-------HHHHHHHHHh---hccCCHHHHHHHHHHhHHhc
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-------VTLVCVLSAC---SRAGAVEKGMKIFYSMTLKY 345 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~ 345 (586)
-|-.+|--.+..-...|+.+...++|++.+. +++|-. ..|.-+=-+| ....+++.+.++|+...+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa---nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA---NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc---cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 3556777777777778999999999999986 466632 1222222222 356788899999988864
Q ss_pred CCCCChHHHHHHHHHH----HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 346 GIKPGAEHYACVVDLL----GRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 346 ~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
-++....++.-+=-+| .++.++..|.+++... +.-|-..++...|..-.+.++++....++++.++.+|.+..++
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 3343455555444343 4678888999988876 7778888888888888888899999999999999999988888
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 421 VLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
.-.+..-...|+++.|..+|+...+...
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 8888888888999999999988877654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-10 Score=101.24 Aligned_cols=264 Identities=14% Similarity=0.192 Sum_probs=144.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCChHHH
Q 007878 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG-FDGN--VSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A 165 (586)
+.++++|.++|-+|.+... -+..+--+|-+.+.+.|..+.|..+|..+.++. ++.+ ....-.|..-|.+.|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4678889999988877321 133345567777888888999999888877652 1111 22344566677788888888
Q ss_pred HHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcccCcHHHHHHHHHH
Q 007878 166 KVVFDGIIDKND---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF----MISSVLSACARIAGLELGRSVHAVA 238 (586)
Q Consensus 166 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~ 238 (586)
+.+|..+.+... .....|+..|-+..+|++|++.-+++.+.+-++..+ .|--+........+.+.|...+...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888877766333 344556777888888888888777777655433322 1122222222333444444444444
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HH
Q 007878 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YV 316 (586)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~ 316 (586)
.+.+++ .+..--.+.+. +...|++..|++.++...+ .+ |+ ..
T Consensus 207 lqa~~~-cvRAsi~lG~v-------------------------------~~~~g~y~~AV~~~e~v~e--Qn--~~yl~e 250 (389)
T COG2956 207 LQADKK-CVRASIILGRV-------------------------------ELAKGDYQKAVEALERVLE--QN--PEYLSE 250 (389)
T ss_pred HhhCcc-ceehhhhhhHH-------------------------------HHhccchHHHHHHHHHHHH--hC--hHHHHH
Confidence 443332 22222233333 4455555555555555555 22 32 23
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH-hCCCCCCHHHHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIK-EMPMRPTISVWGALLNA 392 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~~ 392 (586)
+...|..+|.+.|+.+++..++..+.+. .++...-..+.+.-....-.+.|...+. .+.-+|+...+..|+..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 4445555555556655555555555432 2333333333333333333344433332 33455666666666555
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=88.10 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 007878 74 RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD 123 (586)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 123 (586)
||+++||++|++|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=106.94 Aligned_cols=197 Identities=16% Similarity=0.071 Sum_probs=162.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+ .. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC-CCCHHHHHHHH
Confidence 456677788899999999999999987653 3456778888889999999999999999987 32 23456777888
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
..+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998754222233566777888999999999999999987 3334 4567888888899999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+|...++++.+..|+++..+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999888888888899999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=121.46 Aligned_cols=272 Identities=15% Similarity=0.121 Sum_probs=197.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007878 198 QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN 277 (586)
Q Consensus 198 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 277 (586)
.++-.|...|+.|+.+||.++|.-|+..|+.+.|- +|..|.-.....+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667888999999999999999999999999999 9999988888888999999999999999887775 788
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
..+|+.+..+|..+|+... ++..++- ...+...++..|.-..-..++..+.-..+.-||.. ..
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqd-------------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ 145 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQD-------------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NA 145 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHH-------------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HH
Confidence 8999999999999999865 3333331 11244455666666666666665533334555544 35
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 007878 358 VDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGK-PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 436 (586)
+..+.-.|.++.+++++..+|...-......++.-+..... +++-....+...+ . .++.+|..+...-..+|+.+.|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhH
Confidence 56667788899999999998654211111223555544443 3333333444444 3 4578888888888899999999
Q ss_pred HHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhh
Q 007878 437 DLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEK 511 (586)
Q Consensus 437 ~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~ 511 (586)
..++..|+++|++.++...|..+-+ .+....++.+++-|++.|+.||..|....+.++..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 9999999999999998888866532 11122356788999999999999987665555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-08 Score=95.34 Aligned_cols=295 Identities=14% Similarity=0.093 Sum_probs=193.5
Q ss_pred HHHHHHHc--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007878 81 AYISNAVL--GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK 158 (586)
Q Consensus 81 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 158 (586)
.+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-..+.++.+..-.++..++-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34445443 588888888888876665443 334555666677778888888888887776445666677777777777
Q ss_pred cCChHHHHHHHhcC---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007878 159 CNEVGLAKVVFDGI---IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 159 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
.|+++.|..-.++. ..+++........+|.+.|++.+...++.+|.+.|+--|+..- ++
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l- 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL- 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-
Confidence 88887777666554 3456667777778888888888888888888777754432210 00
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007878 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+ .+..
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk--~~~D 295 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK--RQWD 295 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hccC
Confidence 122344444444444444444455665552 4455566667777778888888888777777 4544
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007878 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLN 391 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 391 (586)
|+ ...+-.+.+.++.+.-++..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..
T Consensus 296 ~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~ 369 (400)
T COG3071 296 PR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELAD 369 (400)
T ss_pred hh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 44 2222345566777666666666655544444 56777777788888888888887765 66777788888888
Q ss_pred HHHHcCCHHHHHHHHHHHhcc
Q 007878 392 ACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~ 412 (586)
++.+.|++++|.+..++.+.+
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 888888888777777776643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-08 Score=92.32 Aligned_cols=365 Identities=13% Similarity=0.024 Sum_probs=245.3
Q ss_pred hhHHHHHHHHhcCCchHHHHHhccCCCC-CcccHHHHHHHHHcCC-ChhHH--------------HHHHHHHHHCC----
Q 007878 47 VGCSAFDMYSKTGLKDDADKMFDEMPER-NLATWNAYISNAVLGG-RPKNA--------------IDAFINLRRTG---- 106 (586)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A--------------~~~~~~m~~~g---- 106 (586)
.-...+..|...++-+.|...+.+.+.. ...--|.|+.-+-+.| +-.++ +..+.-..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcch
Confidence 3345667777788888999888888763 3333344443333332 22222 12222122211
Q ss_pred -----------CCCChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007878 107 -----------GEPDLITFCAFLNACSD--CSLLQLGRQLHGFLVRSG-FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 107 -----------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
+.|+..+...-+.+++. .++-..+.+.+-.+.... ++.|+....++...|...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 23444444444444433 344455555555444443 5677888999999999999999999999987
Q ss_pred CCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhH
Q 007878 173 IDKNDVSWCSM---LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFV 249 (586)
Q Consensus 173 ~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (586)
..-|+.+...| .-.+.+.|+.++...+...+.... .-....|..-+......++++.|..+-+..++.... ++..
T Consensus 259 ~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~a 336 (564)
T KOG1174|consen 259 LCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEA 336 (564)
T ss_pred hhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchH
Confidence 65555444333 344567888888888777776532 112222322333344567788888877777766543 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH-HHh
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL-SAC 325 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll-~a~ 325 (586)
+-.-...+...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~---~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL---FQNSARSLTLFGTLVL 413 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH---hhcchhhhhhhcceee
Confidence 44445667788999999999987653 47889999999999999999999887776551 233555555442 233
Q ss_pred h-ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 007878 326 S-RAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 326 ~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a 402 (586)
. ....-++|..+++... .+.|+ ....+.+...+...|+.++++.++++. ...||....+.|...+...+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 2334578888888765 56787 456677888899999999999999987 6678999999999999999999999
Q ss_pred HHHHHHHhccCCCCchh
Q 007878 403 RIAADNLFKLDPNDSGN 419 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~ 419 (586)
...|..+++++|++..+
T Consensus 491 m~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhcCccchHH
Confidence 99999999999987543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-12 Score=84.46 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=43.6
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
||+++||++|.+|++.|++++|.++|++|.+ .|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~--~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK--RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHcC
Confidence 6888888889998888889999999999888 8888888888888888874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-09 Score=95.64 Aligned_cols=295 Identities=11% Similarity=0.082 Sum_probs=193.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh-------HHHHHHHHHHcCChHHHH
Q 007878 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS-------WCSMLVVYVQNYEEENGC 197 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~ 197 (586)
++.++|...|-+|.+.. +.+..+.-+|.+.|-+.|.++.|.++-+.+.+....| .-.|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56777888888777653 3345566677788888888888888877665432222 234556677777777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007878 198 QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN 277 (586)
Q Consensus 198 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 277 (586)
.+|..+.+.+. --......++..|-...+|++|..+-..+.+.+.++... -+...|
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAqfy-------------------- 183 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQFY-------------------- 183 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHHHH--------------------
Confidence 77777765431 122334445555555556666665555555554332211 112222
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV-TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYAC 356 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 356 (586)
.-+...+....+.+.|..++.+..+ .+ |+.+ .-..+.......|+++.|.+.++.+.+. +..--..+...
T Consensus 184 ----CELAq~~~~~~~~d~A~~~l~kAlq--a~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~ 254 (389)
T COG2956 184 ----CELAQQALASSDVDRARELLKKALQ--AD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEM 254 (389)
T ss_pred ----HHHHHHHhhhhhHHHHHHHHHHHHh--hC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence 2234444556788899999999887 33 5543 3335567788999999999999999765 33333677889
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh--hcCCh
Q 007878 357 VVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA--ATGRW 433 (586)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~ 433 (586)
|..+|...|+.++...++.++ ...+....-..+..--....-.+.|.....+-+...|.--..|..+-.-.. .-|++
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 999999999999999999887 444555555555555455556677888777777778875444444433333 45679
Q ss_pred HHHHHHHHHHHhCCCccCCc
Q 007878 434 EEADLVRKEMKDVGIKKGAG 453 (586)
Q Consensus 434 ~~a~~~~~~m~~~g~~~~~~ 453 (586)
.+...+++.|....++..|.
T Consensus 335 k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCC
Confidence 99999999998877765553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-08 Score=95.55 Aligned_cols=371 Identities=11% Similarity=-0.032 Sum_probs=240.7
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCC-hhhhHHHHHHHHhcCCchHHHHHhccCCCCCcc---cHHHHHHHHHcCCChhH
Q 007878 19 ASSALHIPVTGKQLHALALKSGQIHD-VFVGCSAFDMYSKTGLKDDADKMFDEMPERNLA---TWNAYISNAVLGGRPKN 94 (586)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 94 (586)
-|-+.|.+++|...+.+.+.. .|| +.-|...-..|...|+|++..+--....+-++. ++..-.+++-..|++.+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 356778899999999998875 566 777888888898999988887766655543332 33333345555566666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH--------HHHH-hC--CCCChhHHHHHHHHHHh-----
Q 007878 95 AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHG--------FLVR-SG--FDGNVSVCNGLVDFYGK----- 158 (586)
Q Consensus 95 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~-~g--~~~~~~~~~~ll~~~~~----- 158 (586)
|+.=.. ..+++..+....-.-.+.+++. +-.+ .+ +-|.....++....+..
T Consensus 202 al~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 202 ALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 543222 2222222222211111122211 1111 11 11221111111111110
Q ss_pred ----c-------------------CChHHHHHHHhcC-------CCCC---h------hhHHHHHHHHHHcCChHHHHHH
Q 007878 159 ----C-------------------NEVGLAKVVFDGI-------IDKN---D------VSWCSMLVVYVQNYEEENGCQM 199 (586)
Q Consensus 159 ----~-------------------g~~~~A~~~~~~~-------~~~~---~------~~~~~li~~~~~~g~~~~A~~~ 199 (586)
. ..+..|...+.+- ...+ . .+...-..-+.-.|+.-.|...
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 0122222222111 0111 1 1111112234557888999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C
Q 007878 200 FLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---R 276 (586)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~ 276 (586)
|+........++. .|.-+...|....+.++..+.|....+.++. |..+|.--..++.-.+++++|..=|++... .
T Consensus 349 ~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 9998886543333 2777777889999999999999999998876 777888888888899999999999999876 3
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC------
Q 007878 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG------ 350 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------ 350 (586)
++..|-.+-.+..+.+++++++..|++.++ .++--+..|+.....+...+++++|.+.|+..+. +.|+
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk---kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v 500 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKK---KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIV 500 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccc
Confidence 556676677777788999999999999987 2444478899999999999999999999998863 3444
Q ss_pred ---hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007878 351 ---AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 351 ---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
+.+.-.++..- -.+++.+|.+++++. .+.| ....|.+|...-.+.|+.++|+++|++...+.
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22222333222 448999999999998 5555 45789999999999999999999999987754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-09 Score=105.27 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=171.5
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--
Q 007878 213 FMISSVLSACARIAGLELGRSVHAVAVKA-----CV-EGNIF-VGSALVDMYGKCGSIQDAEIAFNKMPE-------R-- 276 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-------~-- 276 (586)
.+...+...|...|+++.|..++...++. |. .|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566778888888888888888877664 21 12222 234467788889999999888887752 2
Q ss_pred --CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc---CCCC-CCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcC--C
Q 007878 277 --NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR---CEAV-PNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYG--I 347 (586)
Q Consensus 277 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~g~~-pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 347 (586)
-..+++.|...|.+.|++++|...+++..+.- .+.. |+. ..++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22467777788999999988888777665410 1222 222 3466777788999999999999987765543 2
Q ss_pred CCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-------CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-
Q 007878 348 KPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-------PM--RP-TISVWGALLNACRVYGKPELGRIAADNLFKL- 412 (586)
Q Consensus 348 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 412 (586)
.++ ..+++.|...|...|++++|.++++++ .. .+ ....++.|...|.+.+++++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 232 467899999999999999999999987 11 12 2456778888899999999999998887653
Q ss_pred ---CC---CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 413 ---DP---NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 413 ---~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+| +-..+|..|+..|...|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34 4456788999999999999999999988763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-08 Score=91.80 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=191.8
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007878 159 CNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
.|++..|+++..+-.+ .....|..-+.+--+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655322 2233444444555666777777777776665422334444455555666777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----------eeHHHHHHHHHHhcCCHHHHHHHHHHh
Q 007878 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN-----------LVCWNAIIGGYAHQGHADMALSSFEEM 304 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 304 (586)
.++.+.++. ++.+.......|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 777776655 56677777788888888888888887776522 236777777666666666655666665
Q ss_pred hhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 007878 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMR 380 (586)
Q Consensus 305 ~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 380 (586)
.. ..+-++..-.+++.-+...|+.++|.++..+..++ +..|+.. .+ -...+-++...-++..++. |..
T Consensus 256 pr---~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 256 PR---KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred cH---HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 54 34556666778888899999999999999988776 6666511 11 1233455555544444443 444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 381 PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
| ..+.+|..-|.+++.+.+|...++.+++..|. ...|..++.++.+.|+.++|.+++++....
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4 78899999999999999999999999998886 678999999999999999999999987643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-09 Score=111.86 Aligned_cols=257 Identities=11% Similarity=0.015 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHh---------cccCcHHHHHHHHHHHH
Q 007878 176 NDVSWCSMLVVYVQ-----NYEEENGCQMFLTARREGVEPKD-FMISSVLSACA---------RIAGLELGRSVHAVAVK 240 (586)
Q Consensus 176 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 240 (586)
+...|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555566655322 23467899999998874 4554 34444444333 22447899999999998
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-H
Q 007878 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-V 316 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-~ 316 (586)
..+. +...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+. .
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~----l~P~~~~ 407 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK----LDPTRAA 407 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCChh
Confidence 8765 678888888999999999999999999764 4 356788888899999999999999999988 34553 2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISV-WGALLNAC 393 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~ 393 (586)
.+..++..+...|++++|...++++.+. ..|+ ...+..+...|...|++++|...++++ +..|+... ++.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3334455566789999999999988653 2353 555777888899999999999999987 44555444 44455556
Q ss_pred HHcCCHHHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 394 RVYGKPELGRIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...| +.|...++.+.+.. |.++.. +...|.-.|+-+.+... +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 47777777776643 443333 56667778888877777 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-09 Score=96.32 Aligned_cols=161 Identities=11% Similarity=-0.013 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007878 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+....+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3456666777777777777777777766542 223444455555556666666666666666555433 33444445555
Q ss_pred HHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCH
Q 007878 257 YGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~ 331 (586)
|...|++++|.+.|++..+ .....+..+...+...|++++|...|.+... .. +.+...+..+...+...|++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--ID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-cCChHHHHHHHHHHHHcCCH
Confidence 5555555555555555432 1122333344444444555555555544444 11 11223344444444444444
Q ss_pred HHHHHHHHHhH
Q 007878 332 EKGMKIFYSMT 342 (586)
Q Consensus 332 ~~a~~~~~~~~ 342 (586)
++|...+++..
T Consensus 186 ~~A~~~~~~~~ 196 (234)
T TIGR02521 186 KDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-08 Score=95.75 Aligned_cols=279 Identities=10% Similarity=-0.026 Sum_probs=216.5
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007878 142 FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV---SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSV 218 (586)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 218 (586)
...+..+...-.+-+...+++.+..++++...+.|+. .+..-|.++...|+..+-..+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456667777778888899999999999998776554 4555678889999998888888888875 34567789998
Q ss_pred HHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCCHH
Q 007878 219 LSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 295 (586)
.--|...|+.++|++.+......+.. -...|-.+...|+-.|.-+.|...+....+ | ....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 88888889999999999988776544 345677888899999999998877765443 1 1111222344578889999
Q ss_pred HHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc-CC---C-CChHHHHHHHHHHHhcCChHH
Q 007878 296 MALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY-GI---K-PGAEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~ 369 (586)
-|.+.|.+... +-| |+..++-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++
T Consensus 398 LAe~Ff~~A~a----i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 398 LAEKFFKQALA----IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHh----cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999876 455 56777777777777899999999998876211 11 1 135578899999999999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 370 AYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 370 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
|+..+++. ... -|..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|..+
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999987 333 4788899999999999999999999999999999997766666543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-07 Score=94.73 Aligned_cols=399 Identities=12% Similarity=0.055 Sum_probs=258.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhh-HH
Q 007878 40 GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLIT-FC 115 (586)
Q Consensus 40 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 115 (586)
.+..|+.+|..|.-+..++|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+.+.-......|+..+ +-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567899999999999999999999999998754 3455799999999999999999999988765433354443 33
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhcC-----------ChHHHHHHHhcCCCC---C
Q 007878 116 AFLNACS-DCSLLQLGRQLHGFLVRS--GF--DGNVSVCNGLVDFYGKCN-----------EVGLAKVVFDGIIDK---N 176 (586)
Q Consensus 116 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~---~ 176 (586)
..-+.|. +.+..+++...-.+++.. +. ......|-.+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333444 446777777777766662 11 112334444544554321 234556666665433 2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007878 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
+.+---+.--|+..++.+.|++..++....+-.-+...|..+.-.++..+++..|..+.+.....-.. |......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhh
Confidence 22222233457778899999999999988765677778888888888889999999888766543211 00000000111
Q ss_pred HHhcCCHHHHH--------------------------HHHhhCCC-----CCe-eHHHHHHHHHHhcCCHHHHHHHHHHh
Q 007878 257 YGKCGSIQDAE--------------------------IAFNKMPE-----RNL-VCWNAIIGGYAHQGHADMALSSFEEM 304 (586)
Q Consensus 257 ~~~~g~~~~A~--------------------------~~~~~m~~-----~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 304 (586)
-...++.++|. +.+..+.- .+. .++..+ .+... -+.+.+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-c
Confidence 11123333332 22222210 111 222222 22221 11111110000 2
Q ss_pred hhccCCCCC--CH------HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007878 305 TSMRCEAVP--NY------VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 305 ~~~~~g~~p--d~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
.. ..+.| +. ..+......+.+.+..++|...+.+..+ ...-....|......+...|.+++|.+.|..
T Consensus 634 p~--s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 634 PS--STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred Cc--ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 22 22223 31 2234455677888999999988887753 2233466777777888999999999999988
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 377 M-PMRPT-ISVWGALLNACRVYGKPELGRI--AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 377 m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
. .+.|+ +.+..++...+.+.|+...|.. ++..+.+.+|.++..|..++.++.+.|+.++|.+.|......
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7 66665 5678889999999998888887 999999999999999999999999999999999999988764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-08 Score=98.74 Aligned_cols=236 Identities=9% Similarity=0.102 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC----------CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCC
Q 007878 148 VCNGLVDFYGKCNEVGLAKVVFDGIID----------KNDV-SWCSMLVVYVQNYEEENGCQMFLTARRE-----G-VEP 210 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p 210 (586)
+...|..+|...|+++.|..+++...+ +.+. ..+.+...|...+++++|..+|+++..- | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 333455555555555555555543321 1221 1234566777888888888888877542 1 111
Q ss_pred C-HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCee-HHHHHH
Q 007878 211 K-DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLV-CWNAII 285 (586)
Q Consensus 211 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~-~~~~li 285 (586)
. ..+++.|..+|.+.|++++|...++.+.+. ++... .+.+. .++.++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHHH
Confidence 1 123333444455555555554444433321 11100 01111 233344
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccC-CCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc----C-CCCC-hHHH
Q 007878 286 GGYAHQGHADMALSSFEEMTSMRC-EAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY----G-IKPG-AEHY 354 (586)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~-g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~ 354 (586)
..++..+++++|..++++..+.-. -+.++ ..+++.|...|.+.|++++|.++|++++... + ..+. ...+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 555666666666666665443100 01122 3567788888888888888888888776543 1 1222 4566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 355 ACVVDLLGRAGLVDRAYEIIKEM--------PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+.|...|.+.+++.+|.++|.+. +..|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77778888888888888888775 23344 36788999999999999999999888774
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.2e-09 Score=99.18 Aligned_cols=211 Identities=14% Similarity=0.030 Sum_probs=147.7
Q ss_pred cCcHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHH
Q 007878 226 AGLELGRSVHAVAVKAC-VEG--NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 122 245677778889999999999999988764 456789999999999999999999
Q ss_pred HHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 007878 300 SFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM- 377 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 377 (586)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++.
T Consensus 120 ~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLE----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999987 3465 577788888888999999999999988753 555432222223345567899999999664
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 378 -PMRPTISVWGALLNACRVYGKPELGRIAADNLF-------KLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 378 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...|+...| .......|+..++ ..++.+. ++.|....+|..++..|...|++++|...|++..+..
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223333222 2222334555443 2444443 3445666789999999999999999999999988644
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-06 Score=84.19 Aligned_cols=403 Identities=12% Similarity=0.045 Sum_probs=221.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHH--HHHHHH--cCCCh
Q 007878 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNA--YISNAV--LGGRP 92 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g~~ 92 (586)
+.-....+++++|.+....++..+ +.|...+..-+-+..+.+.+++|+++.+.-..- .+++. +=.+|| +.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 344566778999999999998876 556666666677778889999999777654321 12222 234444 56788
Q ss_pred hHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHh
Q 007878 93 KNAIDAFINLRRTGGEPDL-ITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDG-NVSVCNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 93 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
++|+..++ |..++. .+...-...|.+.++++++..+|+.+.+++.+. +...-..++.+-.. -.+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence 88888877 333333 255555556778888888888888887765321 11111111111000 0000 122
Q ss_pred cCCCCChhhHHH---HHHHHHHcCChHHHHHHHHHHHHCC-------CCCCH------h-HHHHHHHHHhcccCcHHHHH
Q 007878 171 GIIDKNDVSWCS---MLVVYVQNYEEENGCQMFLTARREG-------VEPKD------F-MISSVLSACARIAGLELGRS 233 (586)
Q Consensus 171 ~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~------~-t~~~ll~~~~~~~~~~~a~~ 233 (586)
..+.....+|.. ....++..|++.+|+++++...+.+ -.-+. . .-.-+.-++-..|+-++|.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 222211212221 1223344455555555554441110 00000 0 00112222334455555555
Q ss_pred HHHHHHHhCCCC--------------------------------------------------chhHHHHHHHHHHhcCCH
Q 007878 234 VHAVAVKACVEG--------------------------------------------------NIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 234 ~~~~~~~~~~~~--------------------------------------------------~~~~~~~li~~~~~~g~~ 263 (586)
++...++..+.. ....-+.++.+|. +..
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~ 323 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKM 323 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhH
Confidence 554444433221 1111222333332 334
Q ss_pred HHHHHHHhhCCCC-CeeHHHHHHHHHH--hcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCHHHHHHHH
Q 007878 264 QDAEIAFNKMPER-NLVCWNAIIGGYA--HQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 264 ~~A~~~~~~m~~~-~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~ 338 (586)
+.++++-...+.. ....+.+++.... +.....+|.+++...-+ . .|+. +.....+......|+++.|.+++
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--G--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--c--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4455555554431 1233444444332 22346777787777765 2 2443 34445566678899999999999
Q ss_pred H--------HhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007878 339 Y--------SMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--------PMRPT-ISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 339 ~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~ 401 (586)
. .+.+ .+-. +.+...++.++.+.++-+-|..++.+. +-++. ..+|.-+..--.++|+-++
T Consensus 400 ~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 4432 2333 445667788888888877776666654 22222 1233333344456799999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
|..+++++.+.+|++..+...+..+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999999999999875 45666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-06 Score=83.84 Aligned_cols=429 Identities=12% Similarity=0.086 Sum_probs=261.7
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHh-CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007878 12 TFPCLFKASSALHIPVTGKQLHALALKS-GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
.|-..++.+...+++..-+..|+..++. .+.-...+|.-.+......|-++.+.++++....-++..-+--|.-+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3444555666778888888888887764 223334578888888888888888988888877666666777888888899
Q ss_pred ChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhcC
Q 007878 91 RPKNAIDAFINLRRTG------GEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGF--DGN--VSVCNGLVDFYGKCN 160 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~ll~~~~~~g 160 (586)
++++|.+.+....... .+.+...|..+-...++..+.-....+ +.+++.|+ -+| -..|++|.+-|.+.|
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 9999988888775422 233444566555555555443332222 22233332 233 357999999999999
Q ss_pred ChHHHHHHHhcCCCC--ChhhHHHHHHHHHHc----------------CC------hHHHHHHHHHHHHCCC--------
Q 007878 161 EVGLAKVVFDGIIDK--NDVSWCSMLVVYVQN----------------YE------EENGCQMFLTARREGV-------- 208 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-------- 208 (586)
+++.|..+|++.... .+.-++.+-.+|++- |+ ++-.+.-|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999876442 222333333333321 11 1222333444333210
Q ss_pred ---CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh-C----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe--
Q 007878 209 ---EPKDFMISSVLSACARIAGLELGRSVHAVAVKA-C----VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNL-- 278 (586)
Q Consensus 209 ---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 278 (586)
+-+..+|..-.. ...|+..+-...+.++++. + +..-...+..+.+.|-..|+++.|+.+|++..+.+-
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 011122222111 1234556666677776653 1 111235678889999999999999999999876332
Q ss_pred -----eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC---------CCCCHHH------HHHHHHHhhccCCHHHHHHHH
Q 007878 279 -----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCE---------AVPNYVT------LVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 279 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g---------~~pd~~t------~~~ll~a~~~~g~~~~a~~~~ 338 (586)
.+|..-...-.++.+++.|+++.++......+ .++-... |...+..--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34555555566788999999998887652111 0111112 223333334456777777888
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C-CC-CC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHhc
Q 007878 339 YSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P-MR-PT-ISVWGALLNACRV---YGKPELGRIAADNLFK 411 (586)
Q Consensus 339 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~-p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 411 (586)
+.+..-.-..|... ....-.+-...-++++.+.+++- + ++ |+ ...|++.+.-+.+ ...++.|..+|+++++
T Consensus 501 driidLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 501 DRIIDLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 87765322233322 12222344556788999999886 2 22 44 3578888877654 2368999999999999
Q ss_pred cCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 412 LDPNDSG--NHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 412 ~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..|+... .|...+..-.+-|....|..++++...
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8875332 333334444456888888888888643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-09 Score=95.55 Aligned_cols=227 Identities=13% Similarity=0.069 Sum_probs=132.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007878 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC 260 (586)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (586)
+.|..+|.+.|.+.+|.+.|+.-..+ .|-..||..+-.+|.+..+.+.|..++.+-++.-+. |+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 44566666666666666666665553 344445555555555555555555555554443221 333333334444444
Q ss_pred CCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007878 261 GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 261 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
++.+ +|.++|+...+. . ..+.....++...|.-.++++-|+.+++.
T Consensus 304 ~~~~-------------------------------~a~~lYk~vlk~--~-~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 304 EQQE-------------------------------DALQLYKLVLKL--H-PINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred HhHH-------------------------------HHHHHHHHHHhc--C-CccceeeeeeeeccccCCChHHHHHHHHH
Confidence 4444 444444444441 1 11233333444444444445555555544
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 341 MTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM---PMRP--TISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 341 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+..- |+. +.+.|+.+.-.|.-.+++|-++.-|++. ...| -..+|..|.......|++..|.+.|+.++..+|+
T Consensus 350 iLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 4432 322 3334444444444444555444444443 1112 2346777777777789999999999999999999
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 416 DSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+..+++.|+-.-.+.|++++|+.+++...+.
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999999999999988764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=107.57 Aligned_cols=225 Identities=14% Similarity=-0.009 Sum_probs=169.9
Q ss_pred CHhHHHHHHHHHhc-----ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC-
Q 007878 211 KDFMISSVLSACAR-----IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG---------KCGSIQDAEIAFNKMPE- 275 (586)
Q Consensus 211 ~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~- 275 (586)
+...|...+.+-.. .+++++|...+++.++..+. +...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 33445555554321 24568999999999987655 4556666665554 23458899999998765
Q ss_pred --CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-
Q 007878 276 --RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA- 351 (586)
Q Consensus 276 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~- 351 (586)
.+..+|..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...++...+ +.|+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~ 406 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRA 406 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCh
Confidence 3567788888888999999999999999988 3365 56788888899999999999999999974 45653
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM--PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
..+..+...+...|++++|...+++. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 23334455577789999999999887 22354 4456677777889999999999999998888887778888888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 007878 429 ATGRWEEADLVRKEMKD 445 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~ 445 (586)
..| ++|...++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 487 QNS--ERALPTIREFLE 501 (553)
T ss_pred ccH--HHHHHHHHHHHH
Confidence 888 588887777765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-06 Score=84.63 Aligned_cols=423 Identities=13% Similarity=0.047 Sum_probs=263.7
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcC
Q 007878 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLG 89 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 89 (586)
|-.+++.| ..+++..+....+.+++ +.+....+.....-.+...|+-++|......-.. ++.+.|..+.-.+...
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44455544 45778888888888877 3333444444444445567899999988876654 4667899888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007878 90 GRPKNAIDAFINLRRTGGEPD-LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.++++|++.|+..... .|| ...+.-+--.-++.++++.....-.+..+.. +.....|..+..++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874 444 4455544444556788887777776666653 44566788888888889999999888
Q ss_pred HhcCCC-----CChhhHHH------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhcccCcHHHHHHHH
Q 007878 169 FDGIID-----KNDVSWCS------MLVVYVQNYEEENGCQMFLTARREGVEPKDFMI-SSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 169 ~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~ 236 (586)
.++... ++...+.- .......+|..++|++.+..-... ..|...+ ..-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 776522 33333322 234567788888888887655432 1233332 233455678899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhCCC--CCeeHHHHHHHHHHhcCC-HHHHHHHHHHhhhccCCCC
Q 007878 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAE-IAFNKMPE--RNLVCWNAIIGGYAHQGH-ADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~g~~ 312 (586)
.++...+. +...|--+..++++--+.-++. .+|....+ |-...-..+--......+ .+..-.++..+.+ .|++
T Consensus 244 ~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~--Kg~p 320 (700)
T KOG1156|consen 244 RLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS--KGVP 320 (700)
T ss_pred HHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh--cCCC
Confidence 99887754 5555666666665443333443 66665543 111000000011111122 2333445566666 5655
Q ss_pred CCHHHHHHHHHHhhccCCHH----HHHHHHHHhHHhc-------C--CCCChH--HHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 313 PNYVTLVCVLSACSRAGAVE----KGMKIFYSMTLKY-------G--IKPGAE--HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~~-------~--~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
|-...+ .+-|-.....+ -+..+...+.... + -+|+.. ++-.++..+-+.|+++.|+.+++..
T Consensus 321 ~vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 SVFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred chhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 433322 22222211111 1111222111100 0 145544 4457788899999999999999987
Q ss_pred -CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 378 -PMRPTIS-VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 378 -~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
.-.|+.+ .|..-...+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5456543 3444456688889999999999999999876655444455556688999999999998887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-07 Score=90.75 Aligned_cols=218 Identities=10% Similarity=-0.057 Sum_probs=143.5
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007878 191 YEEENGCQMFLTARREG-VEPK--DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+.+.++..+. +...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666432 2222 234555556677778888888888888777654 6778888888888999999999
Q ss_pred HHHhhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007878 268 IAFNKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 268 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
..|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~----~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ----DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 88888754 3 456777788888888999999999998887 235543222222234456788999999976543
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHH--HHHHHhC-CCC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 345 YGIKPGAEHYACVVDLLGRAGLVDRA--YEIIKEM-PMR----P-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
...|+...+ .++.. ..|+..++ .+.+.+. ... | ....|..+...+...|++++|+..|+++.+.+|++
T Consensus 194 -~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 233433222 23332 34544333 3223221 111 1 23578889999999999999999999999999754
Q ss_pred ch
Q 007878 417 SG 418 (586)
Q Consensus 417 ~~ 418 (586)
..
T Consensus 270 ~~ 271 (296)
T PRK11189 270 FV 271 (296)
T ss_pred HH
Confidence 33
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-05 Score=76.76 Aligned_cols=264 Identities=12% Similarity=0.137 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhcccCcHHHHHHHHHHHHhC-----------CC
Q 007878 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPK---DFMISSVLSACARIAGLELGRSVHAVAVKAC-----------VE 244 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~ 244 (586)
.|-.+...|-.+|+.+.|..+|.+..+-..+-- ..+|..-...=.+..+++.|..+.+.+.... .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 355556666666666666666665544321110 0111111111123344555555554443210 00
Q ss_pred C------chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHH---HHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007878 245 G------NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIG---GYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 245 ~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
+ +..+|+..++.--..|-++....+++++.+--+.|-..+++ -+-.+.-++++.+++++-+. .---|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~--LFk~p~v 546 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS--LFKWPNV 546 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc--cCCCccH
Confidence 1 12334444444455566666666666665422222222221 12345567888888887765 2223443
Q ss_pred -HHHHHHHHHhh---ccCCHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--HHH
Q 007878 316 -VTLVCVLSACS---RAGAVEKGMKIFYSMTLKYGIKPGAE--HYACVVDLLGRAGLVDRAYEIIKEMP--MRPT--ISV 385 (586)
Q Consensus 316 -~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~ 385 (586)
..|++.+.-+. ....++.|+.+|++..+ +.+|... .|-.....=-+-|....|+.++++.. +++. ...
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34555554443 34578999999999975 6666522 22233333345688889999999983 3332 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh--HHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 386 WGALLNACRVYGKPELGRIAADNLFKLDPNDSGN--HVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
|+..|.--...=-+.....+++++++.-|++..- ..-.+.+-.+.|..+.|+.++..-.+-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 7877766544444556678899999887765433 234566778899999999998876553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-06 Score=84.45 Aligned_cols=412 Identities=14% Similarity=0.119 Sum_probs=255.6
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccH-HHHHHHHHc-----C
Q 007878 18 KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATW-NAYISNAVL-----G 89 (586)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~-----~ 89 (586)
..+...|+++.|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.. |+-..| ..+..+..- .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4567789999999998765443 344456677888999999999999999999876 433333 444444422 2
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007878 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL-QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.+.+...++|+++...- |.......+.-.+.....+ ..+...+..+++.|+| .+++.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 35677788899887643 4444443333233332222 2355566667777755 3566677777755555555555
Q ss_pred HhcCC------------------CCChhhH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcccC
Q 007878 169 FDGII------------------DKNDVSW--CSMLVVYVQNYEEENGCQMFLTARREGVEPK-DFMISSVLSACARIAG 227 (586)
Q Consensus 169 ~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 227 (586)
+.... .|....| .-+...|-..|++++|++++++..+. .|+ ...|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 54321 1233334 55677888999999999999999885 465 5577788889999999
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee----------HH--HHHHHHHHhcCCHH
Q 007878 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLV----------CW--NAIIGGYAHQGHAD 295 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~--~~li~~~~~~g~~~ 295 (586)
+.+|....+........ |..+-+-.+..+.++|++++|.+++....+++.. .| .-...+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999998876 8889999999999999999999999888765421 23 22456788999999
Q ss_pred HHHHHHHHhhhccCCCC---CC----------HHHHHHHHHHhhccC-------CHHHHHHHHHHhHHhcCCCC------
Q 007878 296 MALSSFEEMTSMRCEAV---PN----------YVTLVCVLSACSRAG-------AVEKGMKIFYSMTLKYGIKP------ 349 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~---pd----------~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p------ 349 (586)
.|++.|....+.=..+. -| ..+|..++...-+.. -...|.+++-.+........
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~ 402 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEA 402 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 99887776654111111 22 223333333221111 12334444444432210000
Q ss_pred -----ChHHHHHHHHHH---HhcCChHHHHHHHH-----------hC----C--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007878 350 -----GAEHYACVVDLL---GRAGLVDRAYEIIK-----------EM----P--MRPTISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 350 -----~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m----~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
+..--..+-.-. .+...-+++...-. +. + ..||+.- ..|+ ....-.++|..
T Consensus 403 ~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~k 478 (517)
T PF12569_consen 403 DNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMK 478 (517)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHH
Confidence 000000110000 01111111111100 00 1 1122211 1122 12335688999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 405 AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 479 fl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 479 FLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-07 Score=91.91 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=100.1
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc-------------CCCCChH--HHHHHHHHH
Q 007878 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY-------------GIKPGAE--HYACVVDLL 361 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~ 361 (586)
+...+..+.. .|+++ +|+.|-..|......+-..+++....... .-+|+.. ++.-+.+.|
T Consensus 130 ~~~yl~~~l~--KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 130 LDEYLRPQLR--KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHh--cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 3444555555 55433 44444444554444444444444433211 1134432 445667788
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 007878 362 GRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
-..|++++|++++++. ...|+ +..|..-...+...|++++|....+.+.++++.|-..-.-.+..+.++|+.++|.++
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899999999999876 55565 456777777788899999999999999999988887777788888899999999999
Q ss_pred HHHHHhCCC
Q 007878 440 RKEMKDVGI 448 (586)
Q Consensus 440 ~~~m~~~g~ 448 (586)
+......+.
T Consensus 285 ~~~Ftr~~~ 293 (517)
T PF12569_consen 285 ASLFTREDV 293 (517)
T ss_pred HHhhcCCCC
Confidence 988877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-08 Score=89.64 Aligned_cols=222 Identities=12% Similarity=0.009 Sum_probs=125.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhcc
Q 007878 149 CNGLVDFYGKCNEVGLAKVVFDGII--DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS-SVLSACARI 225 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 225 (586)
-+-+..+|.+.|-+.+|.+.|+.-. .+-+.||-.|-..|.+-.+++.|+.+|.+-.+. .|-.+||. .+...+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3445556666666666666665542 234555555666666666666666666555542 34444443 233445555
Q ss_pred cCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHH
Q 007878 226 AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
++.+.+.++++...+.... ++....++...|.-.++.+-|...+.++.+ .+...|+.+.-+|.-.+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 6666666666666555432 444445555555556666666666665443 455556666656666666666666666
Q ss_pred HhhhccCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 303 EMTSMRCEAVPNY--VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 303 ~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+... .--.|+. ..|-.+.......|++..|.+.|+-.... -.-+.+.++.|.-.-.+.|++++|..+++..
T Consensus 383 RAls--tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALS--TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHh--hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 6555 2222332 33444555555666777776666665432 1223566666666666777777777776665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=82.77 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVV 358 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 358 (586)
...+.-+|.+.|+...|..-+++.++ . .|+ ..++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG 110 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--H--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--h--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhh
Confidence 34456677888888888888888877 2 254 5677777778888888888888888776 34554 56777777
Q ss_pred HHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 007878 359 DLLGRAGLVDRAYEIIKEMPMRP----TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWE 434 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 434 (586)
.-+|..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++.+|+.+.....+.....+.|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 77888888888888888873333 24678888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 007878 435 EADLVRKEMKDVGI 448 (586)
Q Consensus 435 ~a~~~~~~m~~~g~ 448 (586)
+|..+++.....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998877654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-06 Score=79.92 Aligned_cols=414 Identities=10% Similarity=-0.016 Sum_probs=241.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHH-HHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCCh
Q 007878 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCS-AFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRP 92 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 92 (586)
+.-+...+++..|..+++.-...+-+.. ...+. +...|.+.|++++|...+..+.+ ++...|--|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 3344455677777777776553332111 12222 23445677888888888876543 4555566665555556777
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007878 93 KNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 93 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
.+|..+-.... -++..-..++...-+.++-++...+++.+... ..-.-+|.++..-.-.+.+|.+++.++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766654432 13334445555555677777777777665432 233445666655566788999999887
Q ss_pred CCC--ChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcHHHHH--------------H
Q 007878 173 IDK--NDVSWCS-MLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLELGRS--------------V 234 (586)
Q Consensus 173 ~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~--------------~ 234 (586)
... +-...|. |.-+|.+..-++-+.+++.--.++ -||. +..+.......+.=+-..|.+ .
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 553 3445554 445677777777777777766654 2433 233322222222111111111 1
Q ss_pred HHHHHHhCC------C------C-----chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCC----
Q 007878 235 HAVAVKACV------E------G-----NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGH---- 293 (586)
Q Consensus 235 ~~~~~~~~~------~------~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~---- 293 (586)
...+.++++ + | -+..--.|+-.|.+.+++++|..+.++....++.-|-.-.-.++..|+
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 112222210 0 0 011222345568889999999999888765333333222222333332
Q ss_pred ---HHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH
Q 007878 294 ---ADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 294 ---~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 369 (586)
..-|.+.|+..-. .+..-|. .--.++.+++.-..++++.+-+++.+.. +-...|...+ .+.++++..|.+.+
T Consensus 336 reHlKiAqqffqlVG~--Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGE--SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHHHhcc--cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHH
Confidence 4455666655544 4433332 2334566677777889999999988853 3344444444 57899999999999
Q ss_pred HHHHHHhCC-CC-CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccC-CCCc-hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 370 AYEIIKEMP-MR-PTISVWGALLNA-CRVYGKPELGRIAADNLFKLD-PNDS-GNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 370 A~~~~~~m~-~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
|+++|-.+. .+ .|..+|.+++.- |...++++.|-.+ +++.+ |.+. .....+++-|.+++.+--|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999998872 11 467778776655 5667788776554 44444 3333 334467888999999999999999887
Q ss_pred hCCCcc
Q 007878 445 DVGIKK 450 (586)
Q Consensus 445 ~~g~~~ 450 (586)
..+..|
T Consensus 489 ~lDP~p 494 (557)
T KOG3785|consen 489 ILDPTP 494 (557)
T ss_pred ccCCCc
Confidence 755433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-05 Score=72.60 Aligned_cols=407 Identities=11% Similarity=0.049 Sum_probs=225.5
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCC-----
Q 007878 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGR----- 91 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~----- 91 (586)
..++.+.|++++|..++..+.... .++...+-.|.-.+.-.|.+.+|..+-...++ ++..-..|...-.+.++
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHH
Confidence 344568899999999999988754 56666666666666667889999988877654 11111222222233333
Q ss_pred -------------------------hhHHHHHHHHHHHCCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCC
Q 007878 92 -------------------------PKNAIDAFINLRRTGGEPDLITFCAFLN-ACSDCSLLQLGRQLHGFLVRSGFDGN 145 (586)
Q Consensus 92 -------------------------~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~ 145 (586)
+.+|+++|.+.... .|+-...|.-+. +|.+..-++-+.+++.-.++. ++.+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDS 218 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCc
Confidence 34444444444332 122222222221 233334444444444333332 1222
Q ss_pred hhHHHHHHHHHHhc--CChHHHHHHHhcCCCCChhhHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007878 146 VSVCNGLVDFYGKC--NEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY-----EEENGCQMFLTARREGVEPKDFMISSV 218 (586)
Q Consensus 146 ~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~l 218 (586)
....|.......+. |+..++ -..++.. |...--..+.-+++.+ .-+.|++++-.+.+ +.|. .-..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~--E~k~lad-N~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL 291 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAED--EKKELAD-NIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNL 291 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHH--HHHHHHh-cccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhh
Confidence 22233222222221 111111 1111100 0000001122222221 23455555444332 2232 22334
Q ss_pred HHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHH
Q 007878 219 LSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV-----DMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGY 288 (586)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~ 288 (586)
+--+.+.+++.+|..+...+.- ..|-..+...++ .-......+.-|.+.|+..-+ .++.--.+|.+.+
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 4456778888888777654321 112222222222 212222235667888876654 3445567788888
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHHhcCCh
Q 007878 289 AHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY-ACVVDLLGRAGLV 367 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~ 367 (586)
.-..++++.+-.+..... -- .-|...--.+..|.+..|.+.+|.++|-.+... .+ .|..+| +.|.+.|.+++.+
T Consensus 370 FL~~qFddVl~YlnSi~s--YF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES--YF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHH--Hh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCc
Confidence 888999999999988876 33 333333345778999999999999999887421 22 345555 4667899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 368 DRAYEIIKEMPMRPTISVWGALL-NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+-|.+++-++....+..+.-.+| .-|.+.+.+=-|-+.|+.+..++|.. ..| .|+-....-+|..+...
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANH 514 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcC
Confidence 99999999986544555544444 55999999999999999999999863 322 45555566677777665
Q ss_pred CCccCC
Q 007878 447 GIKKGA 452 (586)
Q Consensus 447 g~~~~~ 452 (586)
.-.|.|
T Consensus 515 ~~~~~p 520 (557)
T KOG3785|consen 515 KTDPIP 520 (557)
T ss_pred CCCCCc
Confidence 444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-05 Score=82.14 Aligned_cols=402 Identities=13% Similarity=0.022 Sum_probs=255.6
Q ss_pred CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC----CCcccHHH
Q 007878 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE----RNLATWNA 81 (586)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 81 (586)
++-|...|-.+--++...|+++.+-+.|++.+..- -.....|+.+-..|..+|.-..|..+++.-.. |+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45678888888889999999999999999987653 34567888899999999999999999886543 33333333
Q ss_pred HHH-HHH-cCCChhHHHHHHHHHHHC--CCC--CChhhHHHHHHHHhcC----C-------ChHHHHHHHHHHHHhCCCC
Q 007878 82 YIS-NAV-LGGRPKNAIDAFINLRRT--GGE--PDLITFCAFLNACSDC----S-------LLQLGRQLHGFLVRSGFDG 144 (586)
Q Consensus 82 li~-~~~-~~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g~~~ 144 (586)
++. .|. +.+..+++++.-.+.... +.. .....|..+--+|... . ...++.+.++.+++.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 332 233 347778888777766551 111 1222333333333221 1 1345777888887776 22
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 007878 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGI----IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK-DFMISSVL 219 (586)
Q Consensus 145 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 219 (586)
|..+.-.+.--|+..++++.|.....+. ...+...|.-+.-.+...+++.+|+.+.+.....- |+ ......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhh
Confidence 3333333444577888999998887765 34578899999999999999999999988765431 11 00000000
Q ss_pred HHHhcccCcHHHHHHH-------H----------HHHH----hC-------CCCchhHHHHHHHHHHhcC---CHHHHHH
Q 007878 220 SACARIAGLELGRSVH-------A----------VAVK----AC-------VEGNIFVGSALVDMYGKCG---SIQDAEI 268 (586)
Q Consensus 220 ~~~~~~~~~~~a~~~~-------~----------~~~~----~~-------~~~~~~~~~~li~~~~~~g---~~~~A~~ 268 (586)
..-...++.+++.... + +... .| ....+.++..+.......+ ..+....
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 1111122222222211 1 1111 11 1111223322222211111 1111111
Q ss_pred HHhhCCCCCe------eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007878 269 AFNKMPERNL------VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 269 ~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
.+...+.|+. ..|......+.+.++.++|...+.+... +.| ....|......+...|..++|.+.|...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 2222222332 2455666778889999999988888766 334 3455666666778889999999999887
Q ss_pred HHhcCCCCC-hHHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 342 TLKYGIKPG-AEHYACVVDLLGRAGLVDRAYE--IIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 342 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
. .+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-+.|.-+.++++.+
T Consensus 711 l---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 711 L---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred H---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 5 56777 6788899999999998877777 88877 5555 67899999999999999999999999999998766
Q ss_pred ch
Q 007878 417 SG 418 (586)
Q Consensus 417 ~~ 418 (586)
|.
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 53
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-06 Score=77.85 Aligned_cols=383 Identities=8% Similarity=-0.015 Sum_probs=189.1
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHhc
Q 007878 48 GCSAFDMYSKTGLKDDADKMFDEMPER---NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA-FLNACSD 123 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 123 (586)
+++.+..+.+..++++|++++..-.++ +....+.|..+|-+..++..|...|+++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 334444444555555555555444332 3334444555555555566666666555432 233222221 1222334
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHH--HHHHhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChHHHHHHH
Q 007878 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLV--DFYGKCNEVGLAKVVFDGIID-KNDVSWCSMLVVYVQNYEEENGCQMF 200 (586)
Q Consensus 124 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (586)
.+.+..|..+...|... ++...-..-+ ......+++..+..+.++.+. .+..+.+.......+.|++++|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 44555555555444321 1111100011 112234555566666666552 34444444444455666666666666
Q ss_pred HHHHHC-CCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-------------c---------------hhHHH
Q 007878 201 LTARRE-GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG-------------N---------------IFVGS 251 (586)
Q Consensus 201 ~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~ 251 (586)
+...+- |..| ...|+..+ +..+.++.+.|.+...+++++|+.. | +..+|
T Consensus 168 qaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 665543 3333 33444333 3344556666666666666554321 1 11223
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007878 252 ALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
.-...+.+.|+++.|.+.+-.|+. .|++|...+.-.-. .+++.+..+-+.-+.. .. +-...||..++-.|+
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~--~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ--QN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh--cC-CCChHHHHHHHHHHh
Confidence 333346778999999999999984 46676655533222 3455555555555555 22 124678999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHh-cCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH-
Q 007878 327 RAGAVEKGMKIFYSMTLKYGI-KPGAEHYACVVDLLGR-AGLVDRAYEIIKEMPMRPTISVWGALLNA-CRVYGKPELG- 402 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~~ll~~-~~~~~~~~~a- 402 (586)
+..-++.|-.++.+-... .. -.+...|+ |++++.- .-..++|++-++.+.-.-....-...+.. -.++.+-+++
T Consensus 322 KNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999988887543211 00 11233343 3344333 34566666655544100000000111111 1122222222
Q ss_pred ---HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 403 ---RIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 403 ---~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..-+++.+++- ..+...-++.|.+..++..++++|+.-.+-
T Consensus 400 R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 400 RKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22233333322 123445567788889999999999876653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-06 Score=84.25 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=82.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007878 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
....+|.+|+.+++.++.+.. -..-|..+...|+..|+++.|.++|.+. ..++--|+||.+.|++++|.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 344455555555555544322 1223444445555555555555555322 12333455555555555555
Q ss_pred HHHhhCCCC--CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc
Q 007878 268 IAFNKMPER--NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY 345 (586)
Q Consensus 268 ~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 345 (586)
++-.+...| .++.|-+-..-+-++|++.+|.++|-.... |+. .|..|-+.|..+..+++...-..
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~------p~~-----aiqmydk~~~~ddmirlv~k~h~-- 878 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE------PDK-----AIQMYDKHGLDDDMIRLVEKHHG-- 878 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC------chH-----HHHHHHhhCcchHHHHHHHHhCh--
Confidence 555554432 223333333444455555555555543322 332 23344555555555544432211
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007878 346 GIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 346 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
..-..+...+..-|...|++..|.+.|-+.+ -|.+-++.|...+-+++|-
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~day 928 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAY 928 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHH
Confidence 1112233344444555555555555554442 2344444444444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.5e-08 Score=95.10 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=174.4
Q ss_pred hcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHH
Q 007878 223 ARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
.+.|++.+|.-.|+..++..+. +...|--|.......++-..|+..+.+..+ .|..+.-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 5678899999999999988876 788888888888888888888888888775 455677777778888998899999
Q ss_pred HHHHhhhccCCC------C--CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007878 300 SFEEMTSMRCEA------V--PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 300 ~~~~m~~~~~g~------~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 371 (586)
.++.-+. ... . ++..+-.. ..+.....+....++|-++....+.++|..++.+|.-.|--.|.+++|.
T Consensus 375 ~L~~Wi~--~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 375 MLDKWIR--NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHH--hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8887755 110 0 01000000 1223333455666777777666566688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 372 EIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 372 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+-|+.. .++| |...||-|...++...+.++|+..+.+++++.|.-..+.+.|+-.|...|.++||.+.|-....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999998 6777 5688999999999999999999999999999999999999999999999999999999887665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-06 Score=76.61 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=39.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007878 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
.+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++..+. +..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 34445555555555555555554432 112233444444444444444444444444444333 3334444444444444
Q ss_pred CHHHHHHHHhh
Q 007878 262 SIQDAEIAFNK 272 (586)
Q Consensus 262 ~~~~A~~~~~~ 272 (586)
++++|...|++
T Consensus 118 ~~~eA~q~F~~ 128 (250)
T COG3063 118 RPEEAMQQFER 128 (250)
T ss_pred ChHHHHHHHHH
Confidence 44444444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-06 Score=83.17 Aligned_cols=216 Identities=14% Similarity=0.095 Sum_probs=140.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe---e-------HHHHHH
Q 007878 216 SSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNL---V-------CWNAII 285 (586)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~-------~~~~li 285 (586)
..+.++..+..+++.+.+-+....... .++.-++....+|...|.+......-+...+..- . +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345566666677777777777777765 3666667777778887777766655544332111 1 122233
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhc
Q 007878 286 GGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRA 364 (586)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~ 364 (586)
.+|.+.++++.|+..|.+... .-..||..+ +....+++........ -+.|... -...-...+.+.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLt--e~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALT--EHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhh--hhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhc
Confidence 456667788888888887766 333343322 2233344444333321 2334321 111224567788
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 365 GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 365 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
|++..|+..+.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998888887 3334 5677888888888889999999888999999988888888888888888888888888887
Q ss_pred HHhCC
Q 007878 443 MKDVG 447 (586)
Q Consensus 443 m~~~g 447 (586)
..+..
T Consensus 452 ale~d 456 (539)
T KOG0548|consen 452 ALELD 456 (539)
T ss_pred HHhcC
Confidence 76643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-05 Score=80.81 Aligned_cols=257 Identities=13% Similarity=-0.040 Sum_probs=137.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc----ccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHH
Q 007878 185 VVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACAR----IAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYG 258 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 258 (586)
..+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.+.. .....| .......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 3445667777777777766654 2332 22221 111222 2333444443333 111122 2333444556677
Q ss_pred hcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCHHH
Q 007878 259 KCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 333 (586)
..|++++|.+.+++..+ .+...+..+...|...|++++|...+++....... .|+. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHCCCHHH
Confidence 77788888777777653 34456666777777778888888887777652111 1222 234456667777788888
Q ss_pred HHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007878 334 GMKIFYSMTLKYGIKPGAEHY-A--CVVDLLGRAGLVDRAYEI---IKE---M-PMRPTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
|..+++.........+..... + .++..+...|....+.+. ... . +.............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 888887764221111111111 1 223333334432222222 111 1 11111122224555567788888888
Q ss_pred HHHHHHhccCC---------CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 404 IAADNLFKLDP---------NDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 404 ~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..++.+....- .........+.++...|++++|.+.+......+
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88877765321 123445566777889999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-05 Score=77.84 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=226.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007878 86 AVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 165 (586)
+...|+-++|....+.-....++ +.+.|..+.-.+....++++|.+.+..+...+ +.|...+.-|.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 45568889999988877665444 66677777766777789999999999999886 55677777666666677777766
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHH------HHhcccCcHHHHHHH
Q 007878 166 KVVFDGII---DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VEPKDFMISSVLS------ACARIAGLELGRSVH 235 (586)
Q Consensus 166 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~ 235 (586)
...-.... ......|...+.++.-.|+...|..++++..+.. -.|+...+.-... .....|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 55544442 2356789999999999999999999999987764 2466655544332 234566777776666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHH-HHHhcCCHHHHH-HHHHHhhhccCCC
Q 007878 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIG-GYAHQGHADMAL-SSFEEMTSMRCEA 311 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~g~ 311 (586)
......- ......-..-.+.+.+.+++++|..++..+.. ||...|.-... ++.+-.+.-+++ .+|....+ .
T Consensus 209 ~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~----~ 283 (700)
T KOG1156|consen 209 LDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE----K 283 (700)
T ss_pred HhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----c
Confidence 5443321 11333444567788899999999999999875 66666655444 343333333444 56665544 1
Q ss_pred CCCHHHHHHH-HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH----HHHHHHhC-C-------
Q 007878 312 VPNYVTLVCV-LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR----AYEIIKEM-P------- 378 (586)
Q Consensus 312 ~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------- 378 (586)
.|-...-..+ ++........+..-.++....++ |+++ ++..+...|-.-...+- +..+...+ +
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 2221111111 11112222233334444555443 6654 23333333322221111 12222222 1
Q ss_pred -----CCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 379 -----MRPTISVWGA--LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 379 -----~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
..|....|.. +...+-..|+++.|....+.++...|.-+..|..-+.++...|..++|...+++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 2466666665 455588899999999999999999999888999999999999999999999999987553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-05 Score=74.29 Aligned_cols=249 Identities=10% Similarity=0.052 Sum_probs=141.5
Q ss_pred HHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007878 188 VQNYEEENGCQMFLTARREG-VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 266 (586)
+-.++...|...+-.+.... ++-|......+...+...|+.+++...|+.....++. ++.......-.+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 33455555555554444332 4445666677777777778888877777776654322 111111122234456666666
Q ss_pred HHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 267 EIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 267 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
..+-..+-. .....|-.-........+++.|+.+-++.++ +.|+ ...|..=..++...|++++|.-.|+...
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 555554432 2333444444445556677777777777666 2232 3344444455667777777777777764
Q ss_pred HhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHhccCCCCc
Q 007878 343 LKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALL-NACR-VYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 343 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+.| +...|..|+..|...|++.||.-.-+.. .+..+..+...+. ..|. ...--|.|..++++.+.++|.-.
T Consensus 362 ---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 362 ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred ---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 3443 4677777777777777777766544332 1112223332221 1111 11223567777777777777776
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 418 GNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+.+.++..+...|+.+++..++++-.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 777777777777777777777776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-07 Score=87.19 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh-HHHHHHHHH
Q 007878 366 LVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW-EEADLVRKE 442 (586)
Q Consensus 366 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 442 (586)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|..++.++.+.+|.++.+...++.+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 344555555554 22244455555555555555666666665665555566555555555555555555 445555555
Q ss_pred HHh
Q 007878 443 MKD 445 (586)
Q Consensus 443 m~~ 445 (586)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-07 Score=85.75 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc-
Q 007878 249 VGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR- 327 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~- 327 (586)
+.-....+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+ . ..| .+...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~--~eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--I--DED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--C--SCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--c--CCc-HHHHHHHHHHHHH
Confidence 3333445667788888888888775 4556666678888899999999999999877 3 234 344445544432
Q ss_pred ---cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HH
Q 007878 328 ---AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKP-EL 401 (586)
Q Consensus 328 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~-~~ 401 (586)
...+++|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| |..+...++......|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 3468899999999865 44677888888888999999999999998886 3333 455666777777777877 67
Q ss_pred HHHHHHHHhccCCCCc
Q 007878 402 GRIAADNLFKLDPNDS 417 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~ 417 (586)
+.+...++....|+.+
T Consensus 255 ~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 7888888888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-05 Score=80.22 Aligned_cols=365 Identities=14% Similarity=0.138 Sum_probs=213.7
Q ss_pred HHHHHHHHHhCCC--CChhhhHHHHHHHHhcCCchHHHHHhccCC-CCCccc-----HHHHHHHHHcCCChhHHHHHHHH
Q 007878 30 KQLHALALKSGQI--HDVFVGCSAFDMYSKTGLKDDADKMFDEMP-ERNLAT-----WNAYISNAVLGGRPKNAIDAFIN 101 (586)
Q Consensus 30 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~ 101 (586)
+++.++.++.+++ .|+.-.+..+.++...+-..+-+++++++. ++++++ -|.||-...+. +.....+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 4556666666553 355666677788888888888888888764 344443 23344333333 44556666666
Q ss_pred HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHH
Q 007878 102 LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWC 181 (586)
Q Consensus 102 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 181 (586)
+-... .|+ +...+...+-+++|..+|+.. ..+....+.|+. .-+.++.|.+.-++..+ +..|.
T Consensus 1046 LdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWs 1108 (1666)
T KOG0985|consen 1046 LDNYD-APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWS 1108 (1666)
T ss_pred hccCC-chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHH
Confidence 54332 122 233344555667777777653 344555555554 34667777777776655 45699
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007878 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++..+.+..-+|.+ -+.||-+|++.+
T Consensus 1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhc
Confidence 9999999999999998877322 36678999999999999999999888888777666554 457888999999
Q ss_pred CHHHHHHHHhhCCCCCee--------------------------HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007878 262 SIQDAEIAFNKMPERNLV--------------------------CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 262 ~~~~A~~~~~~m~~~~~~--------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
++.+-+++... ||+. -|..+...+...|++..|.+.-++. .+.
T Consensus 1181 rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--------ns~ 1249 (1666)
T KOG0985|consen 1181 RLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--------NST 1249 (1666)
T ss_pred hHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--------cch
Confidence 98887766542 3333 3444444444455554444433322 134
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 393 (586)
.||..+-.+|...+.+..|. |.. .++.....-..-|+.-|-..|.+++-+.+++.. +++ .....|+-|.-.|
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 45555555555554443331 211 122223444555666677777777777666654 433 2334455444444
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
.+. +++...+.++.....- ..--++.++.++..|.|..-++.+-
T Consensus 1324 sky-kp~km~EHl~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred Hhc-CHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 2343333333332210 0112445555666666666555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.9e-06 Score=81.86 Aligned_cols=258 Identities=16% Similarity=0.157 Sum_probs=184.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHH
Q 007878 153 VDFYGKCNEVGLAKVVFDGIIDKNDV--SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLEL 230 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 230 (586)
+.+-....++.+|..+++.+..+++. -|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|.|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34445667788888888888776554 36777889999999999999995432 35567888999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 007878 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE 310 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g 310 (586)
|.++-.+. .|++..+..|-+-..-+-+.|++.+|+++|-.+..|+. -|..|-++|..+..+++..+-.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 98876443 56666777787777788899999999999999988875 4778999999999998887642
Q ss_pred CCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007878 311 AVPN--YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGA 388 (586)
Q Consensus 311 ~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 388 (586)
|| ..|...+..-+-..|+++.|...|-+.. -|.+-+++|-..+.+++|.++-+.-+- .|..--..
T Consensus 878 --~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~ 944 (1636)
T KOG3616|consen 878 --GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVA 944 (1636)
T ss_pred --hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHH
Confidence 33 3566677778888999999999887652 356678899999999999988876532 23333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHH------hcc------------------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 389 LLNACRVYGKPELGRIAADNL------FKL------------------DPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~------~~~------------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+.+-..-| +.|.+++.+. ... ...-+..+.-++..+...|++++|-+-+-+..
T Consensus 945 flwaksigg--daavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 945 FLWAKSIGG--DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHHhhCc--HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 333322223 4455555542 110 11123455666777788899999977766655
Q ss_pred hC
Q 007878 445 DV 446 (586)
Q Consensus 445 ~~ 446 (586)
+.
T Consensus 1023 kl 1024 (1636)
T KOG3616|consen 1023 KL 1024 (1636)
T ss_pred hc
Confidence 43
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-05 Score=76.37 Aligned_cols=195 Identities=9% Similarity=-0.098 Sum_probs=100.9
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH---H
Q 007878 78 TWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITFC-AFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNG---L 152 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l 152 (586)
.|..+...+...|+.+.+...+.+...... .++..... .....+...|+++++.+.++...+.. +.+...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444555555666666555555433211 12221111 11223445577777777777766653 333333331 1
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007878 153 VDFYGKCNEVGLAKVVFDGIIDKND---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
.......+..+.+.+.++.....+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 1112223444555555544222222 223344456677777777777777776643 223445555666666777777
Q ss_pred HHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007878 230 LGRSVHAVAVKACVE-GNI--FVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
+|...+....+.... ++. ..+..+...+...|++++|..+|++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 777777666654321 222 233456666777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-06 Score=93.99 Aligned_cols=209 Identities=14% Similarity=0.179 Sum_probs=172.1
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 235 HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--------RNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
|.+.+...+. ....|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 3444444433 455677778888899999999999998764 2345788888888888888899999999987
Q ss_pred ccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC
Q 007878 307 MRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT 382 (586)
Q Consensus 307 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~ 382 (586)
. --....|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.+. |-+-.
T Consensus 1526 --y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1526 --Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred --h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 2 22346688999999999999999999999999876 56778999999999999999999999886 32223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007878 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
.....-.+..-.++|+.+.+..+|+..+...|.....|..++.+-.+.|..+.++.+|++....++.+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 44555556666789999999999999999999999999999999999999999999999999987754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-05 Score=88.87 Aligned_cols=326 Identities=12% Similarity=0.009 Sum_probs=204.6
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCC---h---h--hHHHHHHHHHH
Q 007878 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII----DKN---D---V--SWCSMLVVYVQ 189 (586)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~---~---~--~~~~li~~~~~ 189 (586)
...|+++.+...+..+.......+..........+...|++++|...++... ..+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3446666666665544211111223333445556678899999888876542 111 1 1 11223345668
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhcccCcHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhc
Q 007878 190 NYEEENGCQMFLTARREGVEPKD----FMISSVLSACARIAGLELGRSVHAVAVKACV-----EGNIFVGSALVDMYGKC 260 (586)
Q Consensus 190 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~ 260 (586)
.|++++|...+++....--..+. ...+.+...+...|+++.|...+.+.....- .........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 99999999999987763111122 2334455566778999999999888765311 11223455667788889
Q ss_pred CCHHHHHHHHhhCCC-------CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHhhc
Q 007878 261 GSIQDAEIAFNKMPE-------RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTLVCVLSACSR 327 (586)
Q Consensus 261 g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~~~ll~a~~~ 327 (586)
|++++|...+++... ++ ...+..+...+...|++++|...+.+.........|. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 11 1234445556777899999999998876521122222 3344456667788
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHc
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPGAEHY-----ACVVDLLGRAGLVDRAYEIIKEMPMR--PTI----SVWGALLNACRVY 396 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 396 (586)
.|+.++|...+...............+ ...+..+...|+.+.|.+++...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875321111111111 11224456689999999998776211 111 1234566678889
Q ss_pred CCHHHHHHHHHHHhccC------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 397 GKPELGRIAADNLFKLD------PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
|+.++|...++++.... +....+...++.+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988752 1223467788889999999999999999988744
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00017 Score=71.82 Aligned_cols=336 Identities=13% Similarity=0.042 Sum_probs=186.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHH--HHh
Q 007878 83 ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNG--LVDF--YGK 158 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--ll~~--~~~ 158 (586)
++-+.+.|++++|+....++...+ +-|...+..=+-++.+.+.+++|..+.+. .+ -..+++. +=.+ ..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 345566788888888888887754 22344455555567777778877754432 11 1111222 2233 347
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007878 159 CNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEP-KDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
.+..++|...++.....+..+...-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-... .+ ..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HH
Confidence 7888888888885555554455556677788899999999999887765332 111222222221110 11 01
Q ss_pred HHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHhhCC--------CCCe----------eHHHHHHHHHHhcCCHHH
Q 007878 238 AVKACVEGNIFVGSAL---VDMYGKCGSIQDAEIAFNKMP--------ERNL----------VCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--------~~~~----------~~~~~li~~~~~~g~~~~ 296 (586)
+......| ..+|..+ .-.+...|++.+|+++++... +.|. ..--.|.-.+...|+..+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11122222 2233333 334567889999999888761 1111 112234445677899999
Q ss_pred HHHHHHHhhhccCCCCCCHHH----HHHHHHHhhccCCHH--HHHHHHHHhHHhc------CC--CCChHHH--HHHHHH
Q 007878 297 ALSSFEEMTSMRCEAVPNYVT----LVCVLSACSRAGAVE--KGMKIFYSMTLKY------GI--KPGAEHY--ACVVDL 360 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t----~~~ll~a~~~~g~~~--~a~~~~~~~~~~~------~~--~p~~~~~--~~li~~ 360 (586)
|.+++...++ .. .+|... -|.|+ +...-.++- .++..++...... .+ .--...+ ++++.+
T Consensus 243 a~~iy~~~i~--~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 243 ASSIYVDIIK--RN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHH--hc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 32 345422 22332 222222211 1222222221100 00 0001122 233333
Q ss_pred HHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHH-c-CCHHHHHHHHHHHhccCCCC-chhHHHHHHHHhhcCChHHH
Q 007878 361 LGRAGLVDRAYEIIKEMPMR-PTISVWGALLNACRV-Y-GKPELGRIAADNLFKLDPND-SGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a 436 (586)
| .+..+.+.++-...+.. |. ..+..++..+.+ . .....+..++....+..|.+ ..+...++......|+|+.|
T Consensus 319 ~--tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred H--hhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 56667778887777443 44 445555554322 2 24677888888888888876 44555677888999999999
Q ss_pred HHHHH
Q 007878 437 DLVRK 441 (586)
Q Consensus 437 ~~~~~ 441 (586)
.+++.
T Consensus 396 ~~il~ 400 (652)
T KOG2376|consen 396 LEILS 400 (652)
T ss_pred HHHHH
Confidence 99999
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-08 Score=59.13 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=25.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007878 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777788888888888888888888877774
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-06 Score=75.98 Aligned_cols=303 Identities=15% Similarity=0.060 Sum_probs=156.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHH-HHHHHHHc
Q 007878 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--KNDVSWCS-MLVVYVQN 190 (586)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 190 (586)
+++++..+.+..++..+.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555444442 22444455555666666666666666655532 22222211 12344556
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007878 191 YEEENGCQMFLTARREGVEPKDFMISSVLSA--CARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEI 268 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 268 (586)
+.+.+|+.+...|.+. |+...-..-+.+ ..+.+++..++.+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6667777776666542 222111111111 233455555555555443222 22333333334456677777777
Q ss_pred HHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007878 269 AFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 269 ~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
-|+...+ ....+||.-+. ..+.|+.+.|++...++++ .|++-.+.. ..|...++..+ +.+
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIie--RG~r~HPEl---------gIGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIE--RGIRQHPEL---------GIGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHH--hhhhcCCcc---------CccceeccCch-hcc---
Confidence 7766554 34455554433 3345667777777777666 333211100 00000000000 000
Q ss_pred cCCCCChHHHHHHH-------HHHHhcCChHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007878 345 YGIKPGAEHYACVV-------DLLGRAGLVDRAYEIIKEMPMR----PTISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 345 ~~~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
| .|-.-+-+.++ ..+.+.|+++.|.+-+..||-+ .|++|...+.-. -..+++..+..-+.-+++++
T Consensus 230 -g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 -G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 0 01111222333 3456788888888888888432 466666554332 23455666777777778888
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 414 PNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 414 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
|-.+.++..+.-+|++..-++-|..++-+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 87788888888888888888888777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00011 Score=77.21 Aligned_cols=381 Identities=13% Similarity=0.093 Sum_probs=246.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhH
Q 007878 15 CLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 94 (586)
-+..-+-+.+++..-...++..++.| ..|+.++|+|...|...++-.+ +++.+ |..--+..+.-||..+++.-
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~l 915 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHL 915 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCce
Confidence 34455566777777788888888888 5789999999999987764332 22222 11111222334555544444
Q ss_pred HHHHHHHHHHC----CCCCChhhHHHHHHHHhcCCChHH-----------HHHHHHHHHHhCCC--CChhHHHHHHHHHH
Q 007878 95 AIDAFINLRRT----GGEPDLITFCAFLNACSDCSLLQL-----------GRQLHGFLVRSGFD--GNVSVCNGLVDFYG 157 (586)
Q Consensus 95 A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~g~~--~~~~~~~~ll~~~~ 157 (586)
|.-.|++=... .+--....|....+-+....+.+. -+++.++.++.+++ .|+.-.+.-+.++.
T Consensus 916 A~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 916 ACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred EEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 33333221000 001111223333333333333222 33556666666543 34556667788888
Q ss_pred hcCChHHHHHHHhcCC-CCChhh-----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHH
Q 007878 158 KCNEVGLAKVVFDGII-DKNDVS-----WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG 231 (586)
Q Consensus 158 ~~g~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 231 (586)
..+-..+-.++++++. ++++.+ -|.||-. +-.-+....++..+++-.-. .|+ +...+...+-+++|
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEA 1067 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHH
Confidence 8888888888888874 333332 2233332 33345566777776665432 222 23345556677888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 007878 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEA 311 (586)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~ 311 (586)
..+|... ..+....+.||+ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1068 F~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------- 1130 (1666)
T KOG0985|consen 1068 FAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------- 1130 (1666)
T ss_pred HHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-------
Confidence 8888654 234555555554 467889999888888765 57999999999999999999988553
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 007878 312 VPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLN 391 (586)
Q Consensus 312 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 391 (586)
-|+..|.-++..+.+.|.+++-.+++....++ .-.|.+. +.||-+|++.+++.+-++++. -||..-...+..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 36778999999999999999999999888665 5566544 578999999999999887764 477777788888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
-|...+.++.|.-++... +.|..|+..+...|.+..|...-++.
T Consensus 1203 rcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 899999998888887653 55667777777777777666554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00013 Score=82.69 Aligned_cols=361 Identities=11% Similarity=-0.043 Sum_probs=217.1
Q ss_pred HHhcCCchHHHHHhccCCCCCccc--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 007878 55 YSKTGLKDDADKMFDEMPERNLAT--WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQ 132 (586)
Q Consensus 55 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 132 (586)
+...|++.+|..........+... .......+...|++..+...++.+.......+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 444455555555444443322111 011112344567777766666655221111122222333444567789999999
Q ss_pred HHHHHHHhCC------CCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCh----hhHHHHHHHHHHcCChHHH
Q 007878 133 LHGFLVRSGF------DGN--VSVCNGLVDFYGKCNEVGLAKVVFDGIID----KND----VSWCSMLVVYVQNYEEENG 196 (586)
Q Consensus 133 ~~~~~~~~g~------~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A 196 (586)
.+..+.+.-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8887754311 111 12223344566789999999998876532 222 2445666778889999999
Q ss_pred HHHHHHHHHCCC---CC--CHhHHHHHHHHHhcccCcHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHH
Q 007878 197 CQMFLTARREGV---EP--KDFMISSVLSACARIAGLELGRSVHAVAVKA----CVE--G-NIFVGSALVDMYGKCGSIQ 264 (586)
Q Consensus 197 ~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~ 264 (586)
...+.+.....- .+ ...++..+...+...|+++.|...+.+.... +.. + ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999988764311 11 1234445566778899999999998877652 221 1 2334555666777889999
Q ss_pred HHHHHHhhCCC------C--CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHH--HHHHHHhhccCCHH
Q 007878 265 DAEIAFNKMPE------R--NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTL--VCVLSACSRAGAVE 332 (586)
Q Consensus 265 ~A~~~~~~m~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~--~~ll~a~~~~g~~~ 332 (586)
+|...+++... + ....+..+...+...|+.++|.+.+.+.........+. .... ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99998887642 1 12334445567788999999999998875411111111 1010 11224445688999
Q ss_pred HHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007878 333 KGMKIFYSMTLKYGIKPG---AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPT-ISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~ 401 (586)
.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++
T Consensus 671 ~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 671 AAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998776431 11111 111345677788999999999998876 21221 2355666677899999999
Q ss_pred HHHHHHHHhccCCCC
Q 007878 402 GRIAADNLFKLDPND 416 (586)
Q Consensus 402 a~~~~~~~~~~~p~~ 416 (586)
|...+.+++++....
T Consensus 750 A~~~L~~Al~la~~~ 764 (903)
T PRK04841 750 AQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999986443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00018 Score=70.93 Aligned_cols=394 Identities=13% Similarity=0.015 Sum_probs=244.2
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CC-cccHHHHHHHHHcCCChhHH
Q 007878 19 ASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RN-LATWNAYISNAVLGGRPKNA 95 (586)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 95 (586)
+....|+++.|...|...+... +++...|+.-..+|++.|++++|++==.+-.+ |+ ...|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3456799999999999999876 56888999999999999999998765444332 33 34688888888889999999
Q ss_pred HHHHHHHHHCCCCC-ChhhHHHHHHHHhcC---CChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHH----------h
Q 007878 96 IDAFINLRRTGGEP-DLITFCAFLNACSDC---SLLQLGRQLHGFLVRSG---FDGNVSVCNGLVDFYG----------K 158 (586)
Q Consensus 96 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~----------~ 158 (586)
+.-|.+=++. .| |...++.+..+.... ++.-..-.++....... .......|..++..+- .
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999987764 34 344556666655111 00000001111111000 0000112222222221 1
Q ss_pred cCChHHHHHHHhcC----------------CCC------------C----------hhhHHHHHHHHHHcCChHHHHHHH
Q 007878 159 CNEVGLAKVVFDGI----------------IDK------------N----------DVSWCSMLVVYVQNYEEENGCQMF 200 (586)
Q Consensus 159 ~g~~~~A~~~~~~~----------------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~ 200 (586)
-.++..|...+... .+| | ..-.-.+.++..+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11222232222111 111 0 012344666777788888898888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHH-------HHHHHHHHhcCCHHHHHHHHhhC
Q 007878 201 LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG-------SALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 201 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~~m 273 (586)
....... -+..-++....++...|........-...++.|-. ...-| ..+..+|.+.++++.|...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 8877643 33333445556677777777776666665555433 11122 22445778888999999999885
Q ss_pred CCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH
Q 007878 274 PERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE 352 (586)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 352 (586)
..+... -....+....++++.......- +.|+. .-...-...+.+.|++..|+..|.+++++ -+-|..
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~----~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~ 393 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAY----INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDAR 393 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHh----hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhH
Confidence 431111 1112223345555555555433 34553 12223366788999999999999999865 244688
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA 429 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (586)
.|+...-+|.+.|.+.+|++-.+.. ...|+ ...|.--..++....+++.|...|.+.++.+|.+......+...+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999998876665 44554 34555556667777899999999999999999987766666555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=9e-08 Score=57.97 Aligned_cols=32 Identities=38% Similarity=0.665 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 346 GIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 346 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67788888888888888888888888888777
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-05 Score=81.72 Aligned_cols=383 Identities=12% Similarity=-0.028 Sum_probs=225.0
Q ss_pred CCCCC-hhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCChhhH
Q 007878 40 GQIHD-VFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITF 114 (586)
Q Consensus 40 g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~ 114 (586)
.+.++ ...|..|...|....+...|.+-|+..-+ -|..++-.....|++..+++.|+.+.-.--+... ..-...|
T Consensus 486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 33444 35788899999888888899999987655 4667888999999999999999998332222110 0011122
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH---HHHHHHHcC
Q 007878 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCS---MLVVYVQNY 191 (586)
Q Consensus 115 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g 191 (586)
...--.+-..++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 223334567788888998888888775 5578899999999999999999999998876655544432 223346789
Q ss_pred ChHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHhcccCcHHHHHHHH-------HHHHhCCCCchhHHHHHHHHHH
Q 007878 192 EEENGCQMFLTARREG------VEPKDFMISSVLSACARIAGLELGRSVHA-------VAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 192 ~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.+.+|+..+....... ..--..++..+...+...|-...+..+++ -........+...+-.+
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----- 719 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----- 719 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----
Confidence 9999999887775421 11111222222222222332233333332 22222222222222222
Q ss_pred hcCCHHHHHHHHhhCCCCCee--HHHHHHHH-HHhcCCH---H---HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc--
Q 007878 259 KCGSIQDAEIAFNKMPERNLV--CWNAIIGG-YAHQGHA---D---MALSSFEEMTSMRCEAVPNYVTLVCVLSACSR-- 327 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~-- 327 (586)
.+|..+|-... |+.+ .+..++.. +-..+.. | -+.+.+-.-++ ...+..+|..++..|.+
T Consensus 720 -----sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls----l~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 720 -----SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS----LAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred -----hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH----HhhccchHHHHhHHHHHHH
Confidence 23334444443 3321 11111111 1111111 1 11111111111 11233444444333322
Q ss_pred --c---C-CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC
Q 007878 328 --A---G-AVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGK 398 (586)
Q Consensus 328 --~---g-~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~ 398 (586)
. + +...|+..+...++ ...+ ...|+.|. .+...|.+.-|.--|-+. ..+....+|..+...|.+..+
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~---L~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVS---LCANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHH---HhhccHHHHHHHH-HhhccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 1 2 23466777766653 2333 44555544 446667777666655444 223466788888888889999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 399 PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
++.|...|.....++|.+...+...+......|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888777777788888888887776
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00012 Score=67.86 Aligned_cols=306 Identities=10% Similarity=0.020 Sum_probs=149.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHH
Q 007878 81 AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAF---LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVC-NGLVDFY 156 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~ 156 (586)
-+-..+...|++..|+.-|....+- |+..|.++ ...|...|+...|..-+..+++. .||-..- ---...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3445555666666666666665542 22223322 22355556655666656555554 3442211 1112234
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHH
Q 007878 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 236 (586)
.+.|.++.|..=|+.+.+.++.- +....++.+.-..++- ......+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHH
Confidence 55566666665555543322110 0000111110000111 112223334455666667777776
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC
Q 007878 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP 313 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p 313 (586)
.+++..+ .|...+..-..+|...|++..|+.-+.... ..+....--+-..+..-|+.+.++...++-.+ +.|
T Consensus 180 ~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldp 254 (504)
T KOG0624|consen 180 HLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDP 254 (504)
T ss_pred HHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCc
Confidence 6666543 366677777777777777777766555443 35555555566666777777777777777766 346
Q ss_pred CHHH-HH---HH---------HHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHH
Q 007878 314 NYVT-LV---CV---------LSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACVVDLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 314 d~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~ 375 (586)
|... |. .+ +......+.+.++++-.+...+. .|. ...+..+-.++...|++.+|++...
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 6422 11 11 01122334444444444444322 232 1122233344444555555555555
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 376 EM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 376 ~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
+. .+.|| +.++---..+|.....++.|+.-++++.+.++++.
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 44 33443 44444444555555555666666666665555543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.2e-06 Score=77.07 Aligned_cols=179 Identities=9% Similarity=-0.016 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe----eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY---- 315 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~---- 315 (586)
....+..+...|.+.|++++|...|+++.+ |+. .+|..+..+|.+.|++++|...++++.+. .|+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----HPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCCchH
Confidence 455667777888889999999998887754 332 35677788888899999999999998872 2432
Q ss_pred HHHHHHHHHhhcc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 007878 316 VTLVCVLSACSRA--------GAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVW 386 (586)
Q Consensus 316 ~t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 386 (586)
.++..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHH
Confidence 2444555555544 6788888888888754 44432 22222111 1011100 0011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 387 GALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+...+...|+++.|...++++.+..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 245566888999999999999999987654 468889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00023 Score=66.12 Aligned_cols=356 Identities=10% Similarity=0.028 Sum_probs=227.4
Q ss_pred hhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHH---HHHHcCCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHH
Q 007878 46 FVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYI---SNAVLGGRPKNAIDAFINLRRTGGEPDLITFC-AFLNAC 121 (586)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~ 121 (586)
.-.--|...+...|++.+|+.-|....+-|+..|-++. ..|...|+-..|+.=+.+.++ ++||-..-. .--..+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 33345667777889999999999999888888888876 468888999999999999887 688854322 122346
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 007878 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFL 201 (586)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (586)
.+.|.++.|..-|+.+++.. |+..+ ...++.+.-..++-..+ ...+..+.-.|+...|+....
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHH
Confidence 78899999999999999874 32211 12222222222221111 223445566777777777777
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee
Q 007878 202 TARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLV 279 (586)
Q Consensus 202 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~ 279 (586)
.+.+-. +-|...+..-..+|...|.+..|..=+....+..-. ++...--+-..+...|+.+.++...++..+ ||.-
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 777632 235555666666777777777777666666555433 444444556667777777777777776654 3322
Q ss_pred ----HHHHH---------HHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHH---HHHHHHHhhccCCHHHHHHHHHHh
Q 007878 280 ----CWNAI---------IGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVT---LVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 280 ----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t---~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
.|..+ +......+++.++++-.+...+ .. |. .++ +..+-.++...|.+.+|++...++
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cC--CcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 11111 1234567888889888888877 32 43 233 344556777889999999999988
Q ss_pred HHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007878 342 TLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 342 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
. .+.|| +.++.--.++|.-...+++|+.-|+.. ...++.. ...++++-.+++.+.... ...
T Consensus 334 L---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-------------~~reGle~Akrlkkqs~k-RDY 396 (504)
T KOG0624|consen 334 L---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-------------RAREGLERAKRLKKQSGK-RDY 396 (504)
T ss_pred H---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-------------HHHHHHHHHHHHHHHhcc-chH
Confidence 6 56776 888888889999999999999999887 3333321 223334444444433211 123
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 420 HVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|-.|+ -.+...-.+-.+.+++|..
T Consensus 397 YKILG--VkRnAsKqEI~KAYRKlAq 420 (504)
T KOG0624|consen 397 YKILG--VKRNASKQEITKAYRKLAQ 420 (504)
T ss_pred HHHhh--hcccccHHHHHHHHHHHHH
Confidence 44443 2344455666677777754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00092 Score=69.09 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=44.0
Q ss_pred CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHh
Q 007878 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAH 290 (586)
Q Consensus 211 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 290 (586)
|...|..-..-+-..|+.+.|..+|..+.. |-+++...|-.|+.++|-++-++- .|..+...+...|-.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYEN 979 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhh
Confidence 333444444444556666666666655433 233444455556666665555442 234444445555555
Q ss_pred cCCHHHHHHHHHHhh
Q 007878 291 QGHADMALSSFEEMT 305 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~ 305 (586)
.|++.+|..+|.+.+
T Consensus 980 ~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566666665555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0002 Score=75.49 Aligned_cols=421 Identities=11% Similarity=-0.014 Sum_probs=232.4
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCC---cccHHHHH--HHH
Q 007878 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERN---LATWNAYI--SNA 86 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li--~~~ 86 (586)
.|+.+-..|....+...|+..|+...+.. ..+...+....+.|++..+++.|..+.-...+.+ ...||.+- -.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 35555555555556667777777776654 4566778889999999999999988743333221 11233322 235
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 007878 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAK 166 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 166 (586)
.+.++...|+.-|+...+..++ |...|..+..+|...|++..|.++|..+.... +.+.+.---..-+-+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5667777777777776654332 55567777777777777777777776665542 112222222333445566677766
Q ss_pred HHHhcCCCC----------ChhhHHHHHHHHHHcCChHHHHHHHHHH-------HHCCCCCCHhHHHHHHHH--------
Q 007878 167 VVFDGIIDK----------NDVSWCSMLVVYVQNYEEENGCQMFLTA-------RREGVEPKDFMISSVLSA-------- 221 (586)
Q Consensus 167 ~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~t~~~ll~~-------- 221 (586)
..+..+... -..++-.+...+.-.|-..+|..+|++- .......+...|-.+-.+
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 666554211 0112222222222222222222222221 111111111111111111
Q ss_pred ---------------HhcccCc---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC----CHHHHHHHHhh
Q 007878 222 ---------------CARIAGL---E---LGRSVHAVAVKACVEGNIFVGSALVDMYGK----CG----SIQDAEIAFNK 272 (586)
Q Consensus 222 ---------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~ 272 (586)
.-..+.. + .|-+.+-.- ..+..+...+..|+.-|.+ +| +...|...+..
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 1122221 1 011111000 1111122333333333322 22 22355666655
Q ss_pred CCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC
Q 007878 273 MPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP 349 (586)
Q Consensus 273 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 349 (586)
..+ .+...||.|.-. ...|++.-|...|-+-.. . .+-...+|..+.-.|....+++.|...|.... .+.|
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP 881 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--S-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDP 881 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--c-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCc
Confidence 442 667788876554 555677777666655544 1 22356778888778888999999999998885 4566
Q ss_pred C-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHhc
Q 007878 350 G-AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPTISVWGALLNACRVYGKPELGRI----------AADNLFK 411 (586)
Q Consensus 350 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~----------~~~~~~~ 411 (586)
+ ...|-.........|+.-++..+|..- +--|+..-|.+...-...+|+.++-+. ..++...
T Consensus 882 ~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~ 961 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL 961 (1238)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh
Confidence 4 455554444455678888888888762 223566566555555566666665443 3444455
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 412 LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
..|+...+|...+....+.+.+.+|.+...+..
T Consensus 962 ~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 962 GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 679999999999998888898888888776653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.5e-06 Score=80.97 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=154.8
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHH
Q 007878 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGC 197 (586)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 197 (586)
+.+.|++.+|.-.|+..++.. +.+...|-.|.......++-..|+..+.+..+- |....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346788999999999888885 557788888888888888888888888877553 4556666777888899999999
Q ss_pred HHHHHHHHCCCC--------CCHhHHHHHHHHHhcccCcHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007878 198 QMFLTARREGVE--------PKDFMISSVLSACARIAGLELGRSVHAVAVK-ACVEGNIFVGSALVDMYGKCGSIQDAEI 268 (586)
Q Consensus 198 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 268 (586)
..|+.-.....+ ++..+-.. ..+.....+....++|-++.. .+..+|..++..|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988887653210 01000000 111222233444555544444 4445788888888888989999999999
Q ss_pred HHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 269 AFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 269 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
.|+.... .|...||-|...++...+.++|+..|++.++ ++|+. ...-.|.-+|...|.+++|...|-.++
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9988764 4668899999999999999999999999987 66773 334455667889999999988886654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.2e-06 Score=69.59 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=84.1
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 299 ~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++.
T Consensus 14 ~~~~~al~----~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLS----VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHH----cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555554 33543 44556677778888888888877763 344 4667777777788888888888888776
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007878 378 -PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 378 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
...| +...|..+..++...|+.++|+..++++++..|+++..+.....+.
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3333 5667777777788888888888888888888888877776665544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-05 Score=70.84 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHH
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC-RVYGK--PELG 402 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~~~--~~~a 402 (586)
.++.+++...++...+. -+.+...|..|...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777766543 2445778888888888888888888888887 4445 556666666664 56666 5899
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 403 RIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.3e-05 Score=71.49 Aligned_cols=210 Identities=12% Similarity=0.017 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCH--HHHHHHH
Q 007878 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG-SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHA--DMALSSF 301 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~~~ 301 (586)
.+.|..+...+++..+. +..+++.....+.+.| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.++
T Consensus 53 serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 33444444444443322 2233333333333444 34555555555442 3334455443334444432 4556666
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc---CC----hHHHHHHH
Q 007878 302 EEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA---GL----VDRAYEII 374 (586)
Q Consensus 302 ~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~ 374 (586)
+++.+ .. +-|..+|.....++.+.|+++++++.++.+++. . .-+...|+.....+.+. |. .++++++.
T Consensus 132 ~kal~--~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 132 RKILS--LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHH--hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 66665 21 114555665556666666666677666666543 1 22234444444333333 22 23556665
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-----------------
Q 007878 375 KEM-PMRP-TISVWGALLNACRVY----GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG----------------- 431 (586)
Q Consensus 375 ~~m-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 431 (586)
.++ ...| |...|+-+...+... ++..+|...+.++.+.+|.++.+...|+.+|+...
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 444 3344 567788888777763 34567888888888888998889999999998632
Q ss_pred -ChHHHHHHHHHH
Q 007878 432 -RWEEADLVRKEM 443 (586)
Q Consensus 432 -~~~~a~~~~~~m 443 (586)
..++|.++++.+
T Consensus 287 ~~~~~a~~~~~~l 299 (320)
T PLN02789 287 SDSTLAQAVCSEL 299 (320)
T ss_pred ccHHHHHHHHHHH
Confidence 235677777777
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.5e-05 Score=71.96 Aligned_cols=60 Identities=7% Similarity=-0.113 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007878 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIID--KN-D---VSWCSMLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
...+..+...+.+.|++++|...|+++.. |+ . .+|..+...|.+.|++++|+..|+++.+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555554422 11 1 2334445555555555555555555544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9e-06 Score=69.00 Aligned_cols=107 Identities=11% Similarity=-0.023 Sum_probs=91.2
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007878 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 336 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
.+|+... .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444443 335553 556788889999999999999997 4444 67888999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 414 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
|+++..+..++.++...|+.++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987743
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00014 Score=79.05 Aligned_cols=221 Identities=12% Similarity=0.128 Sum_probs=171.7
Q ss_pred CCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CCC---CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C-hhhH
Q 007878 108 EPD-LITFCAFLNACSDCSLLQLGRQLHGFLVRS-GFD---GNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDK-N-DVSW 180 (586)
Q Consensus 108 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~-~~~~ 180 (586)
.|| ...|..-+.-....++++.|+++.++++.. ++. --..+|.++++.-..-|.-+...++|++..+- | -..|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 355 446777777788889999999999988765 111 12457888888888888889999999988653 3 3468
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHh
Q 007878 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYGK 259 (586)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 259 (586)
..|...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+...-+.|+.++.++.+.-++. .+....-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999875 34566778888899999999999999999888765442 34556667778889
Q ss_pred cCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCH
Q 007878 260 CGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAV 331 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~ 331 (586)
+|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++... .++.|-. ..|.-.|..=-..|+-
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~--l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE--LKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHhcCch
Confidence 9999999999998764 3567899999999999999999999999998 6666642 3444444433333443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00073 Score=69.82 Aligned_cols=187 Identities=9% Similarity=0.017 Sum_probs=96.4
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHh-C--------CCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccH
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKS-G--------QIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATW 79 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 79 (586)
+...|..+.+.|.+.++++-|+-.+..|... | -.++ ..-....-.....|.+++|+.++.+-++ |
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----Y 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----H
Confidence 3456777777777777777777666665421 1 1121 2222222233455677777777766554 3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH----------HhC--------
Q 007878 80 NAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLV----------RSG-------- 141 (586)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----------~~g-------- 141 (586)
..|=..|-..|.+++|+++-+.=-+-.++ .||..-..-+-..++.+.|.+.|+..- ...
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 33334455566677766665442221111 234333444444555665555544321 110
Q ss_pred -CCCChhHHHHHHHHHHhcCChHHHHHHHhcCC------------------------CCChhhHHHHHHHHHHcCChHHH
Q 007878 142 -FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII------------------------DKNDVSWCSMLVVYVQNYEEENG 196 (586)
Q Consensus 142 -~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~A 196 (586)
-..|...|.-...-.-..|+.+.|+.+|.... ..|.....-+...|-..|++.+|
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence 01233334434444445566666666665431 12444555666777777777777
Q ss_pred HHHHHHHH
Q 007878 197 CQMFLTAR 204 (586)
Q Consensus 197 ~~~~~~m~ 204 (586)
+.+|.+.+
T Consensus 987 v~FfTrAq 994 (1416)
T KOG3617|consen 987 VKFFTRAQ 994 (1416)
T ss_pred HHHHHHHH
Confidence 77776553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.8e-05 Score=81.01 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=123.3
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEH 353 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 353 (586)
.++..+-.|.....+.|++++|..+++...+ +.|| ......+...+.+.+++++|+...++... ..|+ ...
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~ 156 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSARE 156 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHH
Confidence 3477788888889999999999999999987 5687 45677788899999999999999998874 3555 667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
...+..++.+.|++++|.++|++. ...| +..+|..+..++...|+.++|...|+++.+...+-...|..++ +
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~ 230 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------H
Confidence 788888999999999999999998 2334 4788999999999999999999999999998755444443332 2
Q ss_pred ChHHHHHHHHHHHhCC
Q 007878 432 RWEEADLVRKEMKDVG 447 (586)
Q Consensus 432 ~~~~a~~~~~~m~~~g 447 (586)
++..-..+++++.-.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 231 DLNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHHHcCccc
Confidence 3333445555554333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0001 Score=66.27 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=116.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007878 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
+-.|.+.|+++.+....+.+..+. . .|...++.++++..++...+ .. +.|...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIR--AN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 456888888887765554433221 0 12235677888888888777 22 3467888899999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007878 334 GMKIFYSMTLKYGIKP-GAEHYACVVDLL-GRAGL--VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
|...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998874 345 577788888864 67777 59999999998 4455 56788888888999999999999999
Q ss_pred HHhccCCCCchhHHH
Q 007878 408 NLFKLDPNDSGNHVL 422 (586)
Q Consensus 408 ~~~~~~p~~~~~~~~ 422 (586)
+++++.|++..-+..
T Consensus 169 ~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 169 KVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHhhCCCCccHHHH
Confidence 999999887654433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=75.14 Aligned_cols=216 Identities=9% Similarity=0.044 Sum_probs=170.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007878 142 FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSA 221 (586)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 221 (586)
++|-...-..+...+.+.|-..+|..+|++ ...|...|-+|...|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 455556677788899999999999999997 46788899999999999999999888776 37888889888888
Q ss_pred HhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHH
Q 007878 222 CARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMAL 298 (586)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 298 (586)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++...|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 87777788888887665432 122222223346889999999987544 34568888888888999999999
Q ss_pred HHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 299 SSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 299 ~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+++..+- + .-+...|-..+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99998877 4566 578999999999999999999999998753 4 344556666677778899999999998887
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-05 Score=65.57 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
....-.+...+...|++++|..+|+-. ...| +..-|..|..+|...|++++|+..+.++..++|+++..+..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455666778899999999999987 4445 56678889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007878 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999998763
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=53.67 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh
Q 007878 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDL 111 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 111 (586)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0092 Score=62.83 Aligned_cols=411 Identities=12% Similarity=0.065 Sum_probs=239.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhhhHHHHHH--HHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHH
Q 007878 22 ALHIPVTGKQLHALALKSGQIHDVFVGCSAFDM--YSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAI 96 (586)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 96 (586)
..+++..|.+-.+.+.+. .|+. .|...+.+ ..|.|+.++|..+++.... .|..|...+-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456788888888888775 2443 23333443 3478999999988887654 36678888888999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHH
Q 007878 97 DAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE----------VGLAK 166 (586)
Q Consensus 97 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~ 166 (586)
.+|++.... -|+..-...+..++.+.+++.+-.++--++-+. ++.+.+.+=++++.+...-. +.-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998763 577777888888898888877655544444333 45556666666666655422 33456
Q ss_pred HHHhcCCCCC-h-hhH---HHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH
Q 007878 167 VVFDGIIDKN-D-VSW---CSMLVVYVQNYEEENGCQMFL-TARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 167 ~~~~~~~~~~-~-~~~---~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (586)
+.++.+.+.+ . .+- -.-...+-..|++++|++++. ..-+.-...+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6666665544 1 111 111233456788999999884 333332333444445566777788889998888888888
Q ss_pred hCCCCchhHHHHHHHHHHh----------------cCCHHHHHHHHhhCCC-CCeeHHHHHHHHHH---hcCCHHHHHHH
Q 007878 241 ACVEGNIFVGSALVDMYGK----------------CGSIQDAEIAFNKMPE-RNLVCWNAIIGGYA---HQGHADMALSS 300 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~---~~g~~~~A~~~ 300 (586)
.|.. | |...++.+.+ .+.++...+..++... ..-..|-+-+..+. .-|+.+++...
T Consensus 255 k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 8765 2 3333333222 2333333333332221 12223333333333 34777776655
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH-------HHHHHHHHHHhcCCh-----H
Q 007878 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE-------HYACVVDLLGRAGLV-----D 368 (586)
Q Consensus 301 ~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~ 368 (586)
|-+- -|-+| .+..=+..|...=..++-..++.... +..++.. -+.+.+....-.|.+ +
T Consensus 331 y~~k----fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 331 YFKK----FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHH----hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 4332 22222 11112222222222233333333332 1122211 122222222223311 1
Q ss_pred HHHHHHHhC------C------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCCCchhHHHHH
Q 007878 369 RAYEIIKEM------P------MRPTI---------SVWGALLNACRVYGKPE---LGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 369 ~A~~~~~~m------~------~~p~~---------~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.-..++++. + .-|+. -+.+.|+..+++.++.. +|+-+++......|.|..+-..++
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 122222221 1 11222 34567788888888754 788888888889999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCccCC
Q 007878 425 NMFAATGRWEEADLVRKEMKDVGIKKGA 452 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 452 (586)
.+|+-.|-+..|.++++.+--+.|..+.
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 9999999999999999998777776654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-05 Score=78.01 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=150.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
++|--..-..+...+.++|-...|..+|++. ..|...|.+|+..|+..+|..+..+-.+ -+||+..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le----k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE----KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc----CCCcchhHHHhh
Confidence 3444455667888999999999999999984 5788899999999999999998887766 358999999999
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
.......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 9888888899999999876432 1111222233468888888888764 4443 4568888888888888999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.|.+.|.....++|++...|+.++.+|.+.|+..+|...+++..+-.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999988887765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-05 Score=66.70 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=96.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc
Q 007878 319 VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVY 396 (586)
Q Consensus 319 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 396 (586)
..+-.++.-.|+-+....+...... .-..|......++....+.|++.+|...|++. +-.+|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 5555666777777777777766532 22334555666778888888888888888887 4446778888888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 397 GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
|+.++|...+.+++++.|+++.....++..|.-.|+.++|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888888776543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0074 Score=59.92 Aligned_cols=428 Identities=12% Similarity=0.084 Sum_probs=244.1
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHH
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNA 86 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 86 (586)
|..+|+.||+-+... ..++++..+++++.. ++..+..|..-|..-.+..+++..+++|.+... -++..|..-|+--
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 677788888876655 788888888888764 456677788888888888888888888887653 4667777776533
Q ss_pred Hc-CCChhH----HHHHHHH-HHHCCCCCChh-hHHH---HHHH------HhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 007878 87 VL-GGRPKN----AIDAFIN-LRRTGGEPDLI-TFCA---FLNA------CSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 87 ~~-~g~~~~----A~~~~~~-m~~~g~~p~~~-t~~~---ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
-+ .|.... ....|+- |.+.|+.|-+. .|+. .+.. +....+++..++++..++...+..=...|+
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 22 233322 2223332 23445444332 2333 3332 222334556667777776543221111221
Q ss_pred H------HHHHH-------HhcCChHHHHHHHhcCCC------CC---------------hhhHHHHHHHHHHcCCh---
Q 007878 151 G------LVDFY-------GKCNEVGLAKVVFDGIID------KN---------------DVSWCSMLVVYVQNYEE--- 193 (586)
Q Consensus 151 ~------ll~~~-------~~~g~~~~A~~~~~~~~~------~~---------------~~~~~~li~~~~~~g~~--- 193 (586)
- =|+.. -+...+-.|+++++++.. ++ +..|-.+|.-=-.++.-
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 1 11110 122344556666655411 11 11243333321111110
Q ss_pred -----HHHHHHHHH-HHHCCCCCCHhHH-HHHH----HHHhcccC-------cHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007878 194 -----ENGCQMFLT-ARREGVEPKDFMI-SSVL----SACARIAG-------LELGRSVHAVAVKACVEGNIFVGSALVD 255 (586)
Q Consensus 194 -----~~A~~~~~~-m~~~g~~p~~~t~-~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 255 (586)
....-.+++ |.--+..|+.... ...+ ..+...|+ -+++..+++..+..-...+..+|..+.+
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~ 336 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD 336 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011111111 1222334433211 1111 11222232 4677788888777655556666666654
Q ss_pred HHHhcC---CHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhc
Q 007878 256 MYGKCG---SIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSR 327 (586)
Q Consensus 256 ~~~~~g---~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~ 327 (586)
.=-..- ..+.....+++... .-..+|-..+..-.+..-...|..+|.+..+ .+..+ +....++++.-+ .
T Consensus 337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~--~~r~~hhVfVa~A~mEy~-c 413 (656)
T KOG1914|consen 337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE--DKRTRHHVFVAAALMEYY-C 413 (656)
T ss_pred hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh--ccCCcchhhHHHHHHHHH-h
Confidence 321111 24455555555442 3445777778777777778899999999998 66666 556666777655 4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHH
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM---PMRPT--ISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a 402 (586)
+++.+-|.++|+.=.+++|-. ..--...++-+...++-..|..+|++. .+.|| ..+|..+|.-=..-|+...+
T Consensus 414 skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 688899999999877765433 344467788889999999999999987 23333 47899999998899999999
Q ss_pred HHHHHHHhccCCCC----chhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 403 RIAADNLFKLDPND----SGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 403 ~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
..+-++....-|.+ ...-..+.+.|.-.+....-..-++.|
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88888877655521 123334555566555554444333333
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-06 Score=52.60 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 007878 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD 212 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 212 (586)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00018 Score=64.67 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=83.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007878 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 363 (586)
+-..+...|+.+....+...... .-.-|.......+......|++.+|...|.+... .-++|...|+.+.-+|.+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 34445555555555555544332 1111233333455555566666666666665542 334455666666666666
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 007878 364 AGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
.|+.++|..-|.+. .+.| +....+.|...+.-.|+.+.|..++.......+.++.+-..|.-+....|++++|..+-
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666555554 2222 34455566666666666666666666666666656666666666666666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.001 Score=64.28 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=113.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007878 186 VYVQNYEEENGCQMFLTARREGVEPKDF-MISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
.+...++.++|+.+..++.+. .|+.. .|..--.++...| .++++...+..+.+..++ +..+++-....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 344455666666666666552 34333 2332223333444 456666666666665544 344444443344444442
Q ss_pred --HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhcc---CC----H
Q 007878 264 --QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRA---GA----V 331 (586)
Q Consensus 264 --~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~---g~----~ 331 (586)
+++..+++++.+ .|..+|+...-.+...|+++++++.+.++++ .+. -|...|+.....+.+. |. .
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDV-RNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCC-CchhHHHHHHHHHHhccccccccccH
Confidence 455566655543 4556666666666666777777777777766 331 2344444443333332 21 2
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC--------
Q 007878 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA----GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG-------- 397 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-------- 397 (586)
++.+.+...++.. .+-+...|+.+...|... ++..+|.+++.+. ...| +......|+..|+...
T Consensus 200 e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 3455555444432 122355566565555552 3345566666654 2233 4455566666655421
Q ss_pred ----------CHHHHHHHHHHHhccCCC
Q 007878 398 ----------KPELGRIAADNLFKLDPN 415 (586)
Q Consensus 398 ----------~~~~a~~~~~~~~~~~p~ 415 (586)
..++|..+++.+.+.+|-
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235667777766544553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00038 Score=68.05 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACV 357 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 357 (586)
.+--..-.+...|++++|+..++.+.. . .|| ..........+...++.++|.+.++.+.. ..|+ ....-.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--A--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 333344455667888999999988877 2 355 44444556778888999999999988874 4666 5566677
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007878 358 VDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
.++|.+.|++.+|+.++++. ..+-|+..|..|..+|...|+..++.... +..|+..|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 88888999999999888887 33446778899999999988877665543 345778899999
Q ss_pred HHHHHHHHHhC
Q 007878 436 ADLVRKEMKDV 446 (586)
Q Consensus 436 a~~~~~~m~~~ 446 (586)
|...+....++
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 99888888765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.6e-06 Score=51.37 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 007878 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP 109 (586)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 109 (586)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578889999999999999999999998888887
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00051 Score=73.35 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=117.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHH
Q 007878 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTL 318 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~ 318 (586)
...++..+-.|.......|.+++|+.+++...+ | +...+..+...+.+.+++++|+..+++... ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHH
Confidence 445688888899999999999999999999875 5 445777788999999999999999999988 3476 4566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 007878 319 VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLN 391 (586)
Q Consensus 319 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 391 (586)
..+..++.+.|++++|..+|+++... .|+ ...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 67778899999999999999999752 344 788899999999999999999999998 33455566665554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.8e-05 Score=63.51 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007878 348 KPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 348 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++.+.+|+++..+..++
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 443 344556667777788888888888776 3333 5667777777788888888888888888888888888888888
Q ss_pred HHHhhcCChHHHHHHHHHHHhC
Q 007878 425 NMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..|...|++++|...++...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=72.35 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=101.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACR 394 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 394 (586)
...+++..+...++++.|+.+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3446677777888999999999998754 455 4455788888888888999998887 3333 5556666666688
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
..++++.|+.+++++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00041 Score=67.85 Aligned_cols=177 Identities=19% Similarity=0.125 Sum_probs=129.1
Q ss_pred CHHHHHHHHhhCCC------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007878 262 SIQDAEIAFNKMPE------RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGM 335 (586)
Q Consensus 262 ~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 335 (586)
++.+++..-+.++. ++...+...+.+.........+..++-+-.+ .+ -...-|...+ .+...|.+++|+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~--~~aa~YG~A~-~~~~~~~~d~A~ 326 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RG--GLAAQYGRAL-QTYLAGQYDEAL 326 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--cc--chHHHHHHHH-HHHHhcccchHH
Confidence 44555656666653 4445555555554433333333333222221 11 1233344433 455789999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007878 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 336 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
..++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+..++.....+
T Consensus 327 ~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 327 KLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 999998764 3334566667889999999999999999998 66677 6778888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 414 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|+++..|..|+.+|...|+..++.....++..
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999998887764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.003 Score=56.98 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=109.1
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007878 233 SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
.+.+.+.......+......-...|+..|++++|.+.......-.....+ ...+.+..+.+-|.+.+++|.+ .
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--i--- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--I--- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--c---
Confidence 34444444444444344444455678888888888888774333333333 3345667778888888888877 2
Q ss_pred CCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHH
Q 007878 313 PNYVTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVW 386 (586)
Q Consensus 313 pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~ 386 (586)
-+..|.+.|..++.+ .+.+..|.-+|++|.. ...|+..+.+....+....|++++|..++++. ....++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 356677766666543 3567788888888864 35677777777777777778888888887776 222345555
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHhccCCCCc
Q 007878 387 GALLNACRVYGKP-ELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 387 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 417 (586)
..++..-...|.. +--.+...++....|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5555544444544 334456666666666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00039 Score=75.00 Aligned_cols=215 Identities=9% Similarity=0.066 Sum_probs=144.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 007878 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL-SACARIAGLELGRSVHAVAVKACVEGNIFVGSAL 253 (586)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 253 (586)
.+...|..|+..|...+++++|.++.+...+. .|+...+-... ..+.+.++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35678899999999999999999999866663 56654433222 244555555444433 23
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCH
Q 007878 254 VDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~ 331 (586)
++...+..++.-...+...|.+ .+-.++-.+..+|-+.|+.++|.++|+++.+ .. +-|....|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--AD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cC-cccHHHHHHHHHHHHHh-hH
Confidence 3333333344333333333332 2334677788888888999999999999888 33 23577788888888888 88
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C---------------------CCCCHHHHHHH
Q 007878 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P---------------------MRPTISVWGAL 389 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------------------~~p~~~~~~~l 389 (586)
++|.+++..++.. |....++.++.+++.++ . ..--+.++--+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 8888888877653 33334444444444444 1 11223445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 390 LNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 577888899999999999999999999888888888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-06 Score=49.81 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 007878 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEP 210 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 210 (586)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=71.34 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007878 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
....+|+..+...++++.|.++|+++.+.+...+..++..+...++-.+|++++++..+ .. +-|...+..-...|.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--EN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHh
Confidence 34445666777788999999999999887777777788888888899999999999887 22 2255556666677889
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEMPMRP 381 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 381 (586)
.++++.|+.+.+++.. ..|+ ..+|..|...|.+.|++++|+..++.+|..|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999974 4666 5689999999999999999999999987654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0056 Score=66.37 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcC
Q 007878 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG 292 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 292 (586)
..+-.+..+|.+.|+.+++..+++++++..+. |+.+.|.+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 35555556666666666666666666666633 666666666666666 666666666553 22255555
Q ss_pred CHHHHHHHHHHhhh
Q 007878 293 HADMALSSFEEMTS 306 (586)
Q Consensus 293 ~~~~A~~~~~~m~~ 306 (586)
++.++.++|.++..
T Consensus 184 q~~~~~e~W~k~~~ 197 (906)
T PRK14720 184 QYVGIEEIWSKLVH 197 (906)
T ss_pred cchHHHHHHHHHHh
Confidence 66666666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0033 Score=56.77 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=97.5
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCe
Q 007878 200 FLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-RNL 278 (586)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 278 (586)
.+.+.......+......-...|...+++++|........ +......=+..+.|..+++-|.+.++.|.+ .+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3334443334443334444455666777777766654411 223333334556677778888888888876 444
Q ss_pred eHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 007878 279 VCWNAIIGGYAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY 354 (586)
Q Consensus 279 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 354 (586)
.+.+.|..++.+ .+...+|.-+|++|-+ ...|+..+.+....++...|++++|..+++....+. ..++.+.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL 244 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETL 244 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHH
Confidence 566666666554 3457788888888865 366888888888888888888888888888877542 2334555
Q ss_pred HHHHHHHHhcCChHH
Q 007878 355 ACVVDLLGRAGLVDR 369 (586)
Q Consensus 355 ~~li~~~~~~g~~~~ 369 (586)
..+|-.-...|...+
T Consensus 245 ~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHhCCChH
Confidence 555555445555433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00038 Score=58.47 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=86.4
Q ss_pred HHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 007878 300 SFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM- 377 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 377 (586)
.+++... ..|+ ......+...+...|++++|...|+.+... -+.+...+..+...+.+.|++++|...+++.
T Consensus 5 ~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLG----LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHc----CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544 3354 345666777788889999999999888653 2345778888888899999999999988887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007878 378 PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 378 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
...| +...+..+...+...|+++.|...++++.+++|++..
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3334 5677777888899999999999999999999988754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00061 Score=58.00 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCChH
Q 007878 291 QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~ 368 (586)
.++...+...++.+.+...+-.........+...+...|++++|...|+.+... ...|+ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555511110001122223334455556666666666555543 21111 112223444455555555
Q ss_pred HHHHHHHhC
Q 007878 369 RAYEIIKEM 377 (586)
Q Consensus 369 ~A~~~~~~m 377 (586)
+|+..++..
T Consensus 103 ~Al~~L~~~ 111 (145)
T PF09976_consen 103 EALATLQQI 111 (145)
T ss_pred HHHHHHHhc
Confidence 555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=47.08 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 007878 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGG 107 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 107 (586)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00091 Score=56.91 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALL 390 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll 390 (586)
.|..++.++ ..++...+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 47888999999999987633221 1234445668889999999999999998 222443 3455567
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
..+...|++++|+..++.. ...+..+..+...+.+|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7789999999999999763 233445677889999999999999999999864
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.046 Score=54.52 Aligned_cols=397 Identities=10% Similarity=0.069 Sum_probs=231.1
Q ss_pred CCChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 007878 42 IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118 (586)
Q Consensus 42 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 118 (586)
+-|..+|+.||.-+... .+++++..++++.. | ....|..-|..-....+++....+|.+-+..-+. ..-|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 67899999999988766 99999999999876 3 4457999999999999999999999998765443 44444444
Q ss_pred HHHhcC-CChHH----HHHHHHHH-HHhCCCCC-hhHHHHHHHH---------HHhcCChHHHHHHHhcCCCC-------
Q 007878 119 NACSDC-SLLQL----GRQLHGFL-VRSGFDGN-VSVCNGLVDF---------YGKCNEVGLAKVVFDGIIDK------- 175 (586)
Q Consensus 119 ~~~~~~-~~~~~----a~~~~~~~-~~~g~~~~-~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~------- 175 (586)
.-..+. ++... ..+.|+.. .+.|+++- ...|+..+.. |....+++..+++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 433222 33333 23344443 34565553 3356665553 33445677788888887542
Q ss_pred ---ChhhHHHHHHHHH-------HcCChHHHHHHHHHHHH--CCCCCCHhH---------------HHHHHHHHhcccCc
Q 007878 176 ---NDVSWCSMLVVYV-------QNYEEENGCQMFLTARR--EGVEPKDFM---------------ISSVLSACARIAGL 228 (586)
Q Consensus 176 ---~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~~~~ 228 (586)
|-..|..=|+... +...+..|.+++++... .|+.-+..+ |...|.- -+.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCc
Confidence 2222322222211 23345567777776643 354433322 2222211 111111
Q ss_pred H--H-------HHHHHHH-HHHhCCCCchhHHHH-----HHHHHHhcCCH-------HHHHHHHhhCCC----CCeeHHH
Q 007878 229 E--L-------GRSVHAV-AVKACVEGNIFVGSA-----LVDMYGKCGSI-------QDAEIAFNKMPE----RNLVCWN 282 (586)
Q Consensus 229 ~--~-------a~~~~~~-~~~~~~~~~~~~~~~-----li~~~~~~g~~-------~~A~~~~~~m~~----~~~~~~~ 282 (586)
. . ..-++++ +.-.+..|++....+ .-+.+...|+. +++..+++.... .+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 0011111 112334443332111 12233334443 333444443322 1222222
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 007878 283 AIIGGYA---HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVV 358 (586)
Q Consensus 283 ~li~~~~---~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 358 (586)
.+..--- ..+..+.....+++.... ..+.| ..+|..+++.--+..-++.|+.+|.++.+. +..+ ++.++++++
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKI-EDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALM 409 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhh-hccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHH
Confidence 2221111 111245556666666652 22333 346777788888888899999999999766 5555 677888888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcc--CCC-CchhHHHHHHHHhhcCCh
Q 007878 359 DLLGRAGLVDRAYEIIKEM-PMRPTISV-WGALLNACRVYGKPELGRIAADNLFKL--DPN-DSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~ 433 (586)
.-|| .++.+-|.++|+-- .--+|... -...+.-+...++-..+..+|++++.. .|+ ....|..++.--+.-|+.
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 8665 56778889988764 22244433 455666677788888899999998886 332 346788888877888999
Q ss_pred HHHHHHHHHHHhC
Q 007878 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
+.+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.6e-05 Score=46.26 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 007878 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGV 208 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 208 (586)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00029 Score=54.39 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888888776 3333 33566677777788888888888888888888887778888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 007878 432 RWEEADLVRKEMKD 445 (586)
Q Consensus 432 ~~~~a~~~~~~m~~ 445 (586)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00062 Score=55.58 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=48.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 007878 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNAC 393 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 393 (586)
.+...+...|++++|...|..+...+.-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444555555555555555543211101 1223444555555555555555555554 11222 33455555555
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCch
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
...|+.++|...++++.+..|++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0074 Score=54.17 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHH---HHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAI---IGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
|.-++-+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++++...+ .+ +.|.+++..=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cC-cchhHHHHHHHHHHH
Confidence 34444455567777777777776654212222111 1113446888999999999887 43 345677776666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHH
Q 007878 327 RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY---GKPEL 401 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~ 401 (586)
..|+.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++ -..| ++..+..+...+... .+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788888888776 45778889999999999999999999989887 3344 444455555554333 36778
Q ss_pred HHHHHHHHhccCCCCchhHH
Q 007878 402 GRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~ 421 (586)
|...+.+.+++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 89999999999986554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.3e-05 Score=58.11 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=39.9
Q ss_pred CChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 007878 365 GLVDRAYEIIKEM-PMRP---TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 365 g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444555554444 1111 233444455555555566666555555 4444544455555566666667777666666
Q ss_pred HH
Q 007878 441 KE 442 (586)
Q Consensus 441 ~~ 442 (586)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00058 Score=55.74 Aligned_cols=96 Identities=19% Similarity=0.063 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHH
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLL 423 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 423 (586)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999988 33343 3466778888999999999999999999988775 4578889
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCC
Q 007878 424 SNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=52.33 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG-RWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 445 (586)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999998765
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=65.34 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=59.3
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
...+...|++++|+..|.++++. .| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34455566777777777666542 33 3455556666666666666666666665 3333 34455666666666666
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHH
Q 007878 399 PELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
+++|+..++++++++|+++.....+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6666666666666666665554444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0095 Score=53.48 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH-HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV-LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
|..++-+....|+.+.|...++++.. . + |...-...+ ..-+-..|.+++|+++++.+..+ -+.|..+|-.-+-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~--~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRD--R-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH--h-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHH
Confidence 33445556678999999999999887 2 3 543322211 11244579999999999999875 2445777777777
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC---ChH
Q 007878 360 LLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG---RWE 434 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 434 (586)
..-..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++-..|.++..+..++..+.-.| +.+
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 777888888888877776 455799999999999999999999999999999999999999999999877655 566
Q ss_pred HHHHHHHHHHhCC
Q 007878 435 EADLVRKEMKDVG 447 (586)
Q Consensus 435 ~a~~~~~~m~~~g 447 (586)
-+++++.+..+..
T Consensus 209 ~arkyy~~alkl~ 221 (289)
T KOG3060|consen 209 LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhC
Confidence 7888888877643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0026 Score=65.92 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+...|.++.......|++++|...++++.+++| +...|..++..|...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555445556666666666666666666 355666666666666666666666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0003 Score=50.29 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778889999999999999999998889999999999999999999999888653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=57.29 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
..+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555556666667777776666665 22222 35677777778888888888888888888888888788778888
Q ss_pred HhhcCC
Q 007878 427 FAATGR 432 (586)
Q Consensus 427 ~~~~g~ 432 (586)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777666
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=57.26 Aligned_cols=94 Identities=11% Similarity=-0.107 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
...|..+...+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..++++.++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 556667777777888889888888877 33332 3478888888999999999999999999999988888888888
Q ss_pred HHh-------hcCChHHHHHHHHHHH
Q 007878 426 MFA-------ATGRWEEADLVRKEMK 444 (586)
Q Consensus 426 ~~~-------~~g~~~~a~~~~~~m~ 444 (586)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 7888887776666543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.004 Score=59.69 Aligned_cols=266 Identities=14% Similarity=0.044 Sum_probs=157.3
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcH
Q 007878 154 DFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLE 229 (586)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~ 229 (586)
..+.+..++.+|+..+...++ .+..-|..-...+...|++++|+--.+.-.+ ++|.. ....-.-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 445556666666666654322 2344555566666666666666655443332 22221 12223333333334444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHH-HHHHHhcCCHHHHHHHHHH
Q 007878 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAI-IGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 303 (586)
+|.+.+. +...+ ....|...++.... |...+|-.+ ..++.-.|+.++|.+.-..
T Consensus 135 ~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 4443333 00000 11122222222221 223344433 2345667888888887766
Q ss_pred hhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH-------------HHHHHhcCChHHH
Q 007878 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV-------------VDLLGRAGLVDRA 370 (586)
Q Consensus 304 m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------------i~~~~~~g~~~~A 370 (586)
..+. . .-+......-..++...++.+.|...|++.+ .+.|+...-..+ .+...+.|++.+|
T Consensus 195 ilkl--d-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--D-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--c-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 6662 1 0122222222234456678888888888775 456653322111 2345678999999
Q ss_pred HHHHHhC-CCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 371 YEIIKEM-PMR-----PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 371 ~~~~~~m-~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+.+.+. .+. |+...|.....+..+.|+.++|+.-.+++.+++|.-...+..-++.+...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 444 4556677777778889999999999999999999888888888999999999999999999877
Q ss_pred hCC
Q 007878 445 DVG 447 (586)
Q Consensus 445 ~~g 447 (586)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.12 Score=50.07 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=64.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007878 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
|.-+...|+...|.++-.+..-|+-.-|-..+.+|+..+++++-.++... .+ .++-|-.++.+|.+.|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-------sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-KK-------SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-------CCCChHHHHHHHHHCCCHHH
Confidence 44455567777777777666667777777777777777777666554322 11 23556666777777777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007878 334 GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
|..+...+ + +..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666542 1 13345667777777777655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0056 Score=53.81 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=76.1
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHH
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHY 354 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 354 (586)
...+..+...+...|++++|...|++..+ ....|+ ...+..+...+.+.|++++|...+.+.... .| +...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALK--LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHH
Confidence 34556666666677777777777777765 221111 345666666777777777777777766542 33 24445
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007878 355 ACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
..+...|...|+...+..-++.. ...+++|.+.++++.+.+|++ +..+...+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55555666666555444322211 112577888888888888876 4445555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=49.58 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
|..+...+...|++++|...+++..+ .. +.+...+..+...+...|++++|...|+..... .+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHH
Confidence 44455555566666666666666555 21 112244444555555555555555555554321 11122334444444
Q ss_pred HHhcCChHHHHHHHHh
Q 007878 361 LGRAGLVDRAYEIIKE 376 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~ 376 (586)
+...|++++|...+.+
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.11 Score=53.36 Aligned_cols=314 Identities=13% Similarity=0.095 Sum_probs=157.1
Q ss_pred cCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHH
Q 007878 58 TGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPD----LITFCAFLNACSDCSLLQLGRQL 133 (586)
Q Consensus 58 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 133 (586)
.|++++|.+++-.|.++|.. |..+.+.|++-...++++. -|-..| ...++.+...++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999888888877753 5566667777666655542 111111 23566666666666667777666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh
Q 007878 134 HGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF 213 (586)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 213 (586)
+..-.. ....+.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+- + .|
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p--- 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP--- 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc---
Confidence 654321 123556666666666666665555543 334556677777888888887766332 1 12
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHhCCC-----------CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---Cee
Q 007878 214 MISSVLSACARIAGLELGRSVHAVAVKACVE-----------GNIFVGSALVDMYGKCGSIQDAEIAFNKMPER---NLV 279 (586)
Q Consensus 214 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 279 (586)
...+..|...++|.+|.++-+...-..+. .+..+. --|..+-+.|+.-+|-+++.+|.+. .-+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~ 958 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYV 958 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccC
Confidence 23455666677776666554322110000 000111 1245566677766666666666531 111
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007878 280 CWNAIIGGYA----HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 280 ~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
.|..+=..|. -..+..++++-.++... .|...|... +...|-..++-++.+..-+ -....++.
T Consensus 959 p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~--~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFm 1025 (1189)
T KOG2041|consen 959 PYLRLKKLYVLGALLVENHRQTIKELRKIDK--HGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFM 1025 (1189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--cCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHH
Confidence 1111111111 11122233333333333 332222111 1122333333333332211 12345556
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM----PMRPTISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
.|.+--...|..+.|+..--.+ .+-|...+|..|.-+-+....+.---+.|-++...
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 6666666778888877654333 23356666766655544444444444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0018 Score=59.65 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=74.5
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007878 325 CSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~ 401 (586)
..+.+++++|+..|..++ .+.|+ .+.|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456788888888888876 34554 566667778888888888888777766 55554 4678888888999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHH
Q 007878 402 GRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
|++.|+++++++|++......|-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999999988755544443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=49.83 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccc--------CcHHHHHHHHHHHHhCCCCchhHH
Q 007878 180 WCSMLVVYVQNYEEENGCQMFLTARREGV-EPKDFMISSVLSACARIA--------GLELGRSVHAVAVKACVEGNIFVG 250 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 250 (586)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677777999999999999999999 999999999999887653 344567788999999999999999
Q ss_pred HHHHHHHHh
Q 007878 251 SALVDMYGK 259 (586)
Q Consensus 251 ~~li~~~~~ 259 (586)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.034 Score=56.50 Aligned_cols=231 Identities=14% Similarity=0.097 Sum_probs=117.6
Q ss_pred HHHHHHHHhcCCChHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 007878 114 FCAFLNACSDCSLLQLGR--QLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY 191 (586)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 191 (586)
++..=.+|.+.++..--+ .-++.+.+.|-.|+... +...++-.|++.+|.++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 344444555555443322 22445666776676554 44556778888888888754 56
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 007878 192 EEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFN 271 (586)
Q Consensus 192 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 271 (586)
.-..|+++|..|+--. ...-+...|..++-..+.+.-.+.. -++.--.+...++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 6666777776654211 1112223344333333332211110 00111123345556677777775543
Q ss_pred hCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh
Q 007878 272 KMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351 (586)
Q Consensus 272 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 351 (586)
..+|-.+-+.++-+++-. .+..+...+..-+.+...+..|-++|..|-.
T Consensus 727 -----------------~d~gW~d~lidI~rkld~------~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK------AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch------hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 334445555555544433 2334444444445555666667777766621
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEMP-MRPTISV-----------WGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-----------~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
...++++-...+++.+|..+-++.| ..||+.. |.-.-.+|.+.|+..+|.++++++..
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1345666677777777777777763 3344311 11122344555566666666666544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.13 Score=49.79 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007878 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACR 394 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 394 (586)
..+.+..+.-|...|....|.++-.+. .+ |+...|...+.+|+..++|++-.++... +-.+.-|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345666677788889988888876544 44 8899999999999999999998887654 334578999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
..|+..+|..+..++ .+..-..+|.+.|+|.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999888772 12455678899999999988755443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.074 Score=50.95 Aligned_cols=99 Identities=7% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----Hh-HHHHHHHHHhcccCcHHHHHHHHHHHHhC--CCC--chhH
Q 007878 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPK-----DF-MISSVLSACARIAGLELGRSVHAVAVKAC--VEG--NIFV 249 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~ 249 (586)
+..+...+.+.|++++|+++|++....-...+ .. .+...+-++...|+...|...++...... +.. ...+
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34456667777778888877777765432211 11 12222334444566666666666655432 211 1334
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhhCCCCCe
Q 007878 250 GSALVDMYGK--CGSIQDAEIAFNKMPERNL 278 (586)
Q Consensus 250 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~ 278 (586)
...|+.+|-. ...++.|..-|+.+.+.|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 4455555543 2346666666666655443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0037 Score=61.98 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=82.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 007878 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLL 361 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 361 (586)
....+...|++++|++.|++.++ . .| +...|..+..+|.+.|++++|+..++.+.. +.| +...|..+..+|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--L--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHH
Confidence 34556788999999999999998 3 34 467888888999999999999999999974 355 477888999999
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 007878 362 GRAGLVDRAYEIIKEM-PMRPTISVWGALLNA 392 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 392 (586)
...|++++|+..|++. .+.|+.......+..
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999987 566665555544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00064 Score=51.55 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHH
Q 007878 291 QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 369 (586)
.|+++.|+.+|+++.+.... .|+...+..+..++.+.|++++|..+++.. ...|+ ......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 46677777777777662110 113334444666777777777777777662 12222 2333344666667777777
Q ss_pred HHHHHHh
Q 007878 370 AYEIIKE 376 (586)
Q Consensus 370 A~~~~~~ 376 (586)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0033 Score=48.90 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 007878 80 NAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITFCAFLNACSDCS--------LLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 899999999999987653 2445678899999999999999999
Q ss_pred HHHHHHHh
Q 007878 151 GLVDFYGK 158 (586)
Q Consensus 151 ~ll~~~~~ 158 (586)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.04 Score=47.11 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHH
Q 007878 311 AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI-KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP---TISV 385 (586)
Q Consensus 311 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 385 (586)
+.|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...+++. ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 457777777888999999999999999998864 54 456777788888999999999999999887 2112 2223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 386 WGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.-.+...+...|+++.|+..|+.+....|. +..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455667788999999999999999998875 45556667778999998888765555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0086 Score=50.57 Aligned_cols=88 Identities=11% Similarity=-0.015 Sum_probs=75.5
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007878 358 VDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
.--+...|++++|..+|+-+ -.. -+..-|..|..+|...++++.|+..+..+..++++|+..+...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33456789999999999887 222 2455678888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007878 436 ADLVRKEMKD 445 (586)
Q Consensus 436 a~~~~~~m~~ 445 (586)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0029 Score=62.91 Aligned_cols=119 Identities=10% Similarity=-0.021 Sum_probs=88.0
Q ss_pred CCCChhhhHHHHHHHHhcCCchHHHHHhccCCC-C-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhH
Q 007878 41 QIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE-R-----NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF 114 (586)
Q Consensus 41 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 114 (586)
.+.+......+++......+++++..++-+... | -..|..++|+.|.+.|..++++.+++.=...|+-||.+|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 345555666677777777777777777665543 2 1234568888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 007878 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC 159 (586)
Q Consensus 115 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 159 (586)
+.|+..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887776666666666666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0005 Score=49.68 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=42.8
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
...|++++|+..++++.+..|++......++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888877653
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=60.56 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=76.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 007878 359 DLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 436 (586)
+-+.+.+++++|+..|.+. .+.| |.+-|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999987 6666 4555666777799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007878 437 DLVRKEMKD 445 (586)
Q Consensus 437 ~~~~~~m~~ 445 (586)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999988765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=55.68 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=94.3
Q ss_pred eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007878 279 VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA-CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
.+|-.++...-+.+..+.|..+|.+..+ .+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 3577777777777778888888888876 32 1223333333333 333566777999999988754 4566778888
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 358 VDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
++.+.+.|+.+.|..+|++. ..-|.. ..|...+.-=.+.|+.+....+.+++.+.-|.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999887 222333 4899999988899999999999999988877743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.028 Score=53.90 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=49.6
Q ss_pred Hhhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC---CC-----CCHH-HHHHH
Q 007878 324 ACSRA-GAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEMP---MR-----PTIS-VWGAL 389 (586)
Q Consensus 324 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~l 389 (586)
.|-.. |++++|++.|+....-+..... ...+..+...+.+.|++++|.++|++.. .. .+.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5666666666655443221111 3345556677777888888888877651 11 1111 12223
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 390 LNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+-.+...|++..|...+++....+|.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33455567888888888888877764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0071 Score=60.17 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=72.0
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhH
Q 007878 107 GEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG--FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID----KNDVSW 180 (586)
Q Consensus 107 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 180 (586)
.+.+...+..+++.+....+++.++.++-...... ...-..|..++|+.|.+.|..+.+..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 44466677777777777777777777766655442 112233445666666666666666666654322 566666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007878 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI 225 (586)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (586)
|.+|..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666655555666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=47.08 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=44.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 357 VVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345667778888888888777 4445 456677777778888888888888888888888763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=47.94 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=50.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 390 LNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...+...++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3467788999999999999999999999999999999999999999999999988643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0059 Score=58.29 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR-AGLVDRAYEIIKEM--PMRPTISVWGALLNA 392 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 392 (586)
.+|..++...-+.+..+.|+.+|..+.+.... +..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888899999999999999999753222 34555555555344 46666699999987 344577889999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 393 CRVYGKPELGRIAADNLFKLDPNDS---GNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...++.+.|..+|++.+..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999766543 57888888888999999999999998764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.023 Score=58.97 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=104.1
Q ss_pred CCCeeHHHHHHHHHHhc--CC---HHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhcc--------CCHHHHHHHHHH
Q 007878 275 ERNLVCWNAIIGGYAHQ--GH---ADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRA--------GAVEKGMKIFYS 340 (586)
Q Consensus 275 ~~~~~~~~~li~~~~~~--g~---~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~ 340 (586)
..|..+|...+.+.... +. ..+|..+|++..+ ..|| ...|..+..++... .++..+.+....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 36788999999986543 33 6799999999998 4476 45566554444322 123344444444
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007878 341 MTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 341 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
.........+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3221123345577887777777789999999999998 777898899999999999999999999999999999998753
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.3 Score=46.99 Aligned_cols=302 Identities=13% Similarity=0.045 Sum_probs=180.9
Q ss_pred CchHHHHHhccCCCCCcccHHHHHHHHHc--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh--cCCChHHHHHHHH
Q 007878 60 LKDDADKMFDEMPERNLATWNAYISNAVL--GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS--DCSLLQLGRQLHG 135 (586)
Q Consensus 60 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~ 135 (586)
....+.+.|..-+. | .-|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..+|.+-. -.|+.+.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR-d-rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR-D-RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh-h-hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34445555544332 1 236666666554 46666676665554322 4557777777777644 3489999999999
Q ss_pred HHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CC
Q 007878 136 FLVRSGFDGNVSV--CNGLVDFYGKCNEVGLAKVVFDGIID--K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VE 209 (586)
Q Consensus 136 ~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 209 (586)
.|... |.... ...|.-.--+.|..+.|...-+..-. | -...|.+.+...+..|+|+.|+++++.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 88743 22211 12222233466888877777665532 2 24567888999999999999999998776543 34
Q ss_pred CCHh--HHHHHHHHHhc---ccCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHH
Q 007878 210 PKDF--MISSVLSACAR---IAGLELGRSVHAVAVKACVEGNIFV-GSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCW 281 (586)
Q Consensus 210 p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~ 281 (586)
++.. .-..++.+-+. ..+...|+..-.+..+. .||..- --.-...|.+.|++.++-.+++.+-+ |....|
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 4443 22334433322 12445555555555543 333221 12235678888999999999888865 444333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007878 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
. +-.+.+.| |-++.-+++..+. ..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 300 ~--lY~~ar~g--dta~dRlkRa~~L-~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 300 L--LYVRARSG--DTALDRLKRAKKL-ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred H--HHHHhcCC--CcHHHHHHHHHHH-HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 2 22234444 3455555544443 335565 4566677777788888888777666554 457888888777776
Q ss_pred HHh-cCChHHHHHHHHhC
Q 007878 361 LGR-AGLVDRAYEIIKEM 377 (586)
Q Consensus 361 ~~~-~g~~~~A~~~~~~m 377 (586)
-.. .|+-.++...+.+.
T Consensus 372 eeAetGDqg~vR~wlAqa 389 (531)
T COG3898 372 EEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhhccCchHHHHHHHHHH
Confidence 543 48888887777766
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0062 Score=56.47 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=81.0
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCchhHHH
Q 007878 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVY---GKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
+-|...|-.|...|.+.|+.+.|..-|.+. .+. ++...+..+..++... ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445788888888888888888888888876 333 3455666666664332 24568899999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 423 LSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
|+..+...|++.+|...++.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.54 Score=49.20 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007878 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
+.-+...|+..+|.++-.+.+-||-..|--=+.+++..+++++-+++-+.+.. +.-|.....+|.+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--------PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--------PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--------CCCchhHHHHHHhcccHHH
Confidence 33444566666676666666666666666666666666666665555444322 2334455666667777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007878 334 GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
|.+++.... |.. -.+.+|.+.|++.+|.++-
T Consensus 763 A~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 763 AKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 766665441 111 3456666666666665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=47.60 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 007878 327 RAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGAL 389 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 389 (586)
..|++++|+.+|+.+... .| +...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777776543 33 4555566667777777777777777666 344554444443
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.026 Score=47.53 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007878 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.-.+..-+...|++++|.++|+....- .|.. .-|-.+..+|-..|++++|...|.......+. |+..+-.+..+|.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 334444455566666666666655542 2322 23333444444556666666666666555543 4555555556666
Q ss_pred hcCCHHHHHHHHhh
Q 007878 259 KCGSIQDAEIAFNK 272 (586)
Q Consensus 259 ~~g~~~~A~~~~~~ 272 (586)
+.|+.+.|++.|+.
T Consensus 115 ~lG~~~~A~~aF~~ 128 (157)
T PRK15363 115 ACDNVCYAIKALKA 128 (157)
T ss_pred HcCCHHHHHHHHHH
Confidence 66666666666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.084 Score=51.55 Aligned_cols=160 Identities=17% Similarity=0.089 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-Ce------eHHHHHHHHHHh---cCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007878 252 ALVDMYGKCGSIQDAEIAFNKMPER-NL------VCWNAIIGGYAH---QGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~~-~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
.++-.|-...+++...++.+.+... +. ..--...-++-+ .|+.++|++++..+.. ..-.++..||..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~--~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE--SDENPDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh--ccCCCChHHHHHH
Confidence 4445678888888888888888752 11 111123344555 7888999999888665 3445677777776
Q ss_pred HHHhh---------ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH----HHHHH---HhC-------C
Q 007878 322 LSACS---------RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR----AYEII---KEM-------P 378 (586)
Q Consensus 322 l~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~m-------~ 378 (586)
...|- .....++|+..|.+. +.+.|+..+--.++..+...|...+ ..++- ..+ .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 65542 223477888887755 4566775554444555555554222 22222 111 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 379 MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 379 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
-..|...+.+++.++.-.|+.+.|.+..+++.++.|+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 22567778899999999999999999999999998774
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.11 Score=44.48 Aligned_cols=98 Identities=16% Similarity=0.025 Sum_probs=53.1
Q ss_pred CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHH
Q 007878 209 EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNA 283 (586)
Q Consensus 209 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 283 (586)
.|+...-..+..+....|+..+|...|.+...--+..|..+.-.+.++....+++..|...++++-+ .....--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555545555556666666666666666655544444555555555555556666666655555432 12223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 007878 284 IIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+...|.-.|++.+|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0071 Score=53.32 Aligned_cols=97 Identities=13% Similarity=0.317 Sum_probs=69.3
Q ss_pred HHHHhhC--CCCCeeHHHHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC----------
Q 007878 267 EIAFNKM--PERNLVCWNAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG---------- 329 (586)
Q Consensus 267 ~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g---------- 329 (586)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+ -|+.-|..+|+.||..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e--fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE--FGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH--cCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3455554 346677777777777643 667777777888888 888888899999988776532
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007878 330 ------AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 330 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
+-+-|++++++|. ++|+-||.+++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 3466778888884 45888888888888887766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.66 Score=48.58 Aligned_cols=319 Identities=11% Similarity=0.029 Sum_probs=175.5
Q ss_pred CCCCCChhhHH-----HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCC--
Q 007878 105 TGGEPDLITFC-----AFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE---VGLAKVVFDGIID-- 174 (586)
Q Consensus 105 ~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~-- 174 (586)
-|+..+..-|. .+++-+...+.+..|.++-..+-..-.. ...++.....-+.+..+ -+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 44554444443 3444455566677777765554321111 14566666666666532 2223333344443
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC--------
Q 007878 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE----PKDFMISSVLSACARIAGLELGRSVHAVAVKAC-------- 242 (586)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------- 242 (586)
...++|..+..--.+.|+++-|..+++.=...+-+ .+..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777766432211100 112234445555666677666666554443321
Q ss_pred ---CCCchhHHHHHHH---------HHHhcCCHHHHHHHHh--hCC-----CCCeeHHHHHHHHHHhcCC---HHH----
Q 007878 243 ---VEGNIFVGSALVD---------MYGKCGSIQDAEIAFN--KMP-----ERNLVCWNAIIGGYAHQGH---ADM---- 296 (586)
Q Consensus 243 ---~~~~~~~~~~li~---------~~~~~g~~~~A~~~~~--~m~-----~~~~~~~~~li~~~~~~g~---~~~---- 296 (586)
.+.....|.-++. .|-...+. .+...|. ... ++-..........+++... .++
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1111122221111 11111111 1111111 100 1111122223334444332 112
Q ss_pred ---HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 007878 297 ---ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEI 373 (586)
Q Consensus 297 ---A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 373 (586)
-+.+.+.+..+ .|..-...|.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++
T Consensus 664 ~~kLl~lQ~~Le~q-~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQ-FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHH-hccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 22333333332 3333445566666777888899999998877663 58888999999999999999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 374 IKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 374 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
-+.+. .+.-|.-+..+|.+.|+.++|...+-+...+. -...+|.+.|++.+|.++--+
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 87763 24567788899999999999988877653321 456778899999988876443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.33 Score=45.16 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=36.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-HH---HHHHHHHhcccCcHHHHHHHHHHHHhCCC
Q 007878 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDF-MI---SSVLSACARIAGLELGRSVHAVAVKACVE 244 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (586)
.....+.+.|++++|.+.|+++...- |+.. .. -.+..++.+.++++.|...+++.++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34455566777777777777776642 3222 11 23445566677777777777776665544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.018 Score=46.57 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CchhHHHHHHHHhhcC
Q 007878 360 LLGRAGLVDRAYEIIKEM---PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPN---DSGNHVLLSNMFAATG 431 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 431 (586)
++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.....|+ +......++.++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555544 21111 123444555566666666666666666665555 4445555555666666
Q ss_pred ChHHHHHHHHHH
Q 007878 432 RWEEADLVRKEM 443 (586)
Q Consensus 432 ~~~~a~~~~~~m 443 (586)
+.++|.+.+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 666666665443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0092 Score=57.18 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSM---TLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMR-PTI 383 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~-p~~ 383 (586)
..|..|.+.|.-.|++++|+..++.- .+.+|-... ...++.+.+++.-.|+++.|.+.++.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45667777777788999998877642 233443322 456778888888899999998888764 211 344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----C--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKL----D--PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
-+..+|.+.|.....++.|+..+.+-+.+ + .....++..|+++|...|..+.|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56778888888888899998887765543 2 23457888999999999999999888776543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.021 Score=49.98 Aligned_cols=80 Identities=9% Similarity=-0.095 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007878 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPD--LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++.+.+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3455566666667777777777777765432221 2356666666777777777777777766552 223344555555
Q ss_pred HHH
Q 007878 155 FYG 157 (586)
Q Consensus 155 ~~~ 157 (586)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00096 Score=40.23 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.6
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007878 406 ADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.2 Score=40.36 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=89.7
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007878 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
+.-.|..++..++..+... + .+..-+|.++.-...+-+-+-..+.++.+-+-+.+. .+|++
T Consensus 12 ~ildG~V~qGveii~k~v~--S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~Nl 72 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN--S---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNL 72 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH--H---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-T
T ss_pred HHHhchHHHHHHHHHHHcC--c---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcch
Confidence 4456888888888888877 2 356667777766555666666666676664433222 34455
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.....-+-.++ .+..-....+.....+|+-+.-.++...+.+.+..++....-++++|.+.|+..++.+++++.-++|
T Consensus 73 KrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 73 KRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 55444444443 2344556677888899999988889888887666678899999999999999999999999999999
Q ss_pred Cc
Q 007878 448 IK 449 (586)
Q Consensus 448 ~~ 449 (586)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.55 Score=45.28 Aligned_cols=242 Identities=16% Similarity=0.141 Sum_probs=155.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHH----HHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007878 188 VQNYEEENGCQMFLTARREGVEPKDFMIS----SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
.-.|++++|.+-|+.|.. |..|-. .+.-..-+.|+.+.|.++-+.....-+. -.....+.+...+..|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDW 204 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCCh
Confidence 345666667666766654 222222 2222234567777777777766665444 345667778888888888
Q ss_pred HHHHHHHhhCCC-----CCee--HHHHHHHHHHh---cCCHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHhhccCCHH
Q 007878 264 QDAEIAFNKMPE-----RNLV--CWNAIIGGYAH---QGHADMALSSFEEMTSMRCEAVPNYVT-LVCVLSACSRAGAVE 332 (586)
Q Consensus 264 ~~A~~~~~~m~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~g~~pd~~t-~~~ll~a~~~~g~~~ 332 (586)
+.|+++.+.-.. +++. .--.|+.+-+. .-+...|...-.+..+ +.||.+. -.....++.+.|++.
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK----LAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchh
Confidence 888888876542 4332 12223332221 2345566666665555 5566432 334457889999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007878 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRP-TISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
++-.+++.+-+ ..|.+..+...+ +.+.|+. +++-+++. .++| +..+..++..+-...|++..|..-.+
T Consensus 281 Kg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 281 KGSKILETAWK---AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred hhhhHHHHHHh---cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999864 477776655444 3355543 32222222 3445 45666777788888999999999999
Q ss_pred HHhccCCCCchhHHHHHHHHh-hcCChHHHHHHHHHHHhCC
Q 007878 408 NLFKLDPNDSGNHVLLSNMFA-ATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~g 447 (586)
.+....|. ...|.+|+.+-. ..|+-.+++..+-+..+..
T Consensus 354 aa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 354 AAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 99999987 467888888765 4599999998888776643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.071 Score=48.26 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=128.2
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH-hcCCC-hHHHH-HHHHHHHHhCCCCChhHHHHH
Q 007878 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC-SDCSL-LQLGR-QLHGFLVRSGFDGNVSVCNGL 152 (586)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~~a~-~~~~~~~~~g~~~~~~~~~~l 152 (586)
...|+.-+..+++....++|..-+...-+-. .||.+ |...=..+ .+.|. +.-+. -+|.++.+. .| .-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lg--npqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LG--NPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cC--CcHHHH
Confidence 3456666777777777777766655543321 11210 00000000 11222 12222 233344332 11 235667
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC--Chh--------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007878 153 VDFYGKCNEVGLAKVVFDGIIDK--NDV--------SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 222 (586)
.+.|.-..-+++-...|+.-..+ .+. ..+.++..+.-.|.+.-.+.++++..+..-+.++.....+.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 76666666666666666543322 222 33456666666777777777777777765555666666677777
Q ss_pred hcccCcHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCH
Q 007878 223 ARIAGLELGRSVHAVAVKACVEGNIFVGS-----ALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHA 294 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 294 (586)
.+.|+.+.|...++...+..-..|....+ .....|.-.+++..|...|+++.. .|++.-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 77788888888777666543333333333 333345556677777777777664 3444445444444445777
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHH
Q 007878 295 DMALSSFEEMTSMRCEAVPNYVTLV 319 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~t~~ 319 (586)
.+|++..+.|.. ..|...+-+
T Consensus 303 ~DAiK~~e~~~~----~~P~~~l~e 323 (366)
T KOG2796|consen 303 KDALKQLEAMVQ----QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHhc----cCCccchhh
Confidence 777777777776 335544444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0038 Score=45.10 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG-KPELGRIAADNLFKLDP 414 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 414 (586)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666666677777777777777665 3334 4556777777777777 67888888888877776
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.02 Score=48.68 Aligned_cols=69 Identities=28% Similarity=0.257 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCccCC
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD-----VGIKKGA 452 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 452 (586)
.+...++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.++++++.. .|+.|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777788899999999999999999999999999999999999999999999998853 4776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=51.39 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=55.7
Q ss_pred CChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc----------------cCcHHHHH
Q 007878 175 KNDVSWCSMLVVYVQ-----NYEEENGCQMFLTARREGVEPKDFMISSVLSACARI----------------AGLELGRS 233 (586)
Q Consensus 175 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 233 (586)
+|..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444445555544443 244444555566666667766777777776665432 23456777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007878 234 VHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888887776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=54.71 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHHHH
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLLSN 425 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 425 (586)
|..-+..+.+.|++++|...|+.+ ...|+. ..+.-+...+...|++++|...|+.+.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555555554 222221 244455555666666666666666666655543 233334455
Q ss_pred HHhhcCChHHHHHHHHHHHh
Q 007878 426 MFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 426 ~~~~~g~~~~a~~~~~~m~~ 445 (586)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.71 Score=44.92 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HHhcCCHHHHHHHHHHhhhcc-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 007878 288 YAHQGHADMALSSFEEMTSMR-CEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAG 365 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 365 (586)
..+.|++.+|.+.|.+.+..+ ..+.|+...|.....+..+.|+.++|+.--+... .+.|. ...|..-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 455677777777777665511 1233444555555566666777777776666554 23332 122222223344455
Q ss_pred ChHHHHHHHHhC
Q 007878 366 LVDRAYEIIKEM 377 (586)
Q Consensus 366 ~~~~A~~~~~~m 377 (586)
++++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.079 Score=49.29 Aligned_cols=56 Identities=9% Similarity=-0.054 Sum_probs=37.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCh---hh---HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 007878 152 LVDFYGKCNEVGLAKVVFDGIIDKND---VS---WCSMLVVYVQNYEEENGCQMFLTARREG 207 (586)
Q Consensus 152 ll~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 207 (586)
....+.+.|++++|.+.|+.+....+ .. .-.++.+|.+.+++++|...|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34445667888888888877744221 11 1235577788888999998888887753
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0099 Score=58.67 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555566666666655553 444442 23555555555556666666666555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.049 Score=44.07 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=48.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 007878 183 MLVVYVQNYEEENGCQMFLTARREGVEPKD--FMISSVLSACARIAGLELGRSVHAVAVKACVEG--NIFVGSALVDMYG 258 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 258 (586)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++......+.+ +..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556677777777777777776654432 234445555666666666666666665543221 1111222233444
Q ss_pred hcCCHHHHHHHHhh
Q 007878 259 KCGSIQDAEIAFNK 272 (586)
Q Consensus 259 ~~g~~~~A~~~~~~ 272 (586)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 55555555555443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.03 Score=45.75 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
..++.++|.++++.|+++....+.+..-..|+.. -...+. ...+....|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~-----------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD-----------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc-----------cCCCCCCCCCHHHHHHHHHHHH
Confidence 3456666667777777776666665543211110 000000 1222456788888888888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007878 327 RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLL 361 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 361 (586)
..|++..|+++.+...+.|+++-+...|..|++-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888777777777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.2 Score=46.30 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=29.1
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHH
Q 007878 384 SVWGALLNA--CRVYGKPELGRIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 384 ~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
..|.-+|-+ ....|.++.|.+..-.+...+ |+ ...|..|+-+-+....+.-.-+.|
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP-AEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HHHHHHHHHHHhhhhhhhhhHHHH
Confidence 344444444 455678888877665555432 33 456666655444443343333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.31 Score=49.91 Aligned_cols=222 Identities=12% Similarity=0.037 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCCCchHHHHHH--HHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007878 13 FPCLFKASSALHIPVTGKQLH--ALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~--~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
++..=++|.+-+++.--+-+. +.+.+.|-.|+... +...++-.|.+.+|.++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 333444555555444333332 23444554455443 33445556677777766643 45
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007878 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
.-..|+++|..|+-- -..+-+...|+.++-+.+.+.-.+. ..+..--.+...++...|+.++|..+.-
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~ 727 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICG 727 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhh
Confidence 555666666665431 1223344455555544443322211 1111111233445555666666655432
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHH
Q 007878 171 GIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG 250 (586)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (586)
.+|=.+-+.++-+++- ..+..+...+..-+-+...+..|.++|..|-..
T Consensus 728 ------------------d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 728 ------------------DHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred ------------------cccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 1222222222222221 122333433333444555666777777665332
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHH
Q 007878 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 298 (586)
.+++++....+++++|..+-++.++--...|-.-..-++...++++|.
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH
Confidence 246777778888888888888887622222333333344444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.048 Score=52.73 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..++..|..++.+.+++..|+...++.++++|+|.-..+.-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 356777888899999999999999999999999999999999999999999999999999986
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.045 Score=51.37 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWG 387 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~ 387 (586)
.|...+....+.|++++|...|+.+.+.+ |+ ...+-.+...|...|++++|...|+.+ ...|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444433345566777777777666542 33 235556666777777777777777666 11122 33455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 388 ALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+...+...|+.+.|...++++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 556667778888888888888888888754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.63 Score=42.05 Aligned_cols=177 Identities=12% Similarity=0.052 Sum_probs=78.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007878 183 MLVVYVQNYEEENGCQMFLTARREGVE--PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC 260 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (586)
....+.+.|++.+|.+.|+++...-.. --......+..++.+.|+++.|...++..++.-+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344556677777777777777654211 111233445566666777777777776666654432222222222222111
Q ss_pred CCHHHHHHHHhhCCCCC-------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007878 261 GSIQDAEIAFNKMPERN-------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 261 g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
...... + ...+| ...+..++.-|=......+|...+..+... .-. .-..+..-|.+.|.+..
T Consensus 91 ~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-----la~-~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-----LAE-HELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHCTT-HHH
T ss_pred HhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHcccHHH
Confidence 111111 0 01111 112333444444444455554444443320 000 11124455677777777
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHH
Q 007878 334 GMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRA 370 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 370 (586)
|..-++.+++++.-.+. ......++.+|.+.|..+.|
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777766422222 23445566666666666543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.17 Score=45.89 Aligned_cols=128 Identities=7% Similarity=-0.070 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH-----HHH
Q 007878 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN-----GLV 153 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~ll 153 (586)
-+.++..+.-.|.+.-.+.++.+.++...+-++.-.+.+.+.-.+.||.+.|...|+...+..-..|..+.+ ...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345555666667777777777777776555566666667766677777777777777665443223333333 333
Q ss_pred HHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 007878 154 DFYGKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206 (586)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (586)
..|.-.+++.+|...|++++.. |++.-|.-.-+..-.|+..+|++.+..|+..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455556777777777766543 3444454444555567777777777777663
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0094 Score=38.48 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
.+|..+..++...|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788889999999999999999999999999888877653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.3 Score=43.69 Aligned_cols=406 Identities=13% Similarity=0.078 Sum_probs=224.8
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCC------hhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHH--HcCC
Q 007878 21 SALHIPVTGKQLHALALKSGQIHD------VFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNA--VLGG 90 (586)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g 90 (586)
-+.+++.++..+|..+.+.- ..+ ....+.++++|... +++.....+....+ | ...|-.|..++ -+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 46789999999999998653 222 23456778888653 34444444433332 3 33455555543 4678
Q ss_pred ChhHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC----CChhHHHHH
Q 007878 91 RPKNAIDAFINLRRT--GGEP------------DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFD----GNVSVCNGL 152 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l 152 (586)
.+.+|++.+....+. +-.| |-.-=+..+.++...|++.+|+.++++++..=++ -+..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999998877654 3222 1112245666788999999999999988765443 688899998
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcC-------------------------------ChHHHHHHHH
Q 007878 153 VDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY-------------------------------EEENGCQMFL 201 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------------------------------~~~~A~~~~~ 201 (586)
+-++++.=-++--. .+...=...|--||..|.+.= +..--++++.
T Consensus 174 vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 174 VLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88877653222111 111111112333333332211 1111122222
Q ss_pred HHHHCCCCCCHhH-HHHHHHHHhcccCcHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 007878 202 TARREGVEPKDFM-ISSVLSACARIAGLELGRSVHAVAVKACVEG----NIFVGSALVDMYGKCGSIQDAEIAFNKMP-- 274 (586)
Q Consensus 202 ~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 274 (586)
.-...-+.|+... ...+...+.+ +.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-+.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2223334454322 2223333322 4455554444444332111 13455666666677788888877766544
Q ss_pred CCCee-------HHHHHHHHHH----hcCCHHHHHHHHHHhhhccCCCCCCHHHH-HHHH---HHhhccCC-HHHHHHHH
Q 007878 275 ERNLV-------CWNAIIGGYA----HQGHADMALSSFEEMTSMRCEAVPNYVTL-VCVL---SACSRAGA-VEKGMKIF 338 (586)
Q Consensus 275 ~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~g~~pd~~t~-~~ll---~a~~~~g~-~~~a~~~~ 338 (586)
+|+.. +-.++-+..+ ..-+...=+.+|+.... .+ .|..-. ..++ .-+-+.|. -++|++++
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs--~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS--YD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--hc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 23322 1111222222 11233344556666655 22 233221 1222 22344455 78889998
Q ss_pred HHhHHhcCCCC-ChHHHHHHH----HHHHhc---C---ChHHHHHHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHH
Q 007878 339 YSMTLKYGIKP-GAEHYACVV----DLLGRA---G---LVDRAYEIIKEMPMRP----TISVWGALLNA--CRVYGKPEL 401 (586)
Q Consensus 339 ~~~~~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~ 401 (586)
+.+.+ +.| |...-|.+. ..|..+ . ++-+-..++++.++.| +...-|.|..| +..+|++.+
T Consensus 404 k~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 404 KLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 88863 333 333333222 122221 1 1222344455555554 34456667766 678999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+...-.=+.+..| ++.+|..++-.+....++++|..++..+
T Consensus 481 c~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 481 CYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 9988888888999 7899999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.022 Score=41.62 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=47.4
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH
Q 007878 359 DLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 421 (586)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4577788888888888877 4444 4556677777788888899999999998888887665443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.083 Score=43.22 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHh--------------HHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---
Q 007878 315 YVTLVCVLSACSRAGAVEKGMKIFYSM--------------TLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--- 377 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 377 (586)
..++..++.++++.|+++....+.+.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344455555555555555554444332 111234455555555666665566666655555544
Q ss_pred -CCCCCHHHHHHHHHH
Q 007878 378 -PMRPTISVWGALLNA 392 (586)
Q Consensus 378 -~~~p~~~~~~~ll~~ 392 (586)
+++-+...|..|+.=
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333345555555544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.93 E-value=3.1 Score=44.77 Aligned_cols=195 Identities=11% Similarity=-0.041 Sum_probs=127.9
Q ss_pred ccHHHHHHHHh--cCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHH
Q 007878 11 FTFPCLFKASS--ALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNA 86 (586)
Q Consensus 11 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 86 (586)
..|..++++++ +.|..++|..+++.....+. .|..+...+-..|...|..++|..+++.... |+......+..+|
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay 120 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY 120 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 34677777754 78899999988887766553 4888999999999999999999999999876 5544444556678
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC-C---------hHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 007878 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS-L---------LQLGRQLHGFLVRSG-FDGNVSVCNGLVDF 155 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~ 155 (586)
++.+++.+--+.--+|.+. .+-+.+.|-++++...+.- . +..|....+.+++.+ ---+..=.-.-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 8877776543333333332 3335667767766654331 1 234555666665554 11111111222334
Q ss_pred HHhcCChHHHHHHHhc-----CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 007878 156 YGKCNEVGLAKVVFDG-----IIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 207 (586)
....|++++|..++.. ....+...-+--+..+...+++.+..++-.++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 5567889999999832 233344455566777888899999988888888876
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.018 Score=42.71 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=10.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHH
Q 007878 420 HVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+..++.+|...|++++|.+++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.6 Score=39.52 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCCchhHH
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEMP-----M--RPTI-SVWGALLNACRVYGKPELGRIAADNLFKL----DPNDSGNHV 421 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~ 421 (586)
|...-..|.+..++++|-..|.+-. . -|+. ..|-+.|-.+....++..|+..++.-.+. +|.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344455666666666655554431 0 1222 23444444555556777777777775553 356666677
Q ss_pred HHHHHHhhcCChHHHHHHH
Q 007878 422 LLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~ 440 (586)
.|+.+| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777766 557777666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.022 Score=42.24 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-------P-MRPT-ISVWGALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
..+|+.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|+..+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999999886 2 1133 5678888899999999999999999875
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.23 Score=46.34 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=48.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc---ccCcHHHHHHHHHHHHhCCCCchhHHHH
Q 007878 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR---IAGLELGRSVHAVAVKACVEGNIFVGSA 252 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (586)
|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++.. ...-.++..+++++++..+. |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 55566666666666666666666666655421 2233333333333321 12344555555555554433 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC
Q 007878 253 LVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~ 274 (586)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4444555555555555555444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.41 Score=43.25 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007878 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 334 (586)
+..-|.+.|.+..|..-++.+++.=.+..-.......++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455577788888888888888772111111123456677777777777644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.076 Score=51.16 Aligned_cols=257 Identities=12% Similarity=0.045 Sum_probs=148.2
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHH--H--hCC-CCChhHHHHHHHH
Q 007878 85 NAVLGGRPKNAIDAFINLRRTGGEPDLI----TFCAFLNACSDCSLLQLGRQLHGFLV--R--SGF-DGNVSVCNGLVDF 155 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~-~~~~~~~~~ll~~ 155 (586)
-+++.|+....+.+|+...+.|.. |.. .|+.|-++|.-.+++++|.+.|..=+ . .|- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 367788888888888888777643 333 34555566666777888887765321 1 110 0012223334444
Q ss_pred HHhcCChHHHHHHHhc-C------CCC--ChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHH--
Q 007878 156 YGKCNEVGLAKVVFDG-I------IDK--NDVSWCSMLVVYVQNYE--------------------EENGCQMFLTAR-- 204 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~-~------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 204 (586)
+--.|.+++|...-.+ + -.+ ....+..+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665433211 1 000 12233345555554443 233444443321
Q ss_pred --HCCC-CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 007878 205 --REGV-EPKDFMISSVLSACARIAGLELGRSVHAVAVK----ACVE-GNIFVGSALVDMYGKCGSIQDAEIAFNKMP-- 274 (586)
Q Consensus 205 --~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 274 (586)
+.|- -.....|..+-..|.-.|+++.|...|+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+.-.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 11223455666666677899999888865433 2211 124567778888889999999998887532
Q ss_pred -----CCC--eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc---CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 275 -----ERN--LVCWNAIIGGYAHQGHADMALSSFEEMTSMR---CEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 275 -----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
++. ..+..+|...|.-..++.+|+.++.+-.... ....-....+-+|..++...|..++|+.+...-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 3355667777877788889988876543310 0112245678889999999999999988766544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.21 Score=48.43 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
..++..|.-.|.+.+++.+|++.-+.. .. ++|.-....=..+|...|+++.|+..|+++++++|.|..+..-|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346677778889999999999888876 33 3567777777888999999999999999999999999888888887766
Q ss_pred hcCChHHH-HHHHHHHHhC
Q 007878 429 ATGRWEEA-DLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a-~~~~~~m~~~ 446 (586)
+..+..+. .++|..|-.+
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 66555444 7888888754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.11 Score=51.60 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA----EHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+...++.+..+|.+.|++++|+..|+...+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467888899999999999999999998864 46774 35888899999999999999999887
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.95 Score=37.97 Aligned_cols=88 Identities=9% Similarity=-0.000 Sum_probs=57.6
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007878 11 FTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
.....++..+...+........++.+++.+ ..++..+|.++..|++.. .++....++. ..+......+++.+.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 345567777777778888888888888776 467778888888888763 3444455542 223344445666666666
Q ss_pred ChhHHHHHHHHH
Q 007878 91 RPKNAIDAFINL 102 (586)
Q Consensus 91 ~~~~A~~~~~~m 102 (586)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.19 Score=40.35 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=66.0
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----chhHHHHHHHHhhcCCh
Q 007878 360 LLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPND----SGNHVLLSNMFAATGRW 433 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 433 (586)
+++..|+++.|++.|.+. .+- -..+.||.-..+++-+|+.++|+.-+++++++.-+. -..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888776 222 356778888888888888888888888888875322 23566667778888999
Q ss_pred HHHHHHHHHHHhCCC
Q 007878 434 EEADLVRKEMKDVGI 448 (586)
Q Consensus 434 ~~a~~~~~~m~~~g~ 448 (586)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999888888877663
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.2 Score=47.62 Aligned_cols=162 Identities=9% Similarity=0.006 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCC--C--ChH
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN---YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK--P--GAE 352 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~ 352 (586)
+|..+..++-+.-++.+++.+-+.-... .|..|. .....++..+....+.++++++.|+...+--.-. | ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3344444444444444444444333221 232231 1223334455555566666666666554321111 1 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhccC------C
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-------PMRPTIS-----VWGALLNACRVYGKPELGRIAADNLFKLD------P 414 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p 414 (586)
+|..|...|.+..++++|.-+..+. +++.=.. +...+.-+++..|....|.+..+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 5666666666666666654443332 2221111 12233445666677766766666665542 1
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 415 NDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 415 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
-.......++++|...|+.|.|..-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1223334566777777776666655554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=2.4 Score=38.43 Aligned_cols=194 Identities=18% Similarity=0.134 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMP-----ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
...+......+...+.+..+...+.... ......+..+...+...+....+.+.+..... ....+ .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA--LDPDP-DLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--CCCCc-chHHHHH
Confidence 3455556666666676666666665543 13334455555556666667777777777665 22111 1122222
Q ss_pred HH-HhhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHH
Q 007878 322 LS-ACSRAGAVEKGMKIFYSMTLKYGIKP----GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT--ISVWGALLNAC 393 (586)
Q Consensus 322 l~-a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~ 393 (586)
.. .+...|+++.|...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 22 56777777777777777642 222 2333444444466677788888777776 33333 56677777777
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
...++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77778888888888888887765555666666666667788888777776653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.17 Score=46.46 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=81.3
Q ss_pred HHHHHHhhCC--CCCeeHHHHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC--------
Q 007878 265 DAEIAFNKMP--ERNLVCWNAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG-------- 329 (586)
Q Consensus 265 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g-------- 329 (586)
..++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+ .|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 3456677776 57888899988888754 557777778889999 899999999999999876553
Q ss_pred --------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007878 330 --------AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 330 --------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
+-+-++.++++| +.+|+.||.++-..|++++++.+..-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234578899999 56799999999999999999988643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.97 E-value=4.3 Score=40.31 Aligned_cols=352 Identities=12% Similarity=0.023 Sum_probs=163.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCC----CCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007878 15 CLFKASSALHIPVTGKQLHALALKSGQ----IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
..+.++...|++.+|+.++++++..=+ ..+..+||.++-++++.=-++ +-+.+...=..-|--+|-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHH
Confidence 345566778888888888887775533 367788888777776532111 111121111112333444443221
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC--CChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 007878 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC--SLLQLGRQLHGFLVRSGFDGNV-SVCNGLVDFYGKCNEVGLAKV 167 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~ 167 (586)
..++.-.-..+.|...-+..++.-..-. .++.--.++++.-...-+.|+- -+...|+.-+.+ +.+++..
T Consensus 209 ------~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 ------HAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred ------HHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 1111100011334444444444433222 1223333444433333344442 233344444444 3333333
Q ss_pred HHhcC--------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHH-------HHHHHh-c---ccCc
Q 007878 168 VFDGI--------IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISS-------VLSACA-R---IAGL 228 (586)
Q Consensus 168 ~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~-~---~~~~ 228 (586)
+-+.+ .+.=+.++..++...++.++..+|-+.+.-+.. +.|+...-.- +-+..+ . ..++
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 32222 222345777888888888888888887766654 2343321111 111111 0 0112
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCC-HHHHHHHHhhCCC---CCeeHHHHHHH----HHHhc---CCH
Q 007878 229 ELGRSVHAVAVKACVEGNIFVGSAL---VDMYGKCGS-IQDAEIAFNKMPE---RNLVCWNAIIG----GYAHQ---GHA 294 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~----~~~~~---g~~ 294 (586)
..-..++..+...++..- ....-| ..-+.+.|. -++|.++++.+.+ -|...-|.+.. .|.+. ...
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 222333444433333211 111111 222444454 5667777766653 33333333221 12211 123
Q ss_pred HHHHHHHHHhhhccCCCCCCHH----HHHHHHH--HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007878 295 DMALSSFEEMTSMRCEAVPNYV----TLVCVLS--ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~----t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
.+-+.+-+-+.+ .|+.|-.+ .-|.+.. -+...|++.++.-+-..+. .+.|++.+|..+.-.+....+++
T Consensus 438 ~rLlkLe~fi~e--~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 438 PRLLKLEDFITE--VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred HHHHHHHHHHHh--cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHH
Confidence 333333333334 55555322 2222222 2345677777766555553 45777777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHH
Q 007878 369 RAYEIIKEMPMRPTISVWGA 388 (586)
Q Consensus 369 ~A~~~~~~m~~~p~~~~~~~ 388 (586)
+|.+++..+| |+..++++
T Consensus 513 eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 513 EAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHhCC--CchhhHHH
Confidence 7777777775 45555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.94 E-value=6.2 Score=41.97 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=61.3
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCC---ChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHH
Q 007878 20 SSALHIPVTGKQLHALALKSGQIH---DVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAI 96 (586)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 96 (586)
+...+.+++|..+-.... |..| -..++...|+.+.-.|++++|-++.-.|...+..-|---+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 344455555555433332 2333 23467778888888888888888888888878888887777777777665433
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhc
Q 007878 97 DAFINLRRTGGEPDLITFCAFLNACSD 123 (586)
Q Consensus 97 ~~~~~m~~~g~~p~~~t~~~ll~~~~~ 123 (586)
.+ +.....+.+...|..+|..+..
T Consensus 444 ~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 444 PY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---CCCCCcccCchHHHHHHHHHHH
Confidence 32 2221122345567777777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.64 Score=46.43 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=54.8
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 368 DRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 368 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+|.++.++. ... -|......+..+....++.+.|...|+++..++|+.+..+...+..+.-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3455555444 222 35566666666666677788888888888888888888888888888888888888888777544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.27 Score=41.67 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH----HhcCCCCChHH
Q 007878 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT----LKYGIKPGAEH 353 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 353 (586)
..++..+...|++++|+.+.+.+.. .. +-|...|..++.+|...|+...|.+.|+.+. +..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445556666777777777777666 21 2356666777777777777777777665543 23466676554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.2 Score=45.96 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=76.1
Q ss_pred HHHHHhccCC--CCCcccHHHHHHHHHcC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------
Q 007878 63 DADKMFDEMP--ERNLATWNAYISNAVLG-----GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL--------- 126 (586)
Q Consensus 63 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--------- 126 (586)
..++.|...+ ++|-.+|-+.+..+... +.++=....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888898888877643 5566666778899999999999999999998755432
Q ss_pred -------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007878 127 -------LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 127 -------~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
-+=+..++++|...|+-||-.+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12366788888888888888888888888877765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.64 Score=47.28 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=83.2
Q ss_pred HHhcCCHHHHHHHHH--HhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007878 288 YAHQGHADMALSSFE--EMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~--~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 365 (586)
....|+++++.+..+ ++. ..+ | ..-.+.++.-+-+.|..+.|+++-..-.. -.+...++|
T Consensus 271 av~~~d~~~v~~~i~~~~ll---~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg 332 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL---PNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLG 332 (443)
T ss_dssp HHHTT-HHH-----HHHHTG---GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT
T ss_pred HHHcCChhhhhhhhhhhhhc---ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcC
Confidence 445677877776665 222 122 2 34466777777888888888877543322 235566788
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 366 LVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 366 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+++.|.++.++.. +...|..|......+|+.+.|+..+.+. .-+..|+-.|...|+.+.-.++.+....
T Consensus 333 ~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888776653 7778888888888889998888888875 3466677778888888777777766666
Q ss_pred CC
Q 007878 446 VG 447 (586)
Q Consensus 446 ~g 447 (586)
+|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.39 Score=44.27 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVD 359 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 359 (586)
|+.-+.. .+.|++.+|...|...++...+-.-....+-.|..++...|+++.|..+|..+.++++-.|. +..+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5544433 34566777777777766621111111234445666777777777777777766665544444 245555555
Q ss_pred HHHhcCChHHHHHHHHhC
Q 007878 360 LLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m 377 (586)
...+.|+.++|...|++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555555555555555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.50 E-value=5.7 Score=44.31 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=44.5
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
.+.+|-.+|++.+|+.+..++.. +-.--..+-..|+.-+...+++-+|-++..+..-.|. -.+..+++...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHH
Confidence 44566666666666666655521 1111122235566666677777777777666532222 2233344555666
Q ss_pred HHHHHHHHHh
Q 007878 401 LGRIAADNLF 410 (586)
Q Consensus 401 ~a~~~~~~~~ 410 (586)
+|.++.....
T Consensus 1044 eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1044 EALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcc
Confidence 7766665544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.46 E-value=3.2 Score=38.86 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=62.6
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007878 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
....|+..+|..+|+..... . .-+...-..+..+|...|+.+.|..++..+-.+ --.........-|..+.+....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--A-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--C-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34456666666666655551 1 012333445555666666666666666555321 0000111111223334444433
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCchhHHHHHHHHhhcC
Q 007878 368 DRAYEIIKEMPMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD--PNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 368 ~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 431 (586)
.+..++-++....| |...-..|...+...|+.+.|.+.+-.+++.+ -.+...-..|+.++.-.|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333332333 33344444555555566665555544444432 233444445555444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.42 E-value=5.8 Score=39.35 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=85.4
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHH-H
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE-AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY-A 355 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~ 355 (586)
..+|...+..-.+..-.+.|..+|-+..+ .+ +.++...+++++.-++ .|+...|..+|+.-... -||...| +
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk--~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRK--EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhc--cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 34566666666666667777778877777 55 5566777777776443 56777777777765543 2343333 3
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM--PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
-.+.-+.+.++-+.|..+|+.. .+..+ ..+|..+|.--...|+...+..+-+++.+.-|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 4555666777777777777754 22222 4567777777777777777777777777776653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.6 Score=35.29 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHH
Q 007878 217 SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 217 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 296 (586)
.++..+...+.......+++.+.+.+. .+....+.++..|++.+ .++..+.+.. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 344444444555555555555555543 45556666666666543 2233333331 1222223334444444444445
Q ss_pred HHHHHHHh
Q 007878 297 ALSSFEEM 304 (586)
Q Consensus 297 A~~~~~~m 304 (586)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 54444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=3.1 Score=41.74 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=102.2
Q ss_pred eHH--HHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhc---------cCCHHHHHHHHHHh
Q 007878 279 VCW--NAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSR---------AGAVEKGMKIFYSM 341 (586)
Q Consensus 279 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~---------~g~~~~a~~~~~~~ 341 (586)
..| ...+.|.... -..+.|+.+|.+.... +.+.|+ ...|..+..++.. .....+|.++-+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 556 5556555441 1356788889988832 235566 3444444333221 23455666766666
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007878 342 TLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 342 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
++ +.| |......+..++.-.|+++.|..+|++. .+.||. .+|......+.-.|+.++|.+.+++.++++|....
T Consensus 331 ve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 331 SD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred Hh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 53 334 4666677777778888899999999998 566764 55666666677899999999999999999997554
Q ss_pred hHH--HHHHHHhhcCChHHHHHHHH
Q 007878 419 NHV--LLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 419 ~~~--~l~~~~~~~g~~~~a~~~~~ 441 (586)
.-. ..+.+|... ..++|.+++-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 433 334455544 4566666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.25 E-value=4.6 Score=39.76 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=24.4
Q ss_pred CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC
Q 007878 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKAC 242 (586)
Q Consensus 210 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (586)
.|-..+.+++.++.-.|+.++|.+..+.+.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 355566777777777888888888888887664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.6 Score=36.32 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=30.9
Q ss_pred HhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 362 GRAGLVDRAYEIIKEM----PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+.|++++|.+.|+.+ |..| ..-.--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3455556665555555 2111 223344455666666666666666666666666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.3 Score=34.56 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC
Q 007878 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (586)
.+.-+..+++.|+-++--++++++.+. -.+++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 445567777888888888888877653 3677777778888888888888888888888777754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.2 Score=43.53 Aligned_cols=157 Identities=11% Similarity=0.010 Sum_probs=93.7
Q ss_pred HHHHcCCChhHHHHHHH--HHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007878 84 SNAVLGGRPKNAIDAFI--NLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 84 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
....-.++++++.+... ++.. .+ ...-.+.++.-+-+.|..+.|.++-. |.. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34455678888766664 1111 11 23446777777888888888887643 221 22345568899
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 007878 162 VGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241 (586)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (586)
++.|.++-++.. +...|..|.....+.|+++-|.+.|++..+ +..++-.+...|+.+.-.++.......
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988877665 567899999999999999999888876543 455555666677777766666666555
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007878 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNK 272 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 272 (586)
|- +|....++...|++++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 33344445555666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.8 Score=34.86 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhccCCCCc
Q 007878 399 PELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~ 417 (586)
...|...|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5567777777777777754
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=12 Score=40.38 Aligned_cols=76 Identities=8% Similarity=-0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc
Q 007878 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA 226 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 226 (586)
-...+..+.+.+++....+++.. ...+...-.....+....|+.++|....+.+=..| .........++..+.+.|
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 33444455566666666663322 22344344445556666676666665555554433 222334444554444333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.53 E-value=3.8 Score=42.39 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-----HHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCC
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-----VTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPG 350 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~ 350 (586)
....+++...-.|+-+.+++.+.+..+. .++.-.. .+|..++..++. ....+.|.++++.+.++ -|+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~ 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPN 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCC
Confidence 3344555556667777777777776552 3332221 233344433333 45788899999999765 577
Q ss_pred hHHHHH-HHHHHHhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH-H
Q 007878 351 AEHYAC-VVDLLGRAGLVDRAYEIIKEMPM-R-----PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV-L 422 (586)
Q Consensus 351 ~~~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~ 422 (586)
...|.. -.+.+...|++++|++.|++.-. + .....+--+...+....++++|...+.++.+...-+...|. .
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 655543 34567778999999999997621 1 12344555666778889999999999999997655445554 4
Q ss_pred HHHHHhhcCCh-------HHHHHHHHHHHh
Q 007878 423 LSNMFAATGRW-------EEADLVRKEMKD 445 (586)
Q Consensus 423 l~~~~~~~g~~-------~~a~~~~~~m~~ 445 (586)
.+..+...|+. ++|.++|++...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 45556778888 888888887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.15 Score=30.49 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777778888888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.73 Score=37.14 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=57.6
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-C-CHH---HHHHHHHHHHHcC
Q 007878 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-P-TIS---VWGALLNACRVYG 397 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p-~~~---~~~~ll~~~~~~~ 397 (586)
+.+..|+++.|++.|.+... -.+.....||.-.+++.-.|+.++|++-+++. .+. | .-. .|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667777777777777653 22334667777777777778777777777665 111 1 111 2222233467788
Q ss_pred CHHHHHHHHHHHhccCCC
Q 007878 398 KPELGRIAADNLFKLDPN 415 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~ 415 (586)
+.+.|..-|+.+-+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888777654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.22 Score=29.56 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 385 VWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
.|..+...+...|++++|+..++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666667777777777777777777777754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=6.1 Score=35.62 Aligned_cols=197 Identities=15% Similarity=0.077 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe-eHHHHHHH-H
Q 007878 213 FMISSVLSACARIAGLELGRSVHAVAVKA-CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL-VCWNAIIG-G 287 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~-~ 287 (586)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555555444432 2222344455555556666666677766666553 221 22333333 6
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 007878 288 YAHQGHADMALSSFEEMTSMRCEAVP----NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLG 362 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 362 (586)
+...|+.+.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 140 LYELGDYEEALELYEKALE----LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh----cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHH
Confidence 7778888888888888744 223 2334444444466778888888888888643 222 3567777788888
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 363 RAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 363 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
..+.+++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888888877 44444 445555555555667789999999998888876
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.6 Score=40.04 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHH----HHHHHhhccCCHH
Q 007878 260 CGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLV----CVLSACSRAGAVE 332 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~----~ll~a~~~~g~~~ 332 (586)
.|+..+|-..++++.+ .|..+|+--=.+|.-+|+.+.-...++++..+ ..||...|. .+.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4555555555555543 35556666666666666666666666665541 223332221 2223344556666
Q ss_pred HHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 333 KGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+|.+.-++..+ +.| |.-.-.++...+.-.|++.++.++..+-
T Consensus 193 dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66665555432 222 2333344555555566666666665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.14 E-value=6.2 Score=39.85 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHHHHH
Q 007878 319 VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP-M-RPT--ISVWGALLNACR 394 (586)
Q Consensus 319 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~ 394 (586)
..+..++-+.|+.++|++.|+++.+.+...-...+...|+..|...+.+.++..++.+.. + -|. ...|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 356667778899999999999998754322335567789999999999999999998873 1 133 345666554444
Q ss_pred HcCCH---------------HHHHHHHHHHhccCCCC
Q 007878 395 VYGKP---------------ELGRIAADNLFKLDPND 416 (586)
Q Consensus 395 ~~~~~---------------~~a~~~~~~~~~~~p~~ 416 (586)
..++. ..|.++..++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 33331 23557778887777653
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.13 E-value=1 Score=41.54 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=65.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK-PGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT-ISVWGALL 390 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll 390 (586)
.|+..+. +.+.|++..|...|...+++|.-. -....+--|.+.+...|++++|...|..+ |..|- +...--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4665554 446677888888888887654211 11334555777788888888887777766 22222 24555566
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007878 391 NACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
......|+.++|...++++.+..|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6667777777777777777777776543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.4 Score=41.68 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=116.3
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHHhcC
Q 007878 290 HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV----VDLLGRAG 365 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g 365 (586)
-.|+..+|...++++.+ ..+.|...+...=.+|...|+.+.-...++.+.. ...||...|..+ .-++..+|
T Consensus 115 ~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 47888899999999987 3566778888888899999999999999988864 346676555444 34456899
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHHHH
Q 007878 366 LVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPN----DSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 366 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
-+++|++.-++. .+.| |...-.++...+-..|+..++.++..+-...-.. -...|-..+-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999887 5554 5556667777788899999999887765543221 122344455556777999999999
Q ss_pred HHHHHhCCCccCCc
Q 007878 440 RKEMKDVGIKKGAG 453 (586)
Q Consensus 440 ~~~m~~~g~~~~~~ 453 (586)
|+.=.-+.+.++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 99866555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=7.7 Score=35.68 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 007878 288 YAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~ 306 (586)
|.+.|.+..|..-+++|++
T Consensus 177 Y~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhcChHHHHHHHHHHHh
Confidence 4455555555555555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=7.8 Score=35.67 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 390 LNACRVYGKPELGRIAADNLFKLDPNDS---GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..-|.+.|.+..|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3447888999999999999998766544 3555677889999999999988776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.85 Score=38.79 Aligned_cols=84 Identities=8% Similarity=-0.094 Sum_probs=35.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007878 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
-+.|++++|..+|+-+...+. -|..-+..+..++-..+++++|...|......+.. |+...--...+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 345555555555555443221 11222222333333344555555555444433321 2222222344555555555555
Q ss_pred HHHhhC
Q 007878 268 IAFNKM 273 (586)
Q Consensus 268 ~~~~~m 273 (586)
..|+..
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.66 E-value=3.4 Score=41.61 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCC
Q 007878 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPN--DSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGA 452 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 452 (586)
..+=..|..++.+.|+.++|++.++.+.+..|. +......|+..+...+++.++..++.+--+...++..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 334455666677778888888877777766654 3456667777777778888887777775443343433
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.56 E-value=12 Score=37.24 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHH-HH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTL-VC 320 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~-~~ 320 (586)
..++..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++. |+..-|..+|+--.. --||...| .-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~----~f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL----KFPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH----hCCCchHHHHH
Confidence 45677778888888889999999988764 788899999998774 777889999987766 23554443 45
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVY 396 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 396 (586)
.+.-+...++-+.|..+|+..+.+ +..+ ...|..+|+-=..-|++..|..+=++| ..-|...+-..+.+-|...
T Consensus 472 yl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 666778889999999999976653 3333 678999999888999999888877777 3345555555555554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.37 E-value=10 Score=36.09 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=11.5
Q ss_pred cCCChHHHHHHHHHHHHh
Q 007878 123 DCSLLQLGRQLHGFLVRS 140 (586)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~ 140 (586)
+.|+.+.|...+.++...
T Consensus 5 ~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhCCHHHHHHHHHHhhhH
Confidence 456777777777666543
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=7.4 Score=34.70 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=26.3
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..+|..|+.-|...|..++|..+|+......
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3578889999999999999999999887643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.57 E-value=1 Score=42.21 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.++..++..+...|+.+.+...++++...+|-+...|..+..+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777777788888888888888888888888888888888888888888888888765
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.85 Score=39.80 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007878 361 LGRAGLVDRAYEIIKEM-PMRP------TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
+.+.|++++|..-|... ..-| -.+.|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45566666666666554 1111 2344555556678889999999999999999998888888888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 007878 434 EEADLVRKEMKDVG 447 (586)
Q Consensus 434 ~~a~~~~~~m~~~g 447 (586)
++|..=++++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.03 E-value=10 Score=40.72 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+-..|+.+|.+.++.+.-.++++..
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcC
Confidence 3344444444444444444444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.6 Score=35.22 Aligned_cols=132 Identities=8% Similarity=0.011 Sum_probs=63.1
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHH--H
Q 007878 78 TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLI-TFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS-VCNGL--V 153 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l--l 153 (586)
.|.+.+. +++.+..++|+.-|..+.+.|..-=+. ..-......+..|+...|...|.++-...-.|... -..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444332 345566666666666666554321000 01111122445566666666666655443223222 11111 1
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 007878 154 DFYGKCNEVGLAKVVFDGIIDK-ND---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEP 210 (586)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 210 (586)
-.+...|.+++.....+-+..+ ++ ..-.+|.-+-.+.|++.+|.+.|..+....-.|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1234566666666655554321 21 122345555566777777777777665543344
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.79 E-value=3.5 Score=39.53 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHhhCCC-------CCeeHHHHHHHHHHhcCC----HHHHHHHHHHhhhccCCCCCC-H-HHHHHHHHHhhccCC
Q 007878 264 QDAEIAFNKMPE-------RNLVCWNAIIGGYAHQGH----ADMALSSFEEMTSMRCEAVPN-Y-VTLVCVLSACSRAGA 330 (586)
Q Consensus 264 ~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~g~~pd-~-~t~~~ll~a~~~~g~ 330 (586)
..|..+|+.|.+ ++...+.+|+.. ..++ .+.+..+|+.+.+ .|+..+ . .....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~--~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLAD--AGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHhccccch
Confidence 345555555553 344445444433 1222 3566777777777 565543 3 333444433332222
Q ss_pred --HHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007878 331 --VEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 331 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
+.++.++++.+.+. |+++...+|..+.-
T Consensus 196 ~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 196 EKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 44778888888665 88888877776543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.51 E-value=50 Score=40.38 Aligned_cols=308 Identities=14% Similarity=0.065 Sum_probs=168.1
Q ss_pred HHHhcCCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-CCCCChhhHHHHHHHHHHcCCh
Q 007878 119 NACSDCSLLQLGRQLHGFL----VRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDG-IIDKNDVSWCSMLVVYVQNYEE 193 (586)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 193 (586)
.+-.+.+.+..|...++.- .+. ......+-.+...|+.-++++....+... ...+ +....|......|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 3444556666777666652 111 11233444555588888888777666652 3322 233455666778999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhh
Q 007878 194 ENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFV-GSALVDMYGKCGSIQDAEIAFNK 272 (586)
Q Consensus 194 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~ 272 (586)
..|..-|+.+.+.+ ++...+++-++......+.++......+-..... .+.... ++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999998754 3336678877777777777776665443333322 222222 3333444567778777776666
Q ss_pred CCCCCeeHHHHH-HH-HHHhcC--CHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH---------
Q 007878 273 MPERNLVCWNAI-IG-GYAHQG--HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFY--------- 339 (586)
Q Consensus 273 m~~~~~~~~~~l-i~-~~~~~g--~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~--------- 339 (586)
..+..+|.+. +. .+.+.. +.-.-.++.+.+++ .-+. =+.+|+..|.+..+.++.-
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~--~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE--LVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHH--Hhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5666677665 22 222221 11111123333332 1111 1222333322222222211
Q ss_pred -HhHHhcCCCCChHH------HHHHHHHHHhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHHcCCHHHHH
Q 007878 340 -SMTLKYGIKPGAEH------YACVVDLLGRAGLVDRAYEIIKEM----PMRP-----TISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 340 -~~~~~~~~~p~~~~------~~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
......+..++..+ |..-+..-....+..+-+--+++. ..+| -..+|-.....++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111133333221 111111111111122222222221 1122 2467888899999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 404 IAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
...-++.+..+ +..+.-.+..+...|+...|..++++..+...
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99888888875 46888899999999999999999999886543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.44 E-value=16 Score=34.46 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=66.6
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeeHHH---HHHHHHHhcCCHHH
Q 007878 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER-NLVCWN---AIIGGYAHQGHADM 296 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~---~li~~~~~~g~~~~ 296 (586)
.....|+...+..++......... +...--.+...|...|+.+.|..++..++.. ....|- +-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777788877777776554 3455556788888888888888888888741 111121 22333333333333
Q ss_pred HHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007878 297 ALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333322 13 344444555566666777776665554443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=17 Score=34.65 Aligned_cols=80 Identities=10% Similarity=-0.084 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcC-CHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG-HADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
+..+-...+.++++.|+.+....+...+..+|...-..-+.++.+.+ ...++...+..+.. .+|...-...+.+
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-----D~~~~VR~~A~~a 215 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-----DKNEEIRIEAIIG 215 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-----CCChHHHHHHHHH
Confidence 34444444555555554332222222233333333333333333332 12234444444433 1344444444455
Q ss_pred hhccCC
Q 007878 325 CSRAGA 330 (586)
Q Consensus 325 ~~~~g~ 330 (586)
+.+.|+
T Consensus 216 Lg~~~~ 221 (280)
T PRK09687 216 LALRKD 221 (280)
T ss_pred HHccCC
Confidence 555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.28 E-value=19 Score=38.71 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 007878 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 124 (586)
+...|- +|--+.|.|++++|.++..+... ........|...+..+...
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 333443 44455666666666666644432 2333445555566665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.27 E-value=21 Score=35.53 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHhhCCC----CCeeHHHHHHHHHH-hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007878 260 CGSIQDAEIAFNKMPE----RNLVCWNAIIGGYA-HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 334 (586)
.|+.++|.+.+..+.. +....|-+|+.+-. ...+..+|+++|+...-.-.|--..+....--+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 6899999999998864 45667777777644 456799999999988762233222334455555667889999999
Q ss_pred HHHHHHhHHhcCCCCChHHHH-HHHHHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007878 335 MKIFYSMTLKYGIKPGAEHYA-CVVDLLGR---AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 335 ~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
..+-.....+|.-.|=...|. .+...+.+ ....+.-..++..|.-.--...|..+...-...|+.+.|....+++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 888877777766555433332 23333333 33445556666666433345688888888999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHh-----hcCChHHHHHHHHHHHhC
Q 007878 411 KLDPNDSGNHVLLSNMFA-----ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~ 446 (586)
.+... ...-...+..|. -..+.+++.+.++.+-..
T Consensus 285 ~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 285 KLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 98633 222333333343 344567777766665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.64 Score=28.23 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 419 NHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
++..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888999999999999988854
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.16 E-value=16 Score=36.19 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 381 PTISVWGALLNACRVYGKPELGRIAADNLFKLDP----NDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
....+|..+...+++.|+++.|...+.++....+ ..+.....-+..+...|+.++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3557889999999999999999999999988652 2456667778889999999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.82 E-value=27 Score=36.25 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=122.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPER---NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+..+|+..++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|-.++.+..+-...-.|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 4667888888889999999999999987643 223455555555555888888888877665211122333333333
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGA-EHYACVVDLLGRAGLVDRAY---EIIKEM-PMRPTISVWGALLNA----- 392 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~----- 392 (586)
-+-..|++..|..+++.+..+ . |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.--
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 345678999999999999765 3 663 33344566777888888887 444443 222232233322222
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007878 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 445689999999999999999999999999888776655
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.48 E-value=29 Score=36.06 Aligned_cols=348 Identities=9% Similarity=0.032 Sum_probs=165.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007878 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF-CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLV 153 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 153 (586)
+...|+.+|..--...+.+.+...++.++.. .|..+-| .....-=.+.|..+.+.++|++.+.. ++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4456777765544445555556666666542 4554433 22233334567777777777776654 455555555555
Q ss_pred HHHH-hcCChHHHHHHHhcCCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--
Q 007878 154 DFYG-KCNEVGLAKVVFDGIID------KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR-- 224 (586)
Q Consensus 154 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 224 (586)
.... ..|+.+...+.|+.... .+...|...|.--...+++.....++++.++. | ...|+....-+.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHH
Confidence 4433 34566666666665432 23456777776666777777777777777652 1 1112222111111
Q ss_pred -------ccCcHHHHHHHHHHHHh----CCCCchhHHHHHHHHHH-hcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcC
Q 007878 225 -------IAGLELGRSVHAVAVKA----CVEGNIFVGSALVDMYG-KCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG 292 (586)
Q Consensus 225 -------~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 292 (586)
....+++.++-...... ...+.......-++--. ..+.++++.....+. ....-..+...-
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-------~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI-------VSIHEKVYQKSE 269 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-------HHHHHHHHHhhH
Confidence 11122222222111110 00000011111110000 011111111111110 000111122222
Q ss_pred CHHHHHHHHHHhhhcc-CCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007878 293 HADMALSSFEEMTSMR-CEAVP----NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 293 ~~~~A~~~~~~m~~~~-~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
...+....|+.-.+.. ..++| +..+|...+.--...|+.+...-+|+.... .+.-=...|-..+.-....|+.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCch
Confidence 2333333333333210 01222 345677777777777787777777776642 1111134455555555556777
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007878 368 DRAYEIIKEM-P-MRPTISVWGALLNA-CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 368 ~~A~~~~~~m-~-~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
+-|..++... . ..|+......+-.+ +-..|+...|..+++.+.+.-|.....-..-++...+.|+.+.+..
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 7777666654 1 11222222222222 3345688888888888877666655555555666677777777773
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.8 Score=36.73 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=28.2
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..++.+.+..++.-+.-+.|..+..-..-+..+...|+|.+|.++|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.24 E-value=13 Score=31.68 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=54.2
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRAGLVDRAYEIIKEMP-MRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
+.-.+.++.+++..+++.+. -+.|... .-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|....+-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34456678888888888774 4466532 22233445677888888888888883 3344455556666665554444
Q ss_pred HHHHHHHHHhccCC
Q 007878 401 LGRIAADNLFKLDP 414 (586)
Q Consensus 401 ~a~~~~~~~~~~~p 414 (586)
.=....+++.+.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44455555666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.24 E-value=14 Score=31.94 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=69.2
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007878 197 CQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276 (586)
Q Consensus 197 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 276 (586)
+++++.+.+.+++|+...+..++..+.+.|....-. +++..++-+|.......+-.+.. ....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 345556666777777777888888887777655433 33344444444333332222221 222222222222222
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007878 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
=-..+..++..+...|++-+|+++.+.... . +...-..++.+-.+.++...-..+|+-.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~--~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK--V----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--c----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223455566777778888888888776533 1 1122234555555566555444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.5 Score=39.71 Aligned_cols=76 Identities=9% Similarity=0.230 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHhHHHH
Q 007878 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGCQMFLTARR-----EGVEPKDFMISS 217 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 217 (586)
..++..++..+..+|+.+.+.+.++++.+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778889999999999999999888553 567899999999999999999999998865 467776665554
Q ss_pred HHHH
Q 007878 218 VLSA 221 (586)
Q Consensus 218 ll~~ 221 (586)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.84 E-value=9.4 Score=34.53 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=30.4
Q ss_pred CChHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 365 GLVDRAYEIIKEM-----PMRPTISVWGALLNA---CRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 365 g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.++++|+..++.. +.+.+...-.+++.+ -...+++.+|+.+|+++.....+++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3445555555544 222333334444443 3456788999999998887654443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.74 Score=27.28 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 385 VWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777776663
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.63 E-value=26 Score=34.51 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=39.2
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
....+|..++..+.+.|+++.|...+.++........+ +......-....-..|+.++|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456777777777777777777777776651100000 222333334445566777777777766654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.55 E-value=33 Score=35.55 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCC-CCCC-----hhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHH
Q 007878 82 YISNAVLGGRPKNAIDAFINLRRTG-GEPD-----LITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGNVSVCNG 151 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 151 (586)
++....-.|+-+.+++++.+-.+.+ +.-. ..+|..++..+.. ..+.+.+.+++..+.+. -|+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 3444445566667776666654321 2211 1123333333322 34556677777766665 344444332
Q ss_pred -HHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-
Q 007878 152 -LVDFYGKCNEVGLAKVVFDGIIDK-------NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC- 222 (586)
Q Consensus 152 -ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~- 222 (586)
-.+.+...|++++|.+.|++.... ....+--+.-.+.-..+|++|.+.|..+.+.. .-+..+|.-+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 234556667777777777654321 12223334555666677777777777776543 22333444333333
Q ss_pred hcccCc-------HHHHHHHHHHH
Q 007878 223 ARIAGL-------ELGRSVHAVAV 239 (586)
Q Consensus 223 ~~~~~~-------~~a~~~~~~~~ 239 (586)
...++. ++|.+++.++.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 334444 55555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.27 E-value=8.4 Score=36.97 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhc--CC----ChHHHHHHHHHHHHhC
Q 007878 93 KNAIDAFINLRRTGGEPDLITFCAFLNACSD--CS----LLQLGRQLHGFLVRSG 141 (586)
Q Consensus 93 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g 141 (586)
++.+.+++.|.+.|++-+.++|-+.+-.... .. ....+..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4556678888888888777777654433322 12 2455777777777663
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.24 E-value=26 Score=33.98 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HhHHHHHHHHHhcccCcHHHHHHHHHHHHhC-----CCCchhH
Q 007878 179 SWCSMLVVYVQNYEEENGCQMFLTARR-EGVEPK---DFMISSVLSACARIAGLELGRSVHAVAVKAC-----VEGNIFV 249 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 249 (586)
+|-.+..++-+..++.+++.+-+.-.. .|..|. .....++-.++...+.++++.+.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554433222 222231 1223345556666667777777776655421 2223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-------CCee------HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPE-------RNLV------CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~ 316 (586)
+-+|...|.+..++++|.-+..+..+ .|.. +.-.|.-++-..|+...|.+..++..+. .-..-|..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl-al~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL-ALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-HHHhCChH
Confidence 67777777777777766544333211 2221 1122334455556666666665555441 00112332
Q ss_pred HH----HHHHHHhhccCCHHHHHHHHHHh
Q 007878 317 TL----VCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 317 t~----~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
++ ..+...|-..|+.+.|+.-|+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22 23334444555555555544443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.22 E-value=2.1 Score=35.68 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.++.+++..++..+.-+.|+.+..-..-+..+...|+|++|.++|+...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5667777777777777777777777777777777777777777777776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.93 E-value=53 Score=37.21 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=100.3
Q ss_pred HHHHcCChHHHHHHHHHHHHC-----CCCCCHh--HHHHHHHHHhccc--CcHHHHHHHHHHHHhC--------CCCchh
Q 007878 186 VYVQNYEEENGCQMFLTARRE-----GVEPKDF--MISSVLSACARIA--GLELGRSVHAVAVKAC--------VEGNIF 248 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~--t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--------~~~~~~ 248 (586)
+-..+.++.+=+-+++++++. ..+.|.+ -|...+..++..| -++++..+ +.+++ ..|+..
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~---I~kh~Ly~~aL~ly~~~~e 936 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNY---IKKHGLYDEALALYKPDSE 936 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHH---HHhcccchhhhheeccCHH
Confidence 334566777777777776632 1222222 2444555555555 34444333 22332 234444
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHH--HHHHH
Q 007878 249 VG----SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVT--LVCVL 322 (586)
Q Consensus 249 ~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t--~~~ll 322 (586)
.+ .+..+-+...+.+++|.-.|+..-+ ..--+.+|...|++.+|+.+-.++.. . -|... --.|.
T Consensus 937 ~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~--~---~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 937 KQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE--G---KDELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC--C---HHHHHHHHHHHH
Confidence 43 4444444556777777777766543 12246677788888888888877654 1 23322 24667
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
.-+...++.-+|-++..+... .| ..-+..|+++..+++|..+.....
T Consensus 1007 s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 778888888888888876643 22 234567788888999988877663
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=26 Score=33.46 Aligned_cols=137 Identities=7% Similarity=-0.008 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007878 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALV 254 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 254 (586)
+..+=...+.++.+.++ ++|+..+..+.. .+|...-...+.++.+.+ .-..+...+..+. ..++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHH
Confidence 33333344455555554 445555555554 234444444555555442 1234444444444 234566666677
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007878 255 DMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
.++++.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+ . .||...-...+.+|.
T Consensus 214 ~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--K--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--h--CCChhHHHHHHHHHh
Confidence 77777777543334444444443 234567777777775 67777777765 2 256666555555553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.98 Score=27.39 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 385 VWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+|..|...|...|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.3 Score=41.95 Aligned_cols=96 Identities=9% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGK 398 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~ 398 (586)
.+-|.+.|.+++|+..|.... .+.| +.++|..-..+|.+..++..|+.-.... .+. .-...|..-..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999998775 4566 7888888888999999988877655544 111 112345555555556788
Q ss_pred HHHHHHHHHHHhccCCCCchhH
Q 007878 399 PELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
..+|..-++.+++++|.+...-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 8999999999999999865433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.22 E-value=5.2 Score=35.11 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------eeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERN------LVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677888888888888888888877532 23455666677777787777777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.73 E-value=2.1 Score=27.36 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+|..+...|...|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666666666666665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.70 E-value=14 Score=32.43 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=63.8
Q ss_pred eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-----
Q 007878 279 VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA----- 351 (586)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----- 351 (586)
..+..+..-|++.|+.++|++.|.++.+ ....|. ...+..++..+...+++..+.....++..-..-..|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~--~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD--YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh--hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3566778889999999999999999888 444444 3456677888888899988888877765321111111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 352 -EHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 352 -~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
..|..|. +...+++.+|-+.|-+.
T Consensus 115 lk~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 115 LKVYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHH--HHHhchHHHHHHHHHcc
Confidence 2222222 23467888888888776
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.62 E-value=1 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 007878 135 GFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAK 166 (586)
Q Consensus 135 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 166 (586)
+++++.. |.+...|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 445667777777777777777664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.57 E-value=13 Score=31.91 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=8.0
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 007878 289 AHQGHADMALSSFEEMTS 306 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~ 306 (586)
.+.|++.+|.+.|..+..
T Consensus 178 ~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccchHHHHHHHHHHHc
Confidence 344444444444444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.56 E-value=26 Score=32.10 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 007878 147 SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTA 203 (586)
Q Consensus 147 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (586)
..++.-..+|..+|..+.|-..+++.- -...+-++++|+++|++-
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHH
Confidence 345555566777776666555444321 122344556666666554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.01 E-value=5.3 Score=37.66 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC-------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh
Q 007878 40 GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE-------RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLI 112 (586)
Q Consensus 40 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 112 (586)
|.+.+..+...++..-....+++++...+-++.. |+... .+.++.+. .-++++++.++..=...|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4455666666777776667778888777665543 22221 12233332 335678888887778888888888
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 007878 113 TFCAFLNACSDCSLLQLGRQLHGFLVRSG 141 (586)
Q Consensus 113 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 141 (586)
|++.+++.+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888877777666553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.53 E-value=0.67 Score=39.04 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=63.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhH
Q 007878 15 CLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 94 (586)
.+++.+...+.+......++.+++.+...+....+.++..|++.++.++..++++.... .-...+++.+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45777777888888888899998877667788899999999999888888888884433 333456667777777777
Q ss_pred HHHHHHHH
Q 007878 95 AIDAFINL 102 (586)
Q Consensus 95 A~~~~~~m 102 (586)
|.-+|.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777665
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.42 E-value=1.7 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.99 E-value=7 Score=26.24 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCc
Q 007878 420 HVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGY 495 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 495 (586)
...++-++.+.|++++|.+..+.+.+. +|...+.......+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456777889999999999999998763 45556665556667777777774
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.82 E-value=9.4 Score=29.50 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007878 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
+..+-+..+.. ..+.|++....+.+.||-+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~--~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFG--YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTT--SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhc--cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 55566666666 77889999999999999999999999999999976544 333377776643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.48 E-value=3.3 Score=39.36 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007878 285 IGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363 (586)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 363 (586)
..-|.+.|.+++|++.|.+... +.| |.+++..-..+|.+...+..|..-....+. .-...+.+|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSR 170 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSR 170 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHH
Confidence 4569999999999999998877 567 899999999999999998887776655542 11233455555
Q ss_pred c-------CChHHHHHHHHhC-CCCCCH
Q 007878 364 A-------GLVDRAYEIIKEM-PMRPTI 383 (586)
Q Consensus 364 ~-------g~~~~A~~~~~~m-~~~p~~ 383 (586)
. |...+|.+-++.. .+.|+.
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4 5555555555444 566763
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.96 E-value=27 Score=30.12 Aligned_cols=131 Identities=9% Similarity=0.003 Sum_probs=74.3
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh
Q 007878 134 HGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF 213 (586)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 213 (586)
...+.+.+++|+...+..+++.+.+.|++... ..+...++-||..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L-----------------------------------~qllq~~Vi~DSk 61 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL-----------------------------------HQLLQYHVIPDSK 61 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH-----------------------------------HHHHhhcccCCcH
Confidence 33444556666666666666666666655443 3334455556655
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCC
Q 007878 214 MISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGH 293 (586)
Q Consensus 214 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 293 (586)
.....+-.+.. ....+.++--.|.++= ...+..+++.+...|++-+|.++.......+......++.+-.+.++
T Consensus 62 ~lA~~LLs~~~--~~~~~~Ql~lDMLkRL----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 62 PLACQLLSLGN--QYPPAYQLGLDMLKRL----GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSND 135 (167)
T ss_pred HHHHHHHHhHc--cChHHHHHHHHHHHHh----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCC
Confidence 55544433322 2333444443443320 01345567788889999999999888765555555666777666666
Q ss_pred HHHHHHHHHHhh
Q 007878 294 ADMALSSFEEMT 305 (586)
Q Consensus 294 ~~~A~~~~~~m~ 305 (586)
..-=..+|+-..
T Consensus 136 ~~lf~~V~~ff~ 147 (167)
T PF07035_consen 136 DQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHHHH
Confidence 554444444433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.83 E-value=18 Score=27.91 Aligned_cols=86 Identities=9% Similarity=-0.054 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 007878 127 LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206 (586)
Q Consensus 127 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (586)
-++|.-+-+.+...+- ....+--.-++.+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 3445444444443331 1222222334556778999999999999989999999877653 667777777777777777
Q ss_pred CCCCCHhHHH
Q 007878 207 GVEPKDFMIS 216 (586)
Q Consensus 207 g~~p~~~t~~ 216 (586)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 45544444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.65 E-value=0.79 Score=38.60 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=60.5
Q ss_pred HHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHH
Q 007878 218 VLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 297 (586)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777777888888888777666788888999999998877888887774333 3334566667777777777
Q ss_pred HHHHHHhhh
Q 007878 298 LSSFEEMTS 306 (586)
Q Consensus 298 ~~~~~~m~~ 306 (586)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 777776544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.62 E-value=1.8 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHH
Q 007878 418 GNHVLLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~ 441 (586)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677788888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.32 E-value=12 Score=31.33 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=31.2
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007878 326 SRAGAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRAGLVDRAYEIIKEMPMR 380 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 380 (586)
...++.+++..+++.+. -+.|+.. .-..-.-.+.+.|++++|..+|++....
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34677777777777774 3455422 2222233456777788888877777433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.26 E-value=58 Score=33.35 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007878 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
....-+++..+.++-.+.-...+..+|..-| -+...|..++.+|... ..+.-..+++++++..+. |+....-|...
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3345567777777777777777888888754 4667788888888777 556777888888888776 66666777777
Q ss_pred HHhcCCHHHHHHHHhhCCCC------Ce---eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007878 257 YGKCGSIQDAEIAFNKMPER------NL---VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
|-+ ++.+.+...|.++..+ +. ..|..++.-- ..+.|..+.+..++... .|..--.+.+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHhcc
Confidence 776 7778887777765421 11 1454444311 23455566666655542 3333334555555566777
Q ss_pred cCCHHHHHHHHHHhHH
Q 007878 328 AGAVEKGMKIFYSMTL 343 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~ 343 (586)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777776654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.88 E-value=2.5 Score=24.76 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..+..++..|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.86 E-value=10 Score=28.94 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007878 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 294 ~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
.-++.+-++.+.. ..+.|++....+.+.||-+.+++..|.++|+.++.+. ..+...|..+++
T Consensus 23 ~we~rr~mN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFG--YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 3456666666666 6788999999999999999999999999999886443 334556766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.83 E-value=43 Score=31.58 Aligned_cols=59 Identities=20% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 387 GALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.....|...|.+.+|.++.++++.++|-+...+..|.+.|+..|+--.|.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34445688999999999999999999999999999999999999998888888888754
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=21 Score=35.87 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=35.6
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 007878 362 GRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
...|.++.+...+... .+.....+..+++......|++++|....+.++..+-.++......+..-...|-++++.-.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3444555554444443 11123344444444444555555555555555444333333322222222333445555555
Q ss_pred HHHHH
Q 007878 440 RKEMK 444 (586)
Q Consensus 440 ~~~m~ 444 (586)
+++..
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 55444
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.22 E-value=15 Score=28.29 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=58.7
Q ss_pred CchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 007878 25 IPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRR 104 (586)
Q Consensus 25 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 104 (586)
..++|.-+-+++...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|-.+++..-+.+|-.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456777787777665421 233333334567789999999999999999999999887543 55666666666667766
Q ss_pred CCCCCChhhHH
Q 007878 105 TGGEPDLITFC 115 (586)
Q Consensus 105 ~g~~p~~~t~~ 115 (586)
.| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 55 34444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.75 E-value=10 Score=29.02 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007878 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLV 153 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 153 (586)
++.+-++.+....+.|++....+.|+||.+.+++..|.++++-+.... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455556666667788888888888888888888888888888765332 22334555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.60 E-value=86 Score=34.22 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHH----HHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007878 150 NGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML----VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI 225 (586)
Q Consensus 150 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (586)
..-+++..+...++.|..+-+.-.. |...-..+. .-+-+.|++++|...|-+-... +.|. .++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3445556666666666666544222 222222222 3345678888887776554332 2232 233344444
Q ss_pred cCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007878 226 AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
.....--.+++.+.+.|+. +...-+.|+.+|.|.++.++-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4455555566677777765 55556677888888888777777666654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.47 E-value=21 Score=37.10 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhh
Q 007878 248 FVGSALVDMYGKCGSIQDAEIAFNK 272 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~ 272 (586)
.-|..|.++..+.|++..|.+.|..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHh
Confidence 3444455555555555555554444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.82 E-value=3.4 Score=25.61 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.++..|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888999999988888765
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.64 E-value=10 Score=40.15 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=102.1
Q ss_pred HHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCee----------HHHHHHHHHHhcCCHHHH
Q 007878 232 RSVHAVAVKACVEGNI---FVGSALVDMYGKCGSIQDAEIAFNKMPE-RNLV----------CWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 232 ~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~----------~~~~li~~~~~~g~~~~A 297 (586)
..++.+|.+.--.|++ .+...++-.|-...+++...++.+.+.. ||.. .|.--++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 3445555554333433 3344455566677778877777776654 3221 121112222234677788
Q ss_pred HHHHHHhhhccCCCCCCHHHHHH-------HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC-hHH
Q 007878 298 LSSFEEMTSMRCEAVPNYVTLVC-------VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL-VDR 369 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd~~t~~~-------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~ 369 (586)
+...-.|.++...+.||...... +-+.|...+..+.|.+.|++. +.+.|+...--.+...+..+|. ++.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccc
Confidence 88877777754557888654332 223456667788888888876 4667875543333333333332 111
Q ss_pred HHHHHHhC--------CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007878 370 AYEIIKEM--------PMRPTI------SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 370 A~~~~~~m--------~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
..++ +.+ +.+-.. .-....+.+-.-.+++..|.++.+.|.++.|+.-..
T Consensus 340 s~El-q~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 340 SLEL-QQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred hHHH-HHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 1111 111 111110 011234455566789999999999999999885433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 1e-09
Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 9/186 (4%)
Query: 204 RREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263
R+ P + ++ +L L++ ++ +A + G A +
Sbjct: 84 RQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL 143
Query: 264 QDAEIAFNKMPER-------NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316
A + L +NA++ G+A QG + + P+ +
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT--PDLL 201
Query: 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376
+ L R ++ + G+K A A ++ RA ++ +++
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 377 MPMRPT 382
+ P
Sbjct: 262 FSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 6e-05
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 7/128 (5%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
R+ SP + L + + + ++ + F T
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 61 KDDADKMFDEMPER-------NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLIT 113
A + + L +NA + G K + ++ G PDL++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 114 FCAFLNAC 121
+ A L
Sbjct: 203 YAAALQCM 210
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 92/597 (15%), Positives = 158/597 (26%), Gaps = 217/597 (36%)
Query: 35 LALKSGQIHDVFVGCSAFDMYS------KTGLKDDADKMFDEMPERNLATWNAYISNAVL 88
L K ++ FV Y KT + + + +R+ +N N V
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYN---DNQVF 126
Query: 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQ----LHG--------- 135
+ + ++ LR+ +LL+L + G
Sbjct: 127 AKYNVSRLQPYLKLRQ--------------------ALLELRPAKNVLIDGVLGSGKTWV 166
Query: 136 -------FLVRSGFDGNVSVCNGLVDFY---GKCNEVG-----LAKVVFDGIIDKNDVSW 180
+ V+ D + F+ CN L K+++ ID N S
Sbjct: 167 ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSR 216
Query: 181 C----------------------------SMLVV-YVQNYEE----ENGCQMFLTARREG 207
+LV+ VQN + C++ LT R +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 208 V----------------EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS 251
V V S + L + + N
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVL-TTNPRR-- 329
Query: 252 ALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL---SSFEEMTS-- 306
+ + + SI+D W+ + H + SS +
Sbjct: 330 --LSIIAE--SIRD-------GLAT----WD----NWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 307 MRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK----YGIKPGAEHYACVVDLLG 362
R + L V I ++ L IK VV+ L
Sbjct: 371 YR----KMFDRLS-VF---------PPSAHI-PTILLSLIWFDVIKSDVMV---VVNKLH 412
Query: 363 RAGLVDRAYEIIKEMPMRPTISVWG-ALLNACRVYGKPELGR--IAADNLFK-LDPNDS- 417
+ LV++ P TIS+ L ++ + L R + N+ K D +D
Sbjct: 413 KYSLVEKQ-------PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 418 ------------GNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHI 465
G+H L N+ E L R D ++ K R
Sbjct: 466 PPYLDQYFYSHIGHH--LKNI----EHPERMTLFRMVFLDF--------RFLEQKIR--- 508
Query: 466 FQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKI 522
T+ + I L +L+ YI D N Y+ + + E +
Sbjct: 509 --HDSTAWNASGSILNTLQQLK---FYKPYICD-NDPKYERLVNAILDFLPKIEENL 559
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 586 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.0 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.68 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.51 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.44 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.19 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.09 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.08 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.0 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.0 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.82 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.38 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.38 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.3 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.29 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.29 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.18 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.13 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.86 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.8 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.61 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.29 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.1 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.1 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.58 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.08 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.48 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.3 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.08 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.81 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.52 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.23 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.15 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.14 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.33 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.23 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.89 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.74 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.4 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.94 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.78 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.67 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 84.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 84.19 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.55 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.5 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.1 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=351.13 Aligned_cols=429 Identities=10% Similarity=-0.058 Sum_probs=383.4
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC--CCCcccHHHHHHH
Q 007878 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP--ERNLATWNAYISN 85 (586)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 85 (586)
|+...|+.++..+.+.|++++|..+++.+.+. .|+..++..++..|.+.|++++|..+|+.+. .+++.+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 56778999999999999999999999999864 4788899999999999999999999999984 5789999999999
Q ss_pred HHcCCChhHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 007878 86 AVLGGRPKNAIDAFINLRRT---------------GGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
|.+.|++++|+++|+++... |..++..+++.++.++.+.|++++|.++|+++.+.+ +.+...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence 99999999999999954221 223457899999999999999999999999999885 22333333
Q ss_pred --------------------------------------HHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHc
Q 007878 151 --------------------------------------GLVDFYGKCNEVGLAKVVFDGIID--KNDVSWCSMLVVYVQN 190 (586)
Q Consensus 151 --------------------------------------~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 190 (586)
.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 335667788999999999999987 7999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007878 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAF 270 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 270 (586)
|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..++..+.+..+ .+..+++.++.+|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999865 34778899999999999999999999999997764 37889999999999999999999999
Q ss_pred hhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCC
Q 007878 271 NKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI 347 (586)
Q Consensus 271 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 347 (586)
+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+ .+ +++..++..++.+|.+.|++++|.++|+.+.+. .
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 471 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--F 471 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 98753 5678999999999999999999999999988 32 347899999999999999999999999999864 2
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007878 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+|+++.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 446889999999999999999999999998 44787 789999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 419 NHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+|..++.+|.+.|++++|.+.++++.+.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=326.77 Aligned_cols=414 Identities=10% Similarity=-0.069 Sum_probs=364.5
Q ss_pred CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCC-----------
Q 007878 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPER----------- 74 (586)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------- 74 (586)
..||..++..++.+|...|++++|..+|+.+... ++++.+++.++.+|.+.|++++|.++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4588899999999999999999999999988653 688999999999999999999999999964433
Q ss_pred --------CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHH------------------------------
Q 007878 75 --------NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA------------------------------ 116 (586)
Q Consensus 75 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~------------------------------ 116 (586)
++.+|+.++.+|.+.|++++|+++|++|.+.++. +...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 4789999999999999999999999999885422 2223222
Q ss_pred --------HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 007878 117 --------FLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII---DKNDVSWCSMLV 185 (586)
Q Consensus 117 --------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 185 (586)
++..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 244566778899999999998876 5889999999999999999999999999984 347789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007878 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (586)
+|.+.|++++|.++|+++.... +.+..++..+...+.+.|++++|.+++..+.+..+. +..+++.++.+|.+.|++++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998653 557889999999999999999999999999987654 78899999999999999999
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+ .. +.+..+|+.++..|.+.|++++|.++|+.+.
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999998753 5789999999999999999999999999988 32 3468899999999999999999999999997
Q ss_pred Hhc---CCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 343 LKY---GIKPG--AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 343 ~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 642 55787 789999999999999999999999997 3334 7899999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhh
Q 007878 416 DSGNHVLLSNMFAA 429 (586)
Q Consensus 416 ~~~~~~~l~~~~~~ 429 (586)
++..+..++++|..
T Consensus 583 ~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 583 EIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHhc
Confidence 99999999887753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=257.70 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccC---------cHHHHHHHHHHHHhCCCCchh
Q 007878 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG---------LELGRSVHAVAVKACVEGNIF 248 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 248 (586)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35677788888888888888888888888999999999999988876553 577888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007878 249 VGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
+||+||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+ .|+.||..||++||.+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE--SEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHH
Confidence 999999999999999999999988863 8889999999999999999999999999988 8889999999999999
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007878 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 364 (586)
|++.|++++|.++|++|.+. +..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999665 8899999999988888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=254.34 Aligned_cols=184 Identities=10% Similarity=0.065 Sum_probs=165.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCChh
Q 007878 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL---------LQLGRQLHGFLVRSGFDGNVS 147 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 147 (586)
..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678899999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007878 148 VCNGLVDFYGKCNEVGLAKVVFDGI----IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
+||+||++|++.|++++|.++|++| ..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999888 357888999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007878 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC 260 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (586)
+.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=232.66 Aligned_cols=338 Identities=11% Similarity=0.030 Sum_probs=207.7
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007878 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
.+.+.|++++|...++...... +.+..+|..+..++.+.|++++|...++.+++.. +.+...+..+..+|.+.|++++
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444433321 1233344444444444444444444444444432 2223344444444444444444
Q ss_pred HHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 007878 165 AKVVFDGIID--K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241 (586)
Q Consensus 165 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (586)
|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++++.
T Consensus 120 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444444321 1 22334444455555555555555555555432 223445555555555566666666666665555
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHH
Q 007878 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVT 317 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t 317 (586)
++. +...+..+...+...|++++|...|++..+ .+..+|..+...|.+.|++++|++.|+++.+ . .| +..+
T Consensus 199 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~ 273 (388)
T 1w3b_A 199 DPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--L--QPHFPDA 273 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T--CSSCHHH
T ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h--CCCCHHH
Confidence 433 455566666667777777777777665542 3456777777788888888888888888877 2 24 3567
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 007878 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRV 395 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 395 (586)
+..+..++.+.|++++|...|+.+.+. .+++...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+..
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 778888888888888888888888653 2445778888888888888888888888887 4444 46778888888888
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007878 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
.|++++|...++++.++.|+++..+..++..+...|+
T Consensus 352 ~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888888888888888888888887766653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-25 Score=226.29 Aligned_cols=350 Identities=15% Similarity=0.125 Sum_probs=306.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007878 83 ISNAVLGGRPKNAIDAFINLRRTGGEPD-LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
...+.+.|++++|++.++++.+. .|+ ...+..+...+...|++++|...++.+++.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45677889999999999998775 354 4456666777888999999999999998875 6678899999999999999
Q ss_pred hHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcHHHHHHHHH
Q 007878 162 VGLAKVVFDGIID--K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 162 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
+++|...|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998743 3 4568999999999999999999999999875 4554 4566677788889999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-
Q 007878 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP- 313 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p- 313 (586)
+.+..+. +..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++... +.|
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~ 235 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS----LSPN 235 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH----HCTT
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCcC
Confidence 9988654 678899999999999999999999999864 4567888999999999999999999999988 235
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALL 390 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 390 (586)
+..++..+..++...|++++|...|+.+.+. .| +...|..+...|.+.|++++|.+.++++ ..+++..+|..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 4788999999999999999999999999753 44 4778999999999999999999999998 2335788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..+...|++++|...++++.+..|++..++..++.+|.+.|++++|.+.++++.+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999986
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-23 Score=213.79 Aligned_cols=393 Identities=11% Similarity=-0.035 Sum_probs=317.9
Q ss_pred hhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 007878 45 VFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
...+..+...+.+.|++++|+..|+++.. |+..+|..+..++.+.|++++|+..|+++.+.++ .+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34566778889999999999999998864 8888999999999999999999999999988642 25678889999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH---------------------------------
Q 007878 123 DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVF--------------------------------- 169 (586)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~--------------------------------- 169 (586)
..|++++|...++.+.+.+ +++......++..+.+......+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998886 344444445555444433222222222
Q ss_pred -----hcCC---------CC-ChhhHHHHHHHHHH---cCChHHHHHHHHHHHH-----CCCCC--------CHhHHHHH
Q 007878 170 -----DGII---------DK-NDVSWCSMLVVYVQ---NYEEENGCQMFLTARR-----EGVEP--------KDFMISSV 218 (586)
Q Consensus 170 -----~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 218 (586)
.... .+ +...|......+.. .|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1110 01 13344444444554 8999999999999987 32122 34567778
Q ss_pred HHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH
Q 007878 219 LSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 295 (586)
...+...|++++|...+..+.+..+. ..++..+...|...|++++|...|+++.+ .+..+|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999998766 88899999999999999999999998754 46778999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 007878 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 375 (586)
+|+..|++..+ .. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++
T Consensus 322 ~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKE--LD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHH--TC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988 32 225678889999999999999999999999764 23357788999999999999999999999
Q ss_pred hC----CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 376 EM----PMRPT----ISVWGALLNACRV---YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 376 ~m----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
++ +..|+ ..+|..+...+.. .|++++|...++++.+..|+++.++..++.+|...|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87 22233 4489999999999 9999999999999999999999999999999999999999999999998
Q ss_pred hC
Q 007878 445 DV 446 (586)
Q Consensus 445 ~~ 446 (586)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-22 Score=206.46 Aligned_cols=319 Identities=10% Similarity=0.048 Sum_probs=220.2
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007878 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556666777777777777777777776542 2255666677777777777777777777777664 345566667777
Q ss_pred HHHhcCChHHHHHHHhcCCCCC---h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCc
Q 007878 155 FYGKCNEVGLAKVVFDGIIDKN---D---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGL 228 (586)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 228 (586)
+|.+.|++++|...|+++...+ . ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 7777777777777776664322 2 44444433311111 11122233445555
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007878 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
++|...+..+.+..+. +..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555554432 455666666666777777777766666543 456677777777888888888888888877
Q ss_pred hccCCCCCCH-HHHHHH------------HHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCh
Q 007878 306 SMRCEAVPNY-VTLVCV------------LSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACVVDLLGRAGLV 367 (586)
Q Consensus 306 ~~~~g~~pd~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~ 367 (586)
. ..|+. ..+..+ ..+|.+.|++++|...|+.+.+. .|+ ..+|..+..++.+.|++
T Consensus 239 ~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 239 K----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp H----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred H----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 6 23443 333333 78889999999999999999764 454 45788999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 368 DRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 368 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
++|++.++++ ...| +..+|..+..+|...|++++|...+++++++.|+++..+..++.+
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999987 4344 688999999999999999999999999999999999999888843
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-23 Score=213.63 Aligned_cols=403 Identities=11% Similarity=-0.098 Sum_probs=318.9
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHc
Q 007878 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVL 88 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 88 (586)
.+...-..+...|++++|...|..+++.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45566677889999999999999999986 7899999999999999999999999998753 356789999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH------------------------------
Q 007878 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLV------------------------------ 138 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~------------------------------ 138 (586)
.|++++|+..|+++...+. ++......++..+........+.+.+..+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988753 344444444443332222222221111100
Q ss_pred -----HhCC---------CCChhHHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-ChhhHHHHH
Q 007878 139 -----RSGF---------DGNVSVCNGLVDFYGK---CNEVGLAKVVFDGIID----------------K-NDVSWCSML 184 (586)
Q Consensus 139 -----~~g~---------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 184 (586)
.... +.+...+..+...+.. .|++++|...|+++.. + +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 0000 1113444444444554 8999999999987644 1 345788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007878 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQ 264 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 264 (586)
..+...|++++|+..|+++.... |+...+..+..++...|++++|...+..+.+..+. +..++..+...|.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998864 44778888899999999999999999999887654 6778899999999999999
Q ss_pred HHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007878 265 DAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 265 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
+|...|++..+ .+..+|..+...|...|++++|+..|+++.+ .. +.+..++..+...+...|++++|...|+.+
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998653 4677899999999999999999999999988 22 235678889999999999999999999998
Q ss_pred HHhcCCCCC----hHHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007878 342 TLKYGIKPG----AEHYACVVDLLGR---AGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 342 ~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
.....-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 764322333 4488999999999 99999999999987 3333 6778899999999999999999999999999
Q ss_pred CCCCchhHHHH
Q 007878 413 DPNDSGNHVLL 423 (586)
Q Consensus 413 ~p~~~~~~~~l 423 (586)
.|.++..+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 99987776655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=201.47 Aligned_cols=358 Identities=10% Similarity=-0.024 Sum_probs=222.0
Q ss_pred HHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 007878 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRT 105 (586)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 105 (586)
+...+..++... +.+...+..+...|.+.|++++|+.+|+++.. .+..+|..+...+.+.|++++|+..|+++.+.
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334444444433 45677888999999999999999999998753 46778999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH
Q 007878 106 GGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNV---SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCS 182 (586)
Q Consensus 106 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 182 (586)
+. .+..++..+..++...|++++|.+.++.+.+.. +.+. ..+..+...+...+ +..
T Consensus 90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-------------------~~~ 148 (450)
T 2y4t_A 90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR-------------------LRS 148 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-------------------HHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-------------------HHH
Confidence 43 256788889999999999999999999998764 3334 56666655422111 122
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007878 183 MLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
+...+.+.|++++|+..|+++.... +.+...+..+..++...|++++|...+..+.+..+. +..++..+...|.+.|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 2333444555555555555554432 223444555555555555555555555555544322 44555555555555555
Q ss_pred HHHHHHHHhhCCC--C-CeeHHHHH------------HHHHHhcCCHHHHHHHHHHhhhccCCCCCC-----HHHHHHHH
Q 007878 263 IQDAEIAFNKMPE--R-NLVCWNAI------------IGGYAHQGHADMALSSFEEMTSMRCEAVPN-----YVTLVCVL 322 (586)
Q Consensus 263 ~~~A~~~~~~m~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-----~~t~~~ll 322 (586)
+++|...|+++.+ | +...+..+ ...+...|++++|+..|+++.+ +.|+ ...+..+.
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHH
Confidence 5555555555432 2 22223222 6667777777777777777776 2244 33566677
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH--------
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNA-------- 392 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-------- 392 (586)
.++.+.|++++|+..++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 7777777777777777777543 1234677777777777777777777777776 44454 3444444422
Q ss_pred ----HHHcC-----CHHHHHHHHHH-HhccCCCC
Q 007878 393 ----CRVYG-----KPELGRIAADN-LFKLDPND 416 (586)
Q Consensus 393 ----~~~~~-----~~~~a~~~~~~-~~~~~p~~ 416 (586)
|...| +.+++.+.+++ .++..|++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 22223 55677777775 56666653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=206.89 Aligned_cols=422 Identities=11% Similarity=-0.033 Sum_probs=317.7
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHH
Q 007878 11 FTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAV 87 (586)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 87 (586)
..|..+...+.+.|+++.|...+..+++.. +.++..+..+...|.+.|++++|++.|+++.+ .+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 445666777888999999999999999876 56788899999999999999999999988753 45678888889999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHH
Q 007878 88 LGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG--FDGNVSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A 165 (586)
..|++++|+..|+.+.. .|+... ..+..+...+....+...++.++... ..+........+..|....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999964422 232211 11223333344567777777775431 111122234455567778888888
Q ss_pred HHHHhcCCCCChh---hHHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCC--------HhHHHHHHHHHhccc
Q 007878 166 KVVFDGIIDKNDV---SWCSMLVVYVQ--------NYEEENGCQMFLTARREGVEPK--------DFMISSVLSACARIA 226 (586)
Q Consensus 166 ~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~ 226 (586)
...+......+.. .+..+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 8887777655443 33333333322 25789999999998864 344 224556667778889
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007878 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
++++|...+..+.+..+. ...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|...|++
T Consensus 258 ~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999987654 77888899999999999999999998763 4577899999999999999999999999
Q ss_pred hhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 007878 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PM 379 (586)
Q Consensus 304 m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 379 (586)
..+ .. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+...|...|++++|.+.++++ +.
T Consensus 336 a~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 336 AQS--LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHH--HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH--hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 988 22 224678888999999999999999999999764 2344678889999999999999999999986 11
Q ss_pred C----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 380 R----PTISVWGALLNACRVY----------GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 380 ~----p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
. .....+..+...+... |++++|...++++.+..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1223345555667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 007878 446 VG 447 (586)
Q Consensus 446 ~g 447 (586)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=190.04 Aligned_cols=399 Identities=11% Similarity=-0.024 Sum_probs=296.9
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHc
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVL 88 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 88 (586)
+..+|..+..++...|++++|.+.++.+++.. +.+..++..+...|.+.|++++|...|+.+. .+....+..+..+..
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~ 135 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLE 135 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHH
Confidence 56678888889999999999999999999986 5678889999999999999999999997443 222233334555666
Q ss_pred CCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc--
Q 007878 89 GGRPKNAIDAFINLRRT------GGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN-VSVCNGLVDFYGKC-- 159 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~-- 159 (586)
.+...+|+..++++... ...|+...+.. +....+.+.+...+..... ..+. ......+...+...
T Consensus 136 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp HHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhh
Confidence 66678899999998653 12344444333 3334444444333222111 1111 11333344333322
Q ss_pred ------CChHHHHHHHhcCCCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007878 160 ------NEVGLAKVVFDGIIDKN----------DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 160 ------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
|++++|..+|+++.+.+ ..+|..+...+...|++++|+..|++.... .|+...+..+...+.
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 47889999998885532 224667778889999999999999999885 466788888899999
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHH
Q 007878 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSS 300 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 300 (586)
..|++++|...+..+.+..+. +..++..+...|...|++++|.+.|++..+ .+..+|..+...|...|++++|.+.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999988765 678899999999999999999999998763 4567899999999999999999999
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhc----------CC
Q 007878 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP----GAEHYACVVDLLGRA----------GL 366 (586)
Q Consensus 301 ~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~ 366 (586)
|+++.+ .. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |+
T Consensus 367 ~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 367 FNETKL--KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHH--HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHH--hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 999988 32 23467888999999999999999999999875421111 123345556777787 99
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH
Q 007878 367 VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 367 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 421 (586)
+++|...|+++ ...| +..+|..+...+...|++++|...++++.++.|.+.....
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999987 3333 6788999999999999999999999999999998766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-18 Score=169.63 Aligned_cols=320 Identities=11% Similarity=0.027 Sum_probs=205.5
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007878 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDF 155 (586)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 155 (586)
+..|..+...+...|++++|+..|+++..... .+..++..+...+...|++++|...++.+++.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34455666667777777777777777665432 245566666666666677777777776666653 3344556666666
Q ss_pred HHhcCChHHHHHHHhcCCCCCh------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007878 156 YGKCNEVGLAKVVFDGIIDKND------VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
|.+.|++++|...|++..+.++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666655533222 12222210000 001112234556667777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+|...+..+.+..+. +..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777666543 566677777777778888888777777543 4556777777778888888888888888776
Q ss_pred ccCCCCCC-HHHHH------------HHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCChH
Q 007878 307 MRCEAVPN-YVTLV------------CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA-----EHYACVVDLLGRAGLVD 368 (586)
Q Consensus 307 ~~~g~~pd-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~ 368 (586)
. .|+ ...+. .+...+.+.|++++|...++.+.+. .|+. ..+..+...+.+.|+++
T Consensus 217 --~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 217 --L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp --H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 2 233 22222 2255677888888888888887654 3332 23455677888888888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 369 RAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 369 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
+|.+.+++. ...| +..+|..+...+...|++++|...++++.+++|++...+..+..++.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 888888876 3334 67778888888888888888888888888888888777777666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-18 Score=167.74 Aligned_cols=304 Identities=10% Similarity=0.016 Sum_probs=232.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 007878 111 LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVY 187 (586)
Q Consensus 111 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 187 (586)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456666777777888888888888877764 44566777777777888888888877776632 2456677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC---CHh-HHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007878 188 VQNYEEENGCQMFLTARREGVEP---KDF-MISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
...|++++|+..|++..+. .| +.. .+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777653 34 211 11111110 00 11233456788999999
Q ss_pred HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007878 264 QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 264 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+ .. +.+..++..+...+...|++++|...|+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 5677889999999999999999999999988 32 34678899999999999999999999999
Q ss_pred hHHhcCCCCC-hHHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHH
Q 007878 341 MTLKYGIKPG-AEHYA------------CVVDLLGRAGLVDRAYEIIKEM-PMRPT-I----SVWGALLNACRVYGKPEL 401 (586)
Q Consensus 341 ~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~ 401 (586)
..+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++
T Consensus 214 a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 9764 344 33322 3366789999999999999987 33344 2 235567788999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
|...++++.+..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999864
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=176.23 Aligned_cols=347 Identities=13% Similarity=0.074 Sum_probs=163.0
Q ss_pred HhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 007878 56 SKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHG 135 (586)
Q Consensus 56 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 135 (586)
-+.|++++|.++++++..|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999997665 8999999999999999999999752 577899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH
Q 007878 136 FLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMI 215 (586)
Q Consensus 136 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 215 (586)
..++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77775 45678899999999999999999988864 67789999999999999999999999876 369
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHH
Q 007878 216 SSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 295 (586)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999888 278999999999999999999988877765 33444556889999999999
Q ss_pred HHHHHHHHhhhccCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHhcCCh
Q 007878 296 MALSSFEEMTSMRCEAVPNYV--TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP------GAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~ 367 (586)
+|+.+++..... . +-... |...++-+-.+.+++.+.++.|..- -+++| +...|.-++-.|..-+++
T Consensus 225 Eai~lLe~aL~l--e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 225 ELITMLEAALGL--E-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHTTS--T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCC--c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999998762 2 22233 4444454555566777777777533 25555 467889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+.|...+-+-+ |+..--..+.....+-.+.|.--+...-.++..| ...+.|..++...=+...+.+++++
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 99987665542 2222222333333444454443333333333333 3344455555444455555544443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-18 Score=164.31 Aligned_cols=287 Identities=11% Similarity=-0.034 Sum_probs=202.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007878 143 DGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL 219 (586)
Q Consensus 143 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 219 (586)
+.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455555666666666666666666665532 234455556666666777777777777666542 22445566666
Q ss_pred HHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH
Q 007878 220 SACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 220 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 295 (586)
..+...| ++++|...+..+.+..+. +...+..+...|...|++++|.+.|++..+ .+..+|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666667 677777777777665543 456677777778888888888887777653 34566777788888888888
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHhcCChH
Q 007878 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG-------IKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~ 368 (586)
+|.+.|++..+ .. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|+++
T Consensus 177 ~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS--IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT--TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH--hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 88888888877 22 23467777888888888888888888888765321 1334678888888999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCChH
Q 007878 369 RAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF-AATGRWE 434 (586)
Q Consensus 369 ~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 434 (586)
+|.+.+++. ... .+..+|..+...+...|++++|...++++.+++|+++..+..++..+ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999988887 222 35678888888999999999999999999999999998888888887 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-16 Score=165.86 Aligned_cols=393 Identities=9% Similarity=0.027 Sum_probs=248.6
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 007878 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN 119 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 119 (586)
.+...|..++. +.+.|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...|...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 34455555555 2455566666666655543 2 3334555555555566666666666665543 244444443332
Q ss_pred HH-hcCCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHhcCCC-CCh---hh
Q 007878 120 AC-SDCSLLQLGRQ----LHGFLVRS-GFDG-NVSVCNGLVDFYGK---------CNEVGLAKVVFDGIID-KND---VS 179 (586)
Q Consensus 120 ~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~ 179 (586)
.. ...|+.+.|.+ +|+.+++. |..| +...|...+....+ .|+++.|..+|++... |+. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 11 22344443333 44444432 3322 23455555554433 4566666666665433 111 12
Q ss_pred HHHHHHHH-------------HHcCChHHHHHHHHHHH------HCC---CCCCH--------hHHHHHHHHHhc----c
Q 007878 180 WCSMLVVY-------------VQNYEEENGCQMFLTAR------REG---VEPKD--------FMISSVLSACAR----I 225 (586)
Q Consensus 180 ~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~~~~~----~ 225 (586)
|....... .+.+++.+|..+++++. +.. ++|+. ..|...+..... .
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22211100 12345667777766532 111 24431 233333322221 1
Q ss_pred cCc----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhCCC---C-CeeHHHH
Q 007878 226 AGL----ELGRSVHAVAVKACVEGNIFVGSALVDMYGK-------CGSIQ-------DAEIAFNKMPE---R-NLVCWNA 283 (586)
Q Consensus 226 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~---~-~~~~~~~ 283 (586)
++. +.+..++++++...+. +..+|..++..+.+ .|+++ +|..+|++..+ | +...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 3667788888887544 67788888888875 69877 89999998763 3 4678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 007878 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDL 360 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 360 (586)
++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|+.+|+...+. .|+ ...|......
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 99999999999999999999998 34653 47888888888999999999999999753 343 3334333322
Q ss_pred -HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch----hHHHHHHHHhhcCCh
Q 007878 361 -LGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG----NHVLLSNMFAATGRW 433 (586)
Q Consensus 361 -~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~ 433 (586)
+...|+.++|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++. .+...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999987 3334 5788999999999999999999999999998776554 677777878889999
Q ss_pred HHHHHHHHHHHhC
Q 007878 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
+.+..+.+++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-16 Score=161.20 Aligned_cols=375 Identities=10% Similarity=-0.046 Sum_probs=300.6
Q ss_pred HHHHHHHHHhCCCCChhhhHHHHHHHHh----cCCchHHHHHhccCCC-CCcccHHHHHHHHHc----CCChhHHHHHHH
Q 007878 30 KQLHALALKSGQIHDVFVGCSAFDMYSK----TGLKDDADKMFDEMPE-RNLATWNAYISNAVL----GGRPKNAIDAFI 100 (586)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 100 (586)
...+....+ ..++..+..|...|.. .+++++|...|++..+ .+..++..|-..|.. .+++++|+..|+
T Consensus 27 ~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 344444444 3467777888888887 8999999999987654 467778888888888 899999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcC
Q 007878 101 NLRRTGGEPDLITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK----CNEVGLAKVVFDGI 172 (586)
Q Consensus 101 ~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~ 172 (586)
+..+.| +...+..+...+.. .++.++|...++...+.| +...+..|..+|.. .++.++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998865 55667777777776 789999999999998876 56778888888887 78999999999876
Q ss_pred CC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----ccCcHHHHHHHHHHHHhCC
Q 007878 173 ID-KNDVSWCSMLVVYVQ----NYEEENGCQMFLTARREGVEPKDFMISSVLSACAR----IAGLELGRSVHAVAVKACV 243 (586)
Q Consensus 173 ~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 243 (586)
.+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|...+....+.+
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 44 467788888888888 899999999999998865 55666667777665 788999999999988765
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCC
Q 007878 244 EGNIFVGSALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVP 313 (586)
Q Consensus 244 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~p 313 (586)
+...+..+..+|.. .++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+ .+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~--~~--- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE--QG--- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH--TT---
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh--cC---
Confidence 45677778888887 8999999999998765 5667778888888877 899999999999988 44
Q ss_pred CHHHHHHHHHHhhccC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHH
Q 007878 314 NYVTLVCVLSACSRAG---AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR----AGLVDRAYEIIKEMPMRPTISVW 386 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~ 386 (586)
+...+..+...|...| +.++|+..|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 4566677777777656 789999999998753 467788888899988 89999999999987333467788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhccCCC---CchhHHHHHHHHh
Q 007878 387 GALLNACRV----YGKPELGRIAADNLFKLDPN---DSGNHVLLSNMFA 428 (586)
Q Consensus 387 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 428 (586)
..|...|.. .++.++|...++++.+.+|+ ++.....++.++.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 888888888 89999999999999999854 5666666655444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-17 Score=158.69 Aligned_cols=264 Identities=11% Similarity=-0.026 Sum_probs=228.9
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007878 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV 254 (586)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 254 (586)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+.+..+. +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466778888999999999999999999998764 334556667788889999999999999999998755 677888999
Q ss_pred HHHHhcC-CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC
Q 007878 255 DMYGKCG-SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA 330 (586)
Q Consensus 255 ~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~ 330 (586)
..|...| ++++|.+.|++..+ .+...|..+...+...|++++|++.|+++.+ .. +.+...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hc-cccHHHHHHHHHHHHHHhh
Confidence 9999999 99999999998754 4567899999999999999999999999988 22 2245677779999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCH
Q 007878 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM----------RPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~~~~ 399 (586)
+++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ .. ..+..+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999753 2345788999999999999999999999886 11 23467899999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++|...++++.+..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=165.52 Aligned_cols=277 Identities=10% Similarity=-0.025 Sum_probs=213.2
Q ss_pred hcCChHHHHH-HHhcCCC---C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007878 158 KCNEVGLAKV-VFDGIID---K----NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 158 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665422 1 34567778888888888888888888887753 345667777778888888888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHH---------------HHHHHHhc
Q 007878 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNA---------------IIGGYAHQ 291 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~~~~ 291 (586)
+|...+..+.+..+. +..++..+...|...|++++|.+.|+++.+ | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 888888888877654 677788888888888888888888887643 2 2222211 23334488
Q ss_pred CCHHHHHHHHHHhhhccCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007878 292 GHADMALSSFEEMTSMRCEAVP---NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 292 g~~~~A~~~~~~m~~~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
|++++|+..|+++.+. .| +..++..+...+...|++++|+..|+.+... .+.+...+..+...|.+.|+++
T Consensus 195 ~~~~~A~~~~~~a~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHh----CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999882 24 4788999999999999999999999999764 2334788999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHhhcCChHH
Q 007878 369 RAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND-----------SGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 369 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 435 (586)
+|.+.++++ ...| +..+|..+...+...|++++|...++++.++.|++ ..++..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 3333 57889999999999999999999999999998877 7889999999999999999
Q ss_pred HHHHHHH
Q 007878 436 ADLVRKE 442 (586)
Q Consensus 436 a~~~~~~ 442 (586)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-15 Score=153.69 Aligned_cols=352 Identities=11% Similarity=-0.022 Sum_probs=296.1
Q ss_pred CCcccHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCC
Q 007878 74 RNLATWNAYISNAVL----GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGN 145 (586)
Q Consensus 74 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 145 (586)
.++.++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466777777777877 899999999999998864 56677778888877 899999999999998876 5
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHhcCCCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHH
Q 007878 146 VSVCNGLVDFYGK----CNEVGLAKVVFDGIIDK-NDVSWCSMLVVYVQ----NYEEENGCQMFLTARREGVEPKDFMIS 216 (586)
Q Consensus 146 ~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 216 (586)
...+..|..+|.. .+++++|...|++..+. ++.++..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778889999998 88999999999887543 66788888888887 889999999999998865 667777
Q ss_pred HHHHHHhc----ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHHHH
Q 007878 217 SVLSACAR----IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAIIGG 287 (586)
Q Consensus 217 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~ 287 (586)
.+...+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999999876 56778888888886 8899999999998764 566777888888
Q ss_pred HHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007878 288 YAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRA-----GAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358 (586)
Q Consensus 288 ~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 358 (586)
|.. .++.++|+..|++..+ .+ +...+..+...|... +++++|...|+...+. .+...+..|.
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg 335 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAE--QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLG 335 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHT--TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence 887 8999999999999987 44 556667777777776 8999999999998753 2456778888
Q ss_pred HHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh--
Q 007878 359 DLLGRAG---LVDRAYEIIKEMPMRPTISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA-- 429 (586)
Q Consensus 359 ~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 429 (586)
..|...| ++++|++.|++.-...+...+..|...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 889999999988333578899999999988 899999999999999875 46788999999998
Q ss_pred --cCChHHHHHHHHHHHhCCC
Q 007878 430 --TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 430 --~g~~~~a~~~~~~m~~~g~ 448 (586)
.++.++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-17 Score=162.03 Aligned_cols=228 Identities=11% Similarity=0.093 Sum_probs=111.3
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007878 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFY 156 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 156 (586)
..|..+...+.+.|++++|+..|+++.+... .+..++..+..++...|++++|...++.+++.. +.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~------------ 130 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD------------ 130 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CC------------
Confidence 3455555555555555555555555554321 133344444445555555555555555554443 22
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHH---------------HHH
Q 007878 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF-MISS---------------VLS 220 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~ 220 (586)
+..+|..+...|...|++++|++.|+++.... |+.. .+.. .+.
T Consensus 131 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 131 -------------------NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTH
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 34445555555555555555555555555432 2211 1110 122
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHH
Q 007878 221 ACARIAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 296 (586)
.+...|++++|...+..+.+..+.. +..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 2225555666666665555544332 344555555555555555555555555432 233455555555555555555
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|+..|+++.+ .. +.+..++..+..+|.+.|++++|...|+.+.
T Consensus 270 A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 270 AVAAYRRALE--LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555554 11 1124455555555555555555555555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=169.32 Aligned_cols=251 Identities=11% Similarity=0.013 Sum_probs=110.6
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007878 158 KCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678888888888888554 4888999999999999999988854 25777888888888889999999987777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHH
Q 007878 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVT 317 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t 317 (586)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------hh
Confidence 7664 34577788899999999999998887753 77779999999999999999999999866 25
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007878 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYG 397 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 397 (586)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G 221 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCC
Confidence 788888999999999999988876 26788899999999999999997766655444443 446888889999
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc--CChHHHHHHHH
Q 007878 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT--GRWEEADLVRK 441 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 441 (586)
++++|..+++..+.+++...+.|..|+-+|++- |+..+..+.|.
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999888888888888888754 44555555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=162.39 Aligned_cols=262 Identities=9% Similarity=-0.072 Sum_probs=209.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007878 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVD 255 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 255 (586)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+.++++..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45568888888999999999999999888754 346778888888889999999999999998887654 6778888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-----------CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 256 MYGKCGSIQDAEIAFNKMPE--R-----------NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~--~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
.|.+.|++++|.+.|+++.+ | ....+..+...+...|++++|++.|+++.+... -.++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHHHH
Confidence 99999999999999988753 1 123344567889999999999999999988311 112578899999
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
..+...|++++|+..|+.+.+. .+.+...|..+...|.+.|++++|++.|+++ ...| +..+|..+...+...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999764 2345789999999999999999999999987 3344 5788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 401 LGRIAADNLFKLDPN------------DSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+|...+++++++.|. +...+..++.++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998766 367888999999999999988887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-15 Score=158.72 Aligned_cols=398 Identities=10% Similarity=0.009 Sum_probs=288.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHH-
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISN- 85 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~- 85 (586)
|...|..++.. ...|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567778874 67899999999999999763 66778899999999999999999999998765 777778777753
Q ss_pred HHcCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------CCChHHHHHHHHHHHHhCCCCChhHHH
Q 007878 86 AVLGGRPKNAID----AFINLRR-TGGEPD-LITFCAFLNACSD---------CSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 86 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
....|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+|+.+++....+....|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 345678877765 7776654 355554 4455555554433 578999999999998732111123443
Q ss_pred HHHHHH-------------HhcCChHHHHHHHhc-------CC------CCC--------hhhHHHHHHHHHHc----CC
Q 007878 151 GLVDFY-------------GKCNEVGLAKVVFDG-------II------DKN--------DVSWCSMLVVYVQN----YE 192 (586)
Q Consensus 151 ~ll~~~-------------~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~----g~ 192 (586)
...... .+.+++..|..++.. +. .|+ ...|...+.....+ ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 332211 123556777766654 11 122 24566655433332 23
Q ss_pred h----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-------ccCcH-------HHHHHHHHHHHhCCCCchhHHHHHH
Q 007878 193 E----ENGCQMFLTARREGVEPKDFMISSVLSACAR-------IAGLE-------LGRSVHAVAVKACVEGNIFVGSALV 254 (586)
Q Consensus 193 ~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li 254 (586)
. ++|+.+|++..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+...+..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47788999888752 3356677777766664 68887 8999999998732233688999999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CCe--eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHH-hhcc
Q 007878 255 DMYGKCGSIQDAEIAFNKMPE--RNL--VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSA-CSRA 328 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a-~~~~ 328 (586)
..+.+.|++++|..+|+++.+ |+. ..|...+..+.+.|+.++|.++|++..+ . .|+ ...|...... +...
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--D--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--C--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c--cCCchHHHHHHHHHHHHHc
Confidence 999999999999999998764 432 4799999999999999999999999987 2 233 3333322222 3368
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHH
Q 007878 329 GAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT--ISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 329 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a 402 (586)
|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998653 235788999999999999999999999997 33332 55898889888999999999
Q ss_pred HHHHHHHhccCCC
Q 007878 403 RIAADNLFKLDPN 415 (586)
Q Consensus 403 ~~~~~~~~~~~p~ 415 (586)
..+..++.+..|.
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999998874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-16 Score=148.91 Aligned_cols=267 Identities=10% Similarity=-0.020 Sum_probs=197.4
Q ss_pred HHhcCChHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHH
Q 007878 156 YGKCNEVGLAKVVFDGIIDKNDV----SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG 231 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 231 (586)
....|++..|...++.....++. ....+..+|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 34567777777776665443322 334456677777777777765543 1245556666677777777777777
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 007878 232 RSVHAVAVKACVEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE 310 (586)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g 310 (586)
.+.++.++..+..| +...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+ .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~- 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--Q- 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h-
Confidence 77777777765433 556677778889999999999999998 56778899999999999999999999999988 3
Q ss_pred CCCCHHHH---HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 007878 311 AVPNYVTL---VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISV 385 (586)
Q Consensus 311 ~~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 385 (586)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3664321 12334444569999999999999875 3557889999999999999999999999997 4444 6778
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007878 386 WGALLNACRVYGKPEL-GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
|..++..+...|+.++ +..+++++.+++|+++.+. +...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 5789999999999987654 33444455554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-14 Score=156.88 Aligned_cols=378 Identities=10% Similarity=0.026 Sum_probs=289.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhC--CCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007878 13 FPCLFKASSALHIPVTGKQLHALALKSG--QIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
-+...+++...|.+.++.++++.++-.+ +..+....+.|+....+. +..+...+.+....-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3667888889999999999999988432 113445667777777666 4455555555544322 444667788899
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007878 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
.+++|+.+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|...|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999852 12222334433 567889998888754 357789999999999999999999997
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHH
Q 007878 171 GIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG 250 (586)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (586)
+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 64 678889999999999999999999998777654 44434445888999998888644442 2 3455667
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC
Q 007878 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA 330 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~ 330 (586)
..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|...|+
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~--------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC--------CHHHHHHHHHHHhhhhH
Confidence 77999999999999999999985 589999999999999999999998762 45889999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--CCHHHHHHHH
Q 007878 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY--GKPELGRIAA 406 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--~~~~~a~~~~ 406 (586)
+..|......+ ..+...+..++..|.+.|.+++|+.+++.. +..| ....|+-|...+.+. ++..++.+.|
T Consensus 1266 f~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998876543 346677889999999999999999999876 5544 344566666666554 4556666777
Q ss_pred HHHhccCC-----CCchhHHHHHHHHhhcCChHHHHH
Q 007878 407 DNLFKLDP-----NDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 407 ~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
..-..+.| .+...|.-+.-.|.+.|+|+.|..
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66655555 567788899999999999999984
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=159.62 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHc
Q 007878 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQN 190 (586)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 190 (586)
+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|++..+ .+..+|..+...|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 3333444444444444444444444432 22344444445555555555555555544321 2344555556666666
Q ss_pred CChHHHHHHHHHHHHCCCCCC-----------HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHH
Q 007878 191 YEEENGCQMFLTARREGVEPK-----------DFMISSVLSACARIAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYG 258 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 258 (586)
|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+..+.+..+.. +..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 66666666666655421 21 1122233455556666666666666666654331 4555555666666
Q ss_pred hcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHH
Q 007878 259 KCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 334 (586)
+.|++++|.+.|++..+ .+..+|+.+...|...|++++|+..|+++.+ . .|+ ..++..+..+|...|++++|
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--I--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 66666666666655432 3345555666666666666666666666555 1 232 45555555556666666666
Q ss_pred HHHHHHhH
Q 007878 335 MKIFYSMT 342 (586)
Q Consensus 335 ~~~~~~~~ 342 (586)
...|+.+.
T Consensus 301 ~~~~~~al 308 (365)
T 4eqf_A 301 VSNFLTAL 308 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-15 Score=154.46 Aligned_cols=362 Identities=13% Similarity=0.023 Sum_probs=182.5
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC------CC
Q 007878 78 TWNAYISNAVLGGRPKNAIDAFINLRRT-----G--GEP-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSG------FD 143 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~ 143 (586)
.||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...++++.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3444444444455555555554443220 0 111 12344455555555555555555555443321 00
Q ss_pred -CChhHHHHHHHHHHhc--CChHHHHHHHhcCCC--C-ChhhHHHHHHH---HHHcCChHHHHHHHHHHHHCCCCCCHhH
Q 007878 144 -GNVSVCNGLVDFYGKC--NEVGLAKVVFDGIID--K-NDVSWCSMLVV---YVQNYEEENGCQMFLTARREGVEPKDFM 214 (586)
Q Consensus 144 -~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t 214 (586)
....+++.+..++.+. +++++|...|++..+ | ++..+..+... +...++.++|++.|++..+.. +.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 1122333333333332 235555555554421 2 23333333322 223445555555555554432 122333
Q ss_pred HHHHHHHHhc----ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHH
Q 007878 215 ISSVLSACAR----IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGG 287 (586)
Q Consensus 215 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 287 (586)
+..+...+.. .++.++|.+.+.......+. +..++..+...|.+.|++++|...|++..+ | +..+|..+...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3333333222 23455566666555555433 444555556666666666666666655442 2 23344444333
Q ss_pred HHh-------------------cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCC
Q 007878 288 YAH-------------------QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK 348 (586)
Q Consensus 288 ~~~-------------------~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 348 (586)
|.. .+..++|...|++..+ .. +.+..++..+...+...|++++|+..|+..... .
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 321 2346778888888877 22 224567788889999999999999999988753 3
Q ss_pred CChH----HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007878 349 PGAE----HYACVVD-LLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 349 p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
|+.. .+..+.. .+...|+.++|+..|++. .+.|+...+... ...+..++++.++.+|+++.++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3322 2333332 245779999999999886 566665443332 334566778888899999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCccCCceee
Q 007878 423 LSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSW 456 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 456 (586)
|+.+|...|++++|.+.+++..+.|-..+...+|
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999998866443333343
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-16 Score=151.78 Aligned_cols=258 Identities=7% Similarity=-0.076 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007878 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+..+. +..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHH
Confidence 34455555555666666666666555432 224445555555556666666666666666555432 4555566666666
Q ss_pred hcCCHHHHHHHHhhCCC--C-CeeHHHHH--------------HH-HHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007878 259 KCGSIQDAEIAFNKMPE--R-NLVCWNAI--------------IG-GYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
..|++++|.+.|+++.+ | +...+..+ .. .+...|++++|.+.++++.+ .. +.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MN-PNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HS-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hC-CCCHHHHHH
Confidence 66666666666665432 1 12222222 22 36778899999999999988 32 235788889
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998764 2335788999999999999999999999987 3333 57889999999999999
Q ss_pred HHHHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 399 PELGRIAADNLFKLDPN------------DSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+++|...++++.+..|. +...+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988 6889999999999999999999998754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-13 Score=151.11 Aligned_cols=362 Identities=11% Similarity=0.023 Sum_probs=278.5
Q ss_pred HHHHHHHHhCC--CCChhhhHHHHHHHHhcCCchHHHHHhccCCC-CC-----cccHHHHHHHHHcCCChhHHHHHHHHH
Q 007878 31 QLHALALKSGQ--IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE-RN-----LATWNAYISNAVLGGRPKNAIDAFINL 102 (586)
Q Consensus 31 ~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 102 (586)
++.++.....+ ..++.--...+..|...|.+.+|+++++++.- |+ ...-|.|+.+..+. +..+..+..++.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 44444444332 22344456678888899999999999988752 22 24456677776666 556666666655
Q ss_pred HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH
Q 007878 103 RRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCS 182 (586)
Q Consensus 103 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 182 (586)
.. .....+...|...|.+++|.++|++.. ......+.++ -..+++++|.++.++.. +..+|..
T Consensus 1048 d~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsq 1110 (1630)
T 1xi4_A 1048 DN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQ 1110 (1630)
T ss_pred hh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHH
Confidence 32 123446677888999999999998852 1222223332 27889999999998774 4778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007878 183 MLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+... +..+.+.++.+|++.++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcC
Confidence 999999999999999999553 4677888999999999999999999998887663 33344469999999999
Q ss_pred HHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 263 IQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 263 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
+++...+. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++..
T Consensus 1183 leele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1183 LAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 99655443 4567778888999999999999999999874 278899999999999999999998762
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007878 343 LKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 343 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
+..+|..+..+|...|++..|....... ..++..+..++..|...|.+++|+.+++..+.++|.+...|.-
T Consensus 1249 -------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1249 -------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred -------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 4688999999999999999999877654 3455667799999999999999999999999999999999988
Q ss_pred HHHHHhhc--CChHHHHHHHH
Q 007878 423 LSNMFAAT--GRWEEADLVRK 441 (586)
Q Consensus 423 l~~~~~~~--g~~~~a~~~~~ 441 (586)
|+.+|++. ++..++.++|.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 88888753 45556665555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=175.21 Aligned_cols=150 Identities=7% Similarity=0.016 Sum_probs=127.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcC-------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH
Q 007878 143 DGNVSVCNGLVDFYGKCNEVGLAKVVFDGI-------IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMI 215 (586)
Q Consensus 143 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 215 (586)
..-..+||+||++|+++|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334578999999999999999999999775 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHH
Q 007878 216 SSVLSACARIAGL-ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYA 289 (586)
Q Consensus 216 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~ 289 (586)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.- +.+.+.+.|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 78999999999999999999999999988887766666666555542 12334444555566
Q ss_pred hcC
Q 007878 290 HQG 292 (586)
Q Consensus 290 ~~g 292 (586)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-18 Score=177.61 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=113.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007878 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-------ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+||+.|+.++|.++|++|.+ .|+.||.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~--~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD--AGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCcH
Confidence 33346789999999999999999999997753 48999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHhhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 316 VTLVCVLSACSRAGA-VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+||+++|.++++.|+ .++|.++|++|..+ |+.||..+|++++....+.+-++...++...+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999999998 47899999999876 99999999999998887765555544443333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-15 Score=144.11 Aligned_cols=262 Identities=7% Similarity=-0.070 Sum_probs=188.5
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHH
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISN 85 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 85 (586)
+...+......+...|++++|..+++.+++.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44556777788889999999999999998875 55777888889999999999999999987653 356778888889
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 007878 86 AVLGGRPKNAIDAFINLRRTGGEPDLITFCAF--------------LN-ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
+...|++++|+..|+++...... +...+..+ .. .+...|++++|...++.+++.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999998875322 22233222 11 2566677888888888887775 44667778
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccC
Q 007878 151 GLVDFYGKCNEVGLAKVVFDGII---DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG 227 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 227 (586)
.+...|.+.|++++|...|++.. ..+..+|..+...|...|++++|+..|++..+.. +.+..++..+..++...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 88888888888888888887653 2345677777777778888888888887776643 2345566666677777777
Q ss_pred cHHHHHHHHHHHHhCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007878 228 LELGRSVHAVAVKACVEG-----------NIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
+++|...+..+.+..+.. +..++..+..+|.+.|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777776655442 45566666666666677776666666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=148.95 Aligned_cols=365 Identities=12% Similarity=-0.006 Sum_probs=233.1
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCC-----------C-CCcccHHHHHHHHHcCCChhHHHHHHHHHHHC-----
Q 007878 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMP-----------E-RNLATWNAYISNAVLGGRPKNAIDAFINLRRT----- 105 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 105 (586)
.....||.|...|...|++++|++.|++.. . ....+|+.+...|...|++++|...|++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678999999999999999998887642 1 23567888889999999999999999887542
Q ss_pred C-CCC-ChhhHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhcCChHHHHHHHhcCC---CC
Q 007878 106 G-GEP-DLITFCAFLNACS--DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDF---YGKCNEVGLAKVVFDGII---DK 175 (586)
Q Consensus 106 g-~~p-~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~---~~ 175 (586)
+ ..+ ...++.....++. ..+++++|.+.|+++++.. +.+...+..+..+ +...++.++|.+.|++.. ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 112 2344554444443 3457899999999998885 3345556555555 345677777888777653 23
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHH
Q 007878 176 NDVSWCSMLVVYVQ----NYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS 251 (586)
Q Consensus 176 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (586)
+...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45566665555544 467788999998887653 445667888888999999999999999999988765 566677
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q 007878 252 ALVDMYGKC-------------------GSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRC 309 (586)
Q Consensus 252 ~li~~~~~~-------------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 309 (586)
.+...|... +..+.|...|+... ..+..+|..+...|...|++++|++.|++..+ .
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~--~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS--K 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 676666432 23566777777654 35677899999999999999999999999988 3
Q ss_pred CCCCCH--HHHHHHHH-HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHH
Q 007878 310 EAVPNY--VTLVCVLS-ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTIS 384 (586)
Q Consensus 310 g~~pd~--~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~ 384 (586)
...|.. ..+..+.. ...+.|+.++|+..|.+..+ +.|+.......+ ..+.++++.. ... .+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHH
Confidence 322222 12223222 34578999999999998864 466654333222 2233333333 122 3567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007878 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
+|..|...+...|++++|+..++++++++|.++.+...++
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 8999999999999999999999999999988776665443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-15 Score=142.41 Aligned_cols=246 Identities=11% Similarity=0.033 Sum_probs=200.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007878 184 LVVYVQNYEEENGCQMFLTARREGVEPKD--FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-.|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999998876543 34543 2445677899999999999876643 24567788899999999999
Q ss_pred CHHHHHHHHhhCC----CC-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 007878 262 SIQDAEIAFNKMP----ER-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMK 336 (586)
Q Consensus 262 ~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 336 (586)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|..
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999864 24 445667777889999999999999976 2567888899999999999999999
Q ss_pred HHHHhHHhcCCCCChHHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 337 IFYSMTLKYGIKPGAEHY---ACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 337 ~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
.|+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999865 4664322 23445555679999999999998 3335788999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCChHH-HHHHHHHHHhC
Q 007878 412 LDPNDSGNHVLLSNMFAATGRWEE-ADLVRKEMKDV 446 (586)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 446 (586)
.+|+++.++..++..+...|+.++ +.++++++.+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976 57899988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-14 Score=132.13 Aligned_cols=223 Identities=11% Similarity=-0.026 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007878 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+..+...
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------------ 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------------
Confidence 45555555666666666666666555544 4444444455555555555555555544443221100
Q ss_pred hcCCHHHHHHHHhhCCCCC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007878 259 KCGSIQDAEIAFNKMPERN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 334 (586)
++ ..+|..+...|...|++++|+..|++..+ +.|+. ..+...|++++|
T Consensus 73 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -----------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT----EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCH-------HHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCchh-------HHHHHHhHHHHH
Confidence 01 35566666677777777777777777766 22443 234555677777
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 335 MKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 335 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
...++.+... .| +...+..+...+...|++++|.+.+++. ... .+..+|..+...+...|++++|...++++++
T Consensus 125 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777542 33 3566777777788888888888888776 222 3567788888888888899999999999888
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 412 LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..|+++..+..++.+|...|++++|...+++..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888999999999999999988887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-14 Score=132.77 Aligned_cols=233 Identities=10% Similarity=-0.012 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HhHHHH
Q 007878 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIID--KNDVSWCSMLVVYVQNYEEENGCQMFLTARREG--VEPK----DFMISS 217 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 217 (586)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999987622 678899999999999999999999999987642 1122 244555
Q ss_pred HHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHH
Q 007878 218 VLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 297 (586)
+..++...|++++|...+..+.+.... ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------------------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch----------------------------------------hHHHHHHhHHHHH
Confidence 555555666666666666555554322 1234445666666
Q ss_pred HHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007878 298 LSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
...++++.. . .|+ ...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 125 ~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 125 LKKAEAEAY--V--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHH--C--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--c--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666665 2 233 455666666777777777777777776643 123456677777777777777777777776
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCchhHHHHH
Q 007878 377 M-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD------PNDSGNHVLLS 424 (586)
Q Consensus 377 m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 424 (586)
. ...| +..+|..+...+...|++++|...++++.++. |.+...+..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 6 2223 46677778888888888888888888888877 66655554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-14 Score=128.69 Aligned_cols=193 Identities=15% Similarity=0.075 Sum_probs=152.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHH
Q 007878 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVC 320 (586)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ 320 (586)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+ ..|+ ...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHH
Confidence 4566777788888889999999999888654 4567888888889999999999999999887 2354 677888
Q ss_pred HHHHhhcc-----------CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 007878 321 VLSACSRA-----------GAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWG 387 (586)
Q Consensus 321 ll~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 387 (586)
+..++... |++++|+..|+...+. .|+ ...+..+...|...|++++|++.|++. ....+...|.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHH
Confidence 88888888 9999999999999754 554 778889999999999999999999987 2116888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-14 Score=132.97 Aligned_cols=241 Identities=10% Similarity=-0.089 Sum_probs=180.8
Q ss_pred HcCChHHHHHHHHHHHHCCCC--C-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007878 189 QNYEEENGCQMFLTARREGVE--P-KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265 (586)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (586)
..|++++|+..|+++.+.... | +..++..+..++...|++++|...+..+++..+. +..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 346777888888887765321 1 3456667777778888888888888888877654 67788888888888899999
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|.+.|++..+ .+..+|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9888888753 4577888889999999999999999999987 23655555555556677799999999998876
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 343 LKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 343 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
.. .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++.+.+|++
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 54 23343344 4677778888889999999886 33332 5778889999999999999999999999999987
Q ss_pred chhHHHHHHHHhhcCChHHHHHHH
Q 007878 417 SGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
...+ ..++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 5544 55677888888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=128.77 Aligned_cols=243 Identities=13% Similarity=-0.031 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHh
Q 007878 149 CNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK--DFMISSVLSACA 223 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 223 (586)
+......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++....+-.|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455556666666666666665422 2334555666666666666666666666655221111 112444445555
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007878 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
..|++++|...+..+.+..+. +..++..+...|.+.|++++|.+.| ++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~-------------------------------~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYM-------------------------------EK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHH-------------------------------GG
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHH-------------------------------HH
Confidence 555555555555555554332 3344444444444445554444444 44
Q ss_pred hhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCC---hHHHHHHHHhC-
Q 007878 304 MTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGL---VDRAYEIIKEM- 377 (586)
Q Consensus 304 m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m- 377 (586)
..+ . .|+ ...+..+...+...+++++|...|+.+.+. .|+ ...+..+...+...|+ +++|...+++.
T Consensus 134 al~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 134 QIR--P--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GCC--S--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred Hhh--c--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 443 1 222 233333331222233555555555544432 222 3444444444444444 44444444443
Q ss_pred ---CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007878 378 ---PMRPT------ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 378 ---~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 11122 246777888888899999999999999999999988777766555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=134.41 Aligned_cols=376 Identities=10% Similarity=0.018 Sum_probs=199.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCc---hHHHHHhccCCCCCcccHHHHHHHHHcCC--
Q 007878 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLK---DDADKMFDEMPERNLATWNAYISNAVLGG-- 90 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 90 (586)
+...+.+.|++++|.+++....+.| ++..+..|..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455667789999999999998876 344555666777777877 89999998887767777777777555555
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---
Q 007878 91 ---RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL---QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE--- 161 (586)
Q Consensus 91 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~--- 161 (586)
++++|+..|++..+.|.. ..+..+...|...+.. ..+.+.+......| +......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678899999888876533 2555555555544432 23444455554454 34456666677776663
Q ss_pred -hHHHHHHHhcCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007878 162 -VGLAKVVFDGIIDKNDVSWCSMLVVYVQNY---EEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 162 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
.+.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...+....
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~----------- 227 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT----------- 227 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG-----------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-----------
Confidence 344445555555555556666666666666 6666776666666655 233333233333333220
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHH-H--HhcCCHHHHHHHHHHhhhccCCCCCC
Q 007878 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGG-Y--AHQGHADMALSSFEEMTSMRCEAVPN 314 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~g~~pd 314 (586)
...+++++|.+.|++....+..++..+... | ...|+.++|++.|++..+ .| +
T Consensus 228 --------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g---~ 282 (452)
T 3e4b_A 228 --------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--AD---Q 282 (452)
T ss_dssp --------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TT---C
T ss_pred --------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CC---C
Confidence 000344444444444332233344444433 2 235666677777766666 44 4
Q ss_pred HHHHHHHHHHhhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHH
Q 007878 315 YVTLVCVLSACSRAG-----AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR----AGLVDRAYEIIKEMPMRPTISV 385 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~ 385 (586)
...+..+...|. .| ++++|...|+... .-+...+..|..+|.. ..++++|.+.|++.-...+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 445555555554 34 6777777776653 2345555666666655 3377777777777622223344
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHH--hhcCChHHHHHHHHHHHh
Q 007878 386 WGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMF--AATGRWEEADLVRKEMKD 445 (586)
Q Consensus 386 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 445 (586)
...|...|.. ..+.++|...++++.+.+++.. ...+..+. ...++.++|.++.++-++
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4555555442 4578888888888887765433 23333332 233456677777666544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-12 Score=120.30 Aligned_cols=166 Identities=13% Similarity=-0.006 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHh
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSAC 325 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~ 325 (586)
+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.+ .+..| +...+..+...+
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHH
Confidence 33334444444444444444443321 2333444455555555555555555555544 22233 234455555556
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 007878 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
...|++++|...|+.+.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHH
Confidence 66666666666666554321 223455555566666666666666666554 222 24445555555566666666666
Q ss_pred HHHHHHhccCCCCchh
Q 007878 404 IAADNLFKLDPNDSGN 419 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~ 419 (586)
..++++.+..|+++..
T Consensus 230 ~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 230 SYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHCCCCHHH
Confidence 6666666666665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=122.99 Aligned_cols=240 Identities=11% Similarity=-0.013 Sum_probs=155.8
Q ss_pred cCCChhHHHHHHHHHHHCCCC--C-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007878 88 LGGRPKNAIDAFINLRRTGGE--P-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
..|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888775321 1 34567777778888888888888888888775 4467788888888888888888
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 007878 165 AKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241 (586)
Q Consensus 165 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (586)
|...|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877633 35677888888888888888888888888774 355444444445556667777777777766665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC
Q 007878 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN-------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN 314 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd 314 (586)
... +...+. ++..+...++.++|.+.++...+.+ ..+|..+...|...|++++|...|++... . .|+
T Consensus 174 ~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~p~ 247 (275)
T 1xnf_A 174 SDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--N--NVH 247 (275)
T ss_dssp SCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T--CCT
T ss_pred CCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--C--Cch
Confidence 433 333333 5555666666666776666655421 34556666666666666666666666665 2 242
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHH
Q 007878 315 YVTLVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~ 338 (586)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 111233444555555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=118.21 Aligned_cols=194 Identities=12% Similarity=-0.038 Sum_probs=115.4
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007878 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
+...|..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4556666667777777777777777777664322 45566666677777777777777777777764 345566667777
Q ss_pred HHHhc-----------CChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007878 155 FYGKC-----------NEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLS 220 (586)
Q Consensus 155 ~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 220 (586)
+|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77766 666666666665522 234556666666666666666666666666554 45555666666
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007878 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 273 (586)
++...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665543 4555556666666666666666665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-12 Score=120.37 Aligned_cols=228 Identities=10% Similarity=-0.031 Sum_probs=161.2
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh----hHHHHH
Q 007878 111 LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--KNDV----SWCSML 184 (586)
Q Consensus 111 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 184 (586)
...+......+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667778889999999999999999875 44566899999999999999999999988754 3333 388999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCCH
Q 007878 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV-DMYGKCGSI 263 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 263 (586)
..|...|++++|++.|++..+.. +.+...+..+...+...|++++|...+...++..+. +..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998853 335678888999999999999999999988877443 555666666 4444 3477
Q ss_pred HHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCC---HHHHHHHHHHhhhccCCCCCCH------HHHHHHHHHhhccCCH
Q 007878 264 QDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGH---ADMALSSFEEMTSMRCEAVPNY------VTLVCVLSACSRAGAV 331 (586)
Q Consensus 264 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~g~~pd~------~t~~~ll~a~~~~g~~ 331 (586)
++|.+.|++..+ | +...|..+...+...|+ .++|...|++..+.. .-.|+. .+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC-APGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 777776666543 2 34455555555665565 566666666665521 111221 3444555555555666
Q ss_pred HHHHHHHHHhHH
Q 007878 332 EKGMKIFYSMTL 343 (586)
Q Consensus 332 ~~a~~~~~~~~~ 343 (586)
++|...|+.+.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=127.94 Aligned_cols=243 Identities=8% Similarity=-0.044 Sum_probs=192.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccC-cHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007878 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG-LELGRSVHAVAVKACVEGNIFVGSALVD 255 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 255 (586)
...|+.+...+.+.|++++|++.|++..... +-+...|..+..++...|+ +++|...+.++++..+. +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3467778888888888999999888888743 2245667777788888886 89999999888888766 7788888888
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhc-cCC
Q 007878 256 MYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSR-AGA 330 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~-~g~ 330 (586)
+|.+.|++++|...|+++.+ .+..+|..+..++...|++++|+..|+++++ . .| +...|+.+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--E--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHhcCc
Confidence 89999999999999988764 5678888899999999999999999999988 2 34 46788888888888 566
Q ss_pred HHHH-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC----
Q 007878 331 VEKG-----MKIFYSMTLKYGIKPG-AEHYACVVDLLGRAG--LVDRAYEIIKEMPMRP-TISVWGALLNACRVYG---- 397 (586)
Q Consensus 331 ~~~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~---- 397 (586)
.++| +..|+..++. .|+ ...|..+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4778877653 554 678888888888888 6899999888874444 4677888888887764
Q ss_pred -----CHHHHHHHHHHH-hccCCCCchhHHHHHHHHh
Q 007878 398 -----KPELGRIAADNL-FKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 398 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 428 (586)
..++|+.+++++ .+++|.....|..++..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999999 8999998888887776554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-12 Score=130.85 Aligned_cols=343 Identities=10% Similarity=-0.028 Sum_probs=178.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007878 82 YISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL---QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK 158 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 158 (586)
+...+.+.|++++|+++|++..+.| +...+..+-..+...|+. ++|...++...+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445566777777777777776655 223333344444445555 6777777766643 34445555554444
Q ss_pred cC-----ChHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChHH---HHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007878 159 CN-----EVGLAKVVFDGIIDK-NDVSWCSMLVVYVQNYEEEN---GCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 159 ~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
.+ +.++|...|++..++ +...+..|...|...+..++ +.+.+......| +......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 44 566777777665433 34466666666666554333 344444444333 2334444455555555444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc----CCHHHHHH
Q 007878 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCG---SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ----GHADMALS 299 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~ 299 (586)
.+........+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44333333333222233346666777777777 67777777766543 2223335555555443 46777777
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHH-h--hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----ChHHHH
Q 007878 300 SFEEMTSMRCEAVPNYVTLVCVLSA-C--SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-----LVDRAY 371 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~ 371 (586)
.|++.. . -+...+..+... + ...+++++|...|+...+. | +...+..|..+|. .| ++++|.
T Consensus 239 ~~~~aa-~-----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 239 LLEKIA-P-----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHG-G-----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHc-C-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 777654 1 133444444444 2 4467777777777776542 3 4555666666665 44 777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHH
Q 007878 372 EIIKEMPMRPTISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA----TGRWEEADLVRKEM 443 (586)
Q Consensus 372 ~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 443 (586)
+.|++.- ..+...+..|...|.. ..+.++|...++++.+.+ ++.....|+.+|.. ..+.++|...++..
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 7777766 5456666666655544 236777777777766643 34566666666654 34677777777777
Q ss_pred HhCCC
Q 007878 444 KDVGI 448 (586)
Q Consensus 444 ~~~g~ 448 (586)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 66654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-12 Score=121.17 Aligned_cols=197 Identities=11% Similarity=-0.027 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~ 323 (586)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|.+.|+++.+ .. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HC-cCcHHHHHHHHH
Confidence 45677788888888999999888887653 4667888999999999999999999999988 32 235778888999
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007878 324 ACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
.+...|++++|..+|+.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999875 23455 4678889999999999999999999987 3333 5788999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+|...++++.+..|++...+..++.+|...|++++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999998743
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=117.30 Aligned_cols=196 Identities=12% Similarity=-0.008 Sum_probs=136.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.+ .. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hC-CCChHHHHHHH
Confidence 345556666666777777777777666542 3455667777777777777777777777766 21 22456677777
Q ss_pred HHhhcc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007878 323 SACSRA-GAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 323 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
..+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 777777 777777777777765 223333 566677777777788888887777776 2223 46677777777888888
Q ss_pred HHHHHHHHHHHhccCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 399 PELGRIAADNLFKLDP-NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+++|...++++.+..| ++...+..++..+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888888877 7777777777777788888888888877764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=117.83 Aligned_cols=225 Identities=9% Similarity=-0.085 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----ccCcHHHHHHHHHHHHhCCCCchhHHH
Q 007878 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR----IAGLELGRSVHAVAVKACVEGNIFVGS 251 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (586)
++.++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555666666666666666665552 233444444455555 555556655555555543 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 252 ALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAIIGGYAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 252 ~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
.+...|.. .|++++|.+.|++..+ .+..++..+...|.. .|++++|+..|++..+ .+ +...+..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh--cC---cHHHHHHHH
Confidence 55555555 5555555555554332 233444555555555 5555555555555555 22 333444444
Q ss_pred HHhhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007878 323 SACSR----AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR----AGLVDRAYEIIKEMPMRPTISVWGALLNACR 394 (586)
Q Consensus 323 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 394 (586)
..|.. .+++++|...|+...+. .+...+..+...|.. .+++++|++.|++.-...+...+..+...+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44444 55555555555555432 123344444444444 4555555555544311112334444444444
Q ss_pred H----cCCHHHHHHHHHHHhccCCC
Q 007878 395 V----YGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 395 ~----~~~~~~a~~~~~~~~~~~p~ 415 (586)
. .+++++|...++++.+.+|+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 4 44555555555555544443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-12 Score=115.29 Aligned_cols=207 Identities=9% Similarity=-0.008 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007878 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
...|..+...+...|++++|++.|++..+. .+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~-~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DPK-NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------Ccc-chHHHHHHHHH
Confidence 345555556666666666666666655543 221 23344444555
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc-CCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCH
Q 007878 257 YGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ-GHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAV 331 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~ 331 (586)
|...|++++|.+.|++..+ .+..+|..+...|... |++++|...|+++.+ .+..|+ ...+..+..++...|++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCH
Confidence 5555555555555554432 2344566666667777 777777777777765 322333 45666777777777788
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007878 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR--PTISVWGALLNACRVYGKPELGRIAADN 408 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 408 (586)
++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.|...++.
T Consensus 130 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8887777777653 1223667777777888888888888888776 222 3556666677777888888888888888
Q ss_pred HhccCCCCchhHHHH
Q 007878 409 LFKLDPNDSGNHVLL 423 (586)
Q Consensus 409 ~~~~~p~~~~~~~~l 423 (586)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 888888877665443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-13 Score=123.80 Aligned_cols=172 Identities=9% Similarity=-0.005 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh
Q 007878 249 VGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC 325 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~ 325 (586)
.+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|.+.|+++.+ .. +.+...+..+...+
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHH
Confidence 333344444444444444444443321 2334444555555555555555555555554 11 12344555555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 007878 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 6666666666666655432 1223455555556666666666666666554 111 23555666666666666666666
Q ss_pred HHHHHHhccCCCCchhHHHHHH
Q 007878 404 IAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
..++++.+..|+++..+..+..
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHccCcchHHHHHHHHH
Confidence 6666666666666555544433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-11 Score=116.64 Aligned_cols=224 Identities=9% Similarity=-0.050 Sum_probs=194.1
Q ss_pred CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHH
Q 007878 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAII 285 (586)
Q Consensus 211 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 285 (586)
+..++..+...+...|++++|...+....+.+ +...+..+...|.. .|++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45567777788889999999999999999843 56778889999999 9999999999998754 4778888899
Q ss_pred HHHHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007878 286 GGYAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 286 ~~~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
..|.. .+++++|+..|++..+ .+ +...+..+...|.. .+++++|+..|+...+. + +...+..+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACD--LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHH--cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 99999 9999999999999998 44 67888888889998 99999999999999764 3 56778888
Q ss_pred HHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 007878 358 VDLLGR----AGLVDRAYEIIKEMPMRPTISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA 429 (586)
Q Consensus 358 i~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (586)
...|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 888988 99999999999987222467888889999999 9999999999999999876 6788899999999
Q ss_pred ----cCChHHHHHHHHHHHhCCC
Q 007878 430 ----TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 430 ----~g~~~~a~~~~~~m~~~g~ 448 (586)
.+++++|.+.+++..+.|.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988663
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-13 Score=122.25 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=155.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007878 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ .. +.+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LD-SSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CcchHHHHHH
Confidence 3456677788888999999999999988754 4667888899999999999999999999988 32 2357888889
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKP 399 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~ 399 (586)
...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999764 2346778899999999999999999999987 323 3678899999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=129.73 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=153.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhcccCcHHHHHHHHHHHHh----CCC-CchhHHHH
Q 007878 182 SMLVVYVQNYEEENGCQMFLTARREGVEPK----DFMISSVLSACARIAGLELGRSVHAVAVKA----CVE-GNIFVGSA 252 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 252 (586)
.....+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+.++... +.. ....++..
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33344444444444444444444331 111 123333444444444444444444443321 101 11334455
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 007878 253 LVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGH--------------------ADMALSSFEE 303 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 303 (586)
+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 55556666666666665555432 11 2355566666666666 6777776666
Q ss_pred hhhcc--CCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHh
Q 007878 304 MTSMR--CEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 304 m~~~~--~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
..... .+-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 54310 111111 345667777788888888888888776643211222 33677777888888888888888877
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 377 M----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 377 m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11112 4567777788888888888888888888764322 45777888888899999999988888
Q ss_pred HHh
Q 007878 443 MKD 445 (586)
Q Consensus 443 m~~ 445 (586)
..+
T Consensus 333 al~ 335 (406)
T 3sf4_A 333 HLE 335 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-13 Score=133.45 Aligned_cols=198 Identities=11% Similarity=-0.021 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCeeHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 007878 248 FVGSALVDMYGKCGSIQDAEIAFNKMPE---------RNLVCWNAIIGGYAHQGH-----------------ADMALSSF 301 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 301 (586)
.++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444555555555665555555554332 112355556666666666 66666666
Q ss_pred HHhhhcc--CCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHH
Q 007878 302 EEMTSMR--CEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 302 ~~m~~~~--~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
++..+.. .+-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 6654310 01111 1346667777788888888888888776543211112 236777788888888888888888
Q ss_pred HhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CchhHHHHHHHHhhcCChHHHHHHH
Q 007878 375 KEM-PM---RP----TISVWGALLNACRVYGKPELGRIAADNLFKLDPN------DSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 375 ~~m-~~---~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
++. .. .. ...++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 775 11 11 1456777888888899999999999888876432 2347788899999999999999999
Q ss_pred HHHHh
Q 007878 441 KEMKD 445 (586)
Q Consensus 441 ~~m~~ 445 (586)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=125.94 Aligned_cols=262 Identities=12% Similarity=0.037 Sum_probs=170.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHhcccCcHHHHHHHHHHHHh----CCC-CchhHHHH
Q 007878 183 MLVVYVQNYEEENGCQMFLTARREGVEPK-----DFMISSVLSACARIAGLELGRSVHAVAVKA----CVE-GNIFVGSA 252 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 252 (586)
....+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+....+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555566666666665555532 22 134445555555566666666665554432 111 12445566
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 007878 253 LVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGH--------------------ADMALSSFEE 303 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 303 (586)
+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66677777777777777666432 11 2366667777777777 7777777776
Q ss_pred hhhcc--CCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHh
Q 007878 304 MTSMR--CEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 304 m~~~~--~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
..... .+-.| ...++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64410 11111 1346777778888889999999888877643211122 33677888888999999999988887
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 377 M----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 377 m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
. +..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 4567778888999999999999999988864322 34777899999999999999999999
Q ss_pred HHhC
Q 007878 443 MKDV 446 (586)
Q Consensus 443 m~~~ 446 (586)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-12 Score=124.28 Aligned_cols=224 Identities=12% Similarity=0.032 Sum_probs=191.9
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CCeeHHHHHHHHH
Q 007878 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS-IQDAEIAFNKMPE---RNLVCWNAIIGGY 288 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~~~ 288 (586)
..|..+..++...|++++|...+..+++..+. +..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 35666777788899999999999999998866 78889999999999997 9999999999864 5678999999999
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHh-cC
Q 007878 289 AHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGR-AG 365 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g 365 (586)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+.+++. .| +...|+.+..+|.+ .|
T Consensus 177 ~~~g~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHccCHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999982 35 5788999999999999999999999999864 45 47889999999999 66
Q ss_pred ChHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-----
Q 007878 366 LVDRA-----YEIIKEM-PMRP-TISVWGALLNACRVYG--KPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG----- 431 (586)
Q Consensus 366 ~~~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----- 431 (586)
..++| ++.+++. .+.| +...|..+...+...| ++++|+..+.++ +.+|+++..+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 65777 4777776 4445 5778999998888888 689999999998 889999999999999999874
Q ss_pred ----ChHHHHHHHHHH-Hh
Q 007878 432 ----RWEEADLVRKEM-KD 445 (586)
Q Consensus 432 ----~~~~a~~~~~~m-~~ 445 (586)
..++|.++++++ .+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE 347 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 358999999998 54
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-12 Score=127.08 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----h
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----A 351 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 351 (586)
+|..+...|...|++++|...+++..+.... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3444445555555555555555554431000 011 225555666666666666666666655432111111 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCc
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLD------PNDS 417 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~ 417 (586)
.++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++.++. +...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 45666666777777777777766664 11112 4566777777888888888888888877753 2235
Q ss_pred hhHHHHHHHHhhcCChH
Q 007878 418 GNHVLLSNMFAATGRWE 434 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~ 434 (586)
.++..++.+|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56778888888888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-13 Score=135.41 Aligned_cols=191 Identities=9% Similarity=-0.003 Sum_probs=154.3
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSI-QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
+...+..+...|...|++ ++|.+.|++..+ .+..+|..+...|...|++++|++.|++..+ +.|+...+..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT----HCKNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCHHHHHHH
Confidence 555666666666667777 777777666542 3456777888888888888888888888877 34777788888
Q ss_pred HHHhhcc---------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC-
Q 007878 322 LSACSRA---------GAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRA--------GLVDRAYEIIKEM-PMRP- 381 (586)
Q Consensus 322 l~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p- 381 (586)
...+... |++++|+..|++..+. .| +...|..+..+|... |++++|++.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 8888888 8899999999888754 34 477888888888888 8899999999887 4445
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 382 ---TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 382 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+...|..+..++...|++++|...++++.+++|+++..+..++.++...|++++|.+.+.++
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999999999999999999999999999999999999999998765443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=108.74 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=133.3
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007878 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
+...|..+...|.+.|++++|++.|++..+ . .| +..++..+..++.+.|++++|...+...... .+.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--A--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHH
Confidence 456777888888888888888888888877 2 34 4667788888888888888888888888653 233456677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.+...+...+++++|.+.+.+. ...| +...+..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 7778888888898888888876 2233 5678888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 007878 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
++|.+.+++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-12 Score=126.52 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC----Ch
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP----GA 351 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 351 (586)
+|..+...|...|++++|+..|++..+.... .++ ..++..+...+...|++++|...|+.......-.. ..
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4444555555555555555555555441000 011 12555666666666777777666666543211111 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
..+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++.++.+
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 56666777777777777777777665 11 111 34677778888888999999999998888765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.6e-12 Score=121.36 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=50.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT----IS 384 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~ 384 (586)
++..+...+...|++++|...++.......-.++ ...+..+...|...|++++|.+.+++. .. .++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444444455555555555555444322110111 334455555566666666665555554 10 011 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007878 385 VWGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566666777777777777777777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-09 Score=113.26 Aligned_cols=200 Identities=7% Similarity=-0.042 Sum_probs=89.4
Q ss_pred HhHHHHHHHHHhcccCcHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC
Q 007878 212 DFMISSVLSACARIAGLELGR-SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-------------RN 277 (586)
Q Consensus 212 ~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~ 277 (586)
...|.....-+...|+.+.|. .+++..+...+ .+...+-.++...-+.|+++.|.++|+++.+ |+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 333444444444445555553 55555554332 2344444455555555555555555554432 11
Q ss_pred ------------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc-cCCHHHHHHHHHHhHHh
Q 007878 278 ------------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR-AGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 278 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~ 344 (586)
...|...+....+.|..+.|..+|.+..+ ..-.+....|......-.+ .++.+.|..+|+...+.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR--LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11344444444445555555555555544 2000111122111111111 23355555555555543
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 345 YGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP----TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
+ +-+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|++
T Consensus 500 ~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 F--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp H--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred C--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2 222334445555555555555555555554 1112 12345555555555555555555555555555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=122.45 Aligned_cols=196 Identities=12% Similarity=0.034 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC---
Q 007878 248 FVGSALVDMYGKCGSIQDAEIAFNKMPE-----RN-----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--- 314 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--- 314 (586)
.++..+...|...|++++|...+++..+ ++ ..+++.+...|...|++++|++.|++..+..... ++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 222 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE-KQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc-CChHH
Confidence 3444555555555555555555544331 11 2355566666667777777777766665411100 11
Q ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC---
Q 007878 315 -YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT--- 382 (586)
Q Consensus 315 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~--- 382 (586)
..++..+...|...|++++|...|++..+-. +..| ...++..+...|.+.|++++|.+.+++. .. .++
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2356667777777777777777777665411 1212 2456677777777777777777777765 11 012
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 383 ISVWGALLNACRVYGK---PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
...+..+...+...|+ .++|+..+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1224455555666676 66666666665 22233445677788888888888888888888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-09 Score=114.25 Aligned_cols=416 Identities=8% Similarity=-0.014 Sum_probs=280.0
Q ss_pred HHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCC---hhHHHHHHHH
Q 007878 28 TGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGR---PKNAIDAFIN 101 (586)
Q Consensus 28 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~ 101 (586)
.-...++..++.+ +.|...|..++..+.+.+.++.|..+|+.+.. | ....|..-+..-.+.|+ ++.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444566666665 67899999999999999999999999998865 3 45568888888888888 9999999999
Q ss_pred HHHCC-CCCChhhHHHHHHHHhcCCCh--------HHHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHHh---------cC
Q 007878 102 LRRTG-GEPDLITFCAFLNACSDCSLL--------QLGRQLHGFLVRS-GF-DGN-VSVCNGLVDFYGK---------CN 160 (586)
Q Consensus 102 m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~ll~~~~~---------~g 160 (586)
..... ..|+...|..-+.-..+.++. +...++|+.++.. |. .++ ...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98754 137777776666544433332 3455788877654 66 554 4678877776542 34
Q ss_pred ChHHHHHHHhcCCC-C--C-hhhHH---HHHHHH----------HHcCChHHHHHHHHHHHH--CCCC------------
Q 007878 161 EVGLAKVVFDGIID-K--N-DVSWC---SMLVVY----------VQNYEEENGCQMFLTARR--EGVE------------ 209 (586)
Q Consensus 161 ~~~~A~~~~~~~~~-~--~-~~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~g~~------------ 209 (586)
+++.+.++|++... | + ...|. .+...+ -...+++.|...+.++.. .++.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 57788999988754 2 1 12232 221111 001223445555554432 1111
Q ss_pred ---C--C---H---hHHHHHHHHHhccc-------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHH
Q 007878 210 ---P--K---D---FMISSVLSACARIA-------GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE-IAF 270 (586)
Q Consensus 210 ---p--~---~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~ 270 (586)
| + . ..|...+.---..+ ..+.+..+|++.+...+. +..+|-..+..+...|+.++|. ++|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 0 12222222211111 123345678888776544 6778888888888899999996 999
Q ss_pred hhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--------CCCCCC------------HHHHHHHHHHhhc
Q 007878 271 NKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR--------CEAVPN------------YVTLVCVLSACSR 327 (586)
Q Consensus 271 ~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~g~~pd------------~~t~~~ll~a~~~ 327 (586)
++... | +...|-..+...-+.|++++|.++|+++.... .. .|+ ...|...+....+
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED-DPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc-cCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 88653 3 45567788888889999999999999998620 00 132 2357777777788
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-LVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
.|..+.|+.+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+.-....|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 899999999999997641 1223445544444444554 589999999987 222356677888888888999999999
Q ss_pred HHHHHhccCCC---CchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 405 AADNLFKLDPN---DSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 405 ~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+|++++...|+ ....+...+..-.+.|+.+.+.++.+++.+.-
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998873 44567777777788999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-10 Score=107.45 Aligned_cols=217 Identities=9% Similarity=-0.002 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-------cccCc-------HHHHHHHHHHHHh-CCCCchhHHHHHHHHHH
Q 007878 194 ENGCQMFLTARREGVEPKDFMISSVLSACA-------RIAGL-------ELGRSVHAVAVKA-CVEGNIFVGSALVDMYG 258 (586)
Q Consensus 194 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 258 (586)
++|+..|++..... +-+...|......+. +.|+. ++|..++++.++. .+. +...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45666666666532 234444555444443 24664 7777777777763 332 5567777777777
Q ss_pred hcCCHHHHHHHHhhCCC--CC-ee-HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh-hccCCHHH
Q 007878 259 KCGSIQDAEIAFNKMPE--RN-LV-CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC-SRAGAVEK 333 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~--~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~-~~~g~~~~ 333 (586)
+.|++++|.++|++..+ |+ .. .|..+...+.+.|++++|..+|++..+ .. +++...|....... ...|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--ST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 78888888888877654 32 32 677777777778888888888888776 22 12333443332222 13578888
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007878 334 GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P---MRP--TISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
|..+|+...+.. +-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++
T Consensus 188 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888776542 224667777777778888888888888776 2 244 35677777777777888888888888
Q ss_pred HHhccCCCCc
Q 007878 408 NLFKLDPNDS 417 (586)
Q Consensus 408 ~~~~~~p~~~ 417 (586)
++.+..|++.
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 8888777644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-12 Score=122.69 Aligned_cols=242 Identities=13% Similarity=0.048 Sum_probs=122.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh------CC
Q 007878 177 DVSWCSMLVVYVQNYEEENGCQMFLTARRE-------GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA------CV 243 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 243 (586)
..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888889999998888887662 11223345556666667777777777777666553 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHH
Q 007878 244 -EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCV 321 (586)
Q Consensus 244 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~l 321 (586)
.....++..+...|...|++++|...|++..+ ++++... +-.| ....+..+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~---~~~~~~~~~~~~l 159 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG---KDHPDVAKQLNNL 159 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC---TTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC---CCChHHHHHHHHH
Confidence 11234455555556666666666555554321 0000000 0011 12334444
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCC----
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKY-----GIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-P---------MRP---- 381 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p---- 381 (586)
...+...|++++|..+|+.+.... +..| ....+..+...|.+.|++++|.+.++++ . ..+
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 444445555555555554443210 0011 1234444555555555555555555443 0 001
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 382 ---TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
....+..+...+...+.+.++...++......|....++..++.+|...|++++|.+++++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222233344455566666667777767777777888888888888888888888887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-11 Score=127.99 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=131.0
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYA 355 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 355 (586)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..+|.+.|++++|+..|++..+. .|+ ...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 45677778888888888888888888877 3354 677888888888888888888888887643 554 67788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|+|
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 8888888888888888888876 4444 4678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007878 434 EEADLVRKEMKD 445 (586)
Q Consensus 434 ~~a~~~~~~m~~ 445 (586)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=110.96 Aligned_cols=212 Identities=9% Similarity=-0.001 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-CeeHHHHHHHHHHh
Q 007878 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYG-------KCGSI-------QDAEIAFNKMPE---R-NLVCWNAIIGGYAH 290 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~ 290 (586)
+.|..+|+++++..+. +...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6777888888887654 6778887877775 35885 899999998653 3 45689999999999
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCH-H-HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-hcCCh
Q 007878 291 QGHADMALSSFEEMTSMRCEAVPNY-V-TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLG-RAGLV 367 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~g~~pd~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~ 367 (586)
.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|+...+. .+++...|........ ..|++
T Consensus 112 ~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999988 44653 3 7889999999999999999999999753 1334555554444432 36999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CchhHHHHHHHHhhcCChHHHHHHHH
Q 007878 368 DRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKL---DPN-DSGNHVLLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 368 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (586)
++|.++|++. ... .+...|..++..+...|++++|..+|+++++. .|+ ....+..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999987 222 36788999999999999999999999999996 443 56688888999999999999999999
Q ss_pred HHHhCC
Q 007878 442 EMKDVG 447 (586)
Q Consensus 442 ~m~~~g 447 (586)
++.+..
T Consensus 266 ~a~~~~ 271 (308)
T 2ond_A 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 998743
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-11 Score=104.46 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=135.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+... .. +-+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-chhHHHHHHHH
Confidence 566788888888888888888888888653 4567788888888999999999999988877 22 22456677777
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
..+...++++.|...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999888753 2334677888889999999999999999887 3334 5778999999999999999
Q ss_pred HHHHHHHHHhccCCCCc
Q 007878 401 LGRIAADNLFKLDPNDS 417 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~ 417 (586)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999998753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-09 Score=107.06 Aligned_cols=261 Identities=13% Similarity=0.032 Sum_probs=166.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-c----hhHHHHHHH
Q 007878 185 VVYVQNYEEENGCQMFLTARREGVEPKDF----MISSVLSACARIAGLELGRSVHAVAVKACVEG-N----IFVGSALVD 255 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~ 255 (586)
..+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+.+..+..... + ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666666666666655532111211 23344455556677777776666655432111 1 223455667
Q ss_pred HHHhcCCHHHHHHHHhhCCC-------C----CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC--CHHHHHHHH
Q 007878 256 MYGKCGSIQDAEIAFNKMPE-------R----NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP--NYVTLVCVL 322 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p--d~~t~~~ll 322 (586)
.|...|++++|...+++..+ + ....+..+...+...|++++|...+++.........| ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 77778888888777766532 1 1234555677788888888888888887662121112 134567777
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA-----CVVDLLGRAGLVDRAYEIIKEM-PMRPT-----ISVWGALLN 391 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~ 391 (586)
..+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 888888999999999888764321111111121 2334577899999999999887 22221 335667778
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC-----C-chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 392 ACRVYGKPELGRIAADNLFKLDPN-----D-SGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+...|++++|...++++.+..+. + ...+..++.++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999988775322 1 13667788889999999999999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=116.31 Aligned_cols=231 Identities=8% Similarity=-0.035 Sum_probs=161.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC------chhHHH
Q 007878 183 MLVVYVQNYEEENGCQMFLTARREG-VEPK----DFMISSVLSACARIAGLELGRSVHAVAVKACVEG------NIFVGS 251 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 251 (586)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+.+..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445566677777777777665421 0122 2355566666677777777777776666532111 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCCC-HHHHH
Q 007878 252 ALVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVPN-YVTLV 319 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~pd-~~t~~ 319 (586)
.+...|...|++++|.+.|++..+ ++ ..+|+.+...|...|++++|++.|++..+.. .+..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888877653 11 1377888888999999999999998877610 122233 56788
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007878 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPG---AEHYACVVDLLGRAGL---VDRAYEIIKEMPMRPT-ISVWGALLNA 392 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 392 (586)
.+...+.+.|++++|...++.......-.++ ...+..+...|...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8899999999999999999887643211112 3345678888888998 8999999999865544 3466778888
Q ss_pred HHHcCCHHHHHHHHHHHhccC
Q 007878 393 CRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~ 413 (586)
|...|++++|...++++.++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-10 Score=100.38 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007878 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLL 361 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 361 (586)
..+...+...|++++|...|+++.+ .. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYD--AD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCC--TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 3334444444555555555544443 11 123444444555555555555555555555432 122344555555555
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 007878 362 GRAGLVDRAYEIIKEM-P-MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
...|++++|.+.++++ . .+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666554 1 1234566677777777778888888888888888887777888888888888888888888
Q ss_pred HHHHHhC
Q 007878 440 RKEMKDV 446 (586)
Q Consensus 440 ~~~m~~~ 446 (586)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8877653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=119.32 Aligned_cols=244 Identities=11% Similarity=0.067 Sum_probs=148.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 007878 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGIID--------K---NDVSWCSMLVVYVQNYEEENGCQMFLTARRE------G 207 (586)
Q Consensus 145 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 207 (586)
+..++..+...|...|++++|..+|++..+ . ....+..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467789999999999999999999988744 2 2456888999999999999999999998764 2
Q ss_pred CCC-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC------CCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Q 007878 208 VEP-KDFMISSVLSACARIAGLELGRSVHAVAVKAC------VEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLV 279 (586)
Q Consensus 208 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 279 (586)
-.| ...++..+...+...|++++|...+..+.+.. ..| ...++..+...|...|++++|.+.|++..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---- 181 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE---- 181 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 223 34567788889999999999999998887642 111 233455555556666666666555544321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc------CCCCC--
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY------GIKPG-- 350 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-- 350 (586)
+++.... +-.|+ ..++..+...+...|++++|...|+.+.+.. ...+.
T Consensus 182 --------------------~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 182 --------------------IYQTKLG---PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp --------------------HHHHTSC---TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred --------------------HHHHHhC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 0110000 00121 2344555555555566666655555554310 01111
Q ss_pred -----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 351 -----AEHYACVVDLLGRAGLVDRAYEIIKEMP-MRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 351 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
...+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1222233334445556666666666652 223 4567888888999999999999999999887664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-10 Score=116.71 Aligned_cols=207 Identities=10% Similarity=-0.044 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 007878 193 EENGCQMFLTARREGVEPKDFMISSVLSACARIAGL-ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFN 271 (586)
Q Consensus 193 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 271 (586)
+++++..+.+..... +.+...+..+..++...|++ ++|...+.++++..+. +...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666555432 33566677777788888888 8888888888877654 57788888888888888888888888
Q ss_pred hCCC--CCeeHHHHHHHHHHhc---------CCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhcc--------CCH
Q 007878 272 KMPE--RNLVCWNAIIGGYAHQ---------GHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRA--------GAV 331 (586)
Q Consensus 272 ~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~--------g~~ 331 (586)
+..+ |+...|..+...|... |++++|++.|++..+ . .| +...+..+..+|... |++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--M--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8654 6667777888888888 889999999998887 2 24 467788888888888 889
Q ss_pred HHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007878 332 EKGMKIFYSMTLKYGIKP----GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIA 405 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 405 (586)
++|+..|+...+. .| +...|..+..+|.+.|++++|.+.|++. ...| +...|..+...+...|++++|...
T Consensus 238 ~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888753 45 5788888889999999999999999887 3334 456778888888888888877765
Q ss_pred HHH
Q 007878 406 ADN 408 (586)
Q Consensus 406 ~~~ 408 (586)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-10 Score=98.34 Aligned_cols=168 Identities=12% Similarity=-0.008 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~ 323 (586)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...+...|++++|...++++.+ .. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHH
Confidence 44567788889999999999999999875 4567888899999999999999999999988 32 235778888999
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 007878 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~ 401 (586)
.+...|++++|...++.+... .+.+...+..+...+...|++++|.+.++++ .. ..+..++..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999764 2446788889999999999999999999987 22 2367889999999999999999
Q ss_pred HHHHHHHHhccCCCCchh
Q 007878 402 GRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~ 419 (586)
|...++++.+..|++...
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999998876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-10 Score=112.82 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCC-CH
Q 007878 249 VGSALVDMYGKCGSIQDAEIAFNKMPE-----RN-----LVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVP-NY 315 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~p-d~ 315 (586)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+.. .+-.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 444455555555555555555444321 11 2345556666666666666666666655411 11011 12
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PM--RPT-ISV 385 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~ 385 (586)
.++..+...|...|++++|...|++...-. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666667777777777777777665411 11222456666777777777777777777665 11 122 223
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 386 WGALLNACRVYGK---PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 386 ~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..+...+...++ +++|+..+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555556 56666666552 11233344566788888888888888888877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-10 Score=101.48 Aligned_cols=204 Identities=9% Similarity=0.043 Sum_probs=150.6
Q ss_pred CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHH
Q 007878 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIG 286 (586)
Q Consensus 210 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 286 (586)
.|+..+......+...|++++|...+...++..+.++...+..+...|.+.|++++|.+.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356677778888889999999999999999888756777777788899999999999999988653 34567888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCC-H-------HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC---hHHHH
Q 007878 287 GYAHQGHADMALSSFEEMTSMRCEAVPN-Y-------VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG---AEHYA 355 (586)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~ 355 (586)
.|...|++++|++.|++..+ ..|+ . ..|..+...+...|++++|+..|+.+. .+.|+ ...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~ 157 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK----AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALY 157 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHH
Confidence 89999999999999999887 2344 3 457777778888899999999998886 34665 46677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM-P-MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
.+...|...|+. .++++ . ...+...|..+. ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus 158 ~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 158 SLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777777665543 22222 1 112344444333 23455689999999999999999987777766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-08 Score=99.78 Aligned_cols=157 Identities=7% Similarity=-0.148 Sum_probs=76.5
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCC----hhHHHHHHH
Q 007878 84 SNAVLGGRPKNAIDAFINLRRTGGEPDLI----TFCAFLNACSDCSLLQLGRQLHGFLVRSGF-DGN----VSVCNGLVD 154 (586)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ll~ 154 (586)
..+...|++++|...+++........+.. .+..+...+...|+++.|.+.+++..+... ..+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455677777777777765543222221 233444455566777777776666554310 011 122444555
Q ss_pred HHHhcCChHHHHHHHhcCCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHhHHHHHH
Q 007878 155 FYGKCNEVGLAKVVFDGIID-------K----NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE--P--KDFMISSVL 219 (586)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 219 (586)
.|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666665554311 0 1123344445555556666666555555432111 0 112333344
Q ss_pred HHHhcccCcHHHHHHHHHHHH
Q 007878 220 SACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~ 240 (586)
..+...|++++|...+.+...
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555554443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-09 Score=98.72 Aligned_cols=187 Identities=11% Similarity=-0.074 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHH
Q 007878 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVC 320 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ 320 (586)
|+..+..+...|.+.|++++|.+.|++..+ ++...|..+..++...|++++|++.|++..+ ..|+ ...+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~ 81 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNLANAYIG 81 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcchHHHHHH
Confidence 456666777777788888888887776542 4556666677777778888888888887776 2344 456777
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCC-h-------HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHH
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPG-A-------EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT---ISVWGA 388 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ 388 (586)
+...+...|++++|+..|+...+. .|+ . ..|..+...+...|++++|++.|++. ...|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 777777888888888888777653 333 3 34666667777777777777777776 45555 345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...+.. .+...++++..+.+.+...|.... ....+.+++|...+++..+.
T Consensus 159 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5555543 344456666666665544443332 33456679999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=101.85 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=156.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC------CchhHHHH
Q 007878 184 LVVYVQNYEEENGCQMFLTARREGV-EPK----DFMISSVLSACARIAGLELGRSVHAVAVKACVE------GNIFVGSA 252 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 252 (586)
...+...|++++|+..|++....-. .++ ..++..+..++...|+++.|...+.+..+.... ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777654311 122 234556666677777777777777766653211 12446677
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccC--CCCCCHHHHHHH
Q 007878 253 LVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRC--EAVPNYVTLVCV 321 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--g~~pd~~t~~~l 321 (586)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++...... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 78888888888888887776542 12 24677788888888999999988888765100 111235677888
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCC--C-ChHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIK--P-GAEHYACVVDLLGRAGL---VDRAYEIIKEMPMRPTI-SVWGALLNACR 394 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~~~~ 394 (586)
...+.+.|++++|...++...+...-. | ....+..+...|...|+ +++|+..+++....|+. ..+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 889999999999999999887643221 2 24456667777778888 88999999987544433 45667788899
Q ss_pred HcCCHHHHHHHHHHHhcc
Q 007878 395 VYGKPELGRIAADNLFKL 412 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~ 412 (586)
..|++++|...++++.+.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999888753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-09 Score=103.47 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=120.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC-------C--CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCC-CHHHHHHHHH
Q 007878 256 MYGKCGSIQDAEIAFNKMPE-------R--NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVP-NYVTLVCVLS 323 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~p-d~~t~~~ll~ 323 (586)
.|...|++++|...|++..+ + ...+|+.+...|...|++++|+..|++..+.. .|-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555544321 1 13456667777777777777777777665511 11000 1346777888
Q ss_pred Hhhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 007878 324 ACSRA-GAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP---TI-----SVWGAL 389 (586)
Q Consensus 324 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~l 389 (586)
.|... |++++|+..|++..+-..-..+ ..++..+...|.+.|++++|++.|++. ...| +. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999887653211111 356788888999999999999999886 2222 21 256777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCchh-----HHHHHHHHh--hcCChHHHHHHHHHHH
Q 007878 390 LNACRVYGKPELGRIAADNLFKLDPNDSGN-----HVLLSNMFA--ATGRWEEADLVRKEMK 444 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~ 444 (586)
..++...|++++|+..+++.++++|..... +..++..|. ..+++++|...++++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 788889999999999999999998875443 334555554 4567888888776543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-09 Score=101.73 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHhcccCcHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-
Q 007878 212 DFMISSVLSACARIAGLELGRSVHAVAVKA------CV-EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-------R- 276 (586)
Q Consensus 212 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~- 276 (586)
..++..+...+...|++++|...+..+++. +- .....++..+...|...|++++|.+.|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555566666666666666666665543 11 11344566666666667777666666655421 1
Q ss_pred ---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc---C-CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 277 ---NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR---C-EAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 277 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~-g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
...+|..+...|...|++++|+..|++..+.- . +-.|+ ..++..+...+...|++++|..+++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344444445555555555555555554410 0 00111 2334444444444555555555444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-09 Score=101.45 Aligned_cols=245 Identities=11% Similarity=-0.044 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--C-ChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007878 129 LGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC--N-EVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 129 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
+|.+++.+..+.- ++....+ . |.+. + ++++|...|++ ....|...|++++|++.|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666652 3222222 1 2232 2 47777777655 36677788888888888877654
Q ss_pred C----CCCCC-HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeH
Q 007878 206 E----GVEPK-DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVC 280 (586)
Q Consensus 206 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 280 (586)
. |-+++ ..+|..+..++...|++++|...+...++.. .+.|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH-----------HHH
Confidence 2 21111 2355555556666666666666555554321 112222221 234
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHhhhccCCCC-C-C-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-----
Q 007878 281 WNAIIGGYAHQ-GHADMALSSFEEMTSMRCEAV-P-N-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA----- 351 (586)
Q Consensus 281 ~~~li~~~~~~-g~~~~A~~~~~~m~~~~~g~~-p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----- 351 (586)
|+.+...|... |++++|+..|++..+...+.. + . ..++..+...+...|++++|+..|+...+...-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 55666677775 777777777777665211100 0 0 2456677777778888888888887776531111111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCC
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTIS------VWGALLNACR--VYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|+..++++..++|..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14566677777888888888888776 4444321 2334455553 3456777777777777777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-09 Score=112.21 Aligned_cols=156 Identities=9% Similarity=0.025 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007878 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 222 (586)
...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----------------- 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----------------- 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 44555555555555555555555554421 2344455555555555555555555555444
Q ss_pred hcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHH
Q 007878 223 ARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
..+. +...+..+..+|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++
T Consensus 72 ------------------l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 72 ------------------ISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp ------------------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3322 334444444445555555555554444332 233445555555555555555555
Q ss_pred HHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007878 300 SFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
.|++..+ +.|+ ...+..+..++...|++++|.+.++++
T Consensus 133 ~~~~Al~----l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 133 SYRTALK----LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHH----HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHH----hCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 5555554 2233 344555555555555555555555444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-08 Score=92.11 Aligned_cols=180 Identities=9% Similarity=0.010 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007878 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
+...+++.+..+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555544 33444455777788888888888888887633 244566677788888888888888888887
Q ss_pred hccCCCCC-----CHHHHHHHHHH--hhccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007878 306 SMRCEAVP-----NYVTLVCVLSA--CSRAG--AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 306 ~~~~g~~p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
+ ..| +..+...+..+ ....| ++++|..+|+++..+ .|+......+..++.+.|++++|.+.++.
T Consensus 164 ~----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 N----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred h----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 346 35566666655 33334 888888888888643 45533334444478888888888888876
Q ss_pred C-CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 377 M-PM----------RP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 377 m-~~----------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
+ .. .| |+.+...++......|+ +|.++++++.+..|+++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 5 21 13 45555456655556676 78889999999999887543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-08 Score=96.26 Aligned_cols=173 Identities=12% Similarity=0.005 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
...+-.+...+.+.|++++|...|+++.+ |+ ..++..+..+|.+.|++++|+..|++..+...+-+.....+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455556666666666666666543 22 3455556666666667777777666666521111011334455
Q ss_pred HHHHhhc--------cCCHHHHHHHHHHhHHhcCCCCChH---------------HHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 321 VLSACSR--------AGAVEKGMKIFYSMTLKYGIKPGAE---------------HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 321 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+..++.. .|++++|+..|+.+.+.+.-.+... .+..+...|.+.|++++|+..|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555 6677777777766665421111111 1245677888899999999998887
Q ss_pred -CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCchh
Q 007878 378 -PMRPT----ISVWGALLNACRVY----------GKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 378 -~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
...|+ ...+..+..++... |++++|+..++++++..|+++..
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 22233 45677777777755 88899999999999999987643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=7.6e-08 Score=90.63 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=135.6
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007878 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
|...|++..+ ++..++..+..++...|++++|++++.+.+. .+-.+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~--~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGID--NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 4555666788889999999999999999877 44212 4567788889999999999999999999
Q ss_pred HHhcCCCC-----ChHHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 342 TLKYGIKP-----GAEHYACVVDL--LGRAG--LVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 342 ~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
.+. .| +..+...|..+ ....| ++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 653 67 34555556655 33334 999999999999 4446644445566688999999999999998887
Q ss_pred c----------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 412 L----------DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 412 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
. +|+++.+...++......|+ +|.++++++++.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6 48888888788777777887 899999999874
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.3e-08 Score=91.36 Aligned_cols=167 Identities=12% Similarity=0.016 Sum_probs=134.9
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG- 350 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 350 (586)
.+...+-.+...+.+.|++++|+..|+++.+. .|+ ...+..+..++...|++++|+..|+...+.+.-.|.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 45566777888899999999999999999882 243 567888889999999999999999999876332333
Q ss_pred hHHHHHHHHHHHh--------cCChHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHHcCCHHHHH
Q 007878 351 AEHYACVVDLLGR--------AGLVDRAYEIIKEM-PMRPT-ISVW-----------------GALLNACRVYGKPELGR 403 (586)
Q Consensus 351 ~~~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~-~~~~-----------------~~ll~~~~~~~~~~~a~ 403 (586)
...+..+...+.. .|++++|+..|++. ...|+ ...+ ..+...+...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4567788888888 99999999999987 22232 2222 45577789999999999
Q ss_pred HHHHHHhccCCCCc---hhHHHHHHHHhhc----------CChHHHHHHHHHHHhC
Q 007878 404 IAADNLFKLDPNDS---GNHVLLSNMFAAT----------GRWEEADLVRKEMKDV 446 (586)
Q Consensus 404 ~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 446 (586)
..++++++..|+++ ..+..++.+|... |++++|...++++.+.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999998854 4788888989876 9999999999998874
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-08 Score=82.82 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=67.8
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCH
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P-MRPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~ 399 (586)
...+...|++++|..+|+.+.+. .+.+...+..+...+...|++++|.+.++++ . .+.+...|..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444322 0112333444444444444444444444443 1 112344555666666666777
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++|...++++.+..|.+...+..++.+|...|++++|...++++.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777677777777777777777777777777655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-09 Score=90.77 Aligned_cols=140 Identities=10% Similarity=0.015 Sum_probs=108.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHh
Q 007878 286 GGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGR 363 (586)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 363 (586)
..+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|+..|+...+. .| +...|..+...|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcc----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 334456778888888887765 2343 455667778888888888888888888753 44 47788888888889
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCchhHHHHHHHHhhcCC
Q 007878 364 AGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIA-ADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
.|++++|+..|++. .+.| +..+|..+...+...|+.++|... ++++++++|+++.+|.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999998888887 4445 567888888889999998776654 689999999999999998888887774
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-08 Score=89.45 Aligned_cols=180 Identities=9% Similarity=-0.006 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe----eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----H
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY----V 316 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~----~ 316 (586)
...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+. .|+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCCcHHH
Confidence 33445566677778888888888877653 332 35666777788888888888888887762 2332 1
Q ss_pred HHHHHHHHhhc------------------cCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 317 TLVCVLSACSR------------------AGAVEKGMKIFYSMTLKYGIKPGA-EHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 317 t~~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
.+..+..++.. .|+.++|...|+.+.+. .|+. ..+..+... +......
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~------ 146 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH------
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH------
Confidence 33334444433 35566666666666533 2331 111111100 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 378 PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS---GNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 378 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113455668889999999999999999999876 5688999999999999999999999887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-08 Score=80.67 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
+|..+...+...|++++|..+|+++.+ .. +.+...+..+...+...|++++|..+|+.+... .+.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 566777778888888888888888876 22 234667777777888888888888888887653 1334667777888
Q ss_pred HHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 360 LLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
.+...|++++|.+.++++ .. ..+..+|..+...+...|++++|...++++.+.+|.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888888876 22 235677888888888889999999998888887775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-08 Score=93.08 Aligned_cols=161 Identities=9% Similarity=-0.007 Sum_probs=121.1
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007878 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
+...+..+...+.+.|++++|...|++... ..| +...+..+...+...|++++|...++.+... .|+.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~ 188 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQG 188 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHH
Confidence 344555666677778888888888888877 224 4567777778888888888888888877543 55544333
Q ss_pred HH-HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhhc
Q 007878 356 CV-VDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND--SGNHVLLSNMFAAT 430 (586)
Q Consensus 356 ~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~ 430 (586)
.. ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+..++.+|...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22 23356667777788777776 3334 57788888999999999999999999999999987 78899999999999
Q ss_pred CChHHHHHHHHHHH
Q 007878 431 GRWEEADLVRKEMK 444 (586)
Q Consensus 431 g~~~~a~~~~~~m~ 444 (586)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999988887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=95.69 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC-------CC
Q 007878 179 SWCSMLVVYVQNYEEENGCQMFLTARRE------GVEP-KDFMISSVLSACARIAGLELGRSVHAVAVKAC-------VE 244 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~ 244 (586)
+|..+...|...|++++|+..|++.... +-.| ...++..+..++...|++++|...+..+.+.. ..
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4444555555555555555555554432 1112 12344555555566666666666665555421 11
Q ss_pred C-chhHHHHHHHHHHh------cCCHHHHHHHHhhCCCC---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 245 G-NIFVGSALVDMYGK------CGSIQDAEIAFNKMPER---NLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 245 ~-~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+ ....+..+...+.. ...+..+...++..... ...+|..+...|...|++++|..+|++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12222222222222 22244444555554432 234677788888889999999999888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=109.17 Aligned_cols=167 Identities=10% Similarity=-0.012 Sum_probs=131.8
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHh
Q 007878 258 GKCGSIQDAEIAFNKMP-----------ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSAC 325 (586)
Q Consensus 258 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~ 325 (586)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchHHHHHHHHHHH
Confidence 66788888888888765 245667888888888889999999999888872 24 467788888888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007878 326 SRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 402 (586)
...|++++|+..|+++.+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999888753 45 46778888888889999888 8888876 3344 567788888889999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007878 403 RIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
+..++++.+++|++..++..++.+|...|+
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999888888888888877665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-08 Score=84.23 Aligned_cols=156 Identities=10% Similarity=0.095 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-
Q 007878 283 AIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL- 360 (586)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~- 360 (586)
.+...+.+.|++++|+..|++..+ ..| +...+..+...+...|++++|+..|+.+... .|+...+..+...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 334445555555555555555544 112 2344555555555555555555555555432 2222222111111
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCChHHH
Q 007878 361 LGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND--SGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a 436 (586)
+...+...+|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11112222345555554 3334 46778888888889999999999999999988764 55888889999999999999
Q ss_pred HHHHHHHHh
Q 007878 437 DLVRKEMKD 445 (586)
Q Consensus 437 ~~~~~~m~~ 445 (586)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-07 Score=83.66 Aligned_cols=162 Identities=9% Similarity=-0.086 Sum_probs=117.8
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHhHHhcCCCCCh
Q 007878 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG----AVEKGMKIFYSMTLKYGIKPGA 351 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~ 351 (586)
.+..++..+...|...+++++|++.|++..+ .| +...+..+...|.. + ++++|..+|+...+. -+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~ 85 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSK 85 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCH
Confidence 4555666666666667777777777777766 43 45566666666666 5 778888888777542 245
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchh
Q 007878 352 EHYACVVDLLGR----AGLVDRAYEIIKEM-PMRPT---ISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 352 ~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
..+..|...|.. .+++++|+++|++. ...|+ ...+..|...|.. .++.++|...++++.+. |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 666677777766 77888888888877 33332 6777888888877 77899999999999888 556778
Q ss_pred HHHHHHHHhhc-C-----ChHHHHHHHHHHHhCCC
Q 007878 420 HVLLSNMFAAT-G-----RWEEADLVRKEMKDVGI 448 (586)
Q Consensus 420 ~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 448 (586)
+..|+.+|... | +.++|...+++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888888754 3 89999999999887664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=101.63 Aligned_cols=187 Identities=13% Similarity=0.027 Sum_probs=143.8
Q ss_pred hcccCcHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc
Q 007878 223 ARIAGLELGRSVHAVAV--------KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ 291 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 291 (586)
...|++++|.+.++++. +..+ .+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 4333 3567788888999999999999999998764 4667888899999999
Q ss_pred CCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHH
Q 007878 292 GHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 292 g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 369 (586)
|++++|++.|++..+ ..| +...+..+..++.+.|++++ +..|+.+.+. .| +...|..+..+|.+.|++++
T Consensus 481 g~~~~A~~~~~~al~----l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD----TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHH
Confidence 999999999999988 235 46788889999999999999 9999998754 45 46788899999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCch
Q 007878 370 AYEIIKEM-PMRPT-ISVWGALLNACRVYGK-----PELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 370 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 418 (586)
|++.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99999998 56676 4567777777655554 23344444444455444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=100.01 Aligned_cols=158 Identities=10% Similarity=0.037 Sum_probs=123.9
Q ss_pred cCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHH
Q 007878 260 CGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGM 335 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~ 335 (586)
.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+ . .| +...+..+..++...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--L--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--T--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4789999999998875 4567899999999999999999999999988 2 35 4778889999999999999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 007878 336 KIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY---GKPELGRIAADNL 409 (586)
Q Consensus 336 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~ 409 (586)
..|++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++
T Consensus 78 ~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999764 44 4778999999999999999999999987 3334 577888999999999 9999999999999
Q ss_pred hccCCCCchhHHHHH
Q 007878 410 FKLDPNDSGNHVLLS 424 (586)
Q Consensus 410 ~~~~p~~~~~~~~l~ 424 (586)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999888887776
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-07 Score=89.22 Aligned_cols=221 Identities=13% Similarity=0.032 Sum_probs=153.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007878 189 QNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR-IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
..|++++|.+++++..+.. +.. +.+ .++++.|...+..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577889999988876532 111 111 46677776666544 45677788888888
Q ss_pred HHHhhCCC-----CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCCC--HHHHHHHHHHhhccCCHHHH
Q 007878 268 IAFNKMPE-----RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVPN--YVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 268 ~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~pd--~~t~~~ll~a~~~~g~~~~a 334 (586)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.. .| .|. ..++..+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 88776543 11 3477888888999999999999998876521 12 122 3577788888988 999999
Q ss_pred HHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHH
Q 007878 335 MKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT----ISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 335 ~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~a 402 (586)
+..|++...-+.-..+ ..++..+...|.+.|++++|++.|++. .+ .++ ...+..+...+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988753211111 467888899999999999999999887 11 122 23566666777888999999
Q ss_pred HHHHHHHhccCCCCchh-----HHHHHHHHhhcCChHHHHHH
Q 007878 403 RIAADNLFKLDPNDSGN-----HVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 439 (586)
...+++.+ +.|..... ...++..+ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 88865432 33445544 56776666553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.73 E-value=9e-06 Score=83.39 Aligned_cols=122 Identities=13% Similarity=-0.012 Sum_probs=60.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-LVDRAYEIIKEM--PMRPTISVWGALLNAC 393 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 393 (586)
.|...+..+.+.+.++.|..+|+.+ +.. ..+...|......-.+.+ +.+.|..+|+.. ...-+...|...+.-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444444444455566666666655 211 122333332222222222 466666666554 1111233344445545
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
...|+.+.|..+++++. .....+...+..-...|+.+.+.++++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666666666666652 2334455555545556777777776666653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-08 Score=82.56 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=101.4
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG 397 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 397 (586)
|...+...|++++|+..++... ...|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677899999999998875 33454 445667889999999999999999997 4445 6788999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH-HHHHHh
Q 007878 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV-RKEMKD 445 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 445 (586)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=84.99 Aligned_cols=127 Identities=11% Similarity=0.036 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007878 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVD 359 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 359 (586)
+.+...|.+.|++++|+..|++..+ +.| +...+..+..++...|++++|+..|+.+.+. .|+ ...+..+..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~ 130 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ----KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGN 130 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH
Confidence 3377788888999999999998887 235 4677888888889999999999999888754 454 677778877
Q ss_pred HHHhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 360 LLGRAGL--VDRAYEIIKEMPMRPTI--SVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 360 ~~~~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
.|...|. .+.+...++... .|+. ..+..+..++...|++++|+..+++++++.|++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7766553 345566666552 3333 344555566777889999999999999999863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=83.16 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhh
Q 007878 251 SALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACS 326 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~ 326 (586)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+ +.|+ ..++..+..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ----LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHH
Confidence 3456666667777777776666542 3455666666667777777777777777766 2243 455666666555
Q ss_pred ccCC--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 007878 327 RAGA--VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALL 390 (586)
Q Consensus 327 ~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 390 (586)
..|. .+.+...++... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4443 233444444332 11222223333444555567777777777765 5566655544443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=98.47 Aligned_cols=145 Identities=13% Similarity=0.003 Sum_probs=99.9
Q ss_pred ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHH
Q 007878 225 IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSF 301 (586)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 301 (586)
.|++++|...++++.+..+. +...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46778888888888776544 567788888888888888888888887654 35667888888888888888888888
Q ss_pred HHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc---CChHHHHHHHHh
Q 007878 302 EEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRA---GLVDRAYEIIKE 376 (586)
Q Consensus 302 ~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~ 376 (586)
++..+ . .| +...+..+..++...|++++|.+.|++..+. .| +...+..+...+... |+.++|.+.+++
T Consensus 81 ~~al~--~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 81 QQASD--A--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHH--H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHh--c--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 88887 2 24 4677888888888888888888888888754 34 467778888888888 888888888887
Q ss_pred C
Q 007878 377 M 377 (586)
Q Consensus 377 m 377 (586)
.
T Consensus 154 a 154 (568)
T 2vsy_A 154 A 154 (568)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-07 Score=85.64 Aligned_cols=161 Identities=9% Similarity=0.049 Sum_probs=105.3
Q ss_pred CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHH-HHH
Q 007878 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAI-IGG 287 (586)
Q Consensus 211 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l-i~~ 287 (586)
+...+..+...+...|++++|...++++++..+. +...+..+...|.+.|++++|...|+++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3344555566667777777777777777776654 566777778888888888888888888764 433322222 223
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007878 288 YAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
+.+.++.++|+..|++... . .| +...+..+..++...|++++|+..|..+.+...-..+...+..++..|...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~--~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVA--E--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHh--c--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 5566677777777777776 2 24 45667777777777888888888887776541111125566677777777777
Q ss_pred hHHHHHHHHh
Q 007878 367 VDRAYEIIKE 376 (586)
Q Consensus 367 ~~~A~~~~~~ 376 (586)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7776666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-06 Score=82.40 Aligned_cols=161 Identities=7% Similarity=-0.073 Sum_probs=116.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHH
Q 007878 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV----TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYA 355 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 355 (586)
.+..+...|++++|..++++..+. ....|+.. .+..+...+...|++++|+..|+.+.....-.++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 356677888888888888887762 12223321 2334666677778888888888888753111223 33678
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhH
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEMP-------MR-PT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNH 420 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m~-------~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 420 (586)
.+...|...|++++|+..++++- .. +. ..++..+...|...|++++|...+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888899888888887761 11 11 2477888889999999999999999998864322 5678
Q ss_pred HHHHHHHhhcCC-hHHHHHHHHHHHh
Q 007878 421 VLLSNMFAATGR-WEEADLVRKEMKD 445 (586)
Q Consensus 421 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 445 (586)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-07 Score=80.16 Aligned_cols=154 Identities=9% Similarity=-0.020 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH-h
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA-C 325 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a-~ 325 (586)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+...+...... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCChHHHHHHHHHHH
Confidence 33456667778888888888888764 4556777788888888888888888888766 22433322221111 1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHH
Q 007878 326 SRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT---ISVWGALLNACRVYGKPE 400 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~~~~~ 400 (586)
...+...+|...++...+. .|+ ...+..+...|...|++++|...|+++ ...|+ ...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1222233467777777643 454 677788888888888888888888876 44443 557888888888888888
Q ss_pred HHHHHHHHHh
Q 007878 401 LGRIAADNLF 410 (586)
Q Consensus 401 ~a~~~~~~~~ 410 (586)
+|...+++.+
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 8888887765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-07 Score=79.80 Aligned_cols=101 Identities=9% Similarity=-0.078 Sum_probs=87.9
Q ss_pred CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007878 346 GIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 346 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 556777788888999999999999887 3444 67889999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 007878 423 LSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++.+|...|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-06 Score=79.37 Aligned_cols=210 Identities=11% Similarity=0.044 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CCeeHHHHHHHHH----Hhc---CCHHHH
Q 007878 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCG--SIQDAEIAFNKMPE---RNLVCWNAIIGGY----AHQ---GHADMA 297 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~----~~~---g~~~~A 297 (586)
+|..+...++..++. +..+++.--..+...| +++++++.++.+.. .+..+|+.--..+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 334444444443332 2333333333444444 45555555544432 2334444433333 223 455566
Q ss_pred HHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC------hHH
Q 007878 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE--KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL------VDR 369 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 369 (586)
+++++++.+. . +-|...|..-...+.+.|.++ +++++++.+.+.. .-|...|+.-...+.+.|+ +++
T Consensus 130 L~~~~~~l~~--~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 130 FDILEAMLSS--D-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHh--C-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666551 1 113444444444444455555 6666666665431 2234444444444444444 666
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007878 370 AYEIIKEM-PMR-PTISVWGALLNACRVYGKPEL-GRIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 370 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+++.++++ ... -|...|+-+...+.+.|+... ...+++++.+++ |.++.+...++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666655 222 356667666666666665333 445666666655 666677777777777777777777777776
Q ss_pred Hh
Q 007878 444 KD 445 (586)
Q Consensus 444 ~~ 445 (586)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5.6e-07 Score=82.22 Aligned_cols=183 Identities=14% Similarity=0.003 Sum_probs=130.5
Q ss_pred HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee----HHHH
Q 007878 212 DFMISSVLSACARIAGLELGRSVHAVAVKACVEGN--IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLV----CWNA 283 (586)
Q Consensus 212 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~----~~~~ 283 (586)
...+..+...+.+.|++++|...+..+++..+... ...+..+..+|.+.|++++|...|++..+ |+.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455666778899999999999999998765422 35677889999999999999999999764 4332 4555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHhhhccCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007878 284 IIGGYAH------------------QGHADMALSSFEEMTSMRCEAVPNYV-TLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 284 li~~~~~------------------~g~~~~A~~~~~~m~~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
+..++.. .|+.++|+..|+++.+ ..|+.. ..... .....+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~P~~~~a~~a~--------------~~l~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR----GYPNSQYTTDAT--------------KRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT----TCTTCTTHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH----HCcCChhHHHHH--------------HHHHHHHHH
Confidence 5666654 5789999999999988 236532 22111 111111100
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007878 345 YGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.......+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|...++.+....|++.
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112234667788999999999999887 33343 24688888899999999999999999988888754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-07 Score=80.97 Aligned_cols=126 Identities=8% Similarity=-0.048 Sum_probs=104.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACR 394 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~ 394 (586)
.+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|++.+++. ... .+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3445566777888888888888766 3567788888888888888998888888876 222 35678888889999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCc----------------hhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 395 VYGKPELGRIAADNLFKLDPNDS----------------GNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..|++++|+..++++.+..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999888777 889999999999999999999999988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=79.35 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=85.4
Q ss_pred CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007878 346 GIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 346 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 33443 556677788888899999999988886 3334 67788888899999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 007878 423 LSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=79.44 Aligned_cols=172 Identities=10% Similarity=-0.116 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeHHHHHHHHHHhcC----CHHHHHHHHHHhh
Q 007878 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-RNLVCWNAIIGGYAHQG----HADMALSSFEEMT 305 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 305 (586)
|.+.+....+.| +...+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555543 455566666666666777777777766543 345556666666665 5 6777888877776
Q ss_pred hccCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHh----cCChHHHHHHH
Q 007878 306 SMRCEAVPNYVTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPG---AEHYACVVDLLGR----AGLVDRAYEII 374 (586)
Q Consensus 306 ~~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~ 374 (586)
+ .+ +...+..+...|.. .+++++|+.+|+...+ ..|+ ...+..|..+|.. .+++++|+..|
T Consensus 81 ~--~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 81 E--AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp H--TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred H--CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6 43 55666666666666 6788888888877753 2342 5677777777777 67788888888
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 007878 375 KEM-PMRPTISVWGALLNACRVY-G-----KPELGRIAADNLFKLDP 414 (586)
Q Consensus 375 ~~m-~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~p 414 (586)
++. ...++...+..|...|... | +.++|...++++.+.+.
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 876 2224555666666666543 2 78888888888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-07 Score=74.91 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=76.3
Q ss_pred CCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007878 311 AVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 311 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
+.|+ ...+......|.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344 345666667777777777777777776643 1224566677777777777777777777765 3333 456777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007878 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
.+..++...|++++|+..++++++++|++..++..|.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777788888888888888888877776666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=75.33 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007878 347 IKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 347 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4565 467778889999999999999999987 3444 678899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 007878 424 SNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=4.6e-06 Score=85.59 Aligned_cols=358 Identities=11% Similarity=-0.004 Sum_probs=210.3
Q ss_pred CC-CchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHHHcCCC-hhHHHHH
Q 007878 23 LH-IPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNAVLGGR-PKNAIDA 98 (586)
Q Consensus 23 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 98 (586)
.| ++..|+.+++.++..- |. |+++.+..+|+.... |++..|..-+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777888888877642 22 889999999998765 888889888876666553 3556677
Q ss_pred HHHHHH-CCCCC-ChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-------------
Q 007878 99 FINLRR-TGGEP-DLITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC------------- 159 (586)
Q Consensus 99 ~~~m~~-~g~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~------------- 159 (586)
|+.... .|..| +...|...+.-+.. .++++.+..+|+.+++.....-...|......-...
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 887755 35444 44556666655432 356788999999998743221122333322211111
Q ss_pred CChHHHHHHHhcCC----CCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCc
Q 007878 160 NEVGLAKVVFDGII----DKNDVSWCSMLVVYVQNYE-------EENGCQMFLTARREGVEPKDFMISSVLSACARIAGL 228 (586)
Q Consensus 160 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 228 (586)
+.+..|..+++.+. ..+...|...+.--..++. .+.+..+|+++.... +.+...|...+.-+.+.|+.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 12223333333321 1233456554443222211 234667888877643 44566676667777788889
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC--C----------CCeeHHHHHHHHHHhcCCHH
Q 007878 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA-EIAFNKMP--E----------RNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~--~----------~~~~~~~~li~~~~~~g~~~ 295 (586)
+.|..++++.+.. +. +...+. .|+...+.++. ..+.+... + .....|...+..+.+.+..+
T Consensus 230 ~~ar~i~erAi~~-P~-~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 230 EKAKKVVERGIEM-SD-GMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HHHHHHHHHHHHH-CC-SSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhC-CC-cHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 9999999988888 32 333332 23322111111 12222211 0 11245666666666777888
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhh-ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007878 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACS-RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
.|..+|++. .. .+ ++...|......-. ..++.+.|..+|+...+.++- +...+...++...+.|+.+.|..+|
T Consensus 304 ~AR~i~~~A-~~-~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 304 LFRKLFIEL-GN-EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHHHHHHH-TT-SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHh-hC-CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888 41 22 23334432221111 233688899999888876432 2445666788888889999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 375 KEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 375 ~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 378 er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9883 2567788888777778888888887777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-05 Score=75.35 Aligned_cols=228 Identities=9% Similarity=-0.050 Sum_probs=165.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccc--CcHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 007878 190 NYEEENGCQMFLTARREGVEPKDF-MISSVLSACARIA--GLELGRSVHAVAVKACVEGNIFVGSALVDMY----GKC-- 260 (586)
Q Consensus 190 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 260 (586)
....++|++++.++... .|+.. .++.--.++...+ +++++...+..++...++ +..+++.--..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 33446788888777763 45444 3455555556666 788888888888877665 455555444444 444
Q ss_pred -CCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH--HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC----
Q 007878 261 -GSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD--MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA---- 330 (586)
Q Consensus 261 -g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~---- 330 (586)
++++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+ .. .-|...|+.-...+.+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHhccccchh
Confidence 788899988888764 67788888887888888888 99999999998 33 2256677666666666666
Q ss_pred --HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHH
Q 007878 331 --VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR-AYEIIKEM-PM----RPTISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 331 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~a 402 (586)
++++++.++.+... -+-|...|+-+-..+.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999988754 23457888888888888888554 55576665 22 24778899999999999999999
Q ss_pred HHHHHHHhc-cCCCCchhHHHHHH
Q 007878 403 RIAADNLFK-LDPNDSGNHVLLSN 425 (586)
Q Consensus 403 ~~~~~~~~~-~~p~~~~~~~~l~~ 425 (586)
.++++.+.+ .+|-....+...++
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 999999997 79987777665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-06 Score=77.53 Aligned_cols=145 Identities=8% Similarity=-0.087 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG 329 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g 329 (586)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++... .. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-ccchHHHHHHHHHHHHcc
Confidence 334555666777777777777777666666777777777777777777777777666 21 123556666666666677
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007878 330 AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRP-TISVWGALLNACRVYGKPELGRIAADN 408 (586)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 408 (586)
++++|+..|+...+. .|+..... +...| +...| ....|..+..++...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777766666542 11100000 00000 01222 235677777788888888888888888
Q ss_pred HhccCCCC
Q 007878 409 LFKLDPND 416 (586)
Q Consensus 409 ~~~~~p~~ 416 (586)
+.+..|.+
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 88888875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=75.02 Aligned_cols=128 Identities=13% Similarity=0.033 Sum_probs=97.6
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 393 (586)
..+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777778888888888777653 1234667777778888888888888888776 222 3567888888889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHH--HHhhcCChHHHHHHHHHHHh
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSN--MFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 445 (586)
...|++++|...++++.+..|.+...+..+.. .+...|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998877754444 47788999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=71.10 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 007878 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNA 392 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 392 (586)
...+..+...+...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666667777777777777777777653 1234566777777777888888888777776 22 2356778888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007878 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999989988888888877766543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=83.12 Aligned_cols=164 Identities=7% Similarity=-0.056 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHhcC--CCCC--hH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY----VTLVCVLSACSRAGAVEKGMKIFYSMTLKYG--IKPG--AE 352 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 352 (586)
+...+..+...|++++|.+.+.+..+... ..++. ..+..+...+...|++++|+..++....... ..+. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34455666777788888887777665211 11111 1233445556677788888888877653211 1111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------Cc
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM----PMRPT-----ISVWGALLNACRVYGKPELGRIAADNLFKLDPN------DS 417 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 417 (586)
.|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777888888888888888888765 11122 257788888899999999999999988876422 14
Q ss_pred hhHHHHHHHHhhcCChHHH-HHHHHHHHh
Q 007878 418 GNHVLLSNMFAATGRWEEA-DLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 445 (586)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=72.26 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556667778888888888888876 3333 67788888888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007878 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=71.44 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLN 391 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~ 391 (586)
+...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|++.+++. ... .+...|..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456666667777777777777777776532 1224566677777777777777777777765 222 35677888888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007878 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
.+...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888999999999999998888888888888888776653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-07 Score=86.79 Aligned_cols=199 Identities=8% Similarity=-0.029 Sum_probs=149.3
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007878 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
..|++++|.+++.+..+.... . .+...|++++|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899999888765332 1 11115889999888776 35678889999999999998
Q ss_pred hhhcc--CCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCC--CCC--hHHHHHHHHHHHhcCChHHHHHHHHh
Q 007878 304 MTSMR--CEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI--KPG--AEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 304 m~~~~--~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
..+.. .+-.+. ..+|..+...|...|++++|+..|+....-+.- .|. ..++..+...|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 87621 111111 357888899999999999999999887653211 111 4577888899988 999999999988
Q ss_pred C-CCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHHHH
Q 007878 377 M-PMR---PT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS------GNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 377 m-~~~---p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
. .+. .+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 45788888999999999999999999999765432 2566777788888999999999999
Q ss_pred HH
Q 007878 443 MK 444 (586)
Q Consensus 443 m~ 444 (586)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=88.82 Aligned_cols=190 Identities=7% Similarity=-0.053 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVL 322 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll 322 (586)
...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+ +.| +...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 34555566667777777777777766542 3556677777777777777777777777766 224 356667777
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGA-EHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~ 401 (586)
.++...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 7777777777777777776543 2211 011111111111111111111 2222223333333333 333 2688899
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhC
Q 007878 402 GRIAADNLFKLDPNDSGNHVLLSNMFAAT-GRWEEADLVRKEMKDV 446 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 446 (586)
|...++++.+++|++......+...+.+. +++++|.++|.+..+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998877777777777766 7789999999988653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=85.58 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----------------hHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----------------AEHYACVVDLLGRAGLVDRAYEIIKEM-P 378 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 378 (586)
..+..+...+.+.|++++|+..|+..... .|+ ...|..+..+|.+.|++++|++.+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 222 467888888899999999999998887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHHh
Q 007878 379 MRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA-DLVRKEMKD 445 (586)
Q Consensus 379 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 445 (586)
..| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++| ...++.|..
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 6788999999999999999999999999999999999999999999999999998 456666643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=70.79 Aligned_cols=118 Identities=11% Similarity=-0.002 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLN 391 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 391 (586)
+...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3456666777777888888888888877653 1234667777788888888888888888776 2233 4677888888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007878 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.+...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999888888888888887765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.5e-07 Score=82.75 Aligned_cols=135 Identities=13% Similarity=-0.026 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 007878 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVD 359 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~ 359 (586)
-.....+...|++++|.++|..+.. .+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHH
Confidence 3455667777888888888877765 22 55444445555777888888888888755321 1 111 235667777
Q ss_pred HHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007878 360 LLGRAGLVDRAYEIIKEM---PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
++.+.|++++|++.|++. +..|. ...+.....++.+.|+.++|...|+++...+|. ......|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 888888888888888877 22143 336667777788888888898888888888887 5544444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-05 Score=74.57 Aligned_cols=159 Identities=7% Similarity=-0.067 Sum_probs=118.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-----C----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHH
Q 007878 253 LVDMYGKCGSIQDAEIAFNKMPER-----N----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLV 319 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~ 319 (586)
.+..+...|++++|.+.+++..+. + ...+..+...+...|++++|+..|++....... .++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 467788899999999999886541 1 112334566667778999999999999872111 123 23688
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhc----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHH
Q 007878 320 CVLSACSRAGAVEKGMKIFYSMTLKY----GIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPT-ISVW 386 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~ 386 (586)
.+...|...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++. ...+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999887422 11222 347888999999999999999998876 11222 5788
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhcc
Q 007878 387 GALLNACRVYGK-PELGRIAADNLFKL 412 (586)
Q Consensus 387 ~~ll~~~~~~~~-~~~a~~~~~~~~~~ 412 (586)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999995 69999999988764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-06 Score=78.03 Aligned_cols=181 Identities=8% Similarity=-0.094 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHHhhCCC---CCeeHHHHH-------HHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-------------
Q 007878 259 KCGSIQDAEIAFNKMPE---RNLVCWNAI-------IGGYAHQGHADMALSSFEEMTSMRCEAVPNY------------- 315 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~------------- 315 (586)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~----l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ----ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT----CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc----CChhhhhhhhccCCcccc
Confidence 46788888888887764 344677777 4555555566666666665544 33322
Q ss_pred ---------HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH---
Q 007878 316 ---------VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTI--- 383 (586)
Q Consensus 316 ---------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~--- 383 (586)
.....+...+...|++++|.+.|..+.. ..|+......+...+.+.+++++|+..|+.....|+.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 1223456678889999999999998863 3565446666777899999999999999977433433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 384 -SVWGALLNACRVYGKPELGRIAADNLFKLD--PN-DSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 384 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 467888889999999999999999998543 44 4457788899999999999999999999874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.8e-06 Score=77.91 Aligned_cols=165 Identities=7% Similarity=-0.083 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe-------eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC-CCCC--H
Q 007878 248 FVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL-------VCWNAIIGGYAHQGHADMALSSFEEMTSMRCE-AVPN--Y 315 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g-~~pd--~ 315 (586)
..+...+..+...|++++|.+.+++..+ +.. ..+..+...+...|++++|+..+++..+.... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778889999999888875432 111 22334555677788999999999988752111 1111 3
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------C
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-------T 382 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------~ 382 (586)
.+++.+...|...|++++|...|+.+.+.....|+ ..++..+...|.+.|++++|++.+++. ...+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999988732211222 257888899999999999999999876 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 007878 383 ISVWGALLNACRVYGKPELG-RIAADNLFKL 412 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 412 (586)
..+|..+...+...|++++| ...++++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888999999999999 7778887653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.2e-07 Score=77.21 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=86.7
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--H
Q 007878 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNA-CRVYGKP--E 400 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~~--~ 400 (586)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45667777777777765431 234567777777788888888888877776 2222 56667777777 6678887 8
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+|...++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888898999999999988888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=69.64 Aligned_cols=96 Identities=13% Similarity=-0.056 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566667777778888888877776 2233 56778888888888899999999999999999988888899999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007878 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999998888763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=67.18 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CchhHHHHHHH
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPN--DSGNHVLLSNM 426 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 426 (586)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555666666677777777776665 222 35667777888888888888888888888888888 88888888888
Q ss_pred Hhhc-CChHHHHHHHHHHHhCC
Q 007878 427 FAAT-GRWEEADLVRKEMKDVG 447 (586)
Q Consensus 427 ~~~~-g~~~~a~~~~~~m~~~g 447 (586)
|... |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 89999998888887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-05 Score=72.03 Aligned_cols=153 Identities=11% Similarity=0.012 Sum_probs=84.9
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcC
Q 007878 290 HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKP-GAEHYACVVDLLGRAG 365 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g 365 (586)
..|++++|.++++.... .......++..+...+...|++++|...+++..... +..| ....+..+...|...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333322 101123445555555555666666665555544311 1111 1344555666666666
Q ss_pred ChHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCC----chhHHHHHHHHhhc
Q 007878 366 LVDRAYEIIKEM-PM---RP-T----ISVWGALLNACRVYGKPELGRIAADNLFKLD--PND----SGNHVLLSNMFAAT 430 (586)
Q Consensus 366 ~~~~A~~~~~~m-~~---~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~ 430 (586)
++++|.+.+++. .. .+ + ..++..+...+...|++++|...+++..+.. ..+ ..++..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 666666666554 10 12 2 2345666667777788888887777777542 111 22356778888888
Q ss_pred CChHHHHHHHHHHHh
Q 007878 431 GRWEEADLVRKEMKD 445 (586)
Q Consensus 431 g~~~~a~~~~~~m~~ 445 (586)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888887765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=6e-06 Score=68.27 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 349 PGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34666777777777777777777777765 2223 567788888888889999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHhC
Q 007878 427 FAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 427 ~~~~g~~~~a~~~~~~m~~~ 446 (586)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=64.29 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 393 (586)
..+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555566666666666655432 1223455555555666666666666666554 2222 455666666667
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
...|++++|...++++.+.+|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777766655555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-06 Score=85.87 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=93.5
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
...+.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566778888888888888754 44 3778888888888899999998888887 3444 57788899999999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHH--HhhcCChHHHHHHHHH
Q 007878 399 PELGRIAADNLFKLDPNDSGNHVLLSNM--FAATGRWEEADLVRKE 442 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 442 (586)
+++|+..+++++++.|++...+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999998888887 8888999999999884
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-06 Score=66.49 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 222 367889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007878 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=3e-06 Score=68.70 Aligned_cols=93 Identities=16% Similarity=0.024 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445566777888888888888877 3334 67788888888999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 007878 432 RWEEADLVRKEMKDV 446 (586)
Q Consensus 432 ~~~~a~~~~~~m~~~ 446 (586)
++++|...+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00026 Score=67.92 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=105.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-
Q 007878 186 VYVQNYEEENGCQMFLTARREGVEPKDF-MISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC-G- 261 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 261 (586)
...+.+..++|++++.++... .|+.. .++.--.++...+ .++++..++..++...++ +..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 334455566788888888764 35433 3454444555556 477778888777777665 566666665556555 5
Q ss_pred CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH--------HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC
Q 007878 262 SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD--------MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA 330 (586)
Q Consensus 262 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~ 330 (586)
+++++.++++.+.+ +|..+|+.-.-.+.+.|..+ ++++.++++.+ .. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHTTSTT
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHhccc
Confidence 67777777777765 45566666555555545454 77777777776 22 1255666666666666554
Q ss_pred -------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007878 331 -------VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 331 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
++++++.++.+... -+-|...|+-+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56677777666543 12235555555555555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=71.73 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
.+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444443 1112 3444555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 007878 431 GRWEEADLVRKEMKD 445 (586)
Q Consensus 431 g~~~~a~~~~~~m~~ 445 (586)
|++++|.+.+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.6e-06 Score=69.91 Aligned_cols=103 Identities=5% Similarity=-0.024 Sum_probs=75.2
Q ss_pred CCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 007878 311 AVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVW 386 (586)
Q Consensus 311 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 386 (586)
+.|+ ...+..+...+.+.|++++|+..|+.+... .| +...|..+..+|.+.|++++|++.|++. .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3344 345666677777788888888888777643 44 4667777778888888888888888776 3333 45677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 387 GALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
..+..++...|++++|+..|++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 788888888888888888888888888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-06 Score=73.75 Aligned_cols=169 Identities=10% Similarity=-0.010 Sum_probs=97.5
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHH
Q 007878 256 MYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE 332 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~ 332 (586)
.....|++++|.+.|+.-.+ .....|..+...+...|++++|+..|++.... .|+...+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~----------- 77 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQ----------- 77 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCH-----------
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----Hhcccccchh-----------
Confidence 34445555665555554322 23345555666666667777777777666661 1221100000
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007878 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
....-.. ......|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|+..+++++
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000000 001356677777888888888888888776 223 357788888899999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCChHHHH-HHHHHHHhCC
Q 007878 411 KLDPNDSGNHVLLSNMFAATGRWEEAD-LVRKEMKDVG 447 (586)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 447 (586)
+++|.+...+..+..++...|+.+++. ..+..|...|
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988888877776 5556555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-06 Score=75.55 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007878 178 VSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
..++.+...+...|++++|+..|++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 344444555555555555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-05 Score=66.61 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345555666666666777777777766652 3454 456666667777777777777777665 2223 566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
.+..++...|++++|...+++++++.|++...+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777888888888888888888888887776666655543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-06 Score=70.73 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=84.2
Q ss_pred CCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007878 312 VPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 312 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
.|+ ...+..+...+...|++++|+..|+..... .| +...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 353 456667777888889999999998888753 34 5677788888888999999999988887 3333 567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
.+..++...|++++|+..+++++++.|+++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888899999999999999999999998876554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=8.6e-06 Score=64.91 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007878 350 GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567778889999999999999999987 3333 6788899999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 007878 428 AATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 428 ~~~g~~~~a~~~~~~m~~~ 446 (586)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.9e-06 Score=66.88 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=89.5
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007878 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
+.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++.+..|.+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344778888999999999999999999997 4444 67889999999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHhC
Q 007878 426 MFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 426 ~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=67.37 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007878 349 PGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
.+...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++.+..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35778888999999999999999999997 66677 67888899999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 007878 424 SNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.+|...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-06 Score=71.35 Aligned_cols=127 Identities=10% Similarity=0.064 Sum_probs=98.6
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCh
Q 007878 289 AHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL-LGRAGLV 367 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~ 367 (586)
...|++++|+..+++..+ .. +.+...+..+...|...|++++|...|+.+.+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--AN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHH--HC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHH--hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence 456788899999988877 22 2356788888899999999999999999887542 2356777788888 7788998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 368 --DRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 368 --~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 3334 567888888999999999999999999999999876544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=75.91 Aligned_cols=189 Identities=10% Similarity=-0.089 Sum_probs=113.1
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHH
Q 007878 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYA 289 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 289 (586)
..+..+...+...|++++|...+..+++..+. +...+..+...|.+.|++++|...+++..+ .+...|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34445555556666666666666666665443 566777788888888888888888887654 35567788888888
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007878 290 HQGHADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
..|++++|+..|++..+. .|+. ..+...+....+ ..++.... ..... ...++......+...+ .|+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL----AKEQRLNFGDDIPSALR---IAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH----HHHTTCCCCSHHHHHHH---HHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHH---HHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 889999999888887762 1321 111111111111 11111111 12121 3444555544443332 68889
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHH-HHHHc-CCHHHHHHHHHHHhccC
Q 007878 369 RAYEIIKEM-PMRPTISVWGALLN-ACRVY-GKPELGRIAADNLFKLD 413 (586)
Q Consensus 369 ~A~~~~~~m-~~~p~~~~~~~ll~-~~~~~-~~~~~a~~~~~~~~~~~ 413 (586)
+|++.+++. ...|+......-+. .+... +.+++|..+|.++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 998888776 56676544333333 34443 66788899998887743
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00011 Score=70.54 Aligned_cols=213 Identities=12% Similarity=0.044 Sum_probs=155.1
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc-C-CHHHHHHH
Q 007878 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG-SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ-G-HADMALSS 300 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-g-~~~~A~~~ 300 (586)
..++|.++...++..++. +..+++.--..+...| .+++++++++.+.. .+..+|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 446788999999998876 6777887777777888 59999999998864 5667888877777776 7 89999999
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHhhccCCHH--------HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC------
Q 007878 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE--------KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL------ 366 (586)
Q Consensus 301 ~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 366 (586)
++++.+ .. +-|...|+.-...+.+.|.++ ++++.++.+.+.. .-|...|+.....+.+.++
T Consensus 148 ~~k~L~--~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 148 IHGSLL--PD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHTS--SC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHH--hC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchH
Confidence 999988 32 225666665555555555555 8999999988651 3357778877788888776
Q ss_pred -hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 007878 367 -VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKP--------------------ELGRIAADNLFKLD------PNDS 417 (586)
Q Consensus 367 -~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~ 417 (586)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68899998877 3333 788898877777776654 22223333333322 4567
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+...|+.+|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7888999999999999999999999864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=68.91 Aligned_cols=125 Identities=10% Similarity=-0.090 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
|..+...+...|++++|...|++..+ .. +.+...+..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE--LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 33444444455555555555555444 11 113444444555555555555555555554432 11224445555555
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 007878 361 LGRAGLVDRAYEIIKEM-PMRP-TISVWG--ALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
+.+.|++++|.+.+++. ...| +...+. .+...+...|++++|...+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 55555555555555544 1112 222332 22222444555666655555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=65.06 Aligned_cols=109 Identities=10% Similarity=-0.044 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 393 (586)
..+..+...+.+.|++++|+..|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555666666777777766666543 1223566666677777777777777777665 2233 466777777778
Q ss_pred HHcCCHHHHHHHHHHHhccC------CCCchhHHHHHHH
Q 007878 394 RVYGKPELGRIAADNLFKLD------PNDSGNHVLLSNM 426 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 426 (586)
...|++++|...++++++++ |.+......+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 88888888888888888887 6666555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0002 Score=68.35 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCC-HHHHHHHH
Q 007878 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG--SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGH-ADMALSSF 301 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 301 (586)
++++..++..++...++ +..+++.-.-.+.+.| .++++..+++.+.+ .|..+|+.-.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45666666666666555 5566665555566666 36777777777653 566677766666666676 47777777
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHhhcc--------------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc--
Q 007878 302 EEMTSMRCEAVPNYVTLVCVLSACSRA--------------GAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRA-- 364 (586)
Q Consensus 302 ~~m~~~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-- 364 (586)
.++.+ .. +-|...|+.....+.+. +.++++++.+...... .| |...|+-+-..+.+.
T Consensus 169 ~~~I~--~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 169 DSLIT--RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHH--HC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSC
T ss_pred HHHHH--HC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccC
Confidence 77776 22 12455555444333332 3466777777766543 33 355555444444443
Q ss_pred ---------CChHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007878 365 ---------GLVDRAYEIIKEM-PMRPTISVWGALLNAC-----RVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 365 ---------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
+.++++++.++++ ...||. .|..+-.++ ...+..++....+.++.+++|...+.|.-+..
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3456666666665 334443 333222221 12455566666777777777765555554433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=67.52 Aligned_cols=106 Identities=13% Similarity=0.017 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007878 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLN 391 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 391 (586)
...+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345556667778888888888888887653 34 4667778888888888888888888876 2333 4567788888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007878 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
++...|++++|...+++++++.|+++......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999999999988877665443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-05 Score=64.51 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007878 350 GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
+...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 333 36788899999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 007878 428 AATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 428 ~~~g~~~~a~~~~~~m~~~ 446 (586)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.9e-06 Score=67.15 Aligned_cols=93 Identities=8% Similarity=-0.078 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-------hhHHHH
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS-------GNHVLL 423 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l 423 (586)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555566666666666666554 2223 455666666667777777777777777777665543 245566
Q ss_pred HHHHhhcCChHHHHHHHHHHHh
Q 007878 424 SNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.+|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777777777777776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-05 Score=67.77 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALL 390 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 390 (586)
+...+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3556777777888888888888888888754 34 5677888888888889999888888887 3334 577889999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007878 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.++...|++++|+..++++++++|++...+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999999887654443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.16 E-value=9.6e-06 Score=67.96 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCchhH----HHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKL-------DPNDSGNH----VLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888889999998888888888 99999999 9999999999999999999999876
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.2e-05 Score=79.90 Aligned_cols=129 Identities=8% Similarity=-0.010 Sum_probs=91.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-------------ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-------------GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP- 381 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 381 (586)
.+..+...+.+.|++++|+..|+...+...-.+ ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444455555555555555555443211111 1467888888999999999999999887 3333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH-HHHHHHh
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL-VRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 445 (586)
+...|..+..++...|++++|+..|+++++++|++..++..+..++...|+++++.+ .++.|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999999999999988774 4555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=3e-05 Score=66.31 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
...|..+..++...|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577888888899999999999999999999999999999999999999999999999888763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.8e-05 Score=76.74 Aligned_cols=164 Identities=7% Similarity=-0.094 Sum_probs=108.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCCC-hH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY----VTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKPG-AE 352 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 352 (586)
+..+...|...|++++|.+.+.++......+ ++. ...+.+-..+...|+.++|..++....... +..+. ..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 5667777778888888888777766521111 222 123333344556678888888877664321 22222 55
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCC----c
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-----P--MRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD---PND----S 417 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 417 (586)
++..|...|...|++++|..++++. . .+| ...++..++..|...|++++|...++++.... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7778888888889988888888775 1 112 23567777788888999999998888887653 222 2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..+..++..+...|++++|...+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455677777888999998888776653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-05 Score=64.42 Aligned_cols=100 Identities=6% Similarity=-0.129 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007878 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLN 391 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 391 (586)
+...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566667777777777777777777776643 1223566777777777777777777777776 2233 4667778888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC
Q 007878 392 ACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887766
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=64.83 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=51.1
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhh
Q 007878 358 VDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLLSNMFAA 429 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 429 (586)
...+.+.|++++|.+.|++. ...|+. ..+..+..++...|++++|...++++.+..|++ +..+..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444555555555555554 111221 345555556666666666666666666666666 4556666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 007878 430 TGRWEEADLVRKEMKD 445 (586)
Q Consensus 430 ~g~~~~a~~~~~~m~~ 445 (586)
.|++++|...++++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.1e-05 Score=61.93 Aligned_cols=100 Identities=14% Similarity=0.037 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP---TISVWGALLN 391 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 391 (586)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455555666666666666666666543 1223555666666677777777777776665 2233 4666777777
Q ss_pred HHHHc-CCHHHHHHHHHHHhccCCCCc
Q 007878 392 ACRVY-GKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 392 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+... |++++|...++++.+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777888888888777777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00042 Score=66.18 Aligned_cols=178 Identities=9% Similarity=0.001 Sum_probs=130.0
Q ss_pred HHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCC--HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC-HHHHHH
Q 007878 263 IQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGH--ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA-VEKGMK 336 (586)
Q Consensus 263 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~ 336 (586)
++++..+++.+.. .+..+|+.-...+...|+ ++++++++.++.+. . +-|...|+.-...+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--d-prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--D-ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 5677777777653 577889888888888784 89999999999983 2 2366777766666777787 699999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----
Q 007878 337 IFYSMTLKYGIKPGAEHYACVVDLLGRA--------------GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY---- 396 (586)
Q Consensus 337 ~~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---- 396 (586)
.++.+.+.. +-|...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 167 ~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 999998652 33566676666655554 4578899998887 2333 778887665555544
Q ss_pred -------CCHHHHHHHHHHHhccCCCCchhHHHHHHH---HhhcCChHHHHHHHHHHHh
Q 007878 397 -------GKPELGRIAADNLFKLDPNDSGNHVLLSNM---FAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 397 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~ 445 (586)
+.++++++.+++++++.|++...+..++.. ....|..+++...+.++++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457899999999999999986655444432 2346778888889988876
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.3e-05 Score=61.64 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=60.8
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCC-h---HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPG-A---EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNA 392 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 392 (586)
...+...|++++|...|+.+.+. .|+ . ..+..+...+.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455556666666666655543 222 1 35555666666666666666666665 22222 4556667777
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007878 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
+...|++++|...++++.+..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 7788888888888888888888766554433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-05 Score=63.94 Aligned_cols=95 Identities=6% Similarity=-0.022 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------chhHHH
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPND-------SGNHVL 422 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 422 (586)
..+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|...++++.+..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566667777777777777777765 22 2356677778888888888899998888888887665 778889
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 007878 423 LSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.9e-05 Score=64.95 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCch
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDP------NDSG 418 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 418 (586)
.+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++.+..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555543 00111 34555666667777777777777777766421 1234
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 419 NHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+..++..|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667788888889999999988887764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=64.33 Aligned_cols=106 Identities=6% Similarity=-0.077 Sum_probs=56.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 007878 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM----RPT----ISVWGA 388 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 388 (586)
+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444455555555555544432 1223444445555555555555555555544 11 112 456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
+...+...|++++|...++++.+..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 67777777777777777777777776 34444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.8e-05 Score=73.94 Aligned_cols=93 Identities=6% Similarity=-0.058 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 393 (586)
..|..+..++.+.|++++|+..|+.+.+. -+.+...|..+..+|...|++++|+..|++. .+.| +...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 55666666666666666666666666543 1223556666666666777777776666665 2233 455666666666
Q ss_pred HHcCCHHHH-HHHHHHHh
Q 007878 394 RVYGKPELG-RIAADNLF 410 (586)
Q Consensus 394 ~~~~~~~~a-~~~~~~~~ 410 (586)
...|+.++| ...++++.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 33444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.5e-06 Score=66.57 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=51.3
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007878 364 AGLVDRAYEIIKEM-PM---RP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 12 234566666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 007878 439 VRKEMKD 445 (586)
Q Consensus 439 ~~~~m~~ 445 (586)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=70.97 Aligned_cols=122 Identities=7% Similarity=-0.114 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-CC--------------h
Q 007878 50 SAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE-PD--------------L 111 (586)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~ 111 (586)
..+......|++++|.+.++.-.. .....|..+...+.+.|++++|+..|++....... |+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344445556777777777764432 23446777777888899999999999988764221 11 1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007878 112 ITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 112 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
..+..+..++...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344444445555555555555555555542 233444444455555555555555544443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00011 Score=74.15 Aligned_cols=163 Identities=9% Similarity=-0.060 Sum_probs=95.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHhCCC-Cch----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----eeH
Q 007878 215 ISSVLSACARIAGLELGRSVHAVAVKACVE-GNI----FVGSALVDMYGKCGSIQDAEIAFNKMPE-----RN----LVC 280 (586)
Q Consensus 215 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~ 280 (586)
+..+...|...|++++|.+.+..+.+.-.. ++. .+.+.+...+...|+++.|..+++.... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344455555555555555555544432111 111 1223333334445666666666655431 11 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCC--CCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hH
Q 007878 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEA--VPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AE 352 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~--~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~ 352 (586)
+..+...|...|++++|..++++....-.+. .|. ..++..++..|...|++++|..+++.......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777888888888888887765421121 122 356777888888999999999888876543211111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777778888998888777655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.4e-05 Score=61.72 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHH
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVL 322 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll 322 (586)
+..+...|.+.|++++|.+.|++..+ .+...|+.+..+|.+.|++++|++.|++.++......++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444555555555555555554332 233445555555555555555555555554411111111 12344444
Q ss_pred HHhhccCCHHHHHHHHHHhH
Q 007878 323 SACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~ 342 (586)
.++...|++++|++.|+...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=76.12 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=77.7
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA----YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH----HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHH
Confidence 34556666666777777777777777766 2344332 223333333332221 1367788
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCChH
Q 007878 358 VDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF-AATGRWE 434 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 434 (586)
..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..+..+. ...+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999988886 3334 6778888888999999999999999999999998888888887774 3456677
Q ss_pred HHHHHHHHHHhC
Q 007878 435 EADLVRKEMKDV 446 (586)
Q Consensus 435 ~a~~~~~~m~~~ 446 (586)
.+..++++|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888877653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00013 Score=74.61 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHH
Q 007878 257 YGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVE 332 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~ 332 (586)
|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+ . .| +...+..+..+|...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--L--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--S--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3444555555555554332 2334445555555555555555555555544 1 12 2344444445555555555
Q ss_pred HHHHHHHHhH
Q 007878 333 KGMKIFYSMT 342 (586)
Q Consensus 333 ~a~~~~~~~~ 342 (586)
+|.+.|+++.
T Consensus 92 eA~~~~~~al 101 (477)
T 1wao_1 92 AALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=6.8e-05 Score=73.81 Aligned_cols=88 Identities=7% Similarity=-0.050 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888889999999999999999887 5555 57788899999999999999999999999999999999999999888
Q ss_pred hcCChHHHHH
Q 007878 429 ATGRWEEADL 438 (586)
Q Consensus 429 ~~g~~~~a~~ 438 (586)
..++.+++.+
T Consensus 353 ~~~~~~~a~k 362 (370)
T 1ihg_A 353 KIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.7e-05 Score=63.89 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----h
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----A 351 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 351 (586)
++..+...|...|++++|+..+++..+.... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3444455555556666666655555441000 011 134555666666667777777666665432111111 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
..+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++++|...++++.++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566666777777777777776664 10111 3456667777888888888888888877643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=7.6e-05 Score=60.23 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=62.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007878 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACR 394 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 394 (586)
+..+...+.+.|++++|+..|+...+. .| +...|..+..++.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455666677777777777776643 34 4566666777777777777777777765 3334 4566777777778
Q ss_pred HcCCHHHHHHHHHHHhccCCCC
Q 007878 395 VYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
..|++++|+..++++++.+|.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 8888888888888888877764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=62.38 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 007878 328 AGAVEKGMKIFYSMTLKYGI-KP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
.|++++|+..|++..+. +. .| +...+..+...|.+.|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555555555555421 10 12 2445556666666666666666666665 2223 4566667777777777788888
Q ss_pred HHHHHHhccCCCCchhH
Q 007878 404 IAADNLFKLDPNDSGNH 420 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~~ 420 (586)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888777777765443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.82 E-value=6.3e-05 Score=64.23 Aligned_cols=74 Identities=14% Similarity=-0.038 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-hhHHHHH
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS-GNHVLLS 424 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 424 (586)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 467778888888899999998888876 3334 577888899999999999999999999999999887 4444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00023 Score=72.32 Aligned_cols=124 Identities=9% Similarity=0.027 Sum_probs=94.3
Q ss_pred HhhccCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 007878 324 ACSRAGAVEKGMKIFYSMTLKYG--IKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM---------PMRPT-ISVWG 387 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 387 (586)
.+...|++++|+.++++...... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35567888888888876654321 2222 567888888899999999988888775 23344 35688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCchhH---HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 388 ALLNACRVYGKPELGRIAADNLFK-----LDPNDSGNH---VLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.|...|...|++++|+.+++++++ ++|+.+.+- ..+...+...|++++|+.++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999887 467765544 467777888999999999999998743
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.6e-05 Score=64.45 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-PM-------RPT-ISVW----GALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665554 33 675 4577 889999999999999999999999999987765
Q ss_pred HH
Q 007878 420 HV 421 (586)
Q Consensus 420 ~~ 421 (586)
..
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.2e-05 Score=73.20 Aligned_cols=149 Identities=7% Similarity=-0.046 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007878 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
...+..+...|.+.|++++|...|++..+ |+.. .+...|+.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l---~---------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAV---K---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHH---H---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHH---H---------HHHHHHHHHH
Confidence 45677788899999999999999998653 3221 122233344433222 1 1266777888
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCCHH
Q 007878 325 CSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNA-CRVYGKPE 400 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~~~~~ 400 (586)
|.+.|++++|+..++...+. .| +...|..+..+|...|++++|...|++. .+.|+. ..+..|... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888753 34 5778888889999999999999999887 555543 344444443 23456677
Q ss_pred HHHHHHHHHhccCCCCc
Q 007878 401 LGRIAADNLFKLDPNDS 417 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~ 417 (586)
.+...+.+++...|.++
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 88889999988888654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=7.4e-05 Score=58.79 Aligned_cols=91 Identities=13% Similarity=0.006 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhHH
Q 007878 350 GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNHV 421 (586)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 421 (586)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456667777777888888888887776 2233 56778888888899999999999999999999987 66666
Q ss_pred HHHHHHhhcCChHHHHHHH
Q 007878 422 LLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~ 440 (586)
.++.++...|+.++|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777776666665554433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00017 Score=55.77 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788899999999999999999999999999999999999999999999999999999988753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00047 Score=70.04 Aligned_cols=115 Identities=12% Similarity=-0.016 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 007878 329 GAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----------------ISVWGALL 390 (586)
Q Consensus 329 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll 390 (586)
+++++|...|+..... .| ....|..+...|.+.|++++|+..|++. ...|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444555555433321 22 2557788889999999999999999987 22232 57899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.++.+.|++++|+..++++++++|++..++..++.+|...|++++|...|++..+.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999874
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00021 Score=53.70 Aligned_cols=81 Identities=23% Similarity=0.259 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666667777777777777777765 2223 56677888888888899999999999999989988888888887776
Q ss_pred hcC
Q 007878 429 ATG 431 (586)
Q Consensus 429 ~~g 431 (586)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00098 Score=69.42 Aligned_cols=167 Identities=11% Similarity=0.016 Sum_probs=122.6
Q ss_pred HHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCC----------HHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhcc
Q 007878 263 IQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGH----------ADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRA 328 (586)
Q Consensus 263 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~ 328 (586)
-++|.+.++.+.+ .+..+|+.--..+...|+ ++++++.++++.+ . .| +..+|..-..++.+.
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--V--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHc
Confidence 3456666666553 344566665555555555 7888888888887 2 24 456677666677777
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 007878 329 G--AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-LVDRAYEIIKEM-PMRP-TISVWGALLNACRVY------- 396 (586)
Q Consensus 329 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 396 (586)
| +++++++.++.+.+.. +-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 7 6688888888887641 234666777677777788 888899988887 4344 678888877776653
Q ss_pred -------CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007878 397 -------GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 397 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
+.++++.+.+.+++..+|++..+|..+..++.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00029 Score=69.28 Aligned_cols=112 Identities=10% Similarity=0.047 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 007878 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRP-TISVWGALLNACR 394 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~ 394 (586)
..+..+...+.+.|++++|+..|+...+. .|... .....+++.+ ..| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777766532 01100 0001111111 122 4567888999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00016 Score=57.42 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=63.1
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 370 AYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 370 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|++.|++. ...| +...|..+...+...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555554 3333 5677888888899999999999999999999999999999999999999999999999998876
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00016 Score=60.46 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=58.5
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-
Q 007878 365 GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK----------PELGRIAADNLFKLDPNDSGNHVLLSNMFAATG- 431 (586)
Q Consensus 365 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 431 (586)
+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444444444443 2222 33444444444444433 679999999999999999999999999999875
Q ss_pred ----------ChHHHHHHHHHHHhC
Q 007878 432 ----------RWEEADLVRKEMKDV 446 (586)
Q Consensus 432 ----------~~~~a~~~~~~m~~~ 446 (586)
++++|.+.|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999999874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=50.05 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007878 381 PTISVWGALLNACRVYGK---PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
+|...+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778888888765555 79999999999999999999999999999999999999999999988653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0029 Score=52.08 Aligned_cols=65 Identities=12% Similarity=-0.072 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 007878 382 TISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA----TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 382 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 448 (586)
+...+..|...|.. .+++++|...++++.+. .++.....|+.+|.. .++.++|.+.+++..+.|.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 33444444444444 44555555555555554 234555666666666 5666666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00078 Score=52.69 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56678888999999999999999999999999999999999999999999999999999999864
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.043 Score=43.43 Aligned_cols=146 Identities=11% Similarity=0.061 Sum_probs=109.5
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007878 283 AIIGG--YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 283 ~li~~--~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
.|+.+ +.-.|..++..++..+... + .+..-||.++.-...+-+-+-..+.++.+-+-+.+
T Consensus 10 kLmeAK~~ildG~v~qGveii~k~~~--s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------- 71 (172)
T 1wy6_A 10 KLMDAKKFLLDGYIDEGVKIVLEITK--S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------- 71 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcC--C---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc-------------
Confidence 34444 4457888888998888877 2 35667777777666667777777777777443322
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 007878 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
..+|++.....-+-.++. +..-....+..+..+|+-+.-..+...++...|.++....-++++|.+.|+..+|.+++
T Consensus 72 -s~C~NlKrVi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 72 -DKCQNLKSVVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp -GGCSCTHHHHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HhhhcHHHHHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 246666666666666642 44556777888899999999999999987777888999999999999999999999999
Q ss_pred HHHHhCCCc
Q 007878 441 KEMKDVGIK 449 (586)
Q Consensus 441 ~~m~~~g~~ 449 (586)
++.-++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999985
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=66.88 Aligned_cols=125 Identities=10% Similarity=-0.054 Sum_probs=85.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCC-CCC---C-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc--CCC---CC-hHHHH
Q 007878 287 GYAHQGHADMALSSFEEMTSMRCE-AVP---N-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY--GIK---PG-AEHYA 355 (586)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~~~~g-~~p---d-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~ 355 (586)
.+...|++++|+.++++..+.... +-| + ..+++.|..+|...|++++|..++++...-+ -+. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888776652111 112 2 3577888888888888888888887765321 112 22 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM---------PMRPTIS-VWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
.|...|...|++++|+.++++. +..|+.. +.+.|-.++...+.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888775 2234433 334455556678888999988888765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.002 Score=64.37 Aligned_cols=116 Identities=9% Similarity=0.109 Sum_probs=86.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCc---hh
Q 007878 358 VDLLGRAGLVDRAYEIIKEM-P-----MRPT----ISVWGALLNACRVYGKPELGRIAADNLFKL-----DPNDS---GN 419 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~-----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 419 (586)
+..+.+.|++++|++++++. . +.|+ ..+++.|..+|...|++++|+.+++++++. +|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778888888888765 1 1222 357888889999999999999999988863 44444 46
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 007878 420 HVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMK 491 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 491 (586)
+..|+.+|...|++++|..++++..+--. ...+..||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999998875210 0123569988888888877777765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00051 Score=57.36 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=33.9
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCchh
Q 007878 368 DRAYEIIKEM-PMRP-TISVWGALLNACRVY-----------GKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 368 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
++|+..|++. .+.| +..+|..+..+|... |++++|+..|+++++++|++...
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 3555555544 3333 334555555555544 58999999999999999987533
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.009 Score=62.12 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007878 292 GHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGA----------VEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 292 g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
...++|++.++++.. +.|+ ...|+.--.++.+.|+ +++++..++.+.+.. +-+...|+--..+
T Consensus 43 ~~~eeal~~~~~~l~----~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345688999999998 3466 4556655555666666 899999999998652 3346777777778
Q ss_pred HHhcC--ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc-----
Q 007878 361 LGRAG--LVDRAYEIIKEM-PMR-PTISVWGALLNACRVYG-KPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT----- 430 (586)
Q Consensus 361 ~~~~g--~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 430 (586)
+.+.| ++++++++++++ ... -+..+|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88889 779999999998 333 47889998888888888 899999999999999999999999888887763
Q ss_pred ---------CChHHHHHHHHHHHh
Q 007878 431 ---------GRWEEADLVRKEMKD 445 (586)
Q Consensus 431 ---------g~~~~a~~~~~~m~~ 445 (586)
++++++.+.+++...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 557888888877765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=48.53 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34677888888999999999999999999999999999999999999999999999999998764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.011 Score=56.79 Aligned_cols=63 Identities=19% Similarity=0.103 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555555555556666666666666666542 44555556666666666666666655544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0097 Score=48.86 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHH
Q 007878 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK----CNEVGLA 165 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A 165 (586)
+++++|+..|++..+.| .|+. . +-..+...+.+++|.+.++...+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777766 2222 2 5555556666777777777777665 45666666666766 5667777
Q ss_pred HHHHhcCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 007878 166 KVVFDGIID-KNDVSWCSMLVVYVQ----NYEEENGCQMFLTARREG 207 (586)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 207 (586)
.+.|++..+ .++.++..|...|.. .+++++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 776665532 345555666666665 566666666666665554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.003 Score=49.85 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
...+..+...|.+.|++++|+..|++. ...| +...|..+..++...|++++|...+++++++.|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 445555555666666666666666554 2222 355666666667777777777777777766655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0066 Score=60.55 Aligned_cols=93 Identities=9% Similarity=-0.059 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 007878 328 AGAVEKGMKIFYSMTLKY--GIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM---------PMRPTI-SVWGALLN 391 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~ 391 (586)
.|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677777666554321 12222 356667777777777777777776664 223433 45777777
Q ss_pred HHHHcCCHHHHHHHHHHHhc-----cCCCCchhH
Q 007878 392 ACRVYGKPELGRIAADNLFK-----LDPNDSGNH 420 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 420 (586)
.|...|++++|+.+++++++ ++|+.+.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 77888888888877777766 356655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00022 Score=69.72 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=168.5
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 007878 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
..+.+|+.|..++.+.|++.+|+.-|-+ ..|+..|..+|....+.|.+++-+..+.-.++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 3567899999999999999998876644 45667788999999999999988887766655422 4455567888999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC------------------------CChh
Q 007878 123 DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID------------------------KNDV 178 (586)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 178 (586)
+.+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9998876555442 46777777888888899999999888876632 3677
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007878 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
+|-.+-.+|+..+.+.-|--.--.+. +.|| ....++.-|-..|.+++-..+++..... -.....+++-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 89999999999998877644333332 2222 2234555677788888877777766521 1235677888888888
Q ss_pred hcCCHHHHHHHHhhCCC-----------CCeeHHHHHHHHHHhcCCHHHHHH
Q 007878 259 KCGSIQDAEIAFNKMPE-----------RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
|- ++++-.+.++.... .....|.-++-.|.+-.++|.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 33444443333221 355678888888988888887753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0037 Score=48.02 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=32.9
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
...|..+...|...|++++|+..|++..+. .| +...|..+..+|...|++++|...|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555556666666666555551 12 23455555555555666666665555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.013 Score=58.59 Aligned_cols=101 Identities=11% Similarity=-0.056 Sum_probs=67.6
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKY--GIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM---------PMRPT-ISV 385 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 385 (586)
+..+.+.|++++|+.+++...... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334455667777777776665321 12222 456677777777778888777777665 23344 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCchhHHH
Q 007878 386 WGALLNACRVYGKPELGRIAADNLFK-----LDPNDSGNHVL 422 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 422 (586)
++.|...|...|++++|+.+++++++ ++|+.+.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888889999999999999988887 46777655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.01 Score=48.85 Aligned_cols=65 Identities=9% Similarity=-0.089 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 381 PTISVWGALLNACRVYG---KPELGRIAADNLFKLD-P-NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++..+...+..++.+.+ +.++|+.+++.+.+.+ | .+...++.|+-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556666666666655 4457777777777766 5 3455666677777777777777777777765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.11 Score=56.64 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=100.0
Q ss_pred HHHHcCCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007878 84 SNAVLGGRPKNAID-AFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEV 162 (586)
Q Consensus 84 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 162 (586)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+. . ..-.....+.|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 33445788888876 44211 1122336677777788888888766531 1 1113456778999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC
Q 007878 163 GLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKAC 242 (586)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (586)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987763 567899999999999999999999987753 3444445555666666555554444443
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007878 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 273 (586)
- ++....+|.+.|++++|.+++.++
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 233444566677777776665443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0027 Score=63.39 Aligned_cols=83 Identities=8% Similarity=-0.022 Sum_probs=67.7
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCc---hhHHHHH
Q 007878 363 RAGLVDRAYEIIKEM---------PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKL-----DPNDS---GNHVLLS 424 (586)
Q Consensus 363 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 424 (586)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|+.+ .++..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889998888775 22233 367899999999999999999999999873 45544 5677899
Q ss_pred HHHhhcCChHHHHHHHHHHHh
Q 007878 425 NMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0056 Score=46.59 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=28.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007878 359 DLLGRAGLVDRAYEIIKEM-PMRP-TIS-VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
..+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|++...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3344455555555555444 2222 233 44444444555555555555555555555544433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.54 Score=48.93 Aligned_cols=254 Identities=9% Similarity=-0.025 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc
Q 007878 147 SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA 226 (586)
Q Consensus 147 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 226 (586)
..-+..+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+=..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3344555666677777777776665 33333333445566667777776766666655444 223334555555555444
Q ss_pred CcHHH--HHHHHHHHHhC-----------CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee---HHHHHHHHHH
Q 007878 227 GLELG--RSVHAVAVKAC-----------VEGN-IFVGSALVDMYGKCGSIQDAEIAFNKMPERNLV---CWNAIIGGYA 289 (586)
Q Consensus 227 ~~~~a--~~~~~~~~~~~-----------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~ 289 (586)
.+... .+=+..+...| +.++ ......++..+.+-..+ ....... .++.. .+..-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 33221 11111111111 1111 11122222222222222 1121111 11111 1111122223
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007878 290 HQGHADMALSSFEEMTSMRCEAVPNYV--TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
+ .+.+.|..+|....+. ..+.+... ....+.......+...++...+...... .++.....-.+....+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQA-QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhc-cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 3667777777776541 22222221 2222333344444344555555544322 23333333333444466778
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 368 DRAYEIIKEMPMRP--TISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 368 ~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+.|...|+.|+..+ ...-..=+..++...|+.++|..+++.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887774432 122222334455667777777777777764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.011 Score=44.83 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=52.8
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChH-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHc
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAE-HYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNACRVY 396 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 396 (586)
....+...|++++|+..|+.+.+. .| +.. .+..+...|...|++++|.+.|++. ...|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 345667778888888888877653 34 345 6777777788888888888888776 333332 22211
Q ss_pred CCHHHHHHHHHHHhccCCCC
Q 007878 397 GKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~ 416 (586)
+.+.++...+++....+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 34555666666655555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.068 Score=51.26 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=109.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHh--cCC---HHHHHHHHHHhhhccCCCCCC-HHHHHHHHHH
Q 007878 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAH--QGH---ADMALSSFEEMTSMRCEAVPN-YVTLVCVLSA 324 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a 324 (586)
..++.++.-.-...++....... ..+..+|...+.+... .+. ..+|..+|++..+ ..|+ ...+..+..+
T Consensus 168 ~~I~~aL~~~l~~~e~~r~~~~~-p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~----lDP~~a~A~A~la~a 242 (372)
T 3ly7_A 168 ESLSKALNQPWPQRMQETLQKIL-PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALV 242 (372)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHS-CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHHHhCchhhHHHHHHHhccC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence 34444443333333444444443 3577889988877543 333 5789999999998 3476 4566655555
Q ss_pred hhcc---C-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 007878 325 CSRA---G-----AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRV 395 (586)
Q Consensus 325 ~~~~---g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 395 (586)
|... + ........+.........+.+...|..+.-.+...|++++|...++++ .+.|+...|..+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5311 1 111111122221111123556788888887788889999999999998 556888888888888999
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007878 396 YGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.|++++|...++++..++|..+ +|...-
T Consensus 323 ~G~~~eA~e~~~~AlrL~P~~~-t~~~~~ 350 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLRPGAN-TLYWIE 350 (372)
T ss_dssp TTCHHHHHHHHHHHHHHSCSHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcC-hHHHHh
Confidence 9999999999999999999764 454443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.071 Score=58.20 Aligned_cols=165 Identities=13% Similarity=0.036 Sum_probs=84.4
Q ss_pred hcCChHHHHH-HHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHH
Q 007878 158 KCNEVGLAKV-VFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 158 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 236 (586)
..+++++|.+ ++..++.+ .....++..+.+.|.+++|+++.+. .. .-.......|+++.|.++..
T Consensus 611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHH
Confidence 4566777766 55333301 1225566666667777777665421 10 01122344566666666543
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH
Q 007878 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~ 316 (586)
.+ .+...|..|..++.+.|+++.|++.|..+.. |..+...|...|+.+...
T Consensus 677 ~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~------------------ 727 (814)
T 3mkq_A 677 DE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLV------------------ 727 (814)
T ss_dssp TC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHH------------------
T ss_pred hh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHH------------------
Confidence 22 2456666677777777777777666665432 222222233333333333
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
.+.......|+++.|...|... | -+...+++|.+.+++++|..+-+..+
T Consensus 728 ---~~~~~a~~~~~~~~A~~~~~~~----g------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 728 ---TLAKDAETTGKFNLAFNAYWIA----G------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHHH----T------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ---HHHHHHHHcCchHHHHHHHHHc----C------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3333444445555555554332 1 12234555666777888888877763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.029 Score=51.58 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=67.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-chhHHHHHHHHhhc-CChHHH
Q 007878 368 DRAYEIIKEM-PMRPT---ISVWGALLNACRV-----YGKPELGRIAADNLFKLDPND-SGNHVLLSNMFAAT-GRWEEA 436 (586)
Q Consensus 368 ~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 436 (586)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|+++++++|+. ..+++..+..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555554 44565 5677777777777 499999999999999999975 99999999999884 999999
Q ss_pred HHHHHHHHhCCCccCC
Q 007878 437 DLVRKEMKDVGIKKGA 452 (586)
Q Consensus 437 ~~~~~~m~~~g~~~~~ 452 (586)
.+.+++........+|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999999987665333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.086 Score=40.51 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-----P----MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
-+..|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...+++++++.|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555555555555555543 0 113456788888899999999999999999999999887664433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.12 Score=38.70 Aligned_cols=68 Identities=10% Similarity=-0.010 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 349 PGAEHYACVVDLLGRAGL---VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455666666666654443 57777777776 3344 45666666777888888888888888888888773
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.074 Score=43.78 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 349 PGAEHYACVVDLLGRAG---LVDRAYEIIKEM-PMR-P--TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
++..+...+..++.+.+ +.++++.++++. ... | +...+..|.-++.+.|++++|++.++.+++.+|++..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45555555555566655 444566655554 112 3 244566677778999999999999999999999876544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.16 Score=40.17 Aligned_cols=64 Identities=9% Similarity=-0.083 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 382 TISVWGALLNACRVYGKPEL---GRIAADNLFKLD-P-NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..+-..+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|++.++.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444333332 444444444443 2 1223344455555555555555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.5 Score=39.88 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007878 256 MYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGM 335 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 335 (586)
.-..+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ |..+.--|.-.|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHHHH
Confidence 345678888888777665 3566788888888888888888888877654 223444455566666555
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007878 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 336 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
.+-+....+ | -++.-...+.-.|+++++.+++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 444433222 1 13333444556777777777777664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.5 Score=37.06 Aligned_cols=128 Identities=8% Similarity=-0.003 Sum_probs=73.7
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007878 156 YGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
..++|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44667777777776655 3566777777777777777777777765532 333444444556665555444
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007878 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
+.....| -++.....+.-.|+++++.++|.+..+.+.. +......|..+.|.++.+++-
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHhC
Confidence 4444433 1233444455677888877777665541111 111122566777777776653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=1.2 Score=35.45 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=54.0
Q ss_pred hcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007878 259 KCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 338 (586)
+||++......+-.+. .+..-.+.-+..+...|+-|+-.+++..+.. +.+|++.....+..||.+.|+..+|.+++
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4555555555444443 2333445556677777877777777777543 24567777777778888888888888888
Q ss_pred HHhHHhcCCC
Q 007878 339 YSMTLKYGIK 348 (586)
Q Consensus 339 ~~~~~~~~~~ 348 (586)
.++.++ |++
T Consensus 149 ~~AC~k-G~k 157 (172)
T 1wy6_A 149 IEACKK-GEK 157 (172)
T ss_dssp HHHHHT-TCH
T ss_pred HHHHHh-hhH
Confidence 777654 543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=1.9 Score=34.71 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 381 PTISVWGALLNACRVYGK---PELGRIAADNLFKLDPN-DSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|+..+--.+..++.+..+ ..+++.+++.+.+..|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455554455555555443 33566666666666653 233445666667777777777777777765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.29 Score=51.92 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=49.3
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
|...|+++.|+.+.+++....|.+-.+|..|+..|...|+|+.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6678999999999999999999999999999999999999999999999884
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.54 Score=38.20 Aligned_cols=54 Identities=9% Similarity=0.000 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 007878 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIK 449 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 449 (586)
.+++++|.++|+.++++...-+..+...+..-.+.|+...|++++.+....+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 378899999999998775555666777777778899999999999998876643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.4 Score=36.65 Aligned_cols=64 Identities=13% Similarity=-0.011 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLD-------PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..-+..|...+...++++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556778888999999999999999998852 33456788999999999999999999999876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.08 E-value=0.52 Score=46.54 Aligned_cols=341 Identities=10% Similarity=0.036 Sum_probs=186.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhcc------------------
Q 007878 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDE------------------ 70 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------------------ 70 (586)
|+..|..++.++.+.|.+++-...+.-..+. ..++.+=+.|+-+|+|.+++.+-.+++..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~l 159 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 159 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCC
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccC
Confidence 6777889999999999888777766544443 45566677889999988876654333221
Q ss_pred ----------CC------------------------CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 007878 71 ----------MP------------------------ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA 116 (586)
Q Consensus 71 ----------~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 116 (586)
+. ..++.+|-.+-.+|...+.+.-|--.--.+.- .|| -...
T Consensus 160 YeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~e 234 (624)
T 3lvg_A 160 YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEE 234 (624)
T ss_dssp STTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSG
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHH
Confidence 11 02444555555555555554444333222221 111 1222
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC----CCC-------ChhhHHHHHH
Q 007878 117 FLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI----IDK-------NDVSWCSMLV 185 (586)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~ 185 (586)
++..|-..|.+++-..+++..+... ......++-|.-.|+|- +.++..+-++.. .-| ....|..++-
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence 3334455555555555555444211 34566788888888776 344444433322 112 4557889999
Q ss_pred HHHHcCChHHHHHHH-------------HHHHHCCCCCCHhHH---------------HHHHHHHhcccCcHHHHHHHHH
Q 007878 186 VYVQNYEEENGCQMF-------------LTARREGVEPKDFMI---------------SSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~-------------~~m~~~g~~p~~~t~---------------~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
.|.+-.+++.|.... ++.... .+|...| +-+|.++...=+...+.+++..
T Consensus 313 LY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k 390 (624)
T 3lvg_A 313 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 390 (624)
T ss_dssp HHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHT
T ss_pred HHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHh
Confidence 999888888764321 111110 1222222 3344444443344444443332
Q ss_pred HHHh----------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------------eeHHHHH-HHHHHhcCCH
Q 007878 238 AVKA----------CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN------------LVCWNAI-IGGYAHQGHA 294 (586)
Q Consensus 238 ~~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~l-i~~~~~~g~~ 294 (586)
.-.. ...-+..+-.++-+.|....+++.-+...+.-..-| ..-+..+ ...|.+++++
T Consensus 391 ~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw 470 (624)
T 3lvg_A 391 VKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRW 470 (624)
T ss_dssp TTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHH
T ss_pred cCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccH
Confidence 1110 011234566677777777777766555544433222 2222222 2235667778
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007878 295 DMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
++++++.++ .++ |.-.+...+.+|+.+-+.++++..+.. | +.+.|.+.+-.|...=+++.++++-
T Consensus 471 ~qsi~l~Kk-----Dkl------ykDAietAa~S~~~elaeeLL~yFv~~-g---~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 471 KQSVELCKK-----DSL------YKDAMQYASESKDTELAEELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHHSSCSST-----TCC------TTGGGTTTTTCCCTTHHHHHHHHHHHH-C---STHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHHHHHh-----ccc------HHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHHHHHHHHhhccChHHHHHHH
Confidence 887765432 222 223445567889999999988888764 2 4456666666666677788887774
Q ss_pred H
Q 007878 375 K 375 (586)
Q Consensus 375 ~ 375 (586)
-
T Consensus 536 W 536 (624)
T 3lvg_A 536 W 536 (624)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.81 E-value=6.2 Score=36.80 Aligned_cols=169 Identities=8% Similarity=0.023 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHhHHHHHHHHHh
Q 007878 148 VCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQM----FLTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778888888888887543 23345666776665554 445566788888888888887776
Q ss_pred cccCcH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhc---CC
Q 007878 224 RIAGLE-LGRSVHAVAVK----AC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ---GH 293 (586)
Q Consensus 224 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 293 (586)
....-+ .-..+...+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 543221 12334444443 32 2347788899999999999999999988743322455555555444443 43
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007878 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 294 ~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
..++-- ..-..++ -|...|++..|..+|+...++
T Consensus 184 ~~e~dl----------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE----------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH----------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH----------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1111222 345678888888888877644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.76 E-value=1 Score=35.51 Aligned_cols=88 Identities=16% Similarity=0.018 Sum_probs=54.4
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHH
Q 007878 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR---AYEIIKEM-PMR-P--TISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
..+.+-|...... | .|+..+--.+..++.+.....+ ++.++++. ... | .......|.-++.+.|+++.|.+
T Consensus 18 ~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444332 2 2555555556666666665554 66666655 222 2 22344556677889999999999
Q ss_pred HHHHHhccCCCCchhHH
Q 007878 405 AADNLFKLDPNDSGNHV 421 (586)
Q Consensus 405 ~~~~~~~~~p~~~~~~~ 421 (586)
.++.+++.+|+|..+..
T Consensus 96 ~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHH
Confidence 99999999998865543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.24 Score=45.53 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCC
Q 007878 353 HYACVVDLLGRA-----GLVDRAYEIIKEM-PMRPT--ISVWGALLNACRV-YGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 353 ~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~ 415 (586)
.|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.+++.+.++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344444444442 4555555555444 33331 3344444444444 25555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.23 E-value=19 Score=39.05 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=8.9
Q ss_pred HHHcCCChhHHHHHHHHH
Q 007878 85 NAVLGGRPKNAIDAFINL 102 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m 102 (586)
|....|+.++++.++...
T Consensus 383 GlIh~g~~~~gl~~L~~y 400 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPY 400 (963)
T ss_dssp HHHTSSCTTTHHHHHTTT
T ss_pred hhhccCchHHHHHHHHHh
Confidence 344455555555554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.15 E-value=3.2 Score=32.90 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 401 LGRIAADNLFKLDPN-DSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+++.+++.+.+.+|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445555555544442 223344455555555555555555555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=1 Score=44.03 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCccCCc
Q 007878 386 WGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD-----VGIKKGAG 453 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 453 (586)
...++.++...|+.+++...+..+...+|-+...+..++.+|.+.|+..+|.+.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445566677888888888888888888998888899999999999999999988887754 47777653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.33 E-value=10 Score=37.62 Aligned_cols=252 Identities=9% Similarity=-0.032 Sum_probs=123.7
Q ss_pred CCchHHHHHHHHHHHh-----CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCC---CcccHHHHHHHH----HcCCC
Q 007878 24 HIPVTGKQLHALALKS-----GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPER---NLATWNAYISNA----VLGGR 91 (586)
Q Consensus 24 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~----~~~g~ 91 (586)
+++..|.+.+-.+.+. .......+...++..+.+.|+++...+.+..+..+ -..+-..+++.+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777766666543 23445566778888999999988876655443321 111222333222 11222
Q ss_pred hhH--HHHHHHHHHH--CC-CCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCC---hhHHHHHHHHHHh
Q 007878 92 PKN--AIDAFINLRR--TG-GEPD---LITFCAFLNACSDCSLLQLGRQLHGFLVRS--GFDGN---VSVCNGLVDFYGK 158 (586)
Q Consensus 92 ~~~--A~~~~~~m~~--~g-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~ll~~~~~ 158 (586)
.+. -+.+.+.... .| +-.. ...-..|...+-..|++.+|..++..+... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 221 1111111110 11 0000 011134555566677888888777776432 21111 3456667777778
Q ss_pred cCChHHHHHHHhcCCC------CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHH----HHh
Q 007878 159 CNEVGLAKVVFDGIID------KN----DVSWCSMLVVYVQNYEEENGCQMFLTARRE-GVEPKDFMISSVLS----ACA 223 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~----~~~ 223 (586)
.+++..|..++.++.. ++ ...+..++..+...+++.+|.+.|.+.... ....|...+..++. +..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 8888777776665411 11 124455666677777887777777666432 11122222221111 111
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhhCCC
Q 007878 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC--GSIQDAEIAFNKMPE 275 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 275 (586)
-.+....-..+.........-++...+..++.+|... .+++.+.+.|.....
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 1111111122222222222234566677777777653 346666666665544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.23 E-value=7.4 Score=28.92 Aligned_cols=87 Identities=8% Similarity=-0.080 Sum_probs=60.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007878 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
..-++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+...-||..+|-++-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667766666665542 33333333456778999999999999999999999988765 36788888888777777
Q ss_pred HCCCCCCHhHHH
Q 007878 205 REGVEPKDFMIS 216 (586)
Q Consensus 205 ~~g~~p~~~t~~ 216 (586)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 45444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.89 E-value=6.9 Score=29.02 Aligned_cols=87 Identities=8% Similarity=-0.105 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007878 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
..-++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+...-||..+|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345666666666665542 33333333456778999999999999999999999988765 47888888888887887
Q ss_pred HCCCCCCHhHHH
Q 007878 205 REGVEPKDFMIS 216 (586)
Q Consensus 205 ~~g~~p~~~t~~ 216 (586)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 45444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.74 E-value=20 Score=34.71 Aligned_cols=58 Identities=3% Similarity=-0.081 Sum_probs=31.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007878 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
-+...|...|++.+|..++..+.+...-..| .++|..-+++|...+++.++...+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455566666666666666665543221111 344555556666666666666665544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.40 E-value=21 Score=33.22 Aligned_cols=153 Identities=9% Similarity=-0.039 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHhCCCC-ChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHH----HH
Q 007878 26 PVTGKQLHALALKSGQIH-DVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDA----FI 100 (586)
Q Consensus 26 ~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~ 100 (586)
++...+-++.-++.|--- -...|.++..-|.+.+++++|+.++.. -...+.+.|+...|-++ .+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 334444444444444211 123567778888888999999888654 12345667887776665 55
Q ss_pred HHHHCCCCCChhhHHHHHHHHhcCCChH-HHHHHHHHHH----HhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007878 101 NLRRTGGEPDLITFCAFLNACSDCSLLQ-LGRQLHGFLV----RSGF--DGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173 (586)
Q Consensus 101 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 173 (586)
...+.++++|..+...++..+.....-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|+.-|=.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788889888888887776543211 1233333443 3331 2366778888888888888888888765222
Q ss_pred CCChhhHHHHHHHHHH
Q 007878 174 DKNDVSWCSMLVVYVQ 189 (586)
Q Consensus 174 ~~~~~~~~~li~~~~~ 189 (586)
..|...+..++.-+..
T Consensus 162 ~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 2234445444443333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.94 E-value=8.9 Score=28.49 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 35666666666666553 22222233445678999999999999999999999988755 467888888888877766
Q ss_pred ccCCCCCCHHHHH
Q 007878 307 MRCEAVPNYVTLV 319 (586)
Q Consensus 307 ~~~g~~pd~~t~~ 319 (586)
.| .|....|.
T Consensus 98 --sg-~p~~q~Fa 107 (116)
T 2p58_C 98 --SQ-DPRIQTFV 107 (116)
T ss_dssp --CC-CHHHHHHH
T ss_pred --CC-CHHHHHHH
Confidence 44 45555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.67 E-value=6.7 Score=32.48 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
-+..+|.+.+++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 34455555666666666666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.78 E-value=25 Score=39.71 Aligned_cols=164 Identities=4% Similarity=-0.146 Sum_probs=90.6
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 007878 48 GCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 127 (586)
...++..+.+.+..+-|..+....+. +..+--.+..++...|++++|.+.|.+.- .|+.++.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhh
Confidence 34566667777888888777666554 33332334466778899999999997752 2232221110 000
Q ss_pred HHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhc----CCCCCh----hhHHHHHHHHHHcCChHHHH
Q 007878 128 QLGRQLHGFLVRSGF--DGNVSVCNGLVDFYGKCNEVGLAKVVFDG----IIDKND----VSWCSMLVVYVQNYEEENGC 197 (586)
Q Consensus 128 ~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A~ 197 (586)
.. ...+..... ..-..-|..++..+-+.+.++.+.++-.. ....+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 011111110 11123355666666666666655544322 122221 25788888889999999998
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007878 198 QMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 198 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
..+..+.....+ ...+..++..++..+..+
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 888887765443 334555666566555443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.67 E-value=6.2 Score=29.26 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=62.6
Q ss_pred CCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHH
Q 007878 24 HIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLR 103 (586)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 103 (586)
...++|.-+-+++...+- ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456888888888887653 33333333456778999999999999999999999988754 46787777777777776
Q ss_pred HCCCCCChhhHH
Q 007878 104 RTGGEPDLITFC 115 (586)
Q Consensus 104 ~~g~~p~~~t~~ 115 (586)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 655 34444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=84.63 E-value=50 Score=35.96 Aligned_cols=249 Identities=10% Similarity=-0.086 Sum_probs=128.4
Q ss_pred HHHhcCChHHHHHHHhcCCC----CChh--hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC---Hh--HHHHHHHH
Q 007878 155 FYGKCNEVGLAKVVFDGIID----KNDV--SWCSMLVVYVQNYEEENGCQMFLTARREGV--EPK---DF--MISSVLSA 221 (586)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~--t~~~ll~~ 221 (586)
+....|+.+++..+++.-.. .+.. .-..+.-|.+..|..++++.++.......- .-+ .. .-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34567788888888877654 1222 223344566777777788887777654321 001 11 11222222
Q ss_pred HhcccC-cHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeH--HHHHHHHHHhcCCHH
Q 007878 222 CARIAG-LELGRSVHAVAVKACVEGNI--FVGSALVDMYGKCGSIQDAEIAFNKMPE-RNLVC--WNAIIGGYAHQGHAD 295 (586)
Q Consensus 222 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~--~~~li~~~~~~g~~~ 295 (586)
.+-.|. -+++...+..++...-. .. ...-+|...|.-.|+-+....++..+.+ .+... .-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222332 23455555555443211 11 1122334445566777776766665432 22222 223333455678988
Q ss_pred HHHHHHHHhhhccCCCCCCH-HHHH---HHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007878 296 MALSSFEEMTSMRCEAVPNY-VTLV---CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~-~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 371 (586)
.+..+.+.+.. . .|. .-|. ++..+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.
T Consensus 542 ~~~~li~~L~~--~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 542 LADDLITKMLA--S---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGHHHHHHHHH--C---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHh--C---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888876 2 232 3333 3456788899987777788888652 2223333333333444467766666
Q ss_pred HHHHhCCCCCCHHHHH--HHHHHHHHcCCH-HHHHHHHHHHhc
Q 007878 372 EIIKEMPMRPTISVWG--ALLNACRVYGKP-ELGRIAADNLFK 411 (586)
Q Consensus 372 ~~~~~m~~~p~~~~~~--~ll~~~~~~~~~-~~a~~~~~~~~~ 411 (586)
++++.+....|..+-. ++.-+....|+. ..+...+..+..
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7766552222333333 333333333333 456666666643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=84.19 E-value=16 Score=29.80 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHH
Q 007878 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS 251 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (586)
++.++|.++|+.+.+.+-+- ...+......=.+.|++..|++++...+..+++|....-.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 57777777777776542222 3333333333356788899999998888888776544333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.15 E-value=6.9 Score=29.20 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007878 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 294 ~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
.-+..+-++.+.. ..+.|++....+.+.||-+.+++..|.++|+.++.+. .+...+|..+++-
T Consensus 26 ~~e~rrglN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 4466666777766 7788999999999999999999999999999987653 3345567777643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.55 E-value=7.8 Score=28.95 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007878 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455566666667788888888888888888888888888888776542 233445665553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.11 E-value=34 Score=32.14 Aligned_cols=131 Identities=13% Similarity=0.041 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHh
Q 007878 47 VGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAF----INLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
.|.++..-|.+.+++++|+.++-. -...+.+.|+...|-++- +.+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 556677778889999999987643 123466678777666654 55667788999888888888777
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHH
Q 007878 123 DCSLLQ-LGRQLHGFLV----RSG--FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYV 188 (586)
Q Consensus 123 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 188 (586)
....-+ .=..+.+.++ +.| ..-|......+...|.+.+++.+|+.-|=.-.++++..+..|+.-+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 665321 1223333333 233 22356677777778888888888877763212222244544443333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.62 E-value=14 Score=39.18 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=45.9
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007878 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
.|...|+++.|..+-.+.+...+. +-.+|..|...|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 355678999999999999887654 78899999999999999999999999886
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.50 E-value=5.5 Score=38.79 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hcCCCCChH
Q 007878 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTL----KYGIKPGAE 352 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 352 (586)
++..+...|++++|+..+..+.. . -+-+...+..++.++...|+..+|++.|+...+ +.|+.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--E-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--H-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 45555666777777766666655 1 123566666777777777777777776665433 235555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.10 E-value=37 Score=31.89 Aligned_cols=168 Identities=12% Similarity=0.038 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHhHHHHHHHHHh
Q 007878 148 VCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMF----LTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
+|.++..-|.+.+++++|.+++-. -...+.+.|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778889999999887643 234456677776655544 45566788899888888888777
Q ss_pred cccCcHH-HHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHH
Q 007878 224 RIAGLEL-GRSVHAVAV----KAC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 224 ~~~~~~~-a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 296 (586)
....-+- =..+...++ +.| ..-|+.....+...|.+.+++.+|+..|-.-.++....+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 6554221 123333333 333 345778888999999999999999998853222333566555544443332111
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007878 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
+|...-..++ -|...+++..|..+|+...+
T Consensus 186 ----------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ----------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 35557788888887766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 586 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 12/190 (6%)
Query: 253 LVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRC 309
L ++ G I A F K L + + D A++++ S+
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 310 EAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVD 368
+ L CV G ++ + Y ++ ++P + Y + + L G V
Sbjct: 235 NHAVVHGNLACVYY---EQGLIDLAID-TYRRAIE--LQPHFPDAYCNLANALKEKGSVA 288
Query: 369 RAYEIIKE--MPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426
A + L N R G E ++ P + H L+++
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 427 FAATGRWEEA 436
G+ +EA
Sbjct: 349 LQQQGKLQEA 358
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 586 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.87 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.55 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.89 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.84 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.17 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.14 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.64 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.53 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.98 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.84 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.65 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.49 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.59 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.29 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.7e-21 Score=189.71 Aligned_cols=367 Identities=11% Similarity=0.027 Sum_probs=240.0
Q ss_pred HhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 007878 56 SKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQ 132 (586)
Q Consensus 56 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 132 (586)
.+.|++++|.+.|+++.+ | ++.+|..+...|.+.|++++|+..|++..+..+. +..++..+...+...|++++|..
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccccc
Confidence 344444444444444321 2 2334444444444455555555555544442211 23344444445555555555555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 007878 133 LHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI---IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE 209 (586)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 209 (586)
.+..+.+.. +.+..............+....+....... .......+..........+....+...+.+..... +
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-c
Confidence 555554443 222222333333333333333333222221 22233344444555556666666666666655432 2
Q ss_pred CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHH
Q 007878 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIG 286 (586)
Q Consensus 210 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 286 (586)
-+...+..+...+...|+.+.|...+...++..+. +...+..+...|...|++++|...|+...+ .+...|..+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHH
Confidence 23455566666677777788888877777776544 566777788888888888888888877553 45567777888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007878 287 GYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365 (586)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 365 (586)
.+.+.|++++|+..|++..+ +.|+ ..++..+...+...|++++|...++..... .+.+...+..+...+.+.|
T Consensus 246 ~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCC
Confidence 88899999999999999887 2354 677888889999999999999999988653 3556778888899999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007878 366 LVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 366 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
++++|++.|++. ...| +..+|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999986 5556 466788889999999999999999999999999999999999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.5e-20 Score=180.17 Aligned_cols=353 Identities=14% Similarity=0.097 Sum_probs=292.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007878 83 ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEV 162 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 162 (586)
...+.+.|++++|++.|+++.+..+. +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45567889999999999999875322 56678888889999999999999999999885 45678899999999999999
Q ss_pred HHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHH
Q 007878 163 GLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAV 239 (586)
Q Consensus 163 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (586)
++|...+..... .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999987743 344455556666667777777777666665544 3344444555556667778888888888777
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH
Q 007878 240 KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316 (586)
Q Consensus 240 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~ 316 (586)
...+. +...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+++... .. ..+..
T Consensus 163 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~ 238 (388)
T d1w3ba_ 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LS-PNHAV 238 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HC-TTCHH
T ss_pred ccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHH--Hh-hhHHH
Confidence 76654 667788889999999999999999987653 4567889999999999999999999999987 32 34567
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNAC 393 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 393 (586)
.+..+...+.+.|++++|+..|+.+.+. .|+ ...+..+...+...|++++|.+.++.. ..+.+...+..+...+
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 7888899999999999999999998753 454 778899999999999999999999887 3345778889999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2e-13 Score=130.89 Aligned_cols=240 Identities=13% Similarity=-0.001 Sum_probs=170.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007878 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
.....+.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+.++++..+. +...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 45666788888888888888887753 224556777777777888888888888877776654 5666666777777777
Q ss_pred CHHHHHHHHhhCCC--CCeeH-HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007878 262 SIQDAEIAFNKMPE--RNLVC-WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 262 ~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 338 (586)
++++|.+.++.... |+... +....... ...+.......+..+...+...+|...|
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA----------------------GGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-------------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh----------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 77777777766432 11110 00000000 0000001111122334456677888888
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 339 YSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 339 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
....+...-.++...+..+...+...|++++|+..+++. ...| +..+|..+...+...|++++|+..++++++++|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 877654333445778888889999999999999999986 3334 57789999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 417 SGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.++..++.+|.+.|++++|.+.|++..+
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.3e-13 Score=126.93 Aligned_cols=264 Identities=9% Similarity=-0.013 Sum_probs=190.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccC
Q 007878 151 GLVDFYGKCNEVGLAKVVFDGIID--K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG 227 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 227 (586)
.....+.+.|++++|...|++..+ | +..+|..+...|...|++++|+..|.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456678999999999999998843 3 56789999999999999999999999988753 2355677788889999999
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 007878 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSM 307 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (586)
+++|.+.+..+....+.... ......... ...+.......+..+...+...+|.+.|.+....
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAH-LVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGG-GCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHH-HHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999998876543211 100000000 0011111111223344556778888888887763
Q ss_pred cCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHH
Q 007878 308 RCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TIS 384 (586)
Q Consensus 308 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~ 384 (586)
..-.++...+..+...+...|++++|+..|+..... .| +...|..+...|.+.|++++|.+.|++. ...| +..
T Consensus 166 -~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 166 -DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp -STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 112345677888888999999999999999998754 34 4778889999999999999999999987 4444 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH-----------HHHHHHHhhcCChHHH
Q 007878 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH-----------VLLSNMFAATGRWEEA 436 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~a 436 (586)
+|..+..+|...|++++|+..+++++++.|++...+ ..+..++...|+.+.+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999999999999999888765433 3345555555655544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=9.7e-09 Score=98.39 Aligned_cols=261 Identities=12% Similarity=-0.000 Sum_probs=168.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC-----CchhHHHHHHH
Q 007878 185 VVYVQNYEEENGCQMFLTARREGVEPK----DFMISSVLSACARIAGLELGRSVHAVAVKACVE-----GNIFVGSALVD 255 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~ 255 (586)
..+...|++++|++++++..+.....+ ...+..+..++...|++++|...+....+.... .....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344556666666666666554321111 123444445556666666666666655542211 01234455566
Q ss_pred HHHhcCCHHHHHHHHhhCCC-------CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC--CCCCHHHHHHHH
Q 007878 256 MYGKCGSIQDAEIAFNKMPE-------RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE--AVPNYVTLVCVL 322 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g--~~pd~~t~~~ll 322 (586)
.|...|++..|...+..... +. ...+..+...+...|+++.+...+......... ......++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 67777777777776665321 11 124455666778889999998888887662111 112234555666
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHH
Q 007878 323 SACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-----TISVWGALLN 391 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~ 391 (586)
..+...+...++...+........-..+ ...+..+...+...|++++|...+++. ...| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6777888888888887766543222211 234566677888999999999999887 2221 2456677888
Q ss_pred HHHHcCCHHHHHHHHHHHhcc------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 392 ACRVYGKPELGRIAADNLFKL------DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++...|++++|...++++... .|....++..++.+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999988753 355566888999999999999999999998765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=3.3e-08 Score=94.59 Aligned_cols=263 Identities=10% Similarity=-0.025 Sum_probs=130.2
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHH
Q 007878 120 ACSDCSLLQLGRQLHGFLVRSGFDGN----VSVCNGLVDFYGKCNEVGLAKVVFDGIID-----KN----DVSWCSMLVV 186 (586)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 186 (586)
.+...|++++|.+++++.++.....+ ...++.+...|...|++++|...|++... ++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34566677777777766665421111 12444555556666666666665554321 11 1123333444
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCH
Q 007878 187 YVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG---NIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 263 (586)
+...|++..|...+.+..... ...+... ....+..+...|...|++
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------------------------------HhcccchhhHHHHHHHHHHHHHHHhcch
Confidence 444555555555444432210 0000000 112333444555555665
Q ss_pred HHHHHHHhhCCC--------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCH
Q 007878 264 QDAEIAFNKMPE--------RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAV 331 (586)
Q Consensus 264 ~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~ 331 (586)
+.|...+..... ....++..+...+...|+..++...+.+........... ...+..+...+...|++
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence 555555544321 112233334444555566666665555443311111111 12334445556666777
Q ss_pred HHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007878 332 EKGMKIFYSMTLKYGIKP--GAEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPT-ISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~ 401 (586)
++|...+........-.+ ....+..+...+...|++++|...+++. +..|+ ..++..+...+...|++++
T Consensus 230 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 309 (366)
T d1hz4a_ 230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 309 (366)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH
Confidence 777777766543211111 1334455666777777777777776654 22232 3456666677788888888
Q ss_pred HHHHHHHHhccC
Q 007878 402 GRIAADNLFKLD 413 (586)
Q Consensus 402 a~~~~~~~~~~~ 413 (586)
|...+++++++.
T Consensus 310 A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 310 AQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=1.1e-09 Score=104.77 Aligned_cols=231 Identities=7% Similarity=-0.117 Sum_probs=165.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc--CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007878 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA--GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (586)
...|++++|+.+++...+.. +-+...+.....++...+ +++++...+..+++..+......+......+...|..++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 34556778888888887643 224445555555555554 478888888888887655333333445577778899999
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007878 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|...++...+ .+..+|+.+...+.+.|++++|...+++..+ +.|+.. .+...+...+..+++...+....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN----VLLKEL---ELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH----HHHHHH---HHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH----hHHHHH---HHHHHHHHhcchhHHHHHHHHHH
Confidence 9999998875 4567888888899999999888777666555 223322 23334455667777887777765
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 343 LKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 343 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
.. -+++...+..+...+...|+.++|.+.+.+. ...| +..+|..+...+...|+.++|...++++++++|.+...|
T Consensus 236 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 LG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred Hh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 42 2344556667777888889999999999887 4445 456778888889999999999999999999999888888
Q ss_pred HHHHHHHh
Q 007878 421 VLLSNMFA 428 (586)
Q Consensus 421 ~~l~~~~~ 428 (586)
..|...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=5.2e-08 Score=91.61 Aligned_cols=185 Identities=10% Similarity=0.038 Sum_probs=119.9
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C-eeHHHHHHHHHHhcCCHHHHHHHHH
Q 007878 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-N-LVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
..+++..+++..++..++.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466777777777654455666777777777778888888888877643 2 2 2357777777777788888888888
Q ss_pred HhhhccCCCCCCHHHHHHHHH-HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----
Q 007878 303 EMTSMRCEAVPNYVTLVCVLS-ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM---- 377 (586)
Q Consensus 303 ~m~~~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 377 (586)
++.+ .. +.+...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++.
T Consensus 159 ~al~--~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 159 KARE--DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHT--ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHH--hC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 7776 32 112333333222 233456777788888777654 2334566777777777777777777777765
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007878 378 PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 378 ~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
+..|+ ...|...+.--..+|+.+.+..+.+++.+..|..
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 23332 3466666666667777777777777776666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=5.6e-09 Score=95.64 Aligned_cols=221 Identities=9% Similarity=-0.082 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHCCC-CC--CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007878 193 EENGCQMFLTARREGV-EP--KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIA 269 (586)
Q Consensus 193 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 269 (586)
.+.|+.-+++...... .+ ...++..+..++.+.|++++|...|...++..+. +..+++.+..+|.+.|++++|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544321 11 1124445556667777777777777777776654 677777788888888888888888
Q ss_pred HhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC
Q 007878 270 FNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG 346 (586)
Q Consensus 270 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 346 (586)
|++..+ .+..+|..+...|...|++++|.+.|++..+ .. +.+......+..++.+.+..+.+..+......
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 167 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--- 167 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh--hc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---
Confidence 877653 3455777788888888888888888888877 22 12344444444445555555555555544432
Q ss_pred CCCChHHHHHHHHHHHhcCC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 347 IKPGAEHYACVVDLLGRAGL----VDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 347 ~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
..++...++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|
T Consensus 168 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 168 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 122222222 2222222111 22222211111 11122 24567778888899999999999999999999876544
Q ss_pred H
Q 007878 421 V 421 (586)
Q Consensus 421 ~ 421 (586)
.
T Consensus 247 ~ 247 (259)
T d1xnfa_ 247 R 247 (259)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.7e-08 Score=95.17 Aligned_cols=195 Identities=11% Similarity=0.056 Sum_probs=102.7
Q ss_pred ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHH
Q 007878 225 IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG-SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSS 300 (586)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 300 (586)
.+..++|.+++..+++..+. +...|+.....+...| ++++|.+.++...+ .+..+|+.+...+.+.|++++|++.
T Consensus 56 ~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 56 DERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp TCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence 33444444444444444333 3444444444444443 25555555554432 3445555555555666666666666
Q ss_pred HHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCC------hHHHHH
Q 007878 301 FEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGL------VDRAYE 372 (586)
Q Consensus 301 ~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~ 372 (586)
++++.+ +.| +...|..+...+.+.|++++|+..++.+.+. .| +...|+.+...+.+.+. +++|++
T Consensus 135 ~~kal~----~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 135 IADILN----QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp HHHHHH----HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred Hhhhhh----hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence 666655 123 3555666666666666666666666666542 33 24455555444444443 456666
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc--hhHHHHHHHHh
Q 007878 373 IIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS--GNHVLLSNMFA 428 (586)
Q Consensus 373 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~ 428 (586)
.+.+. ...| +...|..+...+. ....+++...++.+.++.|... ..+..++..|.
T Consensus 208 ~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 208 YTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 66554 3334 4566666555443 3445677777777777776533 33445555554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=6.3e-08 Score=91.20 Aligned_cols=204 Identities=9% Similarity=0.025 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007878 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
.++.+...+.+.+.+++|+++++++.+. .|+. ..|.....++...| ++++|...+..+++..+. +..+|+.+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 3444455555666666666666666653 3433 33444444555444 356666666666666554 55666666666
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccC---
Q 007878 257 YGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAG--- 329 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g--- 329 (586)
+.+.|++++|.+.|+++.+ .+..+|+.+...+.+.|++++|++.|+++++ . .| +...|+.+...+.+.+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--E--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--H--CCccHHHHHHHHHHHHHccccc
Confidence 6666666666666666543 4556666666666666777777777777666 2 23 3445554444433333
Q ss_pred ---CHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 007878 330 ---AVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPTISVWGALLNAC 393 (586)
Q Consensus 330 ---~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 393 (586)
.+++|+..+..+.+. .| +...|..+...+...| .+++.+.++.. +...+...+..++..+
T Consensus 198 ~~~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 256666666666543 33 3455555544444333 34444444433 2223444555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=4.1e-09 Score=96.54 Aligned_cols=210 Identities=11% Similarity=-0.020 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHH
Q 007878 229 ELGRSVHAVAVKACVEG---NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
+.+..-+.++....... ...++..+...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|++.|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 44444455555432211 234677788999999999999999998763 567899999999999999999999999
Q ss_pred HhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 007878 303 EMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PM 379 (586)
Q Consensus 303 ~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 379 (586)
+..+ +.|+ ..++..+..++...|++++|...|+...+. .| +......+...+.+.+..+.+..+.... ..
T Consensus 96 ~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 96 SVLE----LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHH----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHH----HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9998 3354 667888999999999999999999999764 34 3444444445555666555554444433 11
Q ss_pred CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 380 RPTISVWGALLNACR----VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 380 ~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.++...+.. +..+. ..+..+.+...+.......|....++..++..|...|++++|.+.|++..+.
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 169 DKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 222222221 11111 1122333333333334445666678888999999999999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=1e-09 Score=105.07 Aligned_cols=245 Identities=9% Similarity=-0.100 Sum_probs=178.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhHH-HH---HHHH-------HhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007878 189 QNYEEENGCQMFLTARREGVEPKDFMI-SS---VLSA-------CARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMY 257 (586)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~---ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 257 (586)
..+..++|++++++..+. .|+..+. +. ++.. +...|.++++..+++.+.+..++ +...+..+...+
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHH
Confidence 334457888888887763 4665432 21 2222 22345578889999999888765 667777777777
Q ss_pred HhcC--CHHHHHHHHhhCCC---CCeeHHHHHH-HHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCC
Q 007878 258 GKCG--SIQDAEIAFNKMPE---RNLVCWNAII-GGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGA 330 (586)
Q Consensus 258 ~~~g--~~~~A~~~~~~m~~---~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~ 330 (586)
...+ ++++|...++++.+ ++...|...+ ..+...|..++|+..+++... . .| +...|..+...+...|+
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~--~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--R--NFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--T--TCCCHHHHHHHHHHHHHHSC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--c--CCCCHHHHHHHHHHHHHhcC
Confidence 7766 48999999998753 4556665444 567778999999999999988 3 34 57788888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007878 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADN 408 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 408 (586)
+++|...+...... .|+ ...+...+...+..+++...+... ...++...+..+...+...++.++|...+.+
T Consensus 194 ~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 194 QPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88887766655432 222 122334455667777777777665 2223445566677778888999999999999
Q ss_pred HhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 409 LFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+.+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998773
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=1.6e-07 Score=88.14 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 007878 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (586)
..|...+..+...|++++|..+|+++...........|...+..+.+.|+.+.|++++..+++.
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~ 163 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3444444444444444444444444443221111223344444444444444444444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-06 Score=75.75 Aligned_cols=140 Identities=8% Similarity=-0.096 Sum_probs=96.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHH
Q 007878 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVE 332 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~ 332 (586)
...+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++.++ . .| +...|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--l--dp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--R--DKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--H--hhhhhhhHHHHHHHHHhhccHH
Confidence 44567788888888888888888888888888888888888888888888887 2 24 3677788888888888888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007878 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPT-ISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+|+..|+..... .+++... .+...| +..+++ ..++..+..++...|++++|.+.++++.+
T Consensus 88 ~A~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 88 LAIKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888877542 1111000 000000 001111 23455666778888888888888888888
Q ss_pred cCCCC
Q 007878 412 LDPND 416 (586)
Q Consensus 412 ~~p~~ 416 (586)
+.|..
T Consensus 149 ~~~~~ 153 (192)
T d1hh8a_ 149 MKSEP 153 (192)
T ss_dssp TCCSG
T ss_pred cCCCc
Confidence 87764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=5.4e-07 Score=78.36 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
.+......|.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3333344444444444444444443 1122 3444555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHH
Q 007878 431 GRWEEADLVRKEMK 444 (586)
Q Consensus 431 g~~~~a~~~~~~m~ 444 (586)
|++++|...+++..
T Consensus 86 ~~~~~A~~~~~~al 99 (201)
T d2c2la1 86 ESYDEAIANLQRAY 99 (201)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=1.9e-06 Score=79.80 Aligned_cols=244 Identities=11% Similarity=-0.023 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---
Q 007878 130 GRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE--- 206 (586)
Q Consensus 130 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 206 (586)
+.++++...+.+ .|....+..+.. ...+++++|.++|. .....|...|++++|++.|.+..+.
T Consensus 4 ~~~~l~~aek~~-~~~~~~~~~~~~--~~~~~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~ 69 (290)
T d1qqea_ 4 PVELLKRAEKKG-VPSSGFMKLFSG--SDSYKFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKK 69 (290)
T ss_dssp HHHHHHHHHHHS-SCCCTHHHHHSC--CSHHHHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CcchhHHHHhcC--CccccHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 455666666554 333322221110 11224566665543 4577788888888888888776542
Q ss_pred -CCCCC-HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHH
Q 007878 207 -GVEPK-DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAI 284 (586)
Q Consensus 207 -g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l 284 (586)
+-+++ ..+|..+..++.+.|++++|...+....+. +.+.|+...+ ..++..+
T Consensus 70 ~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~---------------~~~~~~~~~~-----------~~~~~~l 123 (290)
T d1qqea_ 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG-----------ANFKFEL 123 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH-----------HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH---------------hhhcccchhH-----------HHHHHHH
Confidence 11111 124445555555555555555554443321 1111111111 1223333
Q ss_pred HHHHHh-cCCHHHHHHHHHHhhhcc--CCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHH
Q 007878 285 IGGYAH-QGHADMALSSFEEMTSMR--CEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYA 355 (586)
Q Consensus 285 i~~~~~-~g~~~~A~~~~~~m~~~~--~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~ 355 (586)
...|.. .|++++|++.+++..+.. .+..+. ..++..+...+...|++++|...|+.+.....-.+. ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444432 466666666665554310 111111 234555666677777777777777666543111111 12233
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHHc--CCHHHHHHHHHHHhccC
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM-PMRPT------ISVWGALLNACRVY--GKPELGRIAADNLFKLD 413 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~ 413 (586)
..+..+...|+++.|...+++. ...|+ ......++.++... +.+++|+..|+++.+++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 3444555667777777777766 22221 12334455554432 33566666665555554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2e-06 Score=67.26 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=62.4
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH
Q 007878 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKP 399 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~ 399 (586)
...+...|++++|+..|...++. -+.+...|..+..+|.+.|++++|++.+++. .+. .+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34455666666666666666543 1223455666666666666666666666665 222 3556666666667777777
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 400 ELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
++|+..++++++++|+++..+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777766665555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.4e-06 Score=80.78 Aligned_cols=191 Identities=11% Similarity=-0.024 Sum_probs=126.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCC-CCCHHHHHH
Q 007878 253 LVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEA-VPNYVTLVC 320 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~-~pd~~t~~~ 320 (586)
....|...|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.. .+. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35667788888888888876543 12 3578888888999999999999988765511 110 011345566
Q ss_pred HHHHhh-ccCCHHHHHHHHHHhHHhc---CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCC---C----CH-HHH
Q 007878 321 VLSACS-RAGAVEKGMKIFYSMTLKY---GIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMR---P----TI-SVW 386 (586)
Q Consensus 321 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~---p----~~-~~~ 386 (586)
+...|. ..|++++|+..|+...+-. +..+. ..++..+...|...|++++|++.|++. ... + .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998875422 11121 456788899999999999999999986 111 1 11 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCch-----hHHHHHHHHhh--cCChHHHHHHHHHH
Q 007878 387 GALLNACRVYGKPELGRIAADNLFKLDPNDSG-----NHVLLSNMFAA--TGRWEEADLVRKEM 443 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 443 (586)
...+..+...++++.|...+++..+.+|.... ....++.++.. .+++++|...|+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555677889999999999999999875332 23445555544 35678888777543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=2e-06 Score=67.21 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=82.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 007878 357 VVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWE 434 (586)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 434 (586)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 356788999999999999997 3334 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 007878 435 EADLVRKEMKDV 446 (586)
Q Consensus 435 ~a~~~~~~m~~~ 446 (586)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=6e-06 Score=70.89 Aligned_cols=118 Identities=8% Similarity=-0.029 Sum_probs=81.8
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007878 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 402 (586)
+...|+++.|++.|..+ .+|+..+|..+...|...|++++|++.|++. .+.| +...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45566677777666544 1455566666677777777777777777665 3333 456677777777777777777
Q ss_pred HHHHHHHhccCCCC----------------chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 403 RIAADNLFKLDPND----------------SGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 403 ~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...|+++++..|.+ ..++..++.+|.+.|++++|.+.++...+..
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77777776654332 2456678889999999999999999887643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=9.6e-07 Score=76.70 Aligned_cols=111 Identities=7% Similarity=-0.135 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007878 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALL 390 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 390 (586)
|+...+......+.+.|++++|+..|..+... -+.+...|..+..+|.+.|++++|+..|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66667777778888888888888888877653 1334677788888888888888888888886 5556 467788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007878 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
.++...|++++|+..++++++++|++...+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 88888899999999998888887765444433333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.31 E-value=1.6e-06 Score=67.21 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 007878 357 VVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWE 434 (586)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 434 (586)
+...+.+.|++++|+..|++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..++..|...|+++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 455677888888888888887 3344 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007878 435 EADLVRKEM 443 (586)
Q Consensus 435 ~a~~~~~~m 443 (586)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=7e-06 Score=68.09 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=90.0
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 007878 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG 397 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 397 (586)
....|.+.|++++|+..|+.+.+. .| +...|..+...|...|++++|++.|++. ...| +..+|..+..++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345677888888888888888754 34 4777888888888999999999988887 4444 5578999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHH--hhcCChHHHHHH
Q 007878 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMF--AATGRWEEADLV 439 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 439 (586)
++++|...++++.+++|+++..+..+..+. ...+.++++...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988877766553 333445555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=9e-06 Score=68.20 Aligned_cols=85 Identities=13% Similarity=0.003 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA 429 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (586)
.+|+.+..+|.+.|++++|+..+++. .+.| ++.+|..+..++...|++++|+..++++++++|+++.+...+..+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888899999999999999887 4445 778899999999999999999999999999999999999888888766
Q ss_pred cCChHHH
Q 007878 430 TGRWEEA 436 (586)
Q Consensus 430 ~g~~~~a 436 (586)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5.7e-06 Score=68.67 Aligned_cols=91 Identities=13% Similarity=-0.015 Sum_probs=82.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.....|.+.|++++|+..|++. ...| +...|..+...+...|++++|...++++++++|.+..++..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456788999999999999998 3334 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 007878 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999874
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=7.3e-06 Score=64.20 Aligned_cols=106 Identities=14% Similarity=-0.006 Sum_probs=79.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 007878 319 VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV---DRAYEIIKEM-PMRPTI---SVWGALLN 391 (586)
Q Consensus 319 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 391 (586)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++. ++|+.+++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35667777888888888888888753 133467777888888775544 4688888886 444433 36778888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007878 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
+|...|++++|+..++++++++|++..+......+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999988766555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.3e-05 Score=64.58 Aligned_cols=111 Identities=7% Similarity=0.009 Sum_probs=79.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVY 396 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 396 (586)
.+......+.+.|++++|+..|..........+... ..-......+ -..+|+.+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~~~----~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQAL----RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhchh----HHHHHHHHHHHHHhh
Confidence 344445567777777777777776654322111100 0000000000 124677788889999
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 397 GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
|++++|+..++++++++|+++.++..++.+|...|++++|...|++..+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998774
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=0.0034 Score=57.73 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=122.3
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 007878 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
|+..--..+.+.|.+.|.++.|..++..+.. |..++..+.+.+++..|++++.+.. +..+|..+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 4444444566777788888888888887653 7888888888888888888876541 5567888888887
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHH
Q 007878 123 DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII---DKNDVSWCSMLVVYVQNYEEENGCQM 199 (586)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 199 (586)
+......+ .+.......+......++..|-..|.+++...+++... ..+...++.++..|++.+ .++-++.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 76655432 22223333455556678888888888888888888643 345667788888887754 3343333
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Q 007878 200 FLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLV 279 (586)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 279 (586)
++.. .-. .-...++..|-+.+-+ .-++-.|.+.|++++|..+.-.-. +++.
T Consensus 155 l~~~---s~~---y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~-~~~~ 205 (336)
T d1b89a_ 155 LELF---WSR---VNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP-TDAW 205 (336)
T ss_dssp HHHH---STT---SCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST-TTTC
T ss_pred HHhc---ccc---CCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc-hhhh
Confidence 3322 111 1223344455444333 335556667777777655543321 2222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007878 280 CWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
.....+..+.+.++.+...++.....+
T Consensus 206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 206 KEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 334445556666666555555554444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=7.7e-05 Score=61.02 Aligned_cols=109 Identities=12% Similarity=-0.057 Sum_probs=76.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP---GAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNAC 393 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 393 (586)
.+..-...+.+.|++++|+..|..+.......+ +...... ... ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~-----------------~~~----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK-----------------KKN----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH-----------------HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHh-----------------hhh----HHHHHHhhHHHHH
Confidence 444555667777777777777776654211111 1010000 000 0234677788888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=5.8e-05 Score=62.91 Aligned_cols=94 Identities=6% Similarity=-0.025 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 007878 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA 429 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (586)
..|+.+..+|.+.|++++|+..+++. .+. .+..+|..+..++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666778889999999999999887 333 4678899999999999999999999999999999999988888877766
Q ss_pred cCChH-HHHHHHHHHHh
Q 007878 430 TGRWE-EADLVRKEMKD 445 (586)
Q Consensus 430 ~g~~~-~a~~~~~~m~~ 445 (586)
.+... ...+++..|.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 65443 34555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=0.0014 Score=58.65 Aligned_cols=229 Identities=10% Similarity=-0.063 Sum_probs=127.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----ccCcHHHHHHHHHHHHhCCCCchhHHH
Q 007878 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR----IAGLELGRSVHAVAVKACVEGNIFVGS 251 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (586)
|+..+..+...+.+.+++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45566667777777788888888888777665 33333333333332 234455555555544443 112222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh----hc
Q 007878 252 ALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC----SR 327 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~----~~ 327 (586)
.+...+... .....+.+.|...++...+ .|. . .....+...+ ..
T Consensus 75 ~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~--~g~--~-~a~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 75 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACD--LKY--A-EGCASLGGIYHDGKVV 122 (265)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHH--TTC--H-HHHHHHHHHHHHCSSS
T ss_pred ccccccccc---------------------------cccchhhHHHHHHHhhhhh--hhh--h-hHHHhhcccccCCCcc
Confidence 222222110 0112345556666665555 331 1 1111111111 22
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR----AGLVDRAYEIIKEMPMRPTISVWGALLNACRV----YGKP 399 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~ 399 (586)
......+...+..... ..+...+..|...|.. ..+...+...++......+..+...|...+.. ..++
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 3345555555555432 2344555556655554 34555666666655323456666666555554 5689
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 007878 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAA----TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 448 (586)
+.|+..|+++.+.+ ++..+..|+.+|.. ..+.++|.+.|++..+.|.
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999999998876 45677888888875 3478899999999988774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=2.3e-05 Score=61.28 Aligned_cols=92 Identities=9% Similarity=-0.061 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCc--hhHHHHHHHH
Q 007878 355 ACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG---KPELGRIAADNLFKLDPNDS--GNHVLLSNMF 427 (586)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~ 427 (586)
..+++.+...+++++|.+.|++. ...| +..++..+..++.+.+ +.++|+.+++++++.+|.+. .++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999998 4444 6678888888887654 45579999999999887653 4788999999
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 007878 428 AATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 428 ~~~g~~~~a~~~~~~m~~~ 446 (586)
.+.|++++|.+.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999873
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=6.2e-05 Score=62.82 Aligned_cols=80 Identities=8% Similarity=-0.054 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007878 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...|..+..+|.+.|++++|+..+++. .+.| +..+|..+..++...|++++|+..++++++++|++..+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456677788888899999999988887 4444 56788888888999999999999999999999998888777766654
Q ss_pred hc
Q 007878 429 AT 430 (586)
Q Consensus 429 ~~ 430 (586)
+.
T Consensus 157 ~l 158 (169)
T d1ihga1 157 KI 158 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=0.0043 Score=57.04 Aligned_cols=283 Identities=10% Similarity=0.002 Sum_probs=166.6
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHH
Q 007878 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAV 87 (586)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 87 (586)
||..--..+..-|.+.|.++.|..++..+ .-|..++..|.+.++++.|..++.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 56666677888899999999999998754 246778888899999999999887654 5668988998888
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007878 88 LGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKV 167 (586)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 167 (586)
+.....-| .+.......+......++..|-..|..++...+++...... ..+...++.++..|++.+. ++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHH
Confidence 87765443 22233344566777889999999999999999988776432 5577789999999999764 34444
Q ss_pred HHhcCCCC-----------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHH
Q 007878 168 VFDGIIDK-----------NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 168 ~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 236 (586)
.+...... ....|..++-.|.+.|++++|+.+. ... .++.......+..+.+..+.+...++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 44432211 1223555666666666666665543 221 3344444555666677777776666666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH
Q 007878 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~ 316 (586)
...+.. | ...+.|+......-+..+..+.|++ .++..-....++.... .+ +..
T Consensus 229 ~yL~~~--p--~~i~~lL~~v~~~~d~~r~V~~~~k------------------~~~l~li~p~Le~v~~--~n---~~~ 281 (336)
T d1b89a_ 229 FYLEFK--P--LLLNDLLMVLSPRLDHTRAVNYFSK------------------VKQLPLVKPYLRSVQN--HN---NKS 281 (336)
T ss_dssp HHHHHC--G--GGHHHHHHHHGGGCCHHHHHHHHHH------------------TTCTTTTHHHHHHHHT--TC---CHH
T ss_pred HHHHcC--H--HHHHHHHHHhccCCCHHHHHHHHHh------------------cCCcHHHHHHHHHHHH--cC---hHH
Confidence 555532 2 2334455555555555555554443 3444444445544433 33 334
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHH
Q 007878 317 TLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
..+++...|...++++.-+...+.
T Consensus 282 vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhHHHHHHHHH
Confidence 566666666666666555544444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.86 E-value=0.00015 Score=59.20 Aligned_cols=126 Identities=8% Similarity=-0.040 Sum_probs=92.4
Q ss_pred eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007878 279 VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358 (586)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 358 (586)
..+......+.+.|++.+|+..|.+.... .|... ...-......... ....+|+.+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~----~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla 74 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHH
Confidence 45666777899999999999999998872 12110 0000000011111 1234777888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007878 359 DLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
.+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..|+++++++|++..+...+..+.
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8999999999999999987 4444 6789999999999999999999999999999999988776665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.84 E-value=0.00032 Score=58.14 Aligned_cols=63 Identities=11% Similarity=0.005 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.+|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|...|++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667788999999999999999999999999999999999999999999999999998864
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.82 E-value=0.0054 Score=54.58 Aligned_cols=96 Identities=14% Similarity=-0.004 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007878 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGIID-KNDVSWCSMLVVYVQ----NYEEENGCQMFLTARREGVEPKDFMISSVL 219 (586)
Q Consensus 145 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 219 (586)
|+..+..|...+.+.+++++|.+.|++..+ .|..++..|...|.. ..+...|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 345677788888899999999999998744 466677777777776 568888999888877765 223333333
Q ss_pred HHHh----cccCcHHHHHHHHHHHHhCC
Q 007878 220 SACA----RIAGLELGRSVHAVAVKACV 243 (586)
Q Consensus 220 ~~~~----~~~~~~~a~~~~~~~~~~~~ 243 (586)
..+. ...+.+.+...+....+.|.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh
Confidence 3332 24566778888887777664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00013 Score=60.76 Aligned_cols=65 Identities=8% Similarity=0.008 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|..+..++.+.|++++|+..+.++++++|+++.+|..++.+|...|++++|.+.|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567778888999999999999999999999999999999999999999999999999999873
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=5.8e-05 Score=59.63 Aligned_cols=92 Identities=8% Similarity=0.017 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch-------hHHHHH
Q 007878 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG-------NHVLLS 424 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 424 (586)
+..+...+.+.|++++|++.|++. ...| +..+|..+..+|...|++++|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344566777888888888888776 3333 5778888888999999999999999999998877654 455667
Q ss_pred HHHhhcCChHHHHHHHHHHHh
Q 007878 425 NMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999988754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=8.8e-05 Score=62.31 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=85.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007878 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 399 (586)
.........|++++|.+.|.....- .++...- .+...........-++. -....+..+...+...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~-----~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE---WRGPVLD-----DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG-----GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc-----cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 3445677889999999999888743 2221100 00000001111111111 1235678889999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCccCC
Q 007878 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD-----VGIKKGA 452 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 452 (586)
++|+..++++++.+|.+...|..++.+|...|++++|.+.|+++.+ .|+.|.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999854 5776653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.72 E-value=0.00011 Score=56.36 Aligned_cols=88 Identities=9% Similarity=-0.110 Sum_probs=52.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007878 82 YISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
+...+.+.|++++|+..|++.....+. +...|..+..++.+.+++++|...++.+++.. +.+..++..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 344555666666666666666654322 45556666666666666666666666666654 3345556666666666666
Q ss_pred hHHHHHHHhc
Q 007878 162 VGLAKVVFDG 171 (586)
Q Consensus 162 ~~~A~~~~~~ 171 (586)
+++|.+.|++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=6e-06 Score=82.63 Aligned_cols=219 Identities=9% Similarity=-0.052 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007878 195 NGCQMFLTARREGVEPKDF-MISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 195 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 273 (586)
+|.+.|++..+ ++||.. .+..+..++...++++++ +++++...+. ....++.....+ +. .+..+.+.++..
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw-~~-~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLW-NH-AFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHH-HH-HTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHH-HH-HHHHHHHHHHHh
Confidence 67788887765 345432 333344445555555543 5555544321 011111111111 11 122334444432
Q ss_pred CC----CCeeHHHHHHHHH--HhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC
Q 007878 274 PE----RNLVCWNAIIGGY--AHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG 346 (586)
Q Consensus 274 ~~----~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 346 (586)
.+ ++..-......++ ...+.++.|+..+.+..+ +.| +...+..+...+.+.|+.++|...+......
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~----l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 149 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN----VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY-- 149 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHH--
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--
Confidence 21 2222222222222 123445555554444333 333 3455666667777777777777776655421
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007878 347 IKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 347 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.| ...+..+.+.+...|++++|...|++. .+.|+ ...|+.|...+...|+..+|...+.+++..+|+.+.++..|.
T Consensus 150 -~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~ 227 (497)
T d1ya0a1 150 -IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp -HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred -CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 11 345667777788888888888888776 44443 467778888888888888888888888888877777777777
Q ss_pred HHHhh
Q 007878 425 NMFAA 429 (586)
Q Consensus 425 ~~~~~ 429 (586)
..+.+
T Consensus 228 ~~~~~ 232 (497)
T d1ya0a1 228 KALSK 232 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00061 Score=53.41 Aligned_cols=91 Identities=11% Similarity=0.041 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHH
Q 007878 283 AIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACV 357 (586)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 357 (586)
.+...|.+.|++++|+..|.+.++ .. +.+...+..+..+|.+.|++++|+..+..+++-..-.+. ..+|..+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~--~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKE--LD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344555566666666666666655 21 123455555666666666666666666655432100111 1234444
Q ss_pred HHHHHhcCChHHHHHHHHh
Q 007878 358 VDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~ 376 (586)
...+...+++++|++.|++
T Consensus 86 g~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4444455555555555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=4.3e-05 Score=76.22 Aligned_cols=107 Identities=11% Similarity=-0.056 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC-eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhc
Q 007878 250 GSALVDMYGKCGSIQDAEIAFNKMPERN-LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSR 327 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~ 327 (586)
+..+...+.+.|+.++|...+....+++ ..++..+...+...|++++|...|++..+ +.|+ ..+|+.+...+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~----l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSNGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTBSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCchHHHHHHHHHHHH
Confidence 3344444444444444444433322211 12333444444455555555555555544 2233 3455555555555
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007878 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLG 362 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 362 (586)
.|+..+|...|.+... --+|-...+..|...+.
T Consensus 199 ~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALS 231 (497)
T ss_dssp TTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHH
Confidence 5555555555544432 11233444444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.36 E-value=0.00044 Score=56.46 Aligned_cols=62 Identities=15% Similarity=-0.048 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-------C----CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 384 SVWGALLNACRVYGKPELGRIAADNLFKLDP-------N----DSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+|+.+..++...|++++|...+++.+++.| + ...++..++.+|...|++++|...|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778888888888877777776432 2 123567889999999999999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.35 E-value=0.00015 Score=58.47 Aligned_cols=126 Identities=12% Similarity=0.076 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhcc----------CCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 007878 288 YAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRA----------GAVEKGMKIFYSMTLKYGIKPG-AEHYA 355 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 355 (586)
|-+.+.+++|++.|+...+ +.|+ ...+..+..+|... +.+++|+..|+.+.+- .|+ ...|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~----~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~ 79 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK----SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVW 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh----hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHh
Confidence 4455667777777777777 2343 55566666555533 3335555555555432 333 34444
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007878 356 CVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
.+..+|...|++. ++... ..++++.|...|+++++++|++...+..|... ..
T Consensus 80 ~lG~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~k 131 (145)
T d1zu2a1 80 CIGNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AK 131 (145)
T ss_dssp HHHHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HT
T ss_pred hHHHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HH
Confidence 4444444333210 11111 11246889999999999999988777666554 45
Q ss_pred HHHHHHHHHhCCC
Q 007878 436 ADLVRKEMKDVGI 448 (586)
Q Consensus 436 a~~~~~~m~~~g~ 448 (586)
|.+++.+..+.|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 6667776666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0011 Score=48.76 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007878 355 ACVVDLLGRAGLVDRAYEIIKEM----P----MRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34555566666666666666554 1 1122 4678889999999999999999999999999999887776643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.14 E-value=0.00071 Score=60.44 Aligned_cols=123 Identities=12% Similarity=-0.026 Sum_probs=70.5
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCC
Q 007878 289 AHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGL 366 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 366 (586)
.+.|++++|+..+++.++ . .| |...+..+...++..|++++|...|+...+. .|+ ...+..+..++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~--~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--A--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--T--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--H--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccc
Confidence 346777778877777776 2 24 4567777777777778888877777777643 454 3344444444444444
Q ss_pred hHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007878 367 VDRAYEIIKEM--PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 367 ~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
.+++..-.... ...|+ ...+......+...|+.++|...++++.+..|..+.
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 44333222211 11222 222333344466667777777777777777666543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.0024 Score=53.08 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=57.0
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hcCCCCChH
Q 007878 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTL----KYGIKPGAE 352 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 352 (586)
...+..+...+...|++++|+..++++.. +.| +...|..++.+|...|+.++|++.|+.+.+ ..|+.|+..
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~----~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF----EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 34677788888889999999999998887 224 578888899999999999999988887643 358888765
Q ss_pred H
Q 007878 353 H 353 (586)
Q Consensus 353 ~ 353 (586)
+
T Consensus 143 l 143 (179)
T d2ff4a2 143 L 143 (179)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.06 E-value=0.0024 Score=51.82 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007878 353 HYACVVDLLGRAGLVDRAYEIIKEM--------PMRPT-----ISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
.|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..+|...|++++|+..|++++++.|.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4445555555555555555544443 11122 235667788899999999999999999887543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.03 E-value=0.00033 Score=56.39 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC-----------hHHHHHHHHHHHh
Q 007878 397 GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR-----------WEEADLVRKEMKD 445 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 445 (586)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 356789999999999999999999999999987654 5778888888775
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.81 E-value=0.00063 Score=60.82 Aligned_cols=120 Identities=12% Similarity=0.137 Sum_probs=83.8
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007878 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a 402 (586)
..+.|++++|+..+++.++. -+-+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 34679999999999999864 2445789999999999999999999999998 55565 34444444444433333332
Q ss_pred HHHHHHHhcc-CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 403 RIAADNLFKL-DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 403 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.......... .|++...+...+..+...|+.++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2211111112 3444455566778888999999999999998774
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0061 Score=44.40 Aligned_cols=64 Identities=11% Similarity=-0.026 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007878 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPND-------SGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
...+-.+...+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445567888999999999999999999875432 356888999999999999999999999873
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.53 E-value=0.092 Score=39.06 Aligned_cols=141 Identities=11% Similarity=0.053 Sum_probs=105.1
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007878 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
+...|..++..++..+... + .+..-||.++.-....-+-+-..+.++.+-+-+.+. .++++
T Consensus 12 ~ildG~ve~Gveii~k~~~--s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nl 72 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK--S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNL 72 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH--H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCT
T ss_pred HHHhhhHHhHHHHHHHHcc--c---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcH
Confidence 4557888899999888877 2 356677777777777777777777777775443333 34555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007878 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.....-+-.+. .+..-+...+....++|+-+.-..+.+.+.+.+..++....-++++|.+.|...++.+++.+.-++|
T Consensus 73 k~vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 73 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 55555554443 2344566677888899999998899999888777778899999999999999999999999999998
Q ss_pred Cc
Q 007878 448 IK 449 (586)
Q Consensus 448 ~~ 449 (586)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 74
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.9 Score=43.06 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=31.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 007878 151 GLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 207 (586)
..+..+.+.+++......+..-+ .+...-.....+....|+.++|...+...-..|
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 33455666677766665554322 233333345566667777777777666655443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.03 E-value=0.79 Score=33.95 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC
Q 007878 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (586)
...+.-+..++++|+-++-.++++.+.+.+ +|++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344556777888888888888888876644 677777888888888888888888888888887765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.98 E-value=0.5 Score=35.28 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhccCCCCc-hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007878 400 ELGRIAADNLFKLDPNDS-GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|++.++.+.+
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455555555555555432 3444555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.89 E-value=1.2 Score=33.78 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007878 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYG 157 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 157 (586)
++++|+..|++..+.|- ......+. .....+.++|.+.++...+.| +...+..|..+|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhh
Confidence 55677777777666552 22222222 223355666777776666655 3334444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.84 E-value=0.68 Score=35.21 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 007878 397 GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA----TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 448 (586)
.+.++|...+++..+.+. +.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g~--~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccCc--chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 356777777777776543 4556667777765 3577888888888777764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.65 E-value=5.4 Score=37.29 Aligned_cols=270 Identities=11% Similarity=-0.000 Sum_probs=137.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--ccCc
Q 007878 151 GLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR--IAGL 228 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~ 228 (586)
.-+......|+...|..+...+...........+....+ ...+.... .. ..++......+..+..+ ..+.
T Consensus 159 ~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~--~~~~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RT--TGATDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HH--SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hc--CCCChhhhHHHHHHHHHHhccCh
Confidence 334444555677777777766654443344444443322 22222211 11 12333333333344433 2456
Q ss_pred HHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007878 229 ELGRSVHAVAVKACVEGNIFVG---SALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
+.+..++............... ..+...+...+..+.|...+..... .+.....-.+......++...+...+..
T Consensus 231 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~ 310 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLAR 310 (450)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHh
Confidence 6677666666554322222111 1122222334555666665544332 2222222344445566788888888887
Q ss_pred hhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHH-HhCCCCCC
Q 007878 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII-KEMPMRPT 382 (586)
Q Consensus 304 m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~ 382 (586)
|.. . ..-...-.--+..++...|+.+.|...|..+.. .++ -|.-|... +.|..-. +- ...+..++
T Consensus 311 l~~--~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~~---~~~~~~~~~~~ 376 (450)
T d1qsaa1 311 LPM--E-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEYE---LKIDKAPQNVD 376 (450)
T ss_dssp SCT--T-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCCC---CCCCCCCSCCC
T ss_pred cCc--c-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCCC---CCcCCCCccHH
Confidence 754 2 112234444667788888888888888888742 233 34333211 1221100 00 00011111
Q ss_pred H-HH---HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007878 383 I-SV---WGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 383 ~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
. .. -..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|.....+..
T Consensus 377 ~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 1 11 0122345678899999999888776543 34566677888888999999887766653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.49 E-value=2.1 Score=31.78 Aligned_cols=72 Identities=13% Similarity=0.051 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007878 349 PGAEHYACVVDLLGRAG---LVDRAYEIIKEM-PMRP-TI-SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
|++.+--...-++.+.. +.++++.++++. ...| +. ..+.-|.-+|.+.|+++.|...++++++.+|++..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 33444444444455443 344566666665 2223 22 4666777788889999999999999999999876543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.59 E-value=2.9 Score=29.18 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007878 93 KNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 93 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
-++.+-++.+-...+.|++....+.|+||.+.+++..|.++++-+.... .++...|..++.
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 3555566666677788999999999999999999999999988776543 334455655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.29 E-value=3 Score=29.15 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007878 293 HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 293 ~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
+.-++.+-+..+.. ..+.|++....+.+.||-+.+++..|.++|+.++.+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~--~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 34466666777766 7788999999999999999999999999999987543 344557776654
|