Your job contains 1 sequence.
>007879
MDSGFIFEPPSDEEIEELQSEYEEDQGEEVDVEKPSKRAKQSPWDFAAYSESVSDEHFRR
RTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGA
SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA
LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE
TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP
KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV
LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH
VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS
LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKA
ENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKVILIIYINVWDDY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007879
(586 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 1943 9.4e-201 1
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 1177 5.8e-122 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 1139 5.2e-119 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 1096 4.2e-115 2
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 1072 1.8e-112 2
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 1072 1.3e-111 2
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 1071 1.6e-111 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 1081 2.1e-109 1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 1056 2.7e-109 2
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 1073 1.5e-108 1
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 1047 2.4e-108 2
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 1031 1.3e-107 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 1063 1.7e-107 1
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 991 3.6e-103 2
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 968 5.9e-101 2
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 983 5.0e-99 1
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 976 2.8e-98 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 915 8.1e-92 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 915 8.1e-92 1
GENEDB_PFALCIPARUM|PFL2475w - symbol:PFL2475w "DEAD/DEAH ... 431 1.9e-74 2
UNIPROTKB|Q8I4R9 - symbol:PFL2475w "DEAD/DEAH box helicas... 431 1.9e-74 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 694 2.1e-68 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 674 2.8e-66 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 659 1.1e-64 1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 657 1.8e-64 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 656 2.3e-64 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 656 2.3e-64 1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 653 4.7e-64 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 649 1.2e-63 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 646 2.6e-63 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 645 3.3e-63 1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 642 6.9e-63 1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 642 6.9e-63 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 641 8.8e-63 1
TAIR|locus:2032910 - symbol:RH36 "RNA helicase 36" specie... 616 3.9e-60 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 611 1.3e-59 1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 610 1.7e-59 1
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 587 4.2e-59 2
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 605 5.7e-59 1
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 605 5.7e-59 1
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 605 5.7e-59 1
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 605 5.7e-59 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 603 9.3e-59 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 603 9.3e-59 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 600 1.9e-58 1
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 599 2.5e-58 1
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 597 4.0e-58 1
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 595 6.6e-58 1
UNIPROTKB|I3LIB1 - symbol:LOC100625841 "Uncharacterized p... 595 6.6e-58 1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 595 6.6e-58 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 595 6.6e-58 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 595 6.6e-58 1
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 594 8.4e-58 1
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 591 1.7e-57 1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 591 1.7e-57 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 590 2.2e-57 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 590 2.2e-57 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 589 2.8e-57 1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 588 3.6e-57 1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 587 4.6e-57 1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 586 5.9e-57 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 586 5.9e-57 1
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 584 9.6e-57 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 584 9.6e-57 1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 584 9.6e-57 1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 584 9.6e-57 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 584 9.6e-57 1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 584 9.6e-57 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 584 9.6e-57 1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 584 9.6e-57 1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 584 9.6e-57 1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 584 9.6e-57 1
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 584 9.6e-57 1
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 582 1.6e-56 1
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica... 581 2.0e-56 1
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas... 581 2.0e-56 1
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 411 2.8e-56 2
UNIPROTKB|Q8EGU0 - symbol:SO_1501 "ATP-dependent RNA heli... 578 4.2e-56 1
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 578 4.2e-56 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 578 4.2e-56 1
TIGR_CMR|SO_1501 - symbol:SO_1501 "ATP-dependent RNA heli... 578 4.2e-56 1
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh... 577 5.3e-56 1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 576 6.8e-56 1
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 576 6.8e-56 1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 575 8.6e-56 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 574 1.1e-55 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 573 1.4e-55 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 572 1.8e-55 1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 569 3.7e-55 1
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 565 9.9e-55 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 563 1.6e-54 1
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 561 2.6e-54 1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 537 2.9e-54 2
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 537 2.9e-54 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 559 4.3e-54 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 559 4.3e-54 1
CGD|CAL0003464 - symbol:orf19.5991 species:5476 "Candida ... 393 1.0e-53 3
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote... 555 1.1e-53 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 550 3.8e-53 1
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 529 4.2e-53 2
WARNING: Descriptions of 809 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
Identities = 389/546 (71%), Positives = 443/546 (81%)
Query: 41 QSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDN----------DHSDSEF 90
QSPWDFA+YS SV +EH RR TTS+D KI+K++Q R VPI N D SD+E
Sbjct: 70 QSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQHRPVPISINEEEEEEEEEEDASDAET 129
Query: 91 DQHEDYKPEDED--DFSNAGDT-KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSK 147
D+ E+Y ED++ ++ T K FF+ DG SFHA++FMELNLSRPLLRACE LGY K
Sbjct: 130 DKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKK 189
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207
PTPIQAACIPLALTGRD+C SAITGSGKTAAFALPTLERLL+RPKR+ A RVLILTPTRE
Sbjct: 190 PTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRE 249
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSX 267
LAVQ+HSMI+ +AQFTDI+C L+VGGLS + QE LRSMPDIVVATPGRMIDHLRNSMS
Sbjct: 250 LAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSV 309
Query: 268 XXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
RLL+ GF+ EI ELVRLCPKRRQTMLFSAT+TE+V EL+KLSL KP
Sbjct: 310 DLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKP 369
Query: 328 LRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
LRLSADPSA+RP LT NQEAVLLSLC++TF SKVIIFSGTKQAAHRLK
Sbjct: 370 LRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLK 429
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
ILFGLA LKAAELHGNLTQAQRL++LELFRKQ VDFLIATDVAARGLDIIGVQTVINYAC
Sbjct: 430 ILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYAC 489
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWS 507
PR++ SYVHRVGRTARAGREGYAVTFVTD+DRSLLK IAK+ GSKLKSR++ EQSI KWS
Sbjct: 490 PREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKWS 549
Query: 508 KIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKL 567
+II++MEDQ +A++ LRKAEME KAENM+ H++EI+ARPKRTWF+TEKEKKL
Sbjct: 550 QIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPKRTWFMTEKEKKL 609
Query: 568 AVKADK 573
+A+K
Sbjct: 610 VAQAEK 615
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 1177 (419.4 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 238/493 (48%), Positives = 319/493 (64%)
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN----SFMELNLSRPLLRACEALGYS 146
D E +DED+ A K FFA AD N SF ++LSRP+LR ++G++
Sbjct: 219 DDQESESEQDEDE-EEAAKMKEFFA-ADEPKSDTNKGNASFQSMSLSRPILRGLTSVGFA 276
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206
KPTPIQ+ IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P RV+IL PTR
Sbjct: 277 KPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTR 336
Query: 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266
ELA+Q H++ K+A TDI+ CL VGGLS K+QE+ LR PD+++ATPGR IDH+RNS S
Sbjct: 337 ELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSAS 396
Query: 267 XXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK 326
R+LE GF+ E++E++ PK RQTMLFSAT+T VD LI++ L K
Sbjct: 397 FAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNK 456
Query: 327 PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRL 386
P+RL D K TLT + L+ LC +T +VIIF K+ AH
Sbjct: 457 PVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHA 516
Query: 387 KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446
+I+FGL L AELHG+++Q QR++++E FR V FL+ATD+A+RGLDI GV TVINY
Sbjct: 517 RIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYE 576
Query: 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSI 503
P+ L YVHRVGRTARAGR G A+T + DR ++KA K G+K+ SRI+
Sbjct: 577 APQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADA 636
Query: 504 TKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEK 563
W I+++ED+V A+++ +L +A+ME K ENMI ++++I ARPKRTWF TEK
Sbjct: 637 DSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRYEDDIKARPKRTWFETEK 696
Query: 564 EKKLAVKADKVIL 576
+KK A +A + L
Sbjct: 697 DKKAAREAGRAAL 709
Score = 43 (20.2 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 45 DFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDH-SDSEFDQHEDYKPEDEDD 103
+F E + +E ++ + I K Q+RS ND ++ E D H + DD
Sbjct: 25 EFVEEEEVIQEEAPPKKKSKT---IPKKKQKRSSKKASNDDDAEDEEDGHIEGVWGQNDD 81
Query: 104 FSNAGDTKSFFAPADG 119
A D+ F G
Sbjct: 82 DDGAMDSDFEFVTGAG 97
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 1139 (406.0 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
Identities = 234/495 (47%), Positives = 318/495 (64%)
Query: 85 HSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPA-----DGASFHAN-SFMELNLSRPLLR 138
H D E + D E E D K+FFAP D A+ A SF E NLSRP+LR
Sbjct: 253 HPDDEASE-PDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQEFNLSRPILR 311
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198
A+ ++ PTPIQ IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P R
Sbjct: 312 GLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSR 371
Query: 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 258
V IL PTRELAVQ +++ K+A +TDI C +VGG S + QE L+ PD+++ATPGR I
Sbjct: 372 VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFI 431
Query: 259 DHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318
DH+RNS S R+LE GF+ E++E++ PK RQTMLFSAT+T+ VD+
Sbjct: 432 DHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDK 491
Query: 319 LIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSG 378
LI++ L +P+RL D TL + LL LC + +T +VI+F
Sbjct: 492 LIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFR 551
Query: 379 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438
K+ AHR++I+FGL LKAAELHG+++Q QR++++E FR +V+FL+ATD+A+RGLDI G
Sbjct: 552 QKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKG 611
Query: 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKS 495
V+TVINY P+ YVHRVGRTARAGR G A T + DR ++KA K G+K+ S
Sbjct: 612 VETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKAQGAKIVS 671
Query: 496 RIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPK 555
R+V W+ + ME+++ A+L+ L +AEM+ TK EN+I H+ EI +RPK
Sbjct: 672 RVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENLIKHEAEIKSRPK 731
Query: 556 RTWFVTEKEKKLAVK 570
RTWF TE+EK++A K
Sbjct: 732 RTWFETEREKRVAKK 746
Score = 53 (23.7 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 60 RRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDD 103
++ +D I + ++R + + D+ ED K EDEDD
Sbjct: 137 KKAVDIDDIIERRREKREKK-AEKEKKKKHLDECEDEKDEDEDD 179
Score = 49 (22.3 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 83 NDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAP 116
ND SD E D+ E ED+DD + A D+ S P
Sbjct: 222 NDESDDE-DEEEG---EDDDDDA-ASDSDSVATP 250
Score = 40 (19.1 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTK 111
SD E D+ ++ P+DED S + K
Sbjct: 21 SDDENDRFDE--PQDEDATSMSSSKK 44
Score = 37 (18.1 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 64 SVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGD 109
SVDF + L + + D D E ++ E+ + E+E + ++ D
Sbjct: 182 SVDFGDDELLAKDGFGM-GADGVDEEEEEEEEEEEEEETEGNDESD 226
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 1096 (390.9 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 223/441 (50%), Positives = 302/441 (68%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL+LSRPLL+A + LG+S+PTPIQA IPLAL G+DI SA TGSGKTAAF LP LE
Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RLL+R AIRVLIL PTRELA+Q S++E +AQF++I CL+VGGLS K QE LR
Sbjct: 251 RLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRK 310
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
PD+V+ATPGR+IDHL N+ RLL++GF EI+++V CP RQT
Sbjct: 311 SPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQT 370
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
MLFSATL ++V L KLSL +P+R+ D + STL ++ A+LLSLC
Sbjct: 371 MLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLC 430
Query: 366 SKTFTSK-VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ F IIF +K+ HRL+I+FGL+ LKAAELHGNL+Q QR ++L+ FR V++L
Sbjct: 431 TRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYL 490
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+A+DVA+RGLDIIGV+TVINY P ++ +Y+HRVGRTARAG +G + +F+TDNDR LLK
Sbjct: 491 LASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKD 550
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMI 544
I +A +K KSR V++ ++ W IE++ + + +I++ LRKAE KAE +I
Sbjct: 551 IVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKII 610
Query: 545 AHKEEIFARPKRTWFVTEKEK 565
++ + PK W+ T++E+
Sbjct: 611 SNADANVETPK-VWYKTKQEE 630
Score = 59 (25.8 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 64 SVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDD 103
SV K T + + + DND D E ++ E+ + E+ED+
Sbjct: 108 SVTTKTTNNNKSKKSNNNDNDDDDEEVNEEEEEEEEEEDN 147
Score = 53 (23.7 bits), Expect = 1.8e-114, Sum P(2) = 1.8e-114
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 41 QSPWDFAAYSESVSDEHFRRRT--TSVDFKIT-----KSLQ---QRSVPIVDNDHSDSEF 90
Q PWDFA E + + ++ TS++ KI K L+ +SV +++ S+
Sbjct: 62 QLPWDFAPTIEKMKQQTHKKTDGQTSLEDKINQRKTVKKLKADDDKSVTTKTTNNNKSKK 121
Query: 91 DQHEDYKPEDED 102
+ D +DE+
Sbjct: 122 SNNNDNDDDDEE 133
Score = 51 (23.0 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 59 RRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDED 102
+R++ DF +T + VD+D +D + D ED+ E+ D
Sbjct: 17 KRKSPENDFIMTIDIAGDD-DFVDDDENDDDEDLKEDFFFEESD 59
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 1072 (382.4 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 220/507 (43%), Positives = 323/507 (63%)
Query: 71 KSLQQRSVPIVDNDHSDSEF---DQH-----EDYKPEDEDDFSNAG-DTKSFFAPADGAS 121
+ L+++ V +++ S++++ D++ + K ++ G + FF D +
Sbjct: 125 EDLERKDVEASEDEESETDYSSADENILTKADTLKIKERKKKKKKGQEAGGFFE--DASQ 182
Query: 122 FHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
+ N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFA
Sbjct: 183 YDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFA 242
Query: 181 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
LP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF I CL VGGL K QE
Sbjct: 243 LPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQE 302
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 300
ALR+ PDI++ATPGR+IDHL N S R+L+ F ++ E++R+C
Sbjct: 303 AALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 362
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
RQTMLFSAT+T++V +L +SL P+R+ + + L ++EA+
Sbjct: 363 HHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 422
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ +
Sbjct: 423 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 482
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R
Sbjct: 483 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERK 542
Query: 481 LLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
+LK I K A + +K+RI+ + I K+ IE+ME V A+LQ ++K+E + A
Sbjct: 543 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTA 602
Query: 541 ENMIAH-KEEIFARPKRTWFVTEKEKK 566
+ ++ KE P+R+WF T++E+K
Sbjct: 603 QRLLEKGKEAPNPEPERSWFQTKEERK 629
Score = 58 (25.5 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 40 KQSPWDFA-AYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVD--NDHSDSEFDQHEDY 96
K+ +D + A ++ +S +R T++D KI K ++R + + S+ E + E
Sbjct: 60 KEGMYDGSWAMADVLSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEKEKEAKEGS 119
Query: 97 KPEDEDD 103
+PE+E+D
Sbjct: 120 EPEEEED 126
Score = 43 (20.2 bits), Expect = 7.1e-111, Sum P(2) = 7.1e-111
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 51 ESVSDEHFRRRTTSVDFKITKSLQQR-----SVPIVDNDHSDSEFDQHEDYKPEDEDDFS 105
E + +R+T + K KS +++ S P + D + + ED E E D+S
Sbjct: 88 EKIEKVRKKRKTEDKEAKSGKSEKEKEAKEGSEPEEEEDLERKDVEASED--EESETDYS 145
Query: 106 NAGD 109
+A +
Sbjct: 146 SADE 149
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 1072 (382.4 bits), Expect = 1.3e-111, Sum P(2) = 1.3e-111
Identities = 218/492 (44%), Positives = 315/492 (64%)
Query: 82 DNDHSDSE---FDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN-SFMELNLSRPLL 137
+ D+S ++ + + K ++ +T FF D + + N SF ++NLSRPLL
Sbjct: 163 ETDYSSADENILTKADTLKVKERKKKKKGQETGGFFE--DASQYDENLSFQDMNLSRPLL 220
Query: 138 RACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI 197
+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LERL+Y+P++ P
Sbjct: 221 KAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQSPVT 280
Query: 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM 257
RVL+L PTREL +QVHS+ +++AQF +I CL VGGL K QE ALR+ PDI++ATPGR+
Sbjct: 281 RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 340
Query: 258 IDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317
IDHL N S R+L+ F ++ E++R+C RQTMLFSAT+T++V
Sbjct: 341 IDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVK 400
Query: 318 ELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFS 377
+L +SL P+R+ + + L ++EA++ +L ++TFT V++F+
Sbjct: 401 DLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFT 460
Query: 378 GTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437
TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L+ATDVAARGLDI
Sbjct: 461 QTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIE 520
Query: 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497
GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +R +LK I K A + +K+RI
Sbjct: 521 GVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARI 580
Query: 498 VAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAH---KEEIFARP 554
+ + I K+ IE+ME V A+LQ L+++E + A+ ++ KE P
Sbjct: 581 LPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINTAKRLLEREKGKEASNHEP 640
Query: 555 KRTWFVTEKEKK 566
+R+WF T++E+K
Sbjct: 641 ERSWFQTKEERK 652
Score = 50 (22.7 bits), Expect = 1.3e-111, Sum P(2) = 1.3e-111
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 40 KQSPWDFA-AYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVD--NDHSD-------SE 89
K+ +D + A ++ +S +R T++D KI K ++R + + S+ SE
Sbjct: 83 KEGAYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEEKEAKEGSE 142
Query: 90 FDQHEDYKPEDEDDFSNAGDTKSFFAPAD 118
++ ED++ +DE+ + D+++ ++ AD
Sbjct: 143 LEEQEDHEGKDEEGPEDE-DSETDYSSAD 170
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 1071 (382.1 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 215/462 (46%), Positives = 304/462 (65%)
Query: 109 DTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+T FF D + + N SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC
Sbjct: 172 ETGGFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICA 229
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A TG+GKTAAFALP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF +I
Sbjct: 230 CAATGTGKTAAFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITT 289
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG 287
CL VGGL K QE ALR+ PDI++ATPGR+IDHL N S R+L+
Sbjct: 290 CLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY 349
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXX 347
F ++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + + L
Sbjct: 350 FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFV 409
Query: 348 XXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
++EA++ +L ++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q
Sbjct: 410 RIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQT 469
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR
Sbjct: 470 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRA 529
Query: 468 GYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXX 527
G +V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+LQ
Sbjct: 530 GRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEE 589
Query: 528 XILRKAEMEATKAENMIAH---KEEIFARPKRTWFVTEKEKK 566
L+++E + A+ ++ KE P+R+WF T++E+K
Sbjct: 590 KELQQSEAQINTAKRLLEREKGKEASNHEPERSWFQTKEERK 631
Score = 50 (22.7 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 21/89 (23%), Positives = 47/89 (52%)
Query: 40 KQSPWDFA-AYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVD--NDHSD-------SE 89
K+ +D + A ++ +S +R T++D KI K ++R + + S+ SE
Sbjct: 60 KEGAYDGSWAMADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKSEEKEAKEGSE 119
Query: 90 FDQHEDYKPEDEDDFSNAGDTKSFFAPAD 118
++ ED++ +DE+ + D+++ ++ AD
Sbjct: 120 LEEQEDHEGKDEEGPEDE-DSETDYSSAD 147
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 224/503 (44%), Positives = 318/503 (63%)
Query: 82 DNDHSDSEFDQHE-DYKPEDEDDFSNAGDTK---------------SFFAPADGASFHAN 125
+ND SE + E DY DE+ + A K FF D + + N
Sbjct: 160 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDEN 217
Query: 126 -SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP L
Sbjct: 218 LSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL 277
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
ERL+Y+P++ P RVL+L PTREL +QVHS+ ++AQF +I CL VGGL K QE ALR
Sbjct: 278 ERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
+ PDI++ATPGR+IDHL N S R+L+ F ++ E++R+C RQ
Sbjct: 338 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 397
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
TMLFSAT+T++V +L +SL P+R+ + + L ++EA++ +L
Sbjct: 398 TMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAAL 457
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+ + +D L
Sbjct: 458 LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 517
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V +++R +LK
Sbjct: 518 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKE 577
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMI 544
I K A + +K+RI+ + I K+ IE+ME V A+LQ ++++E + A+ ++
Sbjct: 578 IVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLL 637
Query: 545 AH-KEEIFARPKRTWFVTEKEKK 566
KE + P+R+WF T++E+K
Sbjct: 638 EKGKEAVVQEPERSWFQTKEERK 660
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 1056 (376.8 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 214/461 (46%), Positives = 302/461 (65%)
Query: 109 DTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+ +SFF D + + N SF ++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC
Sbjct: 165 EAESFFE--DASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICA 222
Query: 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227
A TG+GKTAAF LP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ +
Sbjct: 223 CAATGTGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTT 282
Query: 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG 287
CL VGGL K QE ALRS PDI++ATPGR+IDHL N S R+L+
Sbjct: 283 CLAVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEY 342
Query: 288 FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXX 347
F ++ E++RLC + RQTMLFSAT+TE+V +L +SL P R+ + + L
Sbjct: 343 FEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFI 402
Query: 348 XXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407
++EA++ +L ++TF V++F+ TK+ AHR+ IL GL L+ ELHGNL+QA
Sbjct: 403 RIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQA 462
Query: 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE 467
QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P YVHRVGRTARAGR
Sbjct: 463 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRA 522
Query: 468 GYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXX 527
G +V+ V + +R +LK I K A + +K+RI+ + I K+ + IE +E V A+L
Sbjct: 523 GRSVSLVGEEERKMLKEIVKAAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREE 582
Query: 528 XILRKAEMEATKAENMIAH-KEEIFARP-KRTWFVTEKEKK 566
++++E + KA+ + K+E + +R+WF T +E+K
Sbjct: 583 REMQQSEAQINKAKKQLEEGKQEAATKGVERSWFQTREERK 623
Score = 44 (20.5 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 82 DNDHSDSEFDQHEDY-KPEDEDDFSNAG-DTKSFFAPAD 118
+ + + SE + ED+ + E+ED+ S D ++ F AD
Sbjct: 110 ETEDNQSEKRECEDFGREEEEDNESQYSLDDETIFTKAD 148
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 224/483 (46%), Positives = 307/483 (63%)
Query: 99 EDEDDFSNAGDTKSFFAPADG-----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
+ E+D +FFA D + H+ SF +NLSRP+L+ LG+ PT IQ
Sbjct: 229 DSEEDEEEIAKKNAFFAEGDKEKSMMTTTHS-SFQSMNLSRPILKGLSNLGFEVPTQIQD 287
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
IPLAL G+DI G+A+TGSGKTAAF +P LERLLYRPK++P RVLIL PTRELA+Q H
Sbjct: 288 KTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCH 347
Query: 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXX 273
S+ KIA FTDI CL +GGLS K+QE LR PDIV+ATPGR IDH+RNS
Sbjct: 348 SVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIE 407
Query: 274 XXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333
R+LE GF+ E++E+++ CPK RQTMLFSAT+T+ VD+LI+LSL +P+R+ D
Sbjct: 408 IMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVD 467
Query: 334 PSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA 393
LT + A+L+ LC + F + IIF +K AH+++++FGL
Sbjct: 468 NKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLL 527
Query: 394 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTS 453
+L A E+HG+L+Q QR+ ALE FR ++L+ATDVA+RG+DI G++ VINY P
Sbjct: 528 SLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEV 587
Query: 454 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS---KLKSRIVAEQSITKWSKII 510
Y+HRVGRTARAGR G A+T + DR +LK + K + + KL +R + + K+ K I
Sbjct: 588 YLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEI 647
Query: 511 EQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVK 570
E++E V +L L+ AE + K EN++ + +EI +RP RTWF +EK+K+ A K
Sbjct: 648 EELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGDEIRSRPARTWFQSEKDKQ-ASK 706
Query: 571 ADK 573
A +
Sbjct: 707 ASE 709
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 1047 (373.6 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 214/462 (46%), Positives = 302/462 (65%)
Query: 109 DTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICG 167
+ +SFF D + + N SF ++NLSRPLL+A ALG+ +PTPIQ ACIP+ L G+DIC
Sbjct: 165 EAESFFE--DASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICA 222
Query: 168 SAITGS-GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226
A TG+ GKTAAF LP LERL+Y+P++ P RVL+L PTREL +QVHS+ +++AQF+ +
Sbjct: 223 CAATGTVGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVT 282
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
CL VGGL K QE ALRS PDI++ATPGR+IDHL N S R+L+
Sbjct: 283 TCLAVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDE 342
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
F ++ E++RLC + RQTMLFSAT+TE+V +L +SL P R+ + + L
Sbjct: 343 YFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEF 402
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
++EA++ +L ++TF V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q
Sbjct: 403 IRIRPNREGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQ 462
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
AQRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P YVHRVGRTARAGR
Sbjct: 463 AQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGR 522
Query: 467 EGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXX 526
G +V+ V + +R +LK I K A + +K+RI+ + I K+ + IE +E V A+L
Sbjct: 523 AGRSVSLVGEEERKMLKEIVKAAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLERE 582
Query: 527 XXILRKAEMEATKAENMIAH-KEEIFARP-KRTWFVTEKEKK 566
++++E + KA+ + K+E + +R+WF T +E+K
Sbjct: 583 EREMQQSEAQINKAKKQLEEGKQEAATKGVERSWFQTREERK 624
Score = 44 (20.5 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 82 DNDHSDSEFDQHEDY-KPEDEDDFSNAG-DTKSFFAPAD 118
+ + + SE + ED+ + E+ED+ S D ++ F AD
Sbjct: 110 ETEDNQSEKRECEDFGREEEEDNESQYSLDDETIFTKAD 148
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 1031 (368.0 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 204/461 (44%), Positives = 299/461 (64%)
Query: 107 AGDTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDI 165
A T+ FF D + + N +F ++NLSRPLL+A +G+ +PTPIQ AC+P+ L G+DI
Sbjct: 184 ADTTEGFFE--DASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDI 241
Query: 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225
C A TG+GKTAAF LP LERL+Y+P+ RVL+L PTREL +QVH++ ++AQFT I
Sbjct: 242 CACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTI 301
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLE 285
CL VGGL K QE ALR+ PD+++ATPGR+IDHL N+ S R+L+
Sbjct: 302 STCLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLD 361
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXX 345
F ++ E++R+C +RQTMLFSAT++E+V +L +SL +P+R+ + + L
Sbjct: 362 EYFEEQMKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQE 421
Query: 346 XXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
++EA++ +L ++TF V++F+ TK+ AHR+ IL GL LK ELHGNL+
Sbjct: 422 FVRIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLS 481
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q QRLE+L F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAG
Sbjct: 482 QTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAG 541
Query: 466 REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXX 525
+ G +V+ V + +R +LK I K+A +K+R++ ++ I K+ +IE++E V A+L
Sbjct: 542 KVGRSVSLVGETERKMLKEIVKKAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEK 601
Query: 526 XXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 566
+ +E + + A+ + E+ P RTWF T +E+K
Sbjct: 602 EEKEMAHSEAQISSAQKRLTKSEDEKQLP-RTWFQTNEERK 641
Score = 53 (23.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 82 DNDHSDSEFDQHE---DYKPEDEDDFSNAGD 109
DND D++ D+ D +DED+FS+A +
Sbjct: 133 DNDADDNDADEVSGGGDDDDDDEDEFSSADE 163
Score = 51 (23.0 bits), Expect = 2.1e-107, Sum P(2) = 2.1e-107
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 60 RRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGD 109
R+ V+ K K +++ H D E ++ E+ E+E++ ++A D
Sbjct: 90 RKKRKVEEKSQKE-NKKTETSASKKHDDQEEEEEEEEDDEEEEEDNDADD 138
Score = 45 (20.9 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGD 109
+ + D E ++ D D D+ S GD
Sbjct: 122 EEEEDDEEEEEDNDADDNDADEVSGGGD 149
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 227/509 (44%), Positives = 318/509 (62%)
Query: 73 LQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDT-------KSFFAPADGASFH-A 124
L+ + P D S E D DY EDE+ + A DT K A G F A
Sbjct: 120 LKGQENPGEDEAGSKDE-DSETDYSSEDEEILTKA-DTLKVKEKKKKKKGQAAGGFFEDA 177
Query: 125 N------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178
+ SF ++NLSRPLL+A A+G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAA
Sbjct: 178 SEYDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAA 237
Query: 179 FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
FALP LERL+Y+P++ RVL+L PTREL +QVHS+ +++AQF I CL VGGL K
Sbjct: 238 FALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS 297
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 298
QE ALR+ PDI++ATPGR+IDHL N S R+L+ F ++ E++R+
Sbjct: 298 QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 357
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQE 358
C RQTMLFSAT+T++V +L +SL P+R+ + + L ++E
Sbjct: 358 CSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE 417
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
A++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QRLEAL F+
Sbjct: 418 AIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKD 477
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V+ V + +
Sbjct: 478 EQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEE 537
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEAT 538
R +LK I K A + +K+RI+ + I K+ IE++E V A+LQ ++++E +
Sbjct: 538 RKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQID 597
Query: 539 KAENMIAH-KEEIFARPKRTWFVTEKEKK 566
A+ ++A KE P+R+WF T++E+K
Sbjct: 598 TAQRLLAKGKETADQEPERSWFQTKEERK 626
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 991 (353.9 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 213/496 (42%), Positives = 303/496 (61%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACE 141
DN + + + K E+D + G+ K FA A+ SF ++NLSRPL+RA
Sbjct: 115 DNLRLREKKESKKKKKKAGEEDEEDEGE-KMQFADTVEANEQITSFYQMNLSRPLMRAIG 173
Query: 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI-RVL 200
LGY PTPIQA+ IP+AL GRDICG A TG+GKTAA+ LPTLERLLYRP AI RVL
Sbjct: 174 VLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVL 233
Query: 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260
+L PTREL QV+ + +++ QFT I L +GGL K QE LR PDIV+ATPGR+IDH
Sbjct: 234 VLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDH 293
Query: 261 LRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320
++N+ S R+L+ F+ ++ E++ C K RQTMLFSAT++E V +L
Sbjct: 294 IKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLA 353
Query: 321 KLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTK 380
+SL KP+++ + + + L ++E +L SL +TF ++F TK
Sbjct: 354 AVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTK 413
Query: 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440
+ AHRL IL GL ++A ELHGNLTQ QRLE+L+ F+++ +D LIATDVAARGLDI+GV+
Sbjct: 414 KQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVK 473
Query: 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500
TVIN+ P Y+HRVGRTARAGR G +V+ + +R ++K I K A S +K+RI+
Sbjct: 474 TVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPP 533
Query: 501 QSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFV 560
+ I K+ + +E ++ IL L K E + +K E + + +R WF
Sbjct: 534 EIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQ----TNERRGWFQ 589
Query: 561 TEKEKKLAVKADKVIL 576
T+++++ + D++ L
Sbjct: 590 TKQQRE--AEKDRLAL 603
Score = 51 (23.0 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 59 RRRTTSVDFKITKSLQQRS-VPIVDNDHSD-SEFDQHEDYKPED 100
R+ T D KI LQ+R V + SD SE D ED D
Sbjct: 72 RKARTKTDDKIAARLQKRGGAEAVAAEQSDGSEIDLSEDELKHD 115
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 968 (345.8 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 214/490 (43%), Positives = 299/490 (61%)
Query: 94 EDYKPEDEDDFSNAGDTKSFFAP---ADGASFHA-NSFMELNLSRPLLRACEALGYSKPT 149
+D + ++EDD A F+AP D A +F L+LSRP+L+ +LGY KP+
Sbjct: 198 KDDEIDEEDDSEEA--KADFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPS 255
Query: 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209
PIQ+A IP+AL G+DI A+TGSGKTAAF +P +ERLLY+P +I + RV++L PTRELA
Sbjct: 256 PIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELA 315
Query: 210 VQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXX 268
+QV + ++IA+F I L VGGL+ + QE L+S PDIV+ATPGR IDH+RNS S
Sbjct: 316 IQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFN 375
Query: 269 XXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328
R+LE GF E++E++ L P RQ +LFSAT+ + L+ LSL KP+
Sbjct: 376 VDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPV 435
Query: 329 RLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK---TFTSKVIIFSGTKQAAHR 385
R+ DP K + LT + A+L +L K T ++++F K+ AHR
Sbjct: 436 RIMIDPPKKAATKLTQEFVRIRKRDHL-KPALLFNLIRKLDPTGQKRIVVFVARKETAHR 494
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
L+I+ GL + ELHG+LTQ QRL+++ F+ V LI TD+A+RGLDI ++ VINY
Sbjct: 495 LRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINY 554
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAGS-------KLKSR 496
P+ Y+HRVGRTARAGREG +VTFV ++ DRS+++A K K R
Sbjct: 555 DMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGR 614
Query: 497 IVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKR 556
V I + +K++E M D + IL + +AEM+ K ENM+ HK+EI ARP+R
Sbjct: 615 NVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRR 674
Query: 557 TWFVTEKEKK 566
TWF +E +KK
Sbjct: 675 TWFQSESDKK 684
Score = 53 (23.7 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 44 WDFAAYSESVSD--EHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQH-EDYKPED 100
W+F A ES D E F ++ +D KI + R +V H DS+ ++ E K E
Sbjct: 87 WNFLAEGESNKDDAEAFVKKDVDLD-KIIR----RKGGLVKMAHIDSKQEEETEKEKVEK 141
Query: 101 EDD 103
E+D
Sbjct: 142 END 144
Score = 52 (23.4 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 51 ESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDD 103
E E + S D ++ P+ + D + SE ++ E+ K E+E++
Sbjct: 132 EETEKEKVEKENDSDDEELAMDGFGMGAPMNNGDENQSEEEEEEEEKEEEEEE 184
Score = 41 (19.5 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 60 RRTTSVDFKITKSLQQRSVPIVDNDHSDSE 89
++ +++DF T S + VPI+D+ SD E
Sbjct: 6 KKYSNLDFVPTISDSEDDVPILDS--SDDE 33
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 201/462 (43%), Positives = 287/462 (62%)
Query: 109 DTKSFF-APADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
+ + FF A DG S + SF ++NLSR +L+AC GYS PTPIQ ACIP+ALTG+D
Sbjct: 128 ENEDFFSALIDGKSLDTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKD 187
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
IC A TG+GKTAAF LP LER++YRPK RVL+L PTRELA+QV + K++ F
Sbjct: 188 ICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQ 247
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLL 284
+ CL GGL K QE ALRS PD+VVATPGR+IDHL NS S R+L
Sbjct: 248 LEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRML 307
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTX 344
E F +++EL+RLC + RQT+LFSAT+TE++DEL +SL KP+++ + + L
Sbjct: 308 EEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQ 367
Query: 345 XXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
++EA++ +L ++TF + I+F TK+ R++IL GL +K ++ +L
Sbjct: 368 EFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSL 427
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
TQ QR+E+L F+K +D L++TD+A+RGLDI GVQTVIN P+ + Y+HRVGRTARA
Sbjct: 428 TQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARA 487
Query: 465 GREGYAVTFVTDNDRSLLKAIAK-RAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQX 523
G+ G +++ V +++R LLK I A LK R+VA + + + + I+++E+ + I +
Sbjct: 488 GKAGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEE 547
Query: 524 XXXXXILRKAEMEATKAENMIAHKEEIFA-RPKRTWFVTEKE 564
LR AE K +N + E A +R W + E +
Sbjct: 548 DRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMKESQ 589
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 222/508 (43%), Positives = 308/508 (60%)
Query: 84 DHSDSEFDQHE-DYKPEDEDDFSNAGDTK---------------SFFAPADGASFHAN-S 126
D SE ++ E DY DE+ + A DT FF D + + N S
Sbjct: 155 DEEGSEGEESETDYSSADENILTKAVDTLRVKERKKKKKGQEAGGFFE--DASQYDENLS 212
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++NLSRPLL+A +G+ +PTPIQ ACIP+ L G+DIC A TG+GKTAAFALP LER
Sbjct: 213 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 272
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-----FTDIRCCLVVGGLSTKMQET 241
L+Y+P++ P RVL+L PTREL +QVHS+ +++AQ T I L GGL K QE
Sbjct: 273 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISG-LFAGGLDVKSQEA 331
Query: 242 ALRSM-PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 300
ALR+ PDI++ATPGR+IDHL N S R+L+ F ++ E++R+C
Sbjct: 332 ALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS 391
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
RQTMLFSAT+T++V +L +SL P+R+ + + L ++EA+
Sbjct: 392 LHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAI 451
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR-LEALELFRKQ 419
+ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELHGNL+Q QR LEAL F+ +
Sbjct: 452 VAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLEALWRFKDE 511
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRTARAGR G +V
Sbjct: 512 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSV-------- 563
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATK 539
SLLK I K A + +K+RI+ + I K+ IE+ME V A+LQ ++K+E +
Sbjct: 564 SLLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINT 623
Query: 540 AENMIAH-KEEIFARPKRTWFVTEKEKK 566
A+ ++ KE P+R+WF T++E+K
Sbjct: 624 AQRLLEKGKEAPNPEPERSWFQTKEERK 651
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 206/497 (41%), Positives = 299/497 (60%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACE 141
+ + + E + E + + +D + A F+ + H SF L LSRP+L+
Sbjct: 90 EEEEEEEEVEVPEVKEVVEPEDSAEA--IADFYEESSPQQTHT-SFQTLQLSRPVLKGIA 146
Query: 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201
L ++KPTPIQ+A IP+AL G+DI A TGSGKT A+ +P +ERLLY+P + +V+I
Sbjct: 147 ELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPST--STKVII 204
Query: 202 LTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260
LTPTRELA+QV+ +K++ + + L VGGL+ + QE L++ PDIV+ATPGR+IDH
Sbjct: 205 LTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDH 264
Query: 261 LRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDEL 319
+RNS S R+LE GF E+ E++ L PK +RQT+LFSAT+ + +L
Sbjct: 265 IRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDL 324
Query: 320 IKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGT 379
I+LSL KP+R+ DP S L + A+L L K +S+V++F
Sbjct: 325 IQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQL-KPALLYQLL-KGVSSRVVVFVAR 382
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K+ AHRL+I+ GL LK +ELHG LTQ QRL+ ++ F+ V LI TD+AARGLDI +
Sbjct: 383 KETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKI 442
Query: 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKLKSRI 497
+ VINY P+ Y+HRVGRTARAGR+G ++TFV ++ + +AI K A K ++
Sbjct: 443 ELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQE--RAIVKSAIVNGKGVAKT 500
Query: 498 VAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRT 557
V + + +K++E E + +L+ L +AEME TKA N+I H++EI +RPKRT
Sbjct: 501 VDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIKHEQEIHSRPKRT 560
Query: 558 WFVTEKEKKLAVKADKV 574
WF E ++L KV
Sbjct: 561 WFKGEVMEQLTKHGKKV 577
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 206/497 (41%), Positives = 299/497 (60%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACE 141
+ + + E + E + + +D + A F+ + H SF L LSRP+L+
Sbjct: 90 EEEEEEEEVEVPEVKEVVEPEDSAEA--IADFYEESSPQQTHT-SFQTLQLSRPVLKGIA 146
Query: 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201
L ++KPTPIQ+A IP+AL G+DI A TGSGKT A+ +P +ERLLY+P + +V+I
Sbjct: 147 ELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPST--STKVII 204
Query: 202 LTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260
LTPTRELA+QV+ +K++ + + L VGGL+ + QE L++ PDIV+ATPGR+IDH
Sbjct: 205 LTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDH 264
Query: 261 LRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDEL 319
+RNS S R+LE GF E+ E++ L PK +RQT+LFSAT+ + +L
Sbjct: 265 IRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDL 324
Query: 320 IKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGT 379
I+LSL KP+R+ DP S L + A+L L K +S+V++F
Sbjct: 325 IQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQL-KPALLYQLL-KGVSSRVVVFVAR 382
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K+ AHRL+I+ GL LK +ELHG LTQ QRL+ ++ F+ V LI TD+AARGLDI +
Sbjct: 383 KETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKI 442
Query: 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKLKSRI 497
+ VINY P+ Y+HRVGRTARAGR+G ++TFV ++ + +AI K A K ++
Sbjct: 443 ELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQE--RAIVKSAIVNGKGVAKT 500
Query: 498 VAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRT 557
V + + +K++E E + +L+ L +AEME TKA N+I H++EI +RPKRT
Sbjct: 501 VDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIKHEQEIHSRPKRT 560
Query: 558 WFVTEKEKKLAVKADKV 574
WF E ++L KV
Sbjct: 561 WFKGEVMEQLTKHGKKV 577
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 431 (156.8 bits), Expect = 1.9e-74, Sum P(2) = 1.9e-74
Identities = 88/221 (39%), Positives = 135/221 (61%)
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
++A LL LC+ + + IIF TK+ H + +LF L L+ AELHG+++Q +R+E++ F
Sbjct: 373 RKASLLYLCNNIYKNHCIIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKF 432
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+K VDFL+ T++A+RG+DI V VINY P ++ YVHR+GRTAR G+EG A T
Sbjct: 433 KKAEVDFLLTTELASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQ 492
Query: 477 NDR----SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRK 532
++ ++K + K K+ R +AE ++ W KII++ + ++ I+Q +
Sbjct: 493 KEKIEVKKIVKGLKKSKNLKILKRTIAENNVLVWYKIIKENKQKLNDIIQQEKIDKEIEM 552
Query: 533 AEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
+ K +NMI K+EI +RP RTWF+TEKEKK K K
Sbjct: 553 SNKSIDKIKNMITFKDEIMSRPARTWFLTEKEKKNLKKESK 593
Score = 350 (128.3 bits), Expect = 1.9e-74, Sum P(2) = 1.9e-74
Identities = 98/301 (32%), Positives = 145/301 (48%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGAS--FHANS-FMELNLSRPLLRACEA 142
SD + D E+ K + S + + K+ P + N + +L +SRP L+
Sbjct: 45 SDRDEDDVEEMKEGTSERTSISRNNKNSENPKKNNNNIIDMNCLWSDLYISRPFLKVLYE 104
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY----RPKR----- 193
+S PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL + +R
Sbjct: 105 QKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKG 164
Query: 194 -IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVA 252
+ LIL PTREL++Q + +I + ++ I L GG+ K QE + DI V
Sbjct: 165 SYNITKALILLPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVC 224
Query: 253 TPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312
TPGR++D L NS S +LLELGF E +++ +C ++Q + FSATL
Sbjct: 225 TPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATL 284
Query: 313 TEDVDELIKLSLTKPL----RLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 368
T D+ +L SL P+ +S D + +T N V+ ++ S +
Sbjct: 285 TSDIKQLANFSLKNPVFIQSGMSFDKNVDGKNTYNAYNTCNTYNDNDNNNIVVNNIISNS 344
Query: 369 F 369
F
Sbjct: 345 F 345
Score = 41 (19.5 bits), Expect = 6.3e-42, Sum P(2) = 6.3e-42
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 52 SVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDH 85
++ F + + FKI+++L+Q V I+ +
Sbjct: 339 NIISNSFLKISNKASFKISENLKQEFVNIIQEKY 372
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 431 (156.8 bits), Expect = 1.9e-74, Sum P(2) = 1.9e-74
Identities = 88/221 (39%), Positives = 135/221 (61%)
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
++A LL LC+ + + IIF TK+ H + +LF L L+ AELHG+++Q +R+E++ F
Sbjct: 373 RKASLLYLCNNIYKNHCIIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKF 432
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+K VDFL+ T++A+RG+DI V VINY P ++ YVHR+GRTAR G+EG A T
Sbjct: 433 KKAEVDFLLTTELASRGIDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQ 492
Query: 477 NDR----SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRK 532
++ ++K + K K+ R +AE ++ W KII++ + ++ I+Q +
Sbjct: 493 KEKIEVKKIVKGLKKSKNLKILKRTIAENNVLVWYKIIKENKQKLNDIIQQEKIDKEIEM 552
Query: 533 AEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADK 573
+ K +NMI K+EI +RP RTWF+TEKEKK K K
Sbjct: 553 SNKSIDKIKNMITFKDEIMSRPARTWFLTEKEKKNLKKESK 593
Score = 350 (128.3 bits), Expect = 1.9e-74, Sum P(2) = 1.9e-74
Identities = 98/301 (32%), Positives = 145/301 (48%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGAS--FHANS-FMELNLSRPLLRACEA 142
SD + D E+ K + S + + K+ P + N + +L +SRP L+
Sbjct: 45 SDRDEDDVEEMKEGTSERTSISRNNKNSENPKKNNNNIIDMNCLWSDLYISRPFLKVLYE 104
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY----RPKR----- 193
+S PT IQ IPLAL G+ I ++ TGSGKT AF LP LERLL + +R
Sbjct: 105 QKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKG 164
Query: 194 -IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVA 252
+ LIL PTREL++Q + +I + ++ I L GG+ K QE + DI V
Sbjct: 165 SYNITKALILLPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKRNDIFVC 224
Query: 253 TPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312
TPGR++D L NS S +LLELGF E +++ +C ++Q + FSATL
Sbjct: 225 TPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKFKKQILFFSATL 284
Query: 313 TEDVDELIKLSLTKPL----RLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 368
T D+ +L SL P+ +S D + +T N V+ ++ S +
Sbjct: 285 TSDIKQLANFSLKNPVFIQSGMSFDKNVDGKNTYNAYNTCNTYNDNDNNNIVVNNIISNS 344
Query: 369 F 369
F
Sbjct: 345 F 345
Score = 41 (19.5 bits), Expect = 6.3e-42, Sum P(2) = 6.3e-42
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 52 SVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDH 85
++ F + + FKI+++L+Q V I+ +
Sbjct: 339 NIISNSFLKISNKASFKISENLKQEFVNIIQEKY 372
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 159/425 (37%), Positives = 222/425 (52%)
Query: 92 QHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPI 151
Q E + + S+ G K + A SF EL + L ACE +GY PTPI
Sbjct: 13 QPETNSDSEAESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPI 72
Query: 152 QAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211
Q+ IPLAL GRD+ G A TGSGKTAAFALP L+ L+ P+ + L+L PTRELA Q
Sbjct: 73 QSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFG---LVLAPTRELAYQ 129
Query: 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXX 271
+ E + +RC ++VGG+ Q AL P I+VATPGR++DHL N+
Sbjct: 130 ISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRN 189
Query: 272 XXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331
RLL++ F + +++R+ P+ R T LFSAT++ V+ L + SL+ P+R+S
Sbjct: 190 LKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVS 249
Query: 332 ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG 391
+ STL ++ L+ L ++ IIF+ T R+ +
Sbjct: 250 VSSKYQTVSTLQSSYICIPHK---HKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLR 306
Query: 392 LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451
A LHG L+Q+ RL AL FR + D L+ATDVAARGLDI V V N+ P D
Sbjct: 307 ALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDS 366
Query: 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIE 511
+Y+HRVGRTARAG+ G A++FVT D + I KL V + + S+ +
Sbjct: 367 KTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKKLPEYQVEKDEVMVMSERVA 426
Query: 512 QMEDQ 516
+ Q
Sbjct: 427 EASRQ 431
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 170/458 (37%), Positives = 236/458 (51%)
Query: 63 TSVDFKI-TKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDF-SNAGDTKSFFAPADGA 120
TS+ KI K+L+ + I SE D ED E + S + T S
Sbjct: 17 TSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNE 76
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA
Sbjct: 77 DESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFA 136
Query: 181 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
+P L RL + + A IL PTRELA Q+ + + +R +VGG++ Q
Sbjct: 137 IPILNRLWHDQEPYYAC---ILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQA 193
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 300
L P I++ATPGR++DHL N+ RLL++ F + ++++ P
Sbjct: 194 RDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 253
Query: 301 -KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEA 359
+ R T LFSAT+T +D+L + SLT P++ + + TL +
Sbjct: 254 TQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGL---KNT 310
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L+ L ++ +IIF+ TK A RL L L A LHG+L Q QR+ +L+LF+
Sbjct: 311 YLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAG 370
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
L+ATDVAARGLDI V V+NY P D SY+HRVGRTARAGR G +++ V+ D
Sbjct: 371 KRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDL 430
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517
L+ I + G KL V + I +++ +V
Sbjct: 431 ELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEV 468
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 147/423 (34%), Positives = 229/423 (54%)
Query: 83 NDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAP--ADGASFHANSFMELNLSRPLLRAC 140
N H+ ++ ++ + P D ++ + T+ H SF EL ++ L AC
Sbjct: 36 NTHTPADTEETNTHTPADTEETNTHTHTEETLIEETVTTGEIHT-SFKELGVTEVLCEAC 94
Query: 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200
+ LG+ KPT IQ IP+AL GRD+ G A TGSGKT AFA+P L+ LL +R+ L
Sbjct: 95 DQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQRL---HTL 151
Query: 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260
+LTPTRELA Q+ + + ++ ++VGG+ Q L P +V+ATPGR+IDH
Sbjct: 152 VLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGRLIDH 211
Query: 261 LRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320
+ N+ R+L + F +E+ +++++ P+ R+T LFSAT+T+ V +L
Sbjct: 212 MENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLFSATMTKKVQKLQ 271
Query: 321 KLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTK 380
+ +L P++ S S+K +T+ ++ L+S+ ++ + ++F GT
Sbjct: 272 RAALQDPVKCSV--SSKY-ATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTC 328
Query: 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440
R+ +L + A LHG ++Q +RL AL F+ + L+ATDVA+RGLDI V
Sbjct: 329 NNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVD 388
Query: 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500
VIN+ P Y+HRVGRTARAGR G ++TFVT D L + I G KL + E
Sbjct: 389 CVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKKLPAFPTQE 448
Query: 501 QSI 503
+ +
Sbjct: 449 EEV 451
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 148/384 (38%), Positives = 213/384 (55%)
Query: 111 KSFFAPADGASFH-ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSA 169
+S AP +F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A
Sbjct: 11 ESMEAPQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLA 70
Query: 170 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229
TGSGKT AFALP L LL P+R+ A L+LTPTRELA Q+ E + ++C +
Sbjct: 71 ETGSGKTGAFALPILNALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAV 127
Query: 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFS 289
+VGG+ + Q AL P IV+ATPGR+IDHL N+ R+L + F
Sbjct: 128 IVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFE 187
Query: 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXX 349
E+ +++++ P+ R+T LFSAT+T+ V +L + +L P++ + S+K T+
Sbjct: 188 TEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYY 244
Query: 350 XXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
++ L+ + ++ + +IF T R +L A LHG ++Q++R
Sbjct: 245 LFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKR 304
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
L +L F+ + L+ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G
Sbjct: 305 LGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGK 364
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKL 493
A+TFVT D L + I G KL
Sbjct: 365 AITFVTQYDVELFQRIEHLIGKKL 388
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 145/368 (39%), Positives = 209/368 (56%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ + S+K T+ ++ L+ +
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYIL 258
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +IF T R +L A LHG ++Q++RL +L F+ + L+
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 486 AKRAGSKL 493
G KL
Sbjct: 379 EHLIGKKL 386
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 145/368 (39%), Positives = 209/368 (56%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ + S+K T+ ++ L+ +
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYIL 258
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +IF T R +L A LHG ++Q++RL +L F+ + L+
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 486 AKRAGSKL 493
G KL
Sbjct: 379 EHLIGKKL 386
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 149/421 (35%), Positives = 220/421 (52%)
Query: 83 NDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEA 142
+D S S+ + ++ + + + + D SF EL +S+PL AC+
Sbjct: 2 SDSSSSDGEDNQKFLGNRKKNLTKKKVVTEEIEKDDEEDVKEKSFAELGVSQPLCDACQR 61
Query: 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202
LG+ KP+ IQ A +P AL G+D+ G A TGSGKT AFA+P L+ LL P+ A L+L
Sbjct: 62 LGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ---AFFCLVL 118
Query: 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
TPTRELA Q+ E + + ++VGG+ Q AL P I+VATPGR++DHL
Sbjct: 119 TPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLE 178
Query: 263 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
N+ R+L + F E+ +++++ P+ R+T LFSAT+T+ V +L +
Sbjct: 179 NTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERA 238
Query: 323 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 382
SL P R+S + R T+ +E L+ L ++ + I+F T
Sbjct: 239 SLRDPARVSV---SSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCAT 295
Query: 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
++ ++ ++A LHG ++Q +RL +L F+ + + L+ TDVAARGLDI V V
Sbjct: 296 TMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMV 355
Query: 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQS 502
INY P YVHRVGRTARAGR G A+T VT D + I G KL E
Sbjct: 356 INYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENE 415
Query: 503 I 503
+
Sbjct: 416 V 416
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 160/448 (35%), Positives = 237/448 (52%)
Query: 105 SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRD 164
+N GD+++ AP +F EL + L ACE LG+ PTPIQ IP+ L RD
Sbjct: 34 NNNGDSQNNEAP--------KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
Query: 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224
+ G A TGSGKTAAFALP ++ L P A+ +L PTRELA Q+ E I
Sbjct: 86 VIGLAQTGSGKTAAFALPVIQELWNNPSPFFAV---VLAPTRELAYQISEQFEAIGGSIG 142
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLL 284
+R ++VGG+ Q AL P ++V TPGR++DHL N+ RLL
Sbjct: 143 VRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLL 202
Query: 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTX 344
++ F I +++++ P R+T+LFSAT+T V++L + SL +P+R++ S+K ST+
Sbjct: 203 DMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAV--SSKF-STVDT 259
Query: 345 XXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
+++ L+ L ++ + +IIF+ T RL IL A LHG L
Sbjct: 260 LIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQL 319
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
+Q+ RL AL F+ L+ATDVAARGLDI V VINY P D +Y+HRVGRTARA
Sbjct: 320 SQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARA 379
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXX 524
GR G ++ VT D I G K++ + ++ + S+ + E Q AI+Q
Sbjct: 380 GRAGKSIALVTQYDLEPFLRIEATIGKKMQEYEIDKEGVFLLSERVG--EAQREAIIQMK 437
Query: 525 XXXXILR-KAEMEATKAENMIAHKEEIF 551
+ K ++ + + + +E+I+
Sbjct: 438 EIHDRRKSKGKLHTKRKRDDLDREEQIY 465
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 144/368 (39%), Positives = 208/368 (56%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 51 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 110
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 111 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 167
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T
Sbjct: 168 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 227
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ + S+K T+ ++ L+ +
Sbjct: 228 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYIL 284
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +IF T R +L A LHG ++Q++RL +L F+ + L+
Sbjct: 285 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 344
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 345 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 404
Query: 486 AKRAGSKL 493
G KL
Sbjct: 405 EHLIGKKL 412
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 143/368 (38%), Positives = 208/368 (56%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++ ++VGG+ + Q AL
Sbjct: 85 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK 141
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I++ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T
Sbjct: 142 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 201
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ + S+K T+ ++ L+ +
Sbjct: 202 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +IF T R +L A LHG ++Q++RL +L F+ + L+
Sbjct: 259 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR G A+TFVT D L + I
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 486 AKRAGSKL 493
G KL
Sbjct: 379 EHLIGKKL 386
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 148/415 (35%), Positives = 224/415 (53%)
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD--GASFHAN-----SFMELNLSRPLLR 138
SD E D + + EDED+ GD+++ + D G+ A ++ +L L+ L +
Sbjct: 15 SDEEEDLGSEEEQEDEDNNHKEGDSEAALSGEDDKGSEDDAAEEQKLTWKDLGLNEALCQ 74
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198
AC+ L + P+ IQ IP+AL G+D+ G A TGSGKT AFALP L LL P+R A
Sbjct: 75 ACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFA-- 132
Query: 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI 258
L+LTPTRELA Q+ E + I+CC+VVGG+ Q L P I++ATPGR++
Sbjct: 133 -LVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLV 191
Query: 259 DHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318
DHL N R+L + F E+ +++++ P+ R+T LFSAT+T+ V +
Sbjct: 192 DHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKK 251
Query: 319 LIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSG 378
L + SL P+++ + + T+ ++ L+ + ++ + +IF
Sbjct: 252 LQRASLKDPVKVEV---SNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCS 308
Query: 379 TKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438
T + ++ L A LHG ++Q +RL AL F+ ++ LI+TDVA+RGLDI
Sbjct: 309 TCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPH 368
Query: 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
V V+N+ P Y+HRVGRTARAGR G A+T V+ D L + I G +L
Sbjct: 369 VDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQL 423
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 143/380 (37%), Positives = 212/380 (55%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A SF +L ++ L AC+ LG+ PT IQ IP+AL GRDI G A TGSGKT AFALP
Sbjct: 24 ARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPI 83
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L+ LL P+R+ A L+LTPTRELA Q+ E + + ++VGG+ + Q AL
Sbjct: 84 LQALLDAPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLAL 140
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
P I++ATPGR++DHL N+ R+L + F E+ +++++ P+ R
Sbjct: 141 AKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDR 200
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
+T LFSAT+T+ V +L + +L P++ + S+K T+ +++ L+
Sbjct: 201 KTFLFSATMTKQVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYIFIPSKFKDSYLVY 257
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ ++ + +IF T R +L A LHG ++Q +RL +L F+ +
Sbjct: 258 ILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSI 317
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVA+RGLDI V VIN+ P Y+HRVGRTARAGR G ++TFVT D L +
Sbjct: 318 LLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQ 377
Query: 484 AIAKRAGSKLKSRIVAEQSI 503
I G KL + + E+ +
Sbjct: 378 RIEHLIGKKLPAFPMQEEEV 397
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 145/427 (33%), Positives = 225/427 (52%)
Query: 68 KITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD-GASFHANS 126
K+ + ++Q+++ E ++ ++ + S++ T S D A +
Sbjct: 66 KLAEKIKQQALQKQQKQQKQQE-QENANHNQTESSLSSSSSTTSSSITTIDPDAELKFKT 124
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ELNL LL + E++ ++KPTPIQ+ IP AL G+DI G A TGSGKTAAFA+P L+
Sbjct: 125 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 184
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L + + P L+L PTREL Q+ + + +R +VGG+ Q L
Sbjct: 185 LWHAQQ--PYF-ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 241
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 306
P ++VATPGR++DHL ++ RLL++ F + +++++ P +R T
Sbjct: 242 PHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTY 301
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCS 366
LFSAT+T +++L + SL P+R++ + L + +L+ L +
Sbjct: 302 LFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGY---KNTILIHLLN 358
Query: 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426
+ +I+F+ T A R +L + A LHG L+Q+QRL +L F+ + L+A
Sbjct: 359 EFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVA 418
Query: 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486
TDVAARGLDI V VINY P D +Y+HRVGRTARAGR G +++ +T D + I
Sbjct: 419 TDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIE 478
Query: 487 KRAGSKL 493
G KL
Sbjct: 479 SVLGKKL 485
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 151/414 (36%), Positives = 214/414 (51%)
Query: 102 DDFSNAGDTKSFFAPADGA-SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL 160
D N + F P + + A +F L L+ + C+ LG KPTP+Q C+P L
Sbjct: 34 DSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKIL 93
Query: 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220
GRD+ G A TGSGKTAAFALP L RL P + A L++TPTRELA Q+ + +
Sbjct: 94 AGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFA---LVVTPTRELAFQLAEQFKALG 150
Query: 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSXXXXXXXXXXXX 278
++RC ++VGG+ Q +L S P IV+ TPGR+ L N+ +
Sbjct: 151 SCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLD 210
Query: 279 XXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR 338
R+L++GF E+ + + PK RQT+LFSAT+T ++ L++ S K A K
Sbjct: 211 EADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKT 270
Query: 339 PSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398
TLT +LS +IF T + RL ++ ++
Sbjct: 271 VDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENI 330
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
+H +Q+ RL AL F+ V L+ATDVA+RGLDI V VINY PRD YVHRV
Sbjct: 331 AMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRV 390
Query: 459 GRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK---SRIVAEQ-SITKWSK 508
GRTARAGR G AV+ +T+ D L+ I + G K++ +++ + +TK SK
Sbjct: 391 GRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSK 444
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 143/385 (37%), Positives = 212/385 (55%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS PL +A GY P+PIQA IP LTG+D+ +A TG+GKTA F LP LE
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 186 RLLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L K + R L+LTPTRELA QV +E ++ +R +V GG+ Q LR
Sbjct: 62 LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLR 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D ++ + + R+L++GF +I +++ L P +RQ
Sbjct: 122 HGVDVLVATPGRLLDLVQQN-AVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
++FSAT ++++ EL K + P+ +S P R + T + A+L+ L
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTP---RNAAATTVKQWICPVDKTQKSALLIQL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ +V++FS TK A+RL A + AA +HGN +Q R +AL F+ V L
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATD+AARGLDI + V+N+ P YVHR+GRT RAG G AV+ V+ + LLK
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKI 509
I +L +R++ Q + +S +
Sbjct: 358 I-----ERLINRVLERQEVEGFSPV 377
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 137/350 (39%), Positives = 199/350 (56%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L ++ L AC+ LG++KPT IQ IPLAL GRDI G A TGSGKT AFALP L
Sbjct: 24 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 83
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+R+ A L+LTPTRELA Q+ E + ++C ++VGG+ + Q AL
Sbjct: 84 ALLETPQRLFA---LVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAK 140
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P IV+ATPGR+IDHL N+ R+L + F E+ +++++ P+ R+T
Sbjct: 141 KPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKT 200
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
LFSAT+T+ V +L + +L P++ + S+K T+ ++ L+ +
Sbjct: 201 FLFSATMTKKVQKLQRAALKNPVKCAV--SSKY-QTVEKLQQYYLFIPSKFKDTYLVYIL 257
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
++ + +IF T R +L A LHG ++Q++RL +L F+ + L+
Sbjct: 258 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 317
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR--EGYAVTF 473
ATDVA+RGLDI V V+N+ P Y+HRVGRTARAGR AVTF
Sbjct: 318 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRCWSQRAVTF 367
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 587 (211.7 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 147/385 (38%), Positives = 202/385 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L
Sbjct: 64 LSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRR 303
P +V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RR
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSATLT+ + EL L+ +P A + T+ ++A L+
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQAPVR---TVEQLDQRYLLVPEKVKDAYLVH 237
Query: 364 LCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L + F + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 238 LI-QNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKS 296
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 297 SIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSI 503
L+ AI ++ +L+ V E +
Sbjct: 357 IHLVHAIEEQIKKQLEELSVEEAKV 381
Score = 37 (18.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 508 KIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTE-KEKK 566
K +E++ + A +LQ ++R+ E E K+EI KR + E K+
Sbjct: 369 KQLEELSVEEAKVLQILTQVNVVRR-ECEIKLEAANFDEKKEI---NKRKQLILEGKDPD 424
Query: 567 LAVK 570
L K
Sbjct: 425 LEAK 428
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 153/386 (39%), Positives = 209/386 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L+ L+ +G S+PTP+QA+CIP L GRD G A TGSGKTAAF LP L+
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P I L+LTPTRELA Q+ + + ++ C+VVGGL Q L
Sbjct: 63 VLSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSR 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKR 302
P +V+ATPGR+ DHLR+S + RLLE G F+A++ ++ P R
Sbjct: 120 KPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSATLT+ ++EL L++ +P A A T+ ++A L+
Sbjct: 180 RQTLLFSATLTDTLNELKSLAMNRPFFWEA---ASEVRTVDELDQRYLLVPEAVKDAYLV 236
Query: 363 SLCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
L +TF + +IIF+ T + L ++ + + LH + Q QR AL F+
Sbjct: 237 HLI-QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFK 295
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT
Sbjct: 296 SSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY 355
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQSI 503
D L+ AI + KL+ V E+ +
Sbjct: 356 DIHLVHAIEEEIKLKLQEFSVEEKLV 381
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 153/386 (39%), Positives = 209/386 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L+ L+ +G S+PTP+QA+CIP L GRD G A TGSGKTAAF LP L+
Sbjct: 6 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 65
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L P I L+LTPTRELA Q+ + + ++ C+VVGGL Q L
Sbjct: 66 VLSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSR 122
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKR 302
P +V+ATPGR+ DHLR+S + RLLE G F+A++ ++ P R
Sbjct: 123 KPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPAR 182
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSATLT+ ++EL L++ +P A A T+ ++A L+
Sbjct: 183 RQTLLFSATLTDTLNELKSLAMNRPFFWEA---ASEVRTVDELDQRYLLVPEAVKDAYLV 239
Query: 363 SLCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
L +TF + +IIF+ T + L ++ + + LH + Q QR AL F+
Sbjct: 240 HLI-QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFK 298
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT
Sbjct: 299 SSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY 358
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQSI 503
D L+ AI + KL+ V E+ +
Sbjct: 359 DIHLVHAIEEEIKLKLQEFSVEEKLV 384
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 142/361 (39%), Positives = 202/361 (55%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LL+A Y +PT IQ IPL L D+ A TG+GKTAAFALP L+
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 186 RLL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+L+ +P + P +R L+LTPTRELA QVH QFTD+ + GG+STK Q + L+
Sbjct: 66 QLISVQPCK-PELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
DI++ATPGR++D LR S R+L++GF EI ++ + PK +Q
Sbjct: 125 VGVDILIATPGRLLDLLRTE-SVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT +D+ ++ K L +P + D K + + L+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIG- 242
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S+ + +V++F+ TKQ A L +K+ +HG+ +Q R +AL F++ V L
Sbjct: 243 -SRNW-KQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRAL 300
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARG+DI G+ VINY P + YVHR+GRTARAG G AV+ V+ + LL A
Sbjct: 301 IATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTA 360
Query: 485 I 485
I
Sbjct: 361 I 361
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 142/361 (39%), Positives = 202/361 (55%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L LL+A Y +PT IQ IPL L D+ A TG+GKTAAFALP L+
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 186 RLL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+L+ +P + P +R L+LTPTRELA QVH QFTD+ + GG+STK Q + L+
Sbjct: 66 QLISVQPCK-PELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
DI++ATPGR++D LR S R+L++GF EI ++ + PK +Q
Sbjct: 125 VGVDILIATPGRLLDLLRTE-SVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT +D+ ++ K L +P + D K + + L+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIG- 242
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S+ + +V++F+ TKQ A L +K+ +HG+ +Q R +AL F++ V L
Sbjct: 243 -SRNW-KQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRAL 300
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARG+DI G+ VINY P + YVHR+GRTARAG G AV+ V+ + LL A
Sbjct: 301 IATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTA 360
Query: 485 I 485
I
Sbjct: 361 I 361
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 150/380 (39%), Positives = 212/380 (55%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LLRA GY +PTP+Q IP+ L RD+ +A TG+GKTA F LP L+
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 186 RLLY-RP--KRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
RL RP +R P IR LILTPTRELAVQV + ++ ++ +V GG+S K Q
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 300
LR DI+VATPGR++D L N R+L++GF +I +++L P
Sbjct: 131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
+ RQ +LFSAT ++++ EL L P + A+R +T ++
Sbjct: 190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEV---ARR-NTAAARITHVVHPVDRQRKRE 245
Query: 361 LLSLC--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
LLS SK + +V++F+ TK A+RL L +A +HGN +QA R+ AL F++
Sbjct: 246 LLSFMIGSKNWR-QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ L+ATDVAARGLDI + VIN+ P YVHRVGRT RA +G A++ V+ ++
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDE 364
Query: 479 RSLLKAIAKRAGSKLKSRIV 498
LL+ I K SK+ ++
Sbjct: 365 VRLLRDIEKLLQSKMPQEVI 384
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 150/380 (39%), Positives = 212/380 (55%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS LLRA GY +PTP+Q IP+ L RD+ +A TG+GKTA F LP L+
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 186 RLLY-RP--KRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
RL RP +R P IR LILTPTRELAVQV + ++ ++ +V GG+S K Q
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 300
LR DI+VATPGR++D L N R+L++GF +I +++L P
Sbjct: 131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
+ RQ +LFSAT ++++ EL L P + A+R +T ++
Sbjct: 190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEV---ARR-NTAAARITHVVHPVDRQRKRE 245
Query: 361 LLSLC--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
LLS SK + +V++F+ TK A+RL L +A +HGN +QA R+ AL F++
Sbjct: 246 LLSFMIGSKNWR-QVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ L+ATDVAARGLDI + VIN+ P YVHRVGRT RA +G A++ V+ ++
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDE 364
Query: 479 RSLLKAIAKRAGSKLKSRIV 498
LL+ I K SK+ ++
Sbjct: 365 VRLLRDIEKLLQSKMPQEVI 384
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 136/396 (34%), Positives = 213/396 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + NLS L++A +G+ + TPIQA IPL L+ +D+ G A TG+GKTAAF +P +E
Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ P+ P I+ +++ PTRELA+QV + KI Q + + GG Q AL+
Sbjct: 64 KI--NPES-PNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK 120
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P+I+V TPGR++DH+ N + +L +GF +I ++ P QT
Sbjct: 121 NPNIIVGTPGRLLDHI-NRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQT 179
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + +T+P + S + + LL +
Sbjct: 180 LLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQ 239
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S I+F TK+ L L A +HG+LTQA+R+ AL F++ ++ L+
Sbjct: 240 SPELA---IVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLV 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TF+T ++S+L+AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAI 356
Query: 486 ---AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
KR ++K + E + +E++ ++
Sbjct: 357 EQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTIS 392
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 150/385 (38%), Positives = 203/385 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L
Sbjct: 64 LSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRR 303
P +V+ATPGR+ DHLR+S + RLLE G F+A++ ++ P RR
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSATLT+ + EL L+ +P A + + T+ ++A L+
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVR---TVEQLDQRYLLVPEKVKDAYLVH 237
Query: 364 LCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L +TF + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 238 LV-QTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKS 296
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 297 STYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSI 503
LL AI + +L V E +
Sbjct: 357 IHLLHAIEEEIKQQLAELAVEEAQV 381
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 148/385 (38%), Positives = 204/385 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E+ LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L
Sbjct: 64 LSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRR 303
P +V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RR
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSATLT+ + EL L+ +P A + + T+ ++A L+
Sbjct: 181 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVR---TVEQLDQRYLLVPEKVKDAYLVH 237
Query: 364 LCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L +TF + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 238 LV-QTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKS 296
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 297 SIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSI 503
LL AI ++ +L +V E +
Sbjct: 357 IHLLHAIEEQIKQQLAELVVEEAEV 381
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 149/385 (38%), Positives = 203/385 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L
Sbjct: 64 LSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRR 303
P +V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RR
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSATLT+ + EL L+ +P A ST+ ++A L+
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPV---STVEQLDQRYLLVPEKVKDAYLVH 237
Query: 364 LCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L + F + +IIF+ T + L ++ + LH + Q +R AL F+
Sbjct: 238 LIQR-FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKS 296
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 297 SIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSI 503
L+ AI ++ KL+ V E +
Sbjct: 357 IHLVHAIEEQIKKKLEEFSVEEAEV 381
>UNIPROTKB|I3LIB1 [details] [associations]
symbol:LOC100625841 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00550000074997 EMBL:CU407277
Ensembl:ENSSSCT00000025578 OMA:VIAHYRE Uniprot:I3LIB1
Length = 442
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 122/286 (42%), Positives = 183/286 (63%)
Query: 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341
R+L+ F ++ E++R+C RQTMLFSAT+T++V +L +SL P+R+ + +
Sbjct: 21 RMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPF 80
Query: 342 LTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401
L ++EA++ +L +TFT V++F+ TK+ AHR+ IL GL L+ ELH
Sbjct: 81 LRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELH 140
Query: 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRT 461
GNL+Q QRLEAL F+ + +D L+ATDVAARGLDI GV+TVIN+ P + YVHRVGRT
Sbjct: 141 GNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRT 200
Query: 462 ARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAIL 521
ARAGR G +V+ V + +R +LK I K A + +K+RI+ + I K+ IE+ME V A+L
Sbjct: 201 ARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVL 260
Query: 522 QXXXXXXILRKAEMEATKAENMIAH-KEEIFARPKRTWFVTEKEKK 566
Q ++K+E + A+ ++ KE P+R+WF T++E+K
Sbjct: 261 QLEAEEKEMQKSEAQINTAQRLLEKGKEAPNPEPERSWFQTKEERK 306
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 138/372 (37%), Positives = 202/372 (54%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS P+L+A E GY+ P+PIQ IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK R +R LILTPTRELA Q+ + + ++ +V GG+ Q +
Sbjct: 63 LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D L N + R+L++GF +IH++++L P++RQ
Sbjct: 123 GADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT + ++ EL K + P+ +S P+ ST + +L+ L
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPAN---STARTVEQCIYPADVKKKPDMLVKLV 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ +V++F TK A+RL L AA +HGN +Q R AL F+ V L+
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + V+N+ P+ YVHR+GRT RAG G A++ V+ + L AI
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 486 AKRAGSKLKSRI 497
+R L R+
Sbjct: 359 -ERLTQALLPRV 369
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 138/372 (37%), Positives = 202/372 (54%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS P+L+A E GY+ P+PIQ IP L G+D+ +A TG+GKTA F LP LE
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 187 LLYRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L PK R +R LILTPTRELA Q+ + + ++ +V GG+ Q +
Sbjct: 63 LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++D L N + R+L++GF +IH++++L P++RQ
Sbjct: 123 GADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT + ++ EL K + P+ +S P+ ST + +L+ L
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPAN---STARTVEQCIYPADVKKKPDMLVKLV 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ +V++F TK A+RL L AA +HGN +Q R AL F+ V L+
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARG+DI + V+N+ P+ YVHR+GRT RAG G A++ V+ + L AI
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 486 AKRAGSKLKSRI 497
+R L R+
Sbjct: 359 -ERLTQALLPRV 369
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 137/387 (35%), Positives = 203/387 (52%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL + L++ACE LG+ P+ IQA +P AL G+D+ G A TGSGKT AFA+P L+
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 186 RLL-Y----RPKR----IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
LL Y PK+ PA +L+PTRELA+Q+ E + +RC ++VGG+
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELV 296
Q AL P ++VATPGR+ DH+ ++ RLL F +++++
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXN 356
P R+T LFSAT+T+ V +L + L P+++ A A + ST+
Sbjct: 190 EEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEA---ASKYSTVDTLKQQYRFVAAKY 246
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
++ L+ + S+ S +IF+ T L ++ +A + G +TQ++RL AL F
Sbjct: 247 KDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ + L+ TDVA+RGLDI V VINY P + Y+HRVGRTARAGR G ++ V
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSI 503
+ I K G KL E +
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEV 393
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 142/417 (34%), Positives = 216/417 (51%)
Query: 87 DSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYS 146
DS ++ E+ K E E+ +N KS + + +F L + ++ AC LG++
Sbjct: 85 DSLLEKEEEEK-EIEEFINNTNQKKS---EEEEKKYENVTFESLGVHPQIIDACNKLGFN 140
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206
KP IQ IP AL GRDI G A TGSGKTAAF +P L++LL P+ + L L PTR
Sbjct: 141 KPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQ---GLFCLALAPTR 197
Query: 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266
ELA Q+ I ++ C++VGG+ + Q AL P +VV +PGR++ HL ++
Sbjct: 198 ELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKG 257
Query: 267 XXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK 326
RL F E++ ++++ PK R T LFSAT+T V +L + SL
Sbjct: 258 FNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRASLVN 317
Query: 327 PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRL 386
P+++ A + T+ ++ L + ++ + IIF+ T ++ ++
Sbjct: 318 PVKVQV---ASKYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTKI 374
Query: 387 KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446
++ A ++G++ Q +RL +L F++ L+ATDVAARGLDI V VINY
Sbjct: 375 AMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYD 434
Query: 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503
P + YVHRVGRTARAG G A+T VT D + + I KL S E+++
Sbjct: 435 VPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFPCQEETV 491
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 148/385 (38%), Positives = 202/385 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL LS L+ C LG +PTP+Q CIP L GRD G A TGSGKTAAF LP L++
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L P I L+LTPTRELA Q+ + + ++ C++VGG+ Q L
Sbjct: 64 LSEDPY---GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKRR 303
P +V+ATPGR+ DHLR+S + RLLE G F+ ++ ++ P RR
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSATLT+ + EL L+ +P A + T+ ++A L+
Sbjct: 181 QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVR---TVEQLDQRYLLVPEKVKDAYLVH 237
Query: 364 LCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
L + F + +IIF+ T + L ++ LH + Q +R AL F+
Sbjct: 238 LI-QNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKS 296
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
LIATDVA+RGLDI VQ VIN+ P Y+HRVGRTARAGR+G A+T VT D
Sbjct: 297 SIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Query: 479 RSLLKAIAKRAGSKLKSRIVAEQSI 503
L+ AI ++ KL+ V E +
Sbjct: 357 IHLVHAIEEQIKKKLEEFSVEEAEV 381
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 138/375 (36%), Positives = 205/375 (54%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L LS LL+A GY P+PIQA IP ++GRD+ +A TG+GKTA F LP L+R
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 187 LLY-RPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L + ++ + +R LILTPTRELA Q+ IE ++ ++ +V GG+ Q L
Sbjct: 68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
R D++VATPGR++D L N + R+L++GF +I +L+ PK R
Sbjct: 128 RQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDR 186
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
Q +LFSAT + ++ L K + PL +S D A+ ST + AVL
Sbjct: 187 QNLLFSATFSPEIRALAKGMVNNPLEISVD--AEN-STAEKVTQWLTAVDKKRKPAVLTH 243
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + +V++F+ TK A++L L AA +HGN +Q R +AL F+ V
Sbjct: 244 LIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKI 303
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATD+AARG+DI + V+N+ P YVHR+GRTARAG G A++ V ++ LL
Sbjct: 304 LVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLW 363
Query: 484 AIAKRAGSKLKSRIV 498
I ++ +++
Sbjct: 364 GIEHVIQQHIERKVI 378
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 140/365 (38%), Positives = 200/365 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L+L+ L+ LGY +PTPIQ IP LT +D+ A TG+GKTAAFALP L+
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 186 RLL---YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L+ AIR L+L PTRELA+QV K A+ TDIR + GG+S + Q+
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
+ D+++ATPGR++DHLR + R+L++GF EI +++ P +
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSATL + + K L P R+ AK P+T +++ +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEV---AK-PNTTAAQIEQRVYAIDSDRKTEFV 236
Query: 363 S--LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
S + SK + +V+IFS TKQ +L + HG+L+Q R + L+ F++
Sbjct: 237 SHLVRSKNW-QQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGL 295
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
V L+ATDVAARGLDI +Q VIN+ P Y+HR+GRT RAG G A+T + D
Sbjct: 296 VQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 355
Query: 481 LLKAI 485
LL+ +
Sbjct: 356 LLEEV 360
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 140/365 (38%), Positives = 200/365 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L+L+ L+ LGY +PTPIQ IP LT +D+ A TG+GKTAAFALP L+
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 186 RLL---YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L+ AIR L+L PTRELA+QV K A+ TDIR + GG+S + Q+
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
+ D+++ATPGR++DHLR + R+L++GF EI +++ P +
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSATL + + K L P R+ AK P+T +++ +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEV---AK-PNTTAAQIEQRVYAIDSDRKTEFV 236
Query: 363 S--LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
S + SK + +V+IFS TKQ +L + HG+L+Q R + L+ F++
Sbjct: 237 SHLVRSKNW-QQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGL 295
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
V L+ATDVAARGLDI +Q VIN+ P Y+HR+GRT RAG G A+T + D
Sbjct: 296 VQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDAL 355
Query: 481 LLKAI 485
LL+ +
Sbjct: 356 LLEEV 360
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 156/493 (31%), Positives = 245/493 (49%)
Query: 34 KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQH 93
K K+ KQS E S ++ S + K + + + D + D E ++
Sbjct: 32 KKVKQTKQSKAQAKEIQELASTPSVKQ-IQSQKVLVPKLEETKPITPPDQEEEDQEEEEQ 90
Query: 94 EDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
E + E+E++ +N G+ G S + F L + ++ E +G+ K TPIQA
Sbjct: 91 EQEEEENENNDNNTGNVSE---KELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQA 147
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLL---YRPKRIPAIRVLILTPTRELAV 210
I L G+D+ G+A TGSGKT AF +P +E L+ ++P+ V+I++PTRELA+
Sbjct: 148 KSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRN--GTGVIIISPTRELAL 205
Query: 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXX 270
Q++ + ++ ++ +V+GG S K +E L +++VATPGR++DHL+N+
Sbjct: 206 QIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITK 265
Query: 271 XXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLR 329
R+LE+GF E+H++++ PK RQTMLFSAT T VD++ K+SL P+
Sbjct: 266 NLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVY 325
Query: 330 LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 389
+ D + ST+ + +L + K + K+I+F + A L
Sbjct: 326 VGVDDE-REISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAEL 384
Query: 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 449
+ ELHG Q +R F LI TDVAARGLDI V +I Y P
Sbjct: 385 LNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPD 444
Query: 450 DLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
D Y+HRVGRTAR G++G A+ F+ + LK + KL + E K SK
Sbjct: 445 DPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYL------KLAKVPLNEYEFPK-SK 497
Query: 509 IIEQMEDQVAAIL 521
I ++DQ+ ++
Sbjct: 498 IAN-VQDQLEKVV 509
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 134/378 (35%), Positives = 202/378 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + LS L +A + +G+ + TPIQA IPL L +D+ G A TG+GKTAAF +P +E
Sbjct: 4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ P+ P I+ +++ PTRELA+QV + KI Q R + GG Q AL+
Sbjct: 64 KI--NPES-PNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKK 120
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P QT
Sbjct: 121 NPHIIVGTPGRLLDHI-NRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQT 179
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + +T P + S + + LL +
Sbjct: 180 LLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQ 239
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
S I+F TK+ L L A +HG+LTQA+R+ AL F++ ++ L+
Sbjct: 240 SPELA---IVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLV 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TF+T ++ +L+AI
Sbjct: 297 ATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356
Query: 486 ---AKRAGSKLKSRIVAE 500
KR ++K+ + E
Sbjct: 357 EQTTKRKMDRMKAPTLDE 374
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 148/444 (33%), Positives = 224/444 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + +LRA GY K TPIQ IP G+D+ SA TG+GKTAAFALP L++
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 187 LLYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
++ P RVLILTPTRELA QV +E +++ + + GG+ + Q L+
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
DI+VATPGR+++HL + + R+L++GFSA+I ++++ K+RQ
Sbjct: 123 RGADIIVATPGRLLEHL-TACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
+LFSAT + V +L + KP +SAD K+ +T + +L L
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISAD---KQNTTADTVSQVVYPVEQRRKRELLSEL 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
K +V++F+ T+ AA L L + + +HG Q R AL F V L
Sbjct: 239 IGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+AT+VAARGLDI ++ V+N+ P YVHR+GRT RAG+ G A++FV+ + L
Sbjct: 299 VATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLAD 358
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMI 544
I K G K++ V + +++Q++ + +K + + +E MI
Sbjct: 359 IEKLIGQKIRRITVPGYEVGSRDLLLKQLQTR----------RSFAKKQQRQDNVSEQMI 408
Query: 545 AHKEEIFARPK-RTWFVTEKEKKL 567
A K R K + K KKL
Sbjct: 409 AEKSMQGRRVKMKVGQAPSKAKKL 432
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 139/396 (35%), Positives = 214/396 (54%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L PLL+A LG+ PTPIQ IPL L G ++ G A TG+GKTAA+ LP L+R
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ R K+ +VLI+TPTRELA+QV + K+ ++ +R V GG + + Q LR
Sbjct: 64 I-QRGKKA---QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 306
+++V TPGR++DH+ + +L++GF +I ++ R+QT+
Sbjct: 120 VEVIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178
Query: 307 LFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
LFSATL + +IK L K ++L R T+ + L+S+
Sbjct: 179 LFSATLPAPIKTIIKKFLGGYKTVKLVG-----REKTVPAIRQVYYELPETEKIEGLVSI 233
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + I+F TK+ + A LHG+++Q +R + ++ F+ + L
Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VIN+ P++ SY+HR+GRT RAGREG A+T + +R LLKA
Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKA 353
Query: 485 IAKRAGSKLKSRIVAEQ---SITKWSKIIEQMEDQV 517
I + +LK I+ E ++ KI +++ D +
Sbjct: 354 IEEAINKRLKREILPEPVDLEEARFKKIAKKILDTI 389
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 139/396 (35%), Positives = 214/396 (54%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L PLL+A LG+ PTPIQ IPL L G ++ G A TG+GKTAA+ LP L+R
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+ R K+ +VLI+TPTRELA+QV + K+ ++ +R V GG + + Q LR
Sbjct: 64 I-QRGKKA---QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 306
+++V TPGR++DH+ + +L++GF +I ++ R+QT+
Sbjct: 120 VEVIVGTPGRILDHIGRK-TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178
Query: 307 LFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
LFSATL + +IK L K ++L R T+ + L+S+
Sbjct: 179 LFSATLPAPIKTIIKKFLGGYKTVKLVG-----REKTVPAIRQVYYELPETEKIEGLVSI 233
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + I+F TK+ + A LHG+++Q +R + ++ F+ + L
Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI V VIN+ P++ SY+HR+GRT RAGREG A+T + +R LLKA
Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKA 353
Query: 485 IAKRAGSKLKSRIVAEQ---SITKWSKIIEQMEDQV 517
I + +LK I+ E ++ KI +++ D +
Sbjct: 354 IEEAINKRLKREILPEPVDLEEARFKKIAKKILDTI 389
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 141/362 (38%), Positives = 195/362 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L+ L+ C+ LG+ P+ IQA IP L GRDI SA TGSGKTA+FA+P L
Sbjct: 5 TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN 64
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L P + A+ ILTPTRELAVQ+ I ++ C +V+GG+ Q L
Sbjct: 65 QLSEDPYGVFAV---ILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDK 121
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP--KRR 303
P I+VATPGR+ HL N + RLL F EI ++ P ++R
Sbjct: 122 RPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKR 181
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT+T+++ +L ++L KP + D S + T+ ++ L+
Sbjct: 182 QTLLFSATMTKNLTKLDSIALNKPF-IFEDNS--KYDTVDTLKQEYIYMPAPTKDCYLVY 238
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+ K S I+F A +K + + + LH L Q RL AL+ F+ V
Sbjct: 239 ILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKV 298
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVA+RGLDI VQ VINY Y+HRVGRTAR GR G A++F+T +D SL+K
Sbjct: 299 LVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIK 358
Query: 484 AI 485
I
Sbjct: 359 GI 360
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 150/415 (36%), Positives = 220/415 (53%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
A F +F +L L P+L A LGY KP+PIQA CIP L GRD+ G A TGSGKTAAF
Sbjct: 2 AEFET-TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60
Query: 180 ALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIEKIAQFTDIRCCLVVGGLSTKM 238
+LP L+ L P+ + A ++L+L PTRELAVQV +M + + + GG +
Sbjct: 61 SLPLLQNL--DPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 298
Q ALR P IVV TPGR++DHL+ + +L +GF ++ ++
Sbjct: 118 QLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK-RPSTLTXXXXXXXXXXXXNQ 357
P+ QT LFSAT+ E + + + + +P + S RP
Sbjct: 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDI---SQSYWTVWGMRKN 233
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
EA++ L ++ F + IIF TK A + +A L+G++ QA R + LE +
Sbjct: 234 EALVRFLEAEDFDA-AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
+D LIATDVAARGLD+ + V+NY P D SYVHR+GRT RAGR G A+ FV +
Sbjct: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352
Query: 478 DRSLLKAIAKRAGSKL------KSRIVAEQSITKWS-KIIEQME----DQVAAIL 521
+R LL+ I + + + ++ ++ + K++ K+ +Q+E DQ A+L
Sbjct: 353 ERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALL 407
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 135/368 (36%), Positives = 199/368 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + + I ++ PTRELA+QV + KI + +R + GG Q AL+
Sbjct: 63 KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P+ QT
Sbjct: 120 HPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 486 AKRAGSKL 493
+ K+
Sbjct: 356 ERTTKRKM 363
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 150/455 (32%), Positives = 238/455 (52%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS+ +++A E +G+ + TPIQA IPL+L +D+ G A TG+GKTAAF +P +E
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + A++ L++ PTRELA+QV + KI +R + GG + Q AL+
Sbjct: 63 KVNVKNS---AVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P ++V TPGR+IDH+ N + +L +GF +I ++ P RQT
Sbjct: 120 HPHVIVGTPGRIIDHI-NRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + + +P + AK T+ + +L L
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV--KAKE-MTVPNIQQYYLEVHEKKKFDILTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+L+QA+RL L F++ ++ L+
Sbjct: 236 DIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG+ G A+TFVT + L I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHI 355
Query: 486 ---AKRAGSKLKSRIVAEQSITKWSKI-IEQMEDQVAAILQXXXXXXILRKAE--MEATK 539
KR ++K + ++++ +I IE++ + +++ R AE +E
Sbjct: 356 ERTTKRKMERMKPPTL-DEALEGQQRIAIEKLLN----VVETENLSFYKRAAEELLEEHD 410
Query: 540 AENMIAHKEEIFAR-PKRTWFVTEKEKKLAVKADK 573
+ ++A ++ R P T +E LAVK +K
Sbjct: 411 SVTIVAACLKMLTREPDTTPVQLTEEPPLAVKREK 445
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 135/368 (36%), Positives = 199/368 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + + I ++ PTRELA+QV + KI + +R + GG Q AL+
Sbjct: 63 KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P+ QT
Sbjct: 120 HPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 486 AKRAGSKL 493
+ K+
Sbjct: 356 ERTTKRKM 363
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 135/368 (36%), Positives = 199/368 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + + I ++ PTRELA+QV + KI + +R + GG Q AL+
Sbjct: 63 KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P+ QT
Sbjct: 120 HPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 486 AKRAGSKL 493
+ K+
Sbjct: 356 ERTTKRKM 363
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 135/368 (36%), Positives = 199/368 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + + I ++ PTRELA+QV + KI + +R + GG Q AL+
Sbjct: 63 KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P+ QT
Sbjct: 120 HPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 486 AKRAGSKL 493
+ K+
Sbjct: 356 ERTTKRKM 363
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 135/368 (36%), Positives = 199/368 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + + I ++ PTRELA+QV + KI + +R + GG Q AL+
Sbjct: 63 KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P+ QT
Sbjct: 120 HPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 486 AKRAGSKL 493
+ K+
Sbjct: 356 ERTTKRKM 363
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 135/368 (36%), Positives = 199/368 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + + I ++ PTRELA+QV + KI + +R + GG Q AL+
Sbjct: 63 KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P+ QT
Sbjct: 120 HPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 486 AKRAGSKL 493
+ K+
Sbjct: 356 ERTTKRKM 363
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 135/368 (36%), Positives = 199/368 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LL++ E++G+ + TPIQA IP AL G+DI G A TG+GKTAAF LP L+
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++ + + I ++ PTRELA+QV + KI + +R + GG Q AL+
Sbjct: 63 KVDTHKESVQGI---VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
P I+V TPGR++DH+ N + +L +GF +I ++ P+ QT
Sbjct: 120 HPHIIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ + + + + +T+P + AK T+ + VL L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKV--KAKEV-TMPNIQQFYLEVQEKKKFDVLTRLL 235
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
I+F TK+ L L A +HG+LTQA+R+ L F++ ++ L+
Sbjct: 236 DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLV 295
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI GV V N+ P+D SYVHR+GRT RAG++G A+ FVT + LK I
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNI 355
Query: 486 AKRAGSKL 493
+ K+
Sbjct: 356 ERTTKRKM 363
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 143/388 (36%), Positives = 207/388 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L LS L++ C+ +G S+PT +Q CIP L GRD G A TGSGKTAAF LP L+
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+L P + L+LTPTRELA Q+ + + ++ C++VGG+ Q L
Sbjct: 63 KLSEDPY---GVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSK 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELG---FSAEIHELVRLCPKR 302
P +VVATPGR+ DH+R+S + RLLE G F+ ++ ++ P +
Sbjct: 120 KPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAK 179
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSATLT+ + +L +++ +P + T+ ++A L+
Sbjct: 180 RQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQ---TVEELDQRFILTPEKVKDAYLV 236
Query: 363 SLCSKTFTSK-----VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
L +TF + +IIF+ T ++ L ++ LH + Q QR L F+
Sbjct: 237 HLI-QTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFK 295
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
LIATDVAARGLDI VQ VIN+ P Y+HRVGRTARAGR G ++T VT
Sbjct: 296 SNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQY 355
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQSITK 505
D L+ AI ++ +KLK + E+ + K
Sbjct: 356 DIHLINAIEEQNQTKLKEFPIEEKEVLK 383
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 135/377 (35%), Positives = 209/377 (55%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L LL A + G+++PT IQAA IP AL GRD+ GSA TG+GKTAA+ LP L+
Sbjct: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 186 RLLYRP-KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LL P K+ R+LILTPTRELA+QV ++A+ T + + GG++
Sbjct: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
DIVVAT GR++ +++ + R+L++GF+ +I + R+Q
Sbjct: 125 ENQDIVVATTGRLLQYIKEE-NFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQ 183
Query: 305 TMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
T+LFSATL D + + + L P+ +SA+PS + + ++ A+L+
Sbjct: 184 TLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKI--HQWYYRADDLEHKTALLVH 241
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L + ++ I+F ++ H L A + L G + Q +R EA++ + V+
Sbjct: 242 LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 301
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARG+DI V V N+ PR +Y+HR+GRTARAGR+G A++ V +D LL
Sbjct: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361
Query: 484 AIAKRAGSKLKSRIVAE 500
+ + +K+R++ E
Sbjct: 362 KVGRYIEEPIKARVIDE 378
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 141/420 (33%), Positives = 217/420 (51%)
Query: 80 IVDNDHSDSEF-----DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSR 134
I++N+H + F +++ D + DD N G+ K+ + + +F +LN+
Sbjct: 108 IINNNHDNINFIHGNKNKNHDNSFHNNDDVKN-GEVKNLVTNEEREKQNV-TFEDLNICE 165
Query: 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 194
+L + + LG+ KPT IQ +P A +DI G + TGSGKTA F +P L+ L +
Sbjct: 166 EILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSF 225
Query: 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
A L+++PTREL +Q+ + + I C + GG+ Q L P+++V+TP
Sbjct: 226 YA---LVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVSTP 282
Query: 255 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314
GR++DHL N+ +LL F + I++L+ + P R T LFSAT+T+
Sbjct: 283 GRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFLFSATMTK 342
Query: 315 DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVI 374
+V +L K L P+++ + + ST++ + L SLC T +I
Sbjct: 343 NVAKLKKACLKNPVKVEV---SNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNII 399
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF+ T A +L LK+ LHG LTQ QRL +L F+ + LI+T V ARGL
Sbjct: 400 IFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGL 459
Query: 435 DIIGVQTVINY-ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
D+ ++ VIN+ C Y+HRVGRTARAGR G ++TFVT D AI K+ K+
Sbjct: 460 DLQDIKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKI 517
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 141/420 (33%), Positives = 217/420 (51%)
Query: 80 IVDNDHSDSEF-----DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSR 134
I++N+H + F +++ D + DD N G+ K+ + + +F +LN+
Sbjct: 108 IINNNHDNINFIHGNKNKNHDNSFHNNDDVKN-GEVKNLVTNEEREKQNV-TFEDLNICE 165
Query: 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 194
+L + + LG+ KPT IQ +P A +DI G + TGSGKTA F +P L+ L +
Sbjct: 166 EILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSF 225
Query: 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
A L+++PTREL +Q+ + + I C + GG+ Q L P+++V+TP
Sbjct: 226 YA---LVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVSTP 282
Query: 255 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314
GR++DHL N+ +LL F + I++L+ + P R T LFSAT+T+
Sbjct: 283 GRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFLFSATMTK 342
Query: 315 DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVI 374
+V +L K L P+++ + + ST++ + L SLC T +I
Sbjct: 343 NVAKLKKACLKNPVKVEV---SNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNII 399
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
IF+ T A +L LK+ LHG LTQ QRL +L F+ + LI+T V ARGL
Sbjct: 400 IFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGL 459
Query: 435 DIIGVQTVINY-ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
D+ ++ VIN+ C Y+HRVGRTARAGR G ++TFVT D AI K+ K+
Sbjct: 460 DLQDIKIVINFDIC--SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKI 517
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 411 (149.7 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 106/304 (34%), Positives = 156/304 (51%)
Query: 63 TSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDF--SNAGDTKSFFAPADGA 120
TS + I+ SL+ V I ++ D + E+ ED+ ++ S ++ G
Sbjct: 6 TSDEVDISNSLKAFPVDIATDNQKDKHENVGENVSDEDDGNYIASKLLESNRRTKGKKGN 65
Query: 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFA 180
A++F + L++ LLRA G+ PTPIQ IPL L GRD+ G A TGSGKTAAF
Sbjct: 66 G-KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFV 124
Query: 181 LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240
+P +E L R LIL+P RELA+Q +++ ++ TD+R +VGG+S + Q
Sbjct: 125 IPMIEHLKSTLANSNT-RALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQF 183
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 300
+ L PDIVVATPGR + HL+ M RL E+GF+A++ E++ P
Sbjct: 184 SLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALP 242
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
RQT+LFSATL + + K L P+ + D +K + L +EA
Sbjct: 243 TSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTA---EREAA 299
Query: 361 LLSL 364
LL +
Sbjct: 300 LLCI 303
Score = 204 (76.9 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 57/188 (30%), Positives = 92/188 (48%)
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
++F TK + L A ++++G+L Q RL + FR + L+ TDVA+RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+DI + VINY P +VHRVGRTARAGR G+A + V D L + L
Sbjct: 410 IDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPL 469
Query: 494 --KSRIVAEQSITKWSK--IIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEE 549
S+ V S ++K ++ + ++ A L + R E++ + N+ A E+
Sbjct: 470 VTSSKQVKTDSDCDFTKQIVLGSLPQELVAELLEWVQRIVSRDVELQ--QLSNVAARGEK 527
Query: 550 IFARPKRT 557
++ R + T
Sbjct: 528 LYFRTRAT 535
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 142/368 (38%), Positives = 195/368 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS PLL A GY + T +Q IPLAL G+DI A TG+GKTAAFALP LE+
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L +P P +R L++TPTRELA+QV + I+K +QF ++ V GG + Q +
Sbjct: 63 LAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 306
DI+VATPGR+ D + + R+L+LGF +I ++ RL QTM
Sbjct: 123 VDILVATPGRLFDII-GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS-LC 365
LFSAT ++ V +L L +P ++ +T ++A LLS L
Sbjct: 182 LFSATYSDAVKQLSHKMLNQPQWVNV-----AENTTASTVEQLVYRVDKRRKAELLSELV 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ +V++F+ TK+ A L L + A HG+ TQ R L+ F+ + L+
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI + VIN P YVHR+GRT RAG G A++FV+ D +L I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356
Query: 486 AKRAGSKL 493
G KL
Sbjct: 357 EALIGEKL 364
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 135/389 (34%), Positives = 212/389 (54%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + +L LL + +GY+KPT IQ IP A+ G+D+ SA TG+GKTAAF LP +
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 187 LLYRPKRIPAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
LL P+ P RVLILTPTRELA+Q+ E++ + T I+ ++ GG++ L S
Sbjct: 75 LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 134
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR+++++ N R+L+LGFS I+ +V R+QT
Sbjct: 135 TTDILVATPGRLLEYIENEQ-FDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQT 193
Query: 306 MLFSATL-TEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
MLFSATL + V + L +P+ L + PS K + + ++ +L++
Sbjct: 194 MLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVI--HQWLHLADDANHKLNLLVNT 251
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + ++F+ ++ L L L G + Q +R +A+E F+K V L
Sbjct: 252 LKQEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVL 311
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI + VIN+ PR + Y+HR+GRT RAG++G A++ V +D ++
Sbjct: 312 VATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGK 371
Query: 485 IAKRAGSKLKSRIVAE-QSITKWSKIIEQ 512
I + +L R + E + K S+++ +
Sbjct: 372 IERYTKERLSRRFIQELRPKNKESRVVNK 400
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 135/357 (37%), Positives = 196/357 (54%)
Query: 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201
A GY PTPIQA IP + GRD+ G A TG+GKTAAFALP L RL + +R +R L+
Sbjct: 18 AAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRL-QQGER-GRVRALV 75
Query: 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 261
+ PTRELA Q++ + + T +R V GG+ Q L++ ++VVA PGR++DH+
Sbjct: 76 IAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRLLDHI 135
Query: 262 RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321
+ ++ ++GF +I +++ P RRQT+LFSAT+ D+ L +
Sbjct: 136 AQG-TIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTLAQ 194
Query: 322 LSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQ 381
L P+ + A P+ + +LL L T T V+IF+ TK
Sbjct: 195 DILVDPVTVQVGTVA--PAVTVAHALYPVEQHL--KTPLLLELLRHTDTESVLIFTRTKH 250
Query: 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441
A RL A +AA L GNL+Q +R AL+ FR L+ATD+AARG+D+ V
Sbjct: 251 RAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQVSH 310
Query: 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498
VINY P +Y+HR+GRT RA R G A T VT +D ++++AI + G+ ++ R V
Sbjct: 311 VINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLGAPIERRTV 367
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 142/368 (38%), Positives = 195/368 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS PLL A GY + T +Q IPLAL G+DI A TG+GKTAAFALP LE+
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L +P P +R L++TPTRELA+QV + I+K +QF ++ V GG + Q +
Sbjct: 63 LAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 306
DI+VATPGR+ D + + R+L+LGF +I ++ RL QTM
Sbjct: 123 VDILVATPGRLFDII-GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS-LC 365
LFSAT ++ V +L L +P ++ +T ++A LLS L
Sbjct: 182 LFSATYSDAVKQLSHKMLNQPQWVNV-----AENTTASTVEQLVYRVDKRRKAELLSELV 236
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ +V++F+ TK+ A L L + A HG+ TQ R L+ F+ + L+
Sbjct: 237 GRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLV 296
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATDVAARGLDI + VIN P YVHR+GRT RAG G A++FV+ D +L I
Sbjct: 297 ATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEI 356
Query: 486 AKRAGSKL 493
G KL
Sbjct: 357 EALIGEKL 364
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 159/506 (31%), Positives = 255/506 (50%)
Query: 81 VDNDHSDSEFDQHEDYKPEDEDDFSNAGDT-KSFFAPADGASFHANSFMELNLSRPLLRA 139
V+++ ++ + E+ + E+ D+F ++ DT K D + F +L + + +
Sbjct: 46 VEDEEDEASDEDEEESEGEEGDEFKSSDDTPKPIQISEDNMT--TKKFSQLGVCSWITQQ 103
Query: 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199
+ + TP+QAACIP L G DI G A TG+GKT AFA+P L++L P I A
Sbjct: 104 LQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYA--- 160
Query: 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMID 259
LILTPTRELA Q+ + + ++C ++VGG S Q L P +VVATPGR+ D
Sbjct: 161 LILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLAD 220
Query: 260 HLRN---SMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316
+ + +++ R+LE ++ ++ + ++RQT+L SAT+T ++
Sbjct: 221 LIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNI 280
Query: 317 DELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL----SLCSKTFTSK 372
+ L ++S KP D ST+ ++A L+ + K S
Sbjct: 281 NMLHRVSTRKPYFFE-DKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSS 339
Query: 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432
V+IF+ T + L +F + LH + Q QRL AL FR + + +I TDVA+R
Sbjct: 340 VMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASR 399
Query: 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492
GLDI V V+N+ P+ +Y+HRVGR+ARAGR G A++FVT D LL+A+ + G K
Sbjct: 400 GLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKK 459
Query: 493 LKSRIVAEQSITKW--SKIIEQMEDQVAAILQXXXXXX-ILRKAE--MEATKAENMIAHK 547
L V+ + +TK+ ++ + E ++ Q I R+ E M + H
Sbjct: 460 LDELKVSPKHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRRKELLMSGMDEDEADRHL 519
Query: 548 EEIFARPKRTWFVTEKEKKLAVKADK 573
EE+ R +R K +K++ + DK
Sbjct: 520 EEM--RTRRMTNSKRKLEKISGQLDK 543
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 137/385 (35%), Positives = 206/385 (53%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
+ +F+EL +S G ++ TPIQ IP+ L+G+DI G A TG+GKT AF LP
Sbjct: 3 YLKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP 62
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQET 241
LE++ P+ ++ LI+ PTRELA+Q+ + I+K + Q DI + GG Q
Sbjct: 63 ILEKI--DPESSD-VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLR 119
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
L+ IVVATPGR++DH+R + ++L GF +I +++ P
Sbjct: 120 KLKGNTHIVVATPGRLLDHIRRE-TIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPG 178
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
+QTMLFSAT+ +D+ +L K + +P + T+ + +
Sbjct: 179 SKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFV 238
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ + F + +IF TK A +L L GL AELHG++ QA+R ++ FR+
Sbjct: 239 MDR-DQPFLA--VIFCRTKVRASKLYDNLKGLG-YNCAELHGDIPQAKRERVMKSFREAK 294
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ +LIATDVAARGLD+ GV V NY P D+ SY+HR+GRT RAG G A+TFV D
Sbjct: 295 IQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEK 354
Query: 481 LLKAIAKRAGSKLKSRIVAEQSITK 505
L+ I K G+ ++ I+ + I +
Sbjct: 355 HLEEIEKTLGAPIQREIIEQPKIKR 379
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 137/385 (35%), Positives = 206/385 (53%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
+ +F+EL +S G ++ TPIQ IP+ L+G+DI G A TG+GKT AF LP
Sbjct: 3 YLKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLP 62
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQET 241
LE++ P+ ++ LI+ PTRELA+Q+ + I+K + Q DI + GG Q
Sbjct: 63 ILEKI--DPESSD-VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLR 119
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
L+ IVVATPGR++DH+R + ++L GF +I +++ P
Sbjct: 120 KLKGNTHIVVATPGRLLDHIRRE-TIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPG 178
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
+QTMLFSAT+ +D+ +L K + +P + T+ + +
Sbjct: 179 SKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFV 238
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+ + F + +IF TK A +L L GL AELHG++ QA+R ++ FR+
Sbjct: 239 MDR-DQPFLA--VIFCRTKVRASKLYDNLKGLG-YNCAELHGDIPQAKRERVMKSFREAK 294
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ +LIATDVAARGLD+ GV V NY P D+ SY+HR+GRT RAG G A+TFV D
Sbjct: 295 IQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEK 354
Query: 481 LLKAIAKRAGSKLKSRIVAEQSITK 505
L+ I K G+ ++ I+ + I +
Sbjct: 355 HLEEIEKTLGAPIQREIIEQPKIKR 379
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 140/378 (37%), Positives = 198/378 (52%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+RA EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLLYRPKRIP---------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236
RL P +P RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLF--PNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGM 119
Query: 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELV 296
Q A+ D++VA PGR++D L S R+L++GF ++ +++
Sbjct: 120 NPQVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL 178
Query: 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXN 356
P +RQ +LFSAT + D+ L L P R+ P P+T N
Sbjct: 179 ARLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTP----PNTTVERIEQRVFRLAAN 234
Query: 357 QEAVLLS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALEL 415
+ LL+ L + +V++F+ TK A+RL L A +HGN +Q R +AL
Sbjct: 235 HKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALAD 294
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F+ V ++ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V
Sbjct: 295 FKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVA 354
Query: 476 DNDRSLLKAIAKRAGSKL 493
++ LLK+I + K+
Sbjct: 355 PDEEKLLKSIERMTKQKI 372
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 137/392 (34%), Positives = 208/392 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS LLRA + LGY KPTPIQ+A I + G+DI G A TG+GKT AFALP L
Sbjct: 7 TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR 244
++ + P ++L+L PTRELAVQV A+F + + GG S + Q AL+
Sbjct: 67 KVT--SQTTP--QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
P ++V TPGR++DH+R + +L++GF +I ++ P +RQ
Sbjct: 123 RGPQVIVGTPGRVMDHMRRG-TLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQ 181
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
LFSAT+ E + + L +S A +T+ N+ L+ +
Sbjct: 182 LALFSATMPEQIKRVANKHLKNATNISI---AASHTTVDSIEQRFVQVSQHNKLEALVRV 238
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
T +IIF T+ + L ++ LHG++ Q R A+E + +D L
Sbjct: 239 LEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDIL 298
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IATDVAARGLD+ + V+NY P D +YVHR+GRT RAGR G A+ FVT + +L+
Sbjct: 299 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 358
Query: 485 IAKRAGSKLKS-RIVAEQSIT--KWSKIIEQM 513
I + S++ ++ + +++ + S++ EQ+
Sbjct: 359 IERATNSRISPMKVPSPETVAERRLSRLGEQL 390
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 146/389 (37%), Positives = 214/389 (55%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS P+L A LGY+KPT IQ IP+ L G+DI +A TG+GKTA+F LP LE
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 186 RL--LYRP--KRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239
+L Y+ K++ A IR LIL PTRELAVQV + I + A++ DI + GG+ + Q
Sbjct: 62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQ 121
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC 299
+ L DI+VATPGR++D + + R+L++GF +I++++
Sbjct: 122 KQRLIWGVDILVATPGRLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLS--ADPSAKRPSTLTXXXXXXXXXXXXNQ 357
P+ RQ +LFSAT++E+V L K ++ KP+ +S AD ++K P N+
Sbjct: 181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASK-PKI----EQWLVTVDKANK 235
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
A+L + + + +IF TK A +L + A +H Q R + L F+
Sbjct: 236 SALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFK 295
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-D 476
+ FL+AT +AARGLDI + VINY P + Y+HR+GRT RAG G A++ V+ D
Sbjct: 296 SGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKD 355
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITK 505
N R L AI R G ++ + E + K
Sbjct: 356 NFRELC-AIESRLGHIIERKEFEEFPVKK 383
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 139/367 (37%), Positives = 201/367 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS +LRA GY +PTPIQ IP L GRD+ SA TG+GKTA F LP L+
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 186 RLLYR-PK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
L+ R P R P +R LILTPTRELA Q+ + +++ +IR +V GG+S Q
Sbjct: 62 HLITRQPHAKGRRP-VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
LR D++VATPGR++D L + + R+L++GF +I ++ P
Sbjct: 121 KLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
+RQ +LFSAT ++D+ L + L PL + A+R +T + ++ L
Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEV---ARR-NTASDQVTQHVHFVDKKRKREL 235
Query: 362 LS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LS + K +V++F+ TK A+ L +++A +HGN +Q R AL F+
Sbjct: 236 LSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGD 295
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATD+AARGLDI + V+NY P YVHR+GRT RA G A++ V ++
Sbjct: 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355
Query: 481 LLKAIAK 487
LL+ I K
Sbjct: 356 LLRDIEK 362
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 138/375 (36%), Positives = 199/375 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L LS L+ A EA GY++PTP+Q IP L GRD+ +A TG+GKT FALP LE
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 186 RLLYR--PKRI----PAI-RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
RL P + P RVL+LTPTRELA QVH + A+ + GG+
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 298
Q A+ D++VA PGR++D L S R+L++GF ++ +++
Sbjct: 122 QVQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQE 358
P +RQ +LFSAT ++D+ +L L P R+ P +T+ ++
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPN---TTVERIEQRVFRLPASHKR 237
Query: 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418
A+L L + +V++F+ TK A+RL L A +HGN +Q R +AL F+
Sbjct: 238 ALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKA 297
Query: 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
V L+ATD+AARGLDI + V+N+ P YVHR+GRT RAGR G A++ V ++
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Query: 479 RSLLKAIAKRAGSKL 493
LLK+I + K+
Sbjct: 358 EKLLKSIERMTKQKI 372
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 138/398 (34%), Positives = 208/398 (52%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+ F +L ++ GY +PTPIQ CIP + G D+ G A TG+GKTAAF+LP +
Sbjct: 2 SEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPII 61
Query: 185 ERLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+ I A R LILTPTRELA Q+ I+ + ++ +V GG+ + Q +
Sbjct: 62 NKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDS 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
+ DI+VATPGR++D + +L++GF ++ ++ PK
Sbjct: 122 IELGLDILVATPGRLLDLIETG-DINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKS 180
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSAT+ +++ L + LT P ++ T+ N+ +L
Sbjct: 181 RQTLLFSATMPAEIEILAEAILTDPTKIQITAETV---TIDLVNQSVYHLDKSNKVPLLF 237
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
++ +K KV+IF TK A + A++ AA LH TQA R EAL+ F+ +
Sbjct: 238 NILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLR 297
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARG+D+ + VINY P D +Y+HR+GRTARAG+ G A++F +ND L
Sbjct: 298 VLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQL 357
Query: 483 KAIAKRAGSKLKSRIVAEQSITK-WSK--IIEQMEDQV 517
I G + +V EQ K +SK I ++ + QV
Sbjct: 358 TNIENSIGQVIP--VVTEQPFHKEFSKAPIQDKKKKQV 393
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 130/369 (35%), Positives = 191/369 (51%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF N + ++ A GY +PTPIQA IP L G D+ G A TG+GKTAA+ALP ++
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
++L P+ +R L+L PTRELA Q+ + Q IR C + GG++ Q LRS
Sbjct: 62 KMLSTPRG--RVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRS 119
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
D+VVA PGR++DH+ + R+ ++GF +I +++ + QT
Sbjct: 120 GVDVVVACPGRLLDHIWRG-TIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQT 178
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT+ +V +L + T P+ + A S + +L+ +
Sbjct: 179 LLFSATMPPEVRKLTLETQTNPVTIQIGTQAPASSV----SHSVYPVKNHQKTPLLIEIL 234
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T T V+IF+ TK A L A A L GNL+Q +R +E FR+ + L+
Sbjct: 235 KTTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILV 294
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ATD+AARGLDI + VINY P Y HR+GRT R R G A++ VT D +++ I
Sbjct: 295 ATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDI 354
Query: 486 AKRAGSKLK 494
K S ++
Sbjct: 355 QKLINSPIQ 363
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 134/371 (36%), Positives = 198/371 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L+ +L+A A GY++PTP+QAA +P AL D+ +A TG+GKTAAF LP L+
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
Query: 186 RLLYRPK---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RL P+ R P RVL+LTPTRELA QV + F +R ++GG+ Q
Sbjct: 62 RLSSPPQGPGRGP--RVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRL 119
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L + D +VATPGR++D L + S R+L++GFS ++ + P
Sbjct: 120 LSAPVDFIVATPGRLVD-LLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPAT 178
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LF+AT+ + L L +P R+ D + + + ++ +L
Sbjct: 179 RQTLLFTATMDSAMARLAGRLLREPERI--DIAGTKTTHEHIEQRLHVADDLHHKNRLLR 236
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L + + IIFS TK+ A L + AA LHG++ Q R + ++ +
Sbjct: 237 HLITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIR 296
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARGLD+ G+ VIN+ P+ YVHR+GRT RAG G A++F + N+ + L
Sbjct: 297 LLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYL 356
Query: 483 KAIAKRAGSKL 493
I + G L
Sbjct: 357 ARIERYIGQTL 367
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 537 (194.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 126/362 (34%), Positives = 194/362 (53%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + S P ++A + +G++K T +QA IP L GRD+ G+A TGSGKT AF +P +E
Sbjct: 110 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE- 168
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LLY K P V+I+TPTRELA+Q+ + ++ QF C +V+GG + + T L
Sbjct: 169 LLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLA 228
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRR 303
+++VATPGR++DHL+N+ R+LE+GF E+ +++++ P + R
Sbjct: 229 KGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENR 287
Query: 304 QTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
Q+MLFSAT T V++L ++SL PL ++ P K ST + +L
Sbjct: 288 QSMLFSATQTTKVEDLARISLRPGPLYINVVPE-KDVSTADGLEQGYVVCDSDKRFLLLF 346
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
S + K+I+F + + L L +LHG Q +R F
Sbjct: 347 SFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSL 481
L+ TDVAARGLDI V ++ + P D Y+HRVGRTAR + +G ++ F+T ++
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 466
Query: 482 LK 483
L+
Sbjct: 467 LR 468
Score = 41 (19.5 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 68 KITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFS 105
++TK VP DND+ D D ED E+ D FS
Sbjct: 85 QLTKPQVSNEVP--DNDNDD---DSSEDVLFENAD-FS 116
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 537 (194.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 126/362 (34%), Positives = 194/362 (53%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + S P ++A + +G++K T +QA IP L GRD+ G+A TGSGKT AF +P +E
Sbjct: 110 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE- 168
Query: 187 LLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LLY K P V+I+TPTRELA+Q+ + ++ QF C +V+GG + + T L
Sbjct: 169 LLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLA 228
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRR 303
+++VATPGR++DHL+N+ R+LE+GF E+ +++++ P + R
Sbjct: 229 KGVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENR 287
Query: 304 QTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
Q+MLFSAT T V++L ++SL PL ++ P K ST + +L
Sbjct: 288 QSMLFSATQTTKVEDLARISLRPGPLYINVVPE-KDVSTADGLEQGYVVCDSDKRFLLLF 346
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
S + K+I+F + + L L +LHG Q +R F
Sbjct: 347 SFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSL 481
L+ TDVAARGLDI V ++ + P D Y+HRVGRTAR + +G ++ F+T ++
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 466
Query: 482 LK 483
L+
Sbjct: 467 LR 468
Score = 41 (19.5 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 68 KITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFS 105
++TK VP DND+ D D ED E+ D FS
Sbjct: 85 QLTKPQVSNEVP--DNDNDD---DSSEDVLFENAD-FS 116
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 140/387 (36%), Positives = 203/387 (52%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
AS SF EL + PL LGY PTP+QAA IP L+GRD+ A TGSGKTAAF
Sbjct: 4 ASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAF 63
Query: 180 ALPTLERLLYRP---KRIPAIRVLILTPTRELAVQV-HSMIEKIAQFT-DIRCCLVVGGL 234
ALP L+RL K +R L+L PTRELA QV S + + F ++ GG+
Sbjct: 64 ALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGV 123
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHE 294
S +Q +LR+ D++VATPGR++D L ++ + R+L LGF+ E+ +
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQ 182
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXX 354
++ P+++QT+LFSAT E+V L L +PL +++ ST+
Sbjct: 183 VLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQ--SEQESTIEQRVITVNRE-- 238
Query: 355 XNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + S+ +IF K + L + A HG+ Q R L+
Sbjct: 239 -QKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLD 297
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ + LIATD+AARG+DI + VIN+ PR Y+HR+GR+ RAG G AVT +
Sbjct: 298 GFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357
Query: 475 TDNDRSLLKAIAKRAGSKLKSRIVAEQ 501
+ + I K+ +K+K +V EQ
Sbjct: 358 SHEEYHHFGVIEKK--NKIK--LVREQ 380
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 140/387 (36%), Positives = 203/387 (52%)
Query: 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179
AS SF EL + PL LGY PTP+QAA IP L+GRD+ A TGSGKTAAF
Sbjct: 4 ASSSVASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAF 63
Query: 180 ALPTLERLLYRP---KRIPAIRVLILTPTRELAVQV-HSMIEKIAQFT-DIRCCLVVGGL 234
ALP L+RL K +R L+L PTRELA QV S + + F ++ GG+
Sbjct: 64 ALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGV 123
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHE 294
S +Q +LR+ D++VATPGR++D L ++ + R+L LGF+ E+ +
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASN-ALKLTQVSAFVLDEADRMLSLGFTEELEQ 182
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXX 354
++ P+++QT+LFSAT E+V L L +PL +++ ST+
Sbjct: 183 VLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQ--SEQESTIEQRVITVNRE-- 238
Query: 355 XNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ A+L L + S+ +IF K + L + A HG+ Q R L+
Sbjct: 239 -QKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLD 297
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ + LIATD+AARG+DI + VIN+ PR Y+HR+GR+ RAG G AVT +
Sbjct: 298 GFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357
Query: 475 TDNDRSLLKAIAKRAGSKLKSRIVAEQ 501
+ + I K+ +K+K +V EQ
Sbjct: 358 SHEEYHHFGVIEKK--NKIK--LVREQ 380
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 393 (143.4 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 88/251 (35%), Positives = 140/251 (55%)
Query: 89 EFDQHEDYKPEDEDDFSNAGDTKSFFAPADGAS--FHANSFMELNLSRPLLRACEALGYS 146
E +E +D+DD S S+F + + A SF L++ +L GY
Sbjct: 64 ELSDNEGNNDDDDDDDSKIN---SYFINNNPTAKKAKAGSFASFGLTKFILANIAKKGYK 120
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206
+PTPIQ IPL + GRD+ G A TGSGKTAAF LP +ERL + ++ +R +IL+P+R
Sbjct: 121 QPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL--KSRQPGGVRAVILSPSR 178
Query: 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266
ELA+Q + +++ + T+++ +++GG S + + + + PDI+V TPGR + HL+ M
Sbjct: 179 ELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFL-HLKVEMQ 237
Query: 267 XXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK 326
RL E+GF+ +++EL+ P RQ++LFSATL + + K LT
Sbjct: 238 YDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQSLLFSATLPRSLVDFAKAGLTN 297
Query: 327 PLRLSADPSAK 337
P+ + D +K
Sbjct: 298 PVLVRLDAESK 308
Score = 178 (67.7 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 43/120 (35%), Positives = 62/120 (51%)
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
I+F TK + L A + ++G L Q R L FR + L+ TDVAARG
Sbjct: 398 IVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVTDVAARG 457
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+DI + VIN+ P ++HRVGRTARAG +G+A + V + + L + G K+
Sbjct: 458 IDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKKI 517
Score = 43 (20.2 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 82 DNDHSDSEFDQHEDYKPE 99
++D+SDS ++ ED++ E
Sbjct: 18 EDDYSDSSSNEGEDFQDE 35
Score = 40 (19.1 bits), Expect = 2.2e-53, Sum P(3) = 2.2e-53
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 86 SDSE-FDQHEDYKPEDEDDFSNAGDTK 111
SD E FD +DEDD+S++ +
Sbjct: 2 SDDEAFDIAGSLALKDEDDYSDSSSNE 28
Score = 38 (18.4 bits), Expect = 4.2e-39, Sum P(3) = 4.2e-39
Identities = 23/111 (20%), Positives = 41/111 (36%)
Query: 467 EGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXX 526
E A TF DND + K K + + +S K II + ++ A +
Sbjct: 754 EAQAATFDLDNDDKIQTNKQVMRWDKKKGKYINSKSTDK-KYIISENGTKIPASFRSGKF 812
Query: 527 XXILRKAEMEATK-----AENMIAHKEEIFAR-PKRTWFVTEKEKKLAVKA 571
++ ++ T + HK++ + P + K+KK KA
Sbjct: 813 DEWRKQRNLKPTSTVEDDSNKRFKHKQQRAPKLPDKFRDDYHKQKKKVEKA 863
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 144/397 (36%), Positives = 203/397 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L L ++ A A GY +P+ IQ IP+ L G D+ G A TG+GKTAAFALP L R
Sbjct: 8 FAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHR 67
Query: 187 LLYRP-KRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDIRCCLVVGGLSTKMQETALR 244
+ P KR P + LIL PTRELA+QV + E A Q + V GG Q A+R
Sbjct: 68 I--DPSKREP--QALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
+ IVVATPGR+ DHLR +L+LGF ++ + + P+ RQ
Sbjct: 124 NGAQIVVATPGRLCDHLRRD-EKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSATL + + + + L P + + T+T + + +LSL
Sbjct: 183 TVLFSATLPQSIRAIAERHLKDPKHVKIQ---SKTQTVTAIEQAHLLVHADQKTSAVLSL 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+I+F TKQA L KAA L+G++ Q QR ++ + +D +
Sbjct: 240 LEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIV 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLD+ + V N P D SYVHR+GRT RAGREG A+ VT +R +L+
Sbjct: 300 VATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 359
Query: 485 IAKRAGSKLKS-RIVAEQSI--TKWSKIIEQMEDQVA 518
I + G K+ R+ Q++ + K+ + VA
Sbjct: 360 IERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVA 396
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 132/367 (35%), Positives = 184/367 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ELNL+ +L+A E GY PTPIQA IP AL GRD+ G A TG+GKTA+F LP +
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L R R L+L PTRELA QV + + + L++GG+S K Q+ +
Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 306
D+++ATPGR++DH R+L++GF +I + L P RQT+
Sbjct: 124 VDVLIATPGRLLDHFERG-KLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL----TXXXXXXXXXXXXNQEAVLL 362
FSAT+ +++ + L+ P R+ A T+ + AVL
Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLR 242
Query: 363 SLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
+L + IIF K + AA +HG+L Q+QR L+ FR+
Sbjct: 243 ALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGK 302
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+A+DVAARGLD+ V V N+ P YVHR+GRT RAGR+G A+T D
Sbjct: 303 LRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEK 362
Query: 481 LLKAIAK 487
L AI K
Sbjct: 363 ALDAIEK 369
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 529 (191.3 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 131/383 (34%), Positives = 196/383 (51%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF E+ +LR + G +PTPIQ IP L+GRD+ G A TGSGKT F LP +
Sbjct: 178 SFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 237
Query: 186 RLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIE---KIAQ---FTDIRCCLVVGGL 234
L + KR+P + LI+ P+RELA Q H +IE ++ Q +RC L +GG+
Sbjct: 238 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGM 297
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHE 294
S K Q ++ ++VATPGR++D L+ M R++++GF +I
Sbjct: 298 SVKEQMETIKHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDMGFEGDIRT 356
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXX 354
+ +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 357 IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVG----RAGAASLDVVQEVEYVK 412
Query: 355 XNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ V L C + V+IF+ K + L ++A +HG Q +R +A+E
Sbjct: 413 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIE 472
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
FR D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G G A TF+
Sbjct: 473 AFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 532
Query: 475 TDN-DRSLL---KAIAKRAGSKL 493
D S+L KA+ A K+
Sbjct: 533 NKACDESVLMDLKALLLEAKQKV 555
Score = 38 (18.4 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 79 PIVDNDHSDSEFDQHEDYKPEDEDDF 104
P+V + E D ED++D+
Sbjct: 4 PLVSSQRQREEAADGSDMSGEDDEDY 29
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 131/372 (35%), Positives = 201/372 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L LL LG + PTPIQ IP L G+D+ A TG+GKTAAF LP ++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 186 RLLYRPKRIPA----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
R + +P + A IR L+L PTRELA QV ++ A+ T+++ V GG S K+Q
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
LR DI++ATPGR++DH + S R+L++GF ++ ++R
Sbjct: 127 HLRGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT+ FSAT + + + P+ + PS T+ +E +
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR--KRELLS 243
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ SK + +V++F+ T+Q + L L +KA ++G+ +Q R +AL+ F+ V
Sbjct: 244 YLIGSKNW-QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
LIATDVAARGLDI ++ V+NY P YVHR+GRT RAG G AV+ ++ +++
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
Query: 482 LKAIAKRAGSKL 493
L+AI + ++L
Sbjct: 363 LEAIERLLNTRL 374
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 131/372 (35%), Positives = 201/372 (54%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L LL LG + PTPIQ IP L G+D+ A TG+GKTAAF LP ++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 186 RLLYRPKRIPA----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
R + +P + A IR L+L PTRELA QV ++ A+ T+++ V GG S K+Q
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
LR DI++ATPGR++DH + S R+L++GF ++ ++R
Sbjct: 127 HLRGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT+ FSAT + + + P+ + PS T+ +E +
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR--KRELLS 243
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ SK + +V++F+ T+Q + L L +KA ++G+ +Q R +AL+ F+ V
Sbjct: 244 YLIGSKNW-QQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
LIATDVAARGLDI ++ V+NY P YVHR+GRT RAG G AV+ ++ +++
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
Query: 482 LKAIAKRAGSKL 493
L+AI + ++L
Sbjct: 363 LEAIERLLNTRL 374
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 129/365 (35%), Positives = 197/365 (53%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L L++A LGY PTPIQ IP L G+++ +A TG+GKTA+F LP L R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 187 LLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
PK P +R +ILTPTRELA+QV I + A++ + + GG+ Q+ L
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
D++VATPGR++D + + R+L++GF +I+ ++ P++RQ
Sbjct: 123 GVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSATL++ V L K ++ P + + S K ++ T + A+L L
Sbjct: 182 LLFSATLSKQVKALAKTAI--PDAIEIEISRKNAAS-TQIDQWLTTVDKDRKSALLSHLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ ++ +IF TK A +L + A H +QA R + L F+ V FL+
Sbjct: 239 KENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
AT V +RG+DI ++ VINY P + Y+HR+GRT RAG +G A++FV+ +D L AI
Sbjct: 299 ATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAI 358
Query: 486 AKRAG 490
+R G
Sbjct: 359 ERRLG 363
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 129/365 (35%), Positives = 197/365 (53%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L L++A LGY PTPIQ IP L G+++ +A TG+GKTA+F LP L R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 187 LLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
PK P +R +ILTPTRELA+QV I + A++ + + GG+ Q+ L
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
D++VATPGR++D + + R+L++GF +I+ ++ P++RQ
Sbjct: 123 GVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSATL++ V L K ++ P + + S K ++ T + A+L L
Sbjct: 182 LLFSATLSKQVKALAKTAI--PDAIEIEISRKNAAS-TQIDQWLTTVDKDRKSALLSHLI 238
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
+ ++ +IF TK A +L + A H +QA R + L F+ V FL+
Sbjct: 239 KENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLV 298
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
AT V +RG+DI ++ VINY P + Y+HR+GRT RAG +G A++FV+ +D L AI
Sbjct: 299 ATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAI 358
Query: 486 AKRAG 490
+R G
Sbjct: 359 ERRLG 363
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 158/454 (34%), Positives = 228/454 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L +S L+ +AL +PT IQ I L GR+ G A TGSGKTAAFALP +E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+ P I A LILTPTRELA+Q+ + +++ L+VGG+ Q L
Sbjct: 68 KWSKDPSGIFA---LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSK 124
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXX---XXRLLELGFSAEIHELVRLCP-- 300
P +VVATPGR+ D +R++ RLL F+ ++ + + P
Sbjct: 125 RPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPAS 184
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTK----PLRLSA--DPSAKRPSTLTXXXXXXXXXXX 354
+ RQT+LF+AT+T+ + +L K K PL L + PSTL
Sbjct: 185 EDRQTLLFTATVTDAIRQL-KYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQV- 242
Query: 355 XNQEAVLLSLCSKTFTSK--VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
+EA L+ L + +K IIF + A + + L L+ ELH + Q +R+ +
Sbjct: 243 --REAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINS 300
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L FR + L+ATDVA+RGLDI VQ VIN+ PRD Y+HRVGRTARAGR G +++
Sbjct: 301 LGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESIS 360
Query: 473 FVTDNDRSLLKAIAKRAGSKLKS-RIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILR 531
VT+ D L+ AI R G+KL V+E + ++ K + + Q A++ R
Sbjct: 361 IVTERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQ-ASLEMIDRGFGERR 419
Query: 532 KAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 565
+ E N I++K + R K+ EK
Sbjct: 420 QKRNEKRLMANGISNKLKNSGRKKKAKNTLSTEK 453
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 136/364 (37%), Positives = 190/364 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L L+ E +G+++PT IQ IP A+ G D+ S+ TGSGKT AF +P L+R
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 187 LLYR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L KR P RV+ILTPTRELA QV S + T + L++GG + Q L
Sbjct: 63 LSKNRALSKRDP--RVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR- 302
+ P+ +VATPGR+ DHL R+L+LGFS E+ ++ + R
Sbjct: 121 QKEPEFIVATPGRLADHLTQG-HFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRK 179
Query: 303 RQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT+LFSATL V+E LTKP R++ + A + +EA+L
Sbjct: 180 RQTLLFSATLDHAQVNEFATELLTKPKRIAIN--AGHSEHVDIAKRFYLADNLTQKEALL 237
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ ++IIF+ T+ RL L L A L G L Q QR + +E F K
Sbjct: 238 QHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQH 297
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ TD+A+RGLD+I V VIN+ P+ +VHR+GRT RAG +G A++ V ND
Sbjct: 298 KILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLS 357
Query: 482 LKAI 485
LK +
Sbjct: 358 LKNV 361
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 131/376 (34%), Positives = 203/376 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L LL A E +G+S+PT +QA IP AL GRD+ SA TG+GKTAAF +P L+
Sbjct: 4 TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Query: 186 RLLYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL P+R PA R+LILTPTRELA+QV + +A+ T + + GG+ + L
Sbjct: 64 YLLDFPRRKAGPA-RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADIL 122
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ DIVVATPGR+++++ ++ R+L++GF + L C R+
Sbjct: 123 ATTQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
Query: 304 QTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
QT+LFSATL E L K P + A+P + ++ + LL
Sbjct: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMP---HKVELL 238
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ I+F T++ L+ A + A + G + Q +R A+ FR+ V+
Sbjct: 239 KKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVN 298
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARG+D+ + VIN+ PR Y+HR+GRT RAG++G A++ V +D+ ++
Sbjct: 299 ILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMM 358
Query: 483 KAIAKRAGSKLKSRIV 498
+ + ++K R +
Sbjct: 359 ARVERYIKEEVKERFI 374
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 136/364 (37%), Positives = 190/364 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L L+ E +G+++PT IQ IP A+ G D+ S+ TGSGKT AF +P L+R
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 187 LLYR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L KR P RV+ILTPTRELA QV S + T + L++GG + Q L
Sbjct: 63 LSKNRALSKRDP--RVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR- 302
+ P+ +VATPGR+ DHL R+L+LGFS E+ ++ + R
Sbjct: 121 QKEPEFIVATPGRLADHLTQG-HFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRK 179
Query: 303 RQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT+LFSATL V+E LTKP R++ + A + +EA+L
Sbjct: 180 RQTLLFSATLDHAQVNEFATELLTKPKRIAIN--AGHSEHVDIAKRFYLADNLTQKEALL 237
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+ ++IIF+ T+ RL L L A L G L Q QR + +E F K
Sbjct: 238 QHFLVTEKSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQH 297
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ TD+A+RGLD+I V VIN+ P+ +VHR+GRT RAG +G A++ V ND
Sbjct: 298 KILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLS 357
Query: 482 LKAI 485
LK +
Sbjct: 358 LKNV 361
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 131/376 (34%), Positives = 203/376 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F +L L LL A E +G+S+PT +QA IP AL GRD+ SA TG+GKTAAF +P L+
Sbjct: 4 TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Query: 186 RLLYRPKRI--PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL P+R PA R+LILTPTRELA+QV + +A+ T + + GG+ + L
Sbjct: 64 YLLDFPRRKAGPA-RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADIL 122
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ DIVVATPGR+++++ ++ R+L++GF + L C R+
Sbjct: 123 ATTQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRK 181
Query: 304 QTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
QT+LFSATL E L K P + A+P + ++ + LL
Sbjct: 182 QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMP---HKVELL 238
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ I+F T++ L+ A + A + G + Q +R A+ FR+ V+
Sbjct: 239 KKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVN 298
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATDVAARG+D+ + VIN+ PR Y+HR+GRT RAG++G A++ V +D+ ++
Sbjct: 299 ILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMM 358
Query: 483 KAIAKRAGSKLKSRIV 498
+ + ++K R +
Sbjct: 359 ARVERYIKEEVKERFI 374
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 512 (185.3 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 128/409 (31%), Positives = 209/409 (51%)
Query: 77 SVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPL 136
S I D+D +D + ++ K + D +N ++K F + F ELN+ L
Sbjct: 111 SEEICDHDKNDKTYT--DEIKSNNSDHNNN--NSKEHF-------YSELKFEELNICDAL 159
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 195
+ + L + T IQA CIP L+G+DI G+A TGSGKT AF +P++ +LY K +P
Sbjct: 160 KKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSIN-ILYNIKFLPK 218
Query: 196 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
VLI++PTREL +Q++ + + + ++ +++GG+S ++ +I++ATP
Sbjct: 219 NGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIATP 278
Query: 255 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314
GR++DH++N+ RLL++GF EI+ +++ PK+RQT LFSAT T
Sbjct: 279 GRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTALFSATQTT 338
Query: 315 DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVI 374
V+ LI+LSL KP+ + + +T+ + +L + K + K++
Sbjct: 339 KVESLIRLSLQKPIFIEV---TTKIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIM 395
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F + L + +HG Q +RL++ F L+ T+VAARGL
Sbjct: 396 VFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGL 455
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLL 482
DI V +I Y P D Y+HRVGRT R G A+ F+ ++ L
Sbjct: 456 DIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504
Score = 51 (23.0 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 45 DFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDF 104
D+ S +D + ++ T + I K +++ I++N S+ + ++E+Y+ E E +
Sbjct: 7 DYNTMKNS-NDNNLKK--TKKNSIIKKKKKKKKKEILENKDSNIDNLKNENYRSESEAES 63
Query: 105 SNAGDTKS 112
+ D+ S
Sbjct: 64 ESTNDSVS 71
Score = 41 (19.5 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 13/73 (17%), Positives = 36/73 (49%)
Query: 34 KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQH 93
K K+ K+ + + +++ +E++R + + S+ S+ ++ D+ +E ++
Sbjct: 31 KKKKKKKEILENKDSNIDNLKNENYRSESEAESESTNDSV---SLNNIEEDNELNENSEN 87
Query: 94 EDYKPEDEDDFSN 106
+ DED+ +N
Sbjct: 88 NENNENDEDNKNN 100
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 512 (185.3 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 128/409 (31%), Positives = 209/409 (51%)
Query: 77 SVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPL 136
S I D+D +D + ++ K + D +N ++K F + F ELN+ L
Sbjct: 111 SEEICDHDKNDKTYT--DEIKSNNSDHNNN--NSKEHF-------YSELKFEELNICDAL 159
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 195
+ + L + T IQA CIP L+G+DI G+A TGSGKT AF +P++ +LY K +P
Sbjct: 160 KKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSIN-ILYNIKFLPK 218
Query: 196 -AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254
VLI++PTREL +Q++ + + + ++ +++GG+S ++ +I++ATP
Sbjct: 219 NGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIHGINILIATP 278
Query: 255 GRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314
GR++DH++N+ RLL++GF EI+ +++ PK+RQT LFSAT T
Sbjct: 279 GRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTALFSATQTT 338
Query: 315 DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVI 374
V+ LI+LSL KP+ + + +T+ + +L + K + K++
Sbjct: 339 KVESLIRLSLQKPIFIEV---TTKIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIM 395
Query: 375 IFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434
+F + L + +HG Q +RL++ F L+ T+VAARGL
Sbjct: 396 VFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGL 455
Query: 435 DIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLL 482
DI V +I Y P D Y+HRVGRT R G A+ F+ ++ L
Sbjct: 456 DIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504
Score = 51 (23.0 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 45 DFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDF 104
D+ S +D + ++ T + I K +++ I++N S+ + ++E+Y+ E E +
Sbjct: 7 DYNTMKNS-NDNNLKK--TKKNSIIKKKKKKKKKEILENKDSNIDNLKNENYRSESEAES 63
Query: 105 SNAGDTKS 112
+ D+ S
Sbjct: 64 ESTNDSVS 71
Score = 41 (19.5 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 13/73 (17%), Positives = 36/73 (49%)
Query: 34 KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQH 93
K K+ K+ + + +++ +E++R + + S+ S+ ++ D+ +E ++
Sbjct: 31 KKKKKKKEILENKDSNIDNLKNENYRSESEAESESTNDSV---SLNNIEEDNELNENSEN 87
Query: 94 EDYKPEDEDDFSN 106
+ DED+ +N
Sbjct: 88 NENNENDEDNKNN 100
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 140/426 (32%), Positives = 217/426 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL + +A+G+ PT IQ +P AL RDI A TG+GKTA+F LP L+
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 187 LLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ P+R RVLILTPTRELA Q+H +A + ++ GG+ QE AL+
Sbjct: 63 LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++++L R+L++GFSA + + R+Q
Sbjct: 123 NIDILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181
Query: 306 MLFSATLT-EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
MLFSATL V + L P+ + D K + + ++ A+L L
Sbjct: 182 MLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI--HQWIHLADDKDHKFALLCHL 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + I+F T+ L+ A + A + G++ Q +R +AL F K V+ L
Sbjct: 240 LKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARG+DI + VIN+ PR +Y+HR+GRT RAG +G A++ +D ++
Sbjct: 300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359
Query: 485 IAKRAGSKLKSRIVAE-QSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENM 543
I + LK RI+ E + K +++ + + +V A + ++ EA K +
Sbjct: 360 IERYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKA------KEAAKKTSKKEAAKKASK 413
Query: 544 IAHKEE 549
IA K++
Sbjct: 414 IARKKQ 419
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 142/377 (37%), Positives = 195/377 (51%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L PLL L Y +PTPIQA IP GRD+ A TGSGKTA FALP L+
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 186 RLLY------RPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFT-DIRCCLVVGGLSTK 237
+L + + + L+L PTRELA QV I+ A F +I+ V GG+S
Sbjct: 69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVN 128
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 297
+Q ALR DI+VATPGR++D L +S + R+L LGF+ E+ L+
Sbjct: 129 IQMLALRGGVDILVATPGRLLD-LISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLA 187
Query: 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQ 357
L PK++QT+LFSAT E V L + L P+ + SA STL +
Sbjct: 188 LTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQ-SADA-STLVQRVFTVNKG---EK 242
Query: 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
AVL L + + +IF K L + AA HG+ Q++R L+ F+
Sbjct: 243 TAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFK 302
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
++ LIATD+AARGLDI + VIN+ PR + Y+HR+GR+ RAG G A++ +
Sbjct: 303 AGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHE 362
Query: 478 DRSLLKAIAKRAGSKLK 494
D I K+ +LK
Sbjct: 363 DYHHFSVIEKKNKFRLK 379
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 140/426 (32%), Positives = 217/426 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL + +A+G+ PT IQ +P AL RDI A TG+GKTA+F LP L+
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 187 LLYRPKRIPA-IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ P+R RVLILTPTRELA Q+H +A + ++ GG+ QE AL+
Sbjct: 63 LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
DI+VATPGR++++L R+L++GFSA + + R+Q
Sbjct: 123 NIDILVATPGRLMEYLDKG-KFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181
Query: 306 MLFSATLT-EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
MLFSATL V + L P+ + D K + + ++ A+L L
Sbjct: 182 MLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI--HQWIHLADDKDHKFALLCHL 239
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + I+F T+ L+ A + A + G++ Q +R +AL F K V+ L
Sbjct: 240 LKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARG+DI + VIN+ PR +Y+HR+GRT RAG +G A++ +D ++
Sbjct: 300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359
Query: 485 IAKRAGSKLKSRIVAE-QSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENM 543
I + LK RI+ E + K +++ + + +V A + ++ EA K +
Sbjct: 360 IERYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKA------KEAAKKTSKKEAAKKASK 413
Query: 544 IAHKEE 549
IA K++
Sbjct: 414 IARKKQ 419
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 530 (191.6 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 134/383 (34%), Positives = 207/383 (54%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F +L +S+ L+A + K T IQ A +P L GRDI G+A TGSGKT +F LP
Sbjct: 140 ATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPI 199
Query: 184 LERLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
LE L +R + R I ++L+PTRELA+Q+ +++ + ++ L++GG + + ++
Sbjct: 200 LETL-WRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKD 258
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
+ +M +I++ATPGR++ H+ + R+L+LGFS ++ +V P+
Sbjct: 259 KINAM-NILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPR 317
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS--AKRPSTLTXXXXXXXXXXXXNQEA 359
RQT+LFSAT T+ + +L +LSL +P +S P LT N
Sbjct: 318 ERQTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLN--- 374
Query: 360 VLLSLCSKTFTSKVIIF-SGTKQA--AHR-LKILFGLAALKAAELHGNLTQAQRLEALEL 415
+L S TSK+I+F + KQ AH K+L L LHG + Q RLE E
Sbjct: 375 MLFSFIKTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTL--FPLHGKMKQWTRLEVFED 432
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F K+ L ATD+AARGLD V+ VI CP D+ +Y+HRVGRTAR G ++T +
Sbjct: 433 FCKKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILL 492
Query: 476 DNDRSLLKAIAKRAGSKLKSRIV 498
+++ + + ++ K+K I+
Sbjct: 493 PSEKDGMVNLMEK--QKMKFEIL 513
Score = 42 (19.8 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 478 DRSLLKAIAKRAGSKLKSRIVAEQS 502
D+ LLK KR KL+S+ + +QS
Sbjct: 766 DKILLKERLKRKKLKLQSKELRKQS 790
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 146/389 (37%), Positives = 199/389 (51%)
Query: 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178
G + NSF LN++ L+ + + KPT IQ ACIP L GRD G + TGSGKT A
Sbjct: 89 GLNAEENSFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIA 148
Query: 179 FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238
F++P L++ P I A+ ILTPTRELA+Q+ I+ I+ ++ L+ GG +
Sbjct: 149 FSVPILQKWAEDPFGIFAV---ILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRS 205
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXX---XXRLLELGFSAEIHEL 295
Q L P +VVATPGR+ DH+ S + RLL G + + +
Sbjct: 206 QAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPD- 264
Query: 296 VRLC------PKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTXXXX 347
V C P +RQT+LF+ATLT +V L + T KP + S + T+
Sbjct: 265 VETCLSFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLR 324
Query: 348 XXXXXX-XXNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404
++EA L L S T I+F+ T ++A L+ L + LH L
Sbjct: 325 TTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLL 384
Query: 405 TQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464
Q++R L FR L+ATDVA+RGLDI V V+N+ PR+ YVHRVGRTARA
Sbjct: 385 PQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARA 444
Query: 465 GREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
GR G AVT V D L+ AI +R G K+
Sbjct: 445 GRTGEAVTLVGQRDVQLVLAIEERIGRKM 473
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 134/375 (35%), Positives = 201/375 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L LS L++ LGY KPT IQ IP+ L GRD+ +A TG+GKTA+F LP LE
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+L + +R +R LIL PTRELA+QV +E+ + T ++ V GG+ + Q+ L
Sbjct: 62 KLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L + R+L++GF I++++ P Q
Sbjct: 122 DGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
+LFSATL+ V EL K ++ P +S + S ++ + A+L L
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDT---KSALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ + +IF TK A +L + A H +QA R + LE F+ + +L
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDRSLLK 483
+AT VAARG+DI + V+NY P YVHR+GRT RA G A++FV+ DN ++L
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357
Query: 484 AIAKRAGSKLKSRIV 498
I R G ++ R+V
Sbjct: 358 -IESRLGHLIERRVV 371
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 134/375 (35%), Positives = 201/375 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L LS L++ LGY KPT IQ IP+ L GRD+ +A TG+GKTA+F LP LE
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 186 RLLY-RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+L + +R +R LIL PTRELA+QV +E+ + T ++ V GG+ + Q+ L
Sbjct: 62 KLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLI 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
D++VATPGR++D L + R+L++GF I++++ P Q
Sbjct: 122 DGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
+LFSATL+ V EL K ++ P +S + S ++ + A+L L
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDT---KSALLSHL 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
++ + +IF TK A +L + A H +QA R + LE F+ + +L
Sbjct: 238 INEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDRSLLK 483
+AT VAARG+DI + V+NY P YVHR+GRT RA G A++FV+ DN ++L
Sbjct: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357
Query: 484 AIAKRAGSKLKSRIV 498
I R G ++ R+V
Sbjct: 358 -IESRLGHLIERRVV 371
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 132/371 (35%), Positives = 190/371 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+ F L L+ +L + GY+ PTPIQ IPL + GRDI G A TG+GKT AFA P L
Sbjct: 7 SDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPIL 66
Query: 185 ERLLYR--PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+RL P + RVL+L PTRELA Q+ + ++R +V GG Q
Sbjct: 67 DRLSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQ 126
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L I+VATPGR+ID L + ++L+LGF + + + P +
Sbjct: 127 LERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSK 185
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+ FSAT+ + V+ L L P +S P A +T + ++L+
Sbjct: 186 RQTLFFSATMPKAVESLAATFLRNPAEVSVAPPA---TTAGRIEQRVCFVEQPEKASLLI 242
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
I+F+ TK A + A + + +HGN +Q+QR +ALE F+ V
Sbjct: 243 EKIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVP 302
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ATD+AARG+ + + VINY P +VHR+GRTARAG G A++F + ++R L
Sbjct: 303 ILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTL 362
Query: 483 KAIAKRAGSKL 493
+AI K G KL
Sbjct: 363 RAIEKLTGLKL 373
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 148/477 (31%), Positives = 239/477 (50%)
Query: 50 SESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDED-DFSNAG 108
+E V ++ R++ D KI + L Q + + + + DQ+ + E E+ D N
Sbjct: 15 NEEVKEK--RQKPLKNDKKIAEELPQDEDDY-EQEEENEDADQNTSVESESEELDNENED 71
Query: 109 DT--KSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDIC 166
+ KS A S F +L LS + +A + +G+ T IQ IP L GRD+
Sbjct: 72 ERVQKSVNLNASSTS-DIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVL 130
Query: 167 GSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTD 224
G+A TGSGKT AF +PT+E +LY K P V+I++PTRELA+Q+ + +++ ++
Sbjct: 131 GAAKTGSGKTLAFLIPTIE-MLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHH 189
Query: 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLL 284
+V+GG + + + L +++VATPGR++DHL+N+ R+L
Sbjct: 190 QTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRIL 249
Query: 285 ELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTL 342
E+GF E+ +++++ P + RQT+LFSAT T V++L ++SL PL ++ D S K ST+
Sbjct: 250 EIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVNVD-SGKPTSTV 308
Query: 343 TXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402
+ +L S + KVI+F + + + L L +LHG
Sbjct: 309 EGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHG 368
Query: 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462
Q +R F L+ T+VAARGLDI V ++ Y P D Y+HRVGRTA
Sbjct: 369 KQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTA 428
Query: 463 RAGR-EGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVA 518
R + G ++ F+ ++ L+ + K A L E K + + Q+E V+
Sbjct: 429 RGTKGTGKSLMFLAPSELGFLRYL-KTAKVSLNE---FEFPANKVANVQSQLEKLVS 481
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 133/404 (32%), Positives = 206/404 (50%)
Query: 115 APADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSG 174
AP + F EL LS+P L+A E +G++ T +QA IP L GRD+ G+A TGSG
Sbjct: 32 APEGEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSG 91
Query: 175 KTAAFALPTLERLLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232
KT AF +P +E LL+ K P ++++TPTRELA+Q+ + ++ +F +V+G
Sbjct: 92 KTLAFLIPAIE-LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIG 150
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEI 292
G + + + L ++++ATPGR++DHL+N+ R+LE+GF E+
Sbjct: 151 GANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEM 210
Query: 293 HELVRLCPKR-RQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXX 350
+++++ P RQ+MLFSAT T V++L ++SL PL ++ P ST
Sbjct: 211 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDN-STADGLEQGYV 269
Query: 351 XXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
+ +L S + K+I+F + + L L ELHG Q +R
Sbjct: 270 VCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRT 329
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGY 469
F LI TDVAARGLDI V +I + P D Y+HRVGRTAR + +G
Sbjct: 330 NTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGK 389
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQM 513
++ F+T N+ L+ + K + L E I +E++
Sbjct: 390 SLMFLTPNELGFLRYL-KASKVPLNEYEFPENKIANVQSQLEKL 432
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 498 (180.4 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 139/430 (32%), Positives = 218/430 (50%)
Query: 97 KP-EDEDDFSNAGDTKSFFAPADGASFHANSFMELN--LSRPLLRACEALGYSKPTPIQA 153
KP +D++ F+ +S A D SF L +S LRA + +G+++ T IQ+
Sbjct: 160 KPAKDDEPFT----VESSLAALDYRDSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQS 215
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLE---RLLYRPKRIPAIRVLILTPTRELAV 210
+ L GRD+ G+A TGSGKT AF +P +E +L + P+ V+I++PTREL++
Sbjct: 216 KSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRN--GTGVIIISPTRELSM 273
Query: 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXX 270
Q +++++ LV+GG + +++ L +I+VATPGR++DHL+NS
Sbjct: 274 QTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYK 333
Query: 271 XXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL-TKPLR 329
R+LE+GF E+ +++ L PKRRQTMLFSAT T ++ L KL+L ++P+
Sbjct: 334 NLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSEPIY 393
Query: 330 LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 389
+ + + +T+ + VL + K KV++F + + L
Sbjct: 394 VGVHDN-QDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHEL 452
Query: 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 449
F L +HG Q +R F L+ TDVAARGLDI V ++ Y P
Sbjct: 453 FNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPD 512
Query: 450 DLTSYVHRVGRTAR-AGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
D Y+HRVGRTAR +G G+A+ + + L+ + K A L E S K +
Sbjct: 513 DPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYL-KAAKVPLNE---FEFSWQKIAD 568
Query: 509 IIEQMEDQVA 518
I Q+E +A
Sbjct: 569 IQLQLEKLIA 578
Score = 56 (24.8 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 34 KPSKRAKQSPWDFAAYSESVS-DEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQ 92
KPSK+ ++ A E +E F+ + + +++ + + ++D S+S+ D+
Sbjct: 43 KPSKKPEKLSKKHVAKDEDDDLEEDFQEAPLPKKKQQKQPPKKQQIQVANSD-SESDDDE 101
Query: 93 HEDYKPEDED 102
ED ED D
Sbjct: 102 QEDEADEDSD 111
Score = 43 (20.2 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 37 KRAKQSPWDF---AAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQH 93
K+ KQ P A S+S SD+ + D + + + V D D + DQ
Sbjct: 77 KQQKQPPKKQQIQVANSDSESDDDEQEDEADEDSDLDEVAE---VDEEDVDSGSEDDDQQ 133
Query: 94 EDYKPEDEDDFSNAGDTK 111
ED EDE++ A TK
Sbjct: 134 ED---EDEEEPVPAKKTK 148
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 133/375 (35%), Positives = 195/375 (52%)
Query: 114 FAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGS 173
++PA A+ +F +L + +LRA +GY PT IQAA IP + G D+ G A TG+
Sbjct: 6 YSPAASAA----TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGT 61
Query: 174 GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRCCLVVG 232
GKTAAFA+P L ++ K +P + L+L PTRELA+QV + A + + + G
Sbjct: 62 GKTAAFAIPMLSKIDITSK-VP--QALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYG 118
Query: 233 GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEI 292
G S +Q LR +VV TPGRMIDHL + + +L +GF+ ++
Sbjct: 119 GSSYAVQLAGLRRGAQVVVGTPGRMIDHLERA-TLDLSRVDFLVLDEADEMLTMGFADDV 177
Query: 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXX 352
++ P+ +Q LFSAT+ + +L L P ++ K + +
Sbjct: 178 ERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTC----KAKTAVAENISQSYIQ 233
Query: 353 XXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
+A+ L + F + +I+F TKQA + AA + G++ QAQR
Sbjct: 234 VARKMDALTRVLEVEPFEA-MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERT 292
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
+ R +D L+ATDVAARGLD+ + V+NY P D SYVHR+GRT RAGR G A+
Sbjct: 293 ITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALI 352
Query: 473 FVTDNDRSLLKAIAK 487
FV+ + LLKAI K
Sbjct: 353 FVSPRELHLLKAIEK 367
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 539 (194.8 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 135/383 (35%), Positives = 191/383 (49%)
Query: 98 PEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIP 157
P ED +A + A + F + LS P+ + GY PTPIQ IP
Sbjct: 9 PTAEDKDGDAAEDTQAMVRAQNKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIP 68
Query: 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217
+ L GRD+ A TGSGKTA F LP ERL P A R LIL+PTRELA+Q +
Sbjct: 69 VILRGRDVVAMARTGSGKTACFLLPMFERLK-APSPSGA-RALILSPTRELALQTLKFTK 126
Query: 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXX 277
++ +FT ++ LV+GG + Q AL PDI++ATPGR++ H+ M+
Sbjct: 127 ELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVF 185
Query: 278 XXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
RL E+GF+ ++ E++ P QT+LFSATL + + E + LT+P+ + D +K
Sbjct: 186 DEADRLFEMGFAEQLQEILARLPGSHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESK 245
Query: 338 RPSTLTXXXXXXXXXXXXNQEAVLLSL--CSKTFTSKVIIFSGTKQAAHRLKILFGLAAL 395
L ++ AVLL L C + ++F TK LK L +
Sbjct: 246 LSEQLKLAFFHVRGD---DKPAVLLHLLRCVVKPQDQTVVFVATKHHTEYLKELLTSQGI 302
Query: 396 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYV 455
++ +L Q R + F L+ TDVAARGLDI + VINY+ P ++
Sbjct: 303 CCTHIYSSLDQTARKINIAKFAHGKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFL 362
Query: 456 HRVGRTARAGREGYAVTFVTDND 478
HRVGR ARAGR G A + V ++
Sbjct: 363 HRVGRVARAGRSGTAYSLVAPDE 385
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 393 (143.4 bits), Expect = 1.8e-51, Sum P(2) = 1.8e-51
Identities = 102/304 (33%), Positives = 156/304 (51%)
Query: 39 AKQSPWDFAAYSESVSDE----HFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQH- 93
A P D E SDE + +++ + D K K+ ++ + SD E +
Sbjct: 50 ADYGPNDVQDVIEYSSDEEEGVNNKKKAENKDIKKKKNSKKEIAAFPMLEMSDDENNASG 109
Query: 94 EDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
+ +DEDD + T + + SF LS+ +L + G+ +PTPIQ
Sbjct: 110 KTQTGDDEDDVNEYFSTNNL----EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQR 165
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213
IPL L RDI G A TGSGKTAAF LP +E+L +I A R +IL+P+RELA+Q
Sbjct: 166 KTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGA-RAVILSPSRELAMQTF 224
Query: 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXX 273
++ + A+ T++R L+ GG S + Q + + PD+++ATPGR + HL+ M+
Sbjct: 225 NVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFL-HLKVEMNLDLKSVE 283
Query: 274 XXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333
RL E+GF +++EL+ P RQT+LFSATL + + +K L P+ + D
Sbjct: 284 YVVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLD 343
Query: 334 PSAK 337
K
Sbjct: 344 AETK 347
Score = 180 (68.4 bits), Expect = 1.8e-51, Sum P(2) = 1.8e-51
Identities = 44/120 (36%), Positives = 61/120 (50%)
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
I+F T+ + L + ++G L Q R L FR L+ TDVAARG
Sbjct: 436 ILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARG 495
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+DI + VINY P +VHRVGRTARAG +G+A + V +N+ L + G K+
Sbjct: 496 VDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKI 555
Score = 45 (20.9 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDD 103
++D +DS+ + DY P D D
Sbjct: 38 ESDANDSDSEVEADYGPNDVQD 59
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 132/366 (36%), Positives = 185/366 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F + L+ +L+A GY+ PTPIQ IP L G D+ G A TG+GKTAAF LP ++
Sbjct: 5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
RL R R LIL PTRELA QV EK ++ + L++GG+S K QET L+
Sbjct: 65 RLSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQR 124
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
D+++ATPGR++D R+L++GF +I ++ P RQT
Sbjct: 125 GVDVLIATPGRLMDQFDRG-KLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQT 183
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
+LFSAT D+ L K P ++ A+ T++ + L +
Sbjct: 184 LLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVI 243
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
T I+F K + AA +HG+L Q+ R E L+ FR + L+
Sbjct: 244 EATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLV 303
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRS---L 481
A+DVAARGLDI V V N+ P YVHR+GRT RAGR G + T VT +D+S +
Sbjct: 304 ASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFV 363
Query: 482 LKAIAK 487
+K I K
Sbjct: 364 VKMIKK 369
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 538 (194.4 bits), Expect = 2.1e-51, P = 2.1e-51
Identities = 128/359 (35%), Positives = 185/359 (51%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+ F + L L++ GY PTPIQ IPL L GRD+ A TGSGKTA F +P
Sbjct: 38 SGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPL 97
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
E+L R + R LIL+PTRELAVQ + I+++ +F +++ LV+GG S Q +A+
Sbjct: 98 FEKL-QRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAI 156
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ PD++VATPGR + HL M RL E+GF +++E + P R
Sbjct: 157 HTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR 215
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT++FSATL + + E + L P+ + D +K P L VLL
Sbjct: 216 QTVMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLK 275
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
S+ ++F+GT+ + + A + A ++ +L A R F + V
Sbjct: 276 YVIPV-QSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSV 334
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
LI TDVAARG+DI + V+N P +VHRVGR ARAGR G A + V+ +D + L
Sbjct: 335 LIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHL 393
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 150/437 (34%), Positives = 224/437 (51%)
Query: 95 DYKPEDE-DDFSNAGDTKSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQ 152
D P+ E D F + K A AD S SF L S L A G++ PT IQ
Sbjct: 42 DNVPQTEIDKFLSDHSIKITDASADKPSLRPIISFSFLPPSNKDLYA-PLDGFASPTAIQ 100
Query: 153 AACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL--ILTPTRELAV 210
+A PL GRD+ G A TGSGKT AF LP L+++L + + R L +++PTRELA+
Sbjct: 101 SATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAM 160
Query: 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXX 270
Q++ + K A+ DI+ + GG+ Q AL+S +VVATPGR+ D L+N S
Sbjct: 161 QIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKD-LQNDGSLDLG 218
Query: 271 XXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLR 329
R+L+ GF +I +++ P +RQT++F+AT V L +T P+
Sbjct: 219 RVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVT 278
Query: 330 LS--ADPSAK-RPSTLTXXXXXXXXXXXXNQEAV-LLSLCSKTFTSKVIIFSGTKQAAHR 385
++ DPSA R ++ Q V +L+ + KV+ F K+ A R
Sbjct: 279 VTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMR 338
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
++ L K A +HG+L+Q +R +LE F+ L+ATDVAARGLDI V+ V+N
Sbjct: 339 VERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNV 398
Query: 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITK 505
P + YVHR+GRT RAG +G+A+T T+ D++ A+ K ++ V E +
Sbjct: 399 TFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVL--KAANQEVPEALLKF 456
Query: 506 WSKIIEQMEDQVAAILQ 522
S + ++ D A +
Sbjct: 457 GSTVKKKQHDAYGAFFK 473
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 133/391 (34%), Positives = 197/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ L +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 174 DGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 233
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +R
Sbjct: 234 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLR 293
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R ++VATPGR++D L+ M R++++
Sbjct: 294 CALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 352
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 353 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 408
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 409 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 468
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 469 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 529 TGIATTFINKACDESVLMDLKALLLEAKQKV 559
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 537 (194.1 bits), Expect = 3.7e-51, P = 3.7e-51
Identities = 130/372 (34%), Positives = 190/372 (51%)
Query: 109 DTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
DT+ + + F + LS P+ + GY PTPIQ IP+ L G+D+
Sbjct: 62 DTRELVRAQNKKKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAM 121
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
A TGSGKTAAF +P E+L P+ R LILTPTRELA+Q +++ +FT +R
Sbjct: 122 ARTGSGKTAAFLVPLFEKLK-APQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTA 180
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGF 288
L++GG S Q AL PDI++ TPGR++ H+ M+ RL E+GF
Sbjct: 181 LILGGDSMDDQFAALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGF 239
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXX 348
+ ++ E++R P RQT+LFSATL + + E + LT+P+ + D K L
Sbjct: 240 AEQLQEIIRRLPDARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFS 299
Query: 349 XXXXXXXNQEAVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
++ A+LL L + ++F TK LK L + + ++ L Q
Sbjct: 300 LRLD---DKPALLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQ 356
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
R ++ F + V L+ TDVAARG+DI + VINY P ++HRVGR ARAGR
Sbjct: 357 TARKISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGR 416
Query: 467 EGYAVTFVTDND 478
G A + V ++
Sbjct: 417 GGTAYSLVCPDE 428
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/391 (33%), Positives = 196/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 174 DGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 233
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +R
Sbjct: 234 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLR 293
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R ++VATPGR++D L+ M R++++
Sbjct: 294 CALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 352
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 353 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 408
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 409 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 468
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 469 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 529 TGIATTFINKACDESVLMDLKALLLEAKQKV 559
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/391 (33%), Positives = 196/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 174 DGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 233
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +R
Sbjct: 234 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLR 293
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R ++VATPGR++D L+ M R++++
Sbjct: 294 CALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 352
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 353 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 408
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 409 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 468
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 469 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 529 TGIATTFINKACDESVLMDLKALLLEAKQKV 559
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/391 (33%), Positives = 196/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 201 DGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 260
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +R
Sbjct: 261 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLR 320
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R ++VATPGR++D L+ M R++++
Sbjct: 321 CALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 379
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 380 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 435
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 436 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 495
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 496 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 555
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 556 TGIATTFINKACDESVLMDLKALLLEAKQKV 586
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/391 (33%), Positives = 196/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 192 DGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 251
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +R
Sbjct: 252 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLR 311
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R ++VATPGR++D L+ M R++++
Sbjct: 312 CALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 370
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 371 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 426
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 427 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 486
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 487 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 546
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 547 TGIATTFINKACDESVLMDLKALLLEAKQKV 577
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/391 (33%), Positives = 196/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 174 DGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 233
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +R
Sbjct: 234 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLR 293
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R ++VATPGR++D L+ M R++++
Sbjct: 294 CALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 352
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 353 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 408
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 409 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 468
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 469 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 529 TGIATTFINKACDESVLMDLKALLLEAKQKV 559
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 132/391 (33%), Positives = 196/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 174 DGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 233
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +R
Sbjct: 234 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLR 293
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R ++VATPGR++D L+ M R++++
Sbjct: 294 CALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 352
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 353 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 408
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 409 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 468
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 469 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 529 TGIATTFINKACDESVLMDLKALLLEAKQKV 559
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 133/391 (34%), Positives = 196/391 (50%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
DG SF E+ L +LR + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 173 DGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 232
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQFTD------IR 226
F LP + L + KR+P + LI+ P+RELA Q H ++E + +
Sbjct: 233 VFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLH 292
Query: 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLEL 286
C L +GG+S K Q +R I+VATPGR++D L+ M R++++
Sbjct: 293 CALCIGGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKM-VSLDICRYLALDEADRMIDM 351
Query: 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXX 346
GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 352 GFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG----RAGAASLDV 407
Query: 347 XXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ V L C + V+IF+ K + L ++A +HG Q
Sbjct: 408 IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQ 467
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
+R +A+E FR+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R+G
Sbjct: 468 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 527
Query: 467 EGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
G A TF+ D S+L KA+ A K+
Sbjct: 528 TGIATTFINKACDESVLMDLKALLLEAKQKV 558
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/364 (35%), Positives = 192/364 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + +L + LL++ + +G + PT IQ +P+AL G+D+ S+ TGSGKT AF LP L+R
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 187 LLYR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
++ KR P RVLIL PTRELA QV+S + + T + V+GG + Q AL
Sbjct: 63 VISTRALSKRDP--RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KR 302
P +VATPGR+ DHL + R+L+LGF+ ++ + KR
Sbjct: 121 AKEPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKR 179
Query: 303 RQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT++FSATL +++E+ L PL ++ + ++ ++EA+L
Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD--HKEALL 237
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L S +VIIF+ T+ RL A L G L QA R + ++ F +
Sbjct: 238 SRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQ 297
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ TDVA+RGLD++ V VIN+ P+ YVHR+GRT RAG +G A++ V D
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDS 357
Query: 482 LKAI 485
K +
Sbjct: 358 FKKV 361
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 129/364 (35%), Positives = 192/364 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + +L + LL++ + +G + PT IQ +P+AL G+D+ S+ TGSGKT AF LP L+R
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 187 LLYR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
++ KR P RVLIL PTRELA QV+S + + T + V+GG + Q AL
Sbjct: 63 VISTRALSKRDP--RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KR 302
P +VATPGR+ DHL + R+L+LGF+ ++ + KR
Sbjct: 121 AKEPHFIVATPGRIADHLEQK-NLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKR 179
Query: 303 RQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT++FSATL +++E+ L PL ++ + ++ ++EA+L
Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD--HKEALL 237
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L S +VIIF+ T+ RL A L G L QA R + ++ F +
Sbjct: 238 SRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQ 297
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
L+ TDVA+RGLD++ V VIN+ P+ YVHR+GRT RAG +G A++ V D
Sbjct: 298 QILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDS 357
Query: 482 LKAI 485
K +
Sbjct: 358 FKKV 361
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 385 (140.6 bits), Expect = 2.0e-50, Sum P(2) = 2.0e-50
Identities = 94/275 (34%), Positives = 148/275 (53%)
Query: 66 DFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD--GASFH 123
D + K +++ VP N + D + + ED++ F T + A+ G +
Sbjct: 29 DAETQKPTKRKKVPAAPNVNLDFLGEANAGDSDEDDEAFIAEKQTSANRKSANLKGRTVK 88
Query: 124 -ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
F + L+ LL+A G+S PTPIQ IP+ + +D+ G A TGSGKTAAF +P
Sbjct: 89 KGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIP 148
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
+E+L + A R LIL+P+RELA+Q +++++ + TD++ L+VGG S + Q
Sbjct: 149 MIEKLKSHSTKFGA-RGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGM 207
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
+ PDIV+ATPGR + HL+ M+ RL E+GF+A++ E++ P
Sbjct: 208 MAGNPDIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPST 266
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337
RQT+LFSATL + + E + L P + D +K
Sbjct: 267 RQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESK 301
Score = 196 (74.1 bits), Expect = 2.0e-50, Sum P(2) = 2.0e-50
Identities = 48/120 (40%), Positives = 66/120 (55%)
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
I+F+ TK L L A + ++G+L Q R ++ FR + L+ TDVAARG
Sbjct: 377 IVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARG 436
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
+DI + VINY P +VHRVGRTARAGR+G++ + V D D L + G KL
Sbjct: 437 IDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRKL 496
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 530 (191.6 bits), Expect = 2.4e-50, P = 2.4e-50
Identities = 132/373 (35%), Positives = 190/373 (50%)
Query: 109 DTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
DT+ + + F + LS P+ + GY PTPIQ IP+ L G+D+
Sbjct: 79 DTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAM 138
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
A TGSGKTA F LP ERL R + A R LIL+PTRELA+Q +++ +FT ++
Sbjct: 139 ARTGSGKTACFLLPMFERLKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTA 197
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGF 288
L++GG + Q AL PDI++ATPGR++ H+ M+ RL E+GF
Sbjct: 198 LILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGF 256
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXX 348
+ ++ E++ P QT+LFSATL + + E + LT+P+ + D +K L
Sbjct: 257 AEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLL 316
Query: 349 XXXXXXXNQEAVLLSLCSKTFT--SKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLT 405
+ AVLL L + ++F TK A L ++L G + A ++ L
Sbjct: 317 VREDT---KAAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMG-QGVSCAHIYSALD 372
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q R L F LI TD+AARGLDI + VINY+ P ++HRVGR ARAG
Sbjct: 373 QTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAG 432
Query: 466 REGYAVTFVTDND 478
R G A + V ++
Sbjct: 433 RSGTAYSLVAPDE 445
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 157/474 (33%), Positives = 229/474 (48%)
Query: 36 SKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHED 95
SK+ K S D ++ S SD ++ S+ K +KS +++S + S S+ D+ E+
Sbjct: 24 SKKLKMSKRDESSDESSSSDSEVESKSKSIK-KSSKSEEKKS----EKKSSSSKEDKEEE 78
Query: 96 YKPEDEDDF--SNAGDTKSFFAPADGASFHANSFMEL-NLSRPLLRACEALGYSKPTPIQ 152
K E ++D S K +G S N F + + P + G++ PT IQ
Sbjct: 79 VKEETKEDIVLSPTEWRKKHNVLIEGKS-QPNPFQKFTDYEFPRMFQHIFQGFTAPTVIQ 137
Query: 153 AACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR----VLILTPTREL 208
P+ L G D+ G A TGSGKT AF LP L +++ PKR P+ VL++ PTREL
Sbjct: 138 GQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKR-PSYGATPLVLVMAPTREL 196
Query: 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXX 268
A Q+ + + + T IR GGL Q LR+ DIV+ TPGR+ D LR
Sbjct: 197 AQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKH---H 253
Query: 269 XXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328
R+L++GF +I L+ PK RQT++FSAT ++V L L P+
Sbjct: 254 LSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPI 313
Query: 329 RLSADPSAKRPS-TLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSK----VIIFSGTKQAA 383
+++ S +T + ++ +K T+ VI+F K
Sbjct: 314 KITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEKYKC 373
Query: 384 HRLK-ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
+ L +K+ LH Q R L+LFR + LIATDVAARGLDI V+ V
Sbjct: 374 DDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAV 433
Query: 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTD---NDRSLLKAIAKRAGSKL 493
NY P ++ YVHR+GRT RAG+ G A ++VT N R L+K I +R K+
Sbjct: 434 FNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNLRDLVK-ILQRTNQKI 486
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 529 (191.3 bits), Expect = 3.1e-50, P = 3.1e-50
Identities = 147/440 (33%), Positives = 209/440 (47%)
Query: 59 RRRTTSVDFKITKSLQQRSVPIVDNDHSDSE---FD-QHED----YK----------PED 100
R R T +K K L++R + SDSE F+ Q ED K P
Sbjct: 12 RSRATMAQWKKKKGLRKRRGAASQSHSSDSEDGEFEVQAEDDARAQKLGPGRPLPTFPTS 71
Query: 101 EDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL 160
E DT+ + + F + LS P+ + GY PTPIQ IP+ L
Sbjct: 72 ECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMIL 131
Query: 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220
G+D+ A TGSGKTA F +P ERL + A R LIL+PTRELA+Q +++
Sbjct: 132 DGKDVVAMARTGSGKTACFLIPMFERLKTHSAQTGA-RALILSPTRELALQTMKFTKELG 190
Query: 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXX 280
+FT ++ L++GG + Q AL PDI++ATPGR++ H+ M+
Sbjct: 191 KFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEA 249
Query: 281 XRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS 340
RL E+GF+ ++ E++ P QT+LFSATL + + E + LT+P+ + D +K
Sbjct: 250 DRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNE 309
Query: 341 TLTXXXXXXXXXXXXNQEAVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAA 398
L + AVLL L + ++F TK A L L + A
Sbjct: 310 QLKTSFFLVREDA---KAAVLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCA 366
Query: 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRV 458
++ L Q R L F LI TD+AARGLDI + VINY+ P ++HRV
Sbjct: 367 HIYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRV 426
Query: 459 GRTARAGREGYAVTFVTDND 478
GR ARAGR G A + V ++
Sbjct: 427 GRVARAGRSGTAYSLVAPDE 446
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 490 (177.5 bits), Expect = 3.2e-50, Sum P(3) = 3.2e-50
Identities = 123/375 (32%), Positives = 187/375 (49%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F +L +S P L+ + K T IQA IP++L G D+ +A TGSGKT AF +P
Sbjct: 40 AKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPV 99
Query: 184 LERLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
+E+L YR K + LI++PTRELA+Q++ ++ KI T LV+GG K +
Sbjct: 100 IEKL-YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
+ S +I++ TPGR++ HL ++ R L++GF + +V
Sbjct: 159 RI-SRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSA----DPSA-KRPSTLTXXXXXXXXXXXXN 356
RQT+LFSAT ++ V +L +LSLT + D S K ST +
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALE 414
+ +L S K+I+F + + H + F + LHG Q R E L+
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F + L ATDV ARG+D V V+ CP D+ +Y+HRVGR AR G++G ++ +
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397
Query: 475 TDNDR-SLLKAIAKR 488
T ++ + LK + R
Sbjct: 398 TPQEQEAFLKRLNAR 412
Score = 38 (18.4 bits), Expect = 3.2e-50, Sum P(3) = 3.2e-50
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 56 EHFRRRTTSVDFKITKSLQQRSVPIVD 82
E+ + + D KITK+ + +PI D
Sbjct: 24 ENLKTKIDEYDPKITKAKFFKDLPISD 50
Score = 37 (18.1 bits), Expect = 3.2e-50, Sum P(3) = 3.2e-50
Identities = 18/89 (20%), Positives = 34/89 (38%)
Query: 486 AKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIA 545
++RA K S+ + S SK+I E + + + ++ + E K E +
Sbjct: 589 SRRAQKKALSKKASLASKGNASKLIFDDEGEAHPVYELEDEEEFHKRGDAEVQKTE-FLT 647
Query: 546 HKEEIFARPKRTWFVTEKEKKLAVKADKV 574
+ + A KEKK K ++
Sbjct: 648 KESAVMADIDNIDKQVAKEKKQEKKRKRL 676
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 523 (189.2 bits), Expect = 4.3e-50, P = 4.3e-50
Identities = 143/443 (32%), Positives = 221/443 (49%)
Query: 73 LQQRSV-PIVDNDHSDSEFDQ-HEDYKPEDED-DFSNAGDTKSFFAP----ADGASFH-- 123
+ +R + PI DHS +++ ++D+ E E +T + G H
Sbjct: 167 VDKRKIEPITALDHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRP 226
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
+F + S ++ A + Y KPT IQ +P+ L+GRD+ G A TGSGKTAAF LP
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286
Query: 184 LERLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
+ ++ +P+ R +I PTRELA Q+ +K ++ +R V GG+S Q
Sbjct: 287 IVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFK 346
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
L++ +IVVATPGR+ID L+ + R+ +LGF ++ +V
Sbjct: 347 ELKAGCEIVVATPGRLIDMLKMK-ALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT+LFSAT+ V++L + L+ P+R++ +T +L
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAE-KLPWLL 464
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L V++F+ K ++ L + K A LHG+ QA R+E L+ F+
Sbjct: 465 EKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVH 524
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG-REGYAVTFVTDNDRS 480
LIATDVAARGLDI ++TV+NY +D+ +VHR+GRT RAG R+G A T VT +
Sbjct: 525 HVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE-- 582
Query: 481 LLKAIAKRAGSKLKSRIVAEQSI 503
A+ AG + S + A Q++
Sbjct: 583 -----ARFAGELVNSLVAAGQNV 600
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 131/367 (35%), Positives = 184/367 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L P+LR +LGY++ TPIQA +PL L G+D+ A TGSGKTAAF + L
Sbjct: 5 AFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLS 64
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-IRCCLVVGGLSTKMQETALR 244
RL R+ A L+L PTRELA QV + ++A+FTD I+ + GG+ Q +L
Sbjct: 65 RLDALSFRVQA---LVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLE 121
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
+V+ TPGR++DHLR S R+L++GF +I L+ P +RQ
Sbjct: 122 HGAHVVIGTPGRLLDHLRRG-SLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQ 180
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT + + + +P+ +S D + E +L
Sbjct: 181 TLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGAIEQVFYEVDSGQRIEAVERIL--- 237
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+IF TK + + A +HG+L Q +R L F + L
Sbjct: 238 -GHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVL 296
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
+ATDVAARGLDI + VINY R+ + HR+GRT RAG G AV+ VT + L+ A
Sbjct: 297 VATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAA 356
Query: 485 IAKRAGS 491
IA GS
Sbjct: 357 IADVPGS 363
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 526 (190.2 bits), Expect = 7.7e-50, P = 7.7e-50
Identities = 131/372 (35%), Positives = 187/372 (50%)
Query: 109 DTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
DT+ + + F + LS P+ + GY PTPIQ IP+ L G+D+
Sbjct: 79 DTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAM 138
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
A TGSGKTA F LP ERL R + A R LIL+PTRELA+Q +++ +FT ++
Sbjct: 139 ARTGSGKTACFLLPMFERLKARSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLKTA 197
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGF 288
L++GG + Q AL PDI++ATPGR++ H+ M+ RL E+GF
Sbjct: 198 LILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGF 256
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXX 348
+ ++ E++ P QT+LFSATL + + E + LT+P+ + D +K L
Sbjct: 257 AEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFL 316
Query: 349 XXXXXXXNQEAVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ AVLL L + ++F TK A L L + A ++ L Q
Sbjct: 317 VREDT---KTAVLLYLLQNVVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQ 373
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
R L F LI TD+AARGLDI + VINY+ P ++HRVGR ARAGR
Sbjct: 374 TARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGR 433
Query: 467 EGYAVTFVTDND 478
G A + V ++
Sbjct: 434 SGTAYSLVAPDE 445
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 139/389 (35%), Positives = 189/389 (48%)
Query: 124 ANSFMELNLSRP-LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
AN F L L RP L++ LG TPIQ CIP L G+D G+A TGSGKT AFALP
Sbjct: 6 ANPFQILGL-RPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALP 64
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
LERL P A L+LTPT ELA Q+ Q +R C+V GG ++
Sbjct: 65 ILERLSEEPVSHFA---LVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQK 121
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L P IVVA PGR+ DHL + R+L F + + R PK
Sbjct: 122 LMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKT 181
Query: 303 RQTMLFSATLTEDVDELIKLSLTKP-LRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQ + FSAT+ + + E + S D TL +++ VL
Sbjct: 182 RQNLFFSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADY---DRDMVL 238
Query: 362 LSLCSK----TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417
+ K + V+IF+ TK+ L + + LHG + Q +R+ AL F+
Sbjct: 239 IEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFK 298
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT-FVTD 476
+ LIATDVAARGLDI V+ V+N+ PR Y+HRVGRTARAGR+G +++ F
Sbjct: 299 SNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFP 358
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITK 505
D LL AI + +KL + ++ + +
Sbjct: 359 RDLELLAAIEEEINTKLTEHPIDQRMVER 387
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 141/389 (36%), Positives = 202/389 (51%)
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 188
+ LS LL+A +A GY TPIQ IP+ G D+ SA TG+GKTAAF+LP L+ +
Sbjct: 6 IGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAK 65
Query: 189 --YRPKRIP----------------AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230
+ K AIR LILTPTRELA QV I++ +Q+ I+ +V
Sbjct: 66 ANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVV 125
Query: 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSA 290
GG Q L+ D++VATPGR+++HL + R+L++GF
Sbjct: 126 YGGGKMASQTKMLKQGLDVLVATPGRLLEHLA-LRNVDLSQVKFLVLDEADRMLDMGFLT 184
Query: 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXX 350
+I +L+ + QT++FSAT ++ V L L P +S +K +T
Sbjct: 185 DIEKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISV---SKENTTSGKIKQAVY 241
Query: 351 XXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL 410
+ +L L +V++F+GTK++A+ L L +KAA HG+ TQ R
Sbjct: 242 WVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARN 301
Query: 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA 470
+ALE F + V L+ATDVAARGLDI + V+N+ P YVHRVGRT RAG+ G A
Sbjct: 302 KALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTA 361
Query: 471 VTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499
++ V+ D L+ I + K + RIVA
Sbjct: 362 ISLVSPKDERFLENIEQLIERKFE-RIVA 389
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 495 (179.3 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 128/356 (35%), Positives = 181/356 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L LL ++GY++ TPIQA +P L G D+ G TGSGKTAAF L L
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALR 244
+L KR I+ L+L PTRELA QV I +A+ +++ + GG+ Q +L
Sbjct: 62 KL--DVKRF-RIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLE 118
Query: 245 SMPDIVVATPGRMIDHL-RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
I+V TPGR++DHL RN + R+LE+GF ++ ++ P+ R
Sbjct: 119 HGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEAD--RMLEMGFQPQLDAIIEQSPRER 176
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT E + + K + P+ + A + ++ +T+ Q LL
Sbjct: 177 QTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEK-NTIEQHFYQLDDDKSRMQALQLLL 235
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKI-LFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L K ++F TK+ ++ L GL LHG+L Q R E L F +
Sbjct: 236 LEHKP--ESAVVFCNTKRETQKVADELEGLG-FSVLALHGDLEQRDRDETLLQFANKSAC 292
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI + V NY D ++HR+GRT RAG +G A TF D D
Sbjct: 293 VLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQD 348
Score = 39 (18.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 461 TARAGREGYAV--TFVTDNDR--SLLKAIAKRAGSKLKSRIVAEQSITKW 506
T G EG V VTD ++ + +AK+A SK+ S + +S W
Sbjct: 406 TGDNGIEGTQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAW 455
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 495 (179.3 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 128/356 (35%), Positives = 181/356 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F L L LL ++GY++ TPIQA +P L G D+ G TGSGKTAAF L L
Sbjct: 2 AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALR 244
+L KR I+ L+L PTRELA QV I +A+ +++ + GG+ Q +L
Sbjct: 62 KL--DVKRF-RIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLE 118
Query: 245 SMPDIVVATPGRMIDHL-RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
I+V TPGR++DHL RN + R+LE+GF ++ ++ P+ R
Sbjct: 119 HGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEAD--RMLEMGFQPQLDAIIEQSPRER 176
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT E + + K + P+ + A + ++ +T+ Q LL
Sbjct: 177 QTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEK-NTIEQHFYQLDDDKSRMQALQLLL 235
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKI-LFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L K ++F TK+ ++ L GL LHG+L Q R E L F +
Sbjct: 236 LEHKP--ESAVVFCNTKRETQKVADELEGLG-FSVLALHGDLEQRDRDETLLQFANKSAC 292
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI + V NY D ++HR+GRT RAG +G A TF D D
Sbjct: 293 VLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQD 348
Score = 39 (18.8 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 461 TARAGREGYAV--TFVTDNDR--SLLKAIAKRAGSKLKSRIVAEQSITKW 506
T G EG V VTD ++ + +AK+A SK+ S + +S W
Sbjct: 406 TGDNGIEGTQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAW 455
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 496 (179.7 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 132/377 (35%), Positives = 189/377 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L LL+ + + T IQ IPL + GRD+ S+ TGSGKT AF LP L +
Sbjct: 7 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
Query: 187 LLYRPKRIPAI--RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L + K A R LIL PTRELA QV+ + + L+ GG + Q AL
Sbjct: 67 SL-KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALA 125
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRR 303
P +VATPGR+ DHL + S R+L+LGF+ E+ + +RR
Sbjct: 126 RGPRFIVATPGRLADHL-DHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
Query: 304 QTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
QT++FSATL DV+++ L +P R++ ++ +T ++EA+L
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLD--HKEALLD 242
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ + +VIIF+ T+ RL LKA L GNL Q QR + F +
Sbjct: 243 RILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFK 302
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ TDVA+RGLDI V VIN+ P+ YVHRVGRT RAG +G A++ V D
Sbjct: 303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESF 362
Query: 483 KAIAKRAGSKLKSRIVA 499
K + +++ ++A
Sbjct: 363 KRVEAFLQQEIQFEVLA 379
Score = 37 (18.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 55 DEHFRRRTTSVDFKITKSLQQRSVPI 80
D + +FK +QQ+++P+
Sbjct: 13 DNRLLKNLAHYNFKQATEIQQQAIPL 38
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 496 (179.7 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 132/377 (35%), Positives = 189/377 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +L L LL+ + + T IQ IPL + GRD+ S+ TGSGKT AF LP L +
Sbjct: 7 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
Query: 187 LLYRPKRIPAI--RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L + K A R LIL PTRELA QV+ + + L+ GG + Q AL
Sbjct: 67 SL-KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALA 125
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRR 303
P +VATPGR+ DHL + S R+L+LGF+ E+ + +RR
Sbjct: 126 RGPRFIVATPGRLADHL-DHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
Query: 304 QTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
QT++FSATL DV+++ L +P R++ ++ +T ++EA+L
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLD--HKEALLD 242
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
+ + +VIIF+ T+ RL LKA L GNL Q QR + F +
Sbjct: 243 RILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFK 302
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L+ TDVA+RGLDI V VIN+ P+ YVHRVGRT RAG +G A++ V D
Sbjct: 303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESF 362
Query: 483 KAIAKRAGSKLKSRIVA 499
K + +++ ++A
Sbjct: 363 KRVEAFLQQEIQFEVLA 379
Score = 37 (18.1 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 55 DEHFRRRTTSVDFKITKSLQQRSVPI 80
D + +FK +QQ+++P+
Sbjct: 13 DNRLLKNLAHYNFKQATEIQQQAIPL 38
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 137/432 (31%), Positives = 210/432 (48%)
Query: 68 KITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAG-DTKSFFAP----ADGASF 122
K+ K Q+ V + SD E + ED + ++ED+ N D+ P D S
Sbjct: 62 KVVKEEAQKKRK-VSHSPSDEEESESEDEEKKEEDEKDNVKEDSGKANVPDLPSVDAVSL 120
Query: 123 HA-----NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
F EL LS L+ + +G+ T IQ IP L GRD+ G+A TGSGKT
Sbjct: 121 PQPDGGPKKFTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTL 180
Query: 178 AFALPTLERLL---YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL 234
AF +P +E L ++P+ V++++PTRELA+Q+ + ++ +V+GG
Sbjct: 181 AFLIPAIEMLSALRFKPRN--GTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGA 238
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHE 294
+ + + L ++++ATPGR++DHL+N+ R+LE+GF E+ +
Sbjct: 239 NRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQ 298
Query: 295 LVRLCPKR-RQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXX 352
++++ P RQTMLFSAT T V++L ++SL PL ++ D K ST+
Sbjct: 299 IIKILPNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVD-HRKEHSTVEGLEQGYVIC 357
Query: 353 XXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
+ +L S + K+I+F + L L +LHG Q +R
Sbjct: 358 EADKRFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNT 417
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAV 471
F LI TDVAARGLDI V +I + P D Y+HRVGRTAR A G ++
Sbjct: 418 FFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSL 477
Query: 472 TFVTDNDRSLLK 483
F+ ++ LK
Sbjct: 478 MFLQPSEVGFLK 489
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 129/362 (35%), Positives = 193/362 (53%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF L+L + E + KPTPIQA P L+G+D+ G A TGSGKT AF +P +
Sbjct: 115 SFDYLSLDSSI--QAEISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAIS 172
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
L+ K+ I+VL+++PTRELA Q++ + + ++CC V GG+ Q L+
Sbjct: 173 HLMNDQKK-RGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK 231
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-KRRQ 304
+VVATPGR++D L+ S R+LE GF +I ++R +RQ
Sbjct: 232 S-QVVVATPGRLLDLLQEG-SVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQ 289
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T++F+AT ++V EL + P+++S + + + +E LL L
Sbjct: 290 TLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTAN-KRITQIVEVVDPRGKERKLLEL 348
Query: 365 CSKTFTS-----KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
K + KV+IF+ K+ A R++ A +HG+L+Q QR +AL F+
Sbjct: 349 LKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSG 408
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+ L+ATDVAARGLDI V+TVIN P + YVHR+GRT RAG+ G A T T+ ++
Sbjct: 409 KSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEK 468
Query: 480 SL 481
L
Sbjct: 469 HL 470
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 506 (183.2 bits), Expect = 3.0e-49, Sum P(2) = 3.0e-49
Identities = 132/410 (32%), Positives = 205/410 (50%)
Query: 79 PIVDNDHSDSEFDQHED---YKPEDED-DFSNAG--DTKSFFAPADGAS--FHANSFMEL 130
P+ DHS+ + + E Y +DE D SN +T F + GA+ +SF
Sbjct: 199 PLPPIDHSELDRNYFEIKIIYNTKDECIDASNLELINTLHFISRVSGAAPPRPGSSFAHF 258
Query: 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 190
L+ Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L ++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ 318
Query: 191 PKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPD 248
+ P +I+ PTREL Q+H+ ++ + ++R V GG S Q AL+ +
Sbjct: 319 KELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378
Query: 249 IVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLF 308
IVV TPGR+IDH++ + R+ ++GF ++ + RQT+LF
Sbjct: 379 IVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLF 437
Query: 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKT 368
SAT + +++L + L P+R+ + +T + L T
Sbjct: 438 SATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTRRLVEFT 496
Query: 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428
+ V++F K A L LHG++ Q++R + + F+K+ + L+ATD
Sbjct: 497 SSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATD 556
Query: 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
VAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 557 VAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 41 (19.5 bits), Expect = 3.0e-49, Sum P(2) = 3.0e-49
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDSSN 85
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 148/459 (32%), Positives = 230/459 (50%)
Query: 92 QHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELN--LSRPLLRACEALGYSKPT 149
+ ED + E + + S GA F NSF L +S L+ +G++ T
Sbjct: 132 EDEDGQDTGEKEAEEEDEVPSLPLGLTGA-FEDNSFTSLAGLVSENTLKGISDMGFTHMT 190
Query: 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTRE 207
IQ I L GRDI +A TGSGKT AF +P +E L+Y+ K +P V+IL+PTRE
Sbjct: 191 EIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVE-LIYKLKFMPRNGTGVIILSPTRE 249
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSX 267
LA+Q + +++++ L++GG + + L + +I+VATPGR++DH++N+
Sbjct: 250 LAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGF 309
Query: 268 XXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK- 326
R+LE+GF E+ ++++L PKRRQTMLFSAT T V++L K+SL K
Sbjct: 310 MYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKE 369
Query: 327 PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQAAHR 385
PL + D + K +T+ + +L + K K+++F S +
Sbjct: 370 PLYVGVDDN-KETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYH 428
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
++L L +HG Q +R F L+ TDVAARGLDI V ++ Y
Sbjct: 429 YELL-NYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPEVDWIVQY 487
Query: 446 ACPRD--LTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQ 501
P D Y+HRVGRTAR GR G+A+ + + L+ + K+A R+ +
Sbjct: 488 DPPDDPKQKEYIHRVGRTARGINGR-GHALLILRPEELGFLRYL-KQA------RVPLSE 539
Query: 502 SITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
WSKI + ++ Q+ +++ L K+ EA KA
Sbjct: 540 FEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKA 574
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 148/467 (31%), Positives = 234/467 (50%)
Query: 84 DHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPAD--GASFHANSFMEL-NL-SRPLLRA 139
D ++ ++ + E EDD A D++ P GA F SF L NL + L+A
Sbjct: 125 DTKKAKTEESAEACEEPEDDVKKADDSEVPSLPLGLTGA-FEDTSFASLSNLVNENTLKA 183
Query: 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AI 197
E +G+ + T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P
Sbjct: 184 IEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIE-LIVKLKFMPRNGT 242
Query: 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM 257
VLIL+PTRELA+Q +++++ L++GG + + L + +I+VATPGR+
Sbjct: 243 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATPGRL 302
Query: 258 IDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317
+DH++N+ R+L++GF E+ ++++L P RRQTMLFSAT T V+
Sbjct: 303 LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVE 362
Query: 318 ELIKLSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF 376
+L ++SL K PL + D K +T+ + +L + K KV++F
Sbjct: 363 DLARISLKKEPLYVGVDDD-KEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVF 421
Query: 377 -SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
S + ++L L +HG Q +R F L+ TDVAARGLD
Sbjct: 422 FSSCMSVKYHYELL-NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLD 480
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
I V ++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + +
Sbjct: 481 IPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ------ 533
Query: 494 KSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
S++ Q WSK+ + ++ Q+ +++ L K+ EA K+
Sbjct: 534 -SKVPLNQFDFSWSKVSD-IQSQLEKLIEKNY---FLHKSAQEAYKS 575
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 128/424 (30%), Positives = 218/424 (51%)
Query: 92 QHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPI 151
+ E+ K E +D D K+ G + +F L+LS A + +G+ T I
Sbjct: 60 EEEEEKVEAMED---GEDEKNIVIVGKGIMTNV-TFDSLDLSEQTSIAIKEMGFQYMTQI 115
Query: 152 QAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTRELA 209
QA I L G+D+ G+A TGSGKT AF +P +E LL++ + P V+++ PTRELA
Sbjct: 116 QAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE-LLFKERFSPRNGTGVIVICPTRELA 174
Query: 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXX 269
+Q ++ E++ + +V+GG + + + + S ++V+ATPGR++DHL+N+ +
Sbjct: 175 IQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIY 234
Query: 270 XXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLR 329
R+LE F ++++++++ PK RQT LFSAT T V +L ++SLT P+
Sbjct: 235 KHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVH 294
Query: 330 LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 389
+ D +R T + +L+S K K+++F T ++ +
Sbjct: 295 VDVD-DGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEI 353
Query: 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 449
++ + +++HG + Q +R + F K L+ TDVAARGLDI V +I Y P
Sbjct: 354 MKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPD 413
Query: 450 DLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
T Y+HRVGRTAR G +G A+ + + ++ + K A +K E+ ++
Sbjct: 414 KPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYL-KAAKVPVKELEFNEKRLSNVQS 472
Query: 509 IIEQ 512
+E+
Sbjct: 473 ALEK 476
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 522 (188.8 bits), Expect = 4.7e-49, P = 4.7e-49
Identities = 133/380 (35%), Positives = 194/380 (51%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
S+ + L+ + + Y KPT IQA IP + GRD+ G A TGSGKT AF LP
Sbjct: 510 SWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFR 569
Query: 186 RLLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+L +PK P + LI++PTRELA+Q+H +K ++ +R V GG S Q L
Sbjct: 570 HILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAEL 629
Query: 244 RSMPDIVVATPGRMIDHL--RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
+ DIVV TPGRMID L N R+ ++GF +I+ +V
Sbjct: 630 KRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRP 689
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT++FSAT V+ + K L KPL + A + S + + L
Sbjct: 690 DRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIEL 749
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
LS+ +++IF+ ++ L + + LHG+ Q R E + F+ +
Sbjct: 750 LSIWYHK--GQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVK 807
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDR- 479
LIAT +A+RGLDI + V+N+ CP L YVHRVGRT RAG G A TF+T D +R
Sbjct: 808 TILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERF 867
Query: 480 --SLLKAIAKRAGSKLKSRI 497
S++KA+ +++GSK+ +
Sbjct: 868 SSSIIKAL-EQSGSKVPDEL 886
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 518 (187.4 bits), Expect = 5.1e-49, P = 5.1e-49
Identities = 130/372 (34%), Positives = 184/372 (49%)
Query: 109 DTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
DT+ + + F + LS P+ + GY PTPIQ IP+ L G+D+
Sbjct: 80 DTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAM 139
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
A TGSGKTA F LP ERL + A R LIL+PTRELA+Q +++ +FT ++
Sbjct: 140 ARTGSGKTACFLLPMFERLKTHSAQTGA-RALILSPTRELALQTLKFTKELGKFTGLKTA 198
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGF 288
L++GG + Q AL PDI++ATPGR++ H+ MS RL E+GF
Sbjct: 199 LILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGF 257
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXX 348
+ ++ E++ P QT+LFSATL + + E + LT+P+ + D K L
Sbjct: 258 AEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFL 317
Query: 349 XXXXXXXNQEAVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ AVLL L + ++F TK A L L + A ++ L
Sbjct: 318 VREDT---KAAVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDP 374
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
R L F LI TD+AARGLDI + VINY+ P ++HRVGR ARAGR
Sbjct: 375 TARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGR 434
Query: 467 EGYAVTFVTDND 478
G A + V ++
Sbjct: 435 SGTAYSLVAPDE 446
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 489 (177.2 bits), Expect = 6.0e-49, Sum P(2) = 6.0e-49
Identities = 132/415 (31%), Positives = 209/415 (50%)
Query: 79 PIVDNDHSDSEF--------DQHEDYK---PEDEDDFSNAGDTKSFFA--PADGASFHAN 125
P+ DHS+ E+ D+HE+ P+ + + + + A P G+SF
Sbjct: 194 PLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHF 253
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F E + + +R E Y++PTPIQ +P+A++GRD+ G A TGSGKTAAF P L
Sbjct: 254 GFDEQLMHQ--IRKSE---YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 308
Query: 186 RLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
++ + + P +I+ PTREL Q+HS ++ + ++R V GG S Q AL
Sbjct: 309 HIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 368
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ +IVV TPGR+IDH++ + R+ ++GF ++ + R
Sbjct: 369 QEGAEIVVCTPGRLIDHVKKK-ATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDR 427
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 428 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPS-KWNWLTRR 486
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 487 LVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPI 546
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 547 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 601
Score = 40 (19.1 bits), Expect = 6.0e-49, Sum P(2) = 6.0e-49
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 62 ANFDEENAYFEDEEEDNSN 80
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 127/390 (32%), Positives = 191/390 (48%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LS+ + RA LGY PT +Q IP+AL +D+ + TGSGKTA+F +P E
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+ + + P + L+LTPTRELAVQV I I +F I+ + G Q+ L+
Sbjct: 65 MVEWEENK-P--QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
IVV TPGR++DH+ + +L +GF ++ ++ P +R T
Sbjct: 122 KTHIVVGTPGRVLDHIEKG-TLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
MLFSATL EDV+ L + + P + + + +T +E + L
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEI-----KAAGITTDKIEHTLFEVREEEKLSLLKD 235
Query: 366 SKTFTS--KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
T + IIF T++ + ++HG + Q R ++ FRK +
Sbjct: 236 VTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRY 295
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARG+DI + VINY P + SYVHR GRT RAG G A+TF+T + L+
Sbjct: 296 LVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355
Query: 484 AIAKRAGSKL-KSRIVAEQSITKWSKIIEQ 512
I G + K+ +++ + K E+
Sbjct: 356 EIEAYIGFAIPKANAPSKEEVMKGKAAFEE 385
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 127/390 (32%), Positives = 191/390 (48%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF LS+ + RA LGY PT +Q IP+AL +D+ + TGSGKTA+F +P E
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+ + + P + L+LTPTRELAVQV I I +F I+ + G Q+ L+
Sbjct: 65 MVEWEENK-P--QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
IVV TPGR++DH+ + +L +GF ++ ++ P +R T
Sbjct: 122 KTHIVVGTPGRVLDHIEKG-TLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLC 365
MLFSATL EDV+ L + + P + + + +T +E + L
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEI-----KAAGITTDKIEHTLFEVREEEKLSLLKD 235
Query: 366 SKTFTS--KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
T + IIF T++ + ++HG + Q R ++ FRK +
Sbjct: 236 VTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRY 295
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARG+DI + VINY P + SYVHR GRT RAG G A+TF+T + L+
Sbjct: 296 LVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLE 355
Query: 484 AIAKRAGSKL-KSRIVAEQSITKWSKIIEQ 512
I G + K+ +++ + K E+
Sbjct: 356 EIEAYIGFAIPKANAPSKEEVMKGKAAFEE 385
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 480 (174.0 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 125/356 (35%), Positives = 177/356 (49%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT-- 183
SF LLR + G+S PTPIQA P+A+ GRDI A TGSGKT + +P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 184 -LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
L+R+ + P I L+L+PTRELA Q+ K + + I C + GG Q
Sbjct: 219 HLQRIRNDSRMGPTI--LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L DIVVATPGR+ D L R+L++GF +I ++V+ P +
Sbjct: 277 LERGADIVVATPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT++++AT + V ++ L P +++ + + + Q +
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQ 395
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L S+ SKVIIF TK+ +L AA +HG+ +Q +R L FR
Sbjct: 396 ILRSQEPGSKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTP 454
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLD+ ++ V+NY P + YVHR+GRT RAG G A TF D D
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQD 510
Score = 47 (21.6 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 21/84 (25%), Positives = 32/84 (38%)
Query: 35 PSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDF--KITKSLQQRSVPIVDNDHSDSEFDQ 92
P PW + +F T+V K T SL + P V S + Q
Sbjct: 14 PEDHTLPKPWK-GLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFSPAVSVS-SSVQVQQ 71
Query: 93 HEDYKP-EDEDDFSNAGDTKSFFA 115
+ Y P +D+D +S + S F+
Sbjct: 72 TDAYAPPKDDDKYSRGSERVSRFS 95
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 144/460 (31%), Positives = 234/460 (50%)
Query: 89 EFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELN--LSRPLLRACEALGYS 146
E ++ KP+DE++ S + S GA F SF L+ ++ L+A + +G++
Sbjct: 144 EETENNGEKPDDEEEDS---EVPSLPLGLTGA-FEDTSFASLSSLVNENTLKAIKEMGFT 199
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTP 204
T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P VLIL+P
Sbjct: 200 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLKFMPRNGTGVLILSP 258
Query: 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
TRELA+Q +++++ + L++GG + + L + +I+VATPGR++DH++N+
Sbjct: 259 TRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT 318
Query: 265 MSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324
R+L++GF E+ ++++L P RRQTMLFSAT T V++L ++SL
Sbjct: 319 PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISL 378
Query: 325 TK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQA 382
K PL + D K +T+ + +L + K K+++F S K
Sbjct: 379 KKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSV 437
Query: 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
+ ++L L +HG Q +R F L+ TDVAARGLDI V +
Sbjct: 438 KYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWI 496
Query: 443 INYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500
+ Y P D Y+HRVGRTAR GR G+A+ + + L+ + + S++
Sbjct: 497 VQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILHPEELGFLRYLKQ-------SKVPLS 548
Query: 501 QSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
+ WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 549 EFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 584
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 512 (185.3 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 133/370 (35%), Positives = 191/370 (51%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL LS P + + T IQA IPLAL GRDI G+A TGSGKT AF +P LE
Sbjct: 50 AFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLE 109
Query: 186 RLLYRPKRIPAIRV--LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+L YR + ++ L+L+PTRELAVQ ++ KI + LV+GG S + + AL
Sbjct: 110 KL-YREQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVREEAEAL 168
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
M +I++ TPGR++ HL + R+++LGF ++ LV+ P R
Sbjct: 169 SRM-NILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTR 227
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLS--ADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
QT+LFSAT ++ V +L +LSL P +S A+ + PSTL + L
Sbjct: 228 QTLLFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLD---TL 284
Query: 362 LSLCSKTFTSKVIIF-SGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ 419
SK+++F S KQ + + + +HG Q RL+ + F
Sbjct: 285 WGFIKANLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVTKRFDSS 344
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
L ATDV ARG+D GV V+ P D Y+HRVGRTAR REG AV F+ ++
Sbjct: 345 KHACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLDPSEE 404
Query: 480 S-LLKAIAKR 488
+ +LK + ++
Sbjct: 405 AGMLKRLERK 414
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 134/405 (33%), Positives = 206/405 (50%)
Query: 94 EDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQA 153
++Y P E+D GD++S + G + +L +S +++A + G K PIQ
Sbjct: 89 QEYAPSYEND-GGIGDSESVGSSGGGDGL---AIADLGISPEIVKALKGRGIEKLFPIQK 144
Query: 154 ACIPLALTGRDICGSAITGSGKTAAFALPTLERLL-YRPK--RIPAIRVLILTPTRELAV 210
A + A+ GRD+ G A TG+GKT AF +P +++++ + K R + L+L PTRELA
Sbjct: 145 AVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELAR 204
Query: 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXX 270
QV + A D C + GG Q L D+ V TPGR+ID ++ +
Sbjct: 205 QVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRG-ALNLS 261
Query: 271 XXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330
++L++GF+ ++ +++ P +RQ+M+FSAT+ + L K L PL +
Sbjct: 262 EVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTI 321
Query: 331 S--ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388
D K +T + L+ K K I+F+ TK+ A RL
Sbjct: 322 DLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKG--GKCIVFTQTKRDADRLA- 378
Query: 389 LFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
FGLA + K LHG+++QAQR L FR + L+ATDVAARGLD+ V VI+Y
Sbjct: 379 -FGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYEL 437
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492
P + ++VHR GRT RAG++G A+ + +K I K GS+
Sbjct: 438 PNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSR 482
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 512 (185.3 bits), Expect = 1.7e-48, P = 1.7e-48
Identities = 126/396 (31%), Positives = 205/396 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 187 LLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR + + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 131 L-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN 189
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
++ +I+V TPGR++ H+ ++S R+L++GF+ ++ ++ PK+RQ
Sbjct: 190 NI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQ 248
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 249 TLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKY-STPATLEQNYIVCELQQKISVLYSF 307
Query: 365 CSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 422
K ++ FS K+ + ++ L + LHG Q +R+E F ++
Sbjct: 308 LRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAA 367
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L ATD+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++++++
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV 427
Query: 483 KAIAKRAGSKLKSRIVAEQSIT---KWSKIIEQMED 515
+ + ++ + +I E+ I K I+ Q +D
Sbjct: 428 QQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQD 463
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 512 (185.3 bits), Expect = 2.2e-48, P = 2.2e-48
Identities = 126/396 (31%), Positives = 205/396 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 187 LLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR + + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 131 L-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN 189
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
++ +I+V TPGR++ H+ ++S R+L++GF+ ++ ++ PK+RQ
Sbjct: 190 NI-NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQ 248
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 249 TLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKY-STPATLEQNYIVCELQQKISVLYSF 307
Query: 365 CSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 422
K ++ FS K+ + ++ L + LHG Q +R+E F ++
Sbjct: 308 LRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAA 367
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482
L ATD+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++++++
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMV 427
Query: 483 KAIAKRAGSKLKSRIVAEQSIT---KWSKIIEQMED 515
+ + ++ + +I E+ I K I+ Q +D
Sbjct: 428 QQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQD 463
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 126/357 (35%), Positives = 182/357 (50%)
Query: 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALP 182
+ANSF LNL LL E +G++ TPIQA +P L G+D+ G TGSGKTAAF L
Sbjct: 2 NANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG 61
Query: 183 TLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQET 241
L L + R+ A L+L PTRELA QV + I + + +I+ + GG+ Q
Sbjct: 62 VLSNLNVKRFRVQA---LVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIG 118
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
+L I+V TPGR++DHL R+LE+GF + ++ P
Sbjct: 119 SLEHGAHILVGTPGRILDHLSKDR-IDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPA 177
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT+LFSAT ++++ + S+T+ L A ++ EA+
Sbjct: 178 ERQTLLFSATYPASIEQIAQ-SVTRNA-LMIKVEATHDTSSIRQYFYKVEGSAARDEALE 235
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
L TS V+ F TK+ + + ELHG++ Q +R +AL F + +
Sbjct: 236 TLLLHHQPTSSVV-FCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSI 294
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLD+ + V NY RD +VHR+GRT RAG +G A +F +DN+
Sbjct: 295 SILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 148/460 (32%), Positives = 229/460 (49%)
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAP--ADGASFHANSFMEL-NL-SRPLLRACEALGYS 146
++ E E ED A D++ P GA F SF L NL + L+A E +G+
Sbjct: 146 EEPEGAGEEPEDGVKEADDSEVPSLPLGVTGA-FEDTSFASLSNLVNENTLKAIEEMGFK 204
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTP 204
T IQ I L GRD+ +A TGSGKT AF +P +E L+ + K +P VLIL+P
Sbjct: 205 HMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIE-LIVKLKFMPRNGTGVLILSP 263
Query: 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
TRELA+Q +++++ L++GG + + L + +IVVATPGR++DH++N+
Sbjct: 264 TRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATPGRLLDHMQNT 323
Query: 265 MSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324
R+L++GF E+ ++++L P RRQTMLFSAT T V++L ++SL
Sbjct: 324 PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISL 383
Query: 325 TK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQA 382
K PL + D K +T+ + +L + K KV++F S
Sbjct: 384 KKEPLYVGVDDD-KEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSV 442
Query: 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442
+ ++L L +HG Q +R F L+ TDVAARGLDI V +
Sbjct: 443 KYHYELL-NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWI 501
Query: 443 INYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500
+ Y P D Y+HRVGRTAR GR G+A+ + + L+ + + S++
Sbjct: 502 VQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKVPLN 553
Query: 501 QSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
Q WSK+ + ++ Q+ +++ L K+ EA K+
Sbjct: 554 QFDFSWSKVSD-IQSQLEKLIEKNY---FLHKSAQEAYKS 589
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 133/372 (35%), Positives = 191/372 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + N +L A LG+++PTPIQA P+AL GRD+ G A TGSGKT A+ LP L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 187 LLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+ +P+ + VLIL PTRELAVQ+ K + +R + GG Q LR
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
+IV+ATPGR+ID L R+L++GF +I ++V RQ
Sbjct: 287 RGVEIVIATPGRLIDMLE-CQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 305 TMLFSATLTEDVDELIKLSLTKPLR-LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
T+L+SAT +V+ L + L P + + K ++ N+ LL+
Sbjct: 346 TLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNR---LLT 402
Query: 364 LCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L + SK++IF TK+ ++ + A +HG+ TQ++R L F+
Sbjct: 403 LLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSP 462
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DND--- 478
+ ATDVAARGLD+ ++ V+NY P L Y+HR+GRT RAG +G A TF T DN
Sbjct: 463 IMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFA 522
Query: 479 RSLLKAIAKRAG 490
R L+K I + AG
Sbjct: 523 RELVK-ILQEAG 533
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 160/523 (30%), Positives = 256/523 (48%)
Query: 34 KPSKRAKQSPWDFAAY----SESVSDEHFRRRT----TSVDFKITKSLQQRSVPIVDNDH 85
KPSK++ D AA SES + ++R D K K+ + + P D+
Sbjct: 87 KPSKKSSILTSDEAATQSLNSESKKKKKKKKRKIVDDAGPDSKKAKT-EDKGEP-GDSAQ 144
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELN--LSRPLLRACEAL 143
+ E + + KP+ +DD + S GA F SF L ++ LRA + +
Sbjct: 145 APEETENSME-KPDKDDDT----EVPSLPLGLTGA-FEDTSFASLTDLVNENTLRAIKEM 198
Query: 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLI 201
G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + + +P VLI
Sbjct: 199 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPRNGTGVLI 257
Query: 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 261
L+PTRELA+Q +++++ L++GG + + L + +IVVATPGR++DH+
Sbjct: 258 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHM 317
Query: 262 RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321
+N+ R+L++GF E+ ++++L P RRQTMLFSAT T V++L +
Sbjct: 318 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 377
Query: 322 LSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGT 379
+SL K PL + D K +T+ + +L + K K+++F S
Sbjct: 378 ISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSC 436
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K + ++L L +HG Q +R F L+ TDVAARGLDI V
Sbjct: 437 KSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEV 495
Query: 440 QTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497
++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + + S++
Sbjct: 496 DWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKV 547
Query: 498 VAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
+ WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 548 PLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 586
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 160/523 (30%), Positives = 256/523 (48%)
Query: 34 KPSKRAKQSPWDFAAY----SESVSDEHFRRRT----TSVDFKITKSLQQRSVPIVDNDH 85
KPSK++ D AA SES + ++R D K K+ + + P D+
Sbjct: 112 KPSKKSSILTSDEAATQSLNSESKKKKKKKKRKIVDDAGPDSKKAKT-EDKGEP-GDSAQ 169
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELN--LSRPLLRACEAL 143
+ E + + KP+ +DD + S GA F SF L ++ LRA + +
Sbjct: 170 APEETENSME-KPDKDDDT----EVPSLPLGLTGA-FEDTSFASLTDLVNENTLRAIKEM 223
Query: 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLI 201
G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + + +P VLI
Sbjct: 224 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPRNGTGVLI 282
Query: 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 261
L+PTRELA+Q +++++ L++GG + + L + +IVVATPGR++DH+
Sbjct: 283 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHM 342
Query: 262 RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321
+N+ R+L++GF E+ ++++L P RRQTMLFSAT T V++L +
Sbjct: 343 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 402
Query: 322 LSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGT 379
+SL K PL + D K +T+ + +L + K K+++F S
Sbjct: 403 ISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSC 461
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K + ++L L +HG Q +R F L+ TDVAARGLDI V
Sbjct: 462 KSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEV 520
Query: 440 QTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497
++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + + S++
Sbjct: 521 DWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKV 572
Query: 498 VAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
+ WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 573 PLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 611
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 160/523 (30%), Positives = 256/523 (48%)
Query: 34 KPSKRAKQSPWDFAAY----SESVSDEHFRRRT----TSVDFKITKSLQQRSVPIVDNDH 85
KPSK++ D AA SES + ++R D K K+ + + P D+
Sbjct: 83 KPSKKSSILTSDEAATQSLNSESKKKKKKKKRKIVDDAGPDSKKAKT-EDKGEP-GDSAQ 140
Query: 86 SDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELN--LSRPLLRACEAL 143
+ E + + KP+ +DD + S GA F SF L ++ LRA + +
Sbjct: 141 APEETENSME-KPDKDDDT----EVPSLPLGLTGA-FEDTSFASLTDLVNENTLRAIKEM 194
Query: 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLI 201
G++ T IQ I L GRD+ +A TGSGKT AF +P +E L+ + + +P VLI
Sbjct: 195 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPRNGTGVLI 253
Query: 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL 261
L+PTRELA+Q +++++ L++GG + + L + +IVVATPGR++DH+
Sbjct: 254 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHM 313
Query: 262 RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321
+N+ R+L++GF E+ ++++L P RRQTMLFSAT T V++L +
Sbjct: 314 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 373
Query: 322 LSLTK-PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGT 379
+SL K PL + D K +T+ + +L + K K+++F S
Sbjct: 374 ISLKKEPLYVGVDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSC 432
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K + ++L L +HG Q +R F L+ TDVAARGLDI V
Sbjct: 433 KSVKYHYELL-NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEV 491
Query: 440 QTVINYACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497
++ Y P D Y+HRVGRTAR GR G+A+ + + L+ + + S++
Sbjct: 492 DWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKV 543
Query: 498 VAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
+ WSKI + ++ Q+ +++ L K+ EA K+
Sbjct: 544 PLSEFEFSWSKISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 582
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 133/392 (33%), Positives = 201/392 (51%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F +L L+ +L A +G+ PTPIQAA IP+ L GRD G A TG+GKTAAF+LP
Sbjct: 25 AIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPL 84
Query: 184 LERL---LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQ 239
L +L Y+P+ I ++ PTRELA+QV + I+ + Q ++ + GG S Q
Sbjct: 85 LNKLNLSQYKPQAI------VMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQ 138
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC 299
AL+S IVV TPGR+ D + +L++GF ++ ++
Sbjct: 139 MRALKSGAHIVVGTPGRVKDLITRDR-LHLDECHTFILDEADEMLKMGFVDDVTWIMEQA 197
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEA 359
P+ Q +LFSAT+ V E+++ L P + S + T+ ++
Sbjct: 198 PESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ---TVAKVEQQYWVVKGVEKDE 254
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+ L T I+F T+Q RL KAA LHG++ Q+ R ++ ++
Sbjct: 255 AMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQG 314
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+D L+ATDV ARGLD+ + V NY P D+ SY+HR+GRT RAGR+G A+ V N
Sbjct: 315 VIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQI 374
Query: 480 SLLKAIAKRAGSKLKS-RI-----VAEQSITK 505
+L+ I + S ++ ++ VAE +TK
Sbjct: 375 RMLRTIERVTRSSMEEIQLPHRDKVAESRLTK 406
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 133/392 (33%), Positives = 201/392 (51%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F +L L+ +L A +G+ PTPIQAA IP+ L GRD G A TG+GKTAAF+LP
Sbjct: 25 AIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPL 84
Query: 184 LERL---LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQ 239
L +L Y+P+ I ++ PTRELA+QV + I+ + Q ++ + GG S Q
Sbjct: 85 LNKLNLSQYKPQAI------VMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQ 138
Query: 240 ETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC 299
AL+S IVV TPGR+ D + +L++GF ++ ++
Sbjct: 139 MRALKSGAHIVVGTPGRVKDLITRDR-LHLDECHTFILDEADEMLKMGFVDDVTWIMEQA 197
Query: 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEA 359
P+ Q +LFSAT+ V E+++ L P + S + T+ ++
Sbjct: 198 PESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ---TVAKVEQQYWVVKGVEKDE 254
Query: 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
+ L T I+F T+Q RL KAA LHG++ Q+ R ++ ++
Sbjct: 255 AMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQG 314
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
+D L+ATDV ARGLD+ + V NY P D+ SY+HR+GRT RAGR+G A+ V N
Sbjct: 315 VIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQI 374
Query: 480 SLLKAIAKRAGSKLKS-RI-----VAEQSITK 505
+L+ I + S ++ ++ VAE +TK
Sbjct: 375 RMLRTIERVTRSSMEEIQLPHRDKVAESRLTK 406
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 147/452 (32%), Positives = 226/452 (50%)
Query: 99 EDEDDFSNAGDTKSFFAP--ADGASFHANSFMEL-NL-SRPLLRACEALGYSKPTPIQAA 154
E ED A D++ P GA F SF L NL + L+A E +G+ T IQ
Sbjct: 142 EPEDGVKEADDSEVPSLPLGVTGA-FEDTSFASLSNLVNENTLKAIEEMGFKHMTEIQHK 200
Query: 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTRELAVQV 212
I L GRD+ +A TGSGKT AF +P +E L+ + K +P VLIL+PTRELA+Q
Sbjct: 201 SIRPLLEGRDLLAAAKTGSGKTLAFLIPVIE-LIVKLKFMPRNGTGVLILSPTRELAMQT 259
Query: 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXX 272
+++++ L++GG + + L + +IVVATPGR++DH++N+
Sbjct: 260 FGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNL 319
Query: 273 XXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLS 331
R+L++GF E+ ++++L P RRQTMLFSAT T V++L ++SL K PL +
Sbjct: 320 QCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVG 379
Query: 332 ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQAAHRLKILF 390
D K +T+ + +L + K KV++F S + ++L
Sbjct: 380 VDDD-KEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELL- 437
Query: 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450
L +HG Q +R F L+ TDVAARGLDI V ++ Y P D
Sbjct: 438 NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDD 497
Query: 451 LTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
Y+HRVGRTAR GR G+A+ + + L+ + + S++ Q WSK
Sbjct: 498 PKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKVPLNQFDFSWSK 549
Query: 509 IIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
+ + ++ Q+ +++ L K+ EA K+
Sbjct: 550 VSD-IQSQLEKLIEKNY---FLHKSAQEAYKS 577
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 511 (184.9 bits), Expect = 3.4e-48, P = 3.4e-48
Identities = 129/372 (34%), Positives = 184/372 (49%)
Query: 109 DTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGS 168
DT+ + + F + LS P+ + GY PTPIQ IP+ L G+D+
Sbjct: 80 DTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAM 139
Query: 169 AITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228
A TGSGKTA F +P ERL + A R LIL+PTRELA+Q +++ +FT +R
Sbjct: 140 ARTGSGKTACFLIPMFERLKTHSAQTGA-RALILSPTRELALQTMKFTKELGKFTGLRTA 198
Query: 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGF 288
L++GG + Q AL PDI++ATPGR++ H+ M+ L E+GF
Sbjct: 199 LILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVDSIDW--LFEMGF 255
Query: 289 SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXX 348
+ ++ E++ P QT+LFSATL + + E + LT+P+ + D AK L
Sbjct: 256 AEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFL 315
Query: 349 XXXXXXXNQEAVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406
+ AVLL L + ++F TK A L L + ++ L Q
Sbjct: 316 VREDT---KAAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQ 372
Query: 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466
R L F LI TD+AARGLDI + VINY+ P ++HRVGR ARAGR
Sbjct: 373 TARKINLAKFTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGR 432
Query: 467 EGYAVTFVTDND 478
G A + V ++
Sbjct: 433 SGTAYSLVAPDE 444
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 512 (185.3 bits), Expect = 3.6e-48, P = 3.6e-48
Identities = 143/459 (31%), Positives = 224/459 (48%)
Query: 36 SKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSV-PIVDNDHSDSEFDQHE 94
+K +KQ D YS D+ + S+ K +S +R + P+ DHS E+ +
Sbjct: 209 NKSSKQQQDDDVDYSSLDDDDGYFDDEESL--KNGQSKGKRIIEPLPPIDHSKEEYIEFN 266
Query: 95 DYKPEDEDDFSNAGDTKSFFAPAD------GASF--HANSFMELNLSRPLLRACEALGYS 146
E+ D +N + + F + G SF LL+A
Sbjct: 267 KIFYEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIE 326
Query: 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLILTP 204
PTPIQ IP+AL+GRD+ A TGSGKTA F P++ ++ +P ++ L L P
Sbjct: 327 TPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAP 386
Query: 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS 264
TRELA Q++ K +++ ++ ++ GG+S + Q L++ +I+VATPGR+ID ++
Sbjct: 387 TRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLK 446
Query: 265 MSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSL 324
+ ++ + GF ++ +V RQT+LFSAT +V+E + L
Sbjct: 447 -ATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTIL 505
Query: 325 TKPLRLSADPSAKRPSTLTXXXXXXXXXXX-----XNQEAVLLSLCSKTFTSKVIIFSGT 379
+ P+++S S +T NQ A+LLS S V+IF T
Sbjct: 506 SDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGS------VLIFVST 559
Query: 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439
K A +L + LHG+ Q +R + ++ F++ ++ LIATDVAARGLDI +
Sbjct: 560 KVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLI 619
Query: 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
+ V+NY RD+ S+ HR+GRT RAG G A T +T D
Sbjct: 620 KNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 142/428 (33%), Positives = 220/428 (51%)
Query: 84 DHSDSEFDQHEDY---KPEDEDDFSNAGDTKSFFAPADG---ASFHA-NSFMELNLSRPL 136
+ +SE ++ +D K E ED + + G A + A +F E NL +
Sbjct: 68 EEKESEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENV 127
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP- 195
L C+ + KP+PIQ+ P L GRD+ G A TGSGKT AF +P + +L + K+I
Sbjct: 128 LDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGG 185
Query: 196 -AIRV----LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIV 250
+ +V L+L+PTRELAVQ+ ++ + + ++ V GG S Q +A+RS DIV
Sbjct: 186 GSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIV 245
Query: 251 VATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSA 310
+ TPGR+ D + +++ R+L++GF + ++ K RQ ++FSA
Sbjct: 246 IGTPGRLRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSA 304
Query: 311 TLTEDVDELIKLSLT-KPLRL---SADPSAKRPSTLTXXXXXXXXXXXXNQEAV-LLSLC 365
T DV +L + + P+++ S D +A +Q + LL
Sbjct: 305 TWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHD---VMQIIEVLDERARDQRLIALLEKY 361
Query: 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425
K+ ++V++F+ K A RL+ KA +HGN Q++R +L LF++ L+
Sbjct: 362 HKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLV 421
Query: 426 ATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL---L 482
ATDVAARGLDI V+ VINY P YVHR+GRT RAG++G A TF T ++ L L
Sbjct: 422 ATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGEL 481
Query: 483 KAIAKRAG 490
+ + AG
Sbjct: 482 VNVLREAG 489
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 495 (179.3 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 118/356 (33%), Positives = 183/356 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+ Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 185 ERLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
++ + + P +I+ PTREL Q+H+ ++ + ++R V GG S Q A
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L+ +IVV TPGR+IDH++ + R+ ++GF ++ +
Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD 431
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSAT + +++L + L P+R+ + +T N +
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNW--LTR 489
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 490 RLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIP 549
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 550 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 605
Score = 41 (19.5 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDSSN 85
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 496 (179.7 bits), Expect = 5.5e-48, Sum P(2) = 5.5e-48
Identities = 122/388 (31%), Positives = 199/388 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 187 LLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR + + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 131 L-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN 189
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
++ +I+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQ
Sbjct: 190 NI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQ 248
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 249 TLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKY-STPATLEQNYIVCELQQKISVLYSF 307
Query: 365 CSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 422
K ++ FS K+ + ++ L + LHG Q +R+E F ++
Sbjct: 308 LRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRSA 367
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSL 481
L ATD+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++ + +
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM 427
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKI 509
++ + ++ + +I E+ I K+
Sbjct: 428 VQQLLQKKVPVKEIKINPEKLIDVQKKL 455
Score = 37 (18.1 bits), Expect = 5.5e-48, Sum P(2) = 5.5e-48
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 531 RKAEMEATKAENMIAHKEEIF 551
R+A EA+K + + +EE F
Sbjct: 754 REARREASKRQAKLNDEEEAF 774
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 504 (182.5 bits), Expect = 5.5e-48, P = 5.5e-48
Identities = 142/433 (32%), Positives = 217/433 (50%)
Query: 100 DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLA 159
D D++ GD + A DG + +L+L + L + E G + PIQ A + A
Sbjct: 81 DHDEYDLDGDNNNVEAD-DGEEL---AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPA 136
Query: 160 LTGRDICGSAITGSGKTAAFALPTLERLL-----Y----RPKRIPAIRVLILTPTRELAV 210
L GRDI A TG+GKT AF +P ++RL Y R R+P + L+L PTRELA
Sbjct: 137 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLP--KFLVLAPTRELAK 194
Query: 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXX 270
QV I++ A + C V GG+S +Q++AL D+VV TPGR+ID L S
Sbjct: 195 QVEKEIKESAPYLSTVC--VYGGVSYTIQQSALTRGVDVVVGTPGRIID-LIEGRSLKLG 251
Query: 271 XXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330
++L +GF + ++ P +RQ+MLFSAT+ V +L + L PL +
Sbjct: 252 EVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNI 311
Query: 331 S--ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388
D K + + L+++ +K K I+F+ TK+ A + +
Sbjct: 312 DLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKG--GKTIVFTQTKRDADEVSL 369
Query: 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448
+ A LHG+++Q QR L FR+ L+ATDVA+RGLDI V VI+Y P
Sbjct: 370 ALSNSIATEA-LHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELP 428
Query: 449 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
D ++VHR GRT RAG+EG A+ T + + ++++ + G + ++ ++
Sbjct: 429 NDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFE--FISPPTV---GD 483
Query: 509 IIEQMEDQVAAIL 521
++E DQV A L
Sbjct: 484 LLESSADQVVATL 496
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 146/452 (32%), Positives = 229/452 (50%)
Query: 97 KPEDEDDFSNAGDTKSFFAPADGASFHANSFMEL-NL-SRPLLRACEALGYSKPTPIQAA 154
KP+DE + S + S GA F SF L NL + L+A + +G++ T IQ
Sbjct: 157 KPDDEGEDS---EVPSLPLGLTGA-FEDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHK 212
Query: 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTRELAVQV 212
I L GRD+ +A TGSGKT AF +P +E L+ + K +P VLIL+PTRELA+Q
Sbjct: 213 SIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLKFMPRNGTGVLILSPTRELAMQT 271
Query: 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXX 272
+++++ L++GG + + L + +IVVATPGR++DH++N+
Sbjct: 272 FGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNL 331
Query: 273 XXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLS 331
R+L++GF E+ ++++L P RRQTMLFSAT T V++L ++SL K PL +
Sbjct: 332 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVG 391
Query: 332 ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQAAHRLKILF 390
D K +T+ + +L + K K+++F S K + ++L
Sbjct: 392 VDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELL- 449
Query: 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450
L +HG Q +R F L+ TDVAARGLDI V ++ Y P D
Sbjct: 450 NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDD 509
Query: 451 LTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
Y+HRVGRTAR GR G+A+ + + L+ + + S++ + WSK
Sbjct: 510 PKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKVPLSEFEFSWSK 561
Query: 509 IIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
I + ++ Q+ +++ L K+ EA K+
Sbjct: 562 ISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 589
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 146/452 (32%), Positives = 229/452 (50%)
Query: 97 KPEDEDDFSNAGDTKSFFAPADGASFHANSFMEL-NL-SRPLLRACEALGYSKPTPIQAA 154
KP+DE + S + S GA F SF L NL + L+A + +G++ T IQ
Sbjct: 153 KPDDEGEDS---EVPSLPLGLTGA-FEDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHK 208
Query: 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTRELAVQV 212
I L GRD+ +A TGSGKT AF +P +E L+ + K +P VLIL+PTRELA+Q
Sbjct: 209 SIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLKFMPRNGTGVLILSPTRELAMQT 267
Query: 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXX 272
+++++ L++GG + + L + +IVVATPGR++DH++N+
Sbjct: 268 FGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNL 327
Query: 273 XXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLS 331
R+L++GF E+ ++++L P RRQTMLFSAT T V++L ++SL K PL +
Sbjct: 328 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVG 387
Query: 332 ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQAAHRLKILF 390
D K +T+ + +L + K K+++F S K + ++L
Sbjct: 388 VDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELL- 445
Query: 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450
L +HG Q +R F L+ TDVAARGLDI V ++ Y P D
Sbjct: 446 NYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDD 505
Query: 451 LTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
Y+HRVGRTAR GR G+A+ + + L+ + + S++ + WSK
Sbjct: 506 PKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKVPLSEFEFSWSK 557
Query: 509 IIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
I + ++ Q+ +++ L K+ EA K+
Sbjct: 558 ISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 585
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 134/368 (36%), Positives = 195/368 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL++S L + Y +PTPIQAA P L GRD+ G A TGSGKT AF +P L+
Sbjct: 169 FDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 187 L--LYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L L K +P RVL+++PTRELA+Q + + + Q T+++ +V GG Q A +
Sbjct: 227 LNGLSDNKSVP--RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK 284
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK--- 301
+ +++ TPGR++D L N S R+L+ GF +I ++ P
Sbjct: 285 NA-SVIIGTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTR 342
Query: 302 --RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEA 359
RQT+ FSAT E V L L P++++ S + ++ ++E
Sbjct: 343 NGSRQTVFFSATWPESVRALAATFLKDPVKITIG-SDELAASQNITQIVEILDDPRSKER 401
Query: 360 VLLSLCSKTFTS-----KVIIFSGTKQAAHRLKILFGLAALK--AAELHGNLTQAQRLEA 412
+L +L K +S K++IF K+ A R++ G A K +HG+++Q RL+A
Sbjct: 402 MLDNLLRKHLSSGGKDDKILIFVLYKKEAARVE---GTLARKYNVVGIHGDMSQGARLQA 458
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+ L+ATDVAARGLDI VQ VIN P + YVHR+GRT RA +G A+T
Sbjct: 459 LNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAIT 518
Query: 473 FVTDNDRS 480
F T D+S
Sbjct: 519 FFTPQDKS 526
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 480 (174.0 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 120/395 (30%), Positives = 190/395 (48%)
Query: 90 FDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPT 149
+ +H D + D +F E +L+ + G+ KPT
Sbjct: 92 YSEHPDVAARSDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPT 151
Query: 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI--PAIRVLILTPTRE 207
PIQ P+AL+GRD+ G A TGSGKT ++ LP++ + +P+ VL+L PTRE
Sbjct: 152 PIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRE 211
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSX 267
LAVQ+ + K + + IR V GG Q L +I +ATPGR+ID L +
Sbjct: 212 LAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTN 271
Query: 268 XXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
R+L++GF +I ++V RQT+++SAT ++V +L + L P
Sbjct: 272 LKRVTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDYLNDP 330
Query: 328 LRLSADPSAKRPS-TLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRL 386
++++ S T+T ++ L +K+++F+ TK+ +
Sbjct: 331 IQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFASTKRTCDEI 390
Query: 387 KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446
A +HG+ Q +R L+ FRK ++ATDVAARG+D+ G+ VINY
Sbjct: 391 TTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYD 450
Query: 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
P ++ YVHR+GRT R G G A++F T+ + L
Sbjct: 451 MPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKL 485
Score = 38 (18.4 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 457 RVGRTARAGREGY 469
R GR R GR GY
Sbjct: 528 RGGRGGRGGRGGY 540
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 507 (183.5 bits), Expect = 7.6e-48, P = 7.6e-48
Identities = 122/400 (30%), Positives = 209/400 (52%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A + ++ L + +A E G+++PTPIQ IP + G+D+ + TGSGKTAAF +P
Sbjct: 23 AGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPM 82
Query: 184 LERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L++L R IR L+++PTRELA+Q +++++ +FT +RC +VGG + Q + +
Sbjct: 83 LQKLKRRDTT--GIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTI 140
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
PDI++ATPGR++ H+ M RL E+GF ++ E ++ P+ R
Sbjct: 141 HENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESR 199
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSATL + + + K LT P+ + D K L+ + LL
Sbjct: 200 QTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPD---EKLFALLH 256
Query: 364 LCSKTF--TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
LC + + ++F T + + + A + + ++ L R ++ F ++
Sbjct: 257 LCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQN 316
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
+ L+ TDVAARG+DI + TVIN P +VHRVGR ARAGR G A++ + +++
Sbjct: 317 NILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPY 376
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSK-IIEQMEDQVAAI 520
L + G + +++S K + +I ++ D + ++
Sbjct: 377 LTDLFMFLGKPIN--FASDKSEYKEDETLIGRVPDSIVSL 414
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 126/429 (29%), Positives = 206/429 (48%)
Query: 67 FKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANS 126
FK S++ R+ ++ D + + DE D D + + +
Sbjct: 164 FKPLVSVKDRAKDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPITT 223
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E+ + +P++ G KP+PIQ +P+ L+GRD+ G A TGSGKT F LP +
Sbjct: 224 FKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLF 283
Query: 187 LLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQ-------FTDIRCCLVVGGL 234
L ++P I+ LIL P+RELA Q + ++ +R L +GG+
Sbjct: 284 ALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGI 343
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHE 294
+ QE + +++ATPGR++D L N RL++LGF +I
Sbjct: 344 DLREQEHIFKKGVHMIIATPGRLLD-LLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRS 402
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXX 354
++ +RQT+LFSAT+ + + E + +L P+ ++ R
Sbjct: 403 VLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVG----RAGAANLNVTQEVEFVK 458
Query: 355 XNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
+ V L C + V+IF K+ + L ++A +HG+ +Q +R A++
Sbjct: 459 PEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIK 518
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
FR+ D L+ATDVA++GLD +Q VIN+ PR++ +Y+HR+GRT R G +G A TF+
Sbjct: 519 AFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFI 578
Query: 475 TDND-RSLL 482
N+ SLL
Sbjct: 579 NKNNTESLL 587
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 140/444 (31%), Positives = 227/444 (51%)
Query: 79 PIVDNDHSDSEFDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLR 138
P+ + D + E +Q + E S TK+ FA +G +AN LL+
Sbjct: 34 PMEEEDEEEVEEEQKHQTEESSETKVSEFL-TKTTFASLEG-KVNAN----------LLK 81
Query: 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPA 196
A + LG++ T IQA I L G+D+ SA TGSGKT AF LP +E LL++ K+
Sbjct: 82 AVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIE-LLHKLNWKQHNG 140
Query: 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR 256
V+I++PTREL++Q + ++ ++ + +++ LV+GG + ++ L I+VATPGR
Sbjct: 141 TGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGR 200
Query: 257 MIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316
++DHL+N+ + R+L++GF E+ +++R PK+RQ+MLFSAT + V
Sbjct: 201 LLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKV 260
Query: 317 DELIKLSL-TKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVII 375
DEL+KL+L + P+R+S A+ +T+ + +L + K T KV++
Sbjct: 261 DELVKLALHSNPVRVSVHEKAEE-ATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMV 319
Query: 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435
F + + L + +HG Q +R F + L+ TDVAARGLD
Sbjct: 320 FFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLD 379
Query: 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDNDRSLLKAIAKRAGSKLK 494
I V ++ Y + Y+HRVGRTAR G A+ + + L+ + K A L
Sbjct: 380 IPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEELGFLRYL-KAAKVTLN 438
Query: 495 SRIVAEQSITKWSKIIEQMEDQVA 518
E S +K + I Q+E+ ++
Sbjct: 439 E---FEFSWSKVANIQSQLENLIS 459
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 507 (183.5 bits), Expect = 7.8e-48, P = 7.8e-48
Identities = 124/369 (33%), Positives = 192/369 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 75 FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE- 133
Query: 187 LLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LLYR + A + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 134 LLYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIH 193
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
+ ++++ TPGR++ H+ + R+L++GF+ ++ ++ PK+RQ
Sbjct: 194 HI-NMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQ 252
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTXXXXXXXXXXXXNQEAVLL 362
T+LFSAT T+ V +L +LSL P + AK P+TL N VL
Sbjct: 253 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKIN---VLY 309
Query: 363 SLCSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQH 420
S K ++ F+ K+ + ++ L L LHG Q +R+E F ++
Sbjct: 310 SFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKK 369
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV-TFVTDNDR 479
L ATD+AARGLD V VI + CP D +Y+HRVGRTAR G A+ + ++
Sbjct: 370 AAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK 429
Query: 480 SLLKAIAKR 488
+++ +A+R
Sbjct: 430 GMVEQLAQR 438
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 507 (183.5 bits), Expect = 7.8e-48, P = 7.8e-48
Identities = 124/369 (33%), Positives = 192/369 (52%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 75 FSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE- 133
Query: 187 LLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
LLYR + A + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 134 LLYRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIH 193
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
+ ++++ TPGR++ H+ + R+L++GF+ ++ ++ PK+RQ
Sbjct: 194 HI-NMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQ 252
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTXXXXXXXXXXXXNQEAVLL 362
T+LFSAT T+ V +L +LSL P + AK P+TL N VL
Sbjct: 253 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKIN---VLY 309
Query: 363 SLCSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQH 420
S K ++ F+ K+ + ++ L L LHG Q +R+E F ++
Sbjct: 310 SFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKK 369
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV-TFVTDNDR 479
L ATD+AARGLD V VI + CP D +Y+HRVGRTAR G A+ + ++
Sbjct: 370 AAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK 429
Query: 480 SLLKAIAKR 488
+++ +A+R
Sbjct: 430 GMVEQLAQR 438
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 132/377 (35%), Positives = 193/377 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +LNL +++ G+S TPIQ +PL+L G+D+ G A TG+GKTAAF + +
Sbjct: 3 FADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTK 62
Query: 187 LLYR----PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV----GGLSTKM 238
LL +R P R +IL PTREL VQ IEK AQ C + GG+
Sbjct: 63 LLRSGRGGERRHP--RAIILAPTRELVVQ----IEKDAQVLGAHCGFTIQAIYGGVDYMK 116
Query: 239 QETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 298
Q+ AL+ D+VV TPGR+ID+L+ + R+ ++GF A++ ++R
Sbjct: 117 QKNALKEGADVVVGTPGRLIDYLKQKV-YSLKEIEMLVIDEADRMFDMGFIADLRFILRR 175
Query: 299 CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXN 356
P +RQ ++FSATL + V EL + P +++ P T
Sbjct: 176 LPPYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQM---TAERVEQVLYHVGRKE 232
Query: 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416
+ +LL L K + +IF TK+ A L + G++ Q +RL+ LE F
Sbjct: 233 KFPLLLGLLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDF 292
Query: 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
+ + +IATDVA+RGL I GV VINY P+D YVHR+GRTARAG EG A++ +
Sbjct: 293 KSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADE 352
Query: 477 NDRSLLKAIAKRAGSKL 493
+ L+AI + K+
Sbjct: 353 DGAFHLEAIHEYIKDKI 369
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 501 (181.4 bits), Expect = 1.5e-47, P = 1.5e-47
Identities = 126/394 (31%), Positives = 202/394 (51%)
Query: 99 EDEDDFSNAGDTKSFFAP-ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIP 157
++E++ + + + + P D AS + F +L ++ L+ + + T IQ IP
Sbjct: 23 KEEEELAKLQERINNYDPKTDEAS--VSQFSDLPITENTLKGLKEATFVSLTDIQKKTIP 80
Query: 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRVLILTPTRELAVQVHSM 215
+AL G D+ G+A TGSGKT AF +P +E L+ R K + LI++PTRELAVQ+ +
Sbjct: 81 IALKGEDLMGTARTGSGKTLAFLIPVIESLI-RNKITEYDGLAALIVSPTRELAVQIFEV 139
Query: 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXX 275
+ KI ++ LV GG + ++ + M +I+V TPGR+ HL ++
Sbjct: 140 LTKIGKYNTFSAGLVTGGKDVQFEKERVSRM-NILVGTPGRISQHLNEAVGMETSNLQVL 198
Query: 276 XXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS 335
R L++GF +I ++ P RQT+LFSAT +E V++L +LSLT P ++
Sbjct: 199 VLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSATQSESVNDLARLSLTNPNKIGVSSD 258
Query: 336 AKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQAAHRLKILFGLA- 393
+ +T + VL S SK+++F S +KQ + + L
Sbjct: 259 QEVSATPESLEQYYVKVPLDEKLDVLWSFIKSHLKSKILVFFSSSKQVQYTYETFRTLQP 318
Query: 394 ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452
+ +L+G Q RLE F + QH L ATD+ ARGLD + V+ CP D
Sbjct: 319 GISLMKLYGRHKQTSRLETTMKFSQAQHA-CLFATDIVARGLDFPAIDWVVQVDCPEDAA 377
Query: 453 SYVHRVGRTARAGREGYAVTFVTDNDRS-LLKAI 485
+YVHRVGR+AR GR+G ++ + ++ +LK +
Sbjct: 378 TYVHRVGRSARFGRKGKSLLMLLPSEEEGMLKRL 411
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 490 (177.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 117/356 (32%), Positives = 182/356 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+ Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 185 ERLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
++ + + P +I+ PTREL Q+H+ ++ + ++R V GG S Q A
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L+ +IVV TPGR+IDH++ + R+ ++GF ++ +
Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD 431
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTR 490
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIP 550
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 551 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 41 (19.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDSSN 85
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 477 (173.0 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 122/378 (32%), Positives = 194/378 (51%)
Query: 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203
GY PTPIQ IP+ L GRD+ SA TGSGKTAAF LP + R L K P+ LILT
Sbjct: 223 GYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCESKT-PS--ALILT 279
Query: 204 PTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTRELA+Q+ + +++ ++ L+VGGL Q LR +++ATPGR++D ++
Sbjct: 280 PTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIK 339
Query: 263 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
S S +L++GF ++ +++ P QT+L SAT+ +++L
Sbjct: 340 QS-SVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQ 398
Query: 323 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQA 382
L P+R+ S++ + +L+ K F V++F K
Sbjct: 399 LLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN-DKKLFKPPVLVFVDCKLG 457
Query: 383 AHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441
A L + + + LK+ +H +Q +R L+ + + +++T V RGLD+I V+
Sbjct: 458 ADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRL 517
Query: 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIV 498
V+N+ P + YVH+VGR R G+ G A+TF+ +N + L IAKR GS L +++
Sbjct: 518 VVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLL 577
Query: 499 AEQSITKWSKIIEQMEDQ 516
+ K EQ +D+
Sbjct: 578 NSPYLHD-QKRKEQQKDK 594
Score = 37 (18.1 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 76 RSVPIVDNDHSDSEFDQHEDYKPEDED 102
RS+ I N + D + + KPE ED
Sbjct: 5 RSLKIKRNANEDGKSCTAKKTKPEAED 31
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 137/380 (36%), Positives = 189/380 (49%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L LS+ L + A+ ++PT IQ ACIP L GRD G A TGSGKT AFA P L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
P + + +LTPTRELA+Q+ + +IR ++VGG S Q L+
Sbjct: 64 WSEDPSGMFGV---VLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRK 120
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXR---LLELGFSAEIHELVR-LCPK- 301
P ++ATPGR+ H+ +S LL F+ + + L PK
Sbjct: 121 PHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKD 180
Query: 302 RRQTMLFSATLTEDVDELIKLSLTK---PL---RLSADPSAKRPSTLTXXXXXXXXXXXX 355
+RQT+LF+AT+T+ V L + K PL ++ + + PSTL
Sbjct: 181 KRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHV-- 238
Query: 356 NQEAVLLSL--CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
+EA L L C + IIF A L+ ++ A LH + Q +R +L
Sbjct: 239 -KEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSL 297
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
FR LIATDVA+RGLDI V+ V+NY P D ++HR GRTARAGR G A++F
Sbjct: 298 HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISF 357
Query: 474 VTDNDRSLLKAIAKRAGSKL 493
VT D S ++AI R K+
Sbjct: 358 VTQRDVSRIQAIEDRINKKM 377
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 151/491 (30%), Positives = 240/491 (48%)
Query: 34 KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDF---KITKSLQQRSVPIVDNDHSDSEF 90
KP K+ K+ D A ES + + + SVD + QQ + ++
Sbjct: 73 KPKKKKKKRKLD--ATGESTTSSVKKAKKQSVDTTQASAGEEEQQEEGNLETVKCPENGN 130
Query: 91 DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELN--LSRPLLRACEALGYSKP 148
++ E ED D+ D + GA F SF L+ +S L+ + +G+
Sbjct: 131 NEKEGSAEEDSDE-----DGPQLPSGLTGA-FEDRSFASLSEVVSENTLKGVKEMGFDTM 184
Query: 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTR 206
T IQ I L GRD+ +A TGSGKT AF +P++E L+Y+ K +P V++L+PTR
Sbjct: 185 TEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIE-LIYKLKFMPRNGTGVIVLSPTR 243
Query: 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266
ELA+Q + +++++ L++GG + + L + +I+VATPGR++DHL+N+
Sbjct: 244 ELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRLLDHLQNTPG 303
Query: 267 XXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK 326
R+LE+GF E+ ++++L PK+RQ+MLFSAT T V++L ++SL K
Sbjct: 304 FMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQSMLFSATQTRKVEDLARISLKK 363
Query: 327 -PLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385
PL + D + K +T+ + +L + K K+++F + +
Sbjct: 364 EPLYVGVDDN-KDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKF 422
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
L L +HG Q +R F L+ TDVAARGLDI V ++ +
Sbjct: 423 HYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQF 482
Query: 446 ACPRDLTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSI 503
P D Y+HRVGRTAR GR G+A+ + + L+ + K+A L E S
Sbjct: 483 DPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELGFLRFL-KQAKVPLSE---FEFSW 537
Query: 504 TKWSKIIEQME 514
TK S I Q++
Sbjct: 538 TKISDIQSQLD 548
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 506 (183.2 bits), Expect = 1.7e-47, P = 1.7e-47
Identities = 141/450 (31%), Positives = 211/450 (46%)
Query: 80 IVDNDHSDSEF-DQHEDY--KPEDEDDFSNAGDTKSFFAPADGASFHA-------NSFME 129
++ DHS + D +D+ +PE+ + S A + A DG S+ +
Sbjct: 364 VITVDHSKINYEDFKKDFYVEPEELKNLSPA-EVDELRASLDGIKIRGIDCPKPVTSWSQ 422
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 188
LS + +LGY KPT IQA IP +GRD+ G A TGSGKT AF LP +
Sbjct: 423 CGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKD 482
Query: 189 YRPKRIPAIRV-LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 247
RP + + +I+TPTRELAVQ+ + + +IR C GG K Q L+
Sbjct: 483 QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGA 542
Query: 248 DIVVATPGRMIDHLRNSMSXXXXXX--XXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
+IVV TPGRMID L + R+ +LGF ++ ++ RQT
Sbjct: 543 EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQT 602
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS-L 364
+LFSAT ++ L + L KP+ ++ + S + ++ LL L
Sbjct: 603 VLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGEL 662
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
+ + ++F +++A L + +HG Q R + ++ D L
Sbjct: 663 YNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVL 722
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IAT V ARGLD+ +Q V+NY CP + YVHRVGRT RAG G AVTF+T
Sbjct: 723 IATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVD 782
Query: 485 IAKRAGSKLKSRIVAEQSITKWSKIIEQME 514
IAK K+ + V ++ T S+ +E+++
Sbjct: 783 IAKAL--KMSKQPVPKELQTLASQFLEKVK 810
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 141/489 (28%), Positives = 230/489 (47%)
Query: 34 KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQH 93
K K K+ D E+V++E +++ K K LQQR + D +E ++
Sbjct: 63 KKKKNKKRGDTDDGE-DEAVAEEEPKKKK-----KKNKKLQQRGDTNDEEDEVIAEEEEP 116
Query: 94 EDYKPEDEDDFSNAGDT-----KSFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSK 147
+ K + D + K + S N +F L+LS ++ + +G+++
Sbjct: 117 KKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFAR 176
Query: 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPT 205
T IQA IP + G D+ G+A TGSGKT AF +P +E LLYR K P VL++ PT
Sbjct: 177 MTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE-LLYRVKFTPRNGTGVLVICPT 235
Query: 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265
RELA+Q + + +++ ++ V+GG K + L +++VATPGR++DHL N+
Sbjct: 236 RELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTN 295
Query: 266 SXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT 325
R+LE F ++ +++ L PK RQT LFSAT + V++L ++SLT
Sbjct: 296 GFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLT 355
Query: 326 KPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385
P+ + D K + +L L K+++F T ++
Sbjct: 356 SPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKF 415
Query: 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445
LF E+ G + Q +R F K L+ T+VAARGLD V ++ Y
Sbjct: 416 HAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQY 475
Query: 446 ACPRDLTSYVHRVGRTARA-GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIT 504
P + T Y+HRVGRTAR G +G A+ +T + ++ + K A ++ E+ +
Sbjct: 476 DPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYL-KAAKIPVEEHEFEEKKLL 534
Query: 505 KWSKIIEQM 513
+E +
Sbjct: 535 DVKPFVENL 543
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 489 (177.2 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 117/356 (32%), Positives = 182/356 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+ Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 185 ERLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
++ + + P +I+ PTREL Q+H+ ++ + ++R V GG S Q A
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L+ +IVV TPGR+IDH++ + R+ ++GF ++ +
Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD 431
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTR 490
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIP 550
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 551 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 41 (19.5 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDSSN 85
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 489 (177.2 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 117/356 (32%), Positives = 182/356 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+ Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 185 ERLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
++ + + P +I+ PTREL Q+H+ ++ + ++R V GG S Q A
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L+ +IVV TPGR+IDH++ + R+ ++GF ++ +
Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD 431
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTR 490
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIP 550
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 551 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 41 (19.5 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDSSN 85
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 490 (177.5 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 132/415 (31%), Positives = 209/415 (50%)
Query: 79 PIVDNDHSDSEF--------DQHEDYK---PEDEDDFSNAGDTKSFFA--PADGASFHAN 125
P+ DHS+ E+ D+HE+ P+ + + + + A P G+SF
Sbjct: 199 PLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARF 258
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F E + + +R E Y++PTPIQ +P+A++GRD+ G A TGSGKTAAF P L
Sbjct: 259 GFDEQLMHQ--IRKSE---YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 186 RLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
++ + + P +I+ PTREL Q+HS ++ + ++R V GG S Q AL
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ +IVV TPGR+IDH++ + R+ ++GF ++ + R
Sbjct: 374 QEGAEIVVCTPGRLIDHVKKK-ATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDR 432
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPS-KWNWLTRR 491
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 492 LVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPI 551
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 40 (19.1 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDNSN 85
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 481 (174.4 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 133/424 (31%), Positives = 206/424 (48%)
Query: 79 PIVDNDHSDSEF--------DQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMEL 130
P+ D DHS ++ ++HED K D +T + SF
Sbjct: 211 PLPDIDHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHF 270
Query: 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 190
+ + L+ A Y +PTPIQA IP AL+GRD+ G A TGSGKTAA+ P + ++ +
Sbjct: 271 SFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQ 330
Query: 191 P--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-P 247
P K +I+ PTRELA+QV +K + +I GG S Q L++
Sbjct: 331 PDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGA 390
Query: 248 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 307
++VV TPGR+ID ++ + R+ ++GF A++ + RQ ++
Sbjct: 391 EMVVCTPGRIIDLVKMG-ATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLM 449
Query: 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 367
FSAT + V+ L + +L P+R+ + + + ++ +L
Sbjct: 450 FSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDV-KLHWLIRNLVEF 508
Query: 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427
KV+IF K + + + LHG++ QA+R E L FRK+ L+AT
Sbjct: 509 ASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS-QILVAT 567
Query: 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487
DVAARGLDI ++TVIN+ RD+ ++VHR+GRT RAG +G A T VT+ D ++ + K
Sbjct: 568 DVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVK 627
Query: 488 RAGS 491
S
Sbjct: 628 NLES 631
Score = 44 (20.5 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 47 AAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDD 103
A+ + VS++ + R D + I + D +S F E+YK + E+D
Sbjct: 133 ASSDKKVSEQKEKDRKEGKDTEDPSKKGLGRADIDEEDMQESLFKFMEEYKEKHEND 189
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 467 (169.5 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 111/340 (32%), Positives = 180/340 (52%)
Query: 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR--IPAIRVLIL 202
+ KPTP+Q+ P+AL+G D+ G + TGSGKT +F LP +E +L +P++ P VL++
Sbjct: 159 FEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSVLVV 218
Query: 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTRELA Q++ E+ + +I + GG + Q+ L P IVV TPGR+ID +
Sbjct: 219 APTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFME 278
Query: 263 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
+ RL+E+GF +I + RQ + +SAT + V +
Sbjct: 279 SG-DLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEK 337
Query: 323 SLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL---CSKTFTSKVIIFSGT 379
+ P+RL S + +A++ +L S ++ +IF+ T
Sbjct: 338 HIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMT 397
Query: 380 KQAAHRLK--ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437
K+ A LK I ++ LHG++ Q +R ++ F+ + +D ++ATDVA+RGLDI
Sbjct: 398 KKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIK 457
Query: 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477
G+ VIN++ P D +YVHR+GRT RAG G + + +++N
Sbjct: 458 GISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNN 497
Score = 45 (20.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTK 111
+N+++++ F ++ Y + + F N G+ K
Sbjct: 57 NNNNNNNSFMNNDGYNSKSNNGFDNFGNKK 86
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 136/407 (33%), Positives = 206/407 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L+ L +A PT +Q IP L GRD+ + TGSGKT AF LP L+
Sbjct: 18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76
Query: 186 RLLYR------PKRIPAIR--VLILTPTRELAVQV----HSMIEKIAQFTDIRCCLVVGG 233
L + K +PA + L+L PTRELA+QV H++ +++ + L+ GG
Sbjct: 77 ILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136
Query: 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIH 293
++ + Q L + P +VVATPGR++D L RLLE+GF ++
Sbjct: 137 VALEQQLADLSAKPQLVVATPGRLLD-LCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
Query: 294 ELVRLCPKRRQTMLFSATLTEDVDELI-KLSLTKPLRLSADPSAKRPSTLTXXXXXXXXX 352
+L+ + PKR+QT+LFSATL E +D L KL PL++ A + R + +
Sbjct: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEA---STRNAVVGEIEEQLYLV 252
Query: 353 XXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
++ L++L + +V++F + A + A + AA LHG Q R +
Sbjct: 253 NKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQT 312
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+ + L+ATD+ ARG+ + + VIN P YVHR+GRTARAG +G A++
Sbjct: 313 LADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAIS 372
Query: 473 FVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIT-KWS-KIIEQMEDQV 517
V + L AI L +A+ +T K S KII+ E++V
Sbjct: 373 LVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKV 419
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 136/407 (33%), Positives = 206/407 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F EL L+ L +A PT +Q IP L GRD+ + TGSGKT AF LP L+
Sbjct: 18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76
Query: 186 RLLYR------PKRIPAIR--VLILTPTRELAVQV----HSMIEKIAQFTDIRCCLVVGG 233
L + K +PA + L+L PTRELA+QV H++ +++ + L+ GG
Sbjct: 77 ILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136
Query: 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIH 293
++ + Q L + P +VVATPGR++D L RLLE+GF ++
Sbjct: 137 VALEQQLADLSAKPQLVVATPGRLLD-LCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
Query: 294 ELVRLCPKRRQTMLFSATLTEDVDELI-KLSLTKPLRLSADPSAKRPSTLTXXXXXXXXX 352
+L+ + PKR+QT+LFSATL E +D L KL PL++ A + R + +
Sbjct: 196 KLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEA---STRNAVVGEIEEQLYLV 252
Query: 353 XXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
++ L++L + +V++F + A + A + AA LHG Q R +
Sbjct: 253 NKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQT 312
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+ + L+ATD+ ARG+ + + VIN P YVHR+GRTARAG +G A++
Sbjct: 313 LADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAIS 372
Query: 473 FVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIT-KWS-KIIEQMEDQV 517
V + L AI L +A+ +T K S KII+ E++V
Sbjct: 373 LVCHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKV 419
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 489 (177.2 bits), Expect = 2.9e-47, Sum P(2) = 2.9e-47
Identities = 132/415 (31%), Positives = 209/415 (50%)
Query: 79 PIVDNDHSDSEF--------DQHEDYK---PEDEDDFSNAGDTKSFFA--PADGASFHAN 125
P+ DHS+ E+ D+HE+ P+ + + + + A P G+SF
Sbjct: 201 PLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHF 260
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
F E + + +R E Y++PTPIQ +P+A++GRD+ G A TGSGKTAAF P L
Sbjct: 261 GFDEQLMHQ--IRKSE---YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 315
Query: 186 RLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
++ + + P +I+ PTREL Q+HS ++ + ++R V GG S Q AL
Sbjct: 316 HIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL 375
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ +IVV TPGR+IDH++ + R+ ++GF ++ + R
Sbjct: 376 QEGAEIVVCTPGRLIDHVKKK-ATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDR 434
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 435 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPS-KWNWLTRR 493
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 494 LVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPI 553
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 554 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 608
Score = 40 (19.1 bits), Expect = 2.9e-47, Sum P(2) = 2.9e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDNSN 85
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 501 (181.4 bits), Expect = 3.5e-47, P = 3.5e-47
Identities = 119/356 (33%), Positives = 185/356 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 187 LLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR + + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 131 L-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN 189
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
++ +I+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQ
Sbjct: 190 NI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQ 248
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 249 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKY-STPATLEQNYIICELHQKISVLFSF 307
Query: 365 CSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 422
T K ++ FS K+ + ++ L + LHG Q +R+E F ++
Sbjct: 308 LRSHLTKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAA 367
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L ATD+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSE 423
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 499 (180.7 bits), Expect = 4.0e-47, P = 4.0e-47
Identities = 135/386 (34%), Positives = 197/386 (51%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L +S P L + + T IQ+ I AL GRD+ G+A TGSGKT AF +P LE
Sbjct: 49 SFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILE 108
Query: 186 RLLYRPKRIP--AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
L YR + + LI++PTRELA+Q+ ++ KI ++ LV+GG S K ++ L
Sbjct: 109 NL-YRKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQERL 167
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
M +I+V TPGRM+ HL + R++++GF + ++ P R
Sbjct: 168 GRM-NILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPER 226
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT T+ V +L +LSL P ++ +A +T + + L S
Sbjct: 227 QTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASS-ATPSKLQQHYVVTPLPQKLDTLWS 285
Query: 364 LCSKTFTSKVIIF-SGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK-QH 420
SK I+F S KQ + + + LHG Q RL+ F + QH
Sbjct: 286 FIRSNLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQAQH 345
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-R 479
L +TDVAARGLD V VI CP D +Y+HRVGRTAR R+G AV F+ ++ +
Sbjct: 346 A-VLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEK 404
Query: 480 SLLKAIA-KRAG-SKLKSRIVAEQSI 503
+L+ + KR ++ R +QSI
Sbjct: 405 GMLRRLEQKRVTVERINVRANKQQSI 430
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 501 (181.4 bits), Expect = 4.1e-47, P = 4.1e-47
Identities = 134/438 (30%), Positives = 212/438 (48%)
Query: 78 VPIVDNDHSDSEFDQHE-DYKPEDEDDFSNAGDT-----KSFFAPADGAS--FHANSFME 129
+P+ DHS+ ++ E ++ E E+ S G + GA+ A SF
Sbjct: 202 MPLPPIDHSEIDYSPFEKNFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAH 261
Query: 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 189
L+ Y++PTPIQ +P+AL+GRD G A TGSGKTAAF P L ++
Sbjct: 262 FGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMD 321
Query: 190 RPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMP 247
+ + P +I+ PTREL Q+H+ ++ + +R V GG S Q AL+
Sbjct: 322 QKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGA 381
Query: 248 DIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTML 307
+IVV TPGR+IDH++ + R+ ++GF ++ + RQT+L
Sbjct: 382 EIVVCTPGRLIDHVKKK-ATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLL 440
Query: 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK 367
FSAT + +++L + L P+R+ + +T + L
Sbjct: 441 FSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQD-KWGWLTRRLVEF 499
Query: 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427
T V++F K L LHG++ Q++R + + F+K+++ L+AT
Sbjct: 500 TSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVAT 559
Query: 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487
DVAARGLDI ++TV+NY RD+ ++ HR+GRT RAG +G A T +T D S
Sbjct: 560 DVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSF------ 613
Query: 488 RAGSKLKSRIVAEQSITK 505
AG +++ A QS++K
Sbjct: 614 -AGDLVRNLEGANQSVSK 630
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 134/378 (35%), Positives = 190/378 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L ++ A E G+ TPIQA +PL L GRD+ G A TG+GKT AF T
Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70
Query: 187 LLYRP----KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
LL P +++ R LI+ PTRELAVQ+H+ E +A+ T ++ L GG Q
Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKV 130
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP-- 300
L S DI++ T GR+ID+ + + R+ +LGF +I L R P
Sbjct: 131 LESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
+R MLFSATL+ V EL + + +P K T N+E +
Sbjct: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQK-----TGHRIKEELFYPSNEEKM 244
Query: 361 LL--SLCSKTFTSKVIIFSGTKQAAHRLKILFG-LAA--LKAAELHGNLTQAQRLEALEL 415
L +L + + + IIF+ TK HR + ++G LAA + L G++ Q +RL L+
Sbjct: 245 RLLQTLIEEEWPDRAIIFANTK---HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDE 301
Query: 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475
F + +D L+ATDVAARGL I V V NY P D YVHR+GRT RAG G++++
Sbjct: 302 FTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLAC 361
Query: 476 DNDRSLLKAIAKRAGSKL 493
+ L AI G +
Sbjct: 362 EEYALNLPAIETYIGHSI 379
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 486 (176.1 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 117/356 (32%), Positives = 182/356 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+ Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 185 ERLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
++ + + P +I+ PTREL Q+H+ ++ + ++R V GG S Q A
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKA 372
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L+ +IVV TPGR+IDH++ + R+ ++GF ++ +
Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD 431
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTR 490
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIP 550
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 551 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 41 (19.5 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDSSN 85
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 486 (176.1 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 117/356 (32%), Positives = 182/356 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF L+ Y++PTPIQ +P+AL+GRD+ G A TGSGKTAAF P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 185 ERLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
++ + + P +I+ PTREL Q+H+ ++ + ++R V GG S Q A
Sbjct: 313 IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKA 372
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKR 302
L+ +IVV TPGR+IDH++ + R+ ++GF ++ +
Sbjct: 373 LQEGAEIVVCTPGRLIDHVKKK-ATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD 431
Query: 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
RQT+LFSAT + +++L + L P+R+ + +T +
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPS-KWNWLTR 490
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
L T + V++F K A L LHG++ Q++R + + F+K+ +
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIP 550
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
L+ATDVAARGLDI ++TVINY RD+ ++ HR+GRT RAG +G A T +T D
Sbjct: 551 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 41 (19.5 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 88 SEFDQHEDYKPEDEDDFSN 106
+ FD+ Y ++E+D SN
Sbjct: 67 ANFDEENAYFEDEEEDSSN 85
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 126/372 (33%), Positives = 194/372 (52%)
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
EL +S +++A + G K PIQ A + A+ GRD+ G A TG+GKT AF +P +++++
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 189 -YRPK----RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
Y K R P L+L PTRELA QV + A D C + GG Q L
Sbjct: 168 KYNAKHGRGRNPLC--LVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQL 223
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
D+ V TPGR+ID ++ + ++L++GF+ ++ ++ P++R
Sbjct: 224 DYGVDVAVGTPGRVIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLR--LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
Q+M+FSAT+ + L K L PL L D K +T + L
Sbjct: 283 QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPL 342
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQH 420
++ +K K I+F+ TK+ A RL + LA + K LHG+++Q+QR L FR H
Sbjct: 343 VTEHAKG--GKCIVFTQTKRDADRLS--YALARSFKCEALHGDISQSQRERTLAGFRDGH 398
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480
+ L+ATDVAARGLD+ V +I+Y P + ++VHR GRT RAG++G A+ + +
Sbjct: 399 FNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR 458
Query: 481 LLKAIAKRAGSK 492
+K I + GS+
Sbjct: 459 AVKIIEREVGSR 470
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 497 (180.0 bits), Expect = 5.6e-47, P = 5.6e-47
Identities = 124/392 (31%), Positives = 189/392 (48%)
Query: 90 FDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPT 149
+ QH+D D++ T SF L++A Y++PT
Sbjct: 234 YTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPT 293
Query: 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV--LILTPTRE 207
PIQA +P AL+GRDI G A TGSGKTAAF P L ++ + + P LIL PTRE
Sbjct: 294 PIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRE 353
Query: 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSX 267
L++Q+++ +K + ++ GG S Q AL +I+VATPGRMID ++ +
Sbjct: 354 LSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMIDMVKMK-AT 412
Query: 268 XXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327
R+ +GF ++ + RQ ++FSAT + ++ L + L+ P
Sbjct: 413 NLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDP 472
Query: 328 LRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387
+R+ + +T +L L V+IF K A +
Sbjct: 473 VRIVQGDLNEANQDITQSVYVFPNPLQ-KWNWLLCHLVKFLSEGSVLIFVTKKVDAETVS 531
Query: 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447
+ LHG++ QA R + + F+++ D L+ATDVAARGLDI ++ V+NY
Sbjct: 532 NNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDT 591
Query: 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
RD+ ++ HR+GRT RAG +G A T VTD D+
Sbjct: 592 ARDIETHTHRIGRTGRAGEKGNAYTLVTDKDK 623
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 369 (135.0 bits), Expect = 6.1e-47, Sum P(3) = 6.1e-47
Identities = 80/217 (36%), Positives = 124/217 (57%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F ++L++ LL+A G++ PTPIQ IP+ L G DI G A TGSGKT AF +P +++
Sbjct: 232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK 291
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
L + +R +IL+PTRELA+Q +++ +Q T +R L+VGG S + Q T L
Sbjct: 292 LGDHSTTV-GVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARN 350
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTM 306
PDI++ATPGR++ HL + RL E+GF+ ++ E++ + RQT+
Sbjct: 351 PDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTL 409
Query: 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343
LFSATL + + ++ L P ++ D K L+
Sbjct: 410 LFSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLS 446
Score = 185 (70.2 bits), Expect = 6.1e-47, Sum P(3) = 6.1e-47
Identities = 59/189 (31%), Positives = 88/189 (46%)
Query: 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430
S IIF TK + IL A + + +HG L R L FR V ++ TD+A
Sbjct: 498 SSTIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLA 557
Query: 431 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490
ARG+DI + VIN+ P ++HRVGR ARAGR G A + V+ ++ + + G
Sbjct: 558 ARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLG 617
Query: 491 SKLKSRIVAE-QSIT--KWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMI--A 545
K ++ E Q+I K+S + + I + + RK +E I A
Sbjct: 618 RKFLNKFQYEGQTINDPKYS-FYGTIPQTI--IDRETEFVNVQRKECIELLSLTKTIHNA 674
Query: 546 HKEEIFARP 554
HK+ + RP
Sbjct: 675 HKKYLSTRP 683
Score = 44 (20.5 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 466 REGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
R+G V+ D DR K + + KL + + +W K
Sbjct: 934 RKGKFVSSQADADRKNSKKLVRNEAGKLVEAKKSHKGYEEWKK 976
Score = 43 (20.2 bits), Expect = 6.1e-47, Sum P(3) = 6.1e-47
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 80 IVDNDHSDSEFDQHEDYKPEDEDDFSNAGDT-KSFFAPADGA-SFHANSFMELNLS 133
++DN + D+ DQ E DD A + K+ A AD S +N E+ S
Sbjct: 148 VIDNSNFDNNGDQFNSEDEEFYDDEKQAKKSNKNKNADADNKKSKKSNKKEEIESS 203
Score = 38 (18.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 67 FKITKSLQQRSVPIVDNDH 85
F + +Q++S+P++ + H
Sbjct: 250 FNVPTPIQRKSIPMILDGH 268
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 126/379 (33%), Positives = 196/379 (51%)
Query: 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203
GY PTPIQ IP+ L GRD+ SA TGSGKTAAF LP + R L + K P+ L+LT
Sbjct: 210 GYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQSKA-PS--ALVLT 266
Query: 204 PTRELAVQVHSMIEKI-AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLR 262
PTRELA+Q+ +++ +R L+VGGL Q LR +++ATPGR++D ++
Sbjct: 267 PTRELAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMK 326
Query: 263 NSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322
S S +L++GF ++ +++ P+ QT+L SAT+ +++L
Sbjct: 327 QS-SVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLASR 385
Query: 323 SLTKPLR-LSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQ 381
L P+R L+ + + PS +L K F V++F K
Sbjct: 386 LLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILND--KKLFKPPVLVFVDCKL 443
Query: 382 AAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440
A L + + + LK+ +H +Q +R LE + D +++T V RGLD+I V+
Sbjct: 444 GADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVK 503
Query: 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRI 497
V+N+ P + YVH+VGR R G+ G A+TF+ +N + L IAKR GS L ++
Sbjct: 504 LVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 563
Query: 498 VAEQSITKWSKIIEQMEDQ 516
+ + + K EQ +D+
Sbjct: 564 LNSPYLHE-QKRKEQQKDK 581
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 498 (180.4 bits), Expect = 7.5e-47, P = 7.5e-47
Identities = 123/388 (31%), Positives = 200/388 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 187 LLYRPKRIPA--IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR + A + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 131 L-YRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN 189
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
++ +I+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQ
Sbjct: 190 NI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQ 248
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 249 TLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKY-STPATLEQNYIVCELQQKISVLYSF 307
Query: 365 CSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 422
K ++ FS K+ + ++ L + LHG Q +R+E F ++
Sbjct: 308 LRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRAA 367
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSL 481
L ATD+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++ + +
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGM 427
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKI 509
++ + ++ + +I E+ I K+
Sbjct: 428 VQQLLQKKVPVKEIKINPEKLIDVQKKL 455
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 492 (178.3 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 125/369 (33%), Positives = 184/369 (49%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F EL L++P A + + T IQ CIP AL GRDI G+A TGSGKT AF +P +E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 187 LLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR K + + L+++PTRELA+Q + KI + L++GG + K ++ L
Sbjct: 101 L-YRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLS 159
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
M +I+V TPGR++ H+ +++ R+L++GF + +V P RQ
Sbjct: 160 RM-NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQ 218
Query: 305 TMLFSATLTEDVDELIKLSLTKP--LRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLL 362
TMLFSAT T+ V +L +LSL P + + + ++ PS L + +L
Sbjct: 219 TMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLD---ILF 275
Query: 363 SLCSKTFTSKVIIF-SGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK-Q 419
K I+F S KQ + + + LHG Q R E F +
Sbjct: 276 GFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSR 335
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
HV L TD+ ARGLD V VI P D+ +Y+HRVGRTAR R G A+ + ++
Sbjct: 336 HV-VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEE 394
Query: 480 SLLKAIAKR 488
+ LK + +
Sbjct: 395 AFLKRLESK 403
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 135/382 (35%), Positives = 195/382 (51%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF +L +++ L + +A+ PT IQ+ACIP L G D G A TGSGKT AFA P L
Sbjct: 2 SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLT 61
Query: 186 RLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245
+ P I LILTPTRELA+Q+ + +I+ +VVGG Q AL+
Sbjct: 62 QWSEDPFGIFG---LILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQR 118
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXX---XXRLLELGFSAEIHELVRLCPK- 301
P V+ATPGR+ DH+ NS RLL F +++ + P
Sbjct: 119 KPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTS 178
Query: 302 -RRQTMLFSATLTEDVDELIKLSLTK---PLRLSADPSAKR---PSTLTXXXXXXXXXXX 354
+RQT+LF+AT+T+ V L + T P+ + + + PSTL
Sbjct: 179 DKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYV- 237
Query: 355 XNQEAVLLSLCS-KTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
+EA L S+ + F S +IF A L+ + + A LH + Q++R +
Sbjct: 238 --KEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNS 295
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
L F+ LIATDVA+RGLDI V+ VIN+ P D ++HRVGRTARAGR+G AV+
Sbjct: 296 LHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVS 355
Query: 473 FVTDNDRSLLKAIAKRAGSKLK 494
+ + D +++I +R K++
Sbjct: 356 IIGEKDIDRIQSIEERINKKME 377
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 128/396 (32%), Positives = 200/396 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F L R +A GY PTPIQ IP+ L GRD+ SA TGSGKTAAF LP + R
Sbjct: 206 FEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILR 265
Query: 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRS 245
L + K P+ L+LTPTRELA+Q+ +++ +R L+VGGL Q LR
Sbjct: 266 ALSQSKS-PS--GLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQ 322
Query: 246 MPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQT 305
+++ATPGR++D ++ S +L++GF ++ +++ P QT
Sbjct: 323 RIQVIIATPGRLLDIIKQR-SVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQT 381
Query: 306 MLFSATLTEDVDELIKLSLTKPLRLSA-DPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
+L SAT+ V++L L P+ ++A + + PS +L
Sbjct: 382 VLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILND- 440
Query: 365 CSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
K F V++F K A L + + + LK+ +H + TQ +R L+ + D
Sbjct: 441 -KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDV 499
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
+++T V RGLD++GV+ V+N+ P + YVH++GR R G+ G A+TF+ +N + L
Sbjct: 500 VVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFW 559
Query: 484 AIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQ 516
IAKR GS L +++ + K EQ +D+
Sbjct: 560 DIAKRVKPTGSLLPPQLLNSPYLHD-QKRKEQQKDR 594
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 142/452 (31%), Positives = 229/452 (50%)
Query: 97 KPEDEDDFSNAGDTKSFFAPADGASFHANSFMEL-NL-SRPLLRACEALGYSKPTPIQAA 154
KP++++D S + S GA F SF L NL + L+A + +G++ T IQ
Sbjct: 153 KPDNDEDES---EVPSLPLGLTGA-FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHK 208
Query: 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP--AIRVLILTPTRELAVQV 212
I L GRD+ +A TGSGKT AF +P +E L+ + + +P VLIL+PTRELA+Q
Sbjct: 209 SIRPLLEGRDLLAAAKTGSGKTLAFLIPAVE-LIVKLRFMPRNGTGVLILSPTRELAMQT 267
Query: 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXX 272
+++++ L++GG + + L + +I+VATPGR++DH++N+
Sbjct: 268 FGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNL 327
Query: 273 XXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLS 331
R+L++GF E+ ++++L P RRQTMLFSAT T V++L ++SL K PL +
Sbjct: 328 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVG 387
Query: 332 ADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKVIIF-SGTKQAAHRLKILF 390
D K +T+ + +L + K K+++F S + ++L
Sbjct: 388 VDDD-KANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELL- 445
Query: 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450
L +HG Q +R F L+ TDVAARGLDI V ++ Y P D
Sbjct: 446 NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDD 505
Query: 451 LTSYVHRVGRTARA--GREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508
Y+HRVGRTAR GR G+A+ + + L+ + + S++ + WSK
Sbjct: 506 PKEYIHRVGRTARGLNGR-GHALLILRPEELGFLRYLKQ-------SKVPLSEFDFSWSK 557
Query: 509 IIEQMEDQVAAILQXXXXXXILRKAEMEATKA 540
I + ++ Q+ +++ L K+ EA K+
Sbjct: 558 ISD-IQSQLEKLIEKNY---FLHKSAQEAYKS 585
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 494 (179.0 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 125/369 (33%), Positives = 192/369 (52%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KR 193
L++ G+ PTPIQ+ P+AL GRDI G A TGSGKT AF LP++ + +P +
Sbjct: 395 LMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLRE 454
Query: 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 253
VL+L PTRELA+Q+ K + I V GG S Q AL+ +IV+AT
Sbjct: 455 DDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIAT 514
Query: 254 PGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313
PGR+ID L + + R+L++GF +I +++ RQT++FSAT
Sbjct: 515 PGRLIDILESGKTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIISQIRPDRQTLMFSATWP 573
Query: 314 EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 373
++V L LT +++ S + + +E +L L S KV
Sbjct: 574 KEVQALAHDFLTDHIQVHIG-STEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKV 632
Query: 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433
I+F+ T++ L+ + + K+ +HGN +Q +R L F+ V +IATDVA+RG
Sbjct: 633 IVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRG 692
Query: 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493
LDI ++ V+NY P + Y+HR+GRTARAG G + + +T ++ L + K ++
Sbjct: 693 LDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVL-TEA 751
Query: 494 KSRIVAEQS 502
K +I E S
Sbjct: 752 KQKIPIELS 760
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 496 (179.7 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 122/388 (31%), Positives = 199/388 (51%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + LS+ L+ + Y T IQ I LAL G+D+ G+A TGSGKT AF +P LE
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 187 LLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
L YR + + VLI++PTRELA Q ++ K+ + D L++GG K + +
Sbjct: 131 L-YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN 189
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
++ +I+V TPGR++ H+ ++ R+L++GF+ ++ ++ PK+RQ
Sbjct: 190 NI-NILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQ 248
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT T+ V +L +LSL P + AK ST + +VL S
Sbjct: 249 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKY-STPATLEQNYIICELHQKISVLFSF 307
Query: 365 CSKTFTSK-VIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVD 422
K ++ FS K+ + ++ L + LHG Q +R+E F ++
Sbjct: 308 LRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAA 367
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSL 481
L ATD+AARGLD V V+ + CP D +Y+HR GRTAR +G A+ + ++ + +
Sbjct: 368 VLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGM 427
Query: 482 LKAIAKRAGSKLKSRIVAEQSITKWSKI 509
++ + ++ + +I E+ I K+
Sbjct: 428 VQQLLQKKVPVKEIKINPEKLIDVQKKL 455
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 481 (174.4 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 125/379 (32%), Positives = 186/379 (49%)
Query: 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188
+ L+ +L + L Y KP PIQ +P+ ++GRD G A TGSGKT F LP L +
Sbjct: 533 QTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK 592
Query: 189 YRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM 246
+P + L++ PTREL Q+HS I K ++ IRC V GG Q + L+
Sbjct: 593 DQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRG 652
Query: 247 PDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXX--XXRLLELGFSAEIHELVRLCPKRRQ 304
+IVV TPGRMID L S R+ ++GF +I +++ RQ
Sbjct: 653 TEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQ 712
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
T+LFSAT V+ L + L KP+ + + +T + LL
Sbjct: 713 TVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 772
Query: 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFL 424
S+ K+++F +++ L ++ LHG Q R + F+ + L
Sbjct: 773 WSEK--GKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 830
Query: 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484
IAT VAARGLD+ ++ V+N+ P YVHRVGRT RAGR+G AVTF++++D
Sbjct: 831 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDD------ 884
Query: 485 IAKRAGSKLKSRIVAEQSI 503
AK A +K+ ++EQ +
Sbjct: 885 -AKYAPDLVKALELSEQPV 902
Score = 46 (21.3 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 84 DHSDSEFDQHEDYKPEDEDD 103
+ S++E D E+ KPE++ D
Sbjct: 333 EKSETEMDVDEETKPENDGD 352
Score = 39 (18.8 bits), Expect = 8.4e-46, Sum P(2) = 8.4e-46
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFSNAGDTKS 112
D+D+S+ + D +DE+ TK+
Sbjct: 443 DSDYSEPKNDDDPSLDEDDEEFMKRVKKTKA 473
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 392 (143.0 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 105/319 (32%), Positives = 153/319 (47%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F + L LL+A LG+S+PT IQ IPLAL G+D+ A TGSGKTAA+A+P L+
Sbjct: 9 FEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 187 LLYRPKRIP----AIRVLILTPTRELAVQVHSMIEKIAQFT--DIRCCLVVGGLSTKMQE 240
LL+R P A+R L+L PT+ELA Q SMI+++A + DIR V + Q
Sbjct: 69 LLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSASQR 128
Query: 241 TALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCP 300
L PD+VV TP R+++HL+ L GF E+ L+ P
Sbjct: 129 AVLMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLP 188
Query: 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
+ Q L SAT EDV L +L L P+ L S + P ++ +
Sbjct: 189 RIYQAFLMSATFNEDVQALKELVLHNPVTLKLQES-QLPGPDQLQQFQVVCETEEDKFLL 247
Query: 361 LLSLCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L +L + K ++F T + ++RL++ ++ A L+G L R + F +
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQG 307
Query: 420 HVDFLIATDVAARGLDIIG 438
D +IATD G + G
Sbjct: 308 FYDCVIATDAEVLGPPVKG 326
Score = 112 (44.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 431 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ARG+D V V+N+ P +Y+HR GRTARA G +TFV ++S L I
Sbjct: 346 ARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKI 400
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 480 (174.0 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 131/399 (32%), Positives = 194/399 (48%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++++ +S +L A + Y KPTPIQA IP ++GRD+ G A TGSGKT AF LP
Sbjct: 358 TWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 417
Query: 186 RLL-YRPK-RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+L RP +I+TPTRELA+Q+ +K ++ +R V GG Q L
Sbjct: 418 HILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAEL 477
Query: 244 RSMPDIVVATPGRMIDHL--RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
+ +I+V TPGRMID L N R+ ++GF ++ +V
Sbjct: 478 KRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRP 537
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT++FSAT ++ L + L+KP+ + R + + L
Sbjct: 538 DRQTVMFSATFPRTMEALARRILSKPVEVQV---GGRSVVCSDVEQHVIVIEEEKKFLKL 594
Query: 362 LSLCSKTFTSK--VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L + + K VIIF ++ A L A+ LHG + Q R + F+
Sbjct: 595 LEILGH-YQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNG 653
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
L+AT VAARGLD+ + V+NY+CP YVHR GRT RAG +GYA TF+T+
Sbjct: 654 ACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQA 713
Query: 480 ----SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQME 514
+LKA+ + +GS + + + EQ W+ EQ +
Sbjct: 714 RYSGDILKAL-ELSGSSVPAEL--EQL---WTNFKEQQK 746
Score = 44 (20.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 59 RRRTTSVDFKITKSLQQ-RSVPIVDNDHSDSEF----DQHEDYKPEDED 102
RRR+ S + + +KS + RS +N ++ ++ E+ KPED+D
Sbjct: 70 RRRSRSRERRRSKSRSRGRSKEKPENGDQTADKKKIKEEKEEEKPEDQD 118
Score = 44 (20.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 13/68 (19%), Positives = 34/68 (50%)
Query: 37 KRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSD-SEFDQHED 95
++ ++ P D + ++ +E R+R V+ K + +++++ + + E Q +
Sbjct: 108 EKEEEKPED-QDFDQNTLEEEMRKRKERVE-KWREEQRKKAMENIGEIKKELEEMKQGKK 165
Query: 96 YKPEDEDD 103
+ ED+DD
Sbjct: 166 WSLEDDDD 173
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 128/384 (33%), Positives = 193/384 (50%)
Query: 126 SFMELNLSRPLLRACEAL-GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
SF+E+ + LL + G PT IQ IP+AL+GRD+ G A TGSGKT F LP +
Sbjct: 190 SFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249
Query: 185 ERLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKI------AQFTDIRCCLVVGG 233
L + ++P +R LI+ P+RELA Q+ +I ++ A ++R L +GG
Sbjct: 250 MFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGG 309
Query: 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIH 293
+ Q +R IVVATPGR+ D L + R+L++GF EI
Sbjct: 310 VPIGEQAKDVRDGIHIVVATPGRLSDMLTKKI-INLEVCRYLVLDEADRMLDMGFEDEIK 368
Query: 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXX 353
+ +RQT+LFSAT+ + K +L KP+ ++ R +
Sbjct: 369 SIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVG----RAGAASLNVLQELEFV 424
Query: 354 XXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
+ V + C + + KV+IF+ K + + ++ A +HG Q+ R +
Sbjct: 425 RSENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGI 484
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
E FRK D L+ATDVA++GLD G++ VIN+ P D+ +YVHR+GRT R+GR+G A TF
Sbjct: 485 EAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTF 544
Query: 474 VTDNDR----SLLKAIAKRAGSKL 493
+ S LK + AG +L
Sbjct: 545 INKKSEMSVLSDLKQLLAEAGQEL 568
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 138/433 (31%), Positives = 204/433 (47%)
Query: 74 QQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFS-NAGDTKSFFAPADGASFHANSFMELNL 132
++R V +ND S+ E + +D + +A + D N+F E++L
Sbjct: 111 REREVNPFENDDSEPE----PAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDL 166
Query: 133 SRPL---LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL- 188
L +R C+ Y KPTP+Q IP+ L GRD+ A TGSGKTAAF P + ++
Sbjct: 167 GEALNLNIRRCK---YVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMK 223
Query: 189 ----YRPKRIPAIRVL--ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242
RP+ + L IL+PTRELA Q+H +K + T ++ + GG Q
Sbjct: 224 DQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRE 283
Query: 243 LRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC--P 300
L DI+VATPGR+ D L + R+L++GF +I ++V P
Sbjct: 284 LERGVDILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMP 342
Query: 301 KR--RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQE 358
R RQT+LFSAT ++ L L + L+ + +
Sbjct: 343 PRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHL 402
Query: 359 AVLLSLCSKT-FTSK---VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALE 414
LL + K ++F TK+ A L+ + A +HG+ TQ +R AL+
Sbjct: 403 MDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALK 462
Query: 415 LFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474
F+ L+ATDVAARGLDI V V+N+ P D+ YVHR+GRT RAG+ G A F
Sbjct: 463 AFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 522
Query: 475 TDNDRSLLKAIAK 487
D + SL + +A+
Sbjct: 523 NDGNTSLARPLAE 535
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 122/355 (34%), Positives = 181/355 (50%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F +LNL+ ++ EA+G+ T IQA +P+ L G D+ G A TG GKT AF T
Sbjct: 11 FADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHH 70
Query: 187 LLYRPKRIPAI---RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
LL K P R LI+ PTRELA+Q+H ++A+ T +R +V GG + Q L
Sbjct: 71 LLQ--KEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLEL 128
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK-- 301
+ DI++ T GR+ID+++ + R+ +LGF +I + P
Sbjct: 129 EAGVDILIGTCGRLIDYMKQGI-YNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPAT 187
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
R +MLFSATL+ V EL + P + +P K S ++ ++ +L
Sbjct: 188 ERLSMLFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFYPSNE---DKMTLL 244
Query: 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421
+L + + K I+F+ TK ++ ++ L G++ Q +RL+ LE F V
Sbjct: 245 QTLIEEDWPEKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTV 304
Query: 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476
D L+ATDVAARGL I V V NY P D YVHR+GRT RAG G+A++ +
Sbjct: 305 DILVATDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACE 359
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 490 (177.5 bits), Expect = 5.5e-46, P = 5.5e-46
Identities = 125/393 (31%), Positives = 196/393 (49%)
Query: 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPT 183
A F + LS+ L+ Y +PT IQ I AL GRD+ G+A TGSGKT AF +P
Sbjct: 69 AVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPV 128
Query: 184 LERLLYRPK--RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241
LE LYR + + + LI++PTRELA Q ++ K+ + + LV+GG K +
Sbjct: 129 LE-CLYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESE 187
Query: 242 ALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
+ +I++ TPGR++ H+ + + R+L++GF+ ++ +V PK
Sbjct: 188 KIHRT-NIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPK 246
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTXXXXXXXXXXXXNQEA 359
RQT+LFSAT T V +L +LSL P + AK P+TL N
Sbjct: 247 SRQTLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVN--- 303
Query: 360 VLLSLCSKTFTSKVIIFSGT-KQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFR 417
+L S K+I+F K+ + +I L + LHG Q +R+E F
Sbjct: 304 MLYSFLRSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFV 363
Query: 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAV-TFVTD 476
++ L ATD+AARGLD V V+ + CP D +Y+HRVGRTAR G A+ +
Sbjct: 364 RKTSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPS 423
Query: 477 NDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKI 509
++ ++ + ++ K ++ E+ ++ K+
Sbjct: 424 EEKGMISQLQEKKVPINKIQVNPEKLMSVQQKL 456
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 125/415 (30%), Positives = 206/415 (49%)
Query: 79 PIVDNDHSDSEFDQHEDYKPEDEDDFSN-AGDTKSFFAPADGASFHAN-SFMELNLSRPL 136
P ++ S + + Q + D D + +S SF ++ L+ +
Sbjct: 107 PAANDSSSSTNYTQSSKLSSVSQSDIDKFLSDNEITVEDPSSSSLRPILSFDQVQLTSAI 166
Query: 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 196
+ KPTPIQ+ P L+G+D+ G A TGSGKT AF +P + ++
Sbjct: 167 TSKLSK--FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNII-TTGNTKT 223
Query: 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR 256
+ VL ++PTRELA+Q++ + ++ + + C V GG+S Q +++ ++VVATPGR
Sbjct: 224 LSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGR 282
Query: 257 MIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELV-RLCPKRRQTMLFSATLTED 315
++D L N + R+LE GF +I ++ RQT++F+AT ++
Sbjct: 283 LVD-LINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKE 341
Query: 316 VDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSK-----TFT 370
V EL + P++++ + S ++E L+ L K +
Sbjct: 342 VRELANNFMNSPVKVTVGDRDEL-SANKRITQVVEVINKFDKEKKLIQLLRKYNANESSD 400
Query: 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430
+K++IF+ K+ A R++ A +HG+L+Q QR AL F+ + L+ATDVA
Sbjct: 401 NKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVA 460
Query: 431 ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485
ARGLDI V+ VIN P + YVHR+GRT RAG +G A T T++++ L A+
Sbjct: 461 ARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGAL 515
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 128/372 (34%), Positives = 181/372 (48%)
Query: 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR- 190
L L+ + ++KPTP+Q IP+ GRD+ A TGSGKT F P L
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220
Query: 191 PKRIPAIR-----------VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG--LSTK 237
P +P L+L PTRELA Q+ K + +R C+V GG + +
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 297
M+E R D++VATPGR+ D L R+L++GF +I +V
Sbjct: 281 MREVD-RGC-DLLVATPGRLNDLLERG-KVSLANIKYLVLDEADRMLDMGFEPQIRHIVE 337
Query: 298 LC--P--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXX 353
C P + RQT++FSAT D+ L + L + LS + ST
Sbjct: 338 ECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSV---GRVGSTSENITQRILYVD 394
Query: 354 XXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
++++ LL L S +IF TK+ A +L + KA +HG+ TQA+R AL
Sbjct: 395 DMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERAL 454
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
F+ D L+AT VAARGLDI V VINY P D+ YVHR+GRT RAG G A +F
Sbjct: 455 SAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSF 514
Query: 474 VTDNDRSLLKAI 485
N+++++K +
Sbjct: 515 FNSNNQNIVKGL 526
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 127/379 (33%), Positives = 188/379 (49%)
Query: 125 NSFMELNLSRPL---LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFAL 181
N+F +++L L +R C+ Y +PTP+Q IP+ L RD+ A TGSGKTAAF
Sbjct: 151 NTFADIDLGDALNLNIRRCK---YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCF 207
Query: 182 PTLERLLY-----RPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL 234
P + ++ RP+ A+ +IL+PTRELA Q+H +K + T ++ + GG
Sbjct: 208 PIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGT 267
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHE 294
Q L DI+VATPGR+ D L + R+L++GF +I +
Sbjct: 268 PIHQQLRELERGCDILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRK 326
Query: 295 LVRLC--PKR--RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXX 350
+V P R RQTMLFSAT + L ++ + L+ +T
Sbjct: 327 IVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQ 386
Query: 351 XXXXXNQEAVLLSLCSKTFT--SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408
+ LL +T S ++F TK+ A L+ + A +HG+ TQ +
Sbjct: 387 ESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQE 446
Query: 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468
R AL F+ L+ATDVAARGLDI V V+N+ P D+ YVHR+GRT RAG+ G
Sbjct: 447 REVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 506
Query: 469 YAVTFVTDNDRSLLKAIAK 487
A F +N+ L +++A+
Sbjct: 507 IATAFFNENNAQLARSLAE 525
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 124/378 (32%), Positives = 181/378 (47%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
N+F E++L L + Y KPTP+Q IP+ GRD+ A TGSGKTAAF P +
Sbjct: 146 NTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
Query: 185 ERLLY-----RPKRIPAIRVL--ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237
++ RP+ + + L IL+PTRELA Q+H K + T ++ + GG
Sbjct: 206 SGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVN 265
Query: 238 MQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVR 297
Q L DI+VATPGR+ D L R+L++GF +I ++V+
Sbjct: 266 QQIRELERGVDILVATPGRLNDLLERGR-VSLQMVRFLALDEADRMLDMGFEPQIRKIVQ 324
Query: 298 LC----PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXX 353
P RQTMLFSAT ++ L L+ + L+ +
Sbjct: 325 QMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSD 384
Query: 354 XXNQEAVLLSLCSKTFT----SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
+ LL + + ++F TK+ A L+ + A +HG+ +Q +R
Sbjct: 385 KRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQER 444
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
AL F+ L+ATDVAARGLDI V V+N+ P D+ YVHR+GRT RAG G
Sbjct: 445 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGL 504
Query: 470 AVTFVTDNDRSLLKAIAK 487
A F DN+ ++ K +A+
Sbjct: 505 ATAFFNDNNTTMAKPLAE 522
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 125/384 (32%), Positives = 185/384 (48%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+FM++ PLLR + G PTPIQ +P+ L+GRD+ G A TGSGKT F LP +
Sbjct: 98 NFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
Query: 186 RLLYRPKRIPAIR-----VLILTPTRELAVQVHSMIEK-IAQFTD-----IRCCLVVGGL 234
L +P L++ P+RELA Q + ++E+ +A + +R L +GG+
Sbjct: 158 LALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGV 217
Query: 235 STKMQETALRSMPDIVVATPGRMIDHL-RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIH 293
+ Q ++ IVVATPGR+ D L + MS RL++LGF +I
Sbjct: 218 DMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEAD--RLVDLGFEDDIR 275
Query: 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXX 353
+ +RQT+LFSAT+ + +L KP+ ++ R
Sbjct: 276 HVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVG----RAGAANLDVIQEVEYV 331
Query: 354 XXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEAL 413
+ V L C + T V+IF K + L ++A +HG Q R A+
Sbjct: 332 KQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAI 391
Query: 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473
LF+ D L+ATDVA++GLD +Q VINY P ++ +YVHR+GRT R G+ G A TF
Sbjct: 392 SLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTF 451
Query: 474 VTDNDRSLLKAIAKRAGSKLKSRI 497
+ N + K + K RI
Sbjct: 452 INKNQSEITLLDLKHLLQEAKQRI 475
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 439 (159.6 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
Identities = 113/363 (31%), Positives = 182/363 (50%)
Query: 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 195
LL +GY +P+PIQ IP+ L R++ A TGSGKTA+F++P L+ L Y PK+
Sbjct: 210 LLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASFSIPILQAL-YEPKK-E 267
Query: 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPG 255
R +I+ PTRELA Q++ +++ R C++ L + L DI++ TP
Sbjct: 268 GFRSVIIAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTPL 327
Query: 256 RMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLC--PKRRQTMLFSATLT 313
R++ ++ ++ +L + F ++ +V C PK + LFSAT+
Sbjct: 328 RLVYLIKENL-LSLNKVEYLVFDEADKLFDKNFQEQVDIVVTACQNPKLK-ICLFSATMN 385
Query: 314 EDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSLCSKTFTSKV 373
+ V+EL + P+++ + + +T + + L K +
Sbjct: 386 QQVEELGHSIMKNPIKIII--GEQNAAAITVDQKLIYVGKEEGKLLAVRQLIQKGLEPPI 443
Query: 374 IIFSGTKQAAHRL--KILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431
+IF+ +K+ AH L +++F + +H TQ QR ++ FR + LI T++ A
Sbjct: 444 LIFTQSKERAHDLFQELIFD--GINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMA 501
Query: 432 RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA---KR 488
RG+D GV VIN+ P L SY+HR+GRT RAGR G A T TD D +L I K+
Sbjct: 502 RGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPMLPTIVHAMKQ 561
Query: 489 AGS 491
+GS
Sbjct: 562 SGS 564
Score = 64 (27.6 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 57 HFRRRTTSVDFKITK--SLQQRSVPIVDNDHSDSEFDQHEDYKPEDEDDFSNAGD 109
HF + TT I+K +++Q+ DND+ + E + +D+ +D++D + D
Sbjct: 46 HFFKNTTPSTPVISKKDNIKQKKEEEEDNDNDNEESKEDDDFVEDDDNDDDDDDD 100
Score = 44 (20.5 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDF 104
DND D + D+ E+ + E +F
Sbjct: 92 DNDDDDDDDDEDEENEEPKEKEF 114
Score = 42 (19.8 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 81 VDNDHSDSE---FDQ-HEDYKPEDEDDFSNAGDTKS 112
V+ND + + F++ +E+ +D DD ++G K+
Sbjct: 119 VNNDEEEEDITLFNKSNENENSDDSDDSDDSGKNKN 154
Score = 37 (18.1 bits), Expect = 7.2e-43, Sum P(2) = 7.2e-43
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 82 DNDHSDSEFDQHEDYKPEDEDDFS 105
+ + + EF +H+ E+E+D +
Sbjct: 106 NEEPKEKEFIKHQVNNDEEEEDIT 129
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 125/370 (33%), Positives = 181/370 (48%)
Query: 126 SFMELNLSRPL-LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+F LN+ P L LGY TP+QAA +P L G+D+ A TGSGKTAAF L L
Sbjct: 3 AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETAL 243
+++ + + L+L PTRELA QV + ++A+F + + + GG MQ +L
Sbjct: 63 QQI---DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSL 119
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ P I+VATPGR++DHL+ + R+L++GFS I +++R P R
Sbjct: 120 QHAPHIIVATPGRLLDHLQKG-TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASR 178
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLS 363
QT+LFSAT E + + PL + D + P + +L
Sbjct: 179 QTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI----EQQFYETSSKGKIPLLQR 234
Query: 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
L S S ++F TK+ + A LHG+L Q R + L F
Sbjct: 235 LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARV 294
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
L+ATDVAARGLDI ++ V+N+ D +VHR+GRTARAG G A++F +
Sbjct: 295 LVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRAN 354
Query: 484 AIAKRAGSKL 493
I+ KL
Sbjct: 355 IISDMLQIKL 364
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/382 (33%), Positives = 194/382 (50%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF ++ +L + G+++PTPIQ+ P+A+ GRD+ G A TGSGKT ++ LP +
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 186 RLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+ +P VL+L PTRELAVQ+ K + I+ + GG+ Q L
Sbjct: 160 HVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDL 219
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+ +IV+ATPGR+ID + S + R+L++GF +I ++V R
Sbjct: 220 QKGVEIVIATPGRLID-MMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDR 278
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRL---SADPSAKRPSTLTXXXXXXXXXXXXNQEAV 360
QT+ +SAT ++V++L K L P ++ S+D A R + N+
Sbjct: 279 QTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANR--AIRQIVDVISESQKYNKLVK 336
Query: 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420
LL S++++F TK+ ++ + A +HG+ +QA+R L FR
Sbjct: 337 LLEDIMDG--SRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGK 394
Query: 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT-DNDR 479
+ ATDVAARGLD+ V+ VINY P L YVHR+GRT RAG +G A TF T N R
Sbjct: 395 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANAR 454
Query: 480 SL--LKAIAKRAGSKLKSRIVA 499
L I + AG K+ + +
Sbjct: 455 FAKELTNILQEAGQKVSPELAS 476
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 124/392 (31%), Positives = 193/392 (49%)
Query: 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTA 177
+G SF E+ + +L+ + G PTPIQ IP L+GRD+ G A TGSGKT
Sbjct: 30 EGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTL 89
Query: 178 AFALPTLERLLYRPKRIPAIRV-----LILTPTRELAVQVH-SMIEKIAQFTD------I 225
F LP + L + KR+P + LI+ P+ +A H +IE + + +
Sbjct: 90 VFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQM 149
Query: 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLE 285
RC L +GG+S K Q M + +ATPGR++D L M R+++
Sbjct: 150 RCALCIGGMSVKEQ------MEVVKLATPGRLMDLLNKKM-VSLDICRYLALDEADRMID 202
Query: 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXX 345
+GF +I + +RQT+LFSAT+ + + K +L KP+ ++ R +
Sbjct: 203 MGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVG----RAGAASLD 258
Query: 346 XXXXXXXXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405
+ V L C + V+IF+ K + L ++A +HG
Sbjct: 259 VIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKD 318
Query: 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465
Q +R +A+E F++ D L+ATDVA++GLD +Q V+NY P ++ +YVHR+GRT R+G
Sbjct: 319 QEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSG 378
Query: 466 REGYAVTFVTDN-DRSLL---KAIAKRAGSKL 493
+ G A TF+ D S+L KA+ A K+
Sbjct: 379 KTGIATTFINKGCDESVLMDLKALLVEAKQKV 410
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 121/371 (32%), Positives = 185/371 (49%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
SF E+ + +L A G PTPIQ +P L GRD+ G A TGSGKT F LP +
Sbjct: 178 SFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 237
Query: 186 RLLYRPKRIPAIRV-----LILTPTRELAVQVHSMIEKIAQ------FTDIRCCLVVGGL 234
L + +P R LI+ P+RELA Q H +I+ ++ +IR CL +GGL
Sbjct: 238 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL 297
Query: 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHE 294
+ IVVATPGR++D L + R++++GF ++
Sbjct: 298 PVSEALDVISRGVHIVVATPGRLMDMLDKKI-LTLDMCRYLCMDEADRMIDMGFEEDVRT 356
Query: 295 LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXX 354
+ +RQT+LFSAT+ + + + +L KP+ ++ + +T
Sbjct: 357 IFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYV----- 411
Query: 355 XNQEAVLLSL--CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEA 412
QEA ++ L C + V+IF+ KQ + L ++A +HG Q +R A
Sbjct: 412 -KQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRA 470
Query: 413 LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT 472
++ +R D L+ATDVA++GLD VQ VINY P D+ +YVHR+GRT R+ +G A T
Sbjct: 471 VDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATT 530
Query: 473 FVTDN-DRSLL 482
+ ++S+L
Sbjct: 531 LINKTTEQSVL 541
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 118/362 (32%), Positives = 185/362 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF E+NL LLR A G+ +P+ IQ I + G D+ A +G+GKTA F++ L
Sbjct: 23 DSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVL 82
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
+++ K+ A LIL PTRELA Q+ ++ I F +I C +GG S + AL+
Sbjct: 83 QKIDTNVKQCQA---LILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQ 139
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
P +VV TPGR+ D ++ +L GF+ +I+++ +L P+ Q
Sbjct: 140 DGPQVVVGTPGRVHDMIQRRF-LKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQ 198
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
+L SAT+ +DV E+ + P+R+ K TL + LS
Sbjct: 199 VVLLSATMPQDVLEVTTKFMRDPVRILVK---KDELTLEGIKQFYIAVEKEEWKLDTLSD 255
Query: 365 CSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+T T ++ +IF T++ L + +HG++ QAQR ++ FR
Sbjct: 256 LYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRV 315
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATD+ ARG+D+ V VINY P + +Y+HR+GR R GR+G A+ FVT +D +++
Sbjct: 316 LIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMR 375
Query: 484 AI 485
I
Sbjct: 376 EI 377
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 123/379 (32%), Positives = 189/379 (49%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
+F E +L +A G+ KPT IQ P+AL+GRD+ G A TGSGKT ++ LP +
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 186 RLLYRPKRIPAIR--VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
+ +P P VL+L PTRELAVQ+ + K + IR V GG+ Q L
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDL 233
Query: 244 RSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRR 303
+IV+ATPGR+ID L + R+L++GF +I ++V R
Sbjct: 234 SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDR 292
Query: 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS-TLTXXXXXXXXXXXXNQEAVLL 362
QT+++SAT ++V +L L P+++ S +T ++ L
Sbjct: 293 QTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL 352
Query: 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD 422
S+ K +IF+ TK+ + A +HG+ Q +R L+ FR
Sbjct: 353 ETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSP 412
Query: 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL- 481
++ATDVAARG+D+ G+ VINY P ++ YVHR+GRT RAG G A++F T+ ++ L
Sbjct: 413 IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLG 472
Query: 482 --LKAIAKRAGSKLKSRIV 498
L +I + A + ++
Sbjct: 473 AKLISIMREANQNIPPELL 491
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 473 (171.6 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 125/395 (31%), Positives = 187/395 (47%)
Query: 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLE 185
++++ +S +L A + GY KPTPIQ+ IP + GRD+ G A TGSGKT AF LP
Sbjct: 372 TWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFR 431
Query: 186 RLLYRP--KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243
++ + + +I+TPTRELA+Q+ +K ++ +R V GG Q L
Sbjct: 432 HIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAEL 491
Query: 244 RSMPDIVVATPGRMIDHL--RNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPK 301
+ +I+V TPGRMID L N R+ ++GF ++ +V
Sbjct: 492 KRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRP 551
Query: 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVL 361
RQT++FSAT ++ L + L+KP+ + R + N+ L
Sbjct: 552 DRQTVMFSATFPRAMEALARRILSKPIEVQV---GGRSVVCSDVEQHVIVIEEENKFLKL 608
Query: 362 LSLCSKTFTSK--VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419
L L + K VIIF ++ A L A+ LHG + Q R + F+
Sbjct: 609 LELLGH-YQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNG 667
Query: 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479
L+AT VAARGLD+ + V+NY+CP YVHR GRT RAG +G+A TF+T++
Sbjct: 668 TCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQA 727
Query: 480 SLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQME 514
I K +L + W+ EQ +
Sbjct: 728 RYAGDIIKAL--ELSGNPIPADLEKLWADFKEQQK 760
Score = 40 (19.1 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 16/73 (21%), Positives = 34/73 (46%)
Query: 34 KPSKRAKQSPWDFAA--YSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSD-SEF 90
K K K+ D A + ++ +E R+R V+ K + +++++ + + E
Sbjct: 133 KKEKDDKEEEKDKDAKNFDQNKLEEEMRKRKERVE-KWREEQRKKAMENIGELKKEIEEM 191
Query: 91 DQHEDYKPEDEDD 103
Q + + ED+DD
Sbjct: 192 KQGKKWSLEDDDD 204
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 132/398 (33%), Positives = 193/398 (48%)
Query: 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186
F E ++ GYSKPTP+Q IP L RD+ A TGSGKTAAF LP ++
Sbjct: 141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 200
Query: 187 LLYR-PKRI--PAIR---------VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL 234
+L P + PA L+L+PTRELA+Q+H K + ++I+ ++ GG
Sbjct: 201 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 260
Query: 235 ST-KMQETALRSMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIH 293
+ Q LR+ I++ATPGR+ID + R+L++GF +I
Sbjct: 261 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGF-IGLAGCRYLVLDEADRMLDMGFEPQIR 319
Query: 294 ELVR--LCPKR-RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXX 350
++V + PK R T +FSAT +++ L K L A + ST
Sbjct: 320 KIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLA--VGRVGSTSENIEQRLL 377
Query: 351 XXXXXNQEAVLLSLCSKTFTSK-VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQR 409
+ + L+ + + V++F TK+ A+ L +++ +HG+L Q +R
Sbjct: 378 WVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIER 437
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
LELFR L+AT VAARGLDI V+ VINY P D YVHR+GRT R G G
Sbjct: 438 ERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGI 497
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKLKSRIV-AEQSITKW 506
A +F D +R + G LK+ IV + Q + +W
Sbjct: 498 ATSFFNDKNRGI--------GRDLKNLIVESNQEVPEW 527
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 453 (164.5 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 119/386 (30%), Positives = 199/386 (51%)
Query: 128 MELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 187
+ + L +L+ + LG++ TP+Q+ACIPL ++ +D+ A+TGSGKT AF +P LE L
Sbjct: 12 LPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEIL 71
Query: 188 LYRPKRIPAIRV--LILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALR 244
L R +++ ++V LI+TPTRELA+Q+ ++ + Q F L++GG + L+
Sbjct: 72 LKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLK 131
Query: 245 SM-PDIVVATPGRMIDHLRNS-----MSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRL 298
+ +I++ATPGR+ D R ++ RLL++GF A ++ ++
Sbjct: 132 TQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGY 191
Query: 299 CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS-------ADPSAKRPSTLTXXXXXXXX 351
PK+R+T LFSAT T+++++L++ L P+R++ A K P+ L+
Sbjct: 192 LPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRA 251
Query: 352 XXXXNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRL-KILFGLAALKAAE-LHGNLTQAQR 409
N L++ + K ++F T K L L + +HG + +R
Sbjct: 252 EEKFN---TLVAFLRQHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHCIHGKMKH-KR 307
Query: 410 LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY 469
+ FR L+ TDV ARG+DI V V+ Y P +S+VHR GRTAR G +G
Sbjct: 308 NKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGN 367
Query: 470 AVTFVTDNDRSLLKAIAKRAGSKLKS 495
A+ F+ + S + ++ L+S
Sbjct: 368 ALVFLLPMEESYVNFLSINQKCPLQS 393
Score = 37 (18.1 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 544 IAHKEEIFARPKRTWFVTEKEKKLAVK 570
I K++ + ++ W +KEK++ ++
Sbjct: 484 IRFKDKNREKQRQKWLAEQKEKEVPLR 510
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 116/362 (32%), Positives = 186/362 (51%)
Query: 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 184
+SF + L LLR A G+ +P+ IQ I + G D+ A +G+GKTA F++ L
Sbjct: 25 DSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISAL 84
Query: 185 ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR 244
++L + A + LI+ PTRELA Q+ ++ I F +I+C +GG + + ALR
Sbjct: 85 QKL---DPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALR 141
Query: 245 SMPDIVVATPGRMIDHLRNSMSXXXXXXXXXXXXXXXRLLELGFSAEIHELVRLCPKRRQ 304
P IVV TPGR+ D ++ + +L GF+ +I+++ +L P+ Q
Sbjct: 142 EGPQIVVGTPGRIHDMIQRRV-LKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQ 200
Query: 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTXXXXXXXXXXXXNQEAVLLSL 364
+L SAT+ +DV E+ + P+R+ K+ TL + LS
Sbjct: 201 VVLLSATMPQDVLEVTTKFMRDPVRILVK---KQELTLEGIKQFYIAVEKEEWKLDTLSD 257
Query: 365 CSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423
+T T ++ +IF T++ L + +HG++ QAQR ++ FR
Sbjct: 258 LYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRV 317
Query: 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLK 483
LIATD+ ARG+D+ V VINY P + +Y+HR+GR R GR+G A+ FVT +D +++
Sbjct: 318 LIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMR 377
Query: 484 AI 485
I
Sbjct: 378 EI 379
WARNING: HSPs involving 659 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 586 532 0.00092 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 909
No. of states in DFA: 611 (65 KB)
Total size of DFA: 274 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.17u 0.10s 40.27t Elapsed: 00:00:02
Total cpu time: 40.23u 0.10s 40.33t Elapsed: 00:00:02
Start: Sat May 11 02:11:23 2013 End: Sat May 11 02:11:25 2013
WARNINGS ISSUED: 2