Query 007879
Match_columns 586
No_of_seqs 483 out of 3690
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 16:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338 ATP-dependent RNA heli 100.0 2.9E-96 6E-101 708.0 38.9 462 110-571 163-630 (691)
2 KOG0330 ATP-dependent RNA heli 100.0 1E-76 2.3E-81 556.0 32.5 380 123-508 59-438 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 1.6E-69 3.6E-74 542.5 35.8 360 126-489 92-460 (519)
4 KOG0340 ATP-dependent RNA heli 100.0 1.2E-67 2.6E-72 489.2 33.0 378 123-506 5-390 (442)
5 COG0513 SrmB Superfamily II DN 100.0 5.2E-67 1.1E-71 549.3 42.3 366 125-494 29-398 (513)
6 KOG0328 Predicted ATP-dependen 100.0 5.2E-67 1.1E-71 470.2 30.1 371 122-498 24-394 (400)
7 KOG0342 ATP-dependent RNA heli 100.0 7.1E-66 1.5E-70 497.6 37.2 378 123-506 80-463 (543)
8 KOG0345 ATP-dependent RNA heli 100.0 9.3E-65 2E-69 486.3 36.9 362 125-489 4-376 (567)
9 KOG0333 U5 snRNP-like RNA heli 100.0 4.8E-65 1E-69 493.8 33.7 366 119-488 239-635 (673)
10 KOG0343 RNA Helicase [RNA proc 100.0 2.3E-64 4.9E-69 491.4 36.0 384 124-512 68-457 (758)
11 PRK04837 ATP-dependent RNA hel 100.0 7.3E-63 1.6E-67 513.2 42.6 370 123-496 6-381 (423)
12 KOG0346 RNA helicase [RNA proc 100.0 2.3E-63 4.9E-68 472.5 35.0 421 125-548 19-486 (569)
13 KOG0326 ATP-dependent RNA heli 100.0 8.1E-65 1.8E-69 463.5 21.2 367 121-495 81-447 (459)
14 PRK11634 ATP-dependent RNA hel 100.0 2.1E-61 4.6E-66 515.7 48.8 370 124-500 5-375 (629)
15 PTZ00110 helicase; Provisional 100.0 9.7E-62 2.1E-66 514.6 44.3 367 119-489 124-496 (545)
16 PRK10590 ATP-dependent RNA hel 100.0 9.7E-62 2.1E-66 507.7 42.9 368 126-497 2-372 (456)
17 KOG0347 RNA helicase [RNA proc 100.0 2.2E-63 4.8E-68 484.5 27.2 370 121-494 177-587 (731)
18 PRK04537 ATP-dependent RNA hel 100.0 1.3E-61 2.8E-66 515.1 42.5 372 124-498 8-385 (572)
19 PRK11776 ATP-dependent RNA hel 100.0 3.2E-61 6.9E-66 506.4 43.5 364 124-495 3-367 (460)
20 KOG0348 ATP-dependent RNA heli 100.0 4.9E-62 1.1E-66 473.6 29.8 373 116-488 127-565 (708)
21 PRK11192 ATP-dependent RNA hel 100.0 5.6E-60 1.2E-64 494.1 44.3 370 126-498 2-373 (434)
22 PLN00206 DEAD-box ATP-dependen 100.0 4E-60 8.7E-65 501.1 42.6 364 121-489 117-487 (518)
23 KOG0336 ATP-dependent RNA heli 100.0 1.8E-60 3.9E-65 448.3 28.7 363 120-487 214-582 (629)
24 KOG0335 ATP-dependent RNA heli 100.0 2.4E-60 5.1E-65 468.0 29.3 363 121-487 70-454 (482)
25 PRK01297 ATP-dependent RNA hel 100.0 2.7E-58 5.9E-63 485.2 45.0 369 124-496 86-461 (475)
26 KOG0341 DEAD-box protein abstr 100.0 7.2E-61 1.6E-65 448.1 17.6 359 115-478 160-529 (610)
27 KOG0339 ATP-dependent RNA heli 100.0 8.4E-59 1.8E-63 448.0 31.9 367 119-488 217-586 (731)
28 PTZ00424 helicase 45; Provisio 100.0 1.7E-56 3.6E-61 464.9 42.7 366 124-495 27-392 (401)
29 KOG0332 ATP-dependent RNA heli 100.0 9E-58 1.9E-62 426.0 28.4 374 117-498 82-465 (477)
30 KOG0350 DEAD-box ATP-dependent 100.0 5E-57 1.1E-61 435.8 33.4 370 117-491 119-554 (620)
31 KOG0337 ATP-dependent RNA heli 100.0 1.4E-56 3E-61 424.3 23.9 364 124-493 20-384 (529)
32 KOG0327 Translation initiation 100.0 1.5E-55 3.1E-60 415.4 24.9 365 124-497 25-390 (397)
33 KOG0334 RNA helicase [RNA proc 100.0 2.6E-54 5.7E-59 453.9 31.1 370 118-489 358-732 (997)
34 TIGR03817 DECH_helic helicase/ 100.0 2.3E-51 4.9E-56 447.3 40.9 356 131-498 20-409 (742)
35 KOG4284 DEAD box protein [Tran 100.0 8E-53 1.7E-57 417.0 26.4 360 121-485 21-388 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 5.1E-50 1.1E-54 432.4 38.9 344 126-487 436-797 (1195)
37 KOG0344 ATP-dependent RNA heli 100.0 2.4E-51 5.2E-56 406.4 25.7 366 121-488 128-506 (593)
38 TIGR00614 recQ_fam ATP-depende 100.0 2.7E-49 5.8E-54 415.1 36.1 326 142-488 6-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.4E-47 3E-52 412.2 38.0 333 132-487 9-353 (607)
40 KOG0329 ATP-dependent RNA heli 100.0 6.9E-49 1.5E-53 348.3 16.8 332 121-494 38-373 (387)
41 TIGR01389 recQ ATP-dependent D 100.0 9.5E-47 2.1E-51 407.4 37.1 324 142-488 8-342 (591)
42 PRK13767 ATP-dependent helicas 100.0 3.5E-45 7.5E-50 406.8 37.9 341 132-476 18-397 (876)
43 PRK02362 ski2-like helicase; P 100.0 2.7E-45 5.9E-50 404.5 33.0 334 126-478 2-398 (737)
44 PRK00254 ski2-like helicase; P 100.0 5.4E-44 1.2E-48 393.2 36.1 335 126-478 2-389 (720)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.7E-43 5.7E-48 375.7 34.8 315 143-475 12-389 (844)
46 TIGR00580 mfd transcription-re 100.0 6.6E-43 1.4E-47 383.9 38.7 333 131-488 435-787 (926)
47 COG0514 RecQ Superfamily II DN 100.0 2.8E-43 6.2E-48 360.4 31.4 327 143-488 13-348 (590)
48 COG1201 Lhr Lhr-like helicases 100.0 2.6E-42 5.6E-47 366.1 36.7 338 131-476 7-361 (814)
49 PRK10689 transcription-repair 100.0 5.3E-42 1.2E-46 384.7 39.3 317 135-476 589-918 (1147)
50 PRK09401 reverse gyrase; Revie 100.0 1.6E-41 3.5E-46 381.7 37.8 283 143-449 77-410 (1176)
51 PRK10917 ATP-dependent DNA hel 100.0 3.3E-41 7.2E-46 366.5 38.1 315 137-475 252-587 (681)
52 PRK01172 ski2-like helicase; P 100.0 1.9E-41 4.1E-46 371.7 34.8 340 126-485 2-387 (674)
53 PRK09751 putative ATP-dependen 100.0 7.1E-41 1.5E-45 376.9 37.0 302 167-471 1-379 (1490)
54 TIGR00643 recG ATP-dependent D 100.0 1.1E-40 2.4E-45 360.2 37.1 317 135-475 224-564 (630)
55 PHA02653 RNA helicase NPH-II; 100.0 3.9E-41 8.6E-46 357.8 32.9 320 150-486 167-523 (675)
56 PRK12898 secA preprotein trans 100.0 7.3E-40 1.6E-44 342.2 37.5 321 143-481 100-590 (656)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.2E-40 9E-45 358.3 33.4 310 150-481 5-340 (819)
58 PRK14701 reverse gyrase; Provi 100.0 1.1E-39 2.5E-44 373.8 37.6 293 135-449 67-412 (1638)
59 PRK09200 preprotein translocas 100.0 1.2E-38 2.5E-43 340.3 39.0 321 143-481 75-545 (790)
60 PRK11664 ATP-dependent RNA hel 100.0 9.7E-40 2.1E-44 356.4 30.5 308 150-479 8-341 (812)
61 TIGR01054 rgy reverse gyrase. 100.0 5.1E-39 1.1E-43 362.1 37.0 292 135-449 66-409 (1171)
62 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-38 2.3E-43 311.9 34.0 325 146-480 14-484 (542)
63 TIGR00963 secA preprotein tran 100.0 1.9E-38 4.1E-43 333.0 38.1 321 143-481 53-521 (745)
64 TIGR03714 secA2 accessory Sec 100.0 5.8E-38 1.3E-42 331.6 38.9 322 143-481 67-541 (762)
65 KOG0349 Putative DEAD-box RNA 100.0 4.3E-40 9.4E-45 312.7 18.2 283 195-478 285-616 (725)
66 KOG0352 ATP-dependent DNA heli 100.0 5.6E-39 1.2E-43 304.8 23.6 334 135-488 6-373 (641)
67 PHA02558 uvsW UvsW helicase; P 100.0 1.8E-37 3.9E-42 327.2 30.8 303 145-468 112-443 (501)
68 COG1202 Superfamily II helicas 100.0 1.6E-37 3.4E-42 305.4 27.0 337 126-477 195-553 (830)
69 TIGR01587 cas3_core CRISPR-ass 100.0 7.1E-37 1.5E-41 312.5 27.9 302 164-478 1-337 (358)
70 PRK13766 Hef nuclease; Provisi 100.0 3.5E-35 7.5E-40 328.5 38.7 325 146-479 14-481 (773)
71 KOG0354 DEAD-box like helicase 100.0 3E-36 6.6E-41 312.0 27.1 333 145-486 60-538 (746)
72 KOG0351 ATP-dependent DNA heli 100.0 4.9E-36 1.1E-40 324.9 27.5 338 135-488 252-603 (941)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-34 2.3E-39 292.8 31.2 293 151-462 1-357 (357)
74 COG1204 Superfamily II helicas 100.0 3.3E-35 7.2E-40 316.7 27.5 333 131-474 15-405 (766)
75 PRK11131 ATP-dependent RNA hel 100.0 5.8E-35 1.3E-39 323.6 29.1 306 149-480 76-414 (1294)
76 COG1205 Distinct helicase fami 100.0 2.6E-34 5.5E-39 314.3 32.8 338 132-475 55-420 (851)
77 KOG0353 ATP-dependent DNA heli 100.0 6.3E-34 1.4E-38 266.7 29.5 341 129-486 75-476 (695)
78 PRK13104 secA preprotein trans 100.0 4.3E-33 9.3E-38 296.6 39.1 321 143-481 79-591 (896)
79 PRK04914 ATP-dependent helicas 100.0 4.3E-33 9.3E-38 305.1 34.8 336 147-491 152-617 (956)
80 TIGR00603 rad25 DNA repair hel 100.0 1.6E-33 3.4E-38 298.1 29.9 310 147-481 255-611 (732)
81 PRK12904 preprotein translocas 100.0 8E-32 1.7E-36 286.9 38.9 321 143-481 78-577 (830)
82 PRK12899 secA preprotein trans 100.0 1.4E-31 3E-36 284.3 39.1 148 128-284 65-228 (970)
83 PRK12906 secA preprotein trans 100.0 7.1E-32 1.5E-36 286.2 36.4 321 143-481 77-557 (796)
84 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.1E-32 4.6E-37 304.5 30.1 303 153-479 73-406 (1283)
85 PRK05580 primosome assembly pr 100.0 3.6E-31 7.8E-36 286.8 34.2 320 147-486 144-558 (679)
86 KOG0952 DNA/RNA helicase MER3/ 100.0 1.7E-31 3.7E-36 279.5 27.6 335 141-482 104-496 (1230)
87 PRK13107 preprotein translocas 100.0 2.3E-30 5E-35 274.9 35.5 321 143-481 79-595 (908)
88 KOG0947 Cytoplasmic exosomal R 100.0 5.9E-30 1.3E-34 265.0 37.0 325 141-485 292-733 (1248)
89 cd00268 DEADc DEAD-box helicas 100.0 2.9E-30 6.3E-35 242.0 24.8 202 127-330 1-202 (203)
90 KOG0926 DEAH-box RNA helicase 100.0 1.6E-30 3.6E-35 264.3 23.1 332 130-476 242-703 (1172)
91 PRK09694 helicase Cas3; Provis 100.0 1.3E-28 2.8E-33 268.4 38.3 313 146-466 285-664 (878)
92 COG1200 RecG RecG-like helicas 100.0 5E-29 1.1E-33 254.8 32.2 324 130-478 245-592 (677)
93 COG1061 SSL2 DNA or RNA helica 100.0 5.4E-30 1.2E-34 264.9 25.5 298 147-469 36-382 (442)
94 PLN03142 Probable chromatin-re 100.0 7.2E-29 1.6E-33 272.8 33.4 327 147-486 169-610 (1033)
95 TIGR00595 priA primosomal prot 100.0 2.4E-29 5.1E-34 263.1 27.3 300 166-485 1-389 (505)
96 KOG0385 Chromatin remodeling c 100.0 4.2E-29 9.1E-34 253.7 25.9 313 147-477 167-599 (971)
97 COG4581 Superfamily II RNA hel 100.0 9.9E-28 2.2E-32 258.6 32.1 320 140-476 113-536 (1041)
98 COG1197 Mfd Transcription-repa 100.0 1.6E-27 3.4E-32 257.1 33.4 332 131-487 578-929 (1139)
99 COG1643 HrpA HrpA-like helicas 100.0 2.4E-28 5.1E-33 262.1 25.8 312 148-479 51-389 (845)
100 KOG0948 Nuclear exosomal RNA h 100.0 2.6E-29 5.6E-34 254.2 16.1 321 147-487 129-550 (1041)
101 KOG0922 DEAH-box RNA helicase 100.0 2.6E-28 5.7E-33 246.8 23.2 313 148-481 52-394 (674)
102 PRK12900 secA preprotein trans 100.0 2.8E-27 6.1E-32 252.3 31.8 125 355-481 581-715 (1025)
103 KOG0387 Transcription-coupled 100.0 5.9E-27 1.3E-31 239.4 29.8 339 130-488 196-672 (923)
104 KOG0951 RNA helicase BRR2, DEA 100.0 3.2E-27 6.9E-32 250.6 26.8 346 132-484 296-709 (1674)
105 COG4098 comFA Superfamily II D 100.0 2.5E-26 5.4E-31 213.8 29.2 309 147-482 97-421 (441)
106 PRK12326 preprotein translocas 100.0 5.5E-26 1.2E-30 236.1 33.7 320 143-481 75-551 (764)
107 PRK11448 hsdR type I restricti 100.0 1E-26 2.2E-31 260.9 28.4 305 147-465 413-801 (1123)
108 KOG0923 mRNA splicing factor A 100.0 4.4E-27 9.6E-32 235.3 20.8 314 144-477 262-606 (902)
109 KOG2340 Uncharacterized conser 99.9 9.1E-27 2E-31 227.7 17.7 344 143-486 212-677 (698)
110 COG1110 Reverse gyrase [DNA re 99.9 9.7E-25 2.1E-29 229.4 30.4 353 143-523 79-606 (1187)
111 PF00270 DEAD: DEAD/DEAH box h 99.9 1E-25 2.2E-30 204.8 18.7 165 149-318 1-168 (169)
112 PRK13103 secA preprotein trans 99.9 5.9E-24 1.3E-28 226.4 34.8 320 143-481 79-595 (913)
113 KOG0924 mRNA splicing factor A 99.9 2.1E-25 4.6E-30 223.8 21.5 312 144-477 353-697 (1042)
114 KOG0950 DNA polymerase theta/e 99.9 1.4E-25 3.1E-30 234.5 20.8 340 131-487 207-621 (1008)
115 KOG0384 Chromodomain-helicase 99.9 2.2E-26 4.7E-31 245.0 14.9 329 146-487 369-823 (1373)
116 PRK12903 secA preprotein trans 99.9 1.2E-23 2.7E-28 221.5 35.1 320 143-481 75-543 (925)
117 PF06862 DUF1253: Protein of u 99.9 5.9E-24 1.3E-28 212.6 28.2 299 189-487 30-425 (442)
118 KOG0920 ATP-dependent RNA heli 99.9 6.7E-24 1.4E-28 226.8 25.6 331 133-478 159-545 (924)
119 CHL00122 secA preprotein trans 99.9 2.7E-22 5.9E-27 212.9 35.8 322 143-481 73-635 (870)
120 COG1203 CRISPR-associated heli 99.9 1.6E-22 3.5E-27 221.6 28.2 328 148-482 196-555 (733)
121 PRK05298 excinuclease ABC subu 99.9 6.2E-22 1.3E-26 214.0 31.9 169 369-542 445-627 (652)
122 COG1198 PriA Primosomal protei 99.9 4.5E-22 9.7E-27 210.9 28.7 321 146-487 197-613 (730)
123 PRK12902 secA preprotein trans 99.9 6.8E-21 1.5E-25 201.7 37.0 277 143-436 82-505 (939)
124 TIGR00631 uvrb excinuclease AB 99.9 3.1E-21 6.7E-26 206.8 32.1 119 368-487 440-563 (655)
125 KOG0392 SNF2 family DNA-depend 99.9 2.1E-22 4.6E-27 214.0 21.1 322 148-478 976-1455(1549)
126 KOG0925 mRNA splicing factor A 99.9 7E-22 1.5E-26 191.8 21.6 329 124-477 24-387 (699)
127 KOG0389 SNF2 family DNA-depend 99.9 3.6E-22 7.7E-27 204.4 19.2 322 148-479 400-890 (941)
128 COG0556 UvrB Helicase subunit 99.9 1.7E-20 3.8E-25 184.8 29.2 174 302-485 386-565 (663)
129 TIGR01407 dinG_rel DnaQ family 99.9 2.2E-20 4.8E-25 209.2 32.5 327 132-473 231-811 (850)
130 KOG0391 SNF2 family DNA-depend 99.9 2.5E-20 5.4E-25 196.5 27.4 111 367-477 1273-1387(1958)
131 PRK12901 secA preprotein trans 99.9 5.3E-20 1.2E-24 196.9 29.7 318 147-481 169-745 (1112)
132 KOG0386 Chromatin remodeling c 99.9 1E-21 2.2E-26 205.8 15.1 333 145-488 392-847 (1157)
133 KOG0390 DNA repair protein, SN 99.9 5.9E-20 1.3E-24 193.5 27.6 333 147-487 238-720 (776)
134 TIGR00348 hsdR type I site-spe 99.9 7.6E-20 1.6E-24 198.6 28.9 301 148-464 239-634 (667)
135 COG4096 HsdR Type I site-speci 99.9 5.2E-20 1.1E-24 191.4 23.8 296 147-463 165-524 (875)
136 KOG0949 Predicted helicase, DE 99.9 4E-20 8.6E-25 193.0 21.6 161 147-315 511-674 (1330)
137 smart00487 DEXDc DEAD-like hel 99.8 1.6E-19 3.5E-24 168.5 21.2 186 143-333 4-191 (201)
138 KOG1000 Chromatin remodeling p 99.8 1.1E-18 2.4E-23 170.1 25.3 327 145-488 196-616 (689)
139 KOG1123 RNA polymerase II tran 99.8 1.3E-19 2.8E-24 176.7 17.4 312 146-482 301-658 (776)
140 KOG0388 SNF2 family DNA-depend 99.8 2.1E-19 4.5E-24 181.5 18.0 112 367-478 1041-1155(1185)
141 PRK07246 bifunctional ATP-depe 99.8 4E-17 8.8E-22 180.4 33.3 326 143-489 242-797 (820)
142 cd00079 HELICc Helicase superf 99.7 1.1E-17 2.5E-22 144.8 12.6 117 357-473 13-131 (131)
143 PF00271 Helicase_C: Helicase 99.7 6E-18 1.3E-22 131.7 8.9 78 388-465 1-78 (78)
144 KOG0953 Mitochondrial RNA heli 99.7 2.1E-17 4.6E-22 163.7 14.4 275 164-487 193-486 (700)
145 PRK08074 bifunctional ATP-depe 99.7 1.4E-15 3E-20 171.5 30.1 121 368-488 750-906 (928)
146 KOG4150 Predicted ATP-dependen 99.7 2.4E-16 5.3E-21 156.1 19.6 347 137-491 276-656 (1034)
147 COG4889 Predicted helicase [Ge 99.7 1.6E-17 3.6E-22 171.6 11.4 314 139-463 153-571 (1518)
148 TIGR03117 cas_csf4 CRISPR-asso 99.7 7.5E-15 1.6E-19 155.2 31.3 80 368-449 468-561 (636)
149 KOG1002 Nucleotide excision re 99.7 3.8E-15 8.3E-20 145.5 26.2 110 369-478 637-750 (791)
150 cd00046 DEXDc DEAD-like helica 99.7 4.1E-16 8.9E-21 136.7 16.7 144 163-312 1-144 (144)
151 COG0653 SecA Preprotein transl 99.7 1.5E-15 3.2E-20 161.2 23.4 316 148-480 81-548 (822)
152 KOG4439 RNA polymerase II tran 99.7 2.6E-15 5.5E-20 152.7 19.1 107 367-473 743-852 (901)
153 KOG1015 Transcription regulato 99.7 4.7E-15 1E-19 154.6 18.7 106 368-473 1140-1271(1567)
154 PF04851 ResIII: Type III rest 99.7 5.9E-16 1.3E-20 142.5 10.8 153 147-313 3-183 (184)
155 PRK14873 primosome assembly pr 99.6 4.2E-14 9E-19 151.7 25.2 137 168-320 166-311 (665)
156 COG1199 DinG Rad3-related DNA 99.6 1.1E-13 2.5E-18 152.5 28.9 125 362-490 472-632 (654)
157 KOG0951 RNA helicase BRR2, DEA 99.6 2E-14 4.4E-19 154.4 20.5 314 148-486 1144-1503(1674)
158 PRK11747 dinG ATP-dependent DN 99.6 1.5E-12 3.2E-17 142.5 32.8 77 369-449 533-616 (697)
159 smart00490 HELICc helicase sup 99.6 4.4E-15 9.5E-20 116.8 8.8 81 385-465 2-82 (82)
160 TIGR00604 rad3 DNA repair heli 99.6 6E-13 1.3E-17 146.8 28.5 75 143-220 6-84 (705)
161 COG0553 HepA Superfamily II DN 99.6 1.2E-13 2.7E-18 158.4 23.7 102 372-473 713-816 (866)
162 TIGR02562 cas3_yersinia CRISPR 99.5 8.4E-13 1.8E-17 143.1 21.6 311 148-466 409-881 (1110)
163 PF02399 Herpes_ori_bp: Origin 99.5 3E-12 6.4E-17 135.5 23.3 287 164-475 51-386 (824)
164 PF07652 Flavi_DEAD: Flaviviru 99.4 3.8E-12 8.3E-17 106.8 10.8 135 162-316 4-140 (148)
165 PF00176 SNF2_N: SNF2 family N 99.4 3E-12 6.6E-17 127.6 11.5 156 151-314 1-174 (299)
166 COG0610 Type I site-specific r 99.3 1.7E-09 3.8E-14 121.6 29.3 287 163-463 274-635 (962)
167 PF07517 SecA_DEAD: SecA DEAD- 99.3 1.3E-10 2.7E-15 110.5 15.3 131 143-284 74-210 (266)
168 KOG0921 Dosage compensation co 99.2 3.9E-11 8.4E-16 125.5 11.1 314 151-476 382-773 (1282)
169 KOG1016 Predicted DNA helicase 99.2 2E-09 4.4E-14 111.1 21.4 131 370-500 719-872 (1387)
170 smart00488 DEXDc2 DEAD-like he 99.2 3E-10 6.5E-15 111.2 14.2 76 143-219 5-84 (289)
171 smart00489 DEXDc3 DEAD-like he 99.2 3E-10 6.5E-15 111.2 14.2 76 143-219 5-84 (289)
172 PRK15483 type III restriction- 98.6 6.5E-07 1.4E-11 98.5 14.8 71 420-490 501-581 (986)
173 KOG1001 Helicase-like transcri 98.6 1.3E-07 2.8E-12 101.5 9.1 101 372-472 541-643 (674)
174 TIGR00596 rad1 DNA repair prot 98.6 1.9E-06 4.1E-11 94.8 18.1 69 245-314 6-74 (814)
175 KOG1132 Helicase of the DEAD s 98.5 2.9E-05 6.2E-10 83.0 24.6 83 366-449 557-656 (945)
176 KOG0952 DNA/RNA helicase MER3/ 98.4 1.4E-07 3.1E-12 101.4 4.0 224 148-384 928-1167(1230)
177 PF13086 AAA_11: AAA domain; P 98.4 1.2E-06 2.5E-11 83.8 8.5 71 147-218 1-75 (236)
178 PF13307 Helicase_C_2: Helicas 98.4 1.6E-06 3.5E-11 77.8 8.8 79 369-449 8-92 (167)
179 COG3587 Restriction endonuclea 98.4 2.5E-05 5.5E-10 83.0 18.5 71 420-490 483-566 (985)
180 PF13872 AAA_34: P-loop contai 98.2 1.1E-05 2.5E-10 77.0 11.5 173 129-318 25-226 (303)
181 PF13604 AAA_30: AAA domain; P 98.2 5.8E-06 1.3E-10 76.3 9.1 124 147-311 1-130 (196)
182 PF02562 PhoH: PhoH-like prote 98.2 2.8E-06 6E-11 77.7 5.6 146 146-311 3-155 (205)
183 KOG1131 RNA polymerase II tran 98.1 5.8E-05 1.3E-09 75.8 14.7 109 367-476 527-679 (755)
184 PF12340 DUF3638: Protein of u 98.1 4.9E-05 1.1E-09 70.1 13.1 152 126-285 4-186 (229)
185 PRK10536 hypothetical protein; 98.1 4.8E-05 1E-09 71.6 12.8 143 144-309 56-210 (262)
186 KOG1802 RNA helicase nonsense 98.1 1.5E-05 3.2E-10 82.3 9.6 85 139-232 402-486 (935)
187 TIGR01447 recD exodeoxyribonuc 98.1 4.1E-05 8.8E-10 82.2 12.8 143 149-310 147-294 (586)
188 KOG1803 DNA helicase [Replicat 98.0 2.1E-05 4.6E-10 80.8 9.8 64 147-216 185-249 (649)
189 PF13245 AAA_19: Part of AAA d 98.0 1.7E-05 3.7E-10 60.3 6.7 60 155-216 2-62 (76)
190 KOG0383 Predicted helicase [Ge 98.0 7.7E-07 1.7E-11 94.4 -1.0 65 368-433 629-696 (696)
191 PRK10875 recD exonuclease V su 98.0 6.4E-05 1.4E-09 80.9 12.0 143 149-311 154-301 (615)
192 TIGR00376 DNA helicase, putati 97.9 8.3E-05 1.8E-09 81.0 12.6 67 146-218 156-223 (637)
193 PF09848 DUF2075: Uncharacteri 97.9 3E-05 6.5E-10 78.8 8.1 108 164-298 3-117 (352)
194 TIGR01448 recD_rel helicase, p 97.8 0.00022 4.8E-09 78.9 13.6 129 143-311 320-452 (720)
195 PF13401 AAA_22: AAA domain; P 97.5 0.00023 5E-09 61.0 6.2 37 273-312 89-125 (131)
196 PF00580 UvrD-helicase: UvrD/R 97.4 0.00029 6.3E-09 70.6 7.1 124 148-281 1-125 (315)
197 PRK04296 thymidine kinase; Pro 97.4 0.00062 1.3E-08 62.5 8.2 110 163-312 3-115 (190)
198 smart00492 HELICc3 helicase su 97.4 0.0014 3E-08 56.7 9.7 52 398-449 25-79 (141)
199 PRK12723 flagellar biosynthesi 97.4 0.0027 5.8E-08 64.5 13.2 130 163-323 175-309 (388)
200 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0041 8.9E-08 69.3 15.2 60 147-212 352-412 (744)
201 COG1875 NYN ribonuclease and A 97.3 0.00095 2.1E-08 65.0 8.1 64 142-208 223-288 (436)
202 smart00491 HELICc2 helicase su 97.2 0.0018 3.9E-08 56.1 8.7 67 383-449 4-80 (142)
203 PRK14974 cell division protein 97.2 0.0061 1.3E-07 60.8 13.4 129 164-323 142-275 (336)
204 PRK13889 conjugal transfer rel 97.2 0.0063 1.4E-07 69.0 14.8 126 143-311 343-470 (988)
205 PRK08181 transposase; Validate 97.2 0.0088 1.9E-07 57.8 13.7 110 158-315 102-212 (269)
206 PRK06526 transposase; Provisio 97.2 0.0047 1E-07 59.3 11.5 46 270-315 158-204 (254)
207 PRK14722 flhF flagellar biosyn 97.1 0.0031 6.6E-08 63.6 10.0 130 162-323 137-269 (374)
208 COG1419 FlhF Flagellar GTP-bin 97.1 0.014 3.1E-07 58.5 14.3 133 162-325 203-337 (407)
209 KOG1805 DNA replication helica 97.1 0.0025 5.5E-08 69.3 9.3 136 131-285 657-810 (1100)
210 PRK13826 Dtr system oriT relax 97.0 0.014 3.1E-07 66.6 15.4 138 131-311 366-505 (1102)
211 PF13871 Helicase_C_4: Helicas 97.0 0.002 4.3E-08 61.7 7.4 79 410-488 51-141 (278)
212 cd00009 AAA The AAA+ (ATPases 97.0 0.011 2.3E-07 51.3 11.5 25 162-187 19-43 (151)
213 PF05970 PIF1: PIF1-like helic 96.9 0.0035 7.5E-08 64.0 9.0 60 147-212 1-66 (364)
214 PRK06921 hypothetical protein; 96.9 0.0088 1.9E-07 57.9 11.3 45 161-211 116-160 (266)
215 PHA02533 17 large terminase pr 96.9 0.0085 1.8E-07 63.8 11.9 148 147-312 59-210 (534)
216 PF00448 SRP54: SRP54-type pro 96.9 0.0037 8E-08 57.5 8.0 126 165-320 4-133 (196)
217 PF14617 CMS1: U3-containing 9 96.9 0.0033 7.2E-08 59.4 7.7 88 193-282 123-212 (252)
218 PRK05703 flhF flagellar biosyn 96.9 0.02 4.4E-07 59.3 13.8 127 162-323 221-354 (424)
219 smart00382 AAA ATPases associa 96.8 0.003 6.5E-08 54.5 6.6 42 162-209 2-43 (148)
220 KOG0298 DEAD box-containing he 96.8 0.0026 5.6E-08 71.1 7.2 153 162-319 374-557 (1394)
221 KOG0989 Replication factor C, 96.8 0.0045 9.7E-08 59.0 7.3 47 266-313 124-170 (346)
222 PRK11889 flhF flagellar biosyn 96.7 0.028 6E-07 56.6 12.8 128 163-323 242-374 (436)
223 PRK07952 DNA replication prote 96.6 0.027 5.8E-07 53.6 11.9 108 163-316 100-209 (244)
224 PRK06835 DNA replication prote 96.6 0.033 7.2E-07 55.5 12.6 44 162-212 183-226 (329)
225 PRK12377 putative replication 96.6 0.026 5.6E-07 53.8 11.2 44 162-212 101-144 (248)
226 KOG1133 Helicase of the DEAD s 96.5 0.21 4.7E-06 53.0 18.3 106 367-475 626-778 (821)
227 PRK08727 hypothetical protein; 96.5 0.014 3E-07 55.6 9.2 46 270-315 92-138 (233)
228 PRK11054 helD DNA helicase IV; 96.5 0.0097 2.1E-07 65.4 9.0 75 142-220 191-265 (684)
229 PRK08116 hypothetical protein; 96.5 0.043 9.2E-07 53.3 12.5 43 163-212 115-157 (268)
230 PRK10919 ATP-dependent DNA hel 96.4 0.0057 1.2E-07 67.6 6.9 70 147-220 2-71 (672)
231 PRK05642 DNA replication initi 96.4 0.017 3.7E-07 54.9 8.9 45 271-315 97-142 (234)
232 PF05127 Helicase_RecD: Helica 96.4 0.0019 4.2E-08 57.6 2.1 124 166-313 1-124 (177)
233 PRK06893 DNA replication initi 96.3 0.016 3.5E-07 55.0 8.4 47 270-316 90-138 (229)
234 PTZ00293 thymidine kinase; Pro 96.3 0.017 3.6E-07 53.2 8.0 39 162-206 4-42 (211)
235 COG1444 Predicted P-loop ATPas 96.3 0.03 6.4E-07 60.9 10.8 144 145-313 212-357 (758)
236 PF03354 Terminase_1: Phage Te 96.3 0.018 3.8E-07 61.2 9.2 149 150-308 1-159 (477)
237 cd01120 RecA-like_NTPases RecA 96.3 0.051 1.1E-06 48.1 11.0 44 270-313 84-137 (165)
238 TIGR02760 TraI_TIGR conjugativ 96.2 0.58 1.2E-05 58.0 22.7 135 147-311 429-566 (1960)
239 PRK14087 dnaA chromosomal repl 96.2 0.04 8.7E-07 57.7 11.1 109 163-315 142-251 (450)
240 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.024 5.2E-07 53.7 8.7 42 272-313 91-133 (226)
241 COG3421 Uncharacterized protei 96.1 0.0044 9.5E-08 64.0 3.5 113 167-284 2-125 (812)
242 PRK08084 DNA replication initi 96.1 0.035 7.7E-07 52.8 9.3 43 272-314 98-142 (235)
243 PRK00149 dnaA chromosomal repl 96.1 0.031 6.6E-07 59.0 9.6 106 163-315 149-256 (450)
244 COG3973 Superfamily I DNA and 96.0 0.027 5.8E-07 58.7 8.6 89 131-220 188-284 (747)
245 COG1484 DnaC DNA replication p 96.0 0.043 9.4E-07 52.7 9.6 50 161-217 104-153 (254)
246 TIGR01075 uvrD DNA helicase II 96.0 0.013 2.9E-07 65.5 6.8 72 146-221 3-74 (715)
247 TIGR00362 DnaA chromosomal rep 95.9 0.047 1E-06 56.8 10.3 37 163-203 137-173 (405)
248 TIGR01074 rep ATP-dependent DN 95.9 0.017 3.7E-07 64.3 7.3 70 148-221 2-71 (664)
249 COG2805 PilT Tfp pilus assembl 95.9 0.023 5E-07 54.2 6.8 53 121-192 102-154 (353)
250 PRK12727 flagellar biosynthesi 95.8 0.19 4.1E-06 52.8 13.8 64 253-322 415-480 (559)
251 PRK00771 signal recognition pa 95.8 0.14 3E-06 53.2 12.9 51 272-322 176-227 (437)
252 PRK11773 uvrD DNA-dependent he 95.8 0.019 4.2E-07 64.2 7.2 71 147-221 9-79 (721)
253 PHA03333 putative ATPase subun 95.8 0.23 5E-06 53.4 14.5 152 145-313 167-333 (752)
254 cd01124 KaiC KaiC is a circadi 95.8 0.078 1.7E-06 48.4 10.1 48 165-219 2-49 (187)
255 COG4962 CpaF Flp pilus assembl 95.7 0.021 4.6E-07 55.8 6.2 64 141-211 151-215 (355)
256 PRK14712 conjugal transfer nic 95.7 0.067 1.5E-06 63.4 11.0 64 147-212 835-900 (1623)
257 PRK07003 DNA polymerase III su 95.7 0.09 1.9E-06 57.3 11.1 41 270-312 118-158 (830)
258 PRK07764 DNA polymerase III su 95.7 0.1 2.2E-06 58.5 12.0 40 269-309 118-157 (824)
259 PRK14088 dnaA chromosomal repl 95.6 0.091 2E-06 55.0 11.0 38 163-204 131-168 (440)
260 PRK13709 conjugal transfer nic 95.6 0.082 1.8E-06 63.5 11.7 64 147-212 967-1032(1747)
261 cd01122 GP4d_helicase GP4d_hel 95.6 0.043 9.2E-07 53.6 8.1 117 159-285 27-154 (271)
262 PRK08769 DNA polymerase III su 95.6 0.094 2E-06 52.0 10.3 45 145-190 2-53 (319)
263 PRK12726 flagellar biosynthesi 95.6 0.24 5.2E-06 49.8 13.0 126 162-320 206-336 (407)
264 PRK06731 flhF flagellar biosyn 95.6 0.24 5.2E-06 47.9 12.7 130 161-323 74-208 (270)
265 PRK14086 dnaA chromosomal repl 95.5 0.077 1.7E-06 56.8 9.7 47 270-316 376-424 (617)
266 PF05876 Terminase_GpA: Phage 95.5 0.05 1.1E-06 58.6 8.5 125 147-284 16-147 (557)
267 PF13177 DNA_pol3_delta2: DNA 95.5 0.27 5.9E-06 43.7 11.9 43 270-313 101-143 (162)
268 PRK11331 5-methylcytosine-spec 95.5 0.063 1.4E-06 55.2 8.6 32 148-179 180-211 (459)
269 PRK14723 flhF flagellar biosyn 95.4 0.098 2.1E-06 57.5 10.6 122 162-315 185-308 (767)
270 PRK12422 chromosomal replicati 95.4 0.11 2.3E-06 54.4 10.5 48 270-317 201-250 (445)
271 PRK09183 transposase/IS protei 95.4 0.11 2.3E-06 50.2 9.7 21 159-179 99-119 (259)
272 TIGR01547 phage_term_2 phage t 95.3 0.051 1.1E-06 56.4 7.9 143 165-323 4-151 (396)
273 PRK08903 DnaA regulatory inact 95.3 0.088 1.9E-06 49.9 8.9 43 271-314 90-133 (227)
274 PRK08691 DNA polymerase III su 95.3 0.16 3.4E-06 55.2 11.5 40 269-309 117-156 (709)
275 PRK14956 DNA polymerase III su 95.3 0.04 8.6E-07 57.3 6.8 16 164-179 42-57 (484)
276 TIGR02881 spore_V_K stage V sp 95.3 0.13 2.9E-06 49.8 10.2 17 163-179 43-59 (261)
277 PF00308 Bac_DnaA: Bacterial d 95.3 0.056 1.2E-06 50.8 7.3 48 269-316 95-144 (219)
278 COG1474 CDC6 Cdc6-related prot 95.3 0.22 4.9E-06 50.5 12.0 34 156-190 34-69 (366)
279 PRK12323 DNA polymerase III su 95.3 0.084 1.8E-06 56.7 9.2 40 269-309 122-161 (700)
280 KOG1513 Nuclear helicase MOP-3 95.3 0.021 4.5E-07 60.9 4.6 160 145-312 262-454 (1300)
281 PRK14721 flhF flagellar biosyn 95.3 0.21 4.6E-06 51.4 11.8 131 162-323 191-323 (420)
282 PLN03025 replication factor C 95.2 0.19 4.2E-06 50.3 11.2 42 270-313 98-139 (319)
283 CHL00181 cbbX CbbX; Provisiona 95.2 0.24 5.3E-06 48.5 11.6 18 162-179 59-76 (287)
284 TIGR00064 ftsY signal recognit 95.2 0.33 7.1E-06 47.2 12.3 53 270-322 153-212 (272)
285 PRK12724 flagellar biosynthesi 95.1 0.34 7.4E-06 49.5 12.6 54 270-323 298-356 (432)
286 COG1435 Tdk Thymidine kinase [ 95.1 0.13 2.8E-06 46.2 8.5 90 164-284 6-95 (201)
287 TIGR01425 SRP54_euk signal rec 95.1 0.23 5E-06 51.1 11.5 130 164-323 102-235 (429)
288 PRK09112 DNA polymerase III su 95.1 0.16 3.4E-06 51.4 10.2 40 269-309 139-178 (351)
289 TIGR02785 addA_Gpos recombinat 95.1 0.05 1.1E-06 64.5 7.6 125 147-282 1-126 (1232)
290 PRK14960 DNA polymerase III su 95.1 0.095 2.1E-06 56.4 8.9 41 270-312 117-157 (702)
291 PF00004 AAA: ATPase family as 95.1 0.035 7.6E-07 47.3 4.8 14 165-178 1-14 (132)
292 PRK13833 conjugal transfer pro 95.0 0.074 1.6E-06 52.7 7.5 58 148-209 129-187 (323)
293 TIGR01073 pcrA ATP-dependent D 95.0 0.049 1.1E-06 61.2 7.0 72 146-221 3-74 (726)
294 PTZ00112 origin recognition co 95.0 0.15 3.2E-06 56.4 10.1 41 270-311 868-909 (1164)
295 PRK14958 DNA polymerase III su 95.0 0.055 1.2E-06 57.5 6.9 39 270-309 118-156 (509)
296 KOG0991 Replication factor C, 95.0 0.074 1.6E-06 48.8 6.6 40 266-306 108-147 (333)
297 PHA02544 44 clamp loader, smal 95.0 0.13 2.8E-06 51.5 9.4 40 271-311 100-139 (316)
298 PRK05986 cob(I)alamin adenolsy 95.0 0.064 1.4E-06 48.5 6.2 145 161-321 21-167 (191)
299 PRK14964 DNA polymerase III su 94.9 0.21 4.5E-06 52.6 10.8 18 163-180 36-53 (491)
300 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.33 7.1E-06 42.7 10.4 53 269-321 93-147 (159)
301 TIGR02782 TrbB_P P-type conjug 94.9 0.38 8.3E-06 47.5 12.2 58 148-209 117-175 (299)
302 PRK08939 primosomal protein Dn 94.8 0.19 4.2E-06 49.7 9.9 27 162-189 156-182 (306)
303 PRK12402 replication factor C 94.8 0.19 4.1E-06 50.8 10.2 40 270-311 124-163 (337)
304 PRK06995 flhF flagellar biosyn 94.8 0.35 7.5E-06 50.7 11.9 18 162-179 256-273 (484)
305 PRK07471 DNA polymerase III su 94.8 0.19 4.1E-06 51.0 9.8 133 164-311 43-180 (365)
306 PRK14952 DNA polymerase III su 94.7 0.33 7.2E-06 52.4 12.0 44 269-314 116-159 (584)
307 PRK06645 DNA polymerase III su 94.7 0.21 4.5E-06 52.9 10.3 17 163-179 44-60 (507)
308 PF13173 AAA_14: AAA domain 94.7 0.34 7.5E-06 41.1 10.0 39 271-313 61-99 (128)
309 PRK05707 DNA polymerase III su 94.7 0.041 8.8E-07 55.0 4.7 42 147-189 3-48 (328)
310 PRK00411 cdc6 cell division co 94.7 0.18 4E-06 52.2 9.8 25 163-188 56-80 (394)
311 PF06745 KaiC: KaiC; InterPro 94.6 0.093 2E-06 49.7 6.9 133 162-312 19-160 (226)
312 COG3972 Superfamily I DNA and 94.6 0.1 2.3E-06 53.1 7.3 79 136-220 152-230 (660)
313 KOG0739 AAA+-type ATPase [Post 94.6 0.71 1.5E-05 44.2 12.2 152 124-331 129-297 (439)
314 PRK14949 DNA polymerase III su 94.6 0.32 7E-06 54.2 11.6 43 270-314 118-160 (944)
315 PRK09111 DNA polymerase III su 94.6 0.21 4.5E-06 54.2 10.0 40 269-309 130-169 (598)
316 PRK14957 DNA polymerase III su 94.6 0.26 5.7E-06 52.6 10.7 40 269-309 117-156 (546)
317 PRK13894 conjugal transfer ATP 94.5 0.1 2.2E-06 51.9 7.0 64 139-208 126-190 (319)
318 PRK10917 ATP-dependent DNA hel 94.4 0.28 6.1E-06 54.5 11.0 77 369-445 309-390 (681)
319 TIGR03015 pepcterm_ATPase puta 94.4 0.72 1.6E-05 44.8 12.8 31 148-178 24-59 (269)
320 COG2256 MGS1 ATPase related to 94.4 0.099 2.1E-06 52.1 6.4 17 163-179 49-65 (436)
321 COG0552 FtsY Signal recognitio 94.4 0.83 1.8E-05 44.8 12.6 130 165-323 142-280 (340)
322 PF05729 NACHT: NACHT domain 94.4 0.21 4.5E-06 44.4 8.2 46 164-210 2-47 (166)
323 PRK14961 DNA polymerase III su 94.3 0.17 3.7E-06 51.7 8.4 38 270-308 118-155 (363)
324 PRK08533 flagellar accessory p 94.3 0.42 9.1E-06 45.3 10.5 52 160-218 22-73 (230)
325 PRK14963 DNA polymerase III su 94.3 0.29 6.3E-06 52.0 10.3 23 165-188 39-61 (504)
326 PRK04195 replication factor C 94.3 0.28 6.2E-06 52.2 10.3 17 162-178 39-55 (482)
327 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.22 4.8E-06 47.5 8.5 51 162-219 21-71 (237)
328 KOG0733 Nuclear AAA ATPase (VC 94.2 0.22 4.7E-06 52.4 8.7 49 270-318 603-661 (802)
329 PF05621 TniB: Bacterial TniB 94.2 0.29 6.3E-06 47.5 9.1 121 163-311 62-188 (302)
330 PRK14951 DNA polymerase III su 94.1 0.25 5.5E-06 53.5 9.5 19 269-287 122-140 (618)
331 PRK10867 signal recognition pa 94.1 0.64 1.4E-05 48.2 12.0 24 164-188 102-125 (433)
332 PRK14962 DNA polymerase III su 94.1 0.25 5.4E-06 52.0 9.2 16 164-179 38-53 (472)
333 TIGR02880 cbbX_cfxQ probable R 94.1 0.45 9.7E-06 46.7 10.5 18 162-179 58-75 (284)
334 PRK05580 primosome assembly pr 94.1 0.24 5.2E-06 54.9 9.5 76 370-446 190-266 (679)
335 COG1110 Reverse gyrase [DNA re 94.1 0.25 5.4E-06 55.0 9.2 74 357-430 112-191 (1187)
336 PRK14969 DNA polymerase III su 94.0 0.35 7.5E-06 51.9 10.2 40 269-309 117-156 (527)
337 PRK07994 DNA polymerase III su 93.9 0.28 6.1E-06 53.3 9.4 37 270-307 118-154 (647)
338 PRK05563 DNA polymerase III su 93.9 0.24 5.3E-06 53.4 9.0 18 269-286 117-134 (559)
339 PF05496 RuvB_N: Holliday junc 93.9 0.16 3.5E-06 47.0 6.5 16 164-179 52-67 (233)
340 COG2804 PulE Type II secretory 93.8 0.086 1.9E-06 54.4 5.0 43 148-191 242-286 (500)
341 PRK06871 DNA polymerase III su 93.8 0.28 6.1E-06 48.8 8.5 42 148-190 3-51 (325)
342 PRK06964 DNA polymerase III su 93.7 0.61 1.3E-05 46.8 10.8 42 148-190 2-48 (342)
343 PRK08699 DNA polymerase III su 93.7 0.98 2.1E-05 45.1 12.3 40 148-188 2-46 (325)
344 TIGR02760 TraI_TIGR conjugativ 93.7 0.38 8.3E-06 59.5 11.1 62 146-212 1018-1084(1960)
345 KOG2036 Predicted P-loop ATPas 93.7 0.71 1.5E-05 49.1 11.3 135 149-313 255-412 (1011)
346 TIGR00708 cobA cob(I)alamin ad 93.6 0.14 3E-06 45.6 5.4 53 269-321 95-149 (173)
347 TIGR02688 conserved hypothetic 93.6 0.27 5.8E-06 50.1 7.9 50 131-180 171-227 (449)
348 KOG0738 AAA+-type ATPase [Post 93.5 0.31 6.6E-06 48.4 7.9 17 163-179 246-262 (491)
349 TIGR00959 ffh signal recogniti 93.5 0.89 1.9E-05 47.1 11.8 23 164-187 101-123 (428)
350 TIGR03499 FlhF flagellar biosy 93.5 0.16 3.4E-06 49.8 6.1 18 162-179 194-211 (282)
351 PHA03368 DNA packaging termina 93.5 0.57 1.2E-05 50.3 10.4 135 162-314 254-392 (738)
352 COG0470 HolB ATPase involved i 93.4 0.18 3.8E-06 50.7 6.6 28 162-190 23-51 (325)
353 KOG1133 Helicase of the DEAD s 93.4 0.09 2E-06 55.7 4.4 41 147-187 15-59 (821)
354 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.54 1.2E-05 44.5 9.5 51 161-218 19-69 (229)
355 TIGR00595 priA primosomal prot 93.4 0.34 7.5E-06 51.6 8.9 76 370-446 25-101 (505)
356 PRK07993 DNA polymerase III su 93.4 0.48 1E-05 47.6 9.4 41 148-189 3-50 (334)
357 PRK14965 DNA polymerase III su 93.4 0.47 1E-05 51.5 10.0 43 269-313 117-159 (576)
358 PRK13342 recombination factor 93.3 0.48 1E-05 49.4 9.8 17 163-179 37-53 (413)
359 PRK13851 type IV secretion sys 93.3 0.11 2.5E-06 52.0 4.9 45 158-209 158-202 (344)
360 cd03115 SRP The signal recogni 93.3 1.9 4E-05 38.7 12.5 52 271-322 82-134 (173)
361 COG0593 DnaA ATPase involved i 93.3 0.39 8.4E-06 48.9 8.6 47 271-317 175-223 (408)
362 KOG0744 AAA+-type ATPase [Post 93.3 0.4 8.7E-06 46.5 8.1 114 162-287 177-325 (423)
363 PRK14950 DNA polymerase III su 93.3 0.43 9.3E-06 52.0 9.6 17 269-285 118-134 (585)
364 PRK10436 hypothetical protein; 93.2 0.24 5.3E-06 51.8 7.3 39 149-188 203-243 (462)
365 PRK13341 recombination factor 93.2 0.47 1E-05 52.7 9.7 41 271-316 109-149 (725)
366 TIGR00643 recG ATP-dependent D 93.2 0.53 1.1E-05 51.9 10.2 77 369-445 283-364 (630)
367 KOG0732 AAA+-type ATPase conta 93.1 0.16 3.4E-06 57.2 6.0 63 251-315 345-417 (1080)
368 cd00984 DnaB_C DnaB helicase C 93.1 0.87 1.9E-05 43.5 10.6 39 161-204 12-50 (242)
369 PF01695 IstB_IS21: IstB-like 93.1 0.14 3E-06 46.3 4.7 48 157-211 42-89 (178)
370 cd01121 Sms Sms (bacterial rad 93.0 0.53 1.1E-05 47.9 9.2 51 162-219 82-132 (372)
371 PRK11823 DNA repair protein Ra 93.0 0.44 9.6E-06 49.9 8.9 51 162-219 80-130 (446)
372 PRK05896 DNA polymerase III su 93.0 0.24 5.2E-06 53.1 7.0 25 163-188 39-63 (605)
373 PRK14959 DNA polymerase III su 92.9 0.39 8.5E-06 51.8 8.4 17 164-180 40-56 (624)
374 PRK14955 DNA polymerase III su 92.8 0.48 1E-05 49.0 8.8 24 164-188 40-63 (397)
375 KOG0298 DEAD box-containing he 92.8 0.17 3.6E-06 57.4 5.5 98 367-469 1218-1316(1394)
376 TIGR02928 orc1/cdc6 family rep 92.7 0.68 1.5E-05 47.4 9.8 24 163-187 41-64 (365)
377 PRK10416 signal recognition pa 92.7 3.6 7.9E-05 41.0 14.4 53 270-322 195-254 (318)
378 cd01130 VirB11-like_ATPase Typ 92.7 0.24 5.3E-06 45.2 5.7 32 147-178 9-41 (186)
379 TIGR02525 plasmid_TraJ plasmid 92.6 0.28 6.1E-06 49.8 6.6 43 162-208 149-191 (372)
380 KOG2028 ATPase related to the 92.6 0.36 7.7E-06 47.5 6.7 49 163-217 163-211 (554)
381 PRK08451 DNA polymerase III su 92.5 1.2 2.6E-05 47.5 11.3 40 269-309 115-154 (535)
382 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.89 1.9E-05 43.9 9.7 37 162-204 36-72 (259)
383 TIGR03689 pup_AAA proteasome A 92.5 0.6 1.3E-05 49.4 8.9 17 162-178 216-232 (512)
384 PRK06090 DNA polymerase III su 92.4 0.72 1.6E-05 45.8 9.0 43 147-190 3-52 (319)
385 KOG1513 Nuclear helicase MOP-3 92.4 0.2 4.2E-06 53.9 5.1 76 412-487 849-936 (1300)
386 TIGR00580 mfd transcription-re 92.3 0.79 1.7E-05 52.4 10.2 77 369-445 499-580 (926)
387 PRK14954 DNA polymerase III su 92.2 0.72 1.6E-05 50.2 9.4 23 164-187 40-62 (620)
388 PRK13900 type IV secretion sys 92.2 0.4 8.8E-06 48.0 7.0 43 159-208 157-199 (332)
389 PHA00729 NTP-binding motif con 92.2 1.3 2.8E-05 41.4 9.8 75 248-323 60-139 (226)
390 KOG0060 Long-chain acyl-CoA tr 92.1 0.16 3.5E-06 53.0 4.0 63 251-319 570-632 (659)
391 PRK14948 DNA polymerase III su 92.1 0.63 1.4E-05 50.9 8.8 25 163-188 39-63 (620)
392 PRK07940 DNA polymerase III su 92.0 0.6 1.3E-05 47.9 8.2 47 269-317 115-161 (394)
393 PRK06067 flagellar accessory p 92.0 1.1 2.3E-05 42.6 9.5 51 162-219 25-75 (234)
394 PF02572 CobA_CobO_BtuR: ATP:c 92.0 1.1 2.3E-05 40.0 8.6 140 166-321 7-148 (172)
395 TIGR00678 holB DNA polymerase 91.9 1.8 3.8E-05 39.5 10.5 26 163-189 15-40 (188)
396 PRK14873 primosome assembly pr 91.7 0.56 1.2E-05 51.5 8.0 76 370-446 188-265 (665)
397 TIGR02538 type_IV_pilB type IV 91.7 0.43 9.3E-06 51.7 7.1 44 140-187 295-340 (564)
398 PRK00440 rfc replication facto 91.7 2.7 5.8E-05 42.0 12.5 38 271-309 102-139 (319)
399 cd01126 TraG_VirD4 The TraG/Tr 91.7 0.21 4.5E-06 51.6 4.5 56 164-231 1-56 (384)
400 COG1200 RecG RecG-like helicas 91.7 0.96 2.1E-05 48.5 9.3 79 368-446 309-392 (677)
401 TIGR02524 dot_icm_DotB Dot/Icm 91.6 0.35 7.5E-06 49.0 5.9 26 161-187 133-158 (358)
402 cd01129 PulE-GspE PulE/GspE Th 91.6 0.36 7.9E-06 46.7 5.8 38 149-187 65-104 (264)
403 COG1132 MdlB ABC-type multidru 91.6 0.67 1.5E-05 50.6 8.5 39 269-307 481-519 (567)
404 PF02534 T4SS-DNA_transf: Type 91.4 0.24 5.3E-06 52.6 4.9 58 163-232 45-102 (469)
405 PRK11034 clpA ATP-dependent Cl 91.4 2.3 4.9E-05 47.7 12.4 18 162-179 207-224 (758)
406 PF01443 Viral_helicase1: Vira 91.4 0.24 5.1E-06 47.1 4.3 20 165-185 1-20 (234)
407 COG2909 MalT ATP-dependent tra 91.3 0.76 1.7E-05 50.4 8.2 41 273-313 131-171 (894)
408 TIGR00767 rho transcription te 91.3 0.48 1.1E-05 48.1 6.4 27 160-187 166-192 (415)
409 TIGR02858 spore_III_AA stage I 91.3 1.9 4.1E-05 41.8 10.3 32 156-189 102-136 (270)
410 PRK13764 ATPase; Provisional 91.3 0.39 8.4E-06 51.7 6.0 27 161-188 256-282 (602)
411 PRK09087 hypothetical protein; 91.2 0.6 1.3E-05 44.0 6.7 39 274-314 90-128 (226)
412 CHL00176 ftsH cell division pr 91.2 0.91 2E-05 49.7 8.9 44 272-315 276-332 (638)
413 COG4626 Phage terminase-like p 91.1 0.81 1.8E-05 48.0 8.0 146 147-310 61-223 (546)
414 PF03237 Terminase_6: Terminas 91.1 2.6 5.7E-05 42.9 12.1 145 166-327 1-154 (384)
415 PRK06647 DNA polymerase III su 91.1 0.53 1.1E-05 50.8 6.9 17 269-285 117-133 (563)
416 PRK03992 proteasome-activating 91.0 0.91 2E-05 46.8 8.4 16 163-178 166-181 (389)
417 PRK10689 transcription-repair 91.0 1.4 3.1E-05 51.6 10.7 76 369-444 648-728 (1147)
418 COG2255 RuvB Holliday junction 90.9 0.47 1E-05 45.3 5.5 16 164-179 54-69 (332)
419 PRK14953 DNA polymerase III su 90.9 0.68 1.5E-05 49.0 7.5 17 269-285 117-133 (486)
420 PRK06904 replicative DNA helic 90.9 2.7 5.8E-05 44.4 11.9 116 161-285 220-348 (472)
421 PRK07133 DNA polymerase III su 90.9 0.44 9.6E-06 52.3 6.2 17 269-285 116-132 (725)
422 TIGR01243 CDC48 AAA family ATP 90.9 1.4 3.1E-05 49.6 10.4 18 161-178 211-228 (733)
423 KOG0344 ATP-dependent RNA heli 90.9 4.2 9E-05 42.8 12.6 97 171-281 366-466 (593)
424 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.9 0.95 2.1E-05 39.3 7.2 40 269-311 86-125 (144)
425 KOG0701 dsRNA-specific nucleas 90.8 0.17 3.8E-06 59.5 3.1 94 372-465 294-399 (1606)
426 PF10593 Z1: Z1 domain; Inter 90.8 0.89 1.9E-05 43.2 7.4 95 385-485 102-201 (239)
427 COG1219 ClpX ATP-dependent pro 90.8 0.15 3.2E-06 49.2 2.1 18 162-179 97-114 (408)
428 PF13555 AAA_29: P-loop contai 90.8 0.28 6.1E-06 35.3 3.0 26 162-189 23-48 (62)
429 COG0630 VirB11 Type IV secreto 90.8 0.62 1.3E-05 46.3 6.6 57 145-208 125-182 (312)
430 PRK13897 type IV secretion sys 90.7 0.34 7.4E-06 52.4 5.1 57 163-231 159-215 (606)
431 TIGR01243 CDC48 AAA family ATP 90.7 0.93 2E-05 51.1 8.7 45 271-315 546-601 (733)
432 KOG0741 AAA+-type ATPase [Post 90.6 2 4.2E-05 44.7 9.9 51 129-179 493-555 (744)
433 TIGR02639 ClpA ATP-dependent C 90.6 3.1 6.7E-05 46.9 12.7 18 162-179 203-220 (731)
434 TIGR02533 type_II_gspE general 90.6 0.41 8.9E-06 50.7 5.5 38 149-187 227-266 (486)
435 COG2109 BtuR ATP:corrinoid ade 90.6 1.5 3.2E-05 39.3 7.9 53 270-322 121-175 (198)
436 TIGR02868 CydC thiol reductant 90.6 0.92 2E-05 49.0 8.4 27 161-189 360-386 (529)
437 KOG0058 Peptide exporter, ABC 90.5 1.4 3.1E-05 47.6 9.3 42 269-311 620-661 (716)
438 KOG0742 AAA+-type ATPase [Post 90.5 0.53 1.2E-05 47.0 5.6 16 163-178 385-400 (630)
439 PRK06305 DNA polymerase III su 90.4 1.1 2.3E-05 47.2 8.2 25 163-188 40-64 (451)
440 PF06733 DEAD_2: DEAD_2; Inte 90.4 0.16 3.4E-06 45.9 1.9 45 241-285 114-159 (174)
441 COG4555 NatA ABC-type Na+ tran 90.3 0.94 2E-05 41.0 6.5 53 269-321 149-201 (245)
442 cd01393 recA_like RecA is a b 90.2 0.75 1.6E-05 43.4 6.5 44 162-206 19-63 (226)
443 cd01131 PilT Pilus retraction 90.2 0.37 8E-06 44.5 4.2 39 165-208 4-42 (198)
444 COG1222 RPT1 ATP-dependent 26S 90.1 3 6.5E-05 41.3 10.3 53 124-179 147-202 (406)
445 PF00437 T2SE: Type II/IV secr 89.9 0.34 7.3E-06 47.3 3.9 43 160-208 125-167 (270)
446 TIGR03819 heli_sec_ATPase heli 89.9 0.68 1.5E-05 46.6 6.2 63 137-208 154-217 (340)
447 PHA03372 DNA packaging termina 89.9 2.7 5.9E-05 44.8 10.5 132 162-314 202-339 (668)
448 PRK04841 transcriptional regul 89.8 3.3 7.2E-05 48.1 12.7 42 272-313 122-163 (903)
449 TIGR03600 phage_DnaB phage rep 89.7 3.1 6.7E-05 43.5 11.1 39 159-203 191-230 (421)
450 PRK07399 DNA polymerase III su 89.7 1.6 3.5E-05 43.4 8.6 27 163-190 27-53 (314)
451 PRK05973 replicative DNA helic 89.6 0.56 1.2E-05 44.3 5.0 55 158-219 60-114 (237)
452 COG1198 PriA Primosomal protei 89.6 0.81 1.7E-05 50.4 6.8 74 370-444 245-319 (730)
453 KOG0734 AAA+-type ATPase conta 89.6 2.1 4.5E-05 44.6 9.1 47 270-316 395-451 (752)
454 TIGR00763 lon ATP-dependent pr 89.4 1.7 3.7E-05 49.2 9.5 17 162-178 347-363 (775)
455 PRK14701 reverse gyrase; Provi 89.3 2.1 4.6E-05 52.0 10.5 61 369-429 121-187 (1638)
456 cd01128 rho_factor Transcripti 89.3 1.1 2.3E-05 42.9 6.7 20 159-178 13-32 (249)
457 PRK14971 DNA polymerase III su 89.3 1.4 3E-05 48.2 8.4 42 269-312 119-160 (614)
458 PF10412 TrwB_AAD_bind: Type I 89.2 0.35 7.6E-06 49.8 3.6 48 158-211 11-58 (386)
459 PHA00012 I assembly protein 89.1 6.3 0.00014 38.8 11.6 52 269-321 79-136 (361)
460 PRK05564 DNA polymerase III su 88.9 2.2 4.8E-05 42.5 9.0 41 269-311 91-131 (313)
461 COG0513 SrmB Superfamily II DN 88.9 1.9 4.1E-05 46.2 8.9 68 373-444 102-180 (513)
462 KOG2004 Mitochondrial ATP-depe 88.7 4.7 0.0001 43.7 11.2 33 249-285 487-519 (906)
463 COG1074 RecB ATP-dependent exo 88.6 0.65 1.4E-05 54.8 5.6 57 161-218 15-71 (1139)
464 COG0466 Lon ATP-dependent Lon 88.5 1.5 3.3E-05 47.3 7.7 34 250-287 400-433 (782)
465 TIGR02397 dnaX_nterm DNA polym 88.5 4 8.8E-05 41.4 10.8 24 164-188 38-61 (355)
466 KOG0347 RNA helicase [RNA proc 88.5 1.5 3.2E-05 45.7 7.2 53 372-428 265-321 (731)
467 COG3267 ExeA Type II secretory 88.4 2.2 4.8E-05 40.2 7.7 58 157-219 45-103 (269)
468 PRK08058 DNA polymerase III su 88.2 5.4 0.00012 40.0 11.3 41 269-311 108-148 (329)
469 cd03239 ABC_SMC_head The struc 88.1 0.6 1.3E-05 42.2 4.0 41 270-310 115-156 (178)
470 PF12846 AAA_10: AAA-like doma 88.1 0.71 1.5E-05 45.6 4.9 43 162-210 1-43 (304)
471 PRK14970 DNA polymerase III su 88.1 1.9 4.1E-05 44.2 8.0 16 163-178 40-55 (367)
472 cd03247 ABCC_cytochrome_bd The 88.1 1.9 4.1E-05 38.9 7.3 42 269-311 114-155 (178)
473 TIGR02788 VirB11 P-type DNA tr 88.1 0.71 1.5E-05 45.9 4.8 19 160-178 142-160 (308)
474 TIGR01420 pilT_fam pilus retra 88.0 0.66 1.4E-05 46.9 4.6 42 162-208 122-163 (343)
475 KOG0331 ATP-dependent RNA heli 87.9 11 0.00025 39.7 13.4 90 370-463 165-272 (519)
476 KOG0729 26S proteasome regulat 87.9 4.7 0.0001 38.1 9.5 18 162-179 211-228 (435)
477 PRK13850 type IV secretion sys 87.9 0.7 1.5E-05 50.7 4.9 48 163-218 140-187 (670)
478 PRK09354 recA recombinase A; P 87.8 2.6 5.5E-05 42.3 8.5 43 162-210 60-102 (349)
479 COG0541 Ffh Signal recognition 87.8 6 0.00013 40.4 10.9 130 165-323 103-235 (451)
480 KOG0730 AAA+-type ATPase [Post 87.6 2.7 5.8E-05 45.0 8.7 46 273-318 529-584 (693)
481 PRK08840 replicative DNA helic 87.5 5.9 0.00013 41.8 11.4 117 159-284 214-342 (464)
482 KOG1807 Helicases [Replication 87.5 1 2.2E-05 48.7 5.5 70 147-217 378-448 (1025)
483 COG0210 UvrD Superfamily I DNA 87.5 1.2 2.7E-05 49.5 6.8 71 147-221 2-72 (655)
484 PRK13695 putative NTPase; Prov 87.4 5 0.00011 36.0 9.6 23 164-187 2-24 (174)
485 TIGR02640 gas_vesic_GvpN gas v 87.4 0.52 1.1E-05 45.7 3.3 27 153-179 12-38 (262)
486 TIGR02655 circ_KaiC circadian 87.4 2.6 5.7E-05 44.8 8.9 59 154-219 250-313 (484)
487 PRK07414 cob(I)yrinic acid a,c 87.3 2.1 4.5E-05 38.3 6.7 52 269-320 113-166 (178)
488 PF03969 AFG1_ATPase: AFG1-lik 87.3 7.3 0.00016 39.6 11.5 110 162-316 62-172 (362)
489 KOG0339 ATP-dependent RNA heli 87.3 6.7 0.00015 40.6 10.9 69 372-444 298-376 (731)
490 PRK04537 ATP-dependent RNA hel 87.0 4.3 9.3E-05 44.2 10.4 74 196-280 257-334 (572)
491 KOG0338 ATP-dependent RNA heli 86.9 3.6 7.7E-05 42.5 8.8 73 368-444 250-333 (691)
492 cd00268 DEADc DEAD-box helicas 86.8 19 0.0004 33.0 13.4 73 369-445 68-150 (203)
493 COG1197 Mfd Transcription-repa 86.8 3.9 8.4E-05 46.9 9.9 78 367-444 640-722 (1139)
494 TIGR02203 MsbA_lipidA lipid A 86.7 2.3 4.9E-05 46.6 8.2 41 269-309 485-525 (571)
495 cd03246 ABCC_Protease_Secretio 86.7 1.4 3.1E-05 39.5 5.6 43 269-311 112-154 (173)
496 cd03228 ABCC_MRP_Like The MRP 86.6 1.7 3.7E-05 38.9 6.0 42 269-311 112-153 (171)
497 COG0542 clpA ATP-binding subun 86.6 7.1 0.00015 43.3 11.5 39 164-209 523-561 (786)
498 cd01127 TrwB Bacterial conjuga 86.5 0.54 1.2E-05 48.9 3.0 49 156-210 36-84 (410)
499 KOG0652 26S proteasome regulat 86.5 3.3 7.2E-05 38.9 7.7 45 271-315 264-321 (424)
500 PRK04328 hypothetical protein; 86.5 0.9 2E-05 43.6 4.4 55 159-220 20-74 (249)
No 1
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-96 Score=708.04 Aligned_cols=462 Identities=62% Similarity=0.962 Sum_probs=446.8
Q ss_pred CCcccCCCCCCCcccC---CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHH
Q 007879 110 TKSFFAPADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186 (586)
Q Consensus 110 ~~~~~~~~~~~~~~~~---~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~ 186 (586)
...|+++.++...... +|.+++|+.+++++|..+||..|||+|..+||.++.|+|++.||.||||||.+|++|+|++
T Consensus 163 ~~~Ffa~~dg~s~~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLER 242 (691)
T KOG0338|consen 163 KKFFFATEDGVSADTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILER 242 (691)
T ss_pred ccccccccchhhhhhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHH
Confidence 4556777776655544 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC
Q 007879 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266 (586)
Q Consensus 187 l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~ 266 (586)
+++++.+....+||||||||+||.|++.+.++++.|+.+.++++.||.+...+...++..|||||+|||||++||++.++
T Consensus 243 LlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 243 LLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred HhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEE
Q 007879 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346 (586)
Q Consensus 267 ~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (586)
+.++++.++|+||||+|++.+|...+.+|++.||+++|+++|||||+..+.+++...+++|+.+.+++....+..+.|.|
T Consensus 323 f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEF 402 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEF 402 (691)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEe
Q 007879 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (586)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLva 426 (586)
++++...+..+...+..++...+..++|||+.|++.|++|.-+|...|++++.+||.++|.+|...++.|++++++||||
T Consensus 403 iRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLia 482 (691)
T KOG0338|consen 403 IRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIA 482 (691)
T ss_pred heeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH---hcCccccccchhhhH
Q 007879 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR---AGSKLKSRIVAEQSI 503 (586)
Q Consensus 427 T~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~---~~~~~~~~~~~~~~~ 503 (586)
|++++|||||++|.+||||.+|.+...|+||+||++|+|+.|.+++|+...|+.+++.|.+. .+.++..++++...+
T Consensus 483 TDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~I 562 (691)
T KOG0338|consen 483 TDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVI 562 (691)
T ss_pred echhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHhhcCCCccccccHHHHHHHhhh
Q 007879 504 TKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKA 571 (586)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (586)
.+|.+.++++++.++.++.++++++.++.+++.+.+++|++++.+++.++|+|.||++.++++..+.+
T Consensus 563 ek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g~ei~arprRtWFqte~~kk~~K~a 630 (691)
T KOG0338|consen 563 EKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHGDEIYARPRRTWFQTEKDKKASKRA 630 (691)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccccCccchhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877543
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-76 Score=555.98 Aligned_cols=380 Identities=41% Similarity=0.657 Sum_probs=359.8
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
...+|.+|++.+.++++|...|+..||++|.++||.++.|+|+|+.|+||||||.+|+||++++++..++. +.+|||
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~---~~~lVL 135 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKL---FFALVL 135 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC---ceEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999999987653 689999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+|||+||.|+.+.+..++...|++++++.||.+...+...+.+.|||+|+|||+|.+++.+.+.+.+..++++|+||||+
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
++++.|...+..|++.+|..+|+++||||++..+..+....+.+|..+.+.......+.+.|.+.+++ ...+...|.
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~---~k~K~~yLV 292 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVP---GKDKDTYLV 292 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecc---ccccchhHH
Confidence 99999999999999999999999999999999999999999999999999888888888999998885 456677888
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
.+++...+..+||||++...+.+++-+|+..|+.+..+||.|++..|.-.++.|++|.++||||||+++||+|||+|++|
T Consensus 293 ~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 293 YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccchhhhHHHHHH
Q 007879 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSK 508 (586)
Q Consensus 443 I~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 508 (586)
||||.|.+..+|+||+||+||+|++|.++.|++.+|...+.+|+..++.++....++.+.+..+.+
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~e 438 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNE 438 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887777665544443
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-69 Score=542.52 Aligned_cols=360 Identities=39% Similarity=0.577 Sum_probs=324.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcC---CCCCCCeEEEEE
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLIL 202 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~---~~~~~~~~vlil 202 (586)
.|++++|++.+..+++..||..|||+|.+.||.++.|+|++..|.||||||++|++|++.++... .....+|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999862 223457899999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+|||+||.|+...+..++....+++.+++||.+...+...+.++.+|+|+|||||++++..+ .+.|+.+.++|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g-~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG-SLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC-CccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999886 68899999999999999
Q ss_pred ccCCCcHHHHHHHHHHC-CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCC--CCCCCceEEEEEEecchhhhHHH
Q 007879 283 LLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA--KRPSTLTEEVVRIRRMREVNQEA 359 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 359 (586)
|+++||..++..|+..+ ++.+|++++|||+|..+..+...++.+|+.+.+.... .....+.|....+.. ..+..
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~---~~K~~ 327 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE---TAKLR 327 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH---HHHHH
Confidence 99999999999999999 5566899999999999999999999999988876432 334455665555543 33333
Q ss_pred HHHHHhh---ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 360 VLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 360 ~l~~~~~---~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
.+..++. ....+++||||.|+..|+.|...|...++++..|||+.+|.+|..+++.|++|++.|||||++|+|||||
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi 407 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV 407 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCC
Confidence 4444333 4457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHh
Q 007879 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 437 ~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (586)
|+|++|||||+|.++.+|+||+|||||+|+.|.+++|++..+......+.+.+
T Consensus 408 ~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 408 PDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred ccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777666543
No 4
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-67 Score=489.23 Aligned_cols=378 Identities=41% Similarity=0.609 Sum_probs=339.0
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
....|+.|||++++.+.|+.+|+..|||+|+.|||.|+.|+|+|.+|.||||||.+|.+|+++++...+. +.-+||+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~---giFalvl 81 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY---GIFALVL 81 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC---cceEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999977655 4469999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC---CcCccCceEEEEeC
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDE 279 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~---~~~l~~~~~lViDE 279 (586)
+|||+||.|+.+.|..+++..++++++++||.+.-.+...+..++||+|+|||+|.+++..+. .+.+.+++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 999999999999999999999999999999999999999999999999999999999998763 34578999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCC--CeEEeeCCCCCCCCCceEEEEEEecchhhhH
Q 007879 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (586)
Q Consensus 280 ah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (586)
||++++..|...+..+...+|..+|+++||||++..+..+....... ...+...........+.+.++.++ ...+
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~---~~vk 238 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS---IDVK 238 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc---hhhh
Confidence 99999999999999999999999999999999999988877665554 344445555566677888777764 3445
Q ss_pred HHHHHHHhh---ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccC
Q 007879 358 EAVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (586)
Q Consensus 358 ~~~l~~~~~---~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 434 (586)
..++..++. ....+.++||+++...|+.|+..|....+.+..+|+.|+|.+|...+.+|+++..+|||||++++||+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 555555554 22468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccchhhhHHHH
Q 007879 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKW 506 (586)
Q Consensus 435 di~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 506 (586)
|||.|.+|||||.|.+|..|+||+||++|+|+.|.+++|++..|...+..|++.+|.++.+..........+
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~ 390 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELY 390 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchhhhee
Confidence 999999999999999999999999999999999999999999999999999999999998866555444333
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-67 Score=549.26 Aligned_cols=366 Identities=43% Similarity=0.664 Sum_probs=337.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 125 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
.+|++++|++.+++++..+||..|||+|..+||.++.|+|+++.|+||||||++|++|+++.+.........+ +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECC
Confidence 6799999999999999999999999999999999999999999999999999999999999976421111111 999999
Q ss_pred cHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
||+||.|+++.+..++.+. ++++.+++||.+...+...+..+++|||+|||||++++... .+.++.+.++|+||||+|
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRM 186 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhh
Confidence 9999999999999999998 79999999999999999889889999999999999999887 788999999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCC--CCCCceEEEEEEecchhhhHHHHH
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREVNQEAVL 361 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 361 (586)
+++||...+..++..+|..+|+++||||++..+..+.+.++.+|..+.+..... ....+.|.++.+.... .+...|
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L 264 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELL 264 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HHHHHH
Confidence 999999999999999999999999999999999999999999998888774444 6678888888875432 577888
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccE
Q 007879 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (586)
Q Consensus 362 ~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 441 (586)
..++......++||||+|+..++.|...|...|+++..|||++++.+|.+++..|++|+.+||||||+++||||||+|.+
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 88888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccC-cHHHHHHHHHHhcCccc
Q 007879 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLK 494 (586)
Q Consensus 442 VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-d~~~~~~i~~~~~~~~~ 494 (586)
|||||+|.++..|+||+|||||+|..|.+++|+++. +...+..+.+..+..+.
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999986 89999999988766644
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-67 Score=470.16 Aligned_cols=371 Identities=32% Similarity=0.521 Sum_probs=345.5
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEE
Q 007879 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (586)
Q Consensus 122 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vli 201 (586)
....+|++++|++++++++...||.+|+.+|+.|+++++.|+|+++++..|+|||.+|.+.+++.+.-+. ...++||
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~---r~tQ~li 100 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV---RETQALI 100 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc---ceeeEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999988765433 2468999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcc
Q 007879 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (586)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 281 (586)
|.|||+||.|+.+.+..++.+.++.+..+.||.+.....+.+..+.+++.+|||+++++++.. .+.-+.++++|+||||
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKMLVLDEAD 179 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeEEEeccHH
Confidence 999999999999999999999999999999999998888889999999999999999999876 5778899999999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHH
Q 007879 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (586)
Q Consensus 282 ~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (586)
.|++.||..++..+.+.+|+..|++++|||+|.++.+....++.+|+.+-+.........+.++++.+.. +.-+...|
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~--EewKfdtL 257 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEK--EEWKFDTL 257 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeech--hhhhHhHH
Confidence 9999999999999999999999999999999999999999999999999998887777789999888753 34467778
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccE
Q 007879 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (586)
Q Consensus 362 ~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 441 (586)
+.+.....-...+|||+|+..+++|.+.+...++.+..+||+|++++|..++..|++|+.+|||+|++-+||+|+|.|.+
T Consensus 258 cdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 258 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 88887777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccc
Q 007879 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (586)
Q Consensus 442 VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~ 498 (586)
|||||+|.+...|+||+||.||.|++|.++.|+...|...++.|++.++..+.+...
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999999999999999998887766443
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.1e-66 Score=497.63 Aligned_cols=378 Identities=34% Similarity=0.517 Sum_probs=335.9
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-CCCCeEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLI 201 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vli 201 (586)
....|.++.|++..+++++.+||.++|++|+..++.++.|+|+++.|.||+|||++|++|+++.+++... ..++..+||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 3556889999999999999999999999999999999999999999999999999999999999987653 235678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCc
Q 007879 202 LTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (586)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 280 (586)
+||||+||.|++.+++.+..+. ++.+.++.||.+.......+..++.|+|+|||||++|+.+...+...+++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999998 999999999999988888888899999999999999999988888888999999999
Q ss_pred ccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCC-CeEEeeCCCCC--CCCCceEEEEEEecchhhhH
Q 007879 281 DRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAK--RPSTLTEEVVRIRRMREVNQ 357 (586)
Q Consensus 281 h~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 357 (586)
|++++.||...+.+|++.+|+.+|+++||||.++.+..+.+..+.. |+.+.+..... ....+.|-++..+.. ..
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~---~~ 316 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD---SR 316 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc---ch
Confidence 9999999999999999999999999999999999999999888876 77777655443 334566666655432 33
Q ss_pred HHHHHHHhhccCC-ceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 358 EAVLLSLCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 358 ~~~l~~~~~~~~~-~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
...+..++++... .++||||+|...+..++.+|+...++|..+||+.+|..|..+...|++.+..|||||++++||+|+
T Consensus 317 f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 5566666665555 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccchhhhHHHH
Q 007879 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKW 506 (586)
Q Consensus 437 ~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 506 (586)
|+|+.||+||+|.++.+|+||+|||||.|+.|.+++++.+++..+++++.+ ..+.+-.+++......
T Consensus 397 P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~---lpl~~~e~~~~~~~~v 463 (543)
T KOG0342|consen 397 PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK---LPLEEFEFPPLKPEDV 463 (543)
T ss_pred CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh---CCCcccCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999983 3444444444433333
No 8
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-65 Score=486.31 Aligned_cols=362 Identities=39% Similarity=0.628 Sum_probs=325.4
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCe--EEE
Q 007879 125 NSFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI--RVL 200 (586)
Q Consensus 125 ~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~--~vl 200 (586)
.+|++++ |++++++++..+||..+||+|..+||.++.++|+++.++||||||++|++|++..+..+....++. .+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 559999999999999999999999999999999999999999999999999999997776655444 799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHh-cCCcCccCceEEEE
Q 007879 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLIL 277 (586)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~-~~~~~l~~~~~lVi 277 (586)
||+|||+||.|+.+++..+... .++.+.+++||.+.......+. .++.|+|+|||||.+++.+ ...+++.+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999998876 7899999999988887766665 4688999999999999987 34456779999999
Q ss_pred eCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCC--CCCCceEEEEEEecchhh
Q 007879 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREV 355 (586)
Q Consensus 278 DEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 355 (586)
||||+++++||...+..|+..+|+.+++-+||||.+..+..+....+.+|+.+.+..... .|..+...+..+ ...
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~---~a~ 240 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC---EAD 240 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe---cHH
Confidence 999999999999999999999999999999999999999999999999999998877665 666677776666 345
Q ss_pred hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccccc
Q 007879 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (586)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 433 (586)
.+...+..++......++|||.+|...++.....|... ...+..+||.|++..|..++..|.+....+|+|||+++||
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 67778888888888899999999999999999888765 6789999999999999999999999888999999999999
Q ss_pred CCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHh
Q 007879 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 434 ldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (586)
||||+|++||+||+|.++..|+||+|||||+|+.|.+++|+.+.+..+...+.-+-
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~ 376 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKG 376 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998888877766543
No 9
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.8e-65 Score=493.78 Aligned_cols=366 Identities=37% Similarity=0.576 Sum_probs=338.4
Q ss_pred CCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC------
Q 007879 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------ 192 (586)
Q Consensus 119 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~------ 192 (586)
..+.+..+|++.+++.++++.+...||..|+|+|..+||..++++|+|..+.||||||++|++|++..+...++
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 33567889999999999999999999999999999999999999999999999999999999999998877652
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 193 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 193 ~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
...+|.++|++|||+||.|+.+.-.++++..++++..++||.+..++.-.+..+|+|+|+||++|++.|.+. .+-++..
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qc 397 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQC 397 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccC
Confidence 345789999999999999999999999999999999999999999988889999999999999999999886 5668999
Q ss_pred eEEEEeCcccccCCCcHHHHHHHHHHCCC-------------------------CCcEEEEeecCchhHHHHHHHhcCCC
Q 007879 273 AVLILDEADRLLELGFSAEIHELVRLCPK-------------------------RRQTMLFSATLTEDVDELIKLSLTKP 327 (586)
Q Consensus 273 ~~lViDEah~l~~~~~~~~i~~i~~~~~~-------------------------~~q~i~~SAT~~~~~~~~~~~~~~~~ 327 (586)
.++|+||||+|+++||.+.+..++..+|. .+|+++||||+++.+..+++.++.+|
T Consensus 398 tyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~p 477 (673)
T KOG0333|consen 398 TYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRP 477 (673)
T ss_pred ceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCC
Confidence 99999999999999999999999988872 27999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHH
Q 007879 328 LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQA 407 (586)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 407 (586)
+.+.........+.+.|.+..+. ...+...|..++......++|||+|+++.|+.|++.|...|+++..|||+-+++
T Consensus 478 v~vtig~~gk~~~rveQ~v~m~~---ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qe 554 (673)
T KOG0333|consen 478 VVVTIGSAGKPTPRVEQKVEMVS---EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQE 554 (673)
T ss_pred eEEEeccCCCCccchheEEEEec---chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHH
Confidence 99999888888888888877764 445577788888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 408 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
+|..+++.|++|..+|||||++++||||||+|.+|||||++.+..+|+||+|||||+|+.|++++|+++.|...+..|..
T Consensus 555 QRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 555 QRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQ 634 (673)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999776666554
Q ss_pred H
Q 007879 488 R 488 (586)
Q Consensus 488 ~ 488 (586)
.
T Consensus 635 ~ 635 (673)
T KOG0333|consen 635 A 635 (673)
T ss_pred H
Confidence 3
No 10
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-64 Score=491.39 Aligned_cols=384 Identities=35% Similarity=0.565 Sum_probs=342.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-CCCCeEEEEE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLIL 202 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vlil 202 (586)
...|++|+|+...+++|+..+|..+|.+|+.+||.++.|+|+|..|.||||||++|++|+|++++...= ...+.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 457999999999999999999999999999999999999999999999999999999999999987542 2345579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
.|||+||.|+++++.+.+.+..+.++++.||.........+ +..+|+|||||||+.||.....+...++.++|+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999998866544433 45799999999999999999899999999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeC--CCCCCCCCceEEEEEEecchhhhHHHH
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD--PSAKRPSTLTEEVVRIRRMREVNQEAV 360 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (586)
|+++||...+..|+..+|+.+|+++||||.+..+..++++.+.+|..+.+- .....|..+.|.++.++ ...+..+
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~---l~~Ki~~ 303 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP---LEDKIDM 303 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe---hhhHHHH
Confidence 999999999999999999999999999999999999999999999888765 33567788999988875 4567888
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCC
Q 007879 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (586)
Q Consensus 361 l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 438 (586)
|..++......++|||+.|.+.+..++..|... |+++..|||.|+|..|..++..|...+.-||+||++++||||+|.
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999888999999999999999999999865 899999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCc-HHHHHHHHHHhcCccccccchhhhHHHHHHHHHH
Q 007879 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQ 512 (586)
Q Consensus 439 v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (586)
|++||++|.|.++.+|+||+||++|.+..|.+++++++++ ..++..|++.. ..+....+....+......++.
T Consensus 384 VdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k~~~i~~~l~~ 457 (758)
T KOG0343|consen 384 VDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEKLTSIRNKLEA 457 (758)
T ss_pred cceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999998 66667776653 5555555555444444444443
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-63 Score=513.21 Aligned_cols=370 Identities=37% Similarity=0.568 Sum_probs=328.7
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC----CCCCeE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIR 198 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~ 198 (586)
...+|++++|++.++++|..+||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 3468999999999999999999999999999999999999999999999999999999999999875432 134578
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
+|||+||++||.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEe
Confidence 999999999999999999999999999999999999888888888888999999999999998764 5778999999999
Q ss_pred CcccccCCCcHHHHHHHHHHCCC--CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhh
Q 007879 279 EADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (586)
|||++++++|...+..++..++. .+++++||||++..+..+....+.+|..+.+.........+.+.+... ....
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~~ 241 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNEE 241 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHHH
Confidence 99999999999999999998874 567899999999999999988999888877655444444444443322 2334
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 357 ~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
+...+..++......++||||+++..|+.+...|...++++..+||++++.+|..+++.|++|+++|||||++++||||+
T Consensus 242 k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 242 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 55566666666667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccc
Q 007879 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 437 ~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~ 496 (586)
|+|++||+||+|.++..|+||+||+||.|+.|.+++|+++.+...+..+.+.++..+...
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999999999999999999999999999999988777766543
No 12
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-63 Score=472.51 Aligned_cols=421 Identities=34% Similarity=0.521 Sum_probs=355.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC---CCCCeEEEE
Q 007879 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLI 201 (586)
Q Consensus 125 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~---~~~~~~vli 201 (586)
.+|++++|++.+++++...||.+||-+|..+||.++.|+|+++.|.||||||.+|+||+++.++..+. ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999999997653 345788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCC--ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 202 LTPTRELAVQVHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
|+||++||.|++.++.++..+++ +++.-+....+.......+...|+|+|+||++++.++..+....+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999988765 5666666677777777888889999999999999999887556789999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCC-CCCCCceEEEEEEecchhhhHH
Q 007879 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQE 358 (586)
Q Consensus 280 ah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 358 (586)
||.++..||...+..+...+|+..|.++||||++.++..+-.++|++|+.+...... ..+..+.|+.+.+. +.++.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs---e~DKf 255 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS---EEDKF 255 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec---cchhH
Confidence 999999999999999999999999999999999999999999999999998775544 34567788877774 45566
Q ss_pred HHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecC---------
Q 007879 359 AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD--------- 428 (586)
Q Consensus 359 ~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~--------- 428 (586)
..+..+++ ..-.+++|||+|+...|.+|.-+|...|++.++++|.|+...|..++++|+.|-++++|||+
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 55555554 45578999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------cccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHH
Q 007879 429 --------------------------VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (586)
Q Consensus 429 --------------------------~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~ 482 (586)
-.+||||+.+|.+|||||+|.++..|+||+|||+|++++|.+++|+.+.+..-.
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~ 415 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGK 415 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhh
Confidence 136999999999999999999999999999999999999999999999876633
Q ss_pred HHHHHHhcC---ccccccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007879 483 KAIAKRAGS---KLKSRIVAE--QSITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKE 548 (586)
Q Consensus 483 ~~i~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (586)
..++..... .....++.. -..+.......+.++.++......-.+.+++..+.++...|++..+..
T Consensus 416 ~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~eD~~ravTkvAvreaR~kEikqEll~SeKLK~~Fe 486 (569)
T KOG0346|consen 416 ESLESILKDENRQEGRQILQPYQFRMEEVESFRYRAEDALRAVTKVAVREARLKEIKQELLNSEKLKAFFE 486 (569)
T ss_pred hHHHHHHhhHHhhcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 333322211 111111111 112223333445666777777777778888888888888888777755
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-65 Score=463.50 Aligned_cols=367 Identities=33% Similarity=0.533 Sum_probs=338.8
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEE
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vl 200 (586)
...-+.|+++.|.+.++..+...||.+|+|+|.++||.++.|+|+++.|..|+|||.+|++|+++.+..... ..+++
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~---~IQ~~ 157 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKN---VIQAI 157 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcccc---ceeEE
Confidence 345578999999999999999999999999999999999999999999999999999999999998765433 56899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCc
Q 007879 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (586)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 280 (586)
|++|||+||.|+.+.+.++++..++.+.+.+||++.....-.+....+++|+||||++++...+ -..+++..++|+|||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG-VADLSDCVILVMDEA 236 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc-cccchhceEEEechh
Confidence 9999999999999999999999999999999999988888778888999999999999999876 456899999999999
Q ss_pred ccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHH
Q 007879 281 DRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360 (586)
Q Consensus 281 h~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (586)
|.+++..|...+.+++..+|+.+|++++|||.|-.+..++..++.+|..++.-.+. ....+.|++..+ .+..+...
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV---~e~qKvhC 312 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFV---EERQKVHC 312 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hhcchhhheeee---chhhhhhh
Confidence 99999999999999999999999999999999999999999999999998875443 344677777666 34566667
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCcc
Q 007879 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (586)
Q Consensus 361 l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 440 (586)
|..++.+..-...||||||...++.|++.....|++|..+|+.|-++.|.+++..|++|.++.||||+.+.||||++.|+
T Consensus 313 LntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavN 392 (459)
T KOG0326|consen 313 LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVN 392 (459)
T ss_pred HHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceee
Confidence 77777777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 441 ~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
+|||||.|.++.+|+||+||.||+|..|.++.+++-.|+..+.+|+..+|.+++.
T Consensus 393 vVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 393 VVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred EEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999999998764
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-61 Score=515.73 Aligned_cols=370 Identities=38% Similarity=0.621 Sum_probs=332.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.+++|++.++++|..+||..|+|+|.++||.++.|+|+|++||||||||++|++|+++.+.... ..+++|||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~---~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL---KAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc---CCCeEEEEe
Confidence 34699999999999999999999999999999999999999999999999999999999999875432 346899999
Q ss_pred CcHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 204 PTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
||++||.|+++.+..+.... ++.+..++|+.+...+...+..+++|+|+||++|++++... .+.++++++|||||||+
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADE 160 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHHH
Confidence 99999999999999887654 78999999999988888888889999999999999999765 57789999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
|++++|...+..++..+|..+|+++||||+++.+..+...++.+|..+.+.........+.+.++.+. ...+...+.
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~---~~~k~~~L~ 237 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW---GMRKNEALV 237 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec---hhhHHHHHH
Confidence 99999999999999999999999999999999999999999999888776655444455666655543 234555666
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
.++......++||||+|+..+..++..|...++.+..+||.|++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 238 ~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 66666666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccchh
Q 007879 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500 (586)
Q Consensus 443 I~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~~~ 500 (586)
||||+|.++..|+||+|||||+|+.|.+++|+.+.+...++.|.+.++..+....++.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999999999999999999999999999999999999999998888876654443
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.7e-62 Score=514.56 Aligned_cols=367 Identities=35% Similarity=0.528 Sum_probs=321.2
Q ss_pred CCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC--CCCC
Q 007879 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPA 196 (586)
Q Consensus 119 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~--~~~~ 196 (586)
..+....+|.++++++.++++|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++.++..... ...+
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~g 203 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDG 203 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCC
Confidence 34556789999999999999999999999999999999999999999999999999999999999998875432 2246
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
+.+|||+|||+||.|+.+.+..++...++++.+++|+.....+...+..+++|+|+||++|++++... ...+.++++||
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lV 282 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLV 282 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEE
Confidence 78999999999999999999999988899999999999988888888899999999999999999875 46789999999
Q ss_pred EeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcC-CCeEEeeCCCC-CCCCCceEEEEEEecchh
Q 007879 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT-KPLRLSADPSA-KRPSTLTEEVVRIRRMRE 354 (586)
Q Consensus 277 iDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 354 (586)
|||||+|++++|...+..++..+++.+|+++||||++..+..+...++. .++.+.+.... .....+.+.+..+..
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~--- 359 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE--- 359 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec---
Confidence 9999999999999999999999999999999999999999988887775 46666554332 223345555544432
Q ss_pred hhHHHHHHHHhhcc--CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 007879 355 VNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (586)
Q Consensus 355 ~~~~~~l~~~~~~~--~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 432 (586)
..+...+..++... ...++||||+++..|+.+...|...++.+..+||++++.+|..+++.|++|+.+|||||++++|
T Consensus 360 ~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~r 439 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASR 439 (545)
T ss_pred hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhc
Confidence 33444444444432 4679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHh
Q 007879 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 433 Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (586)
|||||+|++||+||+|.++..|+||+||+||+|+.|.|++|+++.+....+.+.+.+
T Consensus 440 GIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 440 GLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888777766543
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.7e-62 Score=507.72 Aligned_cols=368 Identities=38% Similarity=0.616 Sum_probs=328.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC---CCCCeEEEEE
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLIL 202 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~---~~~~~~vlil 202 (586)
+|++++|++.++++|..+||..||++|.++||.++.|+|+|+++|||||||++|++|+++.+..... ...++++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999875432 2234589999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+||++||.|+.+.+..+....++.+..++|+.+...+...+...++|+|+||++|++++... .+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHH
Confidence 99999999999999999988899999999999988888888889999999999999988764 56789999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
+++++|...+..++..++..+|+++||||+++.+..+....+.+|..+.+.........+.+.+..+. ...+...+.
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~ 237 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD---KKRKRELLS 237 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC---HHHHHHHHH
Confidence 99999999999999999999999999999999999999889988887776544444445555554432 233445556
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
.++......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 66666666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccccc
Q 007879 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (586)
Q Consensus 443 I~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~ 497 (586)
|+|++|.++..|+||+||+||+|..|.+++|+...+...++.+.+.++.++....
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~ 372 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIA 372 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccc
Confidence 9999999999999999999999999999999999999999999988877765433
No 17
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-63 Score=484.46 Aligned_cols=370 Identities=39% Similarity=0.591 Sum_probs=311.9
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhhhhhHHHHhcCCC-------
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK------- 192 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~------- 192 (586)
....+.|..|+|+..++++|..+||..||++|...+|.+..| .|++..|.||||||++|.||+++.+.....
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 345677999999999999999999999999999999999999 799999999999999999999997665332
Q ss_pred -CCCCe--EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC--c
Q 007879 193 -RIPAI--RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS--V 267 (586)
Q Consensus 193 -~~~~~--~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~--~ 267 (586)
...++ -.||++|||+||.|+.+-+..++.++++++..++||.....+.+.++..++|||+|||||+.++..... -
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 11233 499999999999999999999999999999999999999999999999999999999999999876533 2
Q ss_pred CccCceEEEEeCcccccCCCcHHHHHHHHHHCC-----CCCcEEEEeecCchh---------------------HHHHHH
Q 007879 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCP-----KRRQTMLFSATLTED---------------------VDELIK 321 (586)
Q Consensus 268 ~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~-----~~~q~i~~SAT~~~~---------------------~~~~~~ 321 (586)
.+..+.++|+||||+|+..||...+..+++.+. ..+|+++||||++-. +..++.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 478899999999999999999999999988775 468999999999622 122222
Q ss_pred H--hcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEE
Q 007879 322 L--SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (586)
Q Consensus 322 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~ 399 (586)
. +..+|..+...+.......+....+.++ ...+...+..+ -..+++++|||||++..+.+|.-+|+..++....
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~---~~eKD~ylyYf-l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECP---PLEKDLYLYYF-LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCC---ccccceeEEEE-EeecCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 1 2234555555544444444444444432 12222233333 3446899999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 400 l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
||+.|.|.+|.+.+++|++....|||||++|+||||||+|.|||||-.|.+...|+||.|||+|++..|.+++|+.+.+.
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccc
Q 007879 480 SLLKAIAKRAGSKLK 494 (586)
Q Consensus 480 ~~~~~i~~~~~~~~~ 494 (586)
..++.|.+.+.....
T Consensus 573 ~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKED 587 (731)
T ss_pred HHHHHHHHHHhhccC
Confidence 999999887765433
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-61 Score=515.09 Aligned_cols=372 Identities=37% Similarity=0.571 Sum_probs=329.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC----CCCCeEE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRV 199 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~v 199 (586)
..+|++++|++.++++|..+||..|||+|.++||.++.|+|+++++|||||||++|++|+++++..... ....+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 347999999999999999999999999999999999999999999999999999999999999875321 1224689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 200 lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|++++.....+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999988999999999999988888888888999999999999999876557788999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCC--CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhH
Q 007879 280 ADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (586)
Q Consensus 280 ah~l~~~~~~~~i~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (586)
||+|++++|...+..++..++. .+|+++||||++..+..+...++..|..+.+.........+.+.++.. ....+
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~---~~~~k 244 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP---ADEEK 244 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec---CHHHH
Confidence 9999999999999999999886 789999999999999999988888887766544433334445544433 23445
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC
Q 007879 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (586)
Q Consensus 358 ~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 437 (586)
...+..++....+.++||||+++..++.++..|...++.+..+||.|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 56667777766778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccc
Q 007879 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (586)
Q Consensus 438 ~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~ 498 (586)
+|++||||++|.++..|+||+||+||.|..|.+++|+++.+...+..+.+.++.++....+
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~ 385 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPV 385 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcccc
Confidence 9999999999999999999999999999999999999999988999998887776654433
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.2e-61 Score=506.35 Aligned_cols=364 Identities=37% Similarity=0.584 Sum_probs=329.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.+++|++.+++++..+||..|+|+|.+++|.++.|+|++++||||||||++|++|+++++.... ..+++||++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~---~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR---FRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc---CCceEEEEe
Confidence 35799999999999999999999999999999999999999999999999999999999999885432 245799999
Q ss_pred CcHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 204 PTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
||++||.|+.+.+..++... ++++..++|+.+...+...+..+++|+|+||++|.+++... .+.+.++++||+||||+
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADR 158 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHHH
Confidence 99999999999999987654 78999999999998888888899999999999999999874 57789999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
|++++|...+..++..++..+|+++||||+++.+..+...++..|..+...... ....+.+.++.+.. ..+...+.
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~---~~k~~~l~ 234 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP---DERLPALQ 234 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999888775544 33446666665543 33566677
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
.++....+.++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 77776667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 443 I~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
|+|++|.++..|+||+||+||+|+.|.+++|+++.+...++.+.+.++..+..
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999998887766554
No 20
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-62 Score=473.64 Aligned_cols=373 Identities=35% Similarity=0.523 Sum_probs=321.3
Q ss_pred CCCCCCcccCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC--
Q 007879 116 PADGASFHANSFMELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-- 192 (586)
Q Consensus 116 ~~~~~~~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-- 192 (586)
+....++....|.+|||++.+...|.. +++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+.....
T Consensus 127 ~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki 206 (708)
T KOG0348|consen 127 QVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI 206 (708)
T ss_pred cccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc
Confidence 334556677889999999999999976 89999999999999999999999999999999999999999999987553
Q ss_pred -CCCCeEEEEEcCcHHHHHHHHHHHHHHhhc-CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCcc
Q 007879 193 -RIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLD 270 (586)
Q Consensus 193 -~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~ 270 (586)
+..++-+|||+|||+||.|+++.+.++.+. .++-.+++.||...+.....+++++.|+|+|||||++||.+...+.++
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 335778999999999999999999998765 467778899999988888999999999999999999999999889999
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCC-------------CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCC--
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCP-------------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS-- 335 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~-------------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-- 335 (586)
.+.+||+||||++++.||...+.+|++.+. ...|.+++|||++..+..+....+.+|+.|..+..
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~ 366 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHS 366 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhh
Confidence 999999999999999999999999988762 24788999999999999999999999999872211
Q ss_pred -----------------------CCCCCCceEEEEEEecchhh-hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHh
Q 007879 336 -----------------------AKRPSTLTEEVVRIRRMREV-NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG 391 (586)
Q Consensus 336 -----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~ 391 (586)
...|..+.+.+..++..-.. .-...+...++.....++|||+.+...++.-+.+|.
T Consensus 367 ~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~ 446 (708)
T KOG0348|consen 367 QLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFS 446 (708)
T ss_pred hcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHH
Confidence 22334455555555432222 222334445555566799999999999988877774
Q ss_pred h----------------------cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCC
Q 007879 392 L----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR 449 (586)
Q Consensus 392 ~----------------------~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~ 449 (586)
. .+.++..+||+|+|.+|..++..|...+..||+|||+++||||+|.|++||.||+|.
T Consensus 447 ~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~ 526 (708)
T KOG0348|consen 447 EALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF 526 (708)
T ss_pred hhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC
Confidence 2 235789999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 450 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 450 s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
++.+|+||+|||+|+|.+|.+++|..+.+..+++.+...
T Consensus 527 s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 527 STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999999988887765
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.6e-60 Score=494.08 Aligned_cols=370 Identities=40% Similarity=0.629 Sum_probs=328.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-CCCCeEEEEEcC
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTP 204 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vlil~P 204 (586)
+|++++|++.+++++..+||..|+++|.++++.++.|+|+++++|||+|||++|++|+++++..... ...++++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 6899999999999999999999999999999999999999999999999999999999999875322 123468999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
|++||.|+++.+..++.+.++++..++|+.....+...+..+++|+|+||++|++++... .+.+.++++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHh
Confidence 999999999999999999999999999999988888888889999999999999998765 5678999999999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCcEEEEeecCch-hHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH
Q 007879 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (586)
Q Consensus 285 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (586)
+++|...+..+...++...|+++||||++. .+..+....+.+|..+...........+.+.+..... ...+...+..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--~~~k~~~l~~ 238 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADD--LEHKTALLCH 238 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCC--HHHHHHHHHH
Confidence 999999999999999999999999999985 4777788888888888776655545556665554432 2345566677
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE
Q 007879 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (586)
Q Consensus 364 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 443 (586)
++......++||||+++..++.++..|...++.+..+||+|++.+|..++..|++|+++|||||+++++|||+|++++||
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 77665678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccc
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~ 498 (586)
+|++|.++..|+||+||+||+|..|.+++|+...|...+..+.+.+...+..+.+
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~ 373 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKARVI 373 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999988777666554433
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4e-60 Score=501.12 Aligned_cols=364 Identities=31% Similarity=0.503 Sum_probs=318.0
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCC----CCCCC
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP----KRIPA 196 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~----~~~~~ 196 (586)
+....+|.+++|++.+++.|...||..|||+|.++||.++.|+|+++++|||||||++|++|++.++.... ....+
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999876421 12246
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
+++|||+|||+||.|+.+.+..+....++++..++||.....+...+..+++|+|+||++|.+++... .+.++++.+||
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lV 275 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLV 275 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEEE
Confidence 78999999999999999999999888888999999998888777778889999999999999998875 67789999999
Q ss_pred EeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhh
Q 007879 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (586)
Q Consensus 277 iDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (586)
|||||+|++++|...+..++..++ .+|+++||||+++.+..+...++.++..+...........+.+....+.. ..
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~---~~ 351 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET---KQ 351 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc---hh
Confidence 999999999999999999998885 67999999999999999999999888888776554444445555554432 23
Q ss_pred HHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhh-cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccccc
Q 007879 357 QEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (586)
Q Consensus 357 ~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~-~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 433 (586)
+...+..++.. ....++||||+++..++.+...|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++||
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 33444444442 2346899999999999999999974 68999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHh
Q 007879 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 434 ldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (586)
||+|+|++||+||+|.++..|+||+|||||.|..|.+++|++..+...+..+.+.+
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887777766543
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-60 Score=448.33 Aligned_cols=363 Identities=34% Similarity=0.550 Sum_probs=319.1
Q ss_pred CCcccCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC---CCC
Q 007879 120 ASFHANSFME-LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIP 195 (586)
Q Consensus 120 ~~~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~---~~~ 195 (586)
.+.+..+|.+ +.-.+++++.++..||.+|||+|.++||.+|+|.|++..|.||+|||++|++|.+-++...+. ..+
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 3456677765 567899999999999999999999999999999999999999999999999999888776543 346
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEE
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~l 275 (586)
++.+|+++|||+||.|+.-.+.++ .+.+....+++|+.+...+...++++.+|+|+||++|.++...+ .+++.++.++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYl 371 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYL 371 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEE
Confidence 788999999999999998888776 46688889999999999999999999999999999999987775 6889999999
Q ss_pred EEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCC-CCCCceEEEEEEecchh
Q 007879 276 ILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK-RPSTLTEEVVRIRRMRE 354 (586)
Q Consensus 276 ViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 354 (586)
|+||||+|+++||..++.+++-.+.+.+|+++.|||+|+.+..+...++.+|+.+.+....- ....+.|.+ .+. .+
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~--~d 448 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVT--TD 448 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-Eec--cc
Confidence 99999999999999999999999999999999999999999999999999998887654332 223445544 222 23
Q ss_pred hhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccccc
Q 007879 355 VNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (586)
Q Consensus 355 ~~~~~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 433 (586)
..+...+..++. .....++||||..+..++.|..-|...|++...|||+-.|.+|..+++.|++|.++|||||++++||
T Consensus 449 ~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRG 528 (629)
T KOG0336|consen 449 SEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRG 528 (629)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcC
Confidence 344444444443 3456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 434 ldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
||+++++||+|||+|.|...|+||+||+||+|+.|.+++|++..|....+.+.+
T Consensus 529 lDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 529 LDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred CCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877666554
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-60 Score=468.00 Aligned_cols=363 Identities=37% Similarity=0.567 Sum_probs=324.6
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCC-------
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR------- 193 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~------- 193 (586)
+....+|.+-.+.+.+...++..+|..|||+|+.+||.+..|+++++||+||||||.+|++|++.+++.....
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 3445578877899999999999999999999999999999999999999999999999999999999876431
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCce
Q 007879 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (586)
Q Consensus 194 ~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~ 273 (586)
...|++||++|||+||.|+++...++....+++++..+|+.+...+...+.++++|+|+|||+|.+.+..+ .+.|.+++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-~i~l~~~k 228 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-KISLDNCK 228 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-eeehhhCc
Confidence 13589999999999999999999999988999999999999999999999999999999999999999876 68899999
Q ss_pred EEEEeCcccccC-CCcHHHHHHHHHHCCC----CCcEEEEeecCchhHHHHHHHhcCC-CeEEeeCCCCCCCCCceEEEE
Q 007879 274 VLILDEADRLLE-LGFSAEIHELVRLCPK----RRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVV 347 (586)
Q Consensus 274 ~lViDEah~l~~-~~~~~~i~~i~~~~~~----~~q~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (586)
++||||||+|++ ++|.+.|.+++..... .+|+++||||.+..+..++..++.+ .+.+.+.........+.|.+.
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 999999999999 9999999999988764 7899999999999999988888876 677777767777788888888
Q ss_pred EEecchhhhHHHHHHHHhhccC----Cc-----eEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhc
Q 007879 348 RIRRMREVNQEAVLLSLCSKTF----TS-----KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (586)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~~----~~-----~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 418 (586)
.+... .+...|+.++.... .+ +++|||.+++.+..+..+|...++++..+||..++.+|.+++..|++
T Consensus 309 ~V~~~---~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 309 FVNEM---EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eecch---hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 88543 44444555544222 23 79999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 419 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
|+..+||||++++||||||+|+|||+||+|.+..+|+||+|||||.|..|.++.|+...+....+.+.+
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999777666666554
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-58 Score=485.22 Aligned_cols=369 Identities=36% Similarity=0.610 Sum_probs=324.6
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCC----CCCeEE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR----IPAIRV 199 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~v 199 (586)
..+|.+++|++.++++|..+||..|+++|.++++.++.|+|+|+++|||||||++|++|+++.+...... ...+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4578999999999999999999999999999999999999999999999999999999999998765421 124689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 200 lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
|||+||++||.|+++.+..+....++.+..++|+.+...+...+. ..++|+|+||++|+.++... ...++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCceEEec
Confidence 999999999999999999999888999999999987776665554 56899999999999887664 5678999999999
Q ss_pred CcccccCCCcHHHHHHHHHHCCC--CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhh
Q 007879 279 EADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (586)
|||++++++|...+..++..++. .+|++++|||++.++..+...++.+|..+...........+.+.+..+. ...
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA---GSD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec---chh
Confidence 99999999999999999998864 5799999999999999999999988887766555444444555554443 234
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 357 ~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
+...+..++......++||||+++..++.+...|...++.+..+||++++.+|..+++.|++|+++|||||+++++||||
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 45566666666666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccc
Q 007879 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 437 ~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~ 496 (586)
+++++||+|++|.+...|+||+||+||.|+.|.+++|++..|...+..+.+.++.++...
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~ 461 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCE 461 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCccc
Confidence 999999999999999999999999999999999999999999888999988888776533
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.2e-61 Score=448.08 Aligned_cols=359 Identities=37% Similarity=0.598 Sum_probs=318.3
Q ss_pred CCCCCCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC--
Q 007879 115 APADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-- 192 (586)
Q Consensus 115 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-- 192 (586)
...+..+++..+|.++.++..+++.|+..|+..|||+|.+.+|.++.|+|.|..|-||||||++|.+|++...+....
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 444566778899999999999999999999999999999999999999999999999999999999999877665321
Q ss_pred ---CCCCeEEEEEcCcHHHHHHHHHHHHHHhhc------CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHh
Q 007879 193 ---RIPAIRVLILTPTRELAVQVHSMIEKIAQF------TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN 263 (586)
Q Consensus 193 ---~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~ 263 (586)
...+|-.|||||+|+||.|.++.+..++.. +.++++++.||.+...+...++.+.+|+|+|||||.++|..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 234677999999999999999999887653 46889999999999999999999999999999999999987
Q ss_pred cCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCce
Q 007879 264 SMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343 (586)
Q Consensus 264 ~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (586)
. .++|.-..++.+||||+|.++||...+..+..++...+|+++||||+|..+..+.+..+..|+.+++.......-.+.
T Consensus 320 K-~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldVi 398 (610)
T KOG0341|consen 320 K-IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVI 398 (610)
T ss_pred h-hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHH
Confidence 5 677888999999999999999999999999999999999999999999999999999999999998876655444443
Q ss_pred EEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q 007879 344 EEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDF 423 (586)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~v 423 (586)
|.+-.+ ....+...++..+.+ ...++||||..+.+++.+..||-..|+.+..+||+-.+++|...++.|+.|+.+|
T Consensus 399 QevEyV---kqEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDV 474 (610)
T KOG0341|consen 399 QEVEYV---KQEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDV 474 (610)
T ss_pred HHHHHH---HhhhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCce
Confidence 332211 223334444444443 4679999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCc
Q 007879 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (586)
Q Consensus 424 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d 478 (586)
||||++++.|+|+|++.||||||+|.....|+||+||+||.|+.|.+.+|+++..
T Consensus 475 LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 475 LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred EEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999998754
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-59 Score=447.98 Aligned_cols=367 Identities=37% Similarity=0.555 Sum_probs=334.1
Q ss_pred CCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC--CCCC
Q 007879 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPA 196 (586)
Q Consensus 119 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~--~~~~ 196 (586)
..+....+|+++++++.|..++....|.+|||+|.+++|..+.|++++..|.||||||.+|+.|++.+++..+. ...+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 34566789999999999999999999999999999999999999999999999999999999999999987653 2457
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
|-.||+||||+||.|++.++++|++..++++++++||.+...+...|..++.||||||+||++++.-. ..++.++++||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK-atn~~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK-ATNLSRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh-cccceeeeEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999998765 68899999999
Q ss_pred EeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhh
Q 007879 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (586)
Q Consensus 277 iDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (586)
||||++|.++||..++..|...+.+.+|+|+||||++..+..+++..+..|+.+...........++|.+..++.. ..
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~--~~ 453 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE--EK 453 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc--HH
Confidence 9999999999999999999999999999999999999999999999999999988776666667778777666532 33
Q ss_pred HHHHHHH-HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCC
Q 007879 357 QEAVLLS-LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (586)
Q Consensus 357 ~~~~l~~-~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 435 (586)
+...|.. +..-...+++|||+.-...++.+...|...++++..+||.+.|.+|.+++..|+.+...|||+|++++||+|
T Consensus 454 Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargld 533 (731)
T KOG0339|consen 454 KLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLD 533 (731)
T ss_pred HHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCC
Confidence 4444433 334445689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 436 i~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
|+.+++|||||+-.+...|.||+||+||+|.+|.+++|+++.|..+.-.|.+.
T Consensus 534 I~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 534 IPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred ccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999998776666554
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-56 Score=464.85 Aligned_cols=366 Identities=33% Similarity=0.530 Sum_probs=322.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.++++++.+.++|..+||..|+|+|.++++.++.|+|+++++|||||||++|++|++..+... ..++++|||+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---LNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---CCCceEEEEC
Confidence 4779999999999999999999999999999999999999999999999999999999999887432 2345799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
||++|+.|+.+.+..++...++.+..+.|+.........+..+++|+|+||++|.+.+... .+.++++++|||||||++
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHH
Confidence 9999999999999999888888888899998877777778888999999999999988765 467899999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (586)
++++|...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.++.... ...+...+..
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 260 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--EEWKFDTLCD 260 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--HHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888776554433334445555444432 2223444555
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE
Q 007879 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (586)
Q Consensus 364 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 443 (586)
++......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 55555567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+.+.+...+..
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~ 392 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEE 392 (401)
T ss_pred EECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccc
Confidence 9999999999999999999999999999999999999999999888776654
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-58 Score=426.03 Aligned_cols=374 Identities=30% Similarity=0.485 Sum_probs=331.0
Q ss_pred CCCCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCC
Q 007879 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRI 194 (586)
Q Consensus 117 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~ 194 (586)
.+...++..+|++|+|+|++++++..|+|.+|+.+|..++|.++.. +++|.++..|+|||.+|.|.+|.++... .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---~ 158 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---V 158 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---c
Confidence 3445678899999999999999999999999999999999999986 7999999999999999999999886443 3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceE
Q 007879 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (586)
Q Consensus 195 ~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~ 274 (586)
..|++++|+|||+||.|+.+++.+++++.++...+...+.....- . .=..+|+|+|||.+++++.....+.+..+++
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~--~i~eqIviGTPGtv~Dlm~klk~id~~kikv 235 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-N--KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKV 235 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-C--cchhheeeCCCccHHHHHHHHHhhChhhceE
Confidence 456899999999999999999999999998888887766522110 0 1124899999999999998866788999999
Q ss_pred EEEeCcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecch
Q 007879 275 LILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (586)
Q Consensus 275 lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (586)
+|+||||.|++ .||...-..|.+.+|++.|+++||||....+..++.....++..+...........+.|.++.+..
T Consensus 236 fVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~-- 313 (477)
T KOG0332|consen 236 FVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC-- 313 (477)
T ss_pred EEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc--
Confidence 99999999986 579999999999999999999999999999999999999999888887777777888888887753
Q ss_pred hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccccc
Q 007879 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (586)
Q Consensus 354 ~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 433 (586)
...+..++..+.....-+..||||.|+..+.+|+..|...|+.+..+||.|+..+|..++..|+.|..+|||+|++++||
T Consensus 314 ~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 46777888888777777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCC------ChhHHHHHhhhcccCCCcceEEEEeccC-cHHHHHHHHHHhcCccccccc
Q 007879 434 LDIIGVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSRIV 498 (586)
Q Consensus 434 ldi~~v~~VI~~~~p~------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-d~~~~~~i~~~~~~~~~~~~~ 498 (586)
||++.|+.|||||+|. ++..|+||+||+||+|+.|.++.|+... ....+..|++.++.++..+..
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 9999999999999997 6889999999999999999999998764 577888999998877765443
No 30
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-57 Score=435.84 Aligned_cols=370 Identities=34% Similarity=0.533 Sum_probs=310.8
Q ss_pred CCCCCcccCCcccCCCCHHHHH----------HHHHcCCCCCcHHHHHHHHHHhc---------CCCeEEEcCCCchhHH
Q 007879 117 ADGASFHANSFMELNLSRPLLR----------ACEALGYSKPTPIQAACIPLALT---------GRDICGSAITGSGKTA 177 (586)
Q Consensus 117 ~~~~~~~~~~f~~~~l~~~l~~----------~l~~~~~~~~~~~Q~~~i~~il~---------g~~~lv~~~TGsGKT~ 177 (586)
......+...|+.++++..+.. ++..+++.+++|+|..++|+++. .+|++|.||||||||+
T Consensus 119 ~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTL 198 (620)
T KOG0350|consen 119 ETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTL 198 (620)
T ss_pred eecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCcee
Confidence 3333444555777777665443 48889999999999999999964 5799999999999999
Q ss_pred HhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCC-C----cEEEE
Q 007879 178 AFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-P----DIVVA 252 (586)
Q Consensus 178 ~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~Ili~ 252 (586)
+|.||+++.+..++- +..++|||+||++|+.|++..+..++...|+.|+.+.|..+.......+.+. + ||+|+
T Consensus 199 aY~iPIVQ~L~~R~v--~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVa 276 (620)
T KOG0350|consen 199 AYVIPIVQLLSSRPV--KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVA 276 (620)
T ss_pred eehhHHHHHHccCCc--cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEc
Confidence 999999999987754 4579999999999999999999999999999999999999888777776653 3 89999
Q ss_pred CcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCC--------------------------------
Q 007879 253 TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP-------------------------------- 300 (586)
Q Consensus 253 Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~-------------------------------- 300 (586)
|||||++|+.+.+.+.|++++++||||||+|++..|..++..++..+.
T Consensus 277 TPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~ 356 (620)
T KOG0350|consen 277 TPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGK 356 (620)
T ss_pred CchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCC
Confidence 999999999988899999999999999999998877777766654332
Q ss_pred --CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeC----CCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEE
Q 007879 301 --KRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD----PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVI 374 (586)
Q Consensus 301 --~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 374 (586)
+..+.+++|||++.+...+....++.|....+. .....+..+.+..+... ...+...+..++......++|
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~---~~~kpl~~~~lI~~~k~~r~l 433 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE---PKFKPLAVYALITSNKLNRTL 433 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecc---cccchHhHHHHHHHhhcceEE
Confidence 123468999999999888888888888555443 23345555655555432 234555666777777788999
Q ss_pred EEeccHHHHHHHHHHHh----hcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCC
Q 007879 375 IFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (586)
Q Consensus 375 IF~~s~~~~~~l~~~l~----~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s 450 (586)
+|+++...+.++...|+ ..++++..+.|.++...|...+++|..|.+++|||+|+++||+|+.+|+.|||||+|.+
T Consensus 434 cf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~ 513 (620)
T KOG0350|consen 434 CFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPAS 513 (620)
T ss_pred EEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCch
Confidence 99999999999999887 34677888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcC
Q 007879 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (586)
Q Consensus 451 ~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~ 491 (586)
...|+||+||+||+|+.|.|+.+....+...+..+.+..+.
T Consensus 514 ~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 514 DKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred hhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999988888777776554
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-56 Score=424.27 Aligned_cols=364 Identities=39% Similarity=0.586 Sum_probs=335.6
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.+++|+..+++++...||..|||+|++.+|.++.+++++..+.||||||.+|++|+++++.... ..+.+++|+.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 56899999999999999999999999999999999999999999999999999999999999998766 3577999999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
|||+||.|+.+.++.+++++++++.+++|+.+..+++..+..++|||++||++++...... .+.|+.+.+||+||||++
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhhhHH
Confidence 9999999999999999999999999999999999999999999999999999998765554 578999999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (586)
..+||.+++.+++..+|..+|+++||||+|..+..+.+..+..|+.+..+........+...+..+ ....+..+|+.
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~---~~a~K~aaLl~ 253 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV---RKAEKEAALLS 253 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeee---ccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988777776666676666655 34566777777
Q ss_pred Hhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 364 LCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 364 ~~~~~-~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
++... ....++|||.|...++.+...|...|+.+..++|.+.+..|...+..|+.++..+||.|++++||+|||..+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 76643 34679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcc
Q 007879 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493 (586)
Q Consensus 443 I~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~ 493 (586)
||||.|.+...|+||+||++|+|+.|.+|.++.+.+..++-.|..-++..+
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCce
Confidence 999999999999999999999999999999999999999888887766543
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-55 Score=415.42 Aligned_cols=365 Identities=32% Similarity=0.535 Sum_probs=334.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.+++|++.|++.+...||.+|+.+|+.||+++..|.|+++.+++|+|||.+|.+++++.+-...+ ...+|+++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k---e~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK---ETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH---HHHHHHhc
Confidence 458999999999999999999999999999999999999999999999999999999999998744332 34799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
|+|+||.|+......++...+.++..+.|+.+...+...+. ..++|+++||+++++.+... .+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 99999999999999999999999999999988875555554 45899999999999999876 67788899999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
|+..||...+..+.+.+|...|++++|||++.++....+.++.+|+.+.+.........+.|+++.+.... +...+.
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~---k~~~l~ 257 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE---KLDTLC 257 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc---cccHHH
Confidence 99999999999999999999999999999999999999999999999999887777777888888875443 666666
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
.+.. .-...+||||++..+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||+|+.++||+|+..+..|
T Consensus 258 dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 258 DLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 6666 45688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccccc
Q 007879 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (586)
Q Consensus 443 I~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~ 497 (586)
|||++|.+..+|+||+||+||.|++|.++.+++..+...++.+.+.++..+.+..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p 390 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELP 390 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecc
Confidence 9999999999999999999999999999999999999999999998888776543
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-54 Score=453.88 Aligned_cols=370 Identities=37% Similarity=0.541 Sum_probs=330.4
Q ss_pred CCCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC--CCC
Q 007879 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIP 195 (586)
Q Consensus 118 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~--~~~ 195 (586)
...+.+..+|.+.+++..++..++.+||.+|+|+|.+|||+|+.|+|+|..|.||||||++|+||++.++...+. ...
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd 437 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD 437 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC
Confidence 345667889999999999999999999999999999999999999999999999999999999999987765432 235
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC--CcCccCce
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM--SVDLDDLA 273 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~--~~~l~~~~ 273 (586)
+|.+||++|||+||.|+.+++..|+...++++++++|+.....+...+++++.|+|||||++++.+..+. -.++..+.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999886542 23455666
Q ss_pred EEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecch
Q 007879 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (586)
Q Consensus 274 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (586)
++|+||||+|.+++|.+++..|++.+++.+|+++||||++..+..+....++.|+.+.+.........+.+.+..+..
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~-- 595 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI-- 595 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC--
Confidence 999999999999999999999999999999999999999999999999999999998887666556666666555431
Q ss_pred hhhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 007879 354 EVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (586)
Q Consensus 354 ~~~~~~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 432 (586)
+..+...|..++. ....+++||||.....|..+..-|...|+.|..+||+.++.+|..+++.|++|.+.+||+|++++|
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 3445555555554 344789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHh
Q 007879 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 433 Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (586)
|+|++.+.+||||+.|.-...|+||+|||||+|++|.|++|+++.+..+.-.|.+.+
T Consensus 676 GLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 676 GLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999997777666676665
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.3e-51 Score=447.27 Aligned_cols=356 Identities=20% Similarity=0.243 Sum_probs=277.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
.+++.+.++|..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... +++++|||+||++||.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----CCcEEEEEcChHHHHH
Confidence 488999999999999999999999999999999999999999999999999999998753 2458999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC---CcCccCceEEEEeCcccccCCC
Q 007879 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELG 287 (586)
Q Consensus 211 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~---~~~l~~~~~lViDEah~l~~~~ 287 (586)
|+.+.+..+. ..++++..+.|+.+.. +...+..+++|+|+||++|...+.... ...++++++|||||||.+.+.
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~- 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV- 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-
Confidence 9999999986 4578888888877654 445667779999999999875332210 122789999999999999763
Q ss_pred cHHHHHHH-------HHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEec---------
Q 007879 288 FSAEIHEL-------VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR--------- 351 (586)
Q Consensus 288 ~~~~i~~i-------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 351 (586)
|...+..+ ....+..+|++++|||+++... +....+..+..+.. ... .+....+.....+.
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~~~-~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVT-EDG-SPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-CCC-CCcCceEEEEecCCccccccccc
Confidence 55444333 2334567899999999987754 56666666654422 211 11111221111111
Q ss_pred -----chhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--------CCceEEecCCCCHHHHHHHHHHHhc
Q 007879 352 -----MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRK 418 (586)
Q Consensus 352 -----~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--------~~~~~~l~~~~~~~~r~~~~~~f~~ 418 (586)
.....+...+..++.. +.++||||+|++.++.++..|... +..+..+||++++.+|..+++.|++
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 0011233344444443 579999999999999999987653 5678899999999999999999999
Q ss_pred CCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEecc--CcHHHHHHHHHHhcCccccc
Q 007879 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD--NDRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 419 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~--~d~~~~~~i~~~~~~~~~~~ 496 (586)
|++++||||+++++||||+++++||+|++|.+...|+||+|||||.|+.|.++++... .|...+..+.+.++..++..
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999998863 45666666666666665544
Q ss_pred cc
Q 007879 497 IV 498 (586)
Q Consensus 497 ~~ 498 (586)
.+
T Consensus 408 ~~ 409 (742)
T TIGR03817 408 VF 409 (742)
T ss_pred ee
Confidence 33
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=8e-53 Score=417.01 Aligned_cols=360 Identities=29% Similarity=0.466 Sum_probs=321.4
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEE
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vl 200 (586)
+.....|+++.|..+++..|+..+|..||++|..|||.++.+-|+||++..|+|||++|.+.+++.+..+.. .++.+
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~---~~q~~ 97 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSS---HIQKV 97 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccC---cceeE
Confidence 445678999999999999999999999999999999999999999999999999999999999988765543 56899
Q ss_pred EEcCcHHHHHHHHHHHHHHhh-cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 201 ILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
|++|||++|.|+.+.+..++. +.|++|.++.||.........++ .++|+|+||||+..++... .++.++++++|+||
T Consensus 98 Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~-~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 98 IVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELG-AMNMSHVRLFVLDE 175 (980)
T ss_pred EEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhc-CCCccceeEEEecc
Confidence 999999999999999999876 57999999999988776655554 4789999999999988775 68899999999999
Q ss_pred cccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhh---
Q 007879 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV--- 355 (586)
Q Consensus 280 ah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 355 (586)
||.+++ ..|...+..|++.+|..+|++++|||.+..+..++..++.+|..+..+........+.|+++........
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsvee 255 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEE 255 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHH
Confidence 999998 5599999999999999999999999999999999999999999999888777777888888877654322
Q ss_pred --hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccccc
Q 007879 356 --NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (586)
Q Consensus 356 --~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 433 (586)
.+...|-.+++..+-...||||+....|+-++.+|...|+.|-++.|.|++.+|..++..++.-.++|||+|+..+||
T Consensus 256 mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 256 MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 234455666677777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcH-HHHHHH
Q 007879 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR-SLLKAI 485 (586)
Q Consensus 434 ldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~-~~~~~i 485 (586)
||-++|++|||.|+|.+..+|.||+|||||+|..|.+++|+..... .-+..+
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999999999999999876543 333333
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.1e-50 Score=432.38 Aligned_cols=344 Identities=21% Similarity=0.263 Sum_probs=265.5
Q ss_pred Cccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 126 SFME--LNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 126 ~f~~--~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
.|.. ++....+...++. +|+..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ++.+|||
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVI 506 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVI 506 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEE
Confidence 4553 4555666666554 89999999999999999999999999999999999999999854 2369999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhc------CCCcEEEECcHHHHH--H-HHhcCCc-CccCc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR------SMPDIVVATPGRMID--H-LRNSMSV-DLDDL 272 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ili~Tp~~l~~--~-l~~~~~~-~l~~~ 272 (586)
+|+++|+.++...+.. .++.+..+.++.....+...+. ..++|+|+||++|.. . +.....+ ....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999999854444433 4788999999988766654433 468999999999852 1 2111111 13458
Q ss_pred eEEEEeCcccccCCC--cHHHHHHH--HHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEE
Q 007879 273 AVLILDEADRLLELG--FSAEIHEL--VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348 (586)
Q Consensus 273 ~~lViDEah~l~~~~--~~~~i~~i--~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (586)
.+|||||||++++|| |+..+..+ +....+..++++||||+++.+...+...+.............++ ++...++.
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~ 661 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVVP 661 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEec
Confidence 899999999999998 66666553 33333567899999999998887666555433222222222233 33222221
Q ss_pred EecchhhhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEec
Q 007879 349 IRRMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (586)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT 427 (586)
. . ......+..++. ...+...||||.++..++.++..|...|+.+..+||+|++.+|..+++.|..|+++|||||
T Consensus 662 --k-~-kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 662 --K-T-KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred --c-c-hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 1 1 111223334443 3335678999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 428 ~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
+++++|||+|+|++||||++|.++..|+||+|||||.|.+|.|++||+..|...++.+..
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988877777664
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-51 Score=406.39 Aligned_cols=366 Identities=35% Similarity=0.491 Sum_probs=315.0
Q ss_pred CcccCCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCC--CCC
Q 007879 121 SFHANSFME----LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRI 194 (586)
Q Consensus 121 ~~~~~~f~~----~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~--~~~ 194 (586)
+....+|.+ +..++.+++.+...+|..|+|+|.+++|.++.+++++.|+|||||||++|.+|++.++.... +..
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 445566765 56889999999999999999999999999999999999999999999999999999987654 233
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHh--hcCCceEEEEeCCCChHHHHHH-hcCCCcEEEECcHHHHHHHHhc-CCcCcc
Q 007879 195 PAIRVLILTPTRELAVQVHSMIEKIA--QFTDIRCCLVVGGLSTKMQETA-LRSMPDIVVATPGRMIDHLRNS-MSVDLD 270 (586)
Q Consensus 195 ~~~~vlil~Ptr~La~Q~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ili~Tp~~l~~~l~~~-~~~~l~ 270 (586)
.+.+++|+.|||+||.|++..+.++. ...++++..+............ ....++|+++||-++..++... ..+.+.
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 57799999999999999999999988 5556665555444333222111 2234699999999999988764 236789
Q ss_pred CceEEEEeCcccccCC-CcHHHHHHHHHHCC-CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEE
Q 007879 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348 (586)
Q Consensus 271 ~~~~lViDEah~l~~~-~~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (586)
++.++|+||||++.+. .|..++..++..|. +...+-+||||++..+.+++......+..+.+.........+.|..+.
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhee
Confidence 9999999999999988 89999998888775 455677899999999999999999999888887666666677777776
Q ss_pred EecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHH-hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEec
Q 007879 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (586)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l-~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT 427 (586)
+. ....+..++..++......++|||+.+.+.|..|...| ...++.+..+||..++.+|..++++|+.|++.|||||
T Consensus 368 ~g--se~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 368 CG--SEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred ee--cchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 65 34667778888888888999999999999999999999 6789999999999999999999999999999999999
Q ss_pred CcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 428 ~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
++++||+|+.||+.|||||.|.+...|+||+||+||+|+.|.+++||+..|...++.+.+-
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-49 Score=415.09 Aligned_cols=326 Identities=22% Similarity=0.302 Sum_probs=255.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.+||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++.. ++.+|||+||++|+.|+.+.+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------~~~~lVi~P~~~L~~dq~~~l~~--- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------DGITLVISPLISLMEDQVLQLKA--- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------CCcEEEEecHHHHHHHHHHHHHH---
Confidence 479999999999999999999999999999999999999999753 23589999999999998888775
Q ss_pred cCCceEEEEeCCCChHHHHHH----hcCCCcEEEECcHHHHHHHHhcCCc-CccCceEEEEeCcccccCCC--cHHHHHH
Q 007879 222 FTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELG--FSAEIHE 294 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ili~Tp~~l~~~l~~~~~~-~l~~~~~lViDEah~l~~~~--~~~~i~~ 294 (586)
.++.+..+.++......... ....++|+++||+++.....-...+ ...++++|||||||++++|| |...+..
T Consensus 74 -~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 74 -SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred -cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 36778888887765533222 2345899999999975422100012 46789999999999999998 5555544
Q ss_pred H---HHHCCCCCcEEEEeecCchhHHHHHHHhc--CCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh-cc
Q 007879 295 L---VRLCPKRRQTMLFSATLTEDVDELIKLSL--TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-KT 368 (586)
Q Consensus 295 i---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 368 (586)
+ ...+ +..+++++|||+++.+...+...+ ..|..+... ..++ .+...+.. .. ......+..++. ..
T Consensus 153 l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s--~~r~-nl~~~v~~---~~-~~~~~~l~~~l~~~~ 224 (470)
T TIGR00614 153 LGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS--FDRP-NLYYEVRR---KT-PKILEDLLRFIRKEF 224 (470)
T ss_pred HHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC--CCCC-CcEEEEEe---CC-ccHHHHHHHHHHHhc
Confidence 3 3444 467899999999998776655443 344433321 1122 22222211 11 122223444443 34
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP 448 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p 448 (586)
.+..+||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 449 RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 449 ~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
.++..|+||+|||||.|.+|.|++|+++.|...++.+...
T Consensus 305 ~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 305 KSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999999999999999998888877653
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.4e-47 Score=412.21 Aligned_cols=333 Identities=21% Similarity=0.278 Sum_probs=259.6
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 132 LSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 132 l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
+.....+.|+. +||..|+|+|.++++.++.|+|+++++|||+|||++|++|++.. .+.+|||+|+++|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMK 79 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHH
Confidence 34444445544 79999999999999999999999999999999999999999854 225899999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEeCCCChHHHHHH----hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC
Q 007879 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (586)
Q Consensus 211 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 286 (586)
|+.+.+..+ ++.+..+.++......... .....+++++||++|....... .+...++++|||||||++++|
T Consensus 80 dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 80 DQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccc
Confidence 998888763 6777777777665544322 2345789999999986422111 233457899999999999998
Q ss_pred C--cHHHHHH---HHHHCCCCCcEEEEeecCchhHHHHHHHh--cCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHH
Q 007879 287 G--FSAEIHE---LVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (586)
Q Consensus 287 ~--~~~~i~~---i~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (586)
| |...+.. +...+ +..+++++|||+++.....+... +..|..... ...++ ++...+.. ......
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~~~r~-nl~~~v~~-----~~~~~~ 225 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRP-NIRYTLVE-----KFKPLD 225 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--CCCCC-cceeeeee-----ccchHH
Confidence 8 5544433 34444 46789999999998876554433 334443322 11122 22222111 112233
Q ss_pred HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCc
Q 007879 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439 (586)
Q Consensus 360 ~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 439 (586)
.+..++....+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|+.|+.+|||||+++++|||+|+|
T Consensus 226 ~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V 305 (607)
T PRK11057 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV 305 (607)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc
Confidence 44555555567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 440 QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 440 ~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
++||+|++|.|...|+||+|||||.|.+|.|++|+++.|...++.+..
T Consensus 306 ~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877776553
No 40
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-49 Score=348.30 Aligned_cols=332 Identities=35% Similarity=0.607 Sum_probs=287.5
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEE
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vl 200 (586)
..+.+.|.++-|.|++++++-..||..|+.+|.+|||...-|-|++++|..|.|||.+|.+..++.+-.-++ ...+|
T Consensus 38 ~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g---~vsvl 114 (387)
T KOG0329|consen 38 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG---QVSVL 114 (387)
T ss_pred EEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC---eEEEE
Confidence 345677999999999999999999999999999999999999999999999999999999999998755433 45799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
++|.||+||.|+.+...+++++ +++++.+++||...+.....+++.|+|+|+|||+++.+.++. .+++++++..|+||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDE 193 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhh
Confidence 9999999999999999999887 479999999999999999999999999999999999988875 78999999999999
Q ss_pred cccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCC-CCCceEEEEEEecchhhhH
Q 007879 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMREVNQ 357 (586)
Q Consensus 280 ah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 357 (586)
||.|+. ...+..++++.+..|...|+++||||++.++......++.+|..+.++...+. .-.+.|+++.+ .+..+
T Consensus 194 cdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkL---ke~eK 270 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKL---KENEK 270 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhh---hhhhh
Confidence 999885 45788999999999999999999999999999999999999999888766542 23456666655 34455
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC
Q 007879 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (586)
Q Consensus 358 ~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 437 (586)
...+..++....-..++||+.+... | . | +.+ +|||++++||+||.
T Consensus 271 Nrkl~dLLd~LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdie 315 (387)
T KOG0329|consen 271 NRKLNDLLDVLEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIE 315 (387)
T ss_pred hhhhhhhhhhhhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcc
Confidence 5666677766667899999998765 0 0 3 123 89999999999999
Q ss_pred CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEecc-CcHHHHHHHHHHhcCccc
Q 007879 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAGSKLK 494 (586)
Q Consensus 438 ~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~-~d~~~~~~i~~~~~~~~~ 494 (586)
.++.|||||+|.++.+|+||+|||||.|.+|.++.|++. ++..++..++.+....+.
T Consensus 316 rvNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~ 373 (387)
T KOG0329|consen 316 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIK 373 (387)
T ss_pred cceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHh
Confidence 999999999999999999999999999999999999986 467778888877655443
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=9.5e-47 Score=407.38 Aligned_cols=324 Identities=24% Similarity=0.341 Sum_probs=260.0
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.+||..|+|+|.++++.++.|+|+++++|||+|||++|++|++.. .+.++||+|+++|+.|+.+.+..+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 389999999999999999999999999999999999999999743 225899999999999988888763
Q ss_pred cCCceEEEEeCCCChHHHHHH----hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC--cHHHHHHH
Q 007879 222 FTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 295 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~--~~~~i~~i 295 (586)
++.+..++++.+....... ..+..+|+++||++|....... .+...++++|||||||++..|| |+..+..+
T Consensus 77 --gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 --GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 6788888888776654332 3456899999999996432221 2345689999999999999988 55555444
Q ss_pred ---HHHCCCCCcEEEEeecCchhHHHHHHHhcC--CCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCC
Q 007879 296 ---VRLCPKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370 (586)
Q Consensus 296 ---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 370 (586)
...++. .+++++|||+++.+...+...+. .+..+. ....++ .+...... ...+...+..++....+
T Consensus 154 ~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~-nl~~~v~~-----~~~~~~~l~~~l~~~~~ 224 (591)
T TIGR01389 154 GSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI--TSFDRP-NLRFSVVK-----KNNKQKFLLDYLKKHRG 224 (591)
T ss_pred HHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCC-CcEEEEEe-----CCCHHHHHHHHHHhcCC
Confidence 444544 45999999999988876665554 333222 122222 22222211 12233445555555557
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCC
Q 007879 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (586)
Q Consensus 371 ~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s 450 (586)
.++||||+|+..++.++..|...++++..+||+|+..+|..+++.|.+|.++|||||+++++|||+|+|++||+|++|.|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s 304 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGN 304 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 451 ~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
...|.|++|||||.|.+|.|+++++..|...++.+...
T Consensus 305 ~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 305 LESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred HHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998887776653
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.5e-45 Score=406.84 Aligned_cols=341 Identities=21% Similarity=0.270 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCC---CCCeEEEEEcCcHHH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR---IPAIRVLILTPTREL 208 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~vlil~Ptr~L 208 (586)
+++.+.+.+.. +|..|+|+|.++++.++.|+|++++||||||||++|.+|++.++...... .+++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66777776665 78999999999999999999999999999999999999999998753221 346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hc-CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC-cCccCceEE
Q 007879 209 AVQVHSMIEK-------IA----QF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVL 275 (586)
Q Consensus 209 a~Q~~~~~~~-------l~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~l~~~~~l 275 (586)
+.|+++.+.. ++ .. .++++.+.+|+.+...+...+...++|+|+||++|..++.+... ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 22 11 26788999999988888778888899999999999877754321 147899999
Q ss_pred EEeCcccccCCCcHHH----HHHHHHHCCCCCcEEEEeecCchh--HHHHHHHhc----CCCeEEeeCCCCCCCCCceEE
Q 007879 276 ILDEADRLLELGFSAE----IHELVRLCPKRRQTMLFSATLTED--VDELIKLSL----TKPLRLSADPSAKRPSTLTEE 345 (586)
Q Consensus 276 ViDEah~l~~~~~~~~----i~~i~~~~~~~~q~i~~SAT~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 345 (586)
||||||.+.+..+... +..+....+...|+|++|||+++. +..++.... ..+..+.. ........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~-~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVD-ARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEc-cCCCccceEEEe
Confidence 9999999987654433 444555555778999999999762 222222111 11222211 111111011000
Q ss_pred -----EEEEecc-hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc------CCceEEecCCCCHHHHHHHH
Q 007879 346 -----VVRIRRM-REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEAL 413 (586)
Q Consensus 346 -----~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~------~~~~~~l~~~~~~~~r~~~~ 413 (586)
....... ........+..++. .++++||||+|+..++.++..|... +..+..+||++++.+|..++
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 0000000 00011122222222 2568999999999999999988762 46899999999999999999
Q ss_pred HHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCC-CcceEEEEecc
Q 007879 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG-REGYAVTFVTD 476 (586)
Q Consensus 414 ~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g-~~g~~~~l~~~ 476 (586)
+.|++|.++|||||+++++|||+|++++||+|+.|.++..|+||+||+||.+ ..+.++++...
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999864 34445544443
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.7e-45 Score=404.50 Aligned_cols=334 Identities=25% Similarity=0.323 Sum_probs=255.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
.|++++|++.+++++...|+..|+|+|.++++. ++.|+|+++++|||||||++|.+|++.++.. +.++|||+|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~------~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR------GGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc------CCcEEEEeC
Confidence 477899999999999999999999999999998 7789999999999999999999999998852 347999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
+++||.|+++.+..+.. .++++..++|+...... ....++|+|+||+++..++++. ...+.++++||+||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccC
Confidence 99999999999998654 48899999998754332 2345799999999998888764 3447899999999999999
Q ss_pred CCCcHHHHHHHHH---HCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEE------------EE
Q 007879 285 ELGFSAEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV------------RI 349 (586)
Q Consensus 285 ~~~~~~~i~~i~~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 349 (586)
+.++...+..++. ..+...|+|++|||+++. ..+.. ++.... + ....++..+..... .+
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~-~---~~~~rpv~l~~~v~~~~~~~~~~~~~~~ 224 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAEL-V---DSEWRPIDLREGVFYGGAIHFDDSQREV 224 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCc-c---cCCCCCCCCeeeEecCCeeccccccccC
Confidence 8777766665543 345678999999999752 22222 221110 0 00111111111100 00
Q ss_pred ecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc------------------------------------
Q 007879 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------------ 393 (586)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~------------------------------------ 393 (586)
...........+...+. .++++||||+|+..++.++..|...
T Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 225 EVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 00000111122222222 4679999999999999888777532
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE----eC-----CCCChhHHHHHhhhcccC
Q 007879 394 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-----CPRDLTSYVHRVGRTARA 464 (586)
Q Consensus 394 ~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~-----~p~s~~~y~Qr~GR~gR~ 464 (586)
...++.+||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ |+ .|.+..+|.||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136889999999999999999999999999999999999999999999997 66 688999999999999998
Q ss_pred CCc--ceEEEEeccCc
Q 007879 465 GRE--GYAVTFVTDND 478 (586)
Q Consensus 465 g~~--g~~~~l~~~~d 478 (586)
|.. |.+++++...+
T Consensus 383 g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 383 GLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCceEEEEecCch
Confidence 865 89999887643
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-44 Score=393.23 Aligned_cols=335 Identities=20% Similarity=0.270 Sum_probs=259.9
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
+|.++++++.+.+.+...||..|+|+|.++++. ++.|+|+++++|||||||++|.+|++.++... +.++|||+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----GGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----CCeEEEEeC
Confidence 477899999999999999999999999999986 78999999999999999999999999988653 347999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
+++||.|+++.+..+.. .++++..++|+...... ....++|+|+||+++..++++. ...++++++||+||+|.+.
T Consensus 77 ~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 77 LKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred hHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccC
Confidence 99999999999987643 58899999998765432 2356899999999998887754 3457899999999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEE-----EEEEecch----hh
Q 007879 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE-----VVRIRRMR----EV 355 (586)
Q Consensus 285 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~ 355 (586)
+.++...+..++..++...|+|++|||+++ ...+.. ++...... ...++..+... +....... ..
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~----~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVV----SDWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcccc----CCCCCCcceeeEecCCeeeccCcchhcchH
Confidence 888889999999988889999999999975 333333 33322111 11122222111 11111100 00
Q ss_pred hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh---------------------------------cCCceEEecC
Q 007879 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---------------------------------AALKAAELHG 402 (586)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~---------------------------------~~~~~~~l~~ 402 (586)
.....+...+. .++++||||+|+..++.++..|.. ....++.+||
T Consensus 226 ~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 226 SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 11112222332 367899999999999877655531 1235899999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE-------eCCCC-ChhHHHHHhhhcccCC--CcceEEE
Q 007879 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------YACPR-DLTSYVHRVGRTARAG--REGYAVT 472 (586)
Q Consensus 403 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~-------~~~p~-s~~~y~Qr~GR~gR~g--~~g~~~~ 472 (586)
+|++.+|..+++.|++|.++|||||+++++|+|+|++++||. ++.|. +...|.||+|||||.| ..|.+++
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii 383 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAII 383 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEE
Confidence 999999999999999999999999999999999999999994 55544 4679999999999965 5699999
Q ss_pred EeccCc
Q 007879 473 FVTDND 478 (586)
Q Consensus 473 l~~~~d 478 (586)
++...+
T Consensus 384 ~~~~~~ 389 (720)
T PRK00254 384 VATTEE 389 (720)
T ss_pred EecCcc
Confidence 987655
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.7e-43 Score=375.69 Aligned_cols=315 Identities=21% Similarity=0.221 Sum_probs=238.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEE-EEcCcHHHHHHHHHHHHHHh
Q 007879 143 LGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL-ILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~-~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vl-il~Ptr~La~Q~~~~~~~l~ 220 (586)
.||. |||||.++++.++.|+ ++++++|||||||.+|.++++.. ... ...++.| +++|||+||.|+++.+..++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~---~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG---AKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc---ccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 5888 9999999999999998 57778999999999765555422 111 1233445 47799999999999999998
Q ss_pred hcC-----------------------CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC-----------
Q 007879 221 QFT-----------------------DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS----------- 266 (586)
Q Consensus 221 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~----------- 266 (586)
+.. ++++..++||.+...++..+..+++|||+|+. ++.+...
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccccccc
Confidence 754 48899999999999999999999999999954 4433211
Q ss_pred -c---CccCceEEEEeCcccccCCCcHHHHHHHHHHC--CC---CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCC
Q 007879 267 -V---DLDDLAVLILDEADRLLELGFSAEIHELVRLC--PK---RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337 (586)
Q Consensus 267 -~---~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~--~~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (586)
+ .+++++++|+|||| +..+|...+..|++.+ ++ ++|+++||||++.++..+...++.++..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 1 26889999999999 6788999999999965 33 269999999999888888777777776655543322
Q ss_pred CCCCceEEEEEEecchhh-hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHH-----H
Q 007879 338 RPSTLTEEVVRIRRMREV-NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL-----E 411 (586)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~-----~ 411 (586)
....+.+. +........ .....+..++ ...++++||||+|+..++.++..|...++ ..+||.|++.+|. .
T Consensus 241 ~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 241 AAKKIVKL-VPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred cccceEEE-EecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHH
Confidence 22233332 221111000 1111122222 23467899999999999999999998776 8999999999999 8
Q ss_pred HHHHHhc----CC-------CcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcc-eEEEEec
Q 007879 412 ALELFRK----QH-------VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG-YAVTFVT 475 (586)
Q Consensus 412 ~~~~f~~----g~-------~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g-~~~~l~~ 475 (586)
+++.|++ |. ..|||||+++++||||+. ++||++..| ...|+||+||+||.|+.| ..+.++.
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 8999987 44 679999999999999986 889988777 689999999999999854 3355553
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.6e-43 Score=383.91 Aligned_cols=333 Identities=20% Similarity=0.201 Sum_probs=256.6
Q ss_pred CCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 131 NLSRPLLRACE-ALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 131 ~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il~g------~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+..+...+. .++|. ||++|..+|+.++++ .|.+++|+||||||.+|+++++..+..+ .+++||+
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g------~qvlvLv 507 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG------KQVAVLV 507 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC------CeEEEEe
Confidence 44555555554 46885 999999999999985 6999999999999999999999887543 4799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH---hc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---LR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
||++||.|+++.+..+....++++..++|+.+....... +. +.++|+|+||..+ .. .+.+.++++|||||
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~--~v~f~~L~llVIDE 581 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QK--DVKFKDLGLLIIDE 581 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hC--CCCcccCCEEEeec
Confidence 999999999999999887778899999988775544332 33 3589999999422 22 46788999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHH
Q 007879 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (586)
Q Consensus 280 ah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (586)
+|++ .......+..++..+|+++||||+.+....+....+.++..+...+.... .+...+... .......
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~--~V~t~v~~~---~~~~i~~ 651 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL--PVRTFVMEY---DPELVRE 651 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc--ceEEEEEec---CHHHHHH
Confidence 9994 23344556667788999999999988776665555556655544332211 233322221 1111111
Q ss_pred HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC
Q 007879 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (586)
Q Consensus 360 ~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 437 (586)
.+...+ ..+++++|||++...++.++..|... ++++..+||.|++.+|..++..|++|+.+|||||+++++|||+|
T Consensus 652 ~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 652 AIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 122222 23678999999999999999999874 78999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC-ChhHHHHHhhhcccCCCcceEEEEeccC------cHHHHHHHHHH
Q 007879 438 GVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 488 (586)
Q Consensus 438 ~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~~~------d~~~~~~i~~~ 488 (586)
++++||+++.|. +...|.||+||+||.|+.|.|++++.+. ....++.+.+.
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 999999999875 6779999999999999999999998653 34555555543
No 47
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-43 Score=360.38 Aligned_cols=327 Identities=23% Similarity=0.315 Sum_probs=260.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+||..+++-|.++|..+++|+|+++.+|||.||++||++|++-. .+.+|||.|..+|.....+.+..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~---- 79 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEA---- 79 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHH----
Confidence 79999999999999999999999999999999999999999854 22599999999998866666665
Q ss_pred CCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC--cHHHHHHHH
Q 007879 223 TDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELV 296 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~--~~~~i~~i~ 296 (586)
.|+.+..+.+..+..+....+ ....++++-+|++|..--... .+.-..+.++||||||++++|| |++.+..+.
T Consensus 80 ~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg 158 (590)
T COG0514 80 AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDYRRLG 158 (590)
T ss_pred cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCHhHHHHH
Confidence 378888888887766654433 334799999999995432111 1224578899999999999998 887777664
Q ss_pred H---HCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceE
Q 007879 297 R---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKV 373 (586)
Q Consensus 297 ~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 373 (586)
. .+| +.+++++|||.++.+...+...+.-...........++ ++...+.... ....+...+.. ......+..
T Consensus 159 ~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~--~~~~q~~fi~~-~~~~~~~~G 233 (590)
T COG0514 159 RLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKG--EPSDQLAFLAT-VLPQLSKSG 233 (590)
T ss_pred HHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcc--cHHHHHHHHHh-hccccCCCe
Confidence 4 444 77899999999999988876655533222222233333 3332222221 11222222221 124456778
Q ss_pred EEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhH
Q 007879 374 IIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTS 453 (586)
Q Consensus 374 lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~ 453 (586)
||||.|++.++.++.+|...|+++..+|++|+..+|..+.++|..++.+|+|||.++++|||.|+|++||||++|.|...
T Consensus 234 IIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~Es 313 (590)
T COG0514 234 IIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIES 313 (590)
T ss_pred EEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 454 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 454 y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
|.|-+|||||.|.+..|++||++.|....+.+.+.
T Consensus 314 YyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 314 YYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999998888877664
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.6e-42 Score=366.06 Aligned_cols=338 Identities=24% Similarity=0.312 Sum_probs=270.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCC--CCCCCeEEEEEcCcHHH
Q 007879 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLILTPTREL 208 (586)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~vlil~Ptr~L 208 (586)
-|++.+.+.+... |..|||.|.+++|.+..|+|+|+.||||||||+++.+|++..++..+ ....+..+|+|+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3788999999888 99999999999999999999999999999999999999999999884 23346899999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC-CcCccCceEEEEeCcccccCCC
Q 007879 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLELG 287 (586)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~ 287 (586)
...+.+.+..+....|+.+.+-+|+++...+.....+.|||+|+||+.|.-++.... .-.|.++.++||||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 999999999999999999999999999999999999999999999999987776531 1247899999999999987543
Q ss_pred ----cHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCC--CeEEeeCCCCCCCCCceEEEEEEecc------hhh
Q 007879 288 ----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRM------REV 355 (586)
Q Consensus 288 ----~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 355 (586)
..-.+..+.+..+ ..|.|++|||..+. ....+..... +..+......+.. .+ .++..... ...
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~-~i--~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKL-EI--KVISPVEDLIYDEELWA 240 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcc-eE--EEEecCCccccccchhH
Confidence 2333455666666 89999999999743 3333333332 3444332222211 11 11111100 111
Q ss_pred hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC-CceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccC
Q 007879 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (586)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~-~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 434 (586)
.....+..+.+. ...+|||+||+..++.+...|+..+ ..+..+||+++.+.|..+.++|++|+.+++|||..++.||
T Consensus 241 ~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 241 ALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 222333333343 3489999999999999999999887 8999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhHHHHHhhhccc-CCCcceEEEEecc
Q 007879 435 DIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAVTFVTD 476 (586)
Q Consensus 435 di~~v~~VI~~~~p~s~~~y~Qr~GR~gR-~g~~g~~~~l~~~ 476 (586)
|+.+++.||+|+.|.++..++||+||+|+ .|....++++...
T Consensus 319 DiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 319 DIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999986 5555666666555
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.3e-42 Score=384.71 Aligned_cols=317 Identities=20% Similarity=0.220 Sum_probs=250.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 135 PLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 135 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
...+....++| .||+.|.++|+.++.+ +|++++|+||+|||.+|+.+++..+.. +.+++||+||++|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~------g~qvlvLvPT~eL 661 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN------HKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc------CCeEEEEeCcHHH
Confidence 44555677888 5999999999999997 899999999999999988888776532 3479999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhc----CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
|.|+++.+.++....++++.+++|+.+...+...+. +.++|+|+||+.+ .. .+.+.++++|||||+|++
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~--~v~~~~L~lLVIDEahrf- 734 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS--DVKWKDLGLLIVDEEHRF- 734 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC--CCCHhhCCEEEEechhhc-
Confidence 999999999876666788888998887766654432 4689999999643 22 456789999999999997
Q ss_pred CCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHH
Q 007879 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL 364 (586)
Q Consensus 285 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (586)
|+. ....+..++..+|+++||||+.+....+....+.++..+...+... ..+......+. ....+...+..+
T Consensus 735 --G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~--~~~~k~~il~el 806 (1147)
T PRK10689 735 --GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYD--SLVVREAILREI 806 (1147)
T ss_pred --chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecC--cHHHHHHHHHHH
Confidence 332 2344567788999999999998888877777777777665533321 12333322221 111222223333
Q ss_pred hhccCCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 365 CSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 365 ~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
. .+++++|||+++..++.++..|... ++.+..+||+|++.+|.+++..|++|+.+|||||+++++|||+|++++|
T Consensus 807 ~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 807 L---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred h---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 2 3578999999999999999999876 7899999999999999999999999999999999999999999999999
Q ss_pred EEeCCC-CChhHHHHHhhhcccCCCcceEEEEecc
Q 007879 443 INYACP-RDLTSYVHRVGRTARAGREGYAVTFVTD 476 (586)
Q Consensus 443 I~~~~p-~s~~~y~Qr~GR~gR~g~~g~~~~l~~~ 476 (586)
|..+.+ .+...|+||+||+||.|+.|.|++++..
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 955443 3566899999999999999999998864
No 50
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.6e-41 Score=381.69 Aligned_cols=283 Identities=22% Similarity=0.251 Sum_probs=220.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|+ .|+++|..++|.++.|+|++++||||+|||. |.++++..+.. .++++|||+||++|+.|+++.+..++..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 477 7999999999999999999999999999996 55666555432 2458999999999999999999999988
Q ss_pred CCceEEEEeCCCCh-----HHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-----------
Q 007879 223 TDIRCCLVVGGLST-----KMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 285 (586)
Q Consensus 223 ~~~~~~~~~~~~~~-----~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~----------- 285 (586)
.++.+..+.|+.+. ......+. ..++|+|+||++|.+++. .+....+++|||||||+++.
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 88888877776542 22223334 468999999999999876 24566799999999999986
Q ss_pred CCcH-HHHHHHHHHCCC------------------------CCcEEEEeecCchh-HHHHHHHhcCCCeEEeeCCCCCCC
Q 007879 286 LGFS-AEIHELVRLCPK------------------------RRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRP 339 (586)
Q Consensus 286 ~~~~-~~i~~i~~~~~~------------------------~~q~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 339 (586)
.||. ..+..++..++. ..|++++|||+++. +.. ..+..+..+.+.......
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccccc
Confidence 5674 567777776654 68999999999874 332 122344444444333344
Q ss_pred CCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHH---HHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHH
Q 007879 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416 (586)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~---~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f 416 (586)
.++.+.++... .+...+..++... +.++||||++... ++.++.+|...|+++..+||++ .+.++.|
T Consensus 304 rnI~~~yi~~~-----~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 304 RNIVDSYIVDE-----DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred CCceEEEEEcc-----cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 45666665432 3444555555544 4689999999777 9999999999999999999999 2346999
Q ss_pred hcCCCcEEEe----cCcccccCCCCC-ccEEEEeCCCC
Q 007879 417 RKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (586)
Q Consensus 417 ~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~~~p~ 449 (586)
++|+++|||| |++++||||+|+ |++||||++|.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999999999 699999999999 89999999996
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.3e-41 Score=366.51 Aligned_cols=315 Identities=22% Similarity=0.261 Sum_probs=235.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 137 LRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 137 ~~~l~~~~~~~~~~~Q~~~i~~il~g------~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
.+....++| .||++|.++++.+..+ .+.|++|+||||||++|++|++..+.. +.+++|++||++||.
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~------g~q~lilaPT~~LA~ 324 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA------GYQAALMAPTEILAE 324 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc------CCeEEEEeccHHHHH
Confidence 334455778 4999999999999986 379999999999999999999988742 447999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEeCCCChHHHHH---Hhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC
Q 007879 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (586)
Q Consensus 211 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 286 (586)
|+++.+.++....++++.+++|+.+...... .+. +.++|+|+||+.+.. .+.+.++++|||||+|++.
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg-- 396 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFG-- 396 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhh--
Confidence 9999999998888999999999988655433 233 359999999987743 3457899999999999963
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh
Q 007879 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366 (586)
Q Consensus 287 ~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 366 (586)
......+......+++++||||+.+....+.......+..+...+.. + ..+...+.... ........+...+
T Consensus 397 ---~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~-r-~~i~~~~~~~~--~~~~~~~~i~~~~- 468 (681)
T PRK10917 397 ---VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG-R-KPITTVVIPDS--RRDEVYERIREEI- 468 (681)
T ss_pred ---HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC-C-CCcEEEEeCcc--cHHHHHHHHHHHH-
Confidence 22233333445568999999998876654443222222222211111 1 12222222111 1111112222222
Q ss_pred ccCCceEEEEeccH--------HHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 367 KTFTSKVIIFSGTK--------QAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 367 ~~~~~~~lIF~~s~--------~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
..+.+++|||+.. ..+..++..|... ++.+..+||.|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 469 -~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 469 -AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred -HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 3467899999954 3455566666544 4789999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCC-ChhHHHHHhhhcccCCCcceEEEEec
Q 007879 437 IGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 437 ~~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
|++++||+++.|. ....|.||+||+||.|.+|.|++++.
T Consensus 548 p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 548 PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999997 57888899999999999999999995
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-41 Score=371.74 Aligned_cols=340 Identities=18% Similarity=0.233 Sum_probs=250.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
.|++++|++.+++.+...+|. |+++|.++++.+..|+++++++|||||||+++.++++..+... .++||++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~------~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG------LKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC------CcEEEEech
Confidence 467899999999999999997 9999999999999999999999999999999999998887542 369999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC
Q 007879 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (586)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 285 (586)
++||.|+++.+.++. ..+.++...+|+...... ....++|+|+||+++..++.+. ...+.++++||+||||.+.+
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccC
Confidence 999999999998764 357888888887654322 2346799999999998887764 34478999999999999987
Q ss_pred CCcHHHHHHHH---HHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEe----cchhhhHH
Q 007879 286 LGFSAEIHELV---RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR----RMREVNQE 358 (586)
Q Consensus 286 ~~~~~~i~~i~---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 358 (586)
.++...+..++ +..+...|+|++|||+++ ...+.. ++..+. + ....++..+........ ........
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~-~---~~~~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL-I---KSNFRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc-c---CCCCCCCCeEEEEEecCeeeecccccccc
Confidence 77666665554 445678899999999975 333333 332221 1 01112222221111100 00000000
Q ss_pred HHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhc-------------------------CCceEEecCCCCHHHHHH
Q 007879 359 AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-------------------------ALKAAELHGNLTQAQRLE 411 (586)
Q Consensus 359 ~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~-------------------------~~~~~~l~~~~~~~~r~~ 411 (586)
.+..++. ...++++||||++++.++.++..|... ...++.+||+|++.+|..
T Consensus 224 -~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 -DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred -cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 0111111 124679999999999999998887542 125788999999999999
Q ss_pred HHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCC---------CCChhHHHHHhhhcccCCC--cceEEEEeccCc-H
Q 007879 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---------PRDLTSYVHRVGRTARAGR--EGYAVTFVTDND-R 479 (586)
Q Consensus 412 ~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~---------p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~d-~ 479 (586)
+++.|++|.++|||||+++++|+|+|+..+|| ++. |.++.+|.||+|||||.|. .|.+++++...+ .
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~ 381 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH
Confidence 99999999999999999999999999865444 432 5588899999999999884 577887765433 3
Q ss_pred HHHHHH
Q 007879 480 SLLKAI 485 (586)
Q Consensus 480 ~~~~~i 485 (586)
..++.+
T Consensus 382 ~~~~~~ 387 (674)
T PRK01172 382 DAAKKY 387 (674)
T ss_pred HHHHHH
Confidence 444443
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7.1e-41 Score=376.92 Aligned_cols=302 Identities=22% Similarity=0.317 Sum_probs=225.3
Q ss_pred EEcCCCchhHHHhhhhhHHHHhcCCC-------CCCCeEEEEEcCcHHHHHHHHHHHHHHh------------hcCCceE
Q 007879 167 GSAITGSGKTAAFALPTLERLLYRPK-------RIPAIRVLILTPTRELAVQVHSMIEKIA------------QFTDIRC 227 (586)
Q Consensus 167 v~~~TGsGKT~~~~l~~l~~l~~~~~-------~~~~~~vlil~Ptr~La~Q~~~~~~~l~------------~~~~~~~ 227 (586)
|++|||||||++|.||++..++.... ...++++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431 1235799999999999999999886421 1247899
Q ss_pred EEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC--C--cHHHHHHHHHHCCCCC
Q 007879 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL--G--FSAEIHELVRLCPKRR 303 (586)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~--~--~~~~i~~i~~~~~~~~ 303 (586)
...+|+.+...+...+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+. | +...+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999988887788889999999999988876543345899999999999999864 3 3455667777788889
Q ss_pred cEEEEeecCchhHHHHHHHhc-CCCeEEeeCCCCCCCCCceEEEEEEecchh----------------h-h-HHHHHHHH
Q 007879 304 QTMLFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTEEVVRIRRMRE----------------V-N-QEAVLLSL 364 (586)
Q Consensus 304 q~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~-~~~~l~~~ 364 (586)
|+|++|||+++ ..++..... ..++.+.. ........+.. ++....... . . .......+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999986 344443322 23554432 22222222221 111111000 0 0 00011111
Q ss_pred hh-ccCCceEEEEeccHHHHHHHHHHHhhcC---------------------------------CceEEecCCCCHHHHH
Q 007879 365 CS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------------------LKAAELHGNLTQAQRL 410 (586)
Q Consensus 365 ~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~---------------------------------~~~~~l~~~~~~~~r~ 410 (586)
+. ...+.++||||||+..|+.+...|+... +.+..+||++++.+|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 11 1235789999999999999999887531 1257899999999999
Q ss_pred HHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccC-CCcceEE
Q 007879 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAV 471 (586)
Q Consensus 411 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~-g~~g~~~ 471 (586)
.+++.|++|++++||||+.+++||||++|++||+|+.|.+..+|+||+||+||. |..+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999999995 3334444
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.1e-40 Score=360.25 Aligned_cols=317 Identities=21% Similarity=0.245 Sum_probs=234.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 135 PLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 135 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
.+.+.+..++| .||++|.++++.++.+ .+.+++|+||||||++|++|++..+.. +.+++|++||++|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~------g~qvlilaPT~~L 296 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA------GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc------CCcEEEECCHHHH
Confidence 34566778899 5999999999999886 257999999999999999999988743 3469999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH---h-cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---L-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
|.|+++.+.+++...++++.+++|+.+....... + .+.++|+|+||+.+.. .+.+.++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 9999999999988889999999999877654332 2 3458999999987753 3557899999999999863
Q ss_pred CCCcHHHHHHHHHHCC--CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 285 ELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 285 ~~~~~~~i~~i~~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
.. ....+..... ..+++++||||+.+....+..........+...+.. + ..+....+.. ......+.
T Consensus 371 ~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~-r-~~i~~~~~~~-----~~~~~~~~ 439 (630)
T TIGR00643 371 VE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG-R-KPITTVLIKH-----DEKDIVYE 439 (630)
T ss_pred HH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC-C-CceEEEEeCc-----chHHHHHH
Confidence 21 1222333332 267899999998775544332111111111111111 1 1122222211 11122222
Q ss_pred HHhhc-cCCceEEEEeccH--------HHHHHHHHHHhh--cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccc
Q 007879 363 SLCSK-TFTSKVIIFSGTK--------QAAHRLKILFGL--AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (586)
Q Consensus 363 ~~~~~-~~~~~~lIF~~s~--------~~~~~l~~~l~~--~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 431 (586)
.+... ..+.+++|||+.. ..+..++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 22221 2467899999875 445566666654 378899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCCCC-ChhHHHHHhhhcccCCCcceEEEEec
Q 007879 432 RGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 432 ~Gldi~~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
+|+|+|++++||+++.|. +...|.||+||+||.|++|.|++++.
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999986 67888999999999999999999983
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.9e-41 Score=357.77 Aligned_cols=320 Identities=19% Similarity=0.184 Sum_probs=234.3
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCchhHHH---------hhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 150 PIQAACIPLALTGRDICGSAITGSGKTAA---------FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 150 ~~Q~~~i~~il~g~~~lv~~~TGsGKT~~---------~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
.+|.++++.++.|+++|++|+||||||.+ |++|.+..+..-.......+++|++|||+||.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999987 334444443211111234589999999999999999887755
Q ss_pred hc---CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHH
Q 007879 221 QF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (586)
Q Consensus 221 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~ 297 (586)
.+ .+..+.+.+|+... ..........+|+|+|++.. ...+.++++|||||||++...+ ..+..+++
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred CccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHHH
Confidence 44 46778888999773 22222334679999997521 1247889999999999988754 34444444
Q ss_pred HC-CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecc-------hhhhHHHHHHHHhhc--
Q 007879 298 LC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-------REVNQEAVLLSLCSK-- 367 (586)
Q Consensus 298 ~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~-- 367 (586)
.. +..+|+++||||++.++..+ ..++.+|..+.+... ....+.+.++..... ....+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 33 34469999999999887766 567777877766421 223445544332110 011122222222221
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHH-hcCCCcEEEecCcccccCCCCCccEEEE
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELF-RKQHVDFLIATDVAARGLDIIGVQTVIN 444 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f-~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 444 (586)
..++.+||||++...++.+...|... ++.+..+||.+++. .++++.| ++|+.+|||||++++||||||+|++||+
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 23568999999999999999999876 79999999999975 4666777 6899999999999999999999999999
Q ss_pred eC---CCC---------ChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHH
Q 007879 445 YA---CPR---------DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 445 ~~---~p~---------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~ 486 (586)
+| .|. |..+|.||+|||||. ++|.|+.|++..+...+.++.
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 98 565 888999999999999 799999999987754454444
No 56
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.3e-40 Score=342.20 Aligned_cols=321 Identities=23% Similarity=0.229 Sum_probs=248.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|. .|+++|..+++.++.|+ |+.+.||+|||++|.+|++...+. +..|+|++||++||.|.++++..++.+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~------G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA------GLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc------CCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 465 59999999999999999 999999999999999999988653 346999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCc------------------------CccCceEEEE
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV------------------------DLDDLAVLIL 277 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~------------------------~l~~~~~lVi 277 (586)
.++++++++|+.+.. ......++||+|+|...| +++|+.+... -...+.++||
T Consensus 171 lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 171 LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 999999999997654 344456789999999988 6777654221 1356789999
Q ss_pred eCccccc-C--------------C---CcHHHHHHHHHHC--------------------------------C-------
Q 007879 278 DEADRLL-E--------------L---GFSAEIHELVRLC--------------------------------P------- 300 (586)
Q Consensus 278 DEah~l~-~--------------~---~~~~~i~~i~~~~--------------------------------~------- 300 (586)
||+|.++ + . .+...+..+...+ +
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999854 1 0 0000011110000 0
Q ss_pred ------------------------------------------------------------------------------CC
Q 007879 301 ------------------------------------------------------------------------------KR 302 (586)
Q Consensus 301 ------------------------------------------------------------------------------~~ 302 (586)
..
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 01
Q ss_pred CcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhcc--CCceEEEEeccH
Q 007879 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT--FTSKVIIFSGTK 380 (586)
Q Consensus 303 ~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIF~~s~ 380 (586)
.++.+||||++....++...+..+++.+.......+. ..+.++.. ....+...+...+... .+.++||||+|+
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~---t~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFL---TAAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEe---CHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 2678999999988888888888887776654433221 22222222 2344555666666432 357899999999
Q ss_pred HHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC---Ccc-----EEEEeCCCCChh
Q 007879 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLT 452 (586)
Q Consensus 381 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~~~p~s~~ 452 (586)
..++.++..|...|+++..+||.+. +|.+.+..|..+...|+|||++++||+||+ +|. +||+|++|.|..
T Consensus 484 ~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r 561 (656)
T PRK12898 484 AASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSAR 561 (656)
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHH
Confidence 9999999999999999999999864 555666667666678999999999999999 676 999999999999
Q ss_pred HHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 453 SYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 453 ~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
.|+||+|||||.|.+|.+++|++..|.-+
T Consensus 562 ~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 562 IDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 99999999999999999999999877444
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.2e-40 Score=358.30 Aligned_cols=310 Identities=17% Similarity=0.221 Sum_probs=236.6
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH-HHhhcCCceEE
Q 007879 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE-KIAQFTDIRCC 228 (586)
Q Consensus 150 ~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~-~l~~~~~~~~~ 228 (586)
.+-.+++..+..++++|++|+||||||++|.+++++... .+++++|++|||++|.|+++.+. .+....+..++
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 344566777778899999999999999999999988752 23479999999999999999885 44444566677
Q ss_pred EEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc-ccCCCcHH-HHHHHHHHCCCCCcEE
Q 007879 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFSA-EIHELVRLCPKRRQTM 306 (586)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~-l~~~~~~~-~i~~i~~~~~~~~q~i 306 (586)
+..++.. .....++|+|+|||+|++.+.+ ...++++++|||||+|. +++.++.. .+..+...++...|+|
T Consensus 79 y~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 79 YRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 6665432 2345679999999999999876 45689999999999994 77766543 3455666778899999
Q ss_pred EEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhh--hHHHHHHHHhhccCCceEEEEeccHHHHH
Q 007879 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV--NQEAVLLSLCSKTFTSKVIIFSGTKQAAH 384 (586)
Q Consensus 307 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~lIF~~s~~~~~ 384 (586)
+||||++... +..++.++..+..... ...+.+.+......... .....+..++.. ..+.+|||+++..+++
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIR 223 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHH
Confidence 9999998654 3455555444443221 12233433332211110 011223333332 3578999999999999
Q ss_pred HHHHHHhh---cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCC------------
Q 007879 385 RLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------ 449 (586)
Q Consensus 385 ~l~~~l~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~------------ 449 (586)
.+...|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||++++|.
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~ 303 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITR 303 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCce
Confidence 99999986 478999999999999999999999999999999999999999999999999999885
Q ss_pred ------ChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 450 ------DLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 450 ------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
|..+|.||+|||||. ++|.||.|++..+...
T Consensus 304 L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 304 LETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred eeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 334689999999998 6999999999876443
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.1e-39 Score=373.84 Aligned_cols=293 Identities=20% Similarity=0.253 Sum_probs=222.6
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 007879 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (586)
Q Consensus 135 ~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~ 213 (586)
.+.+.++. +|| .|+++|+.++|.++.|+|+++.||||+|||++++++++.... .+.++|||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHH
Confidence 44555555 799 599999999999999999999999999999965555543321 2347999999999999999
Q ss_pred HHHHHHhhcC--CceEEEEeCCCChHHHHH---Hhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-
Q 007879 214 SMIEKIAQFT--DIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL- 286 (586)
Q Consensus 214 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~---~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~- 286 (586)
+.+..++... ++++..++|+.+...+.. .+. +.++|+|+||++|.+++... . ..+++++||||||+|+.|
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceeccccc
Confidence 9999988765 466778889988766533 233 35899999999998876542 2 267999999999999874
Q ss_pred ----------CcHHHHHH----HHH----------------------HCCCCCc-EEEEeecCchhHHHHHHHhcCCCeE
Q 007879 287 ----------GFSAEIHE----LVR----------------------LCPKRRQ-TMLFSATLTEDVDELIKLSLTKPLR 329 (586)
Q Consensus 287 ----------~~~~~i~~----i~~----------------------~~~~~~q-~i~~SAT~~~~~~~~~~~~~~~~~~ 329 (586)
||...+.. +++ .+++.+| ++++|||+++... ....+..+..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeE
Confidence 67666653 321 2345556 5779999986311 1123456666
Q ss_pred EeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHH---HHHHHHHHhhcCCceEEecCCCCH
Q 007879 330 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQ 406 (586)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~---~~~l~~~l~~~~~~~~~l~~~~~~ 406 (586)
+.+.........+.+.++.... ..+ ..+..++... +.++||||+++.. ++.++..|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~---~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK---IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH---HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 6665554444556666554321 112 3455555544 5689999999875 589999999999999999994
Q ss_pred HHHHHHHHHHhcCCCcEEEec----CcccccCCCCC-ccEEEEeCCCC
Q 007879 407 AQRLEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACPR 449 (586)
Q Consensus 407 ~~r~~~~~~f~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~~~p~ 449 (586)
|..+++.|++|+.+||||| ++++||||+|+ |++|||||+|.
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk 412 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPK 412 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCC
Confidence 8899999999999999999 58999999999 99999999998
No 59
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-38 Score=340.35 Aligned_cols=321 Identities=19% Similarity=0.216 Sum_probs=242.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+.+ ..|+|++||+.||.|.++++..+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G------~~v~VvTpt~~LA~qd~e~~~~l~~~ 145 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG------KGVHLITVNDYLAKRDAEEMGQVYEF 145 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC------CCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 466 69999999999998887 9999999999999999998766543 35999999999999999999999999
Q ss_pred CCceEEEEeCCCC-hHHHHHHhcCCCcEEEECcHHH-HHHHHhcCC-----cCccCceEEEEeCccccc-C---------
Q 007879 223 TDIRCCLVVGGLS-TKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-E--------- 285 (586)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~-----~~l~~~~~lViDEah~l~-~--------- 285 (586)
.|++++++.|+.+ ..... ....++|+|+||++| .++|+.... ..+..+.++||||||.|+ +
T Consensus 146 lGl~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred cCCeEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 9999999999988 44333 234589999999999 666665321 346789999999999965 1
Q ss_pred ------CCcHHHHHHHHHHCC-----------------------------------------------------------
Q 007879 286 ------LGFSAEIHELVRLCP----------------------------------------------------------- 300 (586)
Q Consensus 286 ------~~~~~~i~~i~~~~~----------------------------------------------------------- 300 (586)
..+...+..+...+.
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 001111111111000
Q ss_pred ----------------------------------------------------------CCCcEEEEeecCchhHHHHHHH
Q 007879 301 ----------------------------------------------------------KRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 301 ----------------------------------------------------------~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
...++.+||+|....-.++...
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~ 383 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEV 383 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHH
Confidence 0125678888887666666665
Q ss_pred hcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceEEe
Q 007879 323 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (586)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l 400 (586)
+.-..+.+.......+ .......+. ....+...+...+.. ..+.++||||+|...++.++..|...|+++..+
T Consensus 384 Y~l~v~~IPt~kp~~r---~d~~~~i~~--~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 384 YNMEVVQIPTNRPIIR---IDYPDKVFV--TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred hCCcEEECCCCCCccc---ccCCCeEEc--CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5443333322211111 111111111 234455666665543 357899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC---CCcc-----EEEEeCCCCChhHHHHHhhhcccCCCcceEEE
Q 007879 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI---IGVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAVT 472 (586)
Q Consensus 401 ~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi---~~v~-----~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~ 472 (586)
||.+.+.++..+...+..| .|+|||++++||+|| ++|. +||+|++|.|...|+||+|||||.|.+|.+++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 9999988888777777666 799999999999999 6998 99999999999999999999999999999999
Q ss_pred EeccCcHHH
Q 007879 473 FVTDNDRSL 481 (586)
Q Consensus 473 l~~~~d~~~ 481 (586)
|++..|.-+
T Consensus 537 ~is~eD~l~ 545 (790)
T PRK09200 537 FISLEDDLL 545 (790)
T ss_pred EEcchHHHH
Confidence 999876443
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.7e-40 Score=356.43 Aligned_cols=308 Identities=17% Similarity=0.222 Sum_probs=234.3
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceEE
Q 007879 150 PIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCC 228 (586)
Q Consensus 150 ~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~-l~~~~~~~~~ 228 (586)
.+-.+++..+.+++++++.|+||||||++|.+++++... ..++++|++|||++|.|+++.+.. +....+..++
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 344566777778899999999999999999999887632 124799999999999999998854 4445677788
Q ss_pred EEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc-ccCCCc-HHHHHHHHHHCCCCCcEE
Q 007879 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGF-SAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~-l~~~~~-~~~i~~i~~~~~~~~q~i 306 (586)
+.+++.+. ....++|+|+|||+|++++.. ...++++++|||||+|. .++.++ ...+..++..++...|+|
T Consensus 82 y~vr~~~~------~~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 82 YRMRAESK------VGPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEecCccc------cCCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 77776432 234568999999999998876 45789999999999997 455443 233455667778889999
Q ss_pred EEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhH--HHHHHHHhhccCCceEEEEeccHHHHH
Q 007879 307 LFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ--EAVLLSLCSKTFTSKVIIFSGTKQAAH 384 (586)
Q Consensus 307 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~lIF~~s~~~~~ 384 (586)
+||||++... +..++.++..+..... ...+.+.+........... ...+..++.. ..+.+||||++..+++
T Consensus 154 lmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 154 IMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQ 226 (812)
T ss_pred EEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHH
Confidence 9999998652 2455555444443221 1234444433321111100 1123333332 3688999999999999
Q ss_pred HHHHHHhh---cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCC-----------
Q 007879 385 RLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD----------- 450 (586)
Q Consensus 385 ~l~~~l~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s----------- 450 (586)
.+...|.. .++.+..+||.+++.+|..++..|++|+.+|||||+++++||||++|++||+++.+..
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999986 5788999999999999999999999999999999999999999999999999887753
Q ss_pred -------hhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 451 -------LTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 451 -------~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
..+|.||+|||||. ++|.||.|++..+.
T Consensus 307 L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred eEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35899999999998 59999999987654
No 61
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.1e-39 Score=362.07 Aligned_cols=292 Identities=23% Similarity=0.285 Sum_probs=218.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 007879 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (586)
Q Consensus 135 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~ 214 (586)
++.+.+.......|+++|+.+++.++.|++++++||||+|||+ |.+|++..+... ++++|||+||++||.|+++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-----g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-----GKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-----CCeEEEEeCHHHHHHHHHH
Confidence 3444455434447999999999999999999999999999997 667777665432 4589999999999999999
Q ss_pred HHHHHhhcCCceEE---EEeCCCChHHHHH---Hhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC--
Q 007879 215 MIEKIAQFTDIRCC---LVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-- 285 (586)
Q Consensus 215 ~~~~l~~~~~~~~~---~~~~~~~~~~~~~---~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-- 285 (586)
.+..++...++.+. +++|+.+...+.. .+. ++++|+|+||++|.+++... .. +++++||||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhcc
Confidence 99999887766543 4678887665432 233 45999999999999887652 12 899999999999997
Q ss_pred ---------CCcHHH-HHHH----------------------HHHCCCCCc--EEEEeecC-chhHHHHHHHhcCCCeEE
Q 007879 286 ---------LGFSAE-IHEL----------------------VRLCPKRRQ--TMLFSATL-TEDVDELIKLSLTKPLRL 330 (586)
Q Consensus 286 ---------~~~~~~-i~~i----------------------~~~~~~~~q--~i~~SAT~-~~~~~~~~~~~~~~~~~~ 330 (586)
.||... +..+ ++.+++.+| ++++|||+ +..+.. ..+..++.+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 567653 3333 223455555 56789994 443332 234445455
Q ss_pred eeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccH---HHHHHHHHHHhhcCCceEEecCCCCHH
Q 007879 331 SADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK---QAAHRLKILFGLAALKAAELHGNLTQA 407 (586)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~---~~~~~l~~~l~~~~~~~~~l~~~~~~~ 407 (586)
.+.........+.+.++.... +...+..++... +.++||||++. +.++.++..|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~-----~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED-----LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc-----HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 554443334455555543221 123344555443 56899999999 99999999999999999999999973
Q ss_pred HHHHHHHHHhcCCCcEEEe----cCcccccCCCCC-ccEEEEeCCCC
Q 007879 408 QRLEALELFRKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (586)
Q Consensus 408 ~r~~~~~~f~~g~~~vLva----T~~~~~Gldi~~-v~~VI~~~~p~ 449 (586)
.+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999884
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-38 Score=311.86 Aligned_cols=325 Identities=25% Similarity=0.349 Sum_probs=241.9
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~ 225 (586)
-.++.||..+...++.+ |.|++.|||.|||+++++.+...+...++ ++|+|+||+.|+.|.++.|.+....+.-
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-----kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-----KVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC-----eEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 35889999998888776 89999999999999988888777755432 7999999999999999999998877778
Q ss_pred eEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc-CCCcHHHHHHHHHHCCCCCc
Q 007879 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQ 304 (586)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~q 304 (586)
.++.++|...+..+...+. ..+|+|+||+.+.+-|..+ .+++.++.++|+||||+-. +..|.......++. .+++.
T Consensus 88 ~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~G-rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~ 164 (542)
T COG1111 88 EIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAG-RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPL 164 (542)
T ss_pred heeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcC-ccChHHceEEEechhhhccCcchHHHHHHHHHHh-ccCce
Confidence 8899999998887666554 4699999999999988876 6889999999999999865 44444444444443 45677
Q ss_pred EEEEeecCchhHHHHH---HHhcCCCeEEeeCCCCCCCC---CceEEEEEEe----------------------------
Q 007879 305 TMLFSATLTEDVDELI---KLSLTKPLRLSADPSAKRPS---TLTEEVVRIR---------------------------- 350 (586)
Q Consensus 305 ~i~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---------------------------- 350 (586)
++++||||..+..... ....-..+.+.........+ ...-.++.+.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999987655442 21111111111111000000 0000000000
Q ss_pred -----------------------cchhhh---------------------------------------------------
Q 007879 351 -----------------------RMREVN--------------------------------------------------- 356 (586)
Q Consensus 351 -----------------------~~~~~~--------------------------------------------------- 356 (586)
......
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 000000
Q ss_pred ------------------------HHH----HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceE-Ee-------
Q 007879 357 ------------------------QEA----VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-EL------- 400 (586)
Q Consensus 357 ------------------------~~~----~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~-~l------- 400 (586)
+.. .+...+....+.++|||++.+.+++.+.++|...+..+. .+
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 000 001112234457899999999999999999999888774 22
Q ss_pred -cCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 401 -HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 401 -~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
..+|+|.++..+++.|++|.++|||||+++++|||||.|+.||+|++-.|+..++||.|||||. ++|.+++|++.+++
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 3579999999999999999999999999999999999999999999999999999999999995 79999999999854
Q ss_pred H
Q 007879 480 S 480 (586)
Q Consensus 480 ~ 480 (586)
.
T Consensus 484 d 484 (542)
T COG1111 484 D 484 (542)
T ss_pred H
Confidence 3
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.9e-38 Score=333.03 Aligned_cols=321 Identities=19% Similarity=0.202 Sum_probs=246.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. +|+++|..+.+.++.|+ |+.++||+|||++|.+|++...+.+. .|+|++||+.||.|.++++..+..+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~------~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK------GVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC------CEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 465 59999999999888887 99999999999999999965444322 4999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcC-----CcCccCceEEEEeCcccccC---------CC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLLE---------LG 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~l~~~~~lViDEah~l~~---------~~ 287 (586)
.|++++++.|+.+...+...+ .++|+|+||++| +++++.+. .+.++.+.++||||+|+++- .|
T Consensus 124 LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 124 LGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred CCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 999999999998876555444 479999999999 99998753 24578899999999999641 00
Q ss_pred ----c---HHHHHHHHHHC-------------------------------------------------------------
Q 007879 288 ----F---SAEIHELVRLC------------------------------------------------------------- 299 (586)
Q Consensus 288 ----~---~~~i~~i~~~~------------------------------------------------------------- 299 (586)
. ......+.+.+
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 0 00000000000
Q ss_pred --------------------------------------------------------CCCCcEEEEeecCchhHHHHHHHh
Q 007879 300 --------------------------------------------------------PKRRQTMLFSATLTEDVDELIKLS 323 (586)
Q Consensus 300 --------------------------------------------------------~~~~q~i~~SAT~~~~~~~~~~~~ 323 (586)
....++.+||+|......++...+
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 001356789999877777777666
Q ss_pred cCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHh--hccCCceEEEEeccHHHHHHHHHHHhhcCCceEEec
Q 007879 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (586)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~ 401 (586)
--..+.+.......+.. .....+. ....+...+...+ ....+.++||||+|...++.++..|...|+++..+|
T Consensus 362 ~l~vv~IPtnkp~~R~d---~~d~i~~--t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Ln 436 (745)
T TIGR00963 362 NLEVVVVPTNRPVIRKD---LSDLVYK--TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLN 436 (745)
T ss_pred CCCEEEeCCCCCeeeee---CCCeEEc--CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEee
Confidence 55444433322221111 1111121 1233444444433 244588999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCC-------ccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEe
Q 007879 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG-------VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474 (586)
Q Consensus 402 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~-------v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~ 474 (586)
+. +.+|...+..|..+...|+|||++|+||+||+. ..+||++++|.|...|.|++||+||.|.+|.+..|+
T Consensus 437 a~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~l 514 (745)
T TIGR00963 437 AK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFL 514 (745)
T ss_pred CC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEE
Confidence 98 889999999999999999999999999999988 559999999999999999999999999999999999
Q ss_pred ccCcHHH
Q 007879 475 TDNDRSL 481 (586)
Q Consensus 475 ~~~d~~~ 481 (586)
+..|.-+
T Consensus 515 s~eD~l~ 521 (745)
T TIGR00963 515 SLEDNLM 521 (745)
T ss_pred eccHHHH
Confidence 9987544
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.8e-38 Score=331.61 Aligned_cols=322 Identities=18% Similarity=0.152 Sum_probs=231.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|. .|+++|...+..+. ++.|+.++||+|||++|++|++...+.+ ..|+|++|+++||.|+++++..++.+
T Consensus 67 lgl-rpydVQlig~l~l~--~G~Iaem~TGeGKTLta~Lpa~l~aL~g------~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLH--QGNIAEMKTGEGKTLTATMPLYLNALTG------KGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred cCC-CccHHHHHHHHHhc--CCceeEecCCcchHHHHHHHHHHHhhcC------CceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 344 45555555555444 4479999999999999999988776543 24999999999999999999999999
Q ss_pred CCceEEEEeCCCC---hHHHHHHhcCCCcEEEECcHHH-HHHHHhc-----CCcCccCceEEEEeCcccccCC-------
Q 007879 223 TDIRCCLVVGGLS---TKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLLEL------- 286 (586)
Q Consensus 223 ~~~~~~~~~~~~~---~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~-----~~~~l~~~~~lViDEah~l~~~------- 286 (586)
.|+++++++++.. ..........+++|+|+||++| .+++... ....+..+.++||||||.|+-.
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 9999998877521 2222233345799999999999 6666542 1234678999999999996410
Q ss_pred --C-------cHHHHHHHHHHC----------------------------------------------------------
Q 007879 287 --G-------FSAEIHELVRLC---------------------------------------------------------- 299 (586)
Q Consensus 287 --~-------~~~~i~~i~~~~---------------------------------------------------------- 299 (586)
| +...+..+...+
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 0 001111111100
Q ss_pred -----------------------------------------------------------CCCCcEEEEeecCchhHHHHH
Q 007879 300 -----------------------------------------------------------PKRRQTMLFSATLTEDVDELI 320 (586)
Q Consensus 300 -----------------------------------------------------------~~~~q~i~~SAT~~~~~~~~~ 320 (586)
....++.+||+|......++.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 001367889999877667776
Q ss_pred HHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceE
Q 007879 321 KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAA 398 (586)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~ 398 (586)
..+--..+.+.......+. ...-..+. ....+...+...+.. ..+.++||||+|+..++.+...|...|+++.
T Consensus 378 ~iY~l~v~~IPt~kp~~r~---d~~d~i~~--~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~ 452 (762)
T TIGR03714 378 ETYSLSVVKIPTNKPIIRI---DYPDKIYA--TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHN 452 (762)
T ss_pred HHhCCCEEEcCCCCCeeee---eCCCeEEE--CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEE
Confidence 6554333333222111111 11111111 234455556665543 4578999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC---------CccEEEEeCCCCChhHHHHHhhhcccCCCcce
Q 007879 399 ELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---------GVQTVINYACPRDLTSYVHRVGRTARAGREGY 469 (586)
Q Consensus 399 ~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~---------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~ 469 (586)
.+||.+.+.++..+...|+.| .|+|||++++||+||+ ++.+|++|++|..... +||+|||||+|.+|.
T Consensus 453 ~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 453 LLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred EecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCcee
Confidence 999999998887777766666 7999999999999999 9999999999988766 999999999999999
Q ss_pred EEEEeccCcHHH
Q 007879 470 AVTFVTDNDRSL 481 (586)
Q Consensus 470 ~~~l~~~~d~~~ 481 (586)
+++|++..|.-+
T Consensus 530 s~~~is~eD~l~ 541 (762)
T TIGR03714 530 SQFFVSLEDDLI 541 (762)
T ss_pred EEEEEccchhhh
Confidence 999999876443
No 65
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.3e-40 Score=312.73 Aligned_cols=283 Identities=34% Similarity=0.497 Sum_probs=225.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhc---CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 195 PAIRVLILTPTRELAVQVHSMIEKIAQF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 195 ~~~~vlil~Ptr~La~Q~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.+.++|+-|.|+|+.|.++.++++-.+ +.++..++.||.....+...+..+.+|+|+||+||...+..+ .+.+..
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g-~~~lt~ 363 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG-LVTLTH 363 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc-ceeeee
Confidence 3578999999999999999988776544 346667888998888899999999999999999999988775 567889
Q ss_pred ceEEEEeCcccccCCCcHHHHHHHHHHCCC------CCcEEEEeecCch-hHHHHHHHhcCCCeEEeeCCCCCCCCCceE
Q 007879 272 LAVLILDEADRLLELGFSAEIHELVRLCPK------RRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTE 344 (586)
Q Consensus 272 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~------~~q~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (586)
..++|+|||+.++..++...|..+...+|+ ..|.++.|||+.- ++..+....++-|..+........+....+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999999999888777763 5789999999863 344444556666766665555444444433
Q ss_pred EEEEEecc-------------------------------hhhhHHHHH-----HHHhhccCCceEEEEeccHHHHHHHHH
Q 007879 345 EVVRIRRM-------------------------------REVNQEAVL-----LSLCSKTFTSKVIIFSGTKQAAHRLKI 388 (586)
Q Consensus 345 ~~~~~~~~-------------------------------~~~~~~~~l-----~~~~~~~~~~~~lIF~~s~~~~~~l~~ 388 (586)
....+... .......++ +...++..-.+.||||.|+..|+.|.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 33222110 000000000 111223335689999999999999999
Q ss_pred HHhhcC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCC
Q 007879 389 LFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (586)
Q Consensus 389 ~l~~~~---~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 465 (586)
+|+..| ++|.++||+..+.+|...++.|+.+.+++||||++++|||||.++-+|||..+|.....|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998774 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeccCc
Q 007879 466 REGYAVTFVTDND 478 (586)
Q Consensus 466 ~~g~~~~l~~~~d 478 (586)
+-|.++.++...-
T Consensus 604 rmglaislvat~~ 616 (725)
T KOG0349|consen 604 RMGLAISLVATVP 616 (725)
T ss_pred hcceeEEEeeccc
Confidence 9999999885443
No 66
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.6e-39 Score=304.85 Aligned_cols=334 Identities=22% Similarity=0.339 Sum_probs=254.9
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 007879 135 PLLRACEA-LGYSKP-TPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (586)
Q Consensus 135 ~l~~~l~~-~~~~~~-~~~Q~~~i~~il~g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q 211 (586)
.+.++|+. +|+.++ ++.|..++..+..+ +|+.|++|||+||+++|+||+|.+ ++-+||+.|..+|...
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------GGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------CCeEEEehHHHHHHHH
Confidence 45666655 677665 78999999998876 699999999999999999999866 2258999999999886
Q ss_pred HHHHHHHHhhcCCceEEEEeCCCChHHHHHHh------cCCCcEEEECcHHHH-----HHHHhcCCcCccCceEEEEeCc
Q 007879 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL------RSMPDIVVATPGRMI-----DHLRNSMSVDLDDLAVLILDEA 280 (586)
Q Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Ili~Tp~~l~-----~~l~~~~~~~l~~~~~lViDEa 280 (586)
..+-+..+ .+++..+.+..+..++.+.+ +....+++.||++-. ..|.. ..+-..+.++|||||
T Consensus 77 QiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 77 QIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechh
Confidence 66666654 56666666666655554332 345689999998742 22222 122345889999999
Q ss_pred ccccCCC--cHHHHHHHHHH--CCCCCcEEEEeecCchhHHHHH--HHhcCCCeEEeeCCCCCCCCCceEEEEEEe-cch
Q 007879 281 DRLLELG--FSAEIHELVRL--CPKRRQTMLFSATLTEDVDELI--KLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR 353 (586)
Q Consensus 281 h~l~~~~--~~~~i~~i~~~--~~~~~q~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 353 (586)
|+..+|| |++.+..+-.+ .-.....+.+|||.++.+.+.+ .+.+++|+.+...+..... + |+.+. ...
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N--L---FYD~~~K~~ 225 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN--L---FYDNHMKSF 225 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh--h---hHHHHHHHH
Confidence 9999998 66666555332 2345678999999999998865 4567788776543332211 1 11000 000
Q ss_pred hhhHHHHHHHHhh-------------ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC
Q 007879 354 EVNQEAVLLSLCS-------------KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (586)
Q Consensus 354 ~~~~~~~l~~~~~-------------~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 420 (586)
..+....|..+.. +...+..||||.|+..|++++-.|...|+.+..+|+++...+|..+.+.|.+|+
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 1112222333322 223467899999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 421 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
+.|++||..+++|+|-|+|++|||+++|.|...|.|-.|||||.|.+.+|.++|+..|+..+..+...
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888877653
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.8e-37 Score=327.18 Aligned_cols=303 Identities=15% Similarity=0.131 Sum_probs=216.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 007879 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~ 224 (586)
...|+++|.++++.++.++++++++|||+|||+++.. +...+.... .+++|||+||++|+.||.+.+.++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~----~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENY----EGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcC----CCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 3479999999999999999999999999999987543 222222222 23799999999999999999998765544
Q ss_pred ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCc
Q 007879 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q 304 (586)
..+..+.+|.... ...+|+|+||++|...... .+.++++||+||||++.... +..++..+++.++
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccchh----HHHHHHhhhccce
Confidence 4554555554321 3469999999999764322 36789999999999997643 4566666777789
Q ss_pred EEEEeecCchhHHHHH--HHhcCCCeEEeeCCCC----CCCCCceEEEEEEe--cc------------------hhhhHH
Q 007879 305 TMLFSATLTEDVDELI--KLSLTKPLRLSADPSA----KRPSTLTEEVVRIR--RM------------------REVNQE 358 (586)
Q Consensus 305 ~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~------------------~~~~~~ 358 (586)
+++||||+........ ...+. |+...+.... .....+....+... .. ....+.
T Consensus 252 ~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn 330 (501)
T PHA02558 252 KFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRN 330 (501)
T ss_pred EEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHH
Confidence 9999999975332111 11222 2222111000 00000000000000 00 001111
Q ss_pred HHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEec-CcccccCC
Q 007879 359 AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLD 435 (586)
Q Consensus 359 ~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gld 435 (586)
..+..+.. ...+.++||||.+.++++.|+..|+..+.++..+||++++.+|..+++.|++|...||||| +++++|+|
T Consensus 331 ~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 331 KWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 22222221 1235789999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCccEEEEeCCCCChhHHHHHhhhcccCCCcc
Q 007879 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468 (586)
Q Consensus 436 i~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g 468 (586)
+|++++||++.++.+...|+||+||++|.+..+
T Consensus 411 ip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 411 IKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999999999999999999999999999977543
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=305.41 Aligned_cols=337 Identities=24% Similarity=0.297 Sum_probs=269.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
...+|.+++++.+.++..|+..+.|+|..++.. ++.|.|.++..+|+||||++.-++-+..++..++ +.|+|+|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~-----KmlfLvP 269 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK-----KMLFLVP 269 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC-----eEEEEeh
Confidence 456889999999999999999999999999976 6789999999999999999999998888887544 6999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH----HHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCc
Q 007879 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 280 (586)
..+||+|-++.|+.-....++.+.+-+|-....... ......+||||+|++.+-.+++.+ ..+.++..|||||+
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEi 347 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEI 347 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeeee
Confidence 999999999999987788899888888765544432 122345799999999998888774 56899999999999
Q ss_pred ccccCCCcHHHH---HHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhH
Q 007879 281 DRLLELGFSAEI---HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (586)
Q Consensus 281 h~l~~~~~~~~i---~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (586)
|.+-+......+ ..-++.+.+..|+|.+|||..+. .+++...-.+++.+. .+|..+..+.+.... ...+
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~--e~eK 419 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARN--ESEK 419 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecC--chHH
Confidence 998764433332 22234444589999999999754 445554444444332 355666666665542 3344
Q ss_pred HHHHHHHh--------hccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc
Q 007879 358 EAVLLSLC--------SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (586)
Q Consensus 358 ~~~l~~~~--------~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 429 (586)
...+..++ +..+.+++|||++|+..|+.|+.+|...|+++.++|++++..+|..+...|.++.+.++|+|-+
T Consensus 420 ~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAA 499 (830)
T COG1202 420 WDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAA 499 (830)
T ss_pred HHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhh
Confidence 44444444 3456789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEE---EeCCCC-ChhHHHHHhhhcccCC--CcceEEEEeccC
Q 007879 430 AARGLDIIGVQTVI---NYACPR-DLTSYVHRVGRTARAG--REGYAVTFVTDN 477 (586)
Q Consensus 430 ~~~Gldi~~v~~VI---~~~~p~-s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~ 477 (586)
++.|+|+|.-.+++ -++.-| |+..|.|+.|||||-+ ..|++|+++.+.
T Consensus 500 L~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 500 LAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999766554 244555 8999999999999966 459999998664
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.1e-37 Score=312.46 Aligned_cols=302 Identities=22% Similarity=0.205 Sum_probs=206.5
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChH------
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK------ 237 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~------ 237 (586)
++++.||||||||++|++|++..+.... ..+++|++|+++|+.|+++.+..++. ..++.+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~----~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK----ADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC----CCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccC
Confidence 5799999999999999999998764322 34799999999999999999998642 2344445443210
Q ss_pred ------HHHHHh-c-----CCCcEEEECcHHHHHHHHhcCC---cCc--cCceEEEEeCcccccCCCcHHHHHHHHHHCC
Q 007879 238 ------MQETAL-R-----SMPDIVVATPGRMIDHLRNSMS---VDL--DDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (586)
Q Consensus 238 ------~~~~~~-~-----~~~~Ili~Tp~~l~~~l~~~~~---~~l--~~~~~lViDEah~l~~~~~~~~i~~i~~~~~ 300 (586)
...... . ..++|+|+||++++..+..... +.+ -..++||+||||.+..+++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 000011 1 2357999999999887765211 111 123789999999998765443 444444443
Q ss_pred -CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhc-cCCceEEEEec
Q 007879 301 -KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSG 378 (586)
Q Consensus 301 -~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lIF~~ 378 (586)
...|+++||||++..+..+.......+.......... .....+.+..... ....+...+..++.. ..++++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIES-DKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeecc-ccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 5789999999999777666654433221111110000 0001122211111 111222233333332 34689999999
Q ss_pred cHHHHHHHHHHHhhcCC--ceEEecCCCCHHHHHHH----HHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChh
Q 007879 379 TKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEA----LELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (586)
Q Consensus 379 s~~~~~~l~~~l~~~~~--~~~~l~~~~~~~~r~~~----~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~ 452 (586)
++..++.++..|...+. .+..+||++++.+|.+. ++.|++|+..|||||+++++|+||+ +++||++..| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999987765 59999999999999764 8899999999999999999999995 8899998776 78
Q ss_pred HHHHHhhhcccCCCc----ceEEEEeccCc
Q 007879 453 SYVHRVGRTARAGRE----GYAVTFVTDND 478 (586)
Q Consensus 453 ~y~Qr~GR~gR~g~~----g~~~~l~~~~d 478 (586)
.|+||+||+||.|+. |.++++....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998854 36777765443
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.5e-35 Score=328.50 Aligned_cols=325 Identities=25% Similarity=0.307 Sum_probs=237.0
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~ 225 (586)
-.+++||.+++..++.+ ++|+++|||+|||+++++++...+.. ++.++|||+||++|+.|+.+.+..+....+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----KGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 36899999999988887 89999999999999998888877632 2347999999999999999999987655556
Q ss_pred eEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcE
Q 007879 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (586)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~ 305 (586)
.+..++|+.+...+ ..+...++|+|+||+.+...+... .+.+.++++|||||||++........+........+.+++
T Consensus 88 ~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 88 KIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred eEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 78888888776643 344456799999999998877654 4678899999999999987544344444444444556789
Q ss_pred EEEeecCchhHHH---HHHHhcCCCeEEeeCCCCC-----CCCCceEEEE-----------------------------E
Q 007879 306 MLFSATLTEDVDE---LIKLSLTKPLRLSADPSAK-----RPSTLTEEVV-----------------------------R 348 (586)
Q Consensus 306 i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----------------------------~ 348 (586)
++||||+...... .+.......+.+....... ....+....+ .
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 9999998644322 2222111111110000000 0000000000 0
Q ss_pred --Ee--------------------c-------------------------------------------------------
Q 007879 349 --IR--------------------R------------------------------------------------------- 351 (586)
Q Consensus 349 --~~--------------------~------------------------------------------------------- 351 (586)
.. .
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 00 0
Q ss_pred -----------------chhhhHHHHHHHHhh----ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCC-------
Q 007879 352 -----------------MREVNQEAVLLSLCS----KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN------- 403 (586)
Q Consensus 352 -----------------~~~~~~~~~l~~~~~----~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~------- 403 (586)
.....+...+..++. ...+.++||||+++..+..|..+|...++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 000001111222222 1456899999999999999999999999999999886
Q ss_pred -CCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 404 -LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 404 -~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
+++.+|..++..|++|..+|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| +|.++++++....
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999976 5999999887653
No 71
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3e-36 Score=311.99 Aligned_cols=333 Identities=23% Similarity=0.299 Sum_probs=237.9
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 007879 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~ 224 (586)
.-.++.||.+++..+| |+|+||++|||+|||.+++..+++++...++ +++++++||+.|+.|....+..++..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~----~KiVF~aP~~pLv~QQ~a~~~~~~~~-- 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK----GKVVFLAPTRPLVNQQIACFSIYLIP-- 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc----ceEEEeeCCchHHHHHHHHHhhccCc--
Confidence 4469999999999999 9999999999999999999999999877765 48999999999999988666654432
Q ss_pred ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc-CCCcHHHHHHHHHHCCCCC
Q 007879 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRR 303 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~ 303 (586)
..+....|+.........+...++|+|+||+.|.+.|.+.....|+.+.++||||||+-. +..|...+..++..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 455556666544444445667789999999999999987655557899999999999876 4556666667776666666
Q ss_pred cEEEEeecCchhHHHHHHHh---cCC----------------------CeE-----------------------------
Q 007879 304 QTMLFSATLTEDVDELIKLS---LTK----------------------PLR----------------------------- 329 (586)
Q Consensus 304 q~i~~SAT~~~~~~~~~~~~---~~~----------------------~~~----------------------------- 329 (586)
|+|++|||+..+........ +-. |+.
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 99999999975533321100 000 000
Q ss_pred -EeeCC----------CCCCCCCc---------------------eEEEEEEec--------------c-----------
Q 007879 330 -LSADP----------SAKRPSTL---------------------TEEVVRIRR--------------M----------- 352 (586)
Q Consensus 330 -~~~~~----------~~~~~~~~---------------------~~~~~~~~~--------------~----------- 352 (586)
+.... ........ ....+++-. .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 00000 00000000 000000000 0
Q ss_pred -------------------hhhhHH----HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh---cCCceEEec-----
Q 007879 353 -------------------REVNQE----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELH----- 401 (586)
Q Consensus 353 -------------------~~~~~~----~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~l~----- 401 (586)
....+. ..+..........++||||.++..|..|.++|.. .+++...+-
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 000001 1112222344567899999999999999999972 233333333
Q ss_pred ---CCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCc
Q 007879 402 ---GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (586)
Q Consensus 402 ---~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d 478 (586)
.+|++.++..++++|++|.++|||||+++++||||+.|+.||-||...|+...+||+|| ||+ +.|+++++++...
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 37999999999999999999999999999999999999999999999999999999999 997 4799999988655
Q ss_pred HHHHHHHH
Q 007879 479 RSLLKAIA 486 (586)
Q Consensus 479 ~~~~~~i~ 486 (586)
...++...
T Consensus 531 ~~~~E~~~ 538 (746)
T KOG0354|consen 531 VIEFERNN 538 (746)
T ss_pred HHHHHHHH
Confidence 55555443
No 72
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.9e-36 Score=324.87 Aligned_cols=338 Identities=22% Similarity=0.233 Sum_probs=261.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 007879 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (586)
Q Consensus 135 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~ 214 (586)
...-....+|...+++-|.++|..++.|+|+++.+|||.||+++|+||++-. ++-+|||.|..+|...+..
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------GGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---------CCceEEeccHHHHHHHHHH
Confidence 3344445689999999999999999999999999999999999999999743 2368999999999774433
Q ss_pred HHHHHhhcCCceEEEEeCCCChHHHHHH---hcC---CCcEEEECcHHHHHHHHhc-CCcCccC---ceEEEEeCccccc
Q 007879 215 MIEKIAQFTDIRCCLVVGGLSTKMQETA---LRS---MPDIVVATPGRMIDHLRNS-MSVDLDD---LAVLILDEADRLL 284 (586)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~Ili~Tp~~l~~~l~~~-~~~~l~~---~~~lViDEah~l~ 284 (586)
.+. ..++....+.++.....+... +.. ..+|++.||+.+...-.-. ....+.. +.++||||||+.+
T Consensus 323 ~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 323 HLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred hhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 332 358888999998887644332 333 4689999999985422110 0122334 8899999999999
Q ss_pred CCC--cHHHHHHHHHH--CCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHH
Q 007879 285 ELG--FSAEIHELVRL--CPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360 (586)
Q Consensus 285 ~~~--~~~~i~~i~~~--~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (586)
.|| |++.+..+... ......+|++|||.+..+...+-..++-+......... ...++...+..-. ........
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf-nR~NL~yeV~~k~--~~~~~~~~ 475 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF-NRPNLKYEVSPKT--DKDALLDI 475 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC-CCCCceEEEEecc--CccchHHH
Confidence 998 66666655322 22347899999999999888776555433222222222 2334444333211 12222333
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCcc
Q 007879 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (586)
Q Consensus 361 l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 440 (586)
+...-...+...+||||.++.+|+.+...|...++++..+|++|+..+|..+...|..++++|++||=++++|||.|+|+
T Consensus 476 ~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 476 LEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred HHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCcee
Confidence 33344456678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 441 ~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
.||||.+|.+...|.|-+|||||.|.+..|++|+...|...++.+...
T Consensus 556 ~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 556 FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred EEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999998888877654
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.1e-34 Score=292.79 Aligned_cols=293 Identities=18% Similarity=0.192 Sum_probs=201.5
Q ss_pred HHHHHHHHHhcCCC--eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc----CC
Q 007879 151 IQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF----TD 224 (586)
Q Consensus 151 ~Q~~~i~~il~g~~--~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~----~~ 224 (586)
+|.++++.+.++.+ +++++|||||||.+|++|++.. ..++++++|+++|+.|+++.+..+... .+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 59999999999874 6789999999999999998842 125899999999999999998887643 24
Q ss_pred ceEEEEeCCCChHH--------------------HHHHhcCCCcEEEECcHHHHHHHHhcC---C----cCccCceEEEE
Q 007879 225 IRCCLVVGGLSTKM--------------------QETALRSMPDIVVATPGRMIDHLRNSM---S----VDLDDLAVLIL 277 (586)
Q Consensus 225 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~Ili~Tp~~l~~~l~~~~---~----~~l~~~~~lVi 277 (586)
..+..+.|...... +.......+.|++|||+.|..+++... . ..+.++++||+
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 55555555422210 001113467899999999976654321 1 12578999999
Q ss_pred eCcccccCCCcH-----HHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHh--cCCCeEEeeCCCCC-------------
Q 007879 278 DEADRLLELGFS-----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAK------------- 337 (586)
Q Consensus 278 DEah~l~~~~~~-----~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~------------- 337 (586)
||+|.+..++.. .....++...+...+++++|||+++.+...+... +..++.........
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 999998754421 2233344444445799999999999887777654 44443322221000
Q ss_pred -----CCCCceEEEEEEecchhhhHHHHHH----HHhhccCCceEEEEeccHHHHHHHHHHHhhcC--CceEEecCCCCH
Q 007879 338 -----RPSTLTEEVVRIRRMREVNQEAVLL----SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--LKAAELHGNLTQ 406 (586)
Q Consensus 338 -----~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~--~~~~~l~~~~~~ 406 (586)
..+.+.+.+.. ...........+. ..+....++++||||+|+..++.++..|...+ +.+..+||.+++
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 00123332322 1111111111111 12223356799999999999999999998764 578899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcc
Q 007879 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (586)
Q Consensus 407 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~g 462 (586)
.+|.++ ++..|||||++++|||||+.+ +|| ++ |.++..|+||+||+|
T Consensus 311 ~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 988654 478999999999999999987 666 55 889999999999987
No 74
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.3e-35 Score=316.72 Aligned_cols=333 Identities=20% Similarity=0.248 Sum_probs=243.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 131 NLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
.+.+.+.+.+...++..+.+.|+.++...+. ++|+|+|+|||||||+++.+.+++.+.+. +.++++|||+++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa 89 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALA 89 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHH
Confidence 4778888999999998888888888866554 59999999999999999999999998875 23699999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcH
Q 007879 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (586)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~ 289 (586)
.+.++.+.++ ...|+++...+|+...... ...+++|+|+||+.+-..+++... .+..+++|||||+|.+.+....
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 9999999955 4569999999999775442 245689999999999998888654 5789999999999999876333
Q ss_pred HHHHHH---HHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCC-CCCCCCCceEEEEEEecchh---h-hHHHHH
Q 007879 290 AEIHEL---VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP-SAKRPSTLTEEVVRIRRMRE---V-NQEAVL 361 (586)
Q Consensus 290 ~~i~~i---~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~-~~~~~l 361 (586)
..+..+ ........|++++|||+++- .++....-.++......+ ...++....+.+........ . .....+
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 333333 23333448999999999753 333332222222111111 11122223333333221111 1 111222
Q ss_pred HHHh-hccCCceEEEEeccHHHHHHHHHHHhh-------------------------------------cCCceEEecCC
Q 007879 362 LSLC-SKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGN 403 (586)
Q Consensus 362 ~~~~-~~~~~~~~lIF~~s~~~~~~l~~~l~~-------------------------------------~~~~~~~l~~~ 403 (586)
.... ....++++||||+|+..+...++.+.. ....++.+|++
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 2222 234578999999999999888877752 01347789999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE----EeC-----CCCChhHHHHHhhhcccCC--CcceEEE
Q 007879 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYA-----CPRDLTSYVHRVGRTARAG--REGYAVT 472 (586)
Q Consensus 404 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~~-----~p~s~~~y~Qr~GR~gR~g--~~g~~~~ 472 (586)
++..+|.-+.+.|+.|.++||+||++++.|+|+|.-++|| .|+ .+-++.+++|+.|||||-| ..|.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999877776 466 5567899999999999977 3477777
Q ss_pred Ee
Q 007879 473 FV 474 (586)
Q Consensus 473 l~ 474 (586)
+.
T Consensus 404 ~~ 405 (766)
T COG1204 404 LA 405 (766)
T ss_pred Ee
Confidence 76
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.8e-35 Score=323.63 Aligned_cols=306 Identities=18% Similarity=0.212 Sum_probs=211.7
Q ss_pred cHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH----HHHHHHHHHHHHHhhcCC
Q 007879 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR----ELAVQVHSMIEKIAQFTD 224 (586)
Q Consensus 149 ~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr----~La~Q~~~~~~~l~~~~~ 224 (586)
+.+..+++..+..++.++++|+||||||+ ++|.+..-...+ ..+++++..|+| +||.|+.+.+..- .|
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g---~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG 147 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRG---VKGLIGHTQPRRLAARTVANRIAEELETE---LG 147 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCC---CCCceeeCCCcHHHHHHHHHHHHHHHhhh---hc
Confidence 34455677777777888899999999998 477543322211 123577778865 6666776666541 22
Q ss_pred ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcc-cccCCCcHHH-HHHHHHHCCCC
Q 007879 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKR 302 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~-i~~i~~~~~~~ 302 (586)
-.+++-.... .....+++|+|+|||+|++.+... ..++++++||||||| ++++.+|... +..++.. .+.
T Consensus 148 ~~VGY~vrf~------~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 148 GCVGYKVRFN------DQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred ceeceeecCc------cccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 2333222111 112456899999999999998763 448999999999999 5888887653 3333322 246
Q ss_pred CcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchh---hhHHHHHHHH---hhccCCceEEEE
Q 007879 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE---VNQEAVLLSL---CSKTFTSKVIIF 376 (586)
Q Consensus 303 ~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~---~~~~~~~~~lIF 376 (586)
.|+|+||||++. ..+...+...|+ +.+.... ..+...+........ ......+... +.....+.+|||
T Consensus 219 lKvILmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 899999999975 355555555553 4333221 123333333211111 1111111111 123446789999
Q ss_pred eccHHHHHHHHHHHhhcCCc---eEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC-------
Q 007879 377 SGTKQAAHRLKILFGLAALK---AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA------- 446 (586)
Q Consensus 377 ~~s~~~~~~l~~~l~~~~~~---~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~------- 446 (586)
|++..+++.++..|...++. +..+||.+++.+|.+++.. .|..+|||||+++++|||||+|++||+++
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999887654 7789999999999999886 47889999999999999999999999986
Q ss_pred --------CC---CChhHHHHHhhhcccCCCcceEEEEeccCcHH
Q 007879 447 --------CP---RDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (586)
Q Consensus 447 --------~p---~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~ 480 (586)
+| .|..+|.||+|||||. ++|.||.||+..+..
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 33 3557999999999998 699999999987643
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=314.31 Aligned_cols=338 Identities=23% Similarity=0.291 Sum_probs=259.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q 211 (586)
....+..++...|+..|+++|.+|+..+.+|++++|+.+||||||.+|++|++++++..+.. ++|+|.||++||+.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a----~AL~lYPtnALa~D 130 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA----RALLLYPTNALAND 130 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc----cEEEEechhhhHhh
Confidence 34456788888899999999999999999999999999999999999999999999987764 79999999999999
Q ss_pred HHHHHHHHhhcCC--ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC---CcCccCceEEEEeCcccccCC
Q 007879 212 VHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLEL 286 (586)
Q Consensus 212 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~---~~~l~~~~~lViDEah~l~~~ 286 (586)
+.+.+.++....+ +.+..+.|+.........+.+.++|++|||.+|-.++.... .+.++++++|||||+|..-..
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 8999998887766 88888999998888888889999999999999977443321 234678999999999986532
Q ss_pred ---CcHHHHH---HHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchh------
Q 007879 287 ---GFSAEIH---ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE------ 354 (586)
Q Consensus 287 ---~~~~~i~---~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 354 (586)
...-.+. .+++..+...|+|+.|||+.+.. ++...+........+. ....+..........+....
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcc
Confidence 1222333 33444456889999999997544 4444555544444322 22233333333333321000
Q ss_pred hhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHH----HHHhhcC----CceEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 007879 355 VNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLK----ILFGLAA----LKAAELHGNLTQAQRLEALELFRKQHVDFL 424 (586)
Q Consensus 355 ~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~----~~l~~~~----~~~~~l~~~~~~~~r~~~~~~f~~g~~~vL 424 (586)
......+..+.. -..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|+.|+..++
T Consensus 289 ~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~ 368 (851)
T COG1205 289 RSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGV 368 (851)
T ss_pred cchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEE
Confidence 011111222222 224679999999999999996 3333334 568899999999999999999999999999
Q ss_pred EecCcccccCCCCCccEEEEeCCCC-ChhHHHHHhhhcccCCCcceEEEEec
Q 007879 425 IATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 425 vaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
++|++++.|+||.+++.||.++.|. +..++.||.||+||.++.+..+.+..
T Consensus 369 ~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 369 IATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999 89999999999999987776666665
No 77
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=6.3e-34 Score=266.72 Aligned_cols=341 Identities=18% Similarity=0.233 Sum_probs=259.1
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH
Q 007879 129 ELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (586)
Q Consensus 129 ~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~ 207 (586)
+++.+.+..+.|+. +...+++|.|..+|+..+.|+++++..|||.||+++|++|++.. .+-+||++|..+
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------dg~alvi~plis 145 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------DGFALVICPLIS 145 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------CCceEeechhHH
Confidence 44566666666654 67789999999999999999999999999999999999999876 235999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH---HHh---cCCCcEEEECcHHHHH------HHHhcCCcCccCceEE
Q 007879 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---TAL---RSMPDIVVATPGRMID------HLRNSMSVDLDDLAVL 275 (586)
Q Consensus 208 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~Ili~Tp~~l~~------~l~~~~~~~l~~~~~l 275 (586)
|+....-.++++ |+....+....+...-. ..+ .....+++.||+.+.. .|.. .+....+.+|
T Consensus 146 lmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~~~~~i 219 (695)
T KOG0353|consen 146 LMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--HhhcceeEEE
Confidence 988665556654 66666666555433221 111 2235799999998743 2222 3456778999
Q ss_pred EEeCcccccCCC--cHHHHH--HHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEec
Q 007879 276 ILDEADRLLELG--FSAEIH--ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR 351 (586)
Q Consensus 276 ViDEah~l~~~~--~~~~i~--~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (586)
.+||+|+...|| |+..+. .+++..-+...+|+++||.++.+....+..+.-.-.+.+.....++ ++...+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~-nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP-NLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC-CceeEeeeCCC
Confidence 999999999998 455444 3445555678899999999988777665544322222332233333 45544444332
Q ss_pred chhhhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 007879 352 MREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (586)
Q Consensus 352 ~~~~~~~~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 430 (586)
. ...-..-+..+++ ...+...||||-++..++.+...|+..|+.+..+|++|.+.++.-+-+.|..|++.|+|+|-++
T Consensus 299 n-~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 299 N-EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred C-hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 2 2222333334443 3446678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEeCCCCChhHHHH-------------------------------------------HhhhcccCCCc
Q 007879 431 ARGLDIIGVQTVINYACPRDLTSYVH-------------------------------------------RVGRTARAGRE 467 (586)
Q Consensus 431 ~~Gldi~~v~~VI~~~~p~s~~~y~Q-------------------------------------------r~GR~gR~g~~ 467 (586)
++|||-|+|++||+..+|.+...|.| ..||+||.+.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 78999999999
Q ss_pred ceEEEEeccCcHHHHHHHH
Q 007879 468 GYAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 468 g~~~~l~~~~d~~~~~~i~ 486 (586)
..|+++|.-.|...+..+.
T Consensus 458 a~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISSMV 476 (695)
T ss_pred ccEEEEechHHHHhHHHHH
Confidence 9999999888766665544
No 78
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.3e-33 Score=296.60 Aligned_cols=321 Identities=21% Similarity=0.245 Sum_probs=243.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|. .|+++|..+--.+..|+ |+.++||+|||++|.+|++..++.+. .|+|++||++||.|.++++..+..+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~------~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGR------GVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCC------CEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 354 48888888777777776 99999999999999999998776432 4999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCcCc-----cCceEEEEeCcccccC---------CC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLLE---------LG 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~~l-----~~~~~lViDEah~l~~---------~~ 287 (586)
.|+++++++|+.+...+...+ .+||+|+||++| +++|+.+..+.+ ..+.++||||||.|+- .|
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 999999999998877665544 589999999999 999988644444 5899999999999641 00
Q ss_pred -------cH--------------------------------------HHHHHHH---HHCC-------------------
Q 007879 288 -------FS--------------------------------------AEIHELV---RLCP------------------- 300 (586)
Q Consensus 288 -------~~--------------------------------------~~i~~i~---~~~~------------------- 300 (586)
.. ..+..++ ..++
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 00 0001111 0000
Q ss_pred ----------------------------------------------------------------------CCCcEEEEee
Q 007879 301 ----------------------------------------------------------------------KRRQTMLFSA 310 (586)
Q Consensus 301 ----------------------------------------------------------------------~~~q~i~~SA 310 (586)
...++-+||+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 0125667888
Q ss_pred cCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHh--hccCCceEEEEeccHHHHHHHHH
Q 007879 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLKI 388 (586)
Q Consensus 311 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~lIF~~s~~~~~~l~~ 388 (586)
|......++...+--..+.+.......+...-. ..+. ....+..++...+ ....+.|+||||+|+..++.++.
T Consensus 388 Ta~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d---~v~~--t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~ 462 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVVVIPTNRSMIRKDEAD---LVYL--TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQ 462 (896)
T ss_pred CChhHHHHHHHHhCCCEEECCCCCCcceecCCC---eEEc--CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 877766666666654444333322221111111 1111 2233444444433 24568899999999999999999
Q ss_pred HHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC-------------------------------
Q 007879 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII------------------------------- 437 (586)
Q Consensus 389 ~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~------------------------------- 437 (586)
+|...|+++..||+.+.+.++..+...|+.| .|+|||++|+||+||.
T Consensus 463 ~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (896)
T PRK13104 463 LLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKR 540 (896)
T ss_pred HHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999 4999999999999995
Q ss_pred -------CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 438 -------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 438 -------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
|--+||-...+.|..-..|..||+||.|.+|.+..|++-.|.-+
T Consensus 541 ~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 541 HDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 22479999999999999999999999999999999999877543
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.3e-33 Score=305.08 Aligned_cols=336 Identities=17% Similarity=0.164 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 007879 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~ 224 (586)
.|.|+|..++..++.. ..+|++.++|.|||+.+.+.+-..+. ++. ..++|||||. .|+.||...+.+. .+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~-~g~---~~rvLIVvP~-sL~~QW~~El~~k---F~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL-TGR---AERVLILVPE-TLQHQWLVEMLRR---FN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH-cCC---CCcEEEEcCH-HHHHHHHHHHHHH---hC
Confidence 4899999998877653 47899999999999987554444333 322 2269999997 8999998888653 24
Q ss_pred ceEEEEeCCCChHHHHH--HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC--cHHHHHHHHHHCC
Q 007879 225 IRCCLVVGGLSTKMQET--ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCP 300 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~--~~~~i~~i~~~~~ 300 (586)
+.+.++.++........ ......+++|+|.+.+...-.....+.-..|++|||||||++.+.. -...+..+.....
T Consensus 224 l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 224 LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 55555444321111000 1112358999999887642111001223478999999999997321 1222333333333
Q ss_pred CCCcEEEEeecCchh-HHH------------------HHH-------------Hhc-CCCe-------------------
Q 007879 301 KRRQTMLFSATLTED-VDE------------------LIK-------------LSL-TKPL------------------- 328 (586)
Q Consensus 301 ~~~q~i~~SAT~~~~-~~~------------------~~~-------------~~~-~~~~------------------- 328 (586)
+...++++||||... ..+ +.. ..+ ..+.
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 456789999999521 111 000 000 0000
Q ss_pred ------------------------------EEeeCCCC----CCCCCceEEEEEEec-----------------------
Q 007879 329 ------------------------------RLSADPSA----KRPSTLTEEVVRIRR----------------------- 351 (586)
Q Consensus 329 ------------------------------~~~~~~~~----~~~~~~~~~~~~~~~----------------------- 351 (586)
.+-+.... ..+.... ..+.+..
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~-~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKREL-HPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCce-eEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 00000000 0000000 0000000
Q ss_pred ------------chhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHH-hhcCCceEEecCCCCHHHHHHHHHHHhc
Q 007879 352 ------------MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRK 418 (586)
Q Consensus 352 ------------~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l-~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 418 (586)
.....+...+..++....+.++||||+++..+..+...| ...|+.+..+||+|++.+|.+++..|++
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~ 542 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFAD 542 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhc
Confidence 000112334555566556789999999999999999999 4669999999999999999999999998
Q ss_pred C--CCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcC
Q 007879 419 Q--HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (586)
Q Consensus 419 g--~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~ 491 (586)
+ ...|||||+++++|+|++.+++|||||+||||..|.||+||+||.|++|.+.+++........+.+.+.+..
T Consensus 543 ~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 543 EEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 4 589999999999999999999999999999999999999999999999988777765554445555554433
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-33 Score=298.12 Aligned_cols=310 Identities=16% Similarity=0.189 Sum_probs=211.7
Q ss_pred CCcHHHHHHHHHHhc-C--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 007879 147 KPTPIQAACIPLALT-G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~-g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~ 223 (586)
.|+|||.+++..++. | +..++++|||+|||++.+ .++..+. .++|||||+..|+.||.+.+.++....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai-~aa~~l~--------k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-TAACTVK--------KSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH-HHHHHhC--------CCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 589999999999884 3 478999999999999864 4444431 249999999999999999999886555
Q ss_pred CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc-------CCcCccCceEEEEeCcccccCCCcHHHHHHHH
Q 007879 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~-------~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 296 (586)
...+..++|+.... ......|+|+|+..+....... ..+.-..|++||+||||++.... ...++
T Consensus 326 ~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVL 396 (732)
T ss_pred CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHH
Confidence 56666666653221 1234689999999875422111 01223578999999999986433 34444
Q ss_pred HHCCCCCcEEEEeecCchhHH--HHHHHhcCCCeEEeeCCCC----CCCCCceEEEEEEecc------------------
Q 007879 297 RLCPKRRQTMLFSATLTEDVD--ELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM------------------ 352 (586)
Q Consensus 297 ~~~~~~~q~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------------------ 352 (586)
..+. ....++||||+...-. ..+...+. |..+...-.. .........-+.++..
T Consensus 397 ~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 397 TIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 4443 3457999999963321 11222222 3222221000 0000111111111110
Q ss_pred --hhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEec
Q 007879 353 --REVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIAT 427 (586)
Q Consensus 353 --~~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~vLvaT 427 (586)
....+...+..++.. ..+.++||||.+...+..++..|. +..+||.+++.+|.++++.|+.| .+++||+|
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 001122222223332 257899999999999999988873 46689999999999999999975 78999999
Q ss_pred CcccccCCCCCccEEEEeCCCC-ChhHHHHHhhhcccCCCcceE-------EEEeccCcHHH
Q 007879 428 DVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYA-------VTFVTDNDRSL 481 (586)
Q Consensus 428 ~~~~~Gldi~~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~-------~~l~~~~d~~~ 481 (586)
+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |.|++......
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 9999999999999999999984 999999999999998766554 78888776443
No 81
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8e-32 Score=286.91 Aligned_cols=321 Identities=19% Similarity=0.192 Sum_probs=246.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. +|++.|.-+.-.+..|+ |+.++||+|||+++.+|++...+.+. .|-|++||..||.|.++++..+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~------~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK------GVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC------CEEEEecCHHHHHHHHHHHHHHHhh
Confidence 455 48899988887777776 99999999999999999974444322 3779999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCc-----CccCceEEEEeCcccccC-C---------
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLLE-L--------- 286 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~-----~l~~~~~lViDEah~l~~-~--------- 286 (586)
.|++++++.|+.+...+...+ .++|+|+||++| +++|++.... .+..+.++||||||.|+- .
T Consensus 149 LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 999999999999888776665 389999999999 9999876432 367899999999999651 0
Q ss_pred ------CcHHHHHHHHHHCC------------------------------------------------------------
Q 007879 287 ------GFSAEIHELVRLCP------------------------------------------------------------ 300 (586)
Q Consensus 287 ------~~~~~i~~i~~~~~------------------------------------------------------------ 300 (586)
.....+..+...+.
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 01111111111110
Q ss_pred ---------------------------------------------------------CCCcEEEEeecCchhHHHHHHHh
Q 007879 301 ---------------------------------------------------------KRRQTMLFSATLTEDVDELIKLS 323 (586)
Q Consensus 301 ---------------------------------------------------------~~~q~i~~SAT~~~~~~~~~~~~ 323 (586)
...++.+||+|......++...+
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 01357789999887777777766
Q ss_pred cCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceEEec
Q 007879 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (586)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~ 401 (586)
--..+.+.......+. ......+. ....+...+...+.. ..+.++||||+|+..++.++..|...++++..+|
T Consensus 387 ~l~vv~IPtnkp~~r~---d~~d~i~~--t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLn 461 (830)
T PRK12904 387 NLDVVVIPTNRPMIRI---DHPDLIYK--TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLN 461 (830)
T ss_pred CCCEEEcCCCCCeeee---eCCCeEEE--CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEecc
Confidence 5544433322221111 11111111 234455566665543 5678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCC--------------------------------------ccEEE
Q 007879 402 GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--------------------------------------VQTVI 443 (586)
Q Consensus 402 ~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~--------------------------------------v~~VI 443 (586)
+. +.+|...+..|..+...|+|||++|+||+||+- --|||
T Consensus 462 ak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi 539 (830)
T PRK12904 462 AK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI 539 (830)
T ss_pred Cc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE
Confidence 95 789999999999999999999999999999954 23799
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
....|.|..-..|..||+||.|.+|.+..|++-.|.-+
T Consensus 540 gTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 540 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred ecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 99999999999999999999999999999999877443
No 82
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-31 Score=284.31 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=129.9
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEE
Q 007879 128 MELNLSRPLLRACE-----ALGYSKP---TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (586)
Q Consensus 128 ~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (586)
+.|.+.+.+.+.+. .+||..| +|+|.++++.++.++++++.++||+|||++|++|++..++.+. .+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~------~v 138 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK------PV 138 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC------Ce
Confidence 35678888888877 5799988 9999999999999999999999999999999999998886432 38
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCcCcc-------C
Q 007879 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDLD-------D 271 (586)
Q Consensus 200 lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~~l~-------~ 271 (586)
+||+||++||.|+++++..++.+.++++++++||.+...+...+ .++|+|+||++| +++++.+ .+.++ .
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~ 215 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRG 215 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhccc
Confidence 99999999999999999999999999999999999988776655 589999999999 9999875 23333 5
Q ss_pred ceEEEEeCccccc
Q 007879 272 LAVLILDEADRLL 284 (586)
Q Consensus 272 ~~~lViDEah~l~ 284 (586)
+.++||||||.|+
T Consensus 216 ~~~~IIDEADsmL 228 (970)
T PRK12899 216 FYFAIIDEVDSIL 228 (970)
T ss_pred ccEEEEechhhhh
Confidence 6899999999976
No 83
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.1e-32 Score=286.15 Aligned_cols=321 Identities=20% Similarity=0.232 Sum_probs=239.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|. .|++.|.-+.-.+..|+ |+.+.||+|||+++.+|++...+.+. .|.|++|+..||.|-++++..+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~------~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK------GVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC------CeEEEeccHHHHHhhHHHHHHHHHh
Confidence 455 58999998887777777 99999999999999999988877654 3899999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCc-----CccCceEEEEeCccccc-C--------CC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-E--------LG 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~-----~l~~~~~lViDEah~l~-~--------~~ 287 (586)
.|++++++.++.+...+...+ .+||+++|...| +++|+..... ....+.+.||||+|.++ + .|
T Consensus 148 LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999988777665544 479999999887 5666654222 24568899999999865 1 00
Q ss_pred -------cHHHHHHHHH----------------------------------------HC--C------------------
Q 007879 288 -------FSAEIHELVR----------------------------------------LC--P------------------ 300 (586)
Q Consensus 288 -------~~~~i~~i~~----------------------------------------~~--~------------------ 300 (586)
....+..+.. .+ +
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 0000000000 00 0
Q ss_pred --------------------------------------------------------------------CCCcEEEEeecC
Q 007879 301 --------------------------------------------------------------------KRRQTMLFSATL 312 (586)
Q Consensus 301 --------------------------------------------------------------------~~~q~i~~SAT~ 312 (586)
...++.+||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 012567888888
Q ss_pred chhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHH
Q 007879 313 TEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILF 390 (586)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l 390 (586)
.....++...+....+.+....+..+ ....-..+. ....+...+...+. ...+.++||||+|+..++.++..|
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r---~d~~d~i~~--t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIR---KDSPDLLYP--TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeee---eeCCCeEEc--CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 76666666655444333322111111 111111111 22345555555553 346889999999999999999999
Q ss_pred hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC---Ccc-----EEEEeCCCCChhHHHHHhhhcc
Q 007879 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLTSYVHRVGRTA 462 (586)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~---~v~-----~VI~~~~p~s~~~y~Qr~GR~g 462 (586)
...++++..+|+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.|...|.|++||||
T Consensus 461 ~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtG 538 (796)
T PRK12906 461 DEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSG 538 (796)
T ss_pred HHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhc
Confidence 999999999999998887777777777775 999999999999994 888 9999999999999999999999
Q ss_pred cCCCcceEEEEeccCcHHH
Q 007879 463 RAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 463 R~g~~g~~~~l~~~~d~~~ 481 (586)
|.|.+|.+..|++..|.-+
T Consensus 539 RqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 539 RQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred cCCCCcceEEEEeccchHH
Confidence 9999999999999887443
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.1e-32 Score=304.53 Aligned_cols=303 Identities=18% Similarity=0.192 Sum_probs=211.5
Q ss_pred HHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh-hcCCceEEEEe
Q 007879 153 AACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDIRCCLVV 231 (586)
Q Consensus 153 ~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~-~~~~~~~~~~~ 231 (586)
.+++..+..++.+|++|+||||||+. +|.+..-... ...++++++.|+|..|..++..+.... ...|-.+++..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~---~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~v 147 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR---GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKV 147 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC---CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEE
Confidence 45666666777888999999999984 6655432211 123478889999988887776655432 22233333322
Q ss_pred CCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcc-cccCCCcHHH-HHHHHHHCCCCCcEEEEe
Q 007879 232 GGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 232 ~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~-i~~i~~~~~~~~q~i~~S 309 (586)
...+ .....+.|+|+|+|+|+..+... ..+..+++||||||| ++++.+|... +..++... +..|+|+||
T Consensus 148 R~~~------~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmS 218 (1283)
T TIGR01967 148 RFHD------QVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITS 218 (1283)
T ss_pred cCCc------ccCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEe
Confidence 2211 12456799999999999988763 358999999999999 5888887754 55555443 578999999
Q ss_pred ecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecch---hhhHHHH----HHHHhhccCCceEEEEeccHHH
Q 007879 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR---EVNQEAV----LLSLCSKTFTSKVIIFSGTKQA 382 (586)
Q Consensus 310 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~lIF~~s~~~ 382 (586)
||+.. ..+...+...|+ +.+... .. .+...+....... ....... +..++. ...+.+|||+++..+
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr-~~--PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGR-TY--PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGERE 291 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCC-cc--cceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHH
Confidence 99964 455555544453 333221 11 2222222211100 0111111 222222 245889999999999
Q ss_pred HHHHHHHHhhcC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCC----------
Q 007879 383 AHRLKILFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR---------- 449 (586)
Q Consensus 383 ~~~l~~~l~~~~---~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~---------- 449 (586)
++.+...|...+ +.+..+||.+++.+|.+++..+ +..+|||||+++++|||||+|++||+++++.
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 999999998764 4688999999999999987654 3468999999999999999999999998543
Q ss_pred --------ChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 450 --------DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 450 --------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
|..+|.||+||+||.| +|.||.||+..+.
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 5679999999999997 9999999987654
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.6e-31 Score=286.76 Aligned_cols=320 Identities=19% Similarity=0.217 Sum_probs=217.5
Q ss_pred CCcHHHHHHHHHHhcC---CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 007879 147 KPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g---~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~ 223 (586)
.|++.|+++++.+..+ +++++.|+||||||.+|+.++...+.. +.++|||+||++|+.|+.+.+.+. .
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~---f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRAR---F 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHH---h
Confidence 5899999999999884 789999999999999997776665532 236999999999999999998864 3
Q ss_pred CceEEEEeCCCChHHHHHH----hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCc------HHHHH
Q 007879 224 DIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF------SAEIH 293 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~----~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~------~~~i~ 293 (586)
+..+..++|+.+...+... ..+.++|+|+|++.+. ..+.++++|||||+|....++. ...+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v- 285 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL- 285 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH-
Confidence 6788999999877655432 2346899999998764 3467899999999998764331 1122
Q ss_pred HHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecc-hh----hhHHHHHHHHhhc-
Q 007879 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-RE----VNQEAVLLSLCSK- 367 (586)
Q Consensus 294 ~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~- 367 (586)
.+.+....+.+++++|||++......+... ....+...............++..... .. ......+..+...
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l 363 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL 363 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH
Confidence 233344567899999999876655444321 111111111111010111111111100 00 0001111111111
Q ss_pred cCCceEEEEeccH------------------------------------------------------------HHHHHHH
Q 007879 368 TFTSKVIIFSGTK------------------------------------------------------------QAAHRLK 387 (586)
Q Consensus 368 ~~~~~~lIF~~s~------------------------------------------------------------~~~~~l~ 387 (586)
..+.++|||+|.+ .-++++.
T Consensus 364 ~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 364 ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 1244677776642 1334556
Q ss_pred HHHhhc--CCceEEecCCCCH--HHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEe--CCCCC----------h
Q 007879 388 ILFGLA--ALKAAELHGNLTQ--AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY--ACPRD----------L 451 (586)
Q Consensus 388 ~~l~~~--~~~~~~l~~~~~~--~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~--~~p~s----------~ 451 (586)
+.|... +.++..+|+++++ .++..++..|++|+.+|||+|+++++|+|+|+|++|+.+ |.+.+ .
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 666554 6789999999864 678999999999999999999999999999999998655 44433 2
Q ss_pred hHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHH
Q 007879 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 452 ~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~ 486 (586)
..|.|++||+||.+..|.+++.....+...+..+.
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 67899999999999999999887766655555543
No 86
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=279.53 Aligned_cols=335 Identities=18% Similarity=0.229 Sum_probs=240.8
Q ss_pred HHcCCCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCC----CCCCCeEEEEEcCcHHHHHHHHHH
Q 007879 141 EALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRP----KRIPAIRVLILTPTRELAVQVHSM 215 (586)
Q Consensus 141 ~~~~~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~vlil~Ptr~La~Q~~~~ 215 (586)
..++|..+..+|..++|.+.. +.|.|||||||||||..|+|.+|+.+.... -.....++++|+|+++||..+++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 346788899999999999987 579999999999999999999998887521 123466899999999999999887
Q ss_pred HHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC--CcCccCceEEEEeCcccccCCCcHHHHH
Q 007879 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM--SVDLDDLAVLILDEADRLLELGFSAEIH 293 (586)
Q Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~--~~~l~~~~~lViDEah~l~~~~~~~~i~ 293 (586)
+.+-....|+.|..++|++...... -..++|+|+||+.+--.-+... ...++.+.+|||||+|.+-+. ..+.+.
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHH
Confidence 7775566699999999997665443 2347999999998733222221 123577899999999988753 233333
Q ss_pred HHH-------HHCCCCCcEEEEeecCchhHHHHHHHhcCC-CeEEeeCCCCCCCCCceEEEEEEecchhhhH--------
Q 007879 294 ELV-------RLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRMREVNQ-------- 357 (586)
Q Consensus 294 ~i~-------~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 357 (586)
.|+ .......+++++|||+|+- .+++...-.+ +.-+..-....+|..+.+.++..+.......
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 332 2334567899999999853 3333222222 2333333344577778887776654411111
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc-----------------------CCceEEecCCCCHHHHHHHHH
Q 007879 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-----------------------ALKAAELHGNLTQAQRLEALE 414 (586)
Q Consensus 358 ~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~-----------------------~~~~~~l~~~~~~~~r~~~~~ 414 (586)
...+..++ ..+.+++|||.++....+.++.|... ....+.+|++|...+|..+..
T Consensus 339 ~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 339 YDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 11222222 34789999999999999888888432 134778999999999999999
Q ss_pred HHhcCCCcEEEecCcccccCCCCCccEEEE----eCCCC------ChhHHHHHhhhccc--CCCcceEEEEeccCcHHHH
Q 007879 415 LFRKQHVDFLIATDVAARGLDIIGVQTVIN----YACPR------DLTSYVHRVGRTAR--AGREGYAVTFVTDNDRSLL 482 (586)
Q Consensus 415 ~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~~p~------s~~~y~Qr~GR~gR--~g~~g~~~~l~~~~d~~~~ 482 (586)
.|..|.++||+||..++.|+|+|.-.++|- ||... ..-+-+|..||||| ++..|.++++.+.+-...+
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 999999999999999999999987665552 33332 45677999999999 5577988888766544433
No 87
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.3e-30 Score=274.86 Aligned_cols=321 Identities=18% Similarity=0.194 Sum_probs=241.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|. .|+++|..+--.+..|+ |+.++||.|||++|.+|++...+.+. .|.||+|++.||.|..+++..+..+
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~------~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGK------GVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCC------CEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 455 48888887776776666 99999999999999999998876543 3999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCcCc-----cCceEEEEeCcccccCC---------C
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLLEL---------G 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~~l-----~~~~~lViDEah~l~~~---------~ 287 (586)
.|++++++.++.+...... ...+||+++||+.| +++|+.+..+.. ..+.++||||||.++-- |
T Consensus 150 lGlsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 150 LGLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred cCCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 9999999999887644332 33689999999999 999988644443 77899999999986520 0
Q ss_pred --------cH---HHHHHHH------------------------------------HHC---------------------
Q 007879 288 --------FS---AEIHELV------------------------------------RLC--------------------- 299 (586)
Q Consensus 288 --------~~---~~i~~i~------------------------------------~~~--------------------- 299 (586)
|. ..+..+. ..+
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 00 0000000 000
Q ss_pred -------------C-------------------------------------------------------------CCCcE
Q 007879 300 -------------P-------------------------------------------------------------KRRQT 305 (586)
Q Consensus 300 -------------~-------------------------------------------------------------~~~q~ 305 (586)
. ...++
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence 0 01256
Q ss_pred EEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHH
Q 007879 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAA 383 (586)
Q Consensus 306 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~ 383 (586)
.+||+|......++...+--..+.+.......+... .. ..+. ....+..++...+. ...+.++||||+|...+
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~-~d--~iy~--t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDM-AD--LVYL--TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEECCCCCCccceeC-CC--cEEe--CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 788888877766776666554444433222211111 11 1111 12333333333332 34588999999999999
Q ss_pred HHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC--------------------------
Q 007879 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII-------------------------- 437 (586)
Q Consensus 384 ~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~-------------------------- 437 (586)
+.++.+|...++++..+|+.+.+.++..+...|+.|. |+|||++|+||+||.
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999995
Q ss_pred -----------CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 438 -----------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 438 -----------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
|--+||-...+.|..-..|..||+||.|.+|.+..|++-.|.-+
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 33489999999999999999999999999999999999887543
No 88
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.9e-30 Score=265.04 Aligned_cols=325 Identities=18% Similarity=0.196 Sum_probs=242.5
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 141 ~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
...+|. |..+|++||-++..|.+++|.|+|.+|||+++-.++...-. ...|+++..|-++|.+|-++.|+.-.
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~------h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK------HMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh------hccceEecchhhhhccchHHHHHHhc
Confidence 345664 89999999999999999999999999999887665544322 24479999999999999999998743
Q ss_pred hcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCC
Q 007879 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (586)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~ 300 (586)
.. +++++|+... ...+.++|+|.+.|..+|.++..+ ++++++||+||+|.+.+......+.+++-++|
T Consensus 365 ~D----vgLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQI-------NPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred cc----cceeecceee-------CCCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeecc
Confidence 22 3367777543 455789999999999999987554 78899999999999999888888999999999
Q ss_pred CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecch---------------------------
Q 007879 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR--------------------------- 353 (586)
Q Consensus 301 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 353 (586)
+..++|++|||.|+.....-+..-.+.-.+.+.....+|..+.+.+..-....
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 99999999999987655433333333333444444455555555433211000
Q ss_pred -------------------------------------hh-hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC-
Q 007879 354 -------------------------------------EV-NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA- 394 (586)
Q Consensus 354 -------------------------------------~~-~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~- 394 (586)
.. .....+...+....--|++|||-+++.|+..+.+|...+
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 00 001122333334444589999999999999998884221
Q ss_pred --------------------------------------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 395 --------------------------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 395 --------------------------------------~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
-.++++||++-+--+.-+.-.|..|-++||+||..+++|+|.
T Consensus 593 ~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM 672 (1248)
T KOG0947|consen 593 TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM 672 (1248)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC
Confidence 247889999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCC---------CChhHHHHHhhhcccCC--CcceEEEEeccC--cHHHHHHH
Q 007879 437 IGVQTVINYACP---------RDLTSYVHRVGRTARAG--REGYAVTFVTDN--DRSLLKAI 485 (586)
Q Consensus 437 ~~v~~VI~~~~p---------~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~--d~~~~~~i 485 (586)
|.-++|+. .+. -.|-.|.|++|||||.| ..|+++++.... +...++.+
T Consensus 673 PARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~l 733 (1248)
T KOG0947|consen 673 PARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRL 733 (1248)
T ss_pred CceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhH
Confidence 97666663 221 26889999999999988 458888887654 44444444
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=2.9e-30 Score=241.98 Aligned_cols=202 Identities=49% Similarity=0.786 Sum_probs=183.1
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 127 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
|+++++++.+.+.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+..... ..+++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~-~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK-KDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc-cCCceEEEEcCCH
Confidence 678999999999999999999999999999999999999999999999999999999998877631 2356899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC
Q 007879 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (586)
Q Consensus 207 ~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 286 (586)
+|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||+.|...+.+. ...+.+++++|+||||.+.+.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhcc
Confidence 9999999999998887889999999998877777777778999999999999988875 467889999999999999998
Q ss_pred CcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEE
Q 007879 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (586)
Q Consensus 287 ~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~ 330 (586)
++...+..+.+.++..+|++++|||+++.+..++..++.+|+.+
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 89999999999999999999999999999999999999888765
No 90
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-30 Score=264.30 Aligned_cols=332 Identities=18% Similarity=0.159 Sum_probs=232.8
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
..-+.++.++-..+. ...-.++++.+|..+--+||||.||||||++....++++-+.......++.+-|..|+|..|
T Consensus 242 V~R~~EIQ~sR~~LP---I~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAa 318 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLP---IVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAA 318 (1172)
T ss_pred ecCcHHHHHHHhcCc---hhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHH
Confidence 345566666544332 23455678888888888999999999999976666666666555544566899999999888
Q ss_pred HHHHHHHH-HHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc-C--
Q 007879 210 VQVHSMIE-KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-E-- 285 (586)
Q Consensus 210 ~Q~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-~-- 285 (586)
.-+++... +++. .+-.|++...- .......+.|.++|.|.|+..+.+ ++.|..+++|||||||.-. +
T Consensus 319 iamAkRVa~EL~~-~~~eVsYqIRf------d~ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTD 389 (1172)
T KOG0926|consen 319 IAMAKRVAFELGV-LGSEVSYQIRF------DGTIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTD 389 (1172)
T ss_pred HHHHHHHHHHhcc-CccceeEEEEe------ccccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHH
Confidence 87665544 3333 45555544322 122345578999999999999988 6889999999999999743 2
Q ss_pred --CCcHHHHHHHHHHCCC------CCcEEEEeecCchhHHH-HHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhh
Q 007879 286 --LGFSAEIHELVRLCPK------RRQTMLFSATLTEDVDE-LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (586)
Q Consensus 286 --~~~~~~i~~i~~~~~~------~~q~i~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (586)
.|+...+-.+.....+ +.++|+||||+.-.-.. ...++-..|..+.+... ..| ...|+--+.+......
T Consensus 390 ILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdAR-QfP-VsIHF~krT~~DYi~e 467 (1172)
T KOG0926|consen 390 ILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDAR-QFP-VSIHFNKRTPDDYIAE 467 (1172)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecc-cCc-eEEEeccCCCchHHHH
Confidence 2244444444444333 67899999999743222 22222222333333221 111 2222222233333445
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc-------------------------------------------
Q 007879 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------------------- 393 (586)
Q Consensus 357 ~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~------------------------------------------- 393 (586)
.....+.++++.+.+.+|||+...+.+..|...|+..
T Consensus 468 AfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~ 547 (1172)
T KOG0926|consen 468 AFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYE 547 (1172)
T ss_pred HHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhccccc
Confidence 5666778888999999999999999999888777210
Q ss_pred --------------------------------------------------------CCceEEecCCCCHHHHHHHHHHHh
Q 007879 394 --------------------------------------------------------ALKAAELHGNLTQAQRLEALELFR 417 (586)
Q Consensus 394 --------------------------------------------------------~~~~~~l~~~~~~~~r~~~~~~f~ 417 (586)
.+-|++|++-++...+.+++..-.
T Consensus 548 ~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p 627 (1172)
T KOG0926|consen 548 SDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVP 627 (1172)
T ss_pred chhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCC
Confidence 133788999999999999999999
Q ss_pred cCCCcEEEecCcccccCCCCCccEEEEeC--------CCC----------ChhHHHHHhhhcccCCCcceEEEEecc
Q 007879 418 KQHVDFLIATDVAARGLDIIGVQTVINYA--------CPR----------DLTSYVHRVGRTARAGREGYAVTFVTD 476 (586)
Q Consensus 418 ~g~~~vLvaT~~~~~Gldi~~v~~VI~~~--------~p~----------s~~~y~Qr~GR~gR~g~~g~~~~l~~~ 476 (586)
.|..-++|||++|+..|.||++++||..+ .-. |.++--||+|||||.| +|+||.||+.
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99999999999999999999999999644 333 3445569999999998 9999999975
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.3e-28 Score=268.41 Aligned_cols=313 Identities=20% Similarity=0.230 Sum_probs=204.3
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc--C
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF--T 223 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~--~ 223 (586)
..|+|+|+.+......+..+|+.+|||+|||.++++.+ ..+..... ..+++|.+||+++++|+++.+..+... .
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A-~~l~~~~~---~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYA-WRLIDQGL---ADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHH-HHHHHhCC---CCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 46999999886554445678899999999999975544 44443322 236999999999999999998865432 2
Q ss_pred CceEEEEeCCCChHHHH---------------------HHhc---C---CCcEEEECcHHHHHHHHhcCCcCccCc----
Q 007879 224 DIRCCLVVGGLSTKMQE---------------------TALR---S---MPDIVVATPGRMIDHLRNSMSVDLDDL---- 272 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~---------------------~~~~---~---~~~Ili~Tp~~l~~~l~~~~~~~l~~~---- 272 (586)
...+.+.+|........ ..+. + ..+|+|||..+++......+...+..+
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 45677777765322110 0011 1 158999999998865544323223333
Q ss_pred eEEEEeCcccccCCCcHHHHHHHHHHC-CCCCcEEEEeecCchhHHHHHHHhcCC--CeE-------EeeCC-CC-----
Q 007879 273 AVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTK--PLR-------LSADP-SA----- 336 (586)
Q Consensus 273 ~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~-------~~~~~-~~----- 336 (586)
++|||||+|.+-.. +...+..+++.+ .....+|+||||+|......+...+.. +.. +.... ..
T Consensus 441 svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~ 519 (878)
T PRK09694 441 SVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFD 519 (878)
T ss_pred CeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeee
Confidence 48999999997432 334445555443 345679999999998776544322111 000 00000 00
Q ss_pred --CCCCC-ceEEEEEEecc--hh-hhHHHHHHHHhhc-cCCceEEEEeccHHHHHHHHHHHhhcC---CceEEecCCCCH
Q 007879 337 --KRPST-LTEEVVRIRRM--RE-VNQEAVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLTQ 406 (586)
Q Consensus 337 --~~~~~-~~~~~~~~~~~--~~-~~~~~~l~~~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~---~~~~~l~~~~~~ 406 (586)
..+.. .....+.+... .. ......+..+... ..++++||||||+..+..+++.|...+ ..+..+||.++.
T Consensus 520 ~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~ 599 (878)
T PRK09694 520 LSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTL 599 (878)
T ss_pred ccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCH
Confidence 00000 00111111111 00 1112223333322 346789999999999999999998764 679999999999
Q ss_pred HHH----HHHHHHH-hcCC---CcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCC
Q 007879 407 AQR----LEALELF-RKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466 (586)
Q Consensus 407 ~~r----~~~~~~f-~~g~---~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 466 (586)
.+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ...++||+||+||.++
T Consensus 600 ~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 600 NDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999 4567788 6665 4799999999999999 68999998878 6899999999999775
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5e-29 Score=254.81 Aligned_cols=324 Identities=23% Similarity=0.249 Sum_probs=237.0
Q ss_pred CCCCHHHHH-HHHHcCCCCCcHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 130 LNLSRPLLR-ACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 130 ~~l~~~l~~-~l~~~~~~~~~~~Q~~~i~~il~g------~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
+..+..+++ .+..++|. ||..|+.++..|... .+-|++|.-|||||+++++.++..+-. +.++..+
T Consensus 245 ~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~------G~Q~ALM 317 (677)
T COG1200 245 LPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA------GYQAALM 317 (677)
T ss_pred CCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc------CCeeEEe
Confidence 344455444 45677885 999999999999873 245899999999999999999888754 3469999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
+||--||.|.++.+.++....++++..++|......+...+ .+..+|+|+|..-+.+ .+.+.++.++|+|
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd------~V~F~~LgLVIiD 391 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD------KVEFHNLGLVIID 391 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc------ceeecceeEEEEe
Confidence 99999999999999999999999999999998776654433 3448999999433322 5778999999999
Q ss_pred CcccccCCCcHHHHHHHHHHCCC-CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCC-CCceEEEEEEecchhhh
Q 007879 279 EADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP-STLTEEVVRIRRMREVN 356 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 356 (586)
|=|+ |...-+..+..-.. .+.+++||||+-|....+....-- .++...+-... ..+.-..+... ....
T Consensus 392 EQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDl---dvS~IdElP~GRkpI~T~~i~~~--~~~~ 461 (677)
T COG1200 392 EQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDL---DVSIIDELPPGRKPITTVVIPHE--RRPE 461 (677)
T ss_pred cccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccc---cchhhccCCCCCCceEEEEeccc--cHHH
Confidence 9999 55444444444444 678999999988766555433222 22222221111 11222222111 1111
Q ss_pred HHHHHHHHhhccCCceEEEEeccHH--------HHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEe
Q 007879 357 QEAVLLSLCSKTFTSKVIIFSGTKQ--------AAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (586)
Q Consensus 357 ~~~~l~~~~~~~~~~~~lIF~~s~~--------~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLva 426 (586)
-...+..-+. .+.++.+.|+-.+ .+..++..|+.. +++++.+||.|+..++.+++..|++|+.+||||
T Consensus 462 v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 462 VYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred HHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEE
Confidence 1122222222 4778889998654 344555555532 567999999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCCC-ChhHHHHHhhhcccCCCcceEEEEeccCc
Q 007879 427 TDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND 478 (586)
Q Consensus 427 T~~~~~Gldi~~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d 478 (586)
|.+++.|+|+|+.+++|..+.-. -.++.-|-.||+||.+.+.+|++++.+..
T Consensus 540 TTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 540 TTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred eeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999998887543 57788999999999999999999998765
No 93
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=5.4e-30 Score=264.89 Aligned_cols=298 Identities=19% Similarity=0.213 Sum_probs=204.4
Q ss_pred CCcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|+++|.+++..+.. ++.+++++|||+|||.++ +.++..+. .++||||||++|+.||.+.+......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va-~~~~~~~~--------~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVA-AEAIAELK--------RSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHH-HHHHHHhc--------CCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 599999999999999 889999999999999876 44444431 13999999999999998777654322
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHH-HhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL-RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l-~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~ 301 (586)
. ..++.+.|+.... .. ..|+|+|.+.+.... .. .+....+.+||+||||++....+......+....
T Consensus 107 ~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~--~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~-- 174 (442)
T COG1061 107 N-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLD--EFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY-- 174 (442)
T ss_pred c-cccceecCceecc------CC-CcEEEEEhHHHhhhhhhh--hhcccccCEEEEEccccCCcHHHHHHHHhhhccc--
Confidence 1 1234444432211 11 369999999997742 11 2334579999999999998765554444443332
Q ss_pred CCcEEEEeecCchhH---HHHHHHhcCCCeEEeeCCCCC----CCCCceEEEEEEecch---------------------
Q 007879 302 RRQTMLFSATLTEDV---DELIKLSLTKPLRLSADPSAK----RPSTLTEEVVRIRRMR--------------------- 353 (586)
Q Consensus 302 ~~q~i~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------------------- 353 (586)
.+++||||+.... ...+...+. |+.+....... .........+......
T Consensus 175 --~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 175 --PRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred --ceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 2899999976332 111112221 23332211100 0001111111110000
Q ss_pred --------------hhhHHHHHHHHhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhc
Q 007879 354 --------------EVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (586)
Q Consensus 354 --------------~~~~~~~l~~~~~~~-~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 418 (586)
...+...+..++... .+.+++|||.+...+..++..|...++ +..+.+.++..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 000111112222222 467999999999999999999998888 8999999999999999999999
Q ss_pred CCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhccc-CCCcce
Q 007879 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGY 469 (586)
Q Consensus 419 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR-~g~~g~ 469 (586)
|.+++|+++.++.+|+|+|+++++|...+..|+..|+||+||.-| ...++.
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999 444444
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=7.2e-29 Score=272.76 Aligned_cols=327 Identities=18% Similarity=0.220 Sum_probs=218.6
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~~il----~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|++||..++.+++ .|.++|++..||.|||++. +.++..+..... ....+|||||. ++..||.+.+.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~--~~gp~LIVvP~-SlL~nW~~Ei~kw~-- 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRG--ITGPHMVVAPK-STLGNWMNEIRRFC-- 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcC--CCCCEEEEeCh-HHHHHHHHHHHHHC--
Confidence 68999999999986 4788999999999999974 555555543221 12358999997 55577888898875
Q ss_pred CCceEEEEeCCCChHHHHH---HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 223 TDIRCCLVVGGLSTKMQET---ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~---~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
+.+++..++|......... ......+|+|+|++.+...... +.-..|.+|||||||++.+. .......+..+
T Consensus 243 p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 243 PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 4566777777543322111 1234579999999998765432 33346899999999999874 33344455555
Q ss_pred CCCCcEEEEeecCchh-HHHHHHHh-cCCCeEE----------------------------------ee---CCCCCCCC
Q 007879 300 PKRRQTMLFSATLTED-VDELIKLS-LTKPLRL----------------------------------SA---DPSAKRPS 340 (586)
Q Consensus 300 ~~~~q~i~~SAT~~~~-~~~~~~~~-~~~~~~~----------------------------------~~---~~~~~~~~ 340 (586)
. ....+++||||-.+ +.++.... +-.|-.+ .. ......|
T Consensus 318 ~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP- 395 (1033)
T PLN03142 318 S-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP- 395 (1033)
T ss_pred h-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC-
Confidence 4 34468999998532 22221110 0000000 00 0000001
Q ss_pred CceEEEEEEec------------------------------------------------------------chhhhHHHH
Q 007879 341 TLTEEVVRIRR------------------------------------------------------------MREVNQEAV 360 (586)
Q Consensus 341 ~~~~~~~~~~~------------------------------------------------------------~~~~~~~~~ 360 (586)
......+.+.. .....+...
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 11111111110 000112222
Q ss_pred HHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC---CCcEEEecCcccccCC
Q 007879 361 LLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATDVAARGLD 435 (586)
Q Consensus 361 l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g---~~~vLvaT~~~~~Gld 435 (586)
+..++. ...+.++|||+.....+..|..+|...++.+..+||+++..+|..+++.|+.. ..-+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 233332 22467999999999999999999999999999999999999999999999864 3457999999999999
Q ss_pred CCCccEEEEeCCCCChhHHHHHhhhcccCCCcce--EEEEeccCc--HHHHHHHH
Q 007879 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFVTDND--RSLLKAIA 486 (586)
Q Consensus 436 i~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~~~~d--~~~~~~i~ 486 (586)
+..+++||+||+||||..+.|++||++|.|+... ++.|++.+. ..++....
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~ 610 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAY 610 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHH
Confidence 9999999999999999999999999999998755 455566543 34444433
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.4e-29 Score=263.05 Aligned_cols=300 Identities=18% Similarity=0.188 Sum_probs=195.8
Q ss_pred EEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH---
Q 007879 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA--- 242 (586)
Q Consensus 166 lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--- 242 (586)
|+.|+||||||.+|+. ++..++..+ .++||++|+++|+.|+++.+++. .+..+.+++++.+...+...
T Consensus 1 LL~g~TGsGKT~v~l~-~i~~~l~~g-----~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQ-AIEKVLALG-----KSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHH-HHHHHHHcC-----CeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHH
Confidence 5789999999999854 444444432 26999999999999999998864 35678889998876654333
Q ss_pred -hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-----cH-HHHHHHHHHCCCCCcEEEEeecCchh
Q 007879 243 -LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FS-AEIHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 243 -~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-----~~-~~i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
..+..+|+|+|+..+. ..+.++++|||||+|....++ |. ..+..+ .....+.++|++|||++.+
T Consensus 72 ~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCCHH
Confidence 2345799999987663 346789999999999877443 11 222222 3333578899999997765
Q ss_pred HHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchh-hhHHHHHHHHh-hc-cCCceEEEEeccHHH----------
Q 007879 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE-VNQEAVLLSLC-SK-TFTSKVIIFSGTKQA---------- 382 (586)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~-~~~~~~lIF~~s~~~---------- 382 (586)
....+.. .....+...............++....... ..-...+...+ .. ..+.++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 5444322 111111111111000111111222211100 00011122222 21 235689999765432
Q ss_pred --------------------------------------------------HHHHHHHHhhc--CCceEEecCCCCHHHH-
Q 007879 383 --------------------------------------------------AHRLKILFGLA--ALKAAELHGNLTQAQR- 409 (586)
Q Consensus 383 --------------------------------------------------~~~l~~~l~~~--~~~~~~l~~~~~~~~r- 409 (586)
.+++...|... +.++..+|++++...+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 35566666654 6789999999887665
Q ss_pred -HHHHHHHhcCCCcEEEecCcccccCCCCCccEEE--EeCCCC----------ChhHHHHHhhhcccCCCcceEEEEecc
Q 007879 410 -LEALELFRKQHVDFLIATDVAARGLDIIGVQTVI--NYACPR----------DLTSYVHRVGRTARAGREGYAVTFVTD 476 (586)
Q Consensus 410 -~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI--~~~~p~----------s~~~y~Qr~GR~gR~g~~g~~~~l~~~ 476 (586)
..++..|++|+.+|||+|+++++|+|+|+|++|+ ++|... ....|.|++||+||.++.|.+++....
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 8999999999999999999999999999999986 455322 246789999999999999999977655
Q ss_pred CcHHHHHHH
Q 007879 477 NDRSLLKAI 485 (586)
Q Consensus 477 ~d~~~~~~i 485 (586)
.+...+..+
T Consensus 381 p~~~~~~~~ 389 (505)
T TIGR00595 381 PNHPAIQAA 389 (505)
T ss_pred CCCHHHHHH
Confidence 554444443
No 96
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=4.2e-29 Score=253.73 Aligned_cols=313 Identities=19% Similarity=0.261 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.+++||.+.++|+.. |-++|+...+|.|||++ .|.++..+....+ . ++..||+||...|.+ |.+.+.+|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~-~-~GPfLVi~P~StL~N-W~~Ef~rf~-- 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG-I-PGPFLVIAPKSTLDN-WMNEFKRFT-- 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC-C-CCCeEEEeeHhhHHH-HHHHHHHhC--
Confidence 689999999999875 77899999999999987 5777776665433 2 234899999999965 566677654
Q ss_pred CCceEEEEeCCCChHHH--HHH-hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 223 TDIRCCLVVGGLSTKMQ--ETA-LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~--~~~-~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
+++++.+++|+...... ... .....+|+|||++..+..-. .+.--+|+++||||||++.+. ...+..+++.+
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 57888888887532221 111 23368999999999876421 233457999999999999885 34455666665
Q ss_pred CCCCcEEEEeecCc-hhHHHHH----------------------------------------------------------
Q 007879 300 PKRRQTMLFSATLT-EDVDELI---------------------------------------------------------- 320 (586)
Q Consensus 300 ~~~~q~i~~SAT~~-~~~~~~~---------------------------------------------------------- 320 (586)
.... .+++|+|+- +++.++.
T Consensus 316 ~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred cccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 4333 477788873 2222221
Q ss_pred -----------------------------------------------HHhcCCCeEEeeCCCCCCCCCceEEEEEEecch
Q 007879 321 -----------------------------------------------KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (586)
Q Consensus 321 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (586)
+..|+.|..+...... .|.....+. ..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttdehL-----v~ 468 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTDEHL-----VT 468 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcchHH-----Hh
Confidence 1111111111110000 000000000 01
Q ss_pred hhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC---CcEEEecC
Q 007879 354 EVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH---VDFLIATD 428 (586)
Q Consensus 354 ~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~---~~vLvaT~ 428 (586)
...+..+|..++. ...+++||||.+.....+.|..++-..++.++.++|.++-++|...++.|+... .-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 1222333444443 334789999999999999999999999999999999999999999999999764 34699999
Q ss_pred cccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcce--EEEEeccC
Q 007879 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFVTDN 477 (586)
Q Consensus 429 ~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~~~~ 477 (586)
+++.|||+..+++||.||..|||+..+|+..||+|.|+... ++.|++.+
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 99999999999999999999999999999999999998655 55556655
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=9.9e-28 Score=258.62 Aligned_cols=320 Identities=20% Similarity=0.215 Sum_probs=235.4
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 140 l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
....+|. |.++|++++-.+..|.+++++||||+|||.+.-.++...+..+ + +++++.|.++|.+|.++.+...
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-q-----rviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG-Q-----RVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-C-----ceEeccchhhhhhhHHHHHHHH
Confidence 3556785 9999999999999999999999999999998766665554432 2 5999999999999999888764
Q ss_pred hhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
.....-.+++++|+.+. +..+.|+|+|.+.|.+++..+ ...+..+..||+||+|.|.+......+.+++-++
T Consensus 186 fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 186 FGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 33222235677776553 466789999999999999876 4668899999999999999998888999999999
Q ss_pred CCCCcEEEEeecCchhHHHHHHHh--cCCCeEEeeCCCCCCCCCceEEEEEEec----chhhh-----------------
Q 007879 300 PKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRR----MREVN----------------- 356 (586)
Q Consensus 300 ~~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----------------- 356 (586)
|...++++||||+++..+.-.+.. -..|..+.. ...++..+.+++..-.. .....
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~--t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS--TEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe--ecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 999999999999987654433333 233333322 33455555444322100 00000
Q ss_pred ------------------------------HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh--------------
Q 007879 357 ------------------------------QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------- 392 (586)
Q Consensus 357 ------------------------------~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~-------------- 392 (586)
....+...+......++|+|+-++..|+..+..+..
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 001112222223345899999999999888766631
Q ss_pred --------------cCC-------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE-
Q 007879 393 --------------AAL-------------KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN- 444 (586)
Q Consensus 393 --------------~~~-------------~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~- 444 (586)
.++ .++++|++|-+..+..+...|..|-++|+++|.+++.|+|.|.-++|+-
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~ 495 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTS 495 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeee
Confidence 011 2568999999999999999999999999999999999999987666651
Q ss_pred ---eC----CCCChhHHHHHhhhcccCCC--cceEEEEecc
Q 007879 445 ---YA----CPRDLTSYVHRVGRTARAGR--EGYAVTFVTD 476 (586)
Q Consensus 445 ---~~----~p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~ 476 (586)
++ ..-++..|.|+.|||||.|. .|.++++..+
T Consensus 496 l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 496 LSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 22 23378999999999999885 4888887443
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.6e-27 Score=257.05 Aligned_cols=332 Identities=21% Similarity=0.234 Sum_probs=250.2
Q ss_pred CCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhc----C--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 131 NLSRPLLRACE-ALGYSKPTPIQAACIPLALT----G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 131 ~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~il~----g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+......+. .++|. -|+-|..||..+.. + -|-|+||--|.|||.+++=+++.++..+ .+|.|||
T Consensus 578 ~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G------KQVAvLV 650 (1139)
T COG1197 578 PPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG------KQVAVLV 650 (1139)
T ss_pred CCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC------CeEEEEc
Confidence 44444444443 45665 79999999999876 3 3789999999999999877777776543 3699999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhc----CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
||.-||.|.++.++.-....++++..+..-.+.+++...+. +..||||+|. .+|.. .+.+.++.++||||
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~k--dv~FkdLGLlIIDE 724 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSK--DVKFKDLGLLIIDE 724 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhCC--CcEEecCCeEEEec
Confidence 99999999999999987888999999988888777665543 4589999993 22323 67889999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHH
Q 007879 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (586)
Q Consensus 280 ah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (586)
-|+ |.-.-++-++.+..+.-++-||||+-|....+.-..+.+--.+...+....+ .+.++. ......-..
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p---V~T~V~--~~d~~~ire 794 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP---VKTFVS--EYDDLLIRE 794 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc---eEEEEe--cCChHHHHH
Confidence 999 5555566666677788899999999888777666655553333332222211 122221 112222222
Q ss_pred HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC
Q 007879 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (586)
Q Consensus 360 ~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 437 (586)
++..-+. .++++...+|..+..+.++..|... ..++++.||.|+..+-..++..|.+|+++|||||.+++.|||||
T Consensus 795 AI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 795 AILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred HHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCC
Confidence 2222222 3678888899999999999988766 56799999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC-ChhHHHHHhhhcccCCCcceEEEEeccCc------HHHHHHHHH
Q 007879 438 GVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAIAK 487 (586)
Q Consensus 438 ~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d------~~~~~~i~~ 487 (586)
+++++|..+... -.++..|..||+||..+.|+||.++.+.. ...++.|.+
T Consensus 873 nANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 873 NANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 999988765443 57889999999999999999999998642 344555554
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.4e-28 Score=262.10 Aligned_cols=312 Identities=18% Similarity=0.201 Sum_probs=223.5
Q ss_pred CcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCce
Q 007879 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIR 226 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~-l~~~~~~~ 226 (586)
-+....+++..+.++.-++++|+||||||++....+++..+ ..++++.++.|+|..|.-+++.+.+ +....|-.
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 45566677788888889999999999999975555555543 2345799999999888777766554 33334555
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc-cCCCcHH-HHHHHHHHCCCCCc
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFSA-EIHELVRLCPKRRQ 304 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l-~~~~~~~-~i~~i~~~~~~~~q 304 (586)
|++..-.. ......+.|-++|.|.|++.+.+ +..|+.+++|||||||+- ++.++.- .+..++...+...+
T Consensus 126 VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 126 VGYSIRFE------SKVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeEEEEee------ccCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 55544332 22345678999999999999987 456899999999999964 4544433 34455666777799
Q ss_pred EEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEe-cch-hhhHHHHHHHHhhccCCceEEEEeccHHH
Q 007879 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQA 382 (586)
Q Consensus 305 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~lIF~~s~~~ 382 (586)
+|+||||+..+ .+ ..++.+...+.+... .. .+.-.+.... ... .................+.+|||.+...+
T Consensus 198 iIimSATld~~--rf-s~~f~~apvi~i~GR-~f--PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~E 271 (845)
T COG1643 198 LIIMSATLDAE--RF-SAYFGNAPVIEIEGR-TY--PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271 (845)
T ss_pred EEEEecccCHH--HH-HHHcCCCCEEEecCC-cc--ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHH
Confidence 99999998743 23 344443333333211 11 1221111111 111 11222233333445558899999999999
Q ss_pred HHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCC-----------
Q 007879 383 AHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC----------- 447 (586)
Q Consensus 383 ~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~----------- 447 (586)
++++...|.. ..+.++++||.++..++.++++.-..|+.+|++||++++.+|.|++|++||.-+.
T Consensus 272 I~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 272 IERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 9999999987 3578999999999999999999888888889999999999999999999996442
Q ss_pred -------CCChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 448 -------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 448 -------p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
|-|.++..||.|||||.+ +|.||.+|+..+.
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred ceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 337788899999999986 9999999997543
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.6e-29 Score=254.18 Aligned_cols=321 Identities=20% Similarity=0.240 Sum_probs=238.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.+.|+|..+|..+-++.+++|.|.|.+|||.++-.++...+... + ||++..|-++|.+|-++.+..-.. .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-Q-----RVIYTSPIKALSNQKYREl~~EF~----D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-Q-----RVIYTSPIKALSNQKYRELLEEFK----D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc-C-----eEEeeChhhhhcchhHHHHHHHhc----c
Confidence 48999999999999999999999999999999877776665432 2 699999999999999999887433 3
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEE
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i 306 (586)
|++.+|+.+. ...+..+|+|.+.|..+|.++..+ +..+.+||+||+|.|-+....-.+.+-+-++|.+.+.+
T Consensus 199 VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEv-mrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEV-MREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeecceee-------CCCCceeeeHHHHHHHHHhccchH-hheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 5667777654 455689999999999999886433 78899999999999998877777777788899999999
Q ss_pred EEeecCchhHH--HHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEec------------chhhhHHH-------------
Q 007879 307 LFSATLTEDVD--ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR------------MREVNQEA------------- 359 (586)
Q Consensus 307 ~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------- 359 (586)
++|||+|+... +++...-..|..+.. ...+|..+.|+...... +.+..-..
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999987643 344444444544433 34456666665432110 11111111
Q ss_pred ------------------------HHHHHhhccCCceEEEEeccHHHHHHHHHHHhh-----------------------
Q 007879 360 ------------------------VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL----------------------- 392 (586)
Q Consensus 360 ------------------------~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~----------------------- 392 (586)
.+...+-.....++|||+-++++|+.++-.+..
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 112222222345899999999999988766632
Q ss_pred ----------------cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCC-------
Q 007879 393 ----------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------- 449 (586)
Q Consensus 393 ----------------~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~------- 449 (586)
..-.++++|+++-+--+.-+.-.|.+|-+++|+||..++.|+|.|.-++|+---.-+
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 123578999999999999999999999999999999999999998766665311111
Q ss_pred -ChhHHHHHhhhcccCCC--cceEEEEeccC-cHHHHHHHHH
Q 007879 450 -DLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIAK 487 (586)
Q Consensus 450 -s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~-d~~~~~~i~~ 487 (586)
+.-.|+|+.|||||.|. .|.|++++... +....+.+.+
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~k 550 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLK 550 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhc
Confidence 56789999999999885 58888888753 4455555443
No 101
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.6e-28 Score=246.83 Aligned_cols=313 Identities=14% Similarity=0.131 Sum_probs=216.8
Q ss_pred CcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH-HHhhcCCce
Q 007879 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE-KIAQFTDIR 226 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~-~l~~~~~~~ 226 (586)
.+.+-.+++..+..++-+|+.|+||||||++....++++.+.. .+++.+..|+|..|.-+++... +.....|-.
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~-----~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS-----SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc-----CCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 4556677888888899999999999999986333333332222 3359999999988887765544 333445556
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc-CCCcH-HHHHHHHHHCCCCCc
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFS-AEIHELVRLCPKRRQ 304 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-~~~~~-~~i~~i~~~~~~~~q 304 (586)
|++...-.+. ....+.|.++|.|.|++.+.. +..|+.+++||+||||.-. ..+.. -.++++++. ++..+
T Consensus 127 VGY~IRFed~------ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~Lk 197 (674)
T KOG0922|consen 127 VGYTIRFEDS------TSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLK 197 (674)
T ss_pred eeeEEEeccc------CCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCce
Confidence 6555433221 233468999999999998876 4568999999999999632 22211 122222222 34578
Q ss_pred EEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEec-chhhhHHHHHHHHhhccCCceEEEEeccHHHH
Q 007879 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383 (586)
Q Consensus 305 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~ 383 (586)
+|+||||+..+ .+..++.....+.+.. . ...+...+..-+. ............+....+.+.+|||.++.+++
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~G-R--~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPG-R--TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecC-C--CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 99999999733 3344444422232221 1 1122222222111 11122233445556667788999999999999
Q ss_pred HHHHHHHhhc----CC----ceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC--------C
Q 007879 384 HRLKILFGLA----AL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA--------C 447 (586)
Q Consensus 384 ~~l~~~l~~~----~~----~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~--------~ 447 (586)
+.+...|... +- -+.++||.++..++.+++..-..|..+|+++|++++..+.|+|+.+||.-+ +
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9998888654 11 257899999999999999999999999999999999999999999999633 2
Q ss_pred ----------CCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 448 ----------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 448 ----------p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
|-|..+..||.|||||.| +|+|+.+|+..+...
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 447889999999999987 999999999876543
No 102
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.8e-27 Score=252.25 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=110.6
Q ss_pred hhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 007879 355 VNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (586)
Q Consensus 355 ~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 432 (586)
..+...+...+. ...+.++||||+|+..++.|+.+|...++++..||+ .+.+|...+..|..+...|+|||++|+|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 345556666553 336789999999999999999999999999999997 6889999999999999999999999999
Q ss_pred cCCCC---Ccc-----EEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 433 GLDII---GVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 433 Gldi~---~v~-----~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
|+||+ +|. +||++..|.|...|.|++|||||+|.+|.+++|++..|.-+
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 99998 554 45999999999999999999999999999999999877543
No 103
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=5.9e-27 Score=239.43 Aligned_cols=339 Identities=19% Similarity=0.206 Sum_probs=229.7
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
+.++..| +..+.+||++++.|+.. +...|+...||.|||++ .+..|..+.+.++- . .++|||||.
T Consensus 196 ~~vPg~I--------~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~-~-~paLIVCP~ 264 (923)
T KOG0387|consen 196 FKVPGFI--------WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL-T-KPALIVCPA 264 (923)
T ss_pred ccccHHH--------HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc-c-CceEEEccH
Confidence 4566666 34688999999999875 67889999999999987 46666666666432 2 469999996
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCChH--------HHHH-----HhcCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK--------MQET-----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.+..||.+.+..| ++.+++.++++..+.. .... .......|+|+|+..+.-. ...+.-..|
T Consensus 265 -Tii~qW~~E~~~w--~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W 338 (923)
T KOG0387|consen 265 -TIIHQWMKEFQTW--WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILW 338 (923)
T ss_pred -HHHHHHHHHHHHh--CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---Ccccccccc
Confidence 5667888888886 4678888888876521 1111 1223457999998887542 223444579
Q ss_pred eEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc-hhHHHHHHHh-----------------cCCCeEEeeCC
Q 007879 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKLS-----------------LTKPLRLSADP 334 (586)
Q Consensus 273 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~-~~~~~~~~~~-----------------~~~~~~~~~~~ 334 (586)
+++|+||+|++-|.. ..+...+..++ ..+.|++|+|+- +++.++..++ +..|+......
T Consensus 339 ~y~ILDEGH~IrNpn--s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggya 415 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPN--SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYA 415 (923)
T ss_pred cEEEecCcccccCCc--cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccC
Confidence 999999999998864 33333344443 455688888864 3333332211 00011100000
Q ss_pred C---------------------------------CCCCCCceEEEEEEe-------------------------------
Q 007879 335 S---------------------------------AKRPSTLTEEVVRIR------------------------------- 350 (586)
Q Consensus 335 ~---------------------------------~~~~~~~~~~~~~~~------------------------------- 350 (586)
. ....+.-...++.+.
T Consensus 416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~G 495 (923)
T KOG0387|consen 416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSG 495 (923)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceec
Confidence 0 000000000011100
Q ss_pred -----------------------------cchhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHh-hcCCceE
Q 007879 351 -----------------------------RMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFG-LAALKAA 398 (586)
Q Consensus 351 -----------------------------~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~-~~~~~~~ 398 (586)
......+...+..++. ...+.++|+|..++.+...|..+|. ..+++++
T Consensus 496 i~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysyl 575 (923)
T KOG0387|consen 496 IDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYL 575 (923)
T ss_pred hHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEE
Confidence 0111223344444443 3346799999999999999999999 6899999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCc--EEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcce--EEEEe
Q 007879 399 ELHGNLTQAQRLEALELFRKQHVD--FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFV 474 (586)
Q Consensus 399 ~l~~~~~~~~r~~~~~~f~~g~~~--vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~ 474 (586)
.++|.++...|..+++.|+++... +|++|.+++.|+|+.+++.||.|||.|||.+..|..-||.|.|++.. +|.|+
T Consensus 576 RmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~ 655 (923)
T KOG0387|consen 576 RMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLM 655 (923)
T ss_pred EecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEe
Confidence 999999999999999999987543 58999999999999999999999999999999999999999998754 55566
Q ss_pred ccC---cHHHHHHHHHH
Q 007879 475 TDN---DRSLLKAIAKR 488 (586)
Q Consensus 475 ~~~---d~~~~~~i~~~ 488 (586)
+.. +.-+.++|.+.
T Consensus 656 t~gTIEEkiY~rQI~Kq 672 (923)
T KOG0387|consen 656 TAGTIEEKIYHRQIFKQ 672 (923)
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 654 44455555543
No 104
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=250.62 Aligned_cols=346 Identities=19% Similarity=0.219 Sum_probs=247.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhhhhhHHHHhcCCC-----CCCCeEEEEEcCc
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTPT 205 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~vlil~Pt 205 (586)
++.+-..++ .|...+.++|..+...++.+ .++++|||||+|||-.+++-+++.+-.+.. ...+.++++++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444444433 36677999999999999987 488999999999999999999998876433 1235589999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCc-CccCceEEEEeCccccc
Q 007879 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLL 284 (586)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~-~l~~~~~lViDEah~l~ 284 (586)
.+|+..|...+.+.....|++|.-.+|+....... ...+.|+|+||+..--.-++.... ..+-++++|+||.|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999999988887788899999999986644322 234689999999874333332222 23457899999999885
Q ss_pred CCCcHHHHHHH----HH---HCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhH
Q 007879 285 ELGFSAEIHEL----VR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (586)
Q Consensus 285 ~~~~~~~i~~i----~~---~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (586)
+. ..+.+..+ .+ .-....+++++|||+|+-. +.......++..+.......+|..+.|.++.+.......+
T Consensus 451 Dd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~ 528 (1674)
T KOG0951|consen 451 DD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKR 528 (1674)
T ss_pred cc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEeccccCCchHH
Confidence 43 22333222 22 2234678999999998532 2222222223333333455678889999888765544443
Q ss_pred H-----HHHHHHhhccCCceEEEEeccHHHHHHHHHHHh-------------------------------------hcCC
Q 007879 358 E-----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG-------------------------------------LAAL 395 (586)
Q Consensus 358 ~-----~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~-------------------------------------~~~~ 395 (586)
. ....+.+.....+++|||+.++++....++.++ ...+
T Consensus 529 ~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpy 608 (1674)
T KOG0951|consen 529 FQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPY 608 (1674)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhc
Confidence 2 334455566667999999999887776665553 1136
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE----EeCC------CCChhHHHHHhhhcccCC
Q 007879 396 KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYAC------PRDLTSYVHRVGRTARAG 465 (586)
Q Consensus 396 ~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~~~------p~s~~~y~Qr~GR~gR~g 465 (586)
.++.+|++|+..+|..+...|.+|.++|||+|-.+++|+|+|+-+++| -|++ +.+|.+.+||.|||||.+
T Consensus 609 gfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 609 GFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred cceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 789999999999999999999999999999999999999999877776 2554 337999999999999966
Q ss_pred C--cceEEEEeccCcHHHHHH
Q 007879 466 R--EGYAVTFVTDNDRSLLKA 484 (586)
Q Consensus 466 ~--~g~~~~l~~~~d~~~~~~ 484 (586)
- .|..++.....+..+...
T Consensus 689 ~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 689 YDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred cCcCCceeeccCchHhhhhHH
Confidence 3 455555555555444433
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.5e-26 Score=213.76 Aligned_cols=309 Identities=20% Similarity=0.234 Sum_probs=219.0
Q ss_pred CCcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
++++.|+.+-..++. .++.|++|-||+|||.+ +.+.++..+..+ .++.|..|+...|..++..++. .|
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G-----~~vciASPRvDVclEl~~Rlk~--aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG-----GRVCIASPRVDVCLELYPRLKQ--AF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC-----CeEEEecCcccchHHHHHHHHH--hh
Confidence 699999998877665 57999999999999986 577777776653 4799999999999999999987 46
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~ 302 (586)
.+..+.+++|+..... . ..++|+|..+|+++-. .++++||||+|.+.-..-......+.+.....
T Consensus 169 ~~~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSYF------R-APLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchhc------c-ccEEEEehHHHHHHHh--------hccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 6788889999865532 1 5899999999988543 46789999999976433233334444555566
Q ss_pred CcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhh-H---HHHHHHHhh--ccCCceEEEE
Q 007879 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN-Q---EAVLLSLCS--KTFTSKVIIF 376 (586)
Q Consensus 303 ~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~~~--~~~~~~~lIF 376 (586)
.-+|++|||++..+..-+...-..++.+. ......+...-.++.+....... + ...+..++. ...+.+++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~~~klp--~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLRILKLP--ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCeeEeecc--hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 77899999999887766544322222221 12222222222233332221111 1 123333433 3346899999
Q ss_pred eccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCC--CChh
Q 007879 377 SGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP--RDLT 452 (586)
Q Consensus 377 ~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p--~s~~ 452 (586)
+++....+.++..|+.. ...+...|+. ...|.+..+.|++|+..+||+|.+++||+.+|+|+++|.-.-. .+.+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999433 3456778874 4678899999999999999999999999999999997654333 5788
Q ss_pred HHHHHhhhcccCC--CcceEEEEeccCcHHHH
Q 007879 453 SYVHRVGRTARAG--REGYAVTFVTDNDRSLL 482 (586)
Q Consensus 453 ~y~Qr~GR~gR~g--~~g~~~~l~~~~d~~~~ 482 (586)
..+|.+||+||.- ..|.++.|-......+.
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 9999999999933 34777666555444433
No 106
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=5.5e-26 Score=236.06 Aligned_cols=320 Identities=21% Similarity=0.188 Sum_probs=230.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. +|++.|.-+.-.++.|+ |+.+.||+|||+++.+|++...+.+. .|.|++|+..||.|-++++..+..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~------~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGR------RVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCC------CeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 455 58999999999998886 88999999999999999988876544 4899999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCC-----cCccCceEEEEeCcccccC-----------
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLLE----------- 285 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~-----~~l~~~~~lViDEah~l~~----------- 285 (586)
.|++++++.++.+.......+ .+||+++|...| +++|+.+.. .....+.++||||+|.++-
T Consensus 146 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 999999999988877666555 479999998876 555554321 2246688999999998541
Q ss_pred ----CCcHHHHHHHHHHCC-------------------------------------------------------------
Q 007879 286 ----LGFSAEIHELVRLCP------------------------------------------------------------- 300 (586)
Q Consensus 286 ----~~~~~~i~~i~~~~~------------------------------------------------------------- 300 (586)
......+..+...+.
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 000000111110000
Q ss_pred ---------------------------------------------------------CCCcEEEEeecCchhHHHHHHHh
Q 007879 301 ---------------------------------------------------------KRRQTMLFSATLTEDVDELIKLS 323 (586)
Q Consensus 301 ---------------------------------------------------------~~~q~i~~SAT~~~~~~~~~~~~ 323 (586)
...++.+||+|......++...+
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 01357889999887777777666
Q ss_pred cCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEec
Q 007879 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (586)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~ 401 (586)
--..+.+....+..+...-. ..+. ....+..++...+. ...+.||||.|.|....+.++.+|...+++...|+
T Consensus 384 ~l~Vv~IPtnkp~~R~d~~d---~iy~--t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 384 DLGVSVIPPNKPNIREDEAD---RVYA--TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred CCcEEECCCCCCceeecCCC---ceEe--CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 54433332222111111111 1111 12334444433332 34688999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcC-CCcEEEecCcccccCCCC---------------CccEEEEeCCCCChhHHHHHhhhcccCC
Q 007879 402 GNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII---------------GVQTVINYACPRDLTSYVHRVGRTARAG 465 (586)
Q Consensus 402 ~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~---------------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 465 (586)
+.....+-.-+-+ .| .-.|.|||++|+||.||. |--|||....|.|..-..|..||+||.|
T Consensus 459 Ak~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 459 AKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred cCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 8755444222222 34 346999999999999995 3348999999999999999999999999
Q ss_pred CcceEEEEeccCcHHH
Q 007879 466 REGYAVTFVTDNDRSL 481 (586)
Q Consensus 466 ~~g~~~~l~~~~d~~~ 481 (586)
.+|.+..|++-.|.-+
T Consensus 536 DpGss~f~lSleDdl~ 551 (764)
T PRK12326 536 DPGSSVFFVSLEDDVV 551 (764)
T ss_pred CCCceeEEEEcchhHH
Confidence 9999999999877544
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1e-26 Score=260.87 Aligned_cols=305 Identities=19% Similarity=0.251 Sum_probs=195.3
Q ss_pred CCcHHHHHHHHHHhc-----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 147 KPTPIQAACIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~-----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.++++|.+|+..+.. .+.+|++++||||||.++ +.++..++.... ..+||||+|+++|+.|+.+.+..+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~~---~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAKR---FRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcCc---cCeEEEEecHHHHHHHHHHHHHhccc
Confidence 489999999987753 367899999999999874 555555554322 24799999999999999999887532
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc----CCcCccCceEEEEeCcccccC---------CC-
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLE---------LG- 287 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~----~~~~l~~~~~lViDEah~l~~---------~~- 287 (586)
..+..+..+++..... .........|+|+|++.|...+... ..+.+..+++||+||||+... .+
T Consensus 489 ~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 EGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 2111111111111111 1112334789999999997765321 124567899999999999531 01
Q ss_pred -----cHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCe---------------------EEeeCCCC-----
Q 007879 288 -----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL---------------------RLSADPSA----- 336 (586)
Q Consensus 288 -----~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~---------------------~~~~~~~~----- 336 (586)
+...+..++.++. ...|+|||||......+ ++.|+ .+......
T Consensus 567 ~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~----FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEI----FGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred chhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHH----hCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 2345666666543 45799999997543222 12222 11110000
Q ss_pred CCCCCc------eEEE--EEEecc---h--hhhH-------H----HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh
Q 007879 337 KRPSTL------TEEV--VRIRRM---R--EVNQ-------E----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (586)
Q Consensus 337 ~~~~~~------~~~~--~~~~~~---~--~~~~-------~----~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~ 392 (586)
.....+ ...+ ...... . ...+ . ..+...+....++++||||.+..+|+.+...|..
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 000000 0000 000000 0 0000 0 0111222223357999999999999998887754
Q ss_pred c------C---CceEEecCCCCHHHHHHHHHHHhcCCC-cEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcc
Q 007879 393 A------A---LKAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (586)
Q Consensus 393 ~------~---~~~~~l~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~g 462 (586)
. + ..+..+||.++ ++..+++.|+++.. .|+|+++++.+|+|+|.|.+||++.++.|...|.||+||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 2 2 24567888875 56789999999876 68999999999999999999999999999999999999999
Q ss_pred cCC
Q 007879 463 RAG 465 (586)
Q Consensus 463 R~g 465 (586)
|..
T Consensus 799 R~~ 801 (1123)
T PRK11448 799 RLC 801 (1123)
T ss_pred cCC
Confidence 954
No 108
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=235.33 Aligned_cols=314 Identities=17% Similarity=0.189 Sum_probs=212.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH-HHHhhc
Q 007879 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI-EKIAQF 222 (586)
Q Consensus 144 ~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~-~~l~~~ 222 (586)
.....+++-.+.+.++..++-+||.|.||||||++ +|-+ |...+-...+.++-+..|+|..|..++..+ ..+...
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQy--L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQY--LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHH--HHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 44456788888999999999999999999999985 5543 222222222335999999999999876544 444333
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc-cCCCcH-HHHHHHHHHCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFS-AEIHELVRLCP 300 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l-~~~~~~-~~i~~i~~~~~ 300 (586)
.|..|++-..- .......+-|-++|.|+|++.+.. ...|.++++|||||||.- +..+.. ..+..|. .++
T Consensus 338 LG~eVGYsIRF------EdcTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~R 408 (902)
T KOG0923|consen 338 LGHEVGYSIRF------EDCTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFR 408 (902)
T ss_pred cccccceEEEe------ccccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhC
Confidence 34334332221 111223456889999999998877 467899999999999963 333222 2223333 344
Q ss_pred CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecch-hhhHHHHHHHHhhccCCceEEEEecc
Q 007879 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQEAVLLSLCSKTFTSKVIIFSGT 379 (586)
Q Consensus 301 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~lIF~~s 379 (586)
+..+++++|||+..+ .+ ..++.+...+.+ +....|..+ ++...+..+ .......++.++...+.+-+|||...
T Consensus 409 pdLKllIsSAT~DAe--kF-S~fFDdapIF~i-PGRRyPVdi--~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltG 482 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE--KF-SAFFDDAPIFRI-PGRRYPVDI--FYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTG 482 (902)
T ss_pred CcceEEeeccccCHH--HH-HHhccCCcEEec-cCcccceee--ecccCCchhHHHHHHhhheeeEeccCCccEEEEecc
Confidence 688999999998643 22 344443322222 222222211 111111100 01111223334445567899999999
Q ss_pred HHHHHHHHHHHhhc---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC----
Q 007879 380 KQAAHRLKILFGLA---------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA---- 446 (586)
Q Consensus 380 ~~~~~~l~~~l~~~---------~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~---- 446 (586)
...++.....|... .+-++++|+.++...+..+++.-..|-.+|++||++|+..|.|++|.+||.-+
T Consensus 483 QeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ 562 (902)
T KOG0923|consen 483 QEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQ 562 (902)
T ss_pred HHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccc
Confidence 99888776666432 35688999999999999999999999999999999999999999999999533
Q ss_pred --------------CCCChhHHHHHhhhcccCCCcceEEEEeccC
Q 007879 447 --------------CPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (586)
Q Consensus 447 --------------~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 477 (586)
.|-|.++..||.|||||.| +|+|+.+|+.+
T Consensus 563 nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 563 NSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred cCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 2447778899999999998 99999999854
No 109
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=9.1e-27 Score=227.68 Aligned_cols=344 Identities=21% Similarity=0.230 Sum_probs=245.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEE-cCCCchh--HHHhhhhhHHHHhc-------------------------CCCCC
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGS-AITGSGK--TAAFALPTLERLLY-------------------------RPKRI 194 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~-~~TGsGK--T~~~~l~~l~~l~~-------------------------~~~~~ 194 (586)
..-..+|+.|.+.+..+.+++|++.. +..+.|+ +-.|++++++|+++ ++++.
T Consensus 212 K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 212 KKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 34457999999999999999999853 3334455 56799999999885 34567
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc---------eEEEEeCC---------CChHHHHHHh-------------
Q 007879 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDI---------RCCLVVGG---------LSTKMQETAL------------- 243 (586)
Q Consensus 195 ~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~---------~~~~~~~~---------~~~~~~~~~~------------- 243 (586)
++|+||||||+|+.|..+.+.+..+.....- +..--+++ ..+......+
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 8999999999999999999999887433211 00000111 0011111111
Q ss_pred -----------cCCCcEEEECcHHHHHHHHhcCC----c-CccCceEEEEeCccccc--CCCcHHHHHHHHHHCCCC---
Q 007879 244 -----------RSMPDIVVATPGRMIDHLRNSMS----V-DLDDLAVLILDEADRLL--ELGFSAEIHELVRLCPKR--- 302 (586)
Q Consensus 244 -----------~~~~~Ili~Tp~~l~~~l~~~~~----~-~l~~~~~lViDEah~l~--~~~~~~~i~~i~~~~~~~--- 302 (586)
....||+||+|..|..++.+... + .|++|.++|||.||.++ +|.+...+...++.+|..
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 12359999999999999974321 2 37899999999999887 666667777777777743
Q ss_pred ------------------CcEEEEeecCchhHHHHHHHhcCCC---eEEeeC----CCCCCCCCceEEEEEEecchhhh-
Q 007879 303 ------------------RQTMLFSATLTEDVDELIKLSLTKP---LRLSAD----PSAKRPSTLTEEVVRIRRMREVN- 356 (586)
Q Consensus 303 ------------------~q~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 356 (586)
+|+++||+-..+.+..++..+|.+- +..... ........+.|.+.++.......
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 5999999999999999988887652 111111 11112223444444443222211
Q ss_pred ---HHHHHHH-H---hhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc
Q 007879 357 ---QEAVLLS-L---CSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (586)
Q Consensus 357 ---~~~~l~~-~---~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 429 (586)
+...+.. + +.......+|||++++-+..+++++|+...+++..+|.+.++..-.++...|-.|+..||+.|..
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 1211111 1 12223467899999999999999999999999999999999999999999999999999999999
Q ss_pred c--cccCCCCCccEEEEeCCCCChhHHHHHh---hhcccCC----CcceEEEEeccCcHHHHHHHH
Q 007879 430 A--ARGLDIIGVQTVINYACPRDLTSYVHRV---GRTARAG----REGYAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 430 ~--~~Gldi~~v~~VI~~~~p~s~~~y~Qr~---GR~gR~g----~~g~~~~l~~~~d~~~~~~i~ 486 (586)
+ .+..+|.||+.||+|.+|.+|..|...+ +|+.-.| ..-.|.++|++.|.-.|..+.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 8 5999999999999999999999996555 4443222 234789999999987777654
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.7e-25 Score=229.36 Aligned_cols=353 Identities=25% Similarity=0.350 Sum_probs=241.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|+ .|+..|......++.|++.-+.||||.|||. |.+.+-..+... +.+++||+||+.|+.|+++.+.+++..
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~k-----gkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAKK-----GKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHhc-----CCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 355 7999999999999999999999999999996 334333332222 237999999999999999999999876
Q ss_pred CC-ceEEE-EeCCCChHHHH----HHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-----------
Q 007879 223 TD-IRCCL-VVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 285 (586)
Q Consensus 223 ~~-~~~~~-~~~~~~~~~~~----~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~----------- 285 (586)
.+ ..+.+ +|+..+..... +.-.++.||+|+|.+.|...+.... -.++++|++|.+|.++-
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS---KLKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCCCEEEEccHHHHHhccccHHHHHHH
Confidence 55 44444 56665554433 2334579999999998877666522 24789999999998763
Q ss_pred CCcHHH-------HHHHHHH------------------------CCCCCcEEEEeecCchhH--HHHHHHhcCCCeEEee
Q 007879 286 LGFSAE-------IHELVRL------------------------CPKRRQTMLFSATLTEDV--DELIKLSLTKPLRLSA 332 (586)
Q Consensus 286 ~~~~~~-------i~~i~~~------------------------~~~~~q~i~~SAT~~~~~--~~~~~~~~~~~~~~~~ 332 (586)
.||... +..+... -.+..++++.|||..+.- ..+.+..++- .+
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----ev 304 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EV 304 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----cc
Confidence 222221 1111111 113457899999987543 2233333321 11
Q ss_pred CCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEecc---HHHHHHHHHHHhhcCCceEEecCCCCHHHH
Q 007879 333 DPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT---KQAAHRLKILFGLAALKAAELHGNLTQAQR 409 (586)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s---~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r 409 (586)
........++...++.. .....+..+++.. +.+.|||++. ++.++.++.+|...|+++..+|+. .
T Consensus 305 G~~~~~LRNIvD~y~~~------~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 305 GSGGEGLRNIVDIYVES------ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred CccchhhhheeeeeccC------ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----c
Confidence 11111222333333221 2233344455543 5688999999 999999999999999999999983 2
Q ss_pred HHHHHHHhcCCCcEEEec----CcccccCCCCC-ccEEEEeCCCC-----------------------------------
Q 007879 410 LEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACPR----------------------------------- 449 (586)
Q Consensus 410 ~~~~~~f~~g~~~vLvaT----~~~~~Gldi~~-v~~VI~~~~p~----------------------------------- 449 (586)
...++.|..|++++||++ .++.||||+|. ++++|+|+.|.
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~rf~l~~~~~~~~~~l~~ls~~~~~~~~~~~~~~~ 452 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFRFRLTLEESDPKRLLYLLSALSDREARSRLEGLA 452 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCceeeeccccccchHHHHHHHHhhhhhhhhhhhHHHH
Confidence 677999999999999986 46789999988 79999999881
Q ss_pred ---------------------------------------------------------------------------ChhHH
Q 007879 450 ---------------------------------------------------------------------------DLTSY 454 (586)
Q Consensus 450 ---------------------------------------------------------------------------s~~~y 454 (586)
++.+|
T Consensus 453 ~rl~~~ir~~~~~~l~~~~~l~~~~~~~~~~~e~v~~~~~~~~e~L~~e~~~k~i~e~~~~vl~~~eg~~yi~vPD~~TY 532 (1187)
T COG1110 453 GRLRRIIRRLSPYSLLKLMKLKKRPDVDRHLAEEVRTLAEFVRELLKDEERVKKIAESADLVLVYEEGELYLEVPDVRTY 532 (1187)
T ss_pred HHHHHHHhhhcHHHHHhHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCceEEEecCCceEEEecChhhh
Confidence 46678
Q ss_pred HHHhhhccc--CCC--cceEEEEeccCcHHHHHHHHHHhc---CccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 007879 455 VHRVGRTAR--AGR--EGYAVTFVTDNDRSLLKAIAKRAG---SKLKSRIVAEQSITKWSKIIEQMEDQVAAILQE 523 (586)
Q Consensus 455 ~Qr~GR~gR--~g~--~g~~~~l~~~~d~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (586)
+|..||+.| +|. .|.+++++ +|...++.+.+++. ..+.-..+.+..+.++...+++..+.+...+..
T Consensus 533 IQaSGRtSRLyaGglTkGlSvvlv--dd~~~f~~L~krm~~~~~e~e~k~l~evdL~el~reIdEdR~~~r~~~~g 606 (1187)
T COG1110 533 IQASGRTSRLYAGGLTKGLSVVLV--DDPEVFEGLIKRMSWKFIEIEFKEISEVDLEELLREIDEDRERVRRVLEG 606 (1187)
T ss_pred eeccchHhhhhccccccceEEEEe--cCHHHHHHHHHHHHHhhcccceeeccccCHHHHHHHHHhhHHHHHHHHhc
Confidence 999999999 554 45555554 55667777777654 233345566666666666666666666655554
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1e-25 Score=204.81 Aligned_cols=165 Identities=37% Similarity=0.562 Sum_probs=141.6
Q ss_pred cHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEE
Q 007879 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (586)
Q Consensus 149 ~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~ 228 (586)
||+|.++++.+.+|+++++.||||+|||++|+++++..+...+ ..+++|++|+++|+.|+.+.+..+....++++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~----~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK----DARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS----SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC----CceEEEEeecccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999998887652 227999999999999999999999888788999
Q ss_pred EEeCCCChH-HHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCC--CCCcE
Q 007879 229 LVVGGLSTK-MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQT 305 (586)
Q Consensus 229 ~~~~~~~~~-~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~--~~~q~ 305 (586)
.++++.... .....+..+++|+|+||++|...+.... ..+.++++||+||+|.+..+++...+..+...+. .+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhccccccc-cccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 999988765 4444555679999999999999998743 3667799999999999999888888888888773 35899
Q ss_pred EEEeecCchhHHH
Q 007879 306 MLFSATLTEDVDE 318 (586)
Q Consensus 306 i~~SAT~~~~~~~ 318 (586)
+++|||+++.+..
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999966553
No 112
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.9e-24 Score=226.45 Aligned_cols=320 Identities=18% Similarity=0.206 Sum_probs=230.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. .|+++|..+--.+..|+ |+.+.||+|||+++.+|++...+.+. .|.|++|+..||.|-++++..+..+
T Consensus 79 lGm-~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~------~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGK------GVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred hCC-CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCC------CEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 454 58888987777777666 99999999999999999987766544 4899999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCc-----CccCceEEEEeCccccc-C--------CC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-E--------LG 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~-----~l~~~~~lViDEah~l~-~--------~~ 287 (586)
.|++++++.++.+...+...+. ++|+++|..-| +++|+....+ -...+.++||||+|.++ + .|
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 9999999999888776666555 89999999887 6666654222 23788999999999964 1 00
Q ss_pred --------------cHHH------------------------------------HHHHH---------H---------H-
Q 007879 288 --------------FSAE------------------------------------IHELV---------R---------L- 298 (586)
Q Consensus 288 --------------~~~~------------------------------------i~~i~---------~---------~- 298 (586)
+... +..++ . .
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 0000 00000 0 0
Q ss_pred ------C------C-------------------------------------------------------------CCCcE
Q 007879 299 ------C------P-------------------------------------------------------------KRRQT 305 (586)
Q Consensus 299 ------~------~-------------------------------------------------------------~~~q~ 305 (586)
+ . ...++
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence 0 0 01256
Q ss_pred EEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHH
Q 007879 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAA 383 (586)
Q Consensus 306 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~ 383 (586)
.+||+|......++...+--..+.+.......+.. .... .+. ....+..++..-+. ...+.||||-+.|....
T Consensus 388 sGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D-~~d~--vy~--t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKD-FNDL--VYL--TAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred ccCCCCCHHHHHHHHHHhCCCEEECCCCCCccccc-CCCe--EEc--CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 78888887777777766655444443332222211 1111 111 22334444443332 44588999999999999
Q ss_pred HHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEecCcccccCCCC-------------------------
Q 007879 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII------------------------- 437 (586)
Q Consensus 384 ~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~------------------------- 437 (586)
+.|+.+|...+++..+|++.....+-.-+- ..| ...|.|||++|+||.||.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999999999875544333322 345 346999999999999994
Q ss_pred ------------CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 438 ------------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 438 ------------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
|--|||-...|.|..-..|..||+||.|.+|.+..|++-.|..+
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 33489999999999999999999999999999999999877443
No 113
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.1e-25 Score=223.76 Aligned_cols=312 Identities=18% Similarity=0.172 Sum_probs=209.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-Hhhc
Q 007879 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQF 222 (586)
Q Consensus 144 ~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~-l~~~ 222 (586)
.+...+..+.+.+..+..++-+++.++||||||.+....+++. +-...+.+.+..|+|..|.-+++.+.. +...
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 3445567778888888889999999999999998643333332 222344789999999999988766654 3222
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc-cCCCcHHHHHHHHHHCCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFSAEIHELVRLCPK 301 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l-~~~~~~~~i~~i~~~~~~ 301 (586)
.|-.+++...- .......+.|-++|.|.|++.... .-.|.++++||+||||.- ++....--+.+..-.-..
T Consensus 428 lG~~VGYsIRF------EdvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 428 LGDTVGYSIRF------EDVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred cccccceEEEe------eecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 34444333221 111223467899999999886544 345889999999999964 455444334444334456
Q ss_pred CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH---HhhccCCceEEEEec
Q 007879 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS---LCSKTFTSKVIIFSG 378 (586)
Q Consensus 302 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~lIF~~ 378 (586)
+.++|++|||+.. ..+...+.+-|... . +....|. .-.+.. ......-..++.. +......+.+|||.+
T Consensus 500 dlKliVtSATm~a--~kf~nfFgn~p~f~-I-pGRTyPV--~~~~~k--~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA--QKFSNFFGNCPQFT-I-PGRTYPV--EIMYTK--TPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred cceEEEeeccccH--HHHHHHhCCCceee-e-cCCccce--EEEecc--CchHHHHHHHHhhheEeeccCCCCCEEEecC
Confidence 7899999999863 33444343333322 2 1211221 111111 1112222222222 233445688999999
Q ss_pred cHHHHHHHHHHH----hh------cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC--
Q 007879 379 TKQAAHRLKILF----GL------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA-- 446 (586)
Q Consensus 379 s~~~~~~l~~~l----~~------~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~-- 446 (586)
..+.++-....+ .. .++.++.+++.|++.-+.++++.-..|..+++|||++|+..|.|+++.+||..+
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 877665444333 22 267899999999999999999999999999999999999999999999999744
Q ss_pred ----------------CCCChhHHHHHhhhcccCCCcceEEEEeccC
Q 007879 447 ----------------CPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (586)
Q Consensus 447 ----------------~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 477 (586)
.|.|.+..-||.|||||.| +|.||.+|+..
T Consensus 652 K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 652 KLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 3457777889999999987 99999999873
No 114
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=234.53 Aligned_cols=340 Identities=20% Similarity=0.265 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 131 NLSRPLLRACEALGYSKPTPIQAACI--PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~Q~~~i--~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
+++....-..+..|...++.||.+++ |.++.+++.|+.+||+.|||+++-+-++..++.+.+ .++.++|....
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr-----~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-----NVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh-----ceeEecceeeh
Confidence 44444444556789999999999997 778899999999999999999999999988887665 48999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC-CcCccCceEEEEeCcccccCCC
Q 007879 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLELG 287 (586)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~ 287 (586)
+..-...+..+....|+.+....|...+... .+.-+|.|||-++-...+.... .-.+..+++|||||.|.+.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 8888888888888889998888876655432 2345899999887654443210 1236678999999999999888
Q ss_pred cHHHHHHHHHH-----CCCCCcEEEEeecCchh--HHHHHHHhcCCCeEEeeCCCCCCCCCceEEE------EEEecchh
Q 007879 288 FSAEIHELVRL-----CPKRRQTMLFSATLTED--VDELIKLSLTKPLRLSADPSAKRPSTLTEEV------VRIRRMRE 354 (586)
Q Consensus 288 ~~~~i~~i~~~-----~~~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 354 (586)
....+..++.. .....|+|+||||+++. +..++...+ .. ...+|..+.... +.......
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~----y~----t~fRPv~L~E~ik~G~~i~~~~r~~~ 429 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFV----YT----TRFRPVPLKEYIKPGSLIYESSRNKV 429 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhh----ee----cccCcccchhccCCCcccccchhhHH
Confidence 66655555432 22346799999999853 233332221 11 111121111111 00000000
Q ss_pred h-------------hHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHh----------------------------
Q 007879 355 V-------------NQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFG---------------------------- 391 (586)
Q Consensus 355 ~-------------~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~---------------------------- 391 (586)
. .....+..++.. ..+..+||||+++..|+.++..+.
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 0 000112222221 124569999999999988865441
Q ss_pred ----------hcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEe---C-CCCChhHHHHH
Q 007879 392 ----------LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY---A-CPRDLTSYVHR 457 (586)
Q Consensus 392 ----------~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~---~-~p~s~~~y~Qr 457 (586)
.....+.++|++++..+|..+...|++|...|++||+.++.|+|+|..+++|-+ + ...+.-.|.||
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 112468899999999999999999999999999999999999999988888743 2 23467799999
Q ss_pred hhhcccCC--CcceEEEEeccCcHHHHHHHHH
Q 007879 458 VGRTARAG--REGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 458 ~GR~gR~g--~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
+|||||+| ..|.+++++...+...+..+..
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99999987 4599999999999776665543
No 115
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.94 E-value=2.2e-26 Score=244.99 Aligned_cols=329 Identities=19% Similarity=0.234 Sum_probs=222.8
Q ss_pred CCCcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 146 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
..++.||.+.+++++. +.++|+...+|.|||+. .+..|..++....- .+..||++|...+.. |.+.+..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~--~gpflvvvplst~~~-W~~ef~~w-- 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQI--HGPFLVVVPLSTITA-WEREFETW-- 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhc--cCCeEEEeehhhhHH-HHHHHHHH--
Confidence 5789999999999875 78999999999999976 46666666655432 224899999988766 45556554
Q ss_pred cCCceEEEEeCCCChHHHHHHh----cC-----CCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHH
Q 007879 222 FTDIRCCLVVGGLSTKMQETAL----RS-----MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i 292 (586)
+.+++.+++|........+.. .. .++++++|++.++.--. .+.--.|.+++|||||++.|.. ..+
T Consensus 443 -~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i~w~~~~vDeahrLkN~~--~~l 516 (1373)
T KOG0384|consen 443 -TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKIPWRYLLVDEAHRLKNDE--SKL 516 (1373)
T ss_pred -hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccCCcceeeecHHhhcCchH--HHH
Confidence 478888899987655443322 12 37899999998865322 2333468899999999998753 223
Q ss_pred HHHHHHCCCCCcEEEEeecCc-hhHHHHHHHh-cCCCeEEee--------------------------------CCCCCC
Q 007879 293 HELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRLSA--------------------------------DPSAKR 338 (586)
Q Consensus 293 ~~i~~~~~~~~q~i~~SAT~~-~~~~~~~~~~-~~~~~~~~~--------------------------------~~~~~~ 338 (586)
...+..+..+. .+++|+|+- +++.++..+. +..|..+.. ......
T Consensus 517 ~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 33344443333 477777764 3444443221 111111000 000000
Q ss_pred CCCceEEEEEEec---------------------------------------------------------chhhhHHHHH
Q 007879 339 PSTLTEEVVRIRR---------------------------------------------------------MREVNQEAVL 361 (586)
Q Consensus 339 ~~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~l 361 (586)
.+.-...++++.- .........+
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 0111111111110 0000000111
Q ss_pred H-------------HHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC---CCcE
Q 007879 362 L-------------SLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVDF 423 (586)
Q Consensus 362 ~-------------~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g---~~~v 423 (586)
. .++. +..+++||||.+.....+.|+.||...++.+-.|+|.+...-|..++++|+.. .+.+
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 1 1221 23478999999999999999999999999999999999999999999999974 4568
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcce--EEEEeccCc--HHHHHHHHH
Q 007879 424 LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFVTDND--RSLLKAIAK 487 (586)
Q Consensus 424 LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~~~~d--~~~~~~i~~ 487 (586)
|+||.+++.|||+..+++||+||..|||+..+|+..||+|+|++.. +|.|++.+. ..++.+...
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~ 823 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKL 823 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998755 677788753 445554443
No 116
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.2e-23 Score=221.46 Aligned_cols=320 Identities=19% Similarity=0.199 Sum_probs=229.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. +|++.|.-+.-.+..|+ |+.+.||-|||+++.+|++-..+.+. .|-|++..-.||..-++++..+..+
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk------gVhVVTvNdYLA~RDae~mg~vy~f 145 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK------GVIVSTVNEYLAERDAEEMGKVFNF 145 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC------ceEEEecchhhhhhhHHHHHHHHHH
Confidence 455 58999988887777776 89999999999999999977665543 3889999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCc-----CccCceEEEEeCccccc-CC--------C
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-EL--------G 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~-----~l~~~~~lViDEah~l~-~~--------~ 287 (586)
.|++|+++..+.........+ .+||+++|...| +++|+..... -...+.+.||||+|.++ +. |
T Consensus 146 LGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 146 LGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred hCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 999999999887777665554 489999999887 6777764322 24678899999999864 10 0
Q ss_pred -------cHHHHHHHHHHCC------------------------------------------------------------
Q 007879 288 -------FSAEIHELVRLCP------------------------------------------------------------ 300 (586)
Q Consensus 288 -------~~~~i~~i~~~~~------------------------------------------------------------ 300 (586)
+...+..+...+.
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 1111111111000
Q ss_pred --------------------------------------------------------CCCcEEEEeecCchhHHHHHHHhc
Q 007879 301 --------------------------------------------------------KRRQTMLFSATLTEDVDELIKLSL 324 (586)
Q Consensus 301 --------------------------------------------------------~~~q~i~~SAT~~~~~~~~~~~~~ 324 (586)
...++.+||+|....-.++...+-
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 012567888888777777776665
Q ss_pred CCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecC
Q 007879 325 TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402 (586)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~ 402 (586)
...+.+....+..+. ...-..+. ....+..++...+. ...+.||||.|.|....+.|+.+|...|+...+|++
T Consensus 384 l~Vv~IPTnkP~~R~---D~~d~iy~--t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 384 MRVNVVPTNKPVIRK---DEPDSIFG--TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred CCEEECCCCCCeeee---eCCCcEEE--cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 544443332221111 11101111 12333334433332 345889999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHhcC-CCcEEEecCcccccCCCCCc--------cEEEEeCCCCChhHHHHHhhhcccCCCcceEEEE
Q 007879 403 NLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDIIGV--------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (586)
Q Consensus 403 ~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~~v--------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l 473 (586)
... ++...+-. ..| ...|.|||++|+||.||.-- -|||....|.|..-..|..||+||.|.+|.+..|
T Consensus 459 k~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 459 KQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 644 33333322 456 45699999999999999532 2899999999999999999999999999999999
Q ss_pred eccCcHHH
Q 007879 474 VTDNDRSL 481 (586)
Q Consensus 474 ~~~~d~~~ 481 (586)
++-.|.-+
T Consensus 536 lSLeD~L~ 543 (925)
T PRK12903 536 ISLDDQLF 543 (925)
T ss_pred EecchHHH
Confidence 99877443
No 117
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.93 E-value=5.9e-24 Score=212.63 Aligned_cols=299 Identities=19% Similarity=0.211 Sum_probs=228.3
Q ss_pred cCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC-Cc--------eEE----------EEeCCCChHHHHHHhc-----
Q 007879 189 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DI--------RCC----------LVVGGLSTKMQETALR----- 244 (586)
Q Consensus 189 ~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~-~~--------~~~----------~~~~~~~~~~~~~~~~----- 244 (586)
.++++.++|+||||+|+|..|.++.+.+..+.... .+ ..+ .-.........+..+.
T Consensus 30 ~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~D 109 (442)
T PF06862_consen 30 FRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNND 109 (442)
T ss_pred hhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCcc
Confidence 36778999999999999999999999988876431 00 000 0000001111111111
Q ss_pred --------------------CCCcEEEECcHHHHHHHHhc----C-CcCccCceEEEEeCccccc--CCCcHHHHHHHHH
Q 007879 245 --------------------SMPDIVVATPGRMIDHLRNS----M-SVDLDDLAVLILDEADRLL--ELGFSAEIHELVR 297 (586)
Q Consensus 245 --------------------~~~~Ili~Tp~~l~~~l~~~----~-~~~l~~~~~lViDEah~l~--~~~~~~~i~~i~~ 297 (586)
..+|||||+|-.|...+... . .-.|++|+++|||.||.|+ ||.+...+...++
T Consensus 110 D~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 110 DCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLN 189 (442)
T ss_pred ceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhc
Confidence 23599999999999988741 1 2238999999999999765 8888888888888
Q ss_pred HCCCC---------------------CcEEEEeecCchhHHHHHHHhcCCC---eEEeeCCC-----CCCCCCceEEEEE
Q 007879 298 LCPKR---------------------RQTMLFSATLTEDVDELIKLSLTKP---LRLSADPS-----AKRPSTLTEEVVR 348 (586)
Q Consensus 298 ~~~~~---------------------~q~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~ 348 (586)
..|+. +|+|++|+..++++..+....|.+. +.+..... ......+.|.+.+
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r 269 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQR 269 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEE
Confidence 88852 6999999999999999999877763 22221111 2345577888888
Q ss_pred EecchhhhHHHHHH--------HHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC
Q 007879 349 IRRMREVNQEAVLL--------SLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419 (586)
Q Consensus 349 ~~~~~~~~~~~~l~--------~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g 419 (586)
+............. ..+. ....+++|||++|+-+..+++++|+..+++++.+|.++++.+..++...|..|
T Consensus 270 ~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G 349 (442)
T PF06862_consen 270 FDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG 349 (442)
T ss_pred ecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC
Confidence 77544333322221 1222 44568999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCcc--cccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCC------cceEEEEeccCcHHHHHHHHH
Q 007879 420 HVDFLIATDVA--ARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR------EGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 420 ~~~vLvaT~~~--~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~------~g~~~~l~~~~d~~~~~~i~~ 487 (586)
+.+|||.|..+ .+...|.|+++||+|++|..|..|...++..+.... ...|.++|+..|...|++|..
T Consensus 350 ~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 350 RKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred CceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 99999999998 599999999999999999999999999877665432 578999999999999888753
No 118
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=6.7e-24 Score=226.83 Aligned_cols=331 Identities=17% Similarity=0.169 Sum_probs=234.3
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
++...+.+....-...+..+..++..+.+++.++++|.||+|||++....++.....++ ...++++..|+|-.|.-+
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~---~~~~IicTQPRRIsAIsv 235 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG---AACNIICTQPRRISAISV 235 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC---CCCeEEecCCchHHHHHH
Confidence 34444444443344567788899999999999999999999999987777888877665 456799999999888888
Q ss_pred HHHHHHH-hhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc-cCCCcHH
Q 007879 213 HSMIEKI-AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFSA 290 (586)
Q Consensus 213 ~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l-~~~~~~~ 290 (586)
++++..- +...|-.|++-.+..+. ......+++||.|.|++.+.. ...+..+..||+||+|.- .+.+|.-
T Consensus 236 AeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflL 307 (924)
T KOG0920|consen 236 AERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLL 307 (924)
T ss_pred HHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHH
Confidence 7766542 22345555554443222 223368999999999999987 456889999999999965 4666776
Q ss_pred HHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCC----------------CCceEEE--------
Q 007879 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRP----------------STLTEEV-------- 346 (586)
Q Consensus 291 ~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~-------- 346 (586)
.+.+.+-...+..++|+||||+..+ ..+.++.....+.+....... ....+..
T Consensus 308 i~lk~lL~~~p~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~ 384 (924)
T KOG0920|consen 308 ILLKDLLPRNPDLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLR 384 (924)
T ss_pred HHHHHHhhhCCCceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccc
Confidence 6666665566889999999999733 334444433222221100000 0000000
Q ss_pred ---EE--EecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc-------CCceEEecCCCCHHHHHHHHH
Q 007879 347 ---VR--IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALE 414 (586)
Q Consensus 347 ---~~--~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~-------~~~~~~l~~~~~~~~r~~~~~ 414 (586)
+. ........-...+..++.....+.+|||.++...+..+...|... .+-+.++|+.++..++..++.
T Consensus 385 ~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~ 464 (924)
T KOG0920|consen 385 LARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFK 464 (924)
T ss_pred cccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcC
Confidence 00 000001111223344455666789999999999999999988532 356789999999999999999
Q ss_pred HHhcCCCcEEEecCcccccCCCCCccEEEE--------eCCCC----------ChhHHHHHhhhcccCCCcceEEEEecc
Q 007879 415 LFRKQHVDFLIATDVAARGLDIIGVQTVIN--------YACPR----------DLTSYVHRVGRTARAGREGYAVTFVTD 476 (586)
Q Consensus 415 ~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~~~p~----------s~~~y~Qr~GR~gR~g~~g~~~~l~~~ 476 (586)
....|..+|+++|++|+.+|.|++|-+||. ||+-. +...-.||.|||||. ++|.||.+|+.
T Consensus 465 ~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~ 543 (924)
T KOG0920|consen 465 RPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTR 543 (924)
T ss_pred CCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeech
Confidence 999999999999999999999999999996 44433 445667999999996 59999999987
Q ss_pred Cc
Q 007879 477 ND 478 (586)
Q Consensus 477 ~d 478 (586)
..
T Consensus 544 ~~ 545 (924)
T KOG0920|consen 544 SR 545 (924)
T ss_pred hh
Confidence 54
No 119
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.92 E-value=2.7e-22 Score=212.89 Aligned_cols=322 Identities=21% Similarity=0.200 Sum_probs=219.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|.. |++.|..+.-.+..| -|+.+.||.|||+++.+|++...+.+. .|.|++++..||.+-++++..+..+
T Consensus 73 lG~r-~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~------~VhVvT~NdyLA~RD~e~m~pvy~~ 143 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGK------GVHIVTVNDYLAKRDQEWMGQIYRF 143 (870)
T ss_pred hCCC-CCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCC------ceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4554 888888776666555 599999999999999999976555432 4999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCC-----cCccCceEEEEeCccccc-CC--------C
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-EL--------G 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~-----~~l~~~~~lViDEah~l~-~~--------~ 287 (586)
.|++++++.++.+...+...+. +||+++|...| +++|+.... .....+.++||||+|.++ +. |
T Consensus 144 LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg 221 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISG 221 (870)
T ss_pred cCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccC
Confidence 9999999988888776655444 79999998766 455554322 124678899999999854 10 0
Q ss_pred -------cHHHHHHHHHHC-------------------------------------------------------------
Q 007879 288 -------FSAEIHELVRLC------------------------------------------------------------- 299 (586)
Q Consensus 288 -------~~~~i~~i~~~~------------------------------------------------------------- 299 (586)
....+..+.+.+
T Consensus 222 ~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dY 301 (870)
T CHL00122 222 QSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHY 301 (870)
T ss_pred CCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcE
Confidence 000000010000
Q ss_pred -------------------------------------------------------CCCCcEEEEeecCchhHHHHHHHhc
Q 007879 300 -------------------------------------------------------PKRRQTMLFSATLTEDVDELIKLSL 324 (586)
Q Consensus 300 -------------------------------------------------------~~~~q~i~~SAT~~~~~~~~~~~~~ 324 (586)
....++.+||+|....-.++...+-
T Consensus 302 iV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~ 381 (870)
T CHL00122 302 IVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYN 381 (870)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhC
Confidence 0013578899998776666666664
Q ss_pred CCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHH-h-hccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecC
Q 007879 325 TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL-C-SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402 (586)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~ 402 (586)
-..+.+....+..+.. .....+. ....+..++... . ....+.||||-|.|....+.++.+|...|++..++++
T Consensus 382 l~vv~IPtnkp~~R~d---~~d~v~~--t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNA 456 (870)
T CHL00122 382 LEVVCIPTHRPMLRKD---LPDLIYK--DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNA 456 (870)
T ss_pred CCEEECCCCCCcccee---CCCeEEe--CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeC
Confidence 4433332222221111 1111111 122233333322 2 2445889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcC-CCcEEEecCcccccCCCC---C----------------------------------------
Q 007879 403 NLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDII---G---------------------------------------- 438 (586)
Q Consensus 403 ~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~---~---------------------------------------- 438 (586)
.....++...+-. ..| ...|.|||++|+||.||. +
T Consensus 457 k~~~~~~EA~IIA-~AG~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (870)
T CHL00122 457 KPENVRRESEIVA-QAGRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLNILNSLKNDL 535 (870)
T ss_pred CCccchhHHHHHH-hcCCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccccccchhhhhhcccch
Confidence 7422222222221 134 346999999999999982 1
Q ss_pred ---------------------------------------------------------ccEEEEeCCCCChhHHHHHhhhc
Q 007879 439 ---------------------------------------------------------VQTVINYACPRDLTSYVHRVGRT 461 (586)
Q Consensus 439 ---------------------------------------------------------v~~VI~~~~p~s~~~y~Qr~GR~ 461 (586)
--+||......|..-..|..||+
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GGL~VIgTErheSrRIDnQLrGRa 615 (870)
T CHL00122 536 KFLSLSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRA 615 (870)
T ss_pred hhhcccccccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCCCEEEecCcCchHHHHHHHhccc
Confidence 01566677777888889999999
Q ss_pred ccCCCcceEEEEeccCcHHH
Q 007879 462 ARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 462 gR~g~~g~~~~l~~~~d~~~ 481 (586)
||.|.||.+..|++-.|.-+
T Consensus 616 GRQGDPG~s~f~lSLED~l~ 635 (870)
T CHL00122 616 GRQGDPGSSRFFLSLEDNLL 635 (870)
T ss_pred cCCCCCCcceEEEEeccHHH
Confidence 99999999999999877544
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=1.6e-22 Score=221.64 Aligned_cols=328 Identities=20% Similarity=0.190 Sum_probs=215.9
Q ss_pred CcHHHHHHHHHHhcC---C-CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 007879 148 PTPIQAACIPLALTG---R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g---~-~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~ 223 (586)
.++.|..++..++.. . .+++.||||+|||.+.+++++..+... .....+++++.|++++..++++.+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 488999999888773 3 677999999999999888887776553 1245689999999999999999999876655
Q ss_pred CceEEEEeCCCChHHHHHH--------------hcCCCcEEEECcHHHHHHHHhcCCcC-c--cCceEEEEeCcccccCC
Q 007879 224 DIRCCLVVGGLSTKMQETA--------------LRSMPDIVVATPGRMIDHLRNSMSVD-L--DDLAVLILDEADRLLEL 286 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~Ili~Tp~~l~~~l~~~~~~~-l--~~~~~lViDEah~l~~~ 286 (586)
+......++.......... ......+.++||-...........+. + -..+++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 4433323443322111100 00112455566555554322211111 1 23468999999998766
Q ss_pred CcHHHHHHHHH-HCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEe-cchhhhH---HHHH
Q 007879 287 GFSAEIHELVR-LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQ---EAVL 361 (586)
Q Consensus 287 ~~~~~i~~i~~-~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~l 361 (586)
.....+..++. .......+|+||||+|+...+.+...+.....+....... .......+... ....... ....
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFC--PKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccc--ccccccccccccchhhhhhhhHhhhh
Confidence 32333333332 2334678999999999999998887776654443321100 00011111000 0000111 0111
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHh----cCCCcEEEecCcccccCCCC
Q 007879 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLDII 437 (586)
Q Consensus 362 ~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gldi~ 437 (586)
........+.+++|.|||+..|.+++..|+..+.++..+||.++..+|.+.+..+. .+...|+|||++++.|+||.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 11122344689999999999999999999988889999999999999998888654 46778999999999999984
Q ss_pred CccEEEEeCCCCChhHHHHHhhhcccCC--CcceEEEEeccCcHHHH
Q 007879 438 GVQTVINYACPRDLTSYVHRVGRTARAG--REGYAVTFVTDNDRSLL 482 (586)
Q Consensus 438 ~v~~VI~~~~p~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~d~~~~ 482 (586)
.+.+|-= +....+.+||+||++|-| ..|.++++.........
T Consensus 512 -fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 512 -FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred -cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 7777643 345889999999999988 56777777655443333
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.91 E-value=6.2e-22 Score=213.99 Aligned_cols=169 Identities=20% Similarity=0.288 Sum_probs=134.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCC-
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 447 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~- 447 (586)
.+.++||||++...+++|...|...|+.+..+||.+++.+|..++..|+.|.+.|||||+++++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ----CCChhHHHHHhhhcccCCCcceEEEEeccCc---------HHHHHHHHHHhcCccccccchhhhHHHHHHHHHHHH
Q 007879 448 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDND---------RSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQME 514 (586)
Q Consensus 448 ----p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (586)
|.+...|+||+||+||. ..|.|++|+...+ ...++.++..++.+ ..+++...++.+...++..+
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 601 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEE--HGITPKTIKKKIRDILDSVY 601 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHHHHHHhhh
Confidence 78999999999999995 6899999998644 34444455444443 35677777788877775443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007879 515 DQVAAILQEEREERILRKAEMEATKAEN 542 (586)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (586)
.. +.+.++..+..++.++.++.++.+
T Consensus 602 ~~--~~~~~~~~~~~~~~l~~~M~~aa~ 627 (652)
T PRK05298 602 KK--DKLSKKELEKLIKELEKQMKEAAK 627 (652)
T ss_pred hh--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 223444555555555555544433
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.5e-22 Score=210.92 Aligned_cols=321 Identities=22% Similarity=0.277 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHhcC----CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 146 SKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g----~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
..+.+-|+.++..+... ...++.|.||||||.+| +.++...+..++ .+|||+|-..|..|+.+.++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~Gk-----qvLvLVPEI~Ltpq~~~rf~~r-- 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQGK-----QVLVLVPEIALTPQLLARFKAR-- 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHcCC-----EEEEEeccccchHHHHHHHHHH--
Confidence 35788999999998765 67899999999999997 666666666554 5999999999999999988874
Q ss_pred cCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-----CCcHHHH
Q 007879 222 FTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-----LGFSAEI 292 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-----~~~~~~i 292 (586)
.+.++.+++++.+..++...+ .+...|||+| ++....++.++.+|||||-|.-.. ..+...-
T Consensus 269 -Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 269 -FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred -hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 358899999999877764433 3568999999 444456789999999999997542 2234444
Q ss_pred HHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhH----HHHHHHHhh-c
Q 007879 293 HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ----EAVLLSLCS-K 367 (586)
Q Consensus 293 ~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~-~ 367 (586)
..+++.-..+.++|+-|||++-+....+. -+....+...............++..+....... ...+..+-. .
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSLES~~~~~--~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l 417 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSLESYANAE--SGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL 417 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCHHHHHhhh--cCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH
Confidence 44455555678899999997644443332 2211222222111111111122222221111110 111111111 1
Q ss_pred cCCceEEEEecc----------------------------------------------------------------HHHH
Q 007879 368 TFTSKVIIFSGT----------------------------------------------------------------KQAA 383 (586)
Q Consensus 368 ~~~~~~lIF~~s----------------------------------------------------------------~~~~ 383 (586)
..+.++|+|.|. .+..
T Consensus 418 ~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 418 ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 123455555433 3344
Q ss_pred HHHHHHHhhcCCceEEecCCCCHH--HHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCC------------
Q 007879 384 HRLKILFGLAALKAAELHGNLTQA--QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------ 449 (586)
Q Consensus 384 ~~l~~~l~~~~~~~~~l~~~~~~~--~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~------------ 449 (586)
+.|..+|. +.++..++++++.. .-...+..|.+|+.+|||.|++++.|.|+|+++.|...+...
T Consensus 498 eeL~~~FP--~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er 575 (730)
T COG1198 498 EELKRLFP--GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASER 575 (730)
T ss_pred HHHHHHCC--CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHH
Confidence 44444443 56777888876653 356789999999999999999999999999999977554332
Q ss_pred ChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 450 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 450 s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
....+.|-.|||||.+.+|.+++.....+...++.+..
T Consensus 576 ~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 576 TFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 34567899999999999999999988888777776654
No 123
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=6.8e-21 Score=201.75 Aligned_cols=277 Identities=19% Similarity=0.193 Sum_probs=187.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|. .|+++|..+.-.+..|+ |+.+.||.|||+++.+|++...+.+. .|.||+++..||.+-++++..+..+
T Consensus 82 lG~-r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~Gk------gVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGK------GVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCC-CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCC------CeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 355 48888988877777676 99999999999999999987766554 3999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcC-----CcCccCceEEEEeCccccc-CC--------C
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-EL--------G 287 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~l~~~~~lViDEah~l~-~~--------~ 287 (586)
.|++|+++.++.+...... ...+||+++|+..| +++|+.+. ......+.++||||+|.++ +. |
T Consensus 153 LGLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg 230 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISG 230 (939)
T ss_pred hCCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccC
Confidence 9999999988877665544 34689999999888 44444322 1235778899999999865 10 0
Q ss_pred -------cHHHHHHHHHHC-------------------------------------------------------------
Q 007879 288 -------FSAEIHELVRLC------------------------------------------------------------- 299 (586)
Q Consensus 288 -------~~~~i~~i~~~~------------------------------------------------------------- 299 (586)
.......+...+
T Consensus 231 ~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf 310 (939)
T PRK12902 231 QVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELF 310 (939)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHH
Confidence 000000000000
Q ss_pred -------------------------------------------------------------CCCCcEEEEeecCchhHHH
Q 007879 300 -------------------------------------------------------------PKRRQTMLFSATLTEDVDE 318 (586)
Q Consensus 300 -------------------------------------------------------------~~~~q~i~~SAT~~~~~~~ 318 (586)
....++.+||+|......+
T Consensus 311 ~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~E 390 (939)
T PRK12902 311 IKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVE 390 (939)
T ss_pred hcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHH
Confidence 0013567888888777777
Q ss_pred HHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCc
Q 007879 319 LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALK 396 (586)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~ 396 (586)
+...+--..+.+.......+...-. ..+. ....+..++...+. ...+.||||-|.|....+.++.+|...|+.
T Consensus 391 f~~iY~l~Vv~IPTnkP~~R~d~~d---~vy~--t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 391 FEKTYKLEVTVIPTNRPRRRQDWPD---QVYK--TEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHHhCCcEEEcCCCCCeeeecCCC---eEEc--CHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 7666654444433322222111111 1111 22333444433332 345889999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCC-CcEEEecCcccccCCC
Q 007879 397 AAELHGNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDI 436 (586)
Q Consensus 397 ~~~l~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldi 436 (586)
..++++.-...++...+-. ..|+ ..|.|||++|+||.||
T Consensus 466 h~vLNAk~~~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVA-QAGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred hheeeCCCcchHhHHHHHH-hcCCCCcEEEeccCCCCCcCE
Confidence 9999986222222222211 2453 4699999999999998
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=3.1e-21 Score=206.79 Aligned_cols=119 Identities=24% Similarity=0.345 Sum_probs=110.4
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC-
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA- 446 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~- 446 (586)
..+.++||||+++..+++|..+|...|+.+..+||.+++.+|..++..|+.|++.|||||+.+++|+|+|++++||+++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----CCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 447 ----CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 447 ----~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
.|.+..+|+||+|||||. ..|.+++|+...+....+.|.+
T Consensus 520 difG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 520 DKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred ccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 799999999999999997 5899999999887666666554
No 125
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.90 E-value=2.1e-22 Score=213.98 Aligned_cols=322 Identities=17% Similarity=0.202 Sum_probs=211.3
Q ss_pred CcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCC---CCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 148 PTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 148 ~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~---~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
++.||++.+.|+.- +-+.|+|..+|.|||++.+..+.....++. ....+...||+||. .|+.-|...+.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 57899999998742 347899999999999985443333333331 12334458999995 68788888888877
Q ss_pred hcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCC
Q 007879 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (586)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~ 300 (586)
.+ +++...+|........+.-.++.+|+|+++..+.+-+.. +.-..|-|+|+||.|-|.|. ...+.+..+.+.
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 65 566666776555444444455679999999999764433 11246889999999999874 444555555554
Q ss_pred CCCcEEEEeecCc-hhHHHHHHHh---cC--------------CCeEE--------------------------------
Q 007879 301 KRRQTMLFSATLT-EDVDELIKLS---LT--------------KPLRL-------------------------------- 330 (586)
Q Consensus 301 ~~~q~i~~SAT~~-~~~~~~~~~~---~~--------------~~~~~-------------------------------- 330 (586)
.+. .+++|+|+- +++.+++.++ |. +|+..
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333 477888873 3333321111 00 00000
Q ss_pred ------------------------------------------eeCCCCCCCCC---------------ceEEEEEEec--
Q 007879 331 ------------------------------------------SADPSAKRPST---------------LTEEVVRIRR-- 351 (586)
Q Consensus 331 ------------------------------------------~~~~~~~~~~~---------------~~~~~~~~~~-- 351 (586)
..+........ ..|.......
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00000000000 0000000000
Q ss_pred -------------------chhhhHHHHHHHHhh----------------ccCCceEEEEeccHHHHHHHHHHHhhc---
Q 007879 352 -------------------MREVNQEAVLLSLCS----------------KTFTSKVIIFSGTKQAAHRLKILFGLA--- 393 (586)
Q Consensus 352 -------------------~~~~~~~~~l~~~~~----------------~~~~~~~lIF~~s~~~~~~l~~~l~~~--- 393 (586)
.....+..+|..++. ...++++||||+-+..++.+.+-|-..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 011112223333321 013579999999999999998876543
Q ss_pred CCceEEecCCCCHHHHHHHHHHHhcC-CCcE-EEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcce--
Q 007879 394 ALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY-- 469 (586)
Q Consensus 394 ~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~-- 469 (586)
.+.+..++|..++.+|.++..+|+++ .++| |++|.+++.|+|+.|+++||+++-.|||...+|++.||+|.|++-.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 34566999999999999999999998 6777 5889999999999999999999999999999999999999998765
Q ss_pred EEEEeccCc
Q 007879 470 AVTFVTDND 478 (586)
Q Consensus 470 ~~~l~~~~d 478 (586)
+|.|++.+.
T Consensus 1447 VyRlItrGT 1455 (1549)
T KOG0392|consen 1447 VYRLITRGT 1455 (1549)
T ss_pred eeeehhccc
Confidence 455566554
No 126
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=7e-22 Score=191.82 Aligned_cols=329 Identities=19% Similarity=0.152 Sum_probs=214.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
.+.|...+.++...+.++...-...+..+.+.+..+.+++-+++.|.||||||.+....++...+... ..|....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-----~~v~CTQ 98 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-----TGVACTQ 98 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----cceeecC
Confidence 67788889999999988876655566677777888888889999999999999864444444443332 2489999
Q ss_pred CcHHHHHHHHHHHHHHhh-cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 204 PTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
|.|..|.+++.....-.. ..|-.+++...-.+-. ..++=.-++|.+.|++...+. ..+..+++||+||||.
T Consensus 99 prrvaamsva~RVadEMDv~lG~EVGysIrfEdC~------~~~T~Lky~tDgmLlrEams~--p~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 99 PRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCT------SPNTLLKYCTDGMLLREAMSD--PLLGRYGVIILDEAHE 170 (699)
T ss_pred chHHHHHHHHHHHHHHhccccchhccccccccccC------ChhHHHHHhcchHHHHHHhhC--cccccccEEEechhhh
Confidence 999999988765543221 1222222222111100 011112378999988876663 4578999999999996
Q ss_pred cc-CCC-cHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHH
Q 007879 283 LL-ELG-FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360 (586)
Q Consensus 283 l~-~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (586)
-. ..+ ..-.++.++... +..++|+||||+.. ..++.++.++..+.+.. ..|..+ .+.....+.........
T Consensus 171 RtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg--~~PvEi-~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG--THPVEI-FYTPEPERDYLEAAIRT 243 (699)
T ss_pred hhHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCC--CCceEE-EecCCCChhHHHHHHHH
Confidence 32 222 222334444444 58899999999753 23345555554444422 222211 00111111222233344
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhc---------CCceEEecCCCCHHHHHHHHHHHhc---C--CCcEEEe
Q 007879 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------ALKAAELHGNLTQAQRLEALELFRK---Q--HVDFLIA 426 (586)
Q Consensus 361 l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~---------~~~~~~l~~~~~~~~r~~~~~~f~~---g--~~~vLva 426 (586)
++.++.....+.+|||..+.++++..++.+... .+++..+| +.++.++++.... | ..+|+|+
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvs 319 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVS 319 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEE
Confidence 555666666899999999999888777766522 35788888 4444444443332 2 4679999
Q ss_pred cCcccccCCCCCccEEEEeC------------------CCCChhHHHHHhhhcccCCCcceEEEEeccC
Q 007879 427 TDVAARGLDIIGVQTVINYA------------------CPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (586)
Q Consensus 427 T~~~~~Gldi~~v~~VI~~~------------------~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 477 (586)
|++++..+.|++|.+||.-+ .|.|..+..||.||+||. ++|+|+.+|++.
T Consensus 320 tniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 320 TNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999999633 355788889999999996 599999999864
No 127
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.89 E-value=3.6e-22 Score=204.42 Aligned_cols=322 Identities=18% Similarity=0.186 Sum_probs=215.7
Q ss_pred CcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 007879 148 PTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (586)
Q Consensus 148 ~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~ 223 (586)
+-+||.-.++|+.- +-+.|+...+|.|||.+ .+..+..+...+. .+.-|||||...|-+ |.+.+.+|| +
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~---~gpHLVVvPsSTleN-WlrEf~kwC--P 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN---PGPHLVVVPSSTLEN-WLREFAKWC--P 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC---CCCcEEEecchhHHH-HHHHHHHhC--C
Confidence 78999999999753 45789999999999986 3555555554433 234799999998844 445555544 4
Q ss_pred CceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 224 DIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
.+++..++|........+.. ....+|+++|+.....--.....+.-.++.++|+||+|.+.+.+ ...+..++..-
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~ 551 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN 551 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc
Confidence 68888888886544433222 12579999998765422222222334578999999999998875 55555555543
Q ss_pred CCCCcEEEEeecCc-hhHHHHHHHhc---C-----------------------------------------C--------
Q 007879 300 PKRRQTMLFSATLT-EDVDELIKLSL---T-----------------------------------------K-------- 326 (586)
Q Consensus 300 ~~~~q~i~~SAT~~-~~~~~~~~~~~---~-----------------------------------------~-------- 326 (586)
..+.|++|+|+- +++.+++.+.. . .
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445688888873 22222211100 0 0
Q ss_pred -------Ce---EEe-------------------------eCCCCCCCC--------------CceEEEEE---------
Q 007879 327 -------PL---RLS-------------------------ADPSAKRPS--------------TLTEEVVR--------- 348 (586)
Q Consensus 327 -------~~---~~~-------------------------~~~~~~~~~--------------~~~~~~~~--------- 348 (586)
|. .+. ......... .+...++.
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 00 000 000000000 00000000
Q ss_pred ----------------------------------Ee----------cchhhhHHHHHHHHhh--ccCCceEEEEeccHHH
Q 007879 349 ----------------------------------IR----------RMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQA 382 (586)
Q Consensus 349 ----------------------------------~~----------~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~ 382 (586)
++ ......+...|..++. ...+.+||||......
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 00 0011122333333443 2346899999999999
Q ss_pred HHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC-C-cEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhh
Q 007879 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-V-DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460 (586)
Q Consensus 383 ~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~-~-~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR 460 (586)
.+.|..+|...++++..++|.+....|+.++..|...+ + -+|++|.+++-|||+..+++||.||...||-...|+-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999999764 2 359999999999999999999999999999999999999
Q ss_pred cccCCCc--ceEEEEeccCcH
Q 007879 461 TARAGRE--GYAVTFVTDNDR 479 (586)
Q Consensus 461 ~gR~g~~--g~~~~l~~~~d~ 479 (586)
++|.|+. -.++.|++.+..
T Consensus 870 cHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHhhCCcceeEEEEEEecCcH
Confidence 9999964 567778888653
No 128
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.7e-20 Score=184.81 Aligned_cols=174 Identities=23% Similarity=0.294 Sum_probs=129.6
Q ss_pred CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh-ccCCceEEEEeccH
Q 007879 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-KTFTSKVIIFSGTK 380 (586)
Q Consensus 302 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~lIF~~s~ 380 (586)
..|+|++|||+.+.-.+... +..+.- .-+|..+....+.+++.... -...+..+.. ...+.++||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQ-----iIRPTGLlDP~ievRp~~~Q-vdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQ-----IIRPTGLLDPEIEVRPTKGQ-VDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEE-----eecCCCCCCCceeeecCCCc-HHHHHHHHHHHHhcCCeEEEEeehH
Confidence 46999999998754322211 111111 12344444444555443221 1222222222 34468999999999
Q ss_pred HHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCC-----CChhHHH
Q 007879 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP-----RDLTSYV 455 (586)
Q Consensus 381 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p-----~s~~~y~ 455 (586)
+.++.|..+|...|+++..+|+....-+|..++...+.|.++|||.-+.+-.|||+|.|.+|..+|.. .|..+.+
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988754 5889999
Q ss_pred HHhhhcccCCCcceEEEEeccCcHHHHHHH
Q 007879 456 HRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (586)
Q Consensus 456 Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i 485 (586)
|-+|||+|. -.|.++.+...-...+-+.|
T Consensus 537 QtIGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 999999995 47999888766554444444
No 129
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=2.2e-20 Score=209.22 Aligned_cols=327 Identities=19% Similarity=0.236 Sum_probs=201.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~----~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~ 207 (586)
+++.+.+.+...||. +++.|.+.+. .+..++++++.||||+|||++|++|++..+. . +.+++|.+||++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~-----~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T-----EKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-----CCeEEEEeCcHH
Confidence 445677778788887 8999998665 5566889999999999999999999987764 2 226999999999
Q ss_pred HHHHHHH-HHHHHhhcCC--ceEEEEeCCCChHH---------------H------------------------------
Q 007879 208 LAVQVHS-MIEKIAQFTD--IRCCLVVGGLSTKM---------------Q------------------------------ 239 (586)
Q Consensus 208 La~Q~~~-~~~~l~~~~~--~~~~~~~~~~~~~~---------------~------------------------------ 239 (586)
|..|+.. .+..+.+..+ +++.++.|+.+.-. .
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 5665555444 67777766532100 0
Q ss_pred --HHHh------------------------cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-------
Q 007879 240 --ETAL------------------------RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL------- 286 (586)
Q Consensus 240 --~~~~------------------------~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~------- 286 (586)
+..+ ...++|||+...-|+..+..... -+....++||||||++.+.
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHhcc
Confidence 0000 11238999999988887654322 2456689999999996420
Q ss_pred Cc-----HHH-------------------------------------------------------------HHHH---HH
Q 007879 287 GF-----SAE-------------------------------------------------------------IHEL---VR 297 (586)
Q Consensus 287 ~~-----~~~-------------------------------------------------------------i~~i---~~ 297 (586)
.+ ... ...+ ..
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 00 000 0000 00
Q ss_pred -----------HC-------------------------------------CCCCcEEEEeecCchh--HHHHHHH-hcCC
Q 007879 298 -----------LC-------------------------------------PKRRQTMLFSATLTED--VDELIKL-SLTK 326 (586)
Q Consensus 298 -----------~~-------------------------------------~~~~q~i~~SAT~~~~--~~~~~~~-~~~~ 326 (586)
.+ +....+|++|||++.. ...+... .+..
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 00 0124678999999742 2322222 2222
Q ss_pred CeEEeeCCCCCCCCC-ceEEEEEEecc-------hhhhH----HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh--
Q 007879 327 PLRLSADPSAKRPST-LTEEVVRIRRM-------REVNQ----EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-- 392 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~----~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~-- 392 (586)
....... ..+.. -.+..+.++.. ..... ...+..++. ..++++|||++|+...+.++..|..
T Consensus 623 ~~~~~~~---~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 623 VHFNTIE---PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred cccceec---CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 1111111 11111 11111111110 00111 112222333 3457999999999999999999875
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCcc--EEEEeCCCCC------------------
Q 007879 393 --AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ--TVINYACPRD------------------ 450 (586)
Q Consensus 393 --~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~--~VI~~~~p~s------------------ 450 (586)
.++.+ +..+.. ..|..+++.|++|+..||++|+.+.+|+|+++.. .||...+|..
T Consensus 699 ~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 23333 333333 5788999999999999999999999999999966 5777777742
Q ss_pred ------------hhHHHHHhhhcccCCCc-ceEEEE
Q 007879 451 ------------LTSYVHRVGRTARAGRE-GYAVTF 473 (586)
Q Consensus 451 ------------~~~y~Qr~GR~gR~g~~-g~~~~l 473 (586)
...+.|.+||.-|.... |.++++
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 12345999999997644 543333
No 130
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.88 E-value=2.5e-20 Score=196.51 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=101.2
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEecCcccccCCCCCccEEEE
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVIN 444 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~Gldi~~v~~VI~ 444 (586)
+..++++|||+...++.+.|..+|+..|+.+..|+|.+..++|...+++|+... +.++++|...+.|||+.++++||+
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF 1352 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF 1352 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE
Confidence 445899999999999999999999999999999999999999999999999874 346899999999999999999999
Q ss_pred eCCCCChhHHHHHhhhcccCCCc--ceEEEEeccC
Q 007879 445 YACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDN 477 (586)
Q Consensus 445 ~~~p~s~~~y~Qr~GR~gR~g~~--g~~~~l~~~~ 477 (586)
||..||+.-..|...|++|+|+. -+.|.|++..
T Consensus 1353 YDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1353 YDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999999999965 4567777764
No 131
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=5.3e-20 Score=196.86 Aligned_cols=318 Identities=18% Similarity=0.209 Sum_probs=213.1
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.|+++|.-+--.+..|+ |+.+.||-|||+++.+|++...+.+.+ |-|++..-.||..-++++..+..+.|++
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~Gkg------VHvVTVNDYLA~RDaewmgply~fLGLs 240 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGNG------VHVVTVNDYLAKRDSEWMGPLYEFHGLS 240 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCCC------cEEEEechhhhhccHHHHHHHHHHhCCc
Confidence 46777877766666666 999999999999999999888776544 8888999999999999999999999999
Q ss_pred EEEEeC-CCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCc-----CccCceEEEEeCccccc-C----------C--
Q 007879 227 CCLVVG-GLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-E----------L-- 286 (586)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~-----~l~~~~~lViDEah~l~-~----------~-- 286 (586)
++++.. +.+...+.. ...+||+++|..-| +++|+.+... -...+.+.||||+|.++ + .
T Consensus 241 vg~i~~~~~~~~~rr~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILIDEARTPLIISGp~~ 318 (1112)
T PRK12901 241 VDCIDKHQPNSEARRK--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVP 318 (1112)
T ss_pred eeecCCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhhccccCcEEEeCCCC
Confidence 998866 444444333 44589999998776 6666554222 24668899999999864 1 0
Q ss_pred -C----c---HHHHHHH--------------------------------------------HHHCCC-------------
Q 007879 287 -G----F---SAEIHEL--------------------------------------------VRLCPK------------- 301 (586)
Q Consensus 287 -~----~---~~~i~~i--------------------------------------------~~~~~~------------- 301 (586)
+ | ...+..+ +..+..
T Consensus 319 ~~~~~~y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e~~ 398 (1112)
T PRK12901 319 KGDDQEFEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTENF 398 (1112)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhhhh
Confidence 0 0 0101111 000000
Q ss_pred --------------------------------------------------------------------------------
Q 007879 302 -------------------------------------------------------------------------------- 301 (586)
Q Consensus 302 -------------------------------------------------------------------------------- 301 (586)
T Consensus 399 ~~~~n~~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~~~ 478 (1112)
T PRK12901 399 YMQDNNREMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELFQD 478 (1112)
T ss_pred hhhhhhhcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 007879 302 -------------------------------------------------------------------------------- 301 (586)
Q Consensus 302 -------------------------------------------------------------------------------- 301 (586)
T Consensus 479 ~~~~~~~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~Qn 558 (1112)
T PRK12901 479 YSVKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQN 558 (1112)
T ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHH
Confidence
Q ss_pred ----CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEE
Q 007879 302 ----RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVII 375 (586)
Q Consensus 302 ----~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lI 375 (586)
..++-+||+|......++...+--..+.+....+..+... .. ..+. ....+..++..-+. ...+.||||
T Consensus 559 yFR~Y~kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~-~D--~vy~--t~~eK~~Aii~ei~~~~~~GrPVLV 633 (1112)
T PRK12901 559 YFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDK-ED--LVYK--TKREKYNAVIEEITELSEAGRPVLV 633 (1112)
T ss_pred HHhhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecC-CC--eEec--CHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 0122334444433333333333222222222111111110 00 1111 12233344433332 346889999
Q ss_pred EeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC--------CccEEEEeCC
Q 007879 376 FSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII--------GVQTVINYAC 447 (586)
Q Consensus 376 F~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~--------~v~~VI~~~~ 447 (586)
-+.|....+.|+.+|...|++..+|++.....+-.-+-+.-+ .-.|.|||++|+||.||. |--+||....
T Consensus 634 GT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTer 711 (1112)
T PRK12901 634 GTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTER 711 (1112)
T ss_pred EeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccC
Confidence 999999999999999999999999988765444433333333 336899999999999996 4458999999
Q ss_pred CCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 448 p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
+.|..-..|..||+||.|.+|.+..|++-.|.-+
T Consensus 712 heSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 712 HESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 9999999999999999999999999999877443
No 132
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=1e-21 Score=205.79 Aligned_cols=333 Identities=17% Similarity=0.199 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHhc----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 145 YSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
-..+.+||...+.|+.. +-+.|+..+||.|||.+ .+.++..++...+- .+ ..||+||+..|..+ ...+..|+
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~-~G-P~LvivPlstL~NW-~~Ef~kWa 467 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM-QG-PFLIIVPLSTLVNW-SSEFPKWA 467 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHccc-CC-CeEEeccccccCCc-hhhccccc
Confidence 34789999999999865 34789999999999987 57777777665442 23 38999999999774 44555432
Q ss_pred hcCCceEEEEeCCCChH--HHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHH
Q 007879 221 QFTDIRCCLVVGGLSTK--MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (586)
Q Consensus 221 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~ 298 (586)
+.+......|..... -........++|+++|++.+.. ....+.--+|.++||||.|+|.+ +...+...++.
T Consensus 468 --PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t 540 (1157)
T KOG0386|consen 468 --PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN--AICKLTDTLNT 540 (1157)
T ss_pred --cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc--hhhHHHHHhhc
Confidence 345554444432211 1122234668999999988764 22123334788999999999987 34444444443
Q ss_pred CCCCCcEEEEeecCchh----HHHHHHHhcCC--------------CeE-------------------------------
Q 007879 299 CPKRRQTMLFSATLTED----VDELIKLSLTK--------------PLR------------------------------- 329 (586)
Q Consensus 299 ~~~~~q~i~~SAT~~~~----~~~~~~~~~~~--------------~~~------------------------------- 329 (586)
.......+++|+|+-.+ +..+++..+.+ |..
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 33334456666666311 11111110000 000
Q ss_pred -------------------------------------EeeCC--CCCCCCC-----------ceEEEEE--E--------
Q 007879 330 -------------------------------------LSADP--SAKRPST-----------LTEEVVR--I-------- 349 (586)
Q Consensus 330 -------------------------------------~~~~~--~~~~~~~-----------~~~~~~~--~-------- 349 (586)
+.++. ....... ..|.++. +
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~ 700 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY 700 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccccc
Confidence 00000 0000000 0011110 0
Q ss_pred ---ecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCC---
Q 007879 350 ---RRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV--- 421 (586)
Q Consensus 350 ---~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~--- 421 (586)
.-.....+...+..++. +..+++||.||........+..+|...++.+..++|.+...+|...+..|+....
T Consensus 701 ~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf 780 (1157)
T KOG0386|consen 701 DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYF 780 (1157)
T ss_pred ChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCcee
Confidence 00122333444444443 3457999999999999999999999999999999999999999999999997643
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 422 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
.+|++|.+.+.|+|+..+++||.||..|+|..+.|+..||+|.|+...|.++....-..+.+.|...
T Consensus 781 ~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 781 IFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred eeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999998888887766655555555443
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.87 E-value=5.9e-20 Score=193.53 Aligned_cols=333 Identities=17% Similarity=0.174 Sum_probs=211.1
Q ss_pred CCcHHHHHHHHHHhc---C-------CCeEEEcCCCchhHHHhhhhhHHHHhcCCCC--CCCeEEEEEcCcHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALT---G-------RDICGSAITGSGKTAAFALPTLERLLYRPKR--IPAIRVLILTPTRELAVQVHS 214 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~---g-------~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~vlil~Ptr~La~Q~~~ 214 (586)
.++|+|++++..+.. | ..+|++..+|+|||+. +++.+..++..... ..-.+.|||+|. .|+.-|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 589999999988753 2 3567889999999998 57777776665332 111468999995 67777888
Q ss_pred HHHHHhhcCCceEEEEeCCCCh--HHHHHHh-----cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC
Q 007879 215 MIEKIAQFTDIRCCLVVGGLST--KMQETAL-----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287 (586)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~ 287 (586)
.+.+|.....+....+++..+. ......+ ....-|++.+++.+.++.+. +....++++|+||+|++-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh
Confidence 8888765445666667776553 1111111 12246888999999877665 446788999999999988753
Q ss_pred cHHHHHHHHHHCCCCCcEEEEeecCc-hhHHHHHHHh-cCCCeEE-----------------------------------
Q 007879 288 FSAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRL----------------------------------- 330 (586)
Q Consensus 288 ~~~~i~~i~~~~~~~~q~i~~SAT~~-~~~~~~~~~~-~~~~~~~----------------------------------- 330 (586)
..+.+.+..+. .++.|++|+|+- +++.++.... +.+|-.+
T Consensus 393 --s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 393 --SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 33333333333 344688899973 2222221110 0000000
Q ss_pred -----------eeC-CCCCCCCCceEEEEEEec-----------------------------------------------
Q 007879 331 -----------SAD-PSAKRPSTLTEEVVRIRR----------------------------------------------- 351 (586)
Q Consensus 331 -----------~~~-~~~~~~~~~~~~~~~~~~----------------------------------------------- 351 (586)
... ......+.....++.+..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 000 000001111111111110
Q ss_pred ------------------------chhhhHHHHHHHHh---hccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCC
Q 007879 352 ------------------------MREVNQEAVLLSLC---SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404 (586)
Q Consensus 352 ------------------------~~~~~~~~~l~~~~---~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~ 404 (586)
.....+...|..++ ......++.+..|-....+.+..+++-.|+.++.+||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 00111122223332 122223444555667777777888888899999999999
Q ss_pred CHHHHHHHHHHHhcCCC--c-EEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEE--ecc---
Q 007879 405 TQAQRLEALELFRKQHV--D-FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF--VTD--- 476 (586)
Q Consensus 405 ~~~~r~~~~~~f~~g~~--~-vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l--~~~--- 476 (586)
+..+|..+++.|++... . +|++|-+++.||++-|+..||.||++|||+.-.|+++|+.|.|++-.|+++ ++.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCc
Confidence 99999999999998543 3 578888999999999999999999999999999999999999987666554 544
Q ss_pred CcHHHHHHHHH
Q 007879 477 NDRSLLKAIAK 487 (586)
Q Consensus 477 ~d~~~~~~i~~ 487 (586)
++..+-++..+
T Consensus 710 EEk~~qrq~~K 720 (776)
T KOG0390|consen 710 EEKIYQRQTHK 720 (776)
T ss_pred hHHHHHHHHHh
Confidence 33444444443
No 134
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=7.6e-20 Score=198.62 Aligned_cols=301 Identities=18% Similarity=0.144 Sum_probs=178.0
Q ss_pred CcHHHHHHHHHHhc----------CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 148 PTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 148 ~~~~Q~~~i~~il~----------g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
++++|..++..+.. .+..+++++||||||++. +.+...++.. ...++||||+|+.+|..|+.+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~-~~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTM-LFAARKALEL---LKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHH-HHHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHHH
Confidence 78899998877642 257899999999999874 4444444422 235689999999999999999998
Q ss_pred HHhhcCCceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhc-CCcCccCc-eEEEEeCcccccCCCcHHHHHH
Q 007879 218 KIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNS-MSVDLDDL-AVLILDEADRLLELGFSAEIHE 294 (586)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~-~~~~l~~~-~~lViDEah~l~~~~~~~~i~~ 294 (586)
.+.... ..+..+.......+. ....|+|+|.+.|...+... ..+..... -+||+||||+.....+.. .
T Consensus 315 ~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~---~ 385 (667)
T TIGR00348 315 SLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAK---N 385 (667)
T ss_pred hhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHH---H
Confidence 864210 011112222223333 24689999999997644321 11111111 289999999975433332 2
Q ss_pred HHHHCCCCCcEEEEeecCchhH----HHHHHHhcCCCeEEeeCCCCCCCCCc----eEEEEE----Eecc----------
Q 007879 295 LVRLCPKRRQTMLFSATLTEDV----DELIKLSLTKPLRLSADPSAKRPSTL----TEEVVR----IRRM---------- 352 (586)
Q Consensus 295 i~~~~~~~~q~i~~SAT~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~---------- 352 (586)
+.+.+| +...++|||||-... ..........++.. ..........+ ...... +...
T Consensus 386 l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 386 LKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred HHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 334454 467899999985321 11111001111111 00000000000 000000 0000
Q ss_pred -------hhhhH-------------------H-----HHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhc-----C
Q 007879 353 -------REVNQ-------------------E-----AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-----A 394 (586)
Q Consensus 353 -------~~~~~-------------------~-----~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~-----~ 394 (586)
....+ . .++..+.. ...+++++|||.++..|.++.+.|... +
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 00000 0 00001111 122589999999999999999887554 2
Q ss_pred CceEEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEecCcccccCCCCCccEEEEeCCCCChh
Q 007879 395 LKAAELHGNLTQA---------------------QRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (586)
Q Consensus 395 ~~~~~l~~~~~~~---------------------~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~ 452 (586)
.....+++..... ....++++|++ +..+|||+++++..|+|.|.+++++..-+..+ .
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-H 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-c
Confidence 4455666543322 12468889976 68899999999999999999999997765554 5
Q ss_pred HHHHHhhhcccC
Q 007879 453 SYVHRVGRTARA 464 (586)
Q Consensus 453 ~y~Qr~GR~gR~ 464 (586)
.++|++||+.|.
T Consensus 623 ~LlQai~R~nR~ 634 (667)
T TIGR00348 623 GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHHhccc
Confidence 689999999994
No 135
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.86 E-value=5.2e-20 Score=191.36 Aligned_cols=296 Identities=20% Similarity=0.242 Sum_probs=190.0
Q ss_pred CCcHHHHHHHHHHhc----C-CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 147 KPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~----g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.++++|..||..+.. | +.+|++|.||+|||.++ +.++..|++... ..+||+|+-+++|+.|.+..+..+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~---~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW---VKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch---hheeeEEechHHHHHHHHHHHHHhCC
Confidence 588999999876653 4 45899999999999885 777777766543 23799999999999999988887643
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc----CCcCccCceEEEEeCcccccCCCcHHHHHHHHH
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~----~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~ 297 (586)
+ +-.+..+.+... ...+.|.++|++.+...+... ..+....+++|||||||+-....+. .++.
T Consensus 241 ~-~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~d 307 (875)
T COG4096 241 F-GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SILD 307 (875)
T ss_pred C-ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHHH
Confidence 3 222222222211 124799999999998877654 2345677999999999986533333 4444
Q ss_pred HCCCCCcEEEEeecCchhHHHHHHHhc-CCCeEE--------------------ee--CCCCCCCCCceE------EEE-
Q 007879 298 LCPKRRQTMLFSATLTEDVDELIKLSL-TKPLRL--------------------SA--DPSAKRPSTLTE------EVV- 347 (586)
Q Consensus 298 ~~~~~~q~i~~SAT~~~~~~~~~~~~~-~~~~~~--------------------~~--~~~~~~~~~~~~------~~~- 347 (586)
++.... +++|||+...+...--.++ ..|+.. .. ......+..... ..+
T Consensus 308 YFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~ 385 (875)
T COG4096 308 YFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAID 385 (875)
T ss_pred HHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccC
Confidence 443322 4559998764433322233 222221 11 111111111100 000
Q ss_pred ---------EEec-----chhhhHHHHHHHHhhc--cC--CceEEEEeccHHHHHHHHHHHhhc-----CCceEEecCCC
Q 007879 348 ---------RIRR-----MREVNQEAVLLSLCSK--TF--TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNL 404 (586)
Q Consensus 348 ---------~~~~-----~~~~~~~~~l~~~~~~--~~--~~~~lIF~~s~~~~~~l~~~l~~~-----~~~~~~l~~~~ 404 (586)
.+.. .....-...+...+.. .. .+++||||.+..+|+++...|... +--+..+.|..
T Consensus 386 ~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~ 465 (875)
T COG4096 386 EDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA 465 (875)
T ss_pred cccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc
Confidence 0000 0000011222333333 11 468999999999999999998754 23456666654
Q ss_pred CHHHHHHHHHHHhc--CCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhccc
Q 007879 405 TQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463 (586)
Q Consensus 405 ~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR 463 (586)
. +-...+..|.. .-..|.|+.+++..|+|+|.|..+|++-.-.|..-|.|++||+-|
T Consensus 466 ~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 466 E--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred h--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 3 33445666655 345799999999999999999999999999999999999999989
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=4e-20 Score=192.96 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=117.6
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc-
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI- 225 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~- 225 (586)
.|..||.+.+-.+-.+..+++.|||.+|||.+ ...+++.++.... ...||+++||.+|+.|+...+........+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD---~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD---SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC---CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 47889999999999999999999999999975 5666777666543 236999999999999998877765433222
Q ss_pred eEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc--CCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCC
Q 007879 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (586)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~--~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~ 303 (586)
+...+.|..+..-+. -.-+|.|+|+-|+.|-..|... .......++++|+||+|.+.+..-...+.+++...| +
T Consensus 587 rg~sl~g~ltqEYsi--np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSI--NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--C 662 (1330)
T ss_pred cchhhHhhhhHHhcC--CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--C
Confidence 222233332222111 1225899999999998877653 123478899999999999998765666666766654 5
Q ss_pred cEEEEeecCchh
Q 007879 304 QTMLFSATLTED 315 (586)
Q Consensus 304 q~i~~SAT~~~~ 315 (586)
.++++|||+.+.
T Consensus 663 P~L~LSATigN~ 674 (1330)
T KOG0949|consen 663 PFLVLSATIGNP 674 (1330)
T ss_pred CeeEEecccCCH
Confidence 689999998653
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=1.6e-19 Score=168.50 Aligned_cols=186 Identities=40% Similarity=0.600 Sum_probs=150.1
Q ss_pred cCCCCCcHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 143 LGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.++..|+++|.+++..++.+ +.++++++||+|||.+++.+++..+.... ..++||++|++.++.|+...+..+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----CCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46778999999999999998 99999999999999988888887765442 23699999999999999999988765
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCC-cEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCC
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMP-DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~ 300 (586)
..........++.........+..+. +|+++|++.+...+.... .....++++|+||||.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 54433444455544444455555555 999999999999887753 4567889999999999997668888888888888
Q ss_pred CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeC
Q 007879 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (586)
Q Consensus 301 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 333 (586)
...+++++|||+++........++.....+...
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 889999999999988888888888766665543
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.84 E-value=1.1e-18 Score=170.08 Aligned_cols=327 Identities=15% Similarity=0.167 Sum_probs=214.0
Q ss_pred CCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 007879 145 YSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~ 223 (586)
+..+.|+|.+.+...++ |..+++...+|.|||+++ |.+...+ ...- ..||+||...+ .-|.+.+..|....
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yy-raEw-----plliVcPAsvr-ftWa~al~r~lps~ 267 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYY-RAEW-----PLLIVCPASVR-FTWAKALNRFLPSI 267 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHH-hhcC-----cEEEEecHHHh-HHHHHHHHHhcccc
Confidence 34578999999988776 678999999999999975 4433332 2211 38999997544 55777777664332
Q ss_pred CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCC
Q 007879 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~ 303 (586)
..+.++.++..... .+-....|.|.+++.|..+-.. +.-..+.+||+||+|.+.+.. ...+..++..+....
T Consensus 268 -~pi~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 268 -HPIFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred -cceEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 22444444433211 1223357999999887654322 334568999999999987653 333555555555666
Q ss_pred cEEEEeecCc-------------------hhHHHHHHHhcCCC-eEEeeCC--------------------------CCC
Q 007879 304 QTMLFSATLT-------------------EDVDELIKLSLTKP-LRLSADP--------------------------SAK 337 (586)
Q Consensus 304 q~i~~SAT~~-------------------~~~~~~~~~~~~~~-~~~~~~~--------------------------~~~ 337 (586)
.+|++|+|+. ++..++...+|... +.+..+. -..
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999983 22333334444321 1111110 001
Q ss_pred CCCCceEEEEEEecchhh-----------------------------------hHHHHHHHH------hhccCCceEEEE
Q 007879 338 RPSTLTEEVVRIRRMREV-----------------------------------NQEAVLLSL------CSKTFTSKVIIF 376 (586)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~l~~~------~~~~~~~~~lIF 376 (586)
.|+. .+.++.+...... .+...+... +....+.+.+||
T Consensus 420 LPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 420 LPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred CCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 1112 2222222110000 000111111 123346789999
Q ss_pred eccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC-CCcE-EEecCcccccCCCCCccEEEEeCCCCChhHH
Q 007879 377 SGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPRDLTSY 454 (586)
Q Consensus 377 ~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y 454 (586)
|.-....+.+...+...++....|+|.++...|..+.+.|+.. ++.| +++-.+++.||++...+.||+..++|||.-.
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 9999999999999999999999999999999999999999875 5555 6778889999999999999999999999999
Q ss_pred HHHhhhcccCCCcceEEEE--eccC--cHHHHHHHHHH
Q 007879 455 VHRVGRTARAGREGYAVTF--VTDN--DRSLLKAIAKR 488 (586)
Q Consensus 455 ~Qr~GR~gR~g~~g~~~~l--~~~~--d~~~~~~i~~~ 488 (586)
+|.-.|++|.|++..+.+. +.+. |...+..+.++
T Consensus 579 lQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~K 616 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQK 616 (689)
T ss_pred EechhhhhhccccceeeEEEEEecCchHHHHHHHHHHH
Confidence 9999999999987665444 4443 33444444443
No 139
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.3e-19 Score=176.71 Aligned_cols=312 Identities=18% Similarity=0.231 Sum_probs=207.1
Q ss_pred CCCcHHHHHHHHHHhcC---CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 146 SKPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g---~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
..++|||..++..++.+ ++.|+..|.|+|||++- +-+...+. .++||||..-..+.||...+..|+..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVG-vTAa~tik--------K~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG-VTAACTIK--------KSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceee-eeeeeeec--------ccEEEEecCccCHHHHHHHHHhhccc
Confidence 35789999999999874 68999999999999874 44444432 25999999999999999999998877
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc-------CCcCccCceEEEEeCcccccCCCcHHHHHHH
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHEL 295 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~-------~~~~l~~~~~lViDEah~l~~~~~~~~i~~i 295 (586)
.+-.++.++.+... ....++.|+|+|+.++..--.+. ..+.-..|.++|+||+|.+...-|+..+.-+
T Consensus 372 ~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 372 QDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred CccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 67777777765432 24567899999997764321110 0122467999999999999887788777777
Q ss_pred HHHCCCCCcEEEEeecCchhHHHHHHH-hcCCCeEEeeC----------------C-CCCCCCCc----------eEEEE
Q 007879 296 VRLCPKRRQTMLFSATLTEDVDELIKL-SLTKPLRLSAD----------------P-SAKRPSTL----------TEEVV 347 (586)
Q Consensus 296 ~~~~~~~~q~i~~SAT~~~~~~~~~~~-~~~~~~~~~~~----------------~-~~~~~~~~----------~~~~~ 347 (586)
..++. +++|||+-.+-.....+ ++-.|-.+..+ . -......+ .....
T Consensus 447 ~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 447 QAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 66664 89999985432211111 01011000000 0 00000000 00001
Q ss_pred EEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEe
Q 007879 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIA 426 (586)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~vLva 426 (586)
.+-....-.....|..+..+ .+.++|||..+.-.....+-.|+. -.++|.+++.+|.++++.|+-. .++.++-
T Consensus 522 yvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 11000011111223333333 588999999988877777666543 4678999999999999999865 6788888
Q ss_pred cCcccccCCCCCccEEEEeCCCC-ChhHHHHHhhhcccCCC---c---ceEEEEeccCcHHHH
Q 007879 427 TDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGR---E---GYAVTFVTDNDRSLL 482 (586)
Q Consensus 427 T~~~~~Gldi~~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~---~---g~~~~l~~~~d~~~~ 482 (586)
+-++-..+|+|.++++|+..... |...=.||.||.-|+-+ . ...|.+++.+.....
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 99999999999999999876654 66777899999988542 2 345566666554443
No 140
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.83 E-value=2.1e-19 Score=181.52 Aligned_cols=112 Identities=16% Similarity=0.265 Sum_probs=100.6
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCc-EEEecCcccccCCCCCccEEEEe
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD-FLIATDVAARGLDIIGVQTVINY 445 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~-vLvaT~~~~~Gldi~~v~~VI~~ 445 (586)
+..++++|+|++..+....+..+|...++....++|.....+|..++..|....+- +|++|.+++.|||+..+++||+|
T Consensus 1041 kaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFY 1120 (1185)
T KOG0388|consen 1041 KAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFY 1120 (1185)
T ss_pred hcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEe
Confidence 34578999999999999999999999999999999999999999999999986544 58999999999999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCcc--eEEEEeccCc
Q 007879 446 ACPRDLTSYVHRVGRTARAGREG--YAVTFVTDND 478 (586)
Q Consensus 446 ~~p~s~~~y~Qr~GR~gR~g~~g--~~~~l~~~~d 478 (586)
|..|||....|...||+|.|+.- .+|.+++...
T Consensus 1121 dSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1121 DSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999999754 4666666543
No 141
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=4e-17 Score=180.37 Aligned_cols=326 Identities=18% Similarity=0.233 Sum_probs=197.4
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH-HHHHH
Q 007879 143 LGYSKPTPIQAACIPLA----LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIE 217 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~i----l~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~-~~~~~ 217 (586)
.||. +++-|.+.+..+ ..++.+++.|+||+|||++|++|++... .+.+++|++||++|+.|+ .+.+.
T Consensus 242 ~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 242 LGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 4564 899998855443 3467888999999999999999988753 134799999999999999 57788
Q ss_pred HHhhcCCceEEEEeCCCChHHH-----------------------------------------------HHHh-------
Q 007879 218 KIAQFTDIRCCLVVGGLSTKMQ-----------------------------------------------ETAL------- 243 (586)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~------- 243 (586)
.+.+..++++..+.|+.+.-.. +..+
T Consensus 314 ~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~ 393 (820)
T PRK07246 314 AIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLS 393 (820)
T ss_pred HHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCC
Confidence 8888788888777776421100 0000
Q ss_pred -----------------cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-----c----H---HH---
Q 007879 244 -----------------RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----F----S---AE--- 291 (586)
Q Consensus 244 -----------------~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-----~----~---~~--- 291 (586)
...++|+|+...-|+..+.... .+..++++||||||++.+.. . . ..
T Consensus 394 ~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~ 471 (820)
T PRK07246 394 QSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQK 471 (820)
T ss_pred CCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHH
Confidence 0113899999888877665432 25679999999999974210 0 0 00
Q ss_pred ----------------------------------------HHH-------H--------HHH------------------
Q 007879 292 ----------------------------------------IHE-------L--------VRL------------------ 298 (586)
Q Consensus 292 ----------------------------------------i~~-------i--------~~~------------------ 298 (586)
+.. + ...
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~ 551 (820)
T PRK07246 472 ALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEK 551 (820)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 000 0 000
Q ss_pred ------------------CCCCCcEEEEeecCc--hhHHHHHHH-hcCCCeEEeeCCCCCCCCCceEEEEEE----ecch
Q 007879 299 ------------------CPKRRQTMLFSATLT--EDVDELIKL-SLTKPLRLSADPSAKRPSTLTEEVVRI----RRMR 353 (586)
Q Consensus 299 ------------------~~~~~q~i~~SAT~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 353 (586)
++....+|++|||++ +... +... .+......... . ... .+..+.+ +...
T Consensus 552 ~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~--~--~~~-~~~~~~i~~~~p~~~ 625 (820)
T PRK07246 552 RVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE--K--DKK-QDQLVVVDQDMPLVT 625 (820)
T ss_pred ceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC--C--ChH-HccEEEeCCCCCCCC
Confidence 001236789999996 3332 3222 22111111110 0 000 1111111 1100
Q ss_pred ---hhhH----HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEe
Q 007879 354 ---EVNQ----EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (586)
Q Consensus 354 ---~~~~----~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLva 426 (586)
.... ...+..+. ..++++||+++|+...+.++..|....+.+ ...|... .+..++++|+++...||++
T Consensus 626 ~~~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 626 ETSDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred CCChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEe
Confidence 0111 11222333 347899999999999999999987655444 3333222 3566899999988899999
Q ss_pred cCcccccCCCCC--ccEEEEeCCCCC------------------------------hhHHHHHhhhcccCCC-cceEEEE
Q 007879 427 TDVAARGLDIIG--VQTVINYACPRD------------------------------LTSYVHRVGRTARAGR-EGYAVTF 473 (586)
Q Consensus 427 T~~~~~Gldi~~--v~~VI~~~~p~s------------------------------~~~y~Qr~GR~gR~g~-~g~~~~l 473 (586)
|..+.+|+|+|+ ...||...+|.. ...+.|.+||.-|... .|.++++
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999999974 455777666631 2234699999999664 5655444
Q ss_pred ecc-CcHHHHHHHHHHh
Q 007879 474 VTD-NDRSLLKAIAKRA 489 (586)
Q Consensus 474 ~~~-~d~~~~~~i~~~~ 489 (586)
-.. ....+-+.+.+.+
T Consensus 781 D~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 781 DRRILTKSYGKQILASL 797 (820)
T ss_pred CCcccccHHHHHHHHhC
Confidence 333 2233444454443
No 142
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.1e-17 Score=144.76 Aligned_cols=117 Identities=39% Similarity=0.603 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcc--CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccC
Q 007879 357 QEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (586)
Q Consensus 357 ~~~~l~~~~~~~--~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 434 (586)
+...+..++... .++++||||++...++.+...|...+..+..+||.++..+|..++..|++|...||++|.++++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 444444444433 478999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEE
Q 007879 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (586)
Q Consensus 435 di~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l 473 (586)
|+|++++||++++|++...|.|++||++|.|+.|.++++
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999998888764
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=6e-18 Score=131.72 Aligned_cols=78 Identities=33% Similarity=0.599 Sum_probs=75.4
Q ss_pred HHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCC
Q 007879 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (586)
Q Consensus 388 ~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 465 (586)
++|...++.+..+||.+++.+|..+++.|++|...|||||+++++|+|+|.+++||++++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999976
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=2.1e-17 Score=163.67 Aligned_cols=275 Identities=23% Similarity=0.258 Sum_probs=180.3
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (586)
-++-+|||.||||. .+++++...+. .++--|.|.||..+++.+.. .|+.|.+++|.........
T Consensus 193 Ii~H~GPTNSGKTy----~ALqrl~~aks------GvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTY----RALQRLKSAKS------GVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred EEEEeCCCCCchhH----HHHHHHhhhcc------ceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCCC--
Confidence 35579999999995 44666655443 58999999999999998886 4788888888643322111
Q ss_pred cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHH-HHHHHHHHCCCCCcEEEEeecCchhHHHHHHH
Q 007879 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA-EIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 244 ~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~-~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
...+..+-||.++.- + -..+++.||||.+.|.+....- +-+.++........+.+ - +.+..+.+.
T Consensus 257 ~~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvldlV~~ 322 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVLDLVRK 322 (700)
T ss_pred CCcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHHHHHHH
Confidence 122456667754321 1 2468899999999998654332 22334444333332222 1 334444444
Q ss_pred hcCC---CeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCc-eE
Q 007879 323 SLTK---PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AA 398 (586)
Q Consensus 323 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~-~~ 398 (586)
.+.. .+.+ +.+-++..... ...+..-++...++-+ |.|-|++....+...+...+.. ++
T Consensus 323 i~k~TGd~vev-------------~~YeRl~pL~v---~~~~~~sl~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 323 ILKMTGDDVEV-------------REYERLSPLVV---EETALGSLSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHhhcCCeeEE-------------EeecccCccee---hhhhhhhhccCCCCCe-EEEeehhhHHHHHHHHHHhcCcceE
Confidence 3321 1111 11122211111 1122333333334444 3456777888888888887765 99
Q ss_pred EecCCCCHHHHHHHHHHHhc--CCCcEEEecCcccccCCCCCccEEEEeCCC---------CChhHHHHHhhhcccCCC-
Q 007879 399 ELHGNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYACP---------RDLTSYVHRVGRTARAGR- 466 (586)
Q Consensus 399 ~l~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p---------~s~~~y~Qr~GR~gR~g~- 466 (586)
+++|++++..|.+--..|++ +.++||||||++++|+|+ +++.||+|++- .+..+..|.+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999998 899999999999999998 89999998865 357788999999999873
Q ss_pred --cceEEEEeccCcHHHHHHHHH
Q 007879 467 --EGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 467 --~g~~~~l~~~~d~~~~~~i~~ 487 (586)
.|.+.+|.. .|...++++.+
T Consensus 465 ~~~G~vTtl~~-eDL~~L~~~l~ 486 (700)
T KOG0953|consen 465 YPQGEVTTLHS-EDLKLLKRILK 486 (700)
T ss_pred CcCceEEEeeH-hhHHHHHHHHh
Confidence 477777654 45566666554
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=1.4e-15 Score=171.46 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=84.2
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCC--ceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCC--ccEEE
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--VQTVI 443 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~~~~--~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~--v~~VI 443 (586)
..++++|||++|+...+.++..|..... .+..+..+++...|..+++.|+.+...||++|..+.+|+|+|+ +.+||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3467999999999999999999875422 1223333444456788999999998899999999999999998 47898
Q ss_pred EeCCCCC-h-----------------------------hHHHHHhhhcccCCCc-ceEEEEecc-CcHHHHHHHHHH
Q 007879 444 NYACPRD-L-----------------------------TSYVHRVGRTARAGRE-GYAVTFVTD-NDRSLLKAIAKR 488 (586)
Q Consensus 444 ~~~~p~s-~-----------------------------~~y~Qr~GR~gR~g~~-g~~~~l~~~-~d~~~~~~i~~~ 488 (586)
...+|.. | ..+.|.+||.-|.... |.++++-.. ....+-+.+.+.
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLES 906 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHh
Confidence 8877751 1 1235999999997643 544433222 133343444443
No 146
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=2.4e-16 Score=156.08 Aligned_cols=347 Identities=13% Similarity=0.055 Sum_probs=229.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 007879 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (586)
Q Consensus 137 ~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~ 216 (586)
...+..+.-.....+|.+++..+.+|+++++.-.|.+||.++|.+.....+..-+. ...+++.|+.+++....+.+
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~----s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA----TNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc----cceecchhHHHHhhccCCce
Confidence 33445566677889999999999999999999999999999998888776655433 25789999999976432211
Q ss_pred HHHhh---cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc-C--CcCccCceEEEEeCcccccCCC---
Q 007879 217 EKIAQ---FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-M--SVDLDDLAVLILDEADRLLELG--- 287 (586)
Q Consensus 217 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~-~--~~~l~~~~~lViDEah~l~~~~--- 287 (586)
.-... ...--++-.+.+.+........+.+..++++.|.........+ . ...+-...++++||+|-.+...
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~ 431 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKAL 431 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhH
Confidence 10000 0011123334455555556666778899999998876544321 1 1224456689999999765421
Q ss_pred cHHHHHHHHHHCC-----CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchh---h---h
Q 007879 288 FSAEIHELVRLCP-----KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE---V---N 356 (586)
Q Consensus 288 ~~~~i~~i~~~~~-----~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~ 356 (586)
....+..+.+.+. .+.|++--|||+...+...-..+.-+-+.+.. ....|..-.+.++.-+...+ . .
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 2233444444443 46788888999876665444433333333222 22233344444444332111 1 1
Q ss_pred H----HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh----cCC----ceEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 007879 357 Q----EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL----AAL----KAAELHGNLTQAQRLEALELFRKQHVDFL 424 (586)
Q Consensus 357 ~----~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~----~~~----~~~~l~~~~~~~~r~~~~~~f~~g~~~vL 424 (586)
+ ..++..++. .+-++|-||++++.|+.+....+. .+- .+..+.|+...++|.++....-.|+..-+
T Consensus 510 ~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi 587 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI 587 (1034)
T ss_pred HHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE
Confidence 1 112222332 356899999999999987654432 221 34566789999999999999999999999
Q ss_pred EecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEe--ccCcHHHHHHHHHHhcC
Q 007879 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFV--TDNDRSLLKAIAKRAGS 491 (586)
Q Consensus 425 vaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~--~~~d~~~~~~i~~~~~~ 491 (586)
|+|++++.||||.+.+.|++.+.|.|...+.|..|||||..++..++.+. .+-|..++..-....+.
T Consensus 588 IaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~ 656 (1034)
T KOG4150|consen 588 IATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGS 656 (1034)
T ss_pred EecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCC
Confidence 99999999999999999999999999999999999999988886655544 45566666554444433
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=1.6e-17 Score=171.58 Aligned_cols=314 Identities=20% Similarity=0.209 Sum_probs=180.1
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcC----CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 007879 139 ACEALGYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (586)
Q Consensus 139 ~l~~~~~~~~~~~Q~~~i~~il~g----~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~ 214 (586)
.+.-....+|+|+|+.|+..++.| ...=+.+.+|+|||.+. |-+.+++.. .++|+|+|..+|..|..+
T Consensus 153 nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~-------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 153 NLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA-------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred ccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh-------hheEeecchHHHHHHHHH
Confidence 333345668999999999999875 23456778999999884 777777644 369999999999988755
Q ss_pred HHHHHhhcCCceEEEEeCCCChHH-----------------------HHHH--hcCCCcEEEECcHHHHHHHHhcCCcCc
Q 007879 215 MIEKIAQFTDIRCCLVVGGLSTKM-----------------------QETA--LRSMPDIVVATPGRMIDHLRNSMSVDL 269 (586)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~Ili~Tp~~l~~~l~~~~~~~l 269 (586)
....- ....++...++++..... .+.. -..+--||++|++.+...-... ...+
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ-e~G~ 302 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ-EAGL 302 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH-HcCC
Confidence 44331 112444444444322110 0011 1123469999999987654432 3457
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCC-----CCCcEEEEeecCchh---HHHHHHH-------------------
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCP-----KRRQTMLFSATLTED---VDELIKL------------------- 322 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~-----~~~q~i~~SAT~~~~---~~~~~~~------------------- 322 (586)
..+++||+||||+...-.+...-..-...++ +..+.+.||||+.-- ....+..
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~ 382 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFH 382 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhh
Confidence 8899999999998643111100000000000 123458899997411 1111100
Q ss_pred -----------hcCCC--eEEeeCCCCCCCCCceEEEEEEecchhhhHHHHH----HHHhh--------------ccCCc
Q 007879 323 -----------SLTKP--LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL----LSLCS--------------KTFTS 371 (586)
Q Consensus 323 -----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~--------------~~~~~ 371 (586)
.+.+. +.+.++.. .....+..........-.......+ .-+.+ ..+..
T Consensus 383 rl~FgeAv~rdlLTDYKVmvlaVd~~-~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~ 461 (1518)
T COG4889 383 RLGFGEAVERDLLTDYKVMVLAVDKE-VIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQ 461 (1518)
T ss_pred cccHHHHHHhhhhccceEEEEEechh-hhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHH
Confidence 00000 00001000 0000000000000000000000000 00111 11123
Q ss_pred eEEEEeccHHHHHHHHHHHhh---------------cCCceEEecCCCCHHHHHHHHHH---HhcCCCcEEEecCccccc
Q 007879 372 KVIIFSGTKQAAHRLKILFGL---------------AALKAAELHGNLTQAQRLEALEL---FRKQHVDFLIATDVAARG 433 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~~---------------~~~~~~~l~~~~~~~~r~~~~~~---f~~g~~~vLvaT~~~~~G 433 (586)
+.|-||.+.++...++..|.. ..+++..++|.|...+|...+.. |....++||--..++++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 578899988887777665531 23455566789999998555543 345678899889999999
Q ss_pred CCCCCccEEEEeCCCCChhHHHHHhhhccc
Q 007879 434 LDIIGVQTVINYACPRDLTSYVHRVGRTAR 463 (586)
Q Consensus 434 ldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR 463 (586)
+|+|..+.||+|++..+..+.+|.+||+.|
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMR 571 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMR 571 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=7.5e-15 Score=155.22 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=60.8
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhc----CCCcEEEecCcccccCCC-------
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK----QHVDFLIATDVAARGLDI------- 436 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~Gldi------- 436 (586)
..++++||.+.|+..++.++..|...---...+.|.. ..+..+++.|+. |...||++|..+..|+|+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 3467999999999999999999865321223344433 245668888887 478999999999999999
Q ss_pred -CC--ccEEEEeCCCC
Q 007879 437 -IG--VQTVINYACPR 449 (586)
Q Consensus 437 -~~--v~~VI~~~~p~ 449 (586)
|| +.+||+..+|.
T Consensus 546 ~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 546 DKDNLLTDLIITCAPF 561 (636)
T ss_pred CCCCcccEEEEEeCCC
Confidence 34 88899888774
No 149
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.72 E-value=3.8e-15 Score=145.52 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=97.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC-CCcE-EEecCcccccCCCCCccEEEEeC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYA 446 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gldi~~v~~VI~~~ 446 (586)
..-+.|||.+.....+.+.-.|+..|++|+-+.|+|++..|..++..|++. .+.| |++-.+++..+|+..+.+|+++|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 345789999999999999999999999999999999999999999999986 4555 77788889999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCC--cceEEEEeccCc
Q 007879 447 CPRDLTSYVHRVGRTARAGR--EGYAVTFVTDND 478 (586)
Q Consensus 447 ~p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~d 478 (586)
+=|||.--.|...|.+|.|+ +-.++.|+-...
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999999999999995 566777766543
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=4.1e-16 Score=136.72 Aligned_cols=144 Identities=45% Similarity=0.570 Sum_probs=110.4
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
+++++.++||+|||.+++..+....... ...+++|++|++.++.|+.+.+..+... +..+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~----~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL----KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc----cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHH
Confidence 4689999999999998766665554431 2347999999999999999988887655 6778888887766665555
Q ss_pred hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 243 ~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
.....+|+++|++.+...+.... .....++++|+||+|.+....................+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 67789999999999988776542 3456789999999999987654444333444456778899999996
No 151
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.71 E-value=1.5e-15 Score=161.20 Aligned_cols=316 Identities=19% Similarity=0.169 Sum_probs=211.0
Q ss_pred CcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceE
Q 007879 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~ 227 (586)
++.+|.-..-.+.. .-++.+.||-|||+++.+|+.-..+.+++ |.+++..-.||..-.+++..+..+.|+.+
T Consensus 81 ~~dVQliG~i~lh~--g~iaEM~TGEGKTL~atlp~ylnaL~gkg------VhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQLLGGIVLHL--GDIAEMRTGEGKTLVATLPAYLNALAGKG------VHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHHHhhhhhhcC--CceeeeecCCchHHHHHHHHHHHhcCCCC------cEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 55566555544444 45999999999999999999877665443 89999999999999999999999999999
Q ss_pred EEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCC-----cCccCceEEEEeCccccc----------CC-----
Q 007879 228 CLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL----------EL----- 286 (586)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~-----~~l~~~~~lViDEah~l~----------~~----- 286 (586)
++...+.+...+...+. +||.++|...| +++++.+.. .....+.+.|+||+|.++ .+
T Consensus 153 G~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 153 GVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 99999998777666554 79999998877 555554321 124568899999999864 11
Q ss_pred -CcHHHHHHHHHHCCCC---------------------------------------------------------------
Q 007879 287 -GFSAEIHELVRLCPKR--------------------------------------------------------------- 302 (586)
Q Consensus 287 -~~~~~i~~i~~~~~~~--------------------------------------------------------------- 302 (586)
.....+..+...+...
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 1122222232211100
Q ss_pred ------------------------------------------------------CcEEEEeecCchhHHHHHHHhcCCCe
Q 007879 303 ------------------------------------------------------RQTMLFSATLTEDVDELIKLSLTKPL 328 (586)
Q Consensus 303 ------------------------------------------------------~q~i~~SAT~~~~~~~~~~~~~~~~~ 328 (586)
..+.+||+|...+..++...+....+
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv 390 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVV 390 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCcee
Confidence 12334444444444444444433333
Q ss_pred EEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHH-h-hccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCH
Q 007879 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSL-C-SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406 (586)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~ 406 (586)
.+..+....+.+.-. ..+. ....+..++... . ....++|+||.+.++...+.+.+.|...|++..+++.....
T Consensus 391 ~iPTnrp~~R~D~~D---~vy~--t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 391 VIPTNRPIIRLDEPD---LVYK--TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred eccCCCcccCCCCcc---cccc--chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 332222211111111 1111 122333333332 2 25568999999999999999999999999999999987764
Q ss_pred HHHHHHHHHHhcCCCcEEEecCcccccCCCCCc-----------cEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEec
Q 007879 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGV-----------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 407 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v-----------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
.+ .-+-.+.--...|-|||++|+||-||.-- -+||-.....|..-..|..||+||.|.+|.+..|++
T Consensus 466 ~E--A~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 466 RE--AEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HH--HHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 33 33333322234688999999999999322 257877778888888899999999999999998888
Q ss_pred cCcHH
Q 007879 476 DNDRS 480 (586)
Q Consensus 476 ~~d~~ 480 (586)
-.|.-
T Consensus 544 leD~L 548 (822)
T COG0653 544 LEDDL 548 (822)
T ss_pred hHHHH
Confidence 76643
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=2.6e-15 Score=152.66 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=93.5
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhc--CCCcE-EEecCcccccCCCCCccEEE
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDF-LIATDVAARGLDIIGVQTVI 443 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~--g~~~v-LvaT~~~~~Gldi~~v~~VI 443 (586)
.....+++|...-......++..+...|..+..+||.....+|..+++.|+. |..+| ||+-.+.+.|||+.+.+|+|
T Consensus 743 ~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHli 822 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLI 822 (901)
T ss_pred hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEE
Confidence 3346788888888888899999999999999999999999999999999985 43455 67777889999999999999
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceEEEE
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l 473 (586)
..|+.|||+-=.|+..|..|.|++..+++.
T Consensus 823 lvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 823 LVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 999999999999999999999987666543
No 153
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.65 E-value=4.7e-15 Score=154.61 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=92.5
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh----------------------cCCceEEecCCCCHHHHHHHHHHHhcCC----C
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQH----V 421 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~----------------------~~~~~~~l~~~~~~~~r~~~~~~f~~g~----~ 421 (586)
..+.++|||.++......+..+|.. .|..+..|+|..+...|......|++-. .
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 3478999999999999999988843 2467889999999999999999999752 2
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEE
Q 007879 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (586)
Q Consensus 422 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l 473 (586)
.+||+|.+++.|||+-.++.||+||..|||.-..|.+=|+.|+|+..-||++
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 3699999999999999999999999999999999999999999976555544
No 154
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=5.9e-16 Score=142.54 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHhc-------CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALT-------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~-------g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
+|+++|.+++..+.. ++.+++.+|||||||.+++..+ ..+.. +++|++|+..|+.|+.+.+..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~-~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALI-LELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHH-HHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhh-hcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 489999999999884 5889999999999999865433 33332 6999999999999999999665
Q ss_pred hhcCCceEE-----------EEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC----------CcCccCceEEEEe
Q 007879 220 AQFTDIRCC-----------LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM----------SVDLDDLAVLILD 278 (586)
Q Consensus 220 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~----------~~~l~~~~~lViD 278 (586)
......... ...................+++++|...|........ ......+.+||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 432111000 0111111112223334567999999999987765321 1234567899999
Q ss_pred CcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
|||++.... .+..++. .....+|+||||+.
T Consensus 154 EaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 999976432 1344444 45677899999985
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.64 E-value=4.2e-14 Score=151.71 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=97.3
Q ss_pred EcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----
Q 007879 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL---- 243 (586)
Q Consensus 168 ~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---- 243 (586)
.+.+|||||.+| +.++...+..++ .+|||+|...|+.|+.+.++... .+..+.+++++.+...+...+
T Consensus 166 ~~~~GSGKTevy-l~~i~~~l~~Gk-----~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRL-AAAAAATLRAGR-----GALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHH-HHHHHHHHHcCC-----eEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHHHh
Confidence 334699999997 666666665543 59999999999999999998743 236788999998877664432
Q ss_pred cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-----cHHHHHHHHHHCCCCCcEEEEeecCchhHHH
Q 007879 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (586)
Q Consensus 244 ~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-----~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 318 (586)
.+..+|+|+| ++.....+.++.+|||||-|.-.... |...-..+++....+..+|+.|||++-+...
T Consensus 238 ~G~~~IViGt--------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 238 RGQARVVVGT--------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred CCCCcEEEEc--------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 3457999999 45445678999999999999654211 2222223333334678899999998766554
Q ss_pred HH
Q 007879 319 LI 320 (586)
Q Consensus 319 ~~ 320 (586)
..
T Consensus 310 ~~ 311 (665)
T PRK14873 310 LV 311 (665)
T ss_pred HH
Confidence 43
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=1.1e-13 Score=152.45 Aligned_cols=125 Identities=17% Similarity=0.150 Sum_probs=85.8
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCc-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEecCcccccCCCCC-
Q 007879 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIG- 438 (586)
Q Consensus 362 ~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~-~~~l~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldi~~- 438 (586)
..++.. .++++|||++|+..+..+...+...... ....+|.. .+..++++|+.+.- .++|+|..+.+|+|+++
T Consensus 472 ~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~ 547 (654)
T COG1199 472 REILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGD 547 (654)
T ss_pred HHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCC
Confidence 333333 4569999999999999999999876553 34444443 34478888887655 89999999999999988
Q ss_pred -ccEEEEeCCCCC------------------------------hhHHHHHhhhcccCCC-cceEEEEeccCcH-HHHHHH
Q 007879 439 -VQTVINYACPRD------------------------------LTSYVHRVGRTARAGR-EGYAVTFVTDNDR-SLLKAI 485 (586)
Q Consensus 439 -v~~VI~~~~p~s------------------------------~~~y~Qr~GR~gR~g~-~g~~~~l~~~~d~-~~~~~i 485 (586)
++.||...+|.- .....|.+||+-|.-. .|.++++-..... .+-+.+
T Consensus 548 ~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l 627 (654)
T COG1199 548 ALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLL 627 (654)
T ss_pred CeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHH
Confidence 577888887752 3345799999999443 3555554333332 233444
Q ss_pred HHHhc
Q 007879 486 AKRAG 490 (586)
Q Consensus 486 ~~~~~ 490 (586)
.+.+.
T Consensus 628 ~~~l~ 632 (654)
T COG1199 628 LDSLP 632 (654)
T ss_pred HHhCC
Confidence 44443
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=2e-14 Score=154.39 Aligned_cols=314 Identities=17% Similarity=0.229 Sum_probs=212.7
Q ss_pred CcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH-HHHHHHHhhcCCc
Q 007879 148 PTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIEKIAQFTDI 225 (586)
Q Consensus 148 ~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~-~~~~~~l~~~~~~ 225 (586)
..|+|.++++.+.+ +.++++++|+|||||.++-++++. ..+..+++++.|.-+.+..+ ..+-.++....|.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 47889999888876 467889999999999988777664 23456899999999998844 4566677777899
Q ss_pred eEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC------cHHHHHHHHHHC
Q 007879 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG------FSAEIHELVRLC 299 (586)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~------~~~~i~~i~~~~ 299 (586)
++..+.|..+.... +....+|+|+||+++-.. + ....+++.|+||.|.+.... ... +..+-..+
T Consensus 1217 ~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~ 1286 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQL 1286 (1674)
T ss_pred eEEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHH
Confidence 98888887665433 344569999999997554 2 35678999999999987422 112 45555566
Q ss_pred CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHH-----HHHHHHhh-ccCCceE
Q 007879 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE-----AVLLSLCS-KTFTSKV 373 (586)
Q Consensus 300 ~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~-~~~~~~~ 373 (586)
-+..+++.+|..+.+. ..+ .++.....+++.+. .++..+.-.+..+......... ..+..+.. ...+.+.
T Consensus 1287 ~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~-~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~ 1362 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPS-VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPA 1362 (1674)
T ss_pred HhheeEEEeehhhccc-hhh--ccccccceeecCcc-cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCe
Confidence 6778899999887643 333 33333333333332 3444444444433322211111 11122222 3356789
Q ss_pred EEEeccHHHHHHHHHHHh----------------------hcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccc
Q 007879 374 IIFSGTKQAAHRLKILFG----------------------LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (586)
Q Consensus 374 lIF~~s~~~~~~l~~~l~----------------------~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 431 (586)
+||+++++.+..++.-|- ...++.++-|.+++..+..-+...|..|.+.|+|.... .
T Consensus 1363 ~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~ 1441 (1674)
T KOG0951|consen 1363 IVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-C 1441 (1674)
T ss_pred EEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-c
Confidence 999999999987754431 11234444499999999999999999999999888776 6
Q ss_pred ccCCCCCccEEE----EeC------CCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHH
Q 007879 432 RGLDIIGVQTVI----NYA------CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 432 ~Gldi~~v~~VI----~~~------~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~ 486 (586)
.|+-...--+|+ .|| .+.+.....|++|+|.| .|.|+++.......+++.+.
T Consensus 1442 ~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1442 YGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred ccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhc
Confidence 777654333333 132 34457888999999998 57899999888887777653
No 158
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=1.5e-12 Score=142.53 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc-CCceEEecCCCCHHHHHHHHHHHhc----CCCcEEEecCcccccCCCCC--ccE
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRK----QHVDFLIATDVAARGLDIIG--VQT 441 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~-~~~~~~l~~~~~~~~r~~~~~~f~~----g~~~vLvaT~~~~~Gldi~~--v~~ 441 (586)
.++++|||++|+...+.++..|... +.. ...+|. ..+..+++.|++ |...||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3556999999999999999988643 333 334453 246677877764 67789999999999999988 788
Q ss_pred EEEeCCCC
Q 007879 442 VINYACPR 449 (586)
Q Consensus 442 VI~~~~p~ 449 (586)
||...+|.
T Consensus 609 vII~kLPF 616 (697)
T PRK11747 609 VIITKIPF 616 (697)
T ss_pred EEEEcCCC
Confidence 99888774
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=4.4e-15 Score=116.84 Aligned_cols=81 Identities=47% Similarity=0.724 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccC
Q 007879 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464 (586)
Q Consensus 385 ~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 464 (586)
.+...|...++.+..+||.++..+|..++..|++|...|||+|+++++|+|++.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677878899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007879 465 G 465 (586)
Q Consensus 465 g 465 (586)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 160
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=6e-13 Score=146.80 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=60.5
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 143 LGYSKPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il----~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
+.|..++|.|.+.+..+. .++++++.+|||+|||++.+.|++......+. .+++++.+.|..-..|+.+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~---~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPE---VRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccc---cccEEEEcccchHHHHHHHHHHh
Confidence 467777999988876654 47899999999999999988888887654432 34799999999988999888888
Q ss_pred Hh
Q 007879 219 IA 220 (586)
Q Consensus 219 l~ 220 (586)
+.
T Consensus 83 ~~ 84 (705)
T TIGR00604 83 LM 84 (705)
T ss_pred hh
Confidence 53
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=1.2e-13 Score=158.45 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=94.4
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC--CCcEEEecCcccccCCCCCccEEEEeCCCC
Q 007879 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPR 449 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g--~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~ 449 (586)
++|||++.......+..+|...++.+..++|.++...|...+..|.++ ..-++++|.+++.|+|+.+.++||+||+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 899999999999999999999999999999999999999999999996 445678889999999999999999999999
Q ss_pred ChhHHHHHhhhcccCCCcceEEEE
Q 007879 450 DLTSYVHRVGRTARAGREGYAVTF 473 (586)
Q Consensus 450 s~~~y~Qr~GR~gR~g~~g~~~~l 473 (586)
|+....|+..|++|.|++..+.++
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999987665444
No 162
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.53 E-value=8.4e-13 Score=143.07 Aligned_cols=311 Identities=20% Similarity=0.172 Sum_probs=180.3
Q ss_pred CcHHHHHHHHHHhc--------CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 148 PTPIQAACIPLALT--------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 148 ~~~~Q~~~i~~il~--------g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
-+.+|-.|+..+.. |-=++-.|.||+|||++ =.-++..+.... .+.|..|-.-.|.|..|.-..+++-
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~---~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDK---QGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCC---CCceEEEEccccceeccchHHHHHh
Confidence 46799999988765 22245689999999986 455555554332 3568999999999999999888876
Q ss_pred hhcCCceEEEEeCCCChHHHHH-------------------------------------------HhcC--------CCc
Q 007879 220 AQFTDIRCCLVVGGLSTKMQET-------------------------------------------ALRS--------MPD 248 (586)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~--------~~~ 248 (586)
.....-...+++|+.....-.. .+.. ...
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 6655666677777633221110 0000 137
Q ss_pred EEEECcHHHHHHHHhc--CCcCcc----CceEEEEeCcccccCCCcHHHHHHHHHHC-CCCCcEEEEeecCchhHHHHHH
Q 007879 249 IVVATPGRMIDHLRNS--MSVDLD----DLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIK 321 (586)
Q Consensus 249 Ili~Tp~~l~~~l~~~--~~~~l~----~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~ 321 (586)
|+|||+..++...... ....+. .-+.|||||+|..-... ...+..++..+ .....+++||||+|+.+...+.
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 9999999998776321 111111 13579999999865432 22233333322 2357799999999988655432
Q ss_pred -----------HhcCC---CeEEee---CCCCCC----------------------------CCCceEEEEEEecchh--
Q 007879 322 -----------LSLTK---PLRLSA---DPSAKR----------------------------PSTLTEEVVRIRRMRE-- 354 (586)
Q Consensus 322 -----------~~~~~---~~~~~~---~~~~~~----------------------------~~~~~~~~~~~~~~~~-- 354 (586)
..... ++.+.. +..... +..-.-.++.+.....
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 12221 211110 000000 0000001111111100
Q ss_pred hhHHHH--------HHHHhh-----cc-CCce---EEEEeccHHHHHHHHHHHhhc------CCceEEecCCCCHHHHHH
Q 007879 355 VNQEAV--------LLSLCS-----KT-FTSK---VIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLE 411 (586)
Q Consensus 355 ~~~~~~--------l~~~~~-----~~-~~~~---~lIF~~s~~~~~~l~~~l~~~------~~~~~~l~~~~~~~~r~~ 411 (586)
...... ...+.. .. .+.+ .||-+.++..+..++..|-.. .+.++++|+..+...|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 000001 111111 01 1122 366667777776666665432 356889999988777766
Q ss_pred HHHHH----------------------hc----CCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCC
Q 007879 412 ALELF----------------------RK----QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (586)
Q Consensus 412 ~~~~f----------------------~~----g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 465 (586)
+.+.. .+ +...|+|+|++++.|+|+ +.+.+|- -|.+..+.+||+||+.|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 65443 12 356799999999999998 4565543 3567899999999999966
Q ss_pred C
Q 007879 466 R 466 (586)
Q Consensus 466 ~ 466 (586)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 4
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.50 E-value=3e-12 Score=135.47 Aligned_cols=287 Identities=17% Similarity=0.194 Sum_probs=175.1
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (586)
-.++.+|+|||||.+. +..+...+.. +..++|+|.-+++|+.+....++... ..++.. +...... .+
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~~~-l~gFv~---Y~d~~~~----~i 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKKAG-LSGFVN---YLDSDDY----II 117 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhhcC-CCccee---eeccccc----cc
Confidence 3569999999999874 5555554332 23379999999999999988887531 112221 1111100 01
Q ss_pred c-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHH-------HHHHHHHCCCCCcEEEEeecCchh
Q 007879 244 R-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE-------IHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 244 ~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~-------i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
. ...+-+++....|.+... ..+.++++|||||+-..++.-|... +..+...+.....+|++-||+...
T Consensus 118 ~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred cccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 1 134677777777765432 2367799999999998765423222 223445556677899999999999
Q ss_pred HHHHHHHhcCC-CeEEeeCCCCCCCCCceEEEEEEecc---------------------------------hhhhHHHHH
Q 007879 316 VDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRM---------------------------------REVNQEAVL 361 (586)
Q Consensus 316 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l 361 (586)
..+++...... ++.+..+. ...+.-........+.. ........+
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~-y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNT-YASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEee-eecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 99988876543 23222221 11110000000000000 000011111
Q ss_pred HHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCc-
Q 007879 362 LSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV- 439 (586)
Q Consensus 362 ~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v- 439 (586)
..+.. -..+.++-||++|...++.++++......++..++|.-+..+. +. -++.+|+++|.++..|+++...
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhh
Confidence 22222 2336788899999999999999999999999999887665522 22 3578999999999999999554
Q ss_pred -cEEEEeCCCC----ChhHHHHHhhhcccCCCcceEEEEec
Q 007879 440 -QTVINYACPR----DLTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 440 -~~VI~~~~p~----s~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
+-|+-|--|. +..+..|++||+=... ....++++.
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 4466563342 3456899999954433 455555553
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.38 E-value=3.8e-12 Score=106.76 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
|+-.++-.++|+|||.-.+--++...+.+. .++|||.|||.++..+.+.++. .++++. ..-...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-----~rvLvL~PTRvva~em~~aL~~----~~~~~~--t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR-----LRVLVLAPTRVVAEEMYEALKG----LPVRFH--TNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT-------EEEEESSHHHHHHHHHHTTT----SSEEEE--STTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc-----CeEEEecccHHHHHHHHHHHhc----CCcccC--ceeeec-----
Confidence 445678999999999865444455454443 3799999999999988777763 233322 211111
Q ss_pred HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC--cHHHHHHHHHHCCCCCcEEEEeecCchhH
Q 007879 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~--~~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 316 (586)
....+.-|-++|...+...+.+ ...+.++++||+||||..-.+. +.-.+..+-.. ....+|+||||+|...
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCCC
Confidence 1234567889999998887766 4557899999999999854322 22233333221 2357999999998544
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.37 E-value=3e-12 Score=127.61 Aligned_cols=156 Identities=21% Similarity=0.166 Sum_probs=95.6
Q ss_pred HHHHHHHHHh-------------cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 151 IQAACIPLAL-------------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 151 ~Q~~~i~~il-------------~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
+|..++.+++ ..+.+|++..+|+|||++. +.++..+...........+|||||. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~-i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITA-IALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHH-HHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhh-hhhhhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 5777777763 3467899999999999884 5555555544333222359999999 77789999999
Q ss_pred HHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHH-----HHHHhcCCcCccCceEEEEeCcccccCCCcHHHH
Q 007879 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI-----DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (586)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~-----~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i 292 (586)
.++....+++..+.|...............+|+|+|+..+. ..... +.-.++++||+||+|.+.+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--ccc
Confidence 98765466777666665122222223445799999999998 11111 112358999999999996543 223
Q ss_pred HHHHHHCCCCCcEEEEeecCch
Q 007879 293 HELVRLCPKRRQTMLFSATLTE 314 (586)
Q Consensus 293 ~~i~~~~~~~~q~i~~SAT~~~ 314 (586)
...+..+. ....+++|||+..
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccc-cceEEeecccccc
Confidence 33333344 6677999999754
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.30 E-value=1.7e-09 Score=121.64 Aligned_cols=287 Identities=18% Similarity=0.146 Sum_probs=161.1
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
+..+|+--||||||++ ++.+...+... ...++|+||+-++.|-.|..+.+..+........ ...+.......
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~ 345 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKEL 345 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHH
Confidence 4689999999999987 45555555554 3466899999999999999999998765432211 33445555555
Q ss_pred hcCC-CcEEEECcHHHHHHHHhcCCc-CccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHH-
Q 007879 243 LRSM-PDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL- 319 (586)
Q Consensus 243 ~~~~-~~Ili~Tp~~l~~~l~~~~~~-~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~- 319 (586)
+..+ ..|+|||-+.|-......... .-.+-=+||+||||+.-.. .....+...++ +...++||+||--.-...
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G---~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~t 421 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG---ELAKLLKKALK-KAIFIGFTGTPIFKEDKDT 421 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc---HHHHHHHHHhc-cceEEEeeCCccccccccc
Confidence 5544 489999999998777553111 1122237899999996432 22233333443 367899999985322111
Q ss_pred HHHhcCCCeEEeeCCCC-CCCCCc--eEEEE-EEecchhh-----------------------h---------------H
Q 007879 320 IKLSLTKPLRLSADPSA-KRPSTL--TEEVV-RIRRMREV-----------------------N---------------Q 357 (586)
Q Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~-~~~~~~~~-----------------------~---------------~ 357 (586)
....++..+........ .....+ ..... .+...... . .
T Consensus 422 t~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~ 501 (962)
T COG0610 422 TKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRL 501 (962)
T ss_pred hhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHH
Confidence 11122222221111110 000011 00000 00000000 0 0
Q ss_pred H----HHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcC---------------------CceEEe--cCCCCHHHH
Q 007879 358 E----AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------LKAAEL--HGNLTQAQR 409 (586)
Q Consensus 358 ~----~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~---------------------~~~~~l--~~~~~~~~r 409 (586)
. .....+.. ...+.++.+.+.++..+..+.+...... ...... |... ...+
T Consensus 502 ~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 580 (962)
T COG0610 502 IRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEK 580 (962)
T ss_pred HHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHH
Confidence 0 00011111 3345678888888875544443332110 000000 1111 2233
Q ss_pred HHHHHHH--hcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhccc
Q 007879 410 LEALELF--RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR 463 (586)
Q Consensus 410 ~~~~~~f--~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR 463 (586)
......| .....++||.++++-.|+|-|.++++. .|-|.-....+|.+.|+.|
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR 635 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNR 635 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhcc
Confidence 3344443 345789999999999999999777665 6777888899999999999
No 167
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.26 E-value=1.3e-10 Score=110.48 Aligned_cols=131 Identities=26% Similarity=0.351 Sum_probs=101.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|+ .|++.|..++-.+..|+ |+.+.||-|||++..+|++...+.+. .|-|++....||.+-++++..+..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~------~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK------GVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-------EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC------CcEEEeccHHHhhccHHHHHHHHHH
Confidence 455 59999999998887777 99999999999998888877766543 4999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcCCc-----CccCceEEEEeCccccc
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL 284 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~~~-----~l~~~~~lViDEah~l~ 284 (586)
.|++++.+.++.+...+...+. ++|+++|...| .++|++.... ....+.++||||||.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999988665554444 58999999988 5667653221 14678999999999876
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.24 E-value=3.9e-11 Score=125.55 Aligned_cols=314 Identities=18% Similarity=0.224 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCceEEE
Q 007879 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRCCL 229 (586)
Q Consensus 151 ~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l-~~~~~~~~~~ 229 (586)
+-..++..+..+.-+++.+.||+|||..+.-.+|+.++......-. -+.+-.|+|..+.-+.+.+.+- +...+-.|++
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~-na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASF-NAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccc-cceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 3345555566677788999999999999999999998877654322 3778889987777666554331 1112222221
Q ss_pred EeCCCChHHHHHHh-cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc-CCCcHHHHHHHHHHCCCCCcEEE
Q 007879 230 VVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTML 307 (586)
Q Consensus 230 ~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~q~i~ 307 (586)
-..- .... ...-.|+++|-+.+++.+.+. +..+.++|+||.|... +..|...+..=+.-..+...+++
T Consensus 461 ~vRf------~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 461 NVRF------DSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred cccc------cccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 1111 1111 112368999999999988774 5678899999999754 33344333333333344555666
Q ss_pred EeecCchhHHHH--------------------HHHhcCCCeEEeeCCCCCCCCC-ceEEE------------EEEe-c--
Q 007879 308 FSATLTEDVDEL--------------------IKLSLTKPLRLSADPSAKRPST-LTEEV------------VRIR-R-- 351 (586)
Q Consensus 308 ~SAT~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~-~-- 351 (586)
||||+..+.... ....+..+.............. ..+.. .... .
T Consensus 531 msatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 531 MSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred hhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 666665432211 1111111111000000000000 00000 0000 0
Q ss_pred ---------chh-hh----HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc-------CCceEEecCCCCHHHHH
Q 007879 352 ---------MRE-VN----QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRL 410 (586)
Q Consensus 352 ---------~~~-~~----~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~-------~~~~~~l~~~~~~~~r~ 410 (586)
..+ .. ....+..+......+-++||.+.-...-.|..+|... .+.++.+|+.....++.
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 000 00 0111222333455678999999999988888877433 46788999999999999
Q ss_pred HHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCC------------------ChhHHHHHhhhcccCCCcceEEE
Q 007879 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------------DLTSYVHRVGRTARAGREGYAVT 472 (586)
Q Consensus 411 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~------------------s~~~y~Qr~GR~gR~g~~g~~~~ 472 (586)
++.+.-..|..+++++|.++...+.|.++.+||..+.-. +....+||.||+||. ++|.|+.
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~ 769 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFH 769 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccc
Confidence 999999999999999999999999998888877533221 455678999999995 5899988
Q ss_pred Eecc
Q 007879 473 FVTD 476 (586)
Q Consensus 473 l~~~ 476 (586)
+.+.
T Consensus 770 lcs~ 773 (1282)
T KOG0921|consen 770 LCSR 773 (1282)
T ss_pred ccHH
Confidence 8765
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.21 E-value=2e-09 Score=111.10 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=105.9
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc------------------CCceEEecCCCCHHHHHHHHHHHhcC---CCcEEEecC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA------------------ALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATD 428 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~------------------~~~~~~l~~~~~~~~r~~~~~~f~~g---~~~vLvaT~ 428 (586)
+.++|||..+......+...|... +.+.+.++|.++..+|.+++.+|++. ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568999999999999999988643 24567889999999999999999874 235799999
Q ss_pred cccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHh--cCccccccchh
Q 007879 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKLKSRIVAE 500 (586)
Q Consensus 429 ~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~--~~~~~~~~~~~ 500 (586)
....|||+-+.+.+|.|+.-|++-...|.+.|+.|.|+...|+++-.--|..+-+.|..+. +..+..+++++
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd 872 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDD 872 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcc
Confidence 9999999999999999999999999999999999999988888876666666656555442 22344455544
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.19 E-value=3e-10 Score=111.19 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=59.9
Q ss_pred cCCCCCcHHHHH----HHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 143 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 143 ~~~~~~~~~Q~~----~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
+.|. |+|.|.+ ++..+..|.++++.+|||+|||++|++|++..+...+....+.+++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3455 6999999 4455666899999999999999999999988776544322334799999999998888777766
Q ss_pred H
Q 007879 219 I 219 (586)
Q Consensus 219 l 219 (586)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.19 E-value=3e-10 Score=111.19 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=59.9
Q ss_pred cCCCCCcHHHHH----HHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 143 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 143 ~~~~~~~~~Q~~----~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
+.|. |+|.|.+ ++..+..|.++++.+|||+|||++|++|++..+...+....+.+++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3455 6999999 4455666899999999999999999999988776544322334799999999998888777766
Q ss_pred H
Q 007879 219 I 219 (586)
Q Consensus 219 l 219 (586)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.60 E-value=6.5e-07 Score=98.46 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCC--Ccc--------eEEEEeccCcHHHHHHHHHHh
Q 007879 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG--REG--------YAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 420 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g--~~g--------~~~~l~~~~d~~~~~~i~~~~ 489 (586)
..+++++-+++.+|.|-|+|-.+.-.....|...-.|.+||.-|.. +.| .-.++++.+...+...|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5679999999999999999999999998889999999999988832 112 233445666677777777765
Q ss_pred c
Q 007879 490 G 490 (586)
Q Consensus 490 ~ 490 (586)
.
T Consensus 581 ~ 581 (986)
T PRK15483 581 N 581 (986)
T ss_pred H
Confidence 3
No 173
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.60 E-value=1.3e-07 Score=101.49 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=91.0
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC-CcE-EEecCcccccCCCCCccEEEEeCCCC
Q 007879 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDF-LIATDVAARGLDIIGVQTVINYACPR 449 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~-~~v-LvaT~~~~~Gldi~~v~~VI~~~~p~ 449 (586)
+++||+.-...+..+...|...++....+.|.|+...|.+.+..|..+. ..| +++..+++.|+++..+.+|+..|+=|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999999999889999999999999999999999999653 333 67788889999999999999999999
Q ss_pred ChhHHHHHhhhcccCCCcceEEE
Q 007879 450 DLTSYVHRVGRTARAGREGYAVT 472 (586)
Q Consensus 450 s~~~y~Qr~GR~gR~g~~g~~~~ 472 (586)
||..--|.+.|++|.|+.-.+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999997655544
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.59 E-value=1.9e-06 Score=94.84 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=55.8
Q ss_pred CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCch
Q 007879 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (586)
Q Consensus 245 ~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 314 (586)
....|+++||..|..-+-.+ .+++..+..|||||||++....-...+..+.+...+..-+.+|||.+..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~-ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG-IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcC-CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 34579999999997666554 5889999999999999998766667777777777777779999999853
No 175
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.55 E-value=2.9e-05 Score=83.01 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=50.8
Q ss_pred hccCCceEEEEeccHHHHHHHHHHHhhcC-------CceEEecCCCCHHHHHHHHHHHhc--------CCCcEEEecCcc
Q 007879 366 SKTFTSKVIIFSGTKQAAHRLKILFGLAA-------LKAAELHGNLTQAQRLEALELFRK--------QHVDFLIATDVA 430 (586)
Q Consensus 366 ~~~~~~~~lIF~~s~~~~~~l~~~l~~~~-------~~~~~l~~~~~~~~r~~~~~~f~~--------g~~~vLvaT~~~ 430 (586)
.+..+.++|||.+++...+.+..+....+ .+-..+ +=-+..+-..++..|-+ |-.-+.||-...
T Consensus 557 ~rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKV 635 (945)
T KOG1132|consen 557 ARVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKV 635 (945)
T ss_pred HhhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccc
Confidence 34446679999999998888855554321 111111 11123333444555543 223355777778
Q ss_pred cccCCCCC--ccEEEEeCCCC
Q 007879 431 ARGLDIIG--VQTVINYACPR 449 (586)
Q Consensus 431 ~~Gldi~~--v~~VI~~~~p~ 449 (586)
++|+|+.+ .+.||..++|.
T Consensus 636 SEGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 636 SEGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred cCCCCccccCCceeEEecCCC
Confidence 99999965 67899988885
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.43 E-value=1.4e-07 Score=101.41 Aligned_cols=224 Identities=18% Similarity=0.255 Sum_probs=130.8
Q ss_pred CcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 148 PTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 148 ~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
+.|.|.+.+..+.. ..++++.+|||+|||++|-+.++..+...+ ..++++++|..+|+..-.+.........|++
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p----~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP----GSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC----CccEEEEcCCchhhcccccchhhhcccCCce
Confidence 44556555544333 457889999999999999888887765543 3489999999999875444444433445888
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC-cCccCceEEEEeCcccccCCCcHHHHHH-------HHHH
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGFSAEIHE-------LVRL 298 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~l~~~~~lViDEah~l~~~~~~~~i~~-------i~~~ 298 (586)
+.-+.|....... -...++|+|+||++...+.++... -.+.+++.+|+||.|.+... ..+.+.. +-..
T Consensus 1004 ~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~ 1079 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQ 1079 (1230)
T ss_pred eEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccc
Confidence 8888888766522 234579999999998877764322 23678899999999987653 1111111 1122
Q ss_pred CCCCCcEEEEeecCc--hhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEec-----chhhhHHHHHHHHhhccCCc
Q 007879 299 CPKRRQTMLFSATLT--EDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-----MREVNQEAVLLSLCSKTFTS 371 (586)
Q Consensus 299 ~~~~~q~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 371 (586)
.++..+.+++|.-+. +++...+.. .+. +... ...++..+...+..++. .........+..+....+..
T Consensus 1080 t~~~vr~~glsta~~na~dla~wl~~---~~~-~nf~-~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~ 1154 (1230)
T KOG0952|consen 1080 TEEPVRYLGLSTALANANDLADWLNI---KDM-YNFR-PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIK 1154 (1230)
T ss_pred cCcchhhhhHhhhhhccHHHHHHhCC---CCc-CCCC-cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCC
Confidence 334455565554332 333332221 111 1111 11222233222222211 11122234455555677788
Q ss_pred eEEEEeccHHHHH
Q 007879 372 KVIIFSGTKQAAH 384 (586)
Q Consensus 372 ~~lIF~~s~~~~~ 384 (586)
++|||+.++....
T Consensus 1155 p~lifv~srrqtr 1167 (1230)
T KOG0952|consen 1155 PVLIFVSSRRQTR 1167 (1230)
T ss_pred ceEEEeecccccc
Confidence 9999998776443
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.37 E-value=1.2e-06 Score=83.83 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhhhhhHHHHhcC---CCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~---~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
++.+.|..|+..++.... .+|.||+|+|||.+ +..++..+..+ .....+.++||++|+...+..+.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 89999999999965 44555555211 0112345799999999999998888776
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.37 E-value=1.6e-06 Score=77.82 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=59.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCC--ceEEecCCCCHHHHHHHHHHHhcCCCcEEEecC--cccccCCCCC--ccEE
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATD--VAARGLDIIG--VQTV 442 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~--~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gldi~~--v~~V 442 (586)
.++++|||++|+...+.+...+..... ....+.. ....+..+++.|+.+...||+++. .+.+|+|+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999999876532 2223333 345788899999999999999999 8999999987 7889
Q ss_pred EEeCCCC
Q 007879 443 INYACPR 449 (586)
Q Consensus 443 I~~~~p~ 449 (586)
|..++|.
T Consensus 86 ii~glPf 92 (167)
T PF13307_consen 86 IIVGLPF 92 (167)
T ss_dssp EEES---
T ss_pred eecCCCC
Confidence 9999885
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.36 E-value=2.5e-05 Score=83.04 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=58.3
Q ss_pred CCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCC--Ccc-----------eEEEEeccCcHHHHHHHH
Q 007879 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG--REG-----------YAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 420 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g--~~g-----------~~~~l~~~~d~~~~~~i~ 486 (586)
..+++.+-.++-+|.|=|+|=.++-.....|..+=+|-+||.-|.. +.| .-.+++...+..+.+.|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4679999999999999999999999999999999999999988822 223 334567778888888888
Q ss_pred HHhc
Q 007879 487 KRAG 490 (586)
Q Consensus 487 ~~~~ 490 (586)
+.+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 7654
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.23 E-value=1.1e-05 Score=77.04 Aligned_cols=173 Identities=19% Similarity=0.184 Sum_probs=111.2
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----------CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeE
Q 007879 129 ELNLSRPLLRACEALGYSKPTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198 (586)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~----------g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 198 (586)
.+.|++.+... ..++..|.+++-.+.+ ....++...||.||..+..-.++.+++.+.+ +
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----r 93 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----R 93 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----c
Confidence 44666655432 2478999998866643 3467899999999998766666777665543 5
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC--cCc-------
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS--VDL------- 269 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~--~~l------- 269 (586)
.|++..+..|-....+.+..+... .+.+..+..- ... ....-.-.|+++|+..|......... ..+
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 899999999988888888776433 3333322221 000 00112347999999999876532111 111
Q ss_pred --cCceEEEEeCcccccCCCc--------HHHHHHHHHHCCCCCcEEEEeecCchhHHH
Q 007879 270 --DDLAVLILDEADRLLELGF--------SAEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (586)
Q Consensus 270 --~~~~~lViDEah~l~~~~~--------~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 318 (586)
..=.+||+||||+..+..- ...+..+.+.+|..+ ++..|||-..+...
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~N 226 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRN 226 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCce
Confidence 1124899999999876532 245566777787655 99999997655443
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.22 E-value=5.8e-06 Score=76.29 Aligned_cols=124 Identities=25% Similarity=0.242 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHhcCC--CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 007879 147 KPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~--~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~ 224 (586)
+|++-|.+++..++.+. -.++.|+.|+|||.+ +-.+...+...+ .++++++||...+..+.+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~g-----~~v~~~apT~~Aa~~L~~~~-------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAAG-----KRVIGLAPTNKAAKELREKT-------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHTT-------EEEEESSHHHHHHHHHHH-------T
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhCC-----CeEEEECCcHHHHHHHHHhh-------C
Confidence 47889999999997654 356889999999975 344555554432 36999999999887654441 1
Q ss_pred ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC---CcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCC
Q 007879 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~---~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~ 301 (586)
+.+ .|-..++....... ...+...++||||||-.+. ...+..++..++.
T Consensus 68 ~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 68 IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKK 119 (196)
T ss_dssp S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T
T ss_pred cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHh
Confidence 222 22111111110100 0114566799999999874 4556677777766
Q ss_pred -CCcEEEEeec
Q 007879 302 -RRQTMLFSAT 311 (586)
Q Consensus 302 -~~q~i~~SAT 311 (586)
..++|++.=+
T Consensus 120 ~~~klilvGD~ 130 (196)
T PF13604_consen 120 SGAKLILVGDP 130 (196)
T ss_dssp -T-EEEEEE-T
T ss_pred cCCEEEEECCc
Confidence 4555555443
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.16 E-value=2.8e-06 Score=77.69 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=71.4
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH-------HHHHHH
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-------HSMIEK 218 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~-------~~~~~~ 218 (586)
...+..|..++..++..+-+++.||.|||||+.++..+++.+..+.- -+++|+-|..+....+ .+.+..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~----~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEY----DKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-----SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC----cEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 45788999999999988888899999999999887777777765332 2688888876541110 000000
Q ss_pred HhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHH
Q 007879 219 IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (586)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~ 298 (586)
+.....-....+.+... ...+.....|-+.++..+. +..+. -.+||||||+.+. ...+..++..
T Consensus 79 ~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-------Grt~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 79 YLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-------GRTFD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp TTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-------T--B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-------Ccccc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 00000000000001111 1111122345555533322 12233 3799999999873 5667778888
Q ss_pred CCCCCcEEEEeec
Q 007879 299 CPKRRQTMLFSAT 311 (586)
Q Consensus 299 ~~~~~q~i~~SAT 311 (586)
+..+.+++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8777777666544
No 183
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.14 E-value=5.8e-05 Score=75.84 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=68.4
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCC------ceEEecCCCCHHHHHHHHHHHh----cCCCcEEEe--cCcccccC
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILFGLAAL------KAAELHGNLTQAQRLEALELFR----KQHVDFLIA--TDVAARGL 434 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~~------~~~~l~~~~~~~~r~~~~~~f~----~g~~~vLva--T~~~~~Gl 434 (586)
+..++++++|.+++.-.+.+.......|+ .-+.+-+.-...+-.-++...+ +|+-.||++ -.-.++|+
T Consensus 527 k~vpdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgi 606 (755)
T KOG1131|consen 527 KIVPDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGI 606 (755)
T ss_pred ccCCCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCc
Confidence 44467899999998877777665554443 1123333333333344444443 466667755 45568999
Q ss_pred CCCCc--cEEEEeCCCCCh------------------------------hHHHHHhhhcccCCCcceEEEEecc
Q 007879 435 DIIGV--QTVINYACPRDL------------------------------TSYVHRVGRTARAGREGYAVTFVTD 476 (586)
Q Consensus 435 di~~v--~~VI~~~~p~s~------------------------------~~y~Qr~GR~gR~g~~g~~~~l~~~ 476 (586)
|+.+- +.||.++.|.-. ..-.|..||+-| |+.-+...++.+
T Consensus 607 dF~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr-~K~dYg~mI~aD 679 (755)
T KOG1131|consen 607 DFDHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLR-GKTDYGLMIFAD 679 (755)
T ss_pred ccccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHh-ccccceeeEeee
Confidence 99775 489999999621 122488899988 556666666654
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.14 E-value=4.9e-05 Score=70.14 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=95.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~---g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
.|....-+..++=-+. .++ .+++.|.+++..+.+ |++.+.++-||.|||.+ ++|++..++..+.. -|-++
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~----Lvrvi 76 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR----LVRVI 76 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----EEEEE
Confidence 3444555555544332 234 489999999999886 57999999999999987 79999988866553 47777
Q ss_pred cCcHHHHHHHHHHHHHHhh-cCCceEEEE--eCCCChHHH----H----HHhcCCCcEEEECcHHHHHHHHhc------C
Q 007879 203 TPTRELAVQVHSMIEKIAQ-FTDIRCCLV--VGGLSTKMQ----E----TALRSMPDIVVATPGRMIDHLRNS------M 265 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~-~~~~~~~~~--~~~~~~~~~----~----~~~~~~~~Ili~Tp~~l~~~l~~~------~ 265 (586)
+| ++|..|..+.+..-.. -.+-++..+ ......... . ........|+++||+.++.+.-.. .
T Consensus 77 Vp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~ 155 (229)
T PF12340_consen 77 VP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDG 155 (229)
T ss_pred cC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhc
Confidence 77 5688998888875332 223333222 222221110 1 112234579999999886543211 0
Q ss_pred Cc-----------CccCceEEEEeCcccccC
Q 007879 266 SV-----------DLDDLAVLILDEADRLLE 285 (586)
Q Consensus 266 ~~-----------~l~~~~~lViDEah~l~~ 285 (586)
.. .+..-..-|+||+|.++.
T Consensus 156 ~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 156 KPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 133344579999998765
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.11 E-value=4.8e-05 Score=71.58 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=80.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH-----------HHH
Q 007879 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA-----------VQV 212 (586)
Q Consensus 144 ~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La-----------~Q~ 212 (586)
++...+..|...+.++..+..+++.|++|+|||+.....+++.+.... -.+++|.=|+.... ..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~----~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD----VDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----eeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 556678899999999988888889999999999876555555554422 22567776665421 111
Q ss_pred HHHHHHHhhcCCceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHH
Q 007879 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291 (586)
Q Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~ 291 (586)
.-++..+...... +.+. ......+. ....|-|.... +++. -++ .-++||||||+.+. ...
T Consensus 132 ~p~~~pi~D~L~~----~~~~---~~~~~~~~~~~~~Iei~~l~----ymRG---rtl-~~~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGA---SFMQYCLRPEIGKVEIAPFA----YMRG---RTF-ENAVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHHH----HhCh---HHHHHHHHhccCcEEEecHH----HhcC---Ccc-cCCEEEEechhcCC----HHH
Confidence 1122211111100 0111 11111111 12245555422 2332 223 23799999999874 466
Q ss_pred HHHHHHHCCCCCcEEEEe
Q 007879 292 IHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 292 i~~i~~~~~~~~q~i~~S 309 (586)
+..++..+..+.++|+..
T Consensus 193 ~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHhhcCCCCEEEEeC
Confidence 777777777777655543
No 186
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.09 E-value=1.5e-05 Score=82.28 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=66.0
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 139 ACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 139 ~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
.+...++.++..-|..|+.++|+..-.|++||+|+|||.+- ..++-++.... ...|||.+|....+.|+++.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~~~----~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQH----AGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHHhc----CCceEEEcccchhHHHHHHHHHh
Confidence 33445788899999999999999999999999999999874 44444454443 33699999999999999888876
Q ss_pred HhhcCCceEEEEeC
Q 007879 219 IAQFTDIRCCLVVG 232 (586)
Q Consensus 219 l~~~~~~~~~~~~~ 232 (586)
+|+++.-+..
T Consensus 477 ----tgLKVvRl~a 486 (935)
T KOG1802|consen 477 ----TGLKVVRLCA 486 (935)
T ss_pred ----cCceEeeeeh
Confidence 4566655443
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.06 E-value=4.1e-05 Score=82.19 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEE
Q 007879 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (586)
Q Consensus 149 ~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~ 228 (586)
.++|+.++..++.++-+++.|+.|+|||.+ +..++..+..........++++++||--.|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 379999999999999999999999999976 34455444432211113479999999999888777765532111110
Q ss_pred EEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC-----CcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCC
Q 007879 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-----SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (586)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-----~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~ 303 (586)
. .......+-..|-.+|+....... .-....+++||||||-.+. ...+..+++.++...
T Consensus 224 -------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 -------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred -------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 0 000011122444444433211100 0112357899999998764 345667788888888
Q ss_pred cEEEEee
Q 007879 304 QTMLFSA 310 (586)
Q Consensus 304 q~i~~SA 310 (586)
++|++.=
T Consensus 288 rlIlvGD 294 (586)
T TIGR01447 288 KLILLGD 294 (586)
T ss_pred EEEEECC
Confidence 8776654
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.05 E-value=2.1e-05 Score=80.80 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~ 216 (586)
.+.+-|..|+..+.+.++ .++.||+|+|||.+. .-+++.+...++ +|||..||...+.-+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~~k-----~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQKK-----RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHcCC-----eEEEEcCchHHHHHHHHHh
Confidence 477899999999999865 469999999999874 455555555544 6999999999988777753
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=98.03 E-value=1.7e-05 Score=60.34 Aligned_cols=60 Identities=28% Similarity=0.386 Sum_probs=41.0
Q ss_pred HHHHHhcCCC-eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 007879 155 CIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (586)
Q Consensus 155 ~i~~il~g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~ 216 (586)
++...+.+.. ++|.||+|||||.+ ++.++..+....... +.++||++|++..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTT-LAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHH-HHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 55699999999976 466666665432222 447999999999999887776
No 190
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.02 E-value=7.7e-07 Score=94.44 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=58.2
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhc---CCCcEEEecCccccc
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVDFLIATDVAARG 433 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~---g~~~vLvaT~~~~~G 433 (586)
..+++|+||.+.....+.|..++...+ .+..++|..+...|..++..|+. .+..+|++|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 347899999999999999999999999 99999999999999999999984 256689999988766
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.96 E-value=6.4e-05 Score=80.87 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEE
Q 007879 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (586)
Q Consensus 149 ~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~ 228 (586)
.++|+.|+-..+.++-+++.|++|+|||.+ +..++..+..... ....++++++||...|..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 589999999999999999999999999976 3444444433221 123479999999999998887776533222110
Q ss_pred EEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC-----CcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCC
Q 007879 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-----SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (586)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~-----~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~ 303 (586)
.. .......-..|-.+|+....... .-..-.+++||||||-.+- ...+..+++.++...
T Consensus 230 -------~~-----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 -------DE-----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred -------hh-----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 00 00000111234333332211100 0122356899999998763 455667788888888
Q ss_pred cEEEEeec
Q 007879 304 QTMLFSAT 311 (586)
Q Consensus 304 q~i~~SAT 311 (586)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88777543
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.94 E-value=8.3e-05 Score=80.96 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 146 SKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
..+.+.|..++..++.. ..+++.||+|+|||.+ +..++..+...+ .+||+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~g-----~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKRG-----LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC-----CCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999999887 5677999999999976 355555555432 2699999999999998887765
No 193
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.91 E-value=3e-05 Score=78.81 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=66.5
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (586)
-++|.|..|||||+. ++.++..+... ..+.+++++++...|...+.+.+..-. .
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~~---~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------ 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQNS---EEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------ 56 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhcc---ccCCceEEEEecchHHHHHHHHHhhhc----------c------------
Confidence 367999999999987 45666655111 123368999999999888777776522 0
Q ss_pred cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-------cHHHHHHHHHH
Q 007879 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-------FSAEIHELVRL 298 (586)
Q Consensus 244 ~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-------~~~~i~~i~~~ 298 (586)
.......+..+..+...+.. .......+++|||||||++...+ ....+..+++.
T Consensus 57 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 PKLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cchhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00012234444444443331 12345789999999999998732 23455555554
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.82 E-value=0.00022 Score=78.91 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=79.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.++ .+++-|++++..+..++-+++.|+.|+|||.+ +-.++..+..... ...+++++||-..|.++.+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~~---~~~v~l~ApTg~AA~~L~e~------- 387 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELGG---LLPVGLAAPTGRAAKRLGEV------- 387 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcCC---CceEEEEeCchHHHHHHHHh-------
Confidence 444 59999999999999988899999999999975 3344443332221 13688999999888754332
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc----CCcCccCceEEEEeCcccccCCCcHHHHHHHHHH
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~----~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~ 298 (586)
++... .|-.+|+...... ..-.....++||||||+.+.. ..+..++..
T Consensus 388 ~g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~ 439 (720)
T TIGR01448 388 TGLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAA 439 (720)
T ss_pred cCCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHh
Confidence 12211 1111111100000 000123567999999998753 345666677
Q ss_pred CCCCCcEEEEeec
Q 007879 299 CPKRRQTMLFSAT 311 (586)
Q Consensus 299 ~~~~~q~i~~SAT 311 (586)
++...++|++.=+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 7877777776443
No 195
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.49 E-value=0.00023 Score=61.02 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=23.5
Q ss_pred eEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 273 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
.+|||||||++.. ...+..+........-.+++++|+
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6899999999742 444455544444444456666664
No 196
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.44 E-value=0.00029 Score=70.56 Aligned_cols=124 Identities=24% Similarity=0.237 Sum_probs=74.0
Q ss_pred CcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceE
Q 007879 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~ 227 (586)
+++-|..++.. ....++|.|..|||||.+.+--++ .++.... ..+.++|+|++|+..|..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-Hhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc-
Confidence 57889999988 677899999999999988544444 4444332 345679999999999999998888764432210
Q ss_pred EEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCc-cCceEEEEeCcc
Q 007879 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL-DDLAVLILDEAD 281 (586)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l-~~~~~lViDEah 281 (586)
................+.|+|-..+...+-....... -.-.+-|+|+..
T Consensus 76 -----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 -----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred -----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000011122223356889998877554432111111 122456777776
No 197
>PRK04296 thymidine kinase; Provisional
Probab=97.40 E-value=0.00062 Score=62.52 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc---HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT---RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt---r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (586)
.-.++.|++|+|||.. ++-++.++..... +++|+-|. +....+ +....++...
T Consensus 3 ~i~litG~~GsGKTT~-~l~~~~~~~~~g~-----~v~i~k~~~d~~~~~~~-------i~~~lg~~~~----------- 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTE-LLQRAYNYEERGM-----KVLVFKPAIDDRYGEGK-------VVSRIGLSRE----------- 58 (190)
T ss_pred EEEEEECCCCCHHHHH-HHHHHHHHHHcCC-----eEEEEeccccccccCCc-------EecCCCCccc-----------
Confidence 3457999999999976 4566665544332 58887662 222111 1111121110
Q ss_pred HHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 240 ~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
.+.+..+..++..+.. .-.++++|||||+|.+. ..++..+++.+......+++++-.
T Consensus 59 --------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 59 --------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred --------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 1123444555555443 23468899999998642 233555666644344455555543
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.39 E-value=0.0014 Score=56.69 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=40.7
Q ss_pred EEecCCCCHHHHHHHHHHHhcCC-CcEEEecCcccccCCCCC--ccEEEEeCCCC
Q 007879 398 AELHGNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDIIG--VQTVINYACPR 449 (586)
Q Consensus 398 ~~l~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldi~~--v~~VI~~~~p~ 449 (586)
..+..+....+...+++.|+... ..||++|..+.+|+|+++ ++.||..++|.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44445555666788999998764 379999988999999988 57899888775
No 199
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0027 Score=64.51 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=68.8
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEE-EEEcCc-HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV-LILTPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v-lil~Pt-r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
+.+++.||||+|||++. .-+..++...... .+.+| +|-+-+ |.-+..+ +..++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~-aKLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~----------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTI-AKLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA----------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHHhhhcc-CCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-----------
Confidence 45779999999999874 3333333221110 11123 333333 3443322 44444444554422
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-cHHHHHHHHHHCCCC-CcEEEEeecCchh-HH
Q 007879 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKR-RQTMLFSATLTED-VD 317 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~-~q~i~~SAT~~~~-~~ 317 (586)
+.++..+...+.. +.++++||||++.+..... ....+..++...... ...+.+|||.... +.
T Consensus 239 ----------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 239 ----------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ----------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 1234445444443 3578899999999876321 233445555544433 3568889998744 33
Q ss_pred HHHHHh
Q 007879 318 ELIKLS 323 (586)
Q Consensus 318 ~~~~~~ 323 (586)
+.+..+
T Consensus 304 ~~~~~~ 309 (388)
T PRK12723 304 EIFHQF 309 (388)
T ss_pred HHHHHh
Confidence 344443
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.34 E-value=0.0041 Score=69.27 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 147 KPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
.+++-|..++..++.+ +-+++.|++|+|||.+ +-.+..++... +.++++++||--.|..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~~----g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEAA----GYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHhC----CCeEEEEeCcHHHHHHH
Confidence 4899999999999885 5567999999999975 33333333321 33699999998876654
No 201
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.28 E-value=0.00095 Score=64.95 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=48.8
Q ss_pred HcCCCCCcHHHHHHHHHHhcCC--CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 142 ALGYSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~--~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
.+|+......|..|+..++.-. =+.+.|+.|||||+.++.+.+...+.++.- -+++|.=|+..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y---~KiiVtRp~vpv 288 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY---RKIIVTRPTVPV 288 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh---ceEEEecCCcCc
Confidence 3588877788999999888753 345899999999998888888877765542 267887787655
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.23 E-value=0.0018 Score=56.08 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCC---ceEEecCCCCHHHHHHHHHHHhcCCC---cEEEecCc--ccccCCCCC--ccEEEEeCCCC
Q 007879 383 AHRLKILFGLAAL---KAAELHGNLTQAQRLEALELFRKQHV---DFLIATDV--AARGLDIIG--VQTVINYACPR 449 (586)
Q Consensus 383 ~~~l~~~l~~~~~---~~~~l~~~~~~~~r~~~~~~f~~g~~---~vLvaT~~--~~~Gldi~~--v~~VI~~~~p~ 449 (586)
.+.+...+...+. ....+.......+...+++.|++... .||+++.. +++|||+++ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3445555554432 12233333333455788889987543 68988887 899999988 67899988885
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=97.22 E-value=0.0061 Score=60.76 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=72.2
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc---HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT---RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt---r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
-+++.|++|+|||++. .-+...+... +.+++++... .....|+...... .++.+.....+..
T Consensus 142 vi~~~G~~GvGKTTti-akLA~~l~~~-----g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~d----- 206 (336)
T PRK14974 142 VIVFVGVNGTGKTTTI-AKLAYYLKKN-----GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGAD----- 206 (336)
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHHHHc-----CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCC-----
Confidence 4668999999999862 3333333322 1246555432 2344455444443 4544432111111
Q ss_pred HHhcCCCcEEEECcHH-HHHHHHhcCCcCccCceEEEEeCccccc-CCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHH
Q 007879 241 TALRSMPDIVVATPGR-MIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~-l~~~l~~~~~~~l~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 318 (586)
|.. +.+.+... ....+++|+||.+.++. +..+...+..+.+...+..-+++++||...+...
T Consensus 207 -------------p~~v~~~ai~~~---~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~ 270 (336)
T PRK14974 207 -------------PAAVAYDAIEHA---KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE 270 (336)
T ss_pred -------------HHHHHHHHHHHH---HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH
Confidence 111 12222211 12356799999999986 3345666777777776777788899998776665
Q ss_pred HHHHh
Q 007879 319 LIKLS 323 (586)
Q Consensus 319 ~~~~~ 323 (586)
.+..+
T Consensus 271 ~a~~f 275 (336)
T PRK14974 271 QAREF 275 (336)
T ss_pred HHHHH
Confidence 55544
No 204
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.21 E-value=0.0063 Score=68.97 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=74.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 143 LGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.|+ .+++-|..++..++.+++ +++.|..|+|||.+ +-.+... +... +.+|+.++||--.|..+.+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~-~e~~----G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREA-WEAA----GYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHH-HHHc----CCeEEEecCcHHHHHHHhh-------
Confidence 444 599999999999998765 56999999999975 3333333 3321 3469999999877654322
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC-C
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-P 300 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~ 300 (586)
..++.. .|-.+|+...... ...+...++||||||-.+... .+..++... +
T Consensus 409 ~tGi~a------------------------~TI~sll~~~~~~-~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~ 459 (988)
T PRK13889 409 GSGIAS------------------------RTIASLEHGWGQG-RDLLTSRDVLVIDEAGMVGTR----QLERVLSHAAD 459 (988)
T ss_pred ccCcch------------------------hhHHHHHhhhccc-ccccccCcEEEEECcccCCHH----HHHHHHHhhhh
Confidence 122211 1212222111111 123556789999999976543 334444433 3
Q ss_pred CCCcEEEEeec
Q 007879 301 KRRQTMLFSAT 311 (586)
Q Consensus 301 ~~~q~i~~SAT 311 (586)
...++|++.=+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 45566665443
No 205
>PRK08181 transposase; Validated
Probab=97.18 E-value=0.0088 Score=57.78 Aligned_cols=110 Identities=20% Similarity=0.194 Sum_probs=60.1
Q ss_pred HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChH
Q 007879 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (586)
++-.+++++++||+|+|||..+ ..+...+...+. +|++ ++...|..++..... .
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~g~-----~v~f-~~~~~L~~~l~~a~~---------------~---- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLA-AAIGLALIENGW-----RVLF-TRTTDLVQKLQVARR---------------E---- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHH-HHHHHHHHHcCC-----ceee-eeHHHHHHHHHHHHh---------------C----
Confidence 4456789999999999999753 333444433322 3444 445556554321100 0
Q ss_pred HHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-cHHHHHHHHHHCCCCCcEEEEeecCchh
Q 007879 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 238 ~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
.+...++.. +.+.++|||||.+...... ....+..+++.......+|+.|-..+..
T Consensus 156 --------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 156 --------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred --------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 011122221 3456799999999775432 2345666666554444555555544433
No 206
>PRK06526 transposase; Provisional
Probab=97.15 E-value=0.0047 Score=59.27 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=27.8
Q ss_pred cCceEEEEeCcccccCCC-cHHHHHHHHHHCCCCCcEEEEeecCchh
Q 007879 270 DDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
..+++|||||+|...... ....+..+++.......+|+.|...+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 456899999999875322 2334555655433344567766666543
No 207
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0031 Score=63.56 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHh-cCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~-~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
|..+++.||||+|||++. ..+...+. ..+. .+|.++.. ...-.--.+.+..++...++.+..
T Consensus 137 g~ii~lvGptGvGKTTti-akLA~~~~~~~G~----~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~----------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT-AKLAARCVMRFGA----SKVALLTT-DSYRIGGHEQLRIFGKILGVPVHA----------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHhcCC----CeEEEEec-ccccccHHHHHHHHHHHcCCceEe-----------
Confidence 567789999999999874 33333332 2111 13444332 221111123344444444544332
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-cHHHHHHHHHHCCCCCcEEEEeecCchhH-HH
Q 007879 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV-DE 318 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~-~~ 318 (586)
+.+++.+...+.. +.+.++|+||.+-...... ....+..+.........++++|||..... .+
T Consensus 200 ----------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 200 ----------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred ----------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 3344444444433 3456889999997653221 22333333222223344788899986554 33
Q ss_pred HHHHh
Q 007879 319 LIKLS 323 (586)
Q Consensus 319 ~~~~~ 323 (586)
.++.+
T Consensus 265 vi~~f 269 (374)
T PRK14722 265 VVQAY 269 (374)
T ss_pred HHHHH
Confidence 44444
No 208
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.08 E-value=0.014 Score=58.46 Aligned_cols=133 Identities=24% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
++.+.+.||||-|||++. .-+..++....+. ..-.||.+-|--.+. ++.++.++.-.++++.
T Consensus 203 ~~vi~LVGPTGVGKTTTl-AKLAar~~~~~~~--~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~------------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL-AKLAARYVMLKKK--KKVAIITTDTYRIGA--VEQLKTYADIMGVPLE------------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHH-HHHHHHHHhhccC--cceEEEEeccchhhH--HHHHHHHHHHhCCceE-------------
Confidence 677789999999999872 3333333211111 113555555543332 3446666555566544
Q ss_pred HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc-CCCcHHHHHHHHHHCCCCCcEEEEeecCch-hHHHH
Q 007879 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTE-DVDEL 319 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~~~~ 319 (586)
++-+|.-|...+.. +.++++|.||=+-+-. +......+..+....+..--.+.+|||... ++.+.
T Consensus 265 --------vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 265 --------VVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred --------EecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 35566666666554 4567888888877643 333455666666666444456888999764 45555
Q ss_pred HHHhcC
Q 007879 320 IKLSLT 325 (586)
Q Consensus 320 ~~~~~~ 325 (586)
+..+-.
T Consensus 332 ~~~f~~ 337 (407)
T COG1419 332 IKQFSL 337 (407)
T ss_pred HHHhcc
Confidence 555433
No 209
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.05 E-value=0.0025 Score=69.32 Aligned_cols=136 Identities=19% Similarity=0.133 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
.+.+.+.+. -+..+..-|++|+-.++..+| .+|.|-+|+|||.+ +..++..++..++ +||+.+-|-..+
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~gk-----kVLLtsyThsAV 726 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVALGK-----KVLLTSYTHSAV 726 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHcCC-----eEEEEehhhHHH
Confidence 345555443 234688899999999888775 56899999999986 3444555554444 699999888775
Q ss_pred HHHHHHHHHHhhcCCceEEEEeCCCChHH-----------------HHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKM-----------------QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.-+ +.++..+ ++.+.-+-....... ....+.+.+.||.+|--.+-..+ +..+.+
T Consensus 727 DNI---LiKL~~~-~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~~R~F 797 (1100)
T KOG1805|consen 727 DNI---LIKLKGF-GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FVNRQF 797 (1100)
T ss_pred HHH---HHHHhcc-CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hhcccc
Confidence 544 4444322 333221111111111 11223455789998854443322 335679
Q ss_pred eEEEEeCcccccC
Q 007879 273 AVLILDEADRLLE 285 (586)
Q Consensus 273 ~~lViDEah~l~~ 285 (586)
+++|||||-.++.
T Consensus 798 D~cIiDEASQI~l 810 (1100)
T KOG1805|consen 798 DYCIIDEASQILL 810 (1100)
T ss_pred CEEEEcccccccc
Confidence 9999999998753
No 210
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.02 E-value=0.014 Score=66.56 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 131 NLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 131 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
++++..+......++ .|++-|..++..+.. ++-+++.|+.|+|||.+ +-++...+... +.+|+.++||-..|
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~-----G~~V~g~ApTgkAA 438 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA-----GYRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-----CCeEEEEcCcHHHH
Confidence 455555555444444 599999999998865 45567999999999975 34444433222 33699999998776
Q ss_pred HHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcH
Q 007879 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (586)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~ 289 (586)
..+.+ ..|+....+ .+++...... ...+..-.+||||||-.+..
T Consensus 439 ~~L~e-------~~Gi~a~TI------------------------as~ll~~~~~-~~~l~~~~vlVIDEAsMv~~---- 482 (1102)
T PRK13826 439 EGLEK-------EAGIQSRTL------------------------SSWELRWNQG-RDQLDNKTVFVLDEAGMVAS---- 482 (1102)
T ss_pred HHHHH-------hhCCCeeeH------------------------HHHHhhhccC-ccCCCCCcEEEEECcccCCH----
Confidence 55422 224332221 1111111111 12355667999999997643
Q ss_pred HHHHHHHHHCC-CCCcEEEEeec
Q 007879 290 AEIHELVRLCP-KRRQTMLFSAT 311 (586)
Q Consensus 290 ~~i~~i~~~~~-~~~q~i~~SAT 311 (586)
..+..++...+ ...++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 33444555544 45566666543
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.02 E-value=0.002 Score=61.69 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCcEEEecCcccccCCCCC--------ccEEEEeCCCCChhHHHHHhhhcccCCCc-ceEEEEecc---C
Q 007879 410 LEALELFRKQHVDFLIATDVAARGLDIIG--------VQTVINYACPRDLTSYVHRVGRTARAGRE-GYAVTFVTD---N 477 (586)
Q Consensus 410 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~--------v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~-g~~~~l~~~---~ 477 (586)
....+.|.+|+..|+|.|++++.|+-+.. -++-|...+||+....+|..||++|.|+. .-.|.++.. .
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 35678999999999999999999999853 24567889999999999999999999873 444555443 3
Q ss_pred cHHHHHHHHHH
Q 007879 478 DRSLLKAIAKR 488 (586)
Q Consensus 478 d~~~~~~i~~~ 488 (586)
++.+...+.++
T Consensus 131 E~Rfas~va~r 141 (278)
T PF13871_consen 131 ERRFASTVARR 141 (278)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.98 E-value=0.011 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
++.+++.|++|+|||.. +..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999974 34444443
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.94 E-value=0.0035 Score=63.96 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHH------hcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 147 KPTPIQAACIPLA------LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 147 ~~~~~Q~~~i~~i------l~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
+|++-|+.++..+ ..+..+++.|+-|+|||. ++-++...+... +..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~~----~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRSR----GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhccc----cceEEEecchHHHHHhc
Confidence 3677899998888 567889999999999996 455555555442 23699999999887755
No 214
>PRK06921 hypothetical protein; Provisional
Probab=96.94 E-value=0.0088 Score=57.93 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=27.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q 211 (586)
.+.++++.|++|+|||.. +..+...+.... +..|+++. ...+..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~~----g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRKK----GVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhhc----CceEEEEE-HHHHHHH
Confidence 356799999999999975 345555554431 12455544 4444443
No 215
>PHA02533 17 large terminase protein; Provisional
Probab=96.92 E-value=0.0085 Score=63.79 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC--
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-- 224 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~-- 224 (586)
.|.|+|...+..+..++-.++..+=..|||.+....++..+...+ +..+++++|++.-|..+.+.++.+....+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~----~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK----DKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 488999999988766777788888999999876544443333322 34799999999999988887776544322
Q ss_pred ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCC--C
Q 007879 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--R 302 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~--~ 302 (586)
....+.... ...-.+.++..|.+.|. +.....-.++.++|+||+|.+.+ +...+..+...+.. .
T Consensus 135 ~~~~i~~~~----~~~I~l~NGS~I~~lss--------~~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 135 LQPGIVEWN----KGSIELENGSKIGAYAS--------SPDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred hhcceeecC----ccEEEeCCCCEEEEEeC--------CCCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 111111100 01111245556644441 11112223567899999998754 33333434333332 2
Q ss_pred CcEEEEeecC
Q 007879 303 RQTMLFSATL 312 (586)
Q Consensus 303 ~q~i~~SAT~ 312 (586)
.+++++|.+.
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 3455555543
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.90 E-value=0.0037 Score=57.49 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=68.7
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc-C-cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-P-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~-P-tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
+++.||||+|||.+. .-+..++...+. ++.+++ - .|.-|. ++++.+++..++.+........
T Consensus 4 i~lvGptGvGKTTt~-aKLAa~~~~~~~-----~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI-AKLAARLKLKGK-----KVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESD------- 67 (196)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHHTT-------EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSC-------
T ss_pred EEEECCCCCchHhHH-HHHHHHHhhccc-----cceeecCCCCCccHH---HHHHHHHHHhccccchhhcchh-------
Confidence 568999999999873 444444443322 233333 2 343333 3344444445665543222211
Q ss_pred hcCCCcEEEECcHHH-HHHHHhcCCcCccCceEEEEeCcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHH
Q 007879 243 LRSMPDIVVATPGRM-IDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (586)
Q Consensus 243 ~~~~~~Ili~Tp~~l-~~~l~~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 320 (586)
|..+ ...+.. ...+++++|+||=+-+... ......+..++....+..-.+.+|||...+....+
T Consensus 68 -----------~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 68 -----------PAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp -----------HHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred -----------hHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 2222 222222 1124678999999887643 22455666777777666667899999987655443
No 217
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.89 E-value=0.0033 Score=59.42 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=63.7
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCC-CChHHHHHHhcC-CCcEEEECcHHHHHHHHhcCCcCcc
Q 007879 193 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG-LSTKMQETALRS-MPDIVVATPGRMIDHLRNSMSVDLD 270 (586)
Q Consensus 193 ~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~Ili~Tp~~l~~~l~~~~~~~l~ 270 (586)
....|.+|||+..-.-|..+.+.+..+. ..+..++-++.. ....++...+.. ..+|.||||+||..++... .+.++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l~ 200 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSLS 200 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCcc
Confidence 3456789999997666666666666542 112344444444 366777777764 6899999999999999765 78899
Q ss_pred CceEEEEeCccc
Q 007879 271 DLAVLILDEADR 282 (586)
Q Consensus 271 ~~~~lViDEah~ 282 (586)
++.+||||=-|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998764
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.85 E-value=0.02 Score=59.29 Aligned_cols=127 Identities=25% Similarity=0.322 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHh--cCCCCCCCeEEEEE-cCc-HHHHHHHHHHHHHHhhcCCceEEEEeCCCChH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLL--YRPKRIPAIRVLIL-TPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~--~~~~~~~~~~vlil-~Pt-r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (586)
++.+++.||||+|||++. .-+...+. ..+. +|.++ +-+ |.-+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~-~kLA~~~~~~~~g~-----~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~--------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTL-AKLAARYALLYGKK-----KVALITLDTYRIGAV---EQLKTYAKIMGIPVE--------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCC-----eEEEEECCccHHHHH---HHHHHHHHHhCCceE---------
Confidence 456789999999999763 33333332 2221 34433 322 32222 334433333343322
Q ss_pred HHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-CCcHHHHHHHHHHC-CCCCcEEEEeecCchh
Q 007879 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLC-PKRRQTMLFSATLTED 315 (586)
Q Consensus 238 ~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~ 315 (586)
.+.++..+...+.. +..+++||||-+-+... ......+..++... ......+++|||....
T Consensus 283 ------------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 283 ------------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 22344555555543 23678999999876432 22334455555522 2234478899998754
Q ss_pred -HHHHHHHh
Q 007879 316 -VDELIKLS 323 (586)
Q Consensus 316 -~~~~~~~~ 323 (586)
+...+..+
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 44444443
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.83 E-value=0.003 Score=54.46 Aligned_cols=42 Identities=24% Similarity=0.080 Sum_probs=26.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
+..+++.||+|+|||... ..++..+.... ..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~~~~-----~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELGPPG-----GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccCCCC-----CCEEEECCEEccc
Confidence 457889999999999753 33333322211 1377777766543
No 220
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.82 E-value=0.0026 Score=71.08 Aligned_cols=153 Identities=21% Similarity=0.155 Sum_probs=92.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc------------CCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEE
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY------------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~------------~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~ 229 (586)
|+++++...+|+|||..-+.-.+....+ +......+.+|||+|. ++..||...+..-+.. ++++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceEEE
Confidence 6778999999999998644333332111 0111123458999996 5558899888875433 356666
Q ss_pred EeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC-------------cC----c--cCceEEEEeCcccccCCCcHH
Q 007879 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-------------VD----L--DDLAVLILDEADRLLELGFSA 290 (586)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-------------~~----l--~~~~~lViDEah~l~~~~~~~ 290 (586)
+.|-....-....-.-.+|||+||+..|...+..... .. | -.|=-|++|||+.+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 6553221111112223479999999999887754311 11 1 1133589999997765 345
Q ss_pred HHHHHHHHCCCCCcEEEEeecCchhHHHH
Q 007879 291 EIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (586)
Q Consensus 291 ~i~~i~~~~~~~~q~i~~SAT~~~~~~~~ 319 (586)
...+....++ ....-.+|+||-..+..+
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 5555555554 344689999976555444
No 221
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.75 E-value=0.0045 Score=59.02 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=31.7
Q ss_pred CcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 266 ~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
......++++|+||||.|.... ...+...+...+....+++.+..+.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3446778999999999986432 3444555555666666777776654
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.028 Score=56.56 Aligned_cols=128 Identities=19% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE-c-CcH-HHHHHHHHHHHHHhhcCCceEEEEeCCCChHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-T-PTR-ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil-~-Ptr-~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (586)
+.+++.||||+|||++. ..+...+...+. ++.++ + |.| ..+.|+..... ..++.+
T Consensus 242 ~vI~LVGptGvGKTTTi-aKLA~~L~~~Gk-----kVglI~aDt~RiaAvEQLk~yae----~lgipv------------ 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL-AKMAWQFHGKKK-----TVGFITTDHSRIGTVQQLQDYVK----TIGFEV------------ 299 (436)
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHHHHcCC-----cEEEEecCCcchHHHHHHHHHhh----hcCCcE------------
Confidence 45679999999999863 333333332222 34443 3 233 23334433222 223322
Q ss_pred HHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCch-hHH
Q 007879 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE-DVD 317 (586)
Q Consensus 240 ~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~~ 317 (586)
+++.+|..+.+.+.... .-.++++|+||-+-+.... .....+..++....+..-++.+|||... ++.
T Consensus 300 ---------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 300 ---------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ---------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 22346666766654421 1125789999999876532 1233344444443334445778998664 445
Q ss_pred HHHHHh
Q 007879 318 ELIKLS 323 (586)
Q Consensus 318 ~~~~~~ 323 (586)
..+..+
T Consensus 369 ~i~~~F 374 (436)
T PRK11889 369 EIITNF 374 (436)
T ss_pred HHHHHh
Confidence 555554
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.65 E-value=0.027 Score=53.61 Aligned_cols=108 Identities=20% Similarity=0.342 Sum_probs=58.0
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
..+++.|++|+|||.. +..+...+...+. .|+++ +...|...+...+.. .+
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~g~-----~v~~i-t~~~l~~~l~~~~~~-------------~~--------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLRGK-----SVLII-TVADIMSAMKDTFSN-------------SE--------- 150 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhcCC-----eEEEE-EHHHHHHHHHHHHhh-------------cc---------
Confidence 4688999999999975 3555555554322 45555 433443322211100 00
Q ss_pred hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHH-HHHHHHHHCCC-CCcEEEEeecCchhH
Q 007879 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA-EIHELVRLCPK-RRQTMLFSATLTEDV 316 (586)
Q Consensus 243 ~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~-~i~~i~~~~~~-~~q~i~~SAT~~~~~ 316 (586)
.+...++.. +.++++|||||++......+.. .+..+++.... ...+|+.|--...++
T Consensus 151 ---------~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 151 ---------TSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred ---------ccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 122233322 3467899999999876544443 45556655433 445555555444433
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.033 Score=55.52 Aligned_cols=44 Identities=27% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
+.++++.|+||+|||.. +..+...+...+. .|++ ++...|..++
T Consensus 183 ~~~Lll~G~~GtGKThL-a~aIa~~l~~~g~-----~V~y-~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFL-SNCIAKELLDRGK-----SVIY-RTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHH-HHHHHHHHHHCCC-----eEEE-EEHHHHHHHH
Confidence 57899999999999975 3455555554322 3555 4545564443
No 225
>PRK12377 putative replication protein; Provisional
Probab=96.56 E-value=0.026 Score=53.83 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
..++++.|++|+|||.. +..+.+.+...+. .| +.++...|..++
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~g~-----~v-~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAKGR-----SV-IVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHcCC-----Ce-EEEEHHHHHHHH
Confidence 35789999999999975 3555555554322 24 344555665544
No 226
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.53 E-value=0.21 Score=52.96 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=70.6
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCC-------ceEEecCCCCHHHHHHHHHHHh----cCCCcEEEec--Cccccc
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILFGLAAL-------KAAELHGNLTQAQRLEALELFR----KQHVDFLIAT--DVAARG 433 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~~-------~~~~l~~~~~~~~r~~~~~~f~----~g~~~vLvaT--~~~~~G 433 (586)
...++++++|++|++-...+.+.+...|+ +...+-..-+ -..+++.+. .|.-.+|+|. ..+++|
T Consensus 626 ~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEG 702 (821)
T KOG1133|consen 626 NAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEG 702 (821)
T ss_pred hhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccc
Confidence 33458999999999999999999886654 2222222222 344555554 3555676664 567899
Q ss_pred CCCCC--ccEEEEeCCCCC--------------------------------hhHHHHHhhhcccCCCcceEEEEec
Q 007879 434 LDIIG--VQTVINYACPRD--------------------------------LTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 434 ldi~~--v~~VI~~~~p~s--------------------------------~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
||+.+ ++.||..++|.. .....|.+|||-|.-+.-.+++++.
T Consensus 703 INF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 703 INFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 99976 788999998862 1122499999999665555555554
No 227
>PRK08727 hypothetical protein; Validated
Probab=96.53 E-value=0.014 Score=55.56 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=26.5
Q ss_pred cCceEEEEeCcccccCCC-cHHHHHHHHHHCCCCCcEEEEeecCchh
Q 007879 270 DDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
.+.++|||||+|.+..+. ....+..+++........+++|+..++.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 355789999999887543 3344555555543333335555554443
No 228
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.50 E-value=0.0097 Score=65.43 Aligned_cols=75 Identities=24% Similarity=0.215 Sum_probs=54.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
...-..+++-|.+++-. ...+++|.|..|||||.+ ++.-+..++.... ..+.++|+|+.|+..|..+.+.+....
T Consensus 191 ~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~-~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 191 QVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARGQ-AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred hccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCC-CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 33445799999999853 335688999999999987 3454445554322 234579999999999999988877644
No 229
>PRK08116 hypothetical protein; Validated
Probab=96.49 E-value=0.043 Score=53.28 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=27.0
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
..+++.|++|+|||..+ ..+.+.+..... .+++ ++...|...+
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~~~-----~v~~-~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEKGV-----PVIF-VNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHcCC-----eEEE-EEHHHHHHHH
Confidence 35899999999999763 556666655422 3444 4445554433
No 230
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.44 E-value=0.0057 Score=67.58 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
.+++-|.+++.. ....++|.|..|||||.+. +.-+.+++... +.++.++|+|+.|+..|..+.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL-~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899999865 3467889999999999884 44455555332 2344579999999999999988887764
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.37 E-value=0.017 Score=54.89 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=31.2
Q ss_pred CceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCchh
Q 007879 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 271 ~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
+.+++|||++|.+... .+...+..+++.+......++++++.++.
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 4568999999987543 34566777877766555567777776543
No 232
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.35 E-value=0.0019 Score=57.59 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=54.6
Q ss_pred EEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcC
Q 007879 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245 (586)
Q Consensus 166 lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (586)
++.|+-|-|||.+..+.+...+.... .+++|.+|+..-+..+++.+..-....+++....... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~-----~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK-----IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC-----ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccc
Confidence 57899999999875555443332221 3699999999988877776654333333322000000 000011122
Q ss_pred CCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 246 ~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
...|-+..|..+... ....+++|||||=.+. ...+..++.. ...++||.|..
T Consensus 73 ~~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 73 KQRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred cceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecc
Confidence 456777777665432 1234789999999873 4555555433 23578888875
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=96.34 E-value=0.016 Score=54.96 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=30.5
Q ss_pred cCceEEEEeCcccccCC-CcHHHHHHHHHHCCC-CCcEEEEeecCchhH
Q 007879 270 DDLAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~ 316 (586)
.+.++|||||+|.+... .+...+..+++.... ..+++++|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 45679999999988632 234455666655543 345677888776543
No 234
>PTZ00293 thymidine kinase; Provisional
Probab=96.33 E-value=0.017 Score=53.18 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
|+=-++.|||+||||.- +|-.+.+....++ +++++-|..
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~ag~-----kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYSEK-----KCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHcCC-----ceEEEEecc
Confidence 44457899999999975 5666666555443 488888854
No 235
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.29 E-value=0.03 Score=60.89 Aligned_cols=144 Identities=18% Similarity=0.229 Sum_probs=87.1
Q ss_pred CCCCcHHHHHHHHHHhcCC--CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 145 YSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~g~--~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.+....-|.+.+..++..+ -+++.|.-|=|||.+..+.+........ ..+++|.+|+.+-+..+.+.+.+-..+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~----~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG----SVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC----CceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 3334444444555566543 4679999999999887766633322221 347999999999999888887776666
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~ 302 (586)
.|.+-.+........ .........|=+.+|.... ..-++||||||=.+ ..+.+..++...
T Consensus 288 lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~~~~--- 347 (758)
T COG1444 288 LGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLLRRF--- 347 (758)
T ss_pred hCCccccccccccce--eeecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHHhhc---
Confidence 665432222211000 0000111234455554322 11568999999987 466677776554
Q ss_pred CcEEEEeecCc
Q 007879 303 RQTMLFSATLT 313 (586)
Q Consensus 303 ~q~i~~SAT~~ 313 (586)
+.++||.|+.
T Consensus 348 -~rv~~sTTIh 357 (758)
T COG1444 348 -PRVLFSTTIH 357 (758)
T ss_pred -CceEEEeeec
Confidence 3589999986
No 236
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.28 E-value=0.018 Score=61.17 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhc-----C----CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 150 PIQAACIPLALT-----G----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 150 ~~Q~~~i~~il~-----g----~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
|+|+-++-.++. | +.+++.-+=|-|||......++..++.. +..+..++++++++.-|..+++.+..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--GEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--CccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 678888777763 2 3578888999999975444444444332 2235679999999999999999888876
Q ss_pred hcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHH-HhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHL-RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l-~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
...+......... . .. .....|.....+.++..+ .......-.+..++|+||+|.+.+......+..-....
T Consensus 79 ~~~~~l~~~~~~~--~---~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r 151 (477)
T PF03354_consen 79 EASPELRKRKKPK--I---IK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR 151 (477)
T ss_pred HhChhhccchhhh--h---hh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC
Confidence 5532111000000 0 00 001122222212222111 12222333467899999999987644334343333332
Q ss_pred CCCCcEEEE
Q 007879 300 PKRRQTMLF 308 (586)
Q Consensus 300 ~~~~q~i~~ 308 (586)
++++++.+
T Consensus 152 -~~pl~~~I 159 (477)
T PF03354_consen 152 -PNPLIIII 159 (477)
T ss_pred -CCceEEEE
Confidence 34444444
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.27 E-value=0.051 Score=48.14 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=26.6
Q ss_pred cCceEEEEeCcccccCCC----------cHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 270 DDLAVLILDEADRLLELG----------FSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~----------~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
....++|+||.+.+.... ....+..+.........+++++...+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 467899999999875321 23555566655554444455555543
No 238
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.24 E-value=0.58 Score=58.00 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 007879 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~ 224 (586)
.+++-|..++..++.. +-.++.|+.|+|||.+ +-.+..+.... +.+|++++||...+.++.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~~----G~~V~~lAPTgrAA~~L~e~~g~------ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASEQ----GYEIQIITAGSLSAQELRQKIPR------ 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHhcc------
Confidence 5889999999999886 4567999999999975 33333343322 33799999999887765544221
Q ss_pred ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC-CCCC
Q 007879 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRR 303 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~ 303 (586)
.... .......+.. ..-..|..+|+ .. ...+..-++||||||-.+.. ..+..++... +.+.
T Consensus 497 -~A~T------i~~~l~~l~~--~~~~~tv~~fl---~~--~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 497 -LAST------FITWVKNLFN--DDQDHTVQGLL---DK--SSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNS 558 (1960)
T ss_pred -hhhh------HHHHHHhhcc--cccchhHHHhh---cc--cCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCC
Confidence 1100 0000000111 11122333333 11 23356778999999997753 3445555544 4567
Q ss_pred cEEEEeec
Q 007879 304 QTMLFSAT 311 (586)
Q Consensus 304 q~i~~SAT 311 (586)
++|++.=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877554
No 239
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.19 E-value=0.04 Score=57.71 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++.+ ..+...+...+... .
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~---~~~~v~yv~~-~~f~~~~~~~l~~~----~------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNF---SDLKVSYMSG-DEFARKAVDILQKT----H------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhC---CCCeEEEEEH-HHHHHHHHHHHHHh----h------------------
Confidence 4588999999999964 233334333222 1335666554 55655554443320 0
Q ss_pred hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCchh
Q 007879 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 243 ~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
+.+...... +.+.++|||||+|.+... .....+..+++.+......+++|+..+|.
T Consensus 195 ------------~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~ 251 (450)
T PRK14087 195 ------------KEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPE 251 (450)
T ss_pred ------------hHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 011111111 346679999999988643 23455666666554433345555554443
No 240
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.18 E-value=0.024 Score=53.69 Aligned_cols=42 Identities=10% Similarity=0.216 Sum_probs=24.4
Q ss_pred ceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 272 LAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 272 ~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
..+|||||+|.+... .....+..+++........+++|++..
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 358999999988643 234455555544322223456666644
No 241
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.0044 Score=64.00 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=56.4
Q ss_pred EEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH-HHhhcCCceEEEEeCCCChHHH----HH
Q 007879 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE-KIAQFTDIRCCLVVGGLSTKMQ----ET 241 (586)
Q Consensus 167 v~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~-~l~~~~~~~~~~~~~~~~~~~~----~~ 241 (586)
..++||||||++. ..++-+++..+-+ ..|+.|...........-+. .++...-+.-.+.+++....-. ..
T Consensus 2 f~matgsgkt~~m-a~lil~~y~kgyr----~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs 76 (812)
T COG3421 2 FEMATGSGKTLVM-AGLILECYKKGYR----NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS 76 (812)
T ss_pred cccccCCChhhHH-HHHHHHHHHhchh----hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC
Confidence 5689999999874 4444444444322 36777776555443322111 1100000000111111111000 01
Q ss_pred HhcCCCcEEEECcHHHHHHHHhcC--CcC---ccCce-EEEEeCccccc
Q 007879 242 ALRSMPDIVVATPGRMIDHLRNSM--SVD---LDDLA-VLILDEADRLL 284 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~~~l~~~~--~~~---l~~~~-~lViDEah~l~ 284 (586)
.......|+++|.+.|...+.+.. .+. +.+.. +++-||||++-
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 123456799999999977665422 222 33333 56789999985
No 242
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.07 E-value=0.035 Score=52.82 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=26.1
Q ss_pred ceEEEEeCcccccCC-CcHHHHHHHHHHCCC-CCcEEEEeecCch
Q 007879 272 LAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTE 314 (586)
Q Consensus 272 ~~~lViDEah~l~~~-~~~~~i~~i~~~~~~-~~q~i~~SAT~~~ 314 (586)
+++|||||+|.+... .+...+..+++.+.. ....+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999998643 345556666655433 2224556666544
No 243
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.06 E-value=0.031 Score=58.96 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=55.9
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
+.+++.||+|+|||.. +-.+.+.+.... ++.+++++ +...+..++...+.. +
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~---~~~~v~yi-~~~~~~~~~~~~~~~-----~------------------ 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKN---PNAKVVYV-TSEKFTNDFVNALRN-----N------------------ 200 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhC---CCCeEEEE-EHHHHHHHHHHHHHc-----C------------------
Confidence 4588999999999975 344444444332 12346665 445554443333221 0
Q ss_pred hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-cHHHHHHHHHHCC-CCCcEEEEeecCchh
Q 007879 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTED 315 (586)
Q Consensus 243 ~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~ 315 (586)
+...+... +.+.++|||||+|.+.... ....+..+++.+. ...+ ++++++.++.
T Consensus 201 ----------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~-iiits~~~p~ 256 (450)
T PRK00149 201 ----------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ-IVLTSDRPPK 256 (450)
T ss_pred ----------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc-EEEECCCCHH
Confidence 11122221 2356799999999886532 2334444444433 2344 5555555443
No 244
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.04 E-value=0.027 Score=58.68 Aligned_cols=89 Identities=24% Similarity=0.253 Sum_probs=59.3
Q ss_pred CCCHH-HHHHHHHcCCCCCcH----HHHHHHHHHhc--CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCC-CCCeEEEEE
Q 007879 131 NLSRP-LLRACEALGYSKPTP----IQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLIL 202 (586)
Q Consensus 131 ~l~~~-l~~~l~~~~~~~~~~----~Q~~~i~~il~--g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~vlil 202 (586)
++..+ |+..|...--.+++. +|.+-=..+.. ++-++|+|..|||||.++ ++=+..++.+-.+ .....|||+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiA-LHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIA-LHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHH-HHHHHHHHhccccccccCceEEE
Confidence 44444 455566544444443 56555555555 455779999999999875 6655666654332 233349999
Q ss_pred cCcHHHHHHHHHHHHHHh
Q 007879 203 TPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~ 220 (586)
.|.+.+..-+.+++-+|+
T Consensus 267 ~PN~vFleYis~VLPeLG 284 (747)
T COG3973 267 GPNRVFLEYISRVLPELG 284 (747)
T ss_pred cCcHHHHHHHHHhchhhc
Confidence 999999998888888764
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.043 Score=52.70 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=34.0
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
++.++++.|++|+|||..+ .++.+.+...+ .-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~g------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLKAG------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHcC------CeEEEEEHHHHHHHHHHHHh
Confidence 6789999999999999863 55555555322 23555677788776544433
No 246
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.98 E-value=0.013 Score=65.52 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
..|++-|.+++.. ....++|.|..|||||.+. ..-+.+++... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL-THRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999865 3467899999999999874 44445555432 23455799999999999999998887754
No 247
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.94 E-value=0.047 Score=56.76 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+++.|++|+|||.. +..+.+.+.... ++.+++++.
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~~---~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILENN---PNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHhC---CCCcEEEEE
Confidence 4578999999999975 344555554432 123566663
No 248
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.91 E-value=0.017 Score=64.30 Aligned_cols=70 Identities=20% Similarity=0.130 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
|++-|.+++.. ...+++|.|..|||||.+ ++.-+.+++... +..+.++|+|+.|+..|.++.+.+.....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899998864 356899999999999987 455555555422 22345799999999999999888876543
No 249
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.88 E-value=0.023 Score=54.22 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=33.3
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 192 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~ 192 (586)
+....+|+++++++-+.+.+.. ...=+||.||||||||.+ +..++.++.....
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 3445667777776655442211 112357999999999987 5777777665443
No 250
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.19 Score=52.79 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=33.8
Q ss_pred CcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCch-hHHHHHHH
Q 007879 253 TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE-DVDELIKL 322 (586)
Q Consensus 253 Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~~~~~~~ 322 (586)
++..+...+.. +.++++||||.+-..... .....+..+... .....+++++++... ++...+..
T Consensus 415 d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~ 480 (559)
T PRK12727 415 SAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRR 480 (559)
T ss_pred cHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHH
Confidence 34445555543 346789999999765321 112223333222 233457788888753 44444443
No 251
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.82 E-value=0.14 Score=53.16 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred ceEEEEeCcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHH
Q 007879 272 LAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 272 ~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
.++||||.+-++.. ......+..+.....+..-++.++||...+....+..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 37899999966542 2234455666666666666788888887665555544
No 252
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.81 E-value=0.019 Score=64.22 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.|++-|.+++... ...++|.|..|||||.+. ..-+.+++... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVL-VHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHH-HHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999998643 457899999999999874 44444555422 23455799999999999999998887654
No 253
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.81 E-value=0.23 Score=53.37 Aligned_cols=152 Identities=12% Similarity=0.163 Sum_probs=82.1
Q ss_pred CCCCcHHHHHHHHHHhc---CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 145 YSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~---g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
...|.|.=.+-|..++. .+-.++.+|=|.|||.+..+.+. .+... .+.+++|++|...-+.++.+.++....
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF----LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh----cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 33455655555555544 46678899999999987443333 33321 134799999999999998888777765
Q ss_pred cCC--------ceEEEEeCCCCh-HH-HHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHH
Q 007879 222 FTD--------IRCCLVVGGLST-KM-QETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290 (586)
Q Consensus 222 ~~~--------~~~~~~~~~~~~-~~-~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~ 290 (586)
..+ .++....|+... .- ...... ++..|.+.+- ......-..++++|||||..+.. .
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar--------s~~s~RG~~~DLLIVDEAAfI~~----~ 309 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS--------SPNAARGQNPDLVIVDEAAFVNP----G 309 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc--------cCCCcCCCCCCEEEEECcccCCH----H
Confidence 221 111112221100 00 000000 1123333221 11122223568999999998865 3
Q ss_pred HHHHHHHHCC-CCCcEEEEeecCc
Q 007879 291 EIHELVRLCP-KRRQTMLFSATLT 313 (586)
Q Consensus 291 ~i~~i~~~~~-~~~q~i~~SAT~~ 313 (586)
.+..++-.+. ...+++++|.+-.
T Consensus 310 ~l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 310 ALLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHHHHHHHHccCCCceEEEeCCCC
Confidence 3333433333 4566777777753
No 254
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.80 E-value=0.078 Score=48.40 Aligned_cols=48 Identities=27% Similarity=0.104 Sum_probs=30.0
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
+++.|++|+|||... +-++......+ .+++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~-~~~~~~~~~~g-----~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFA-LQFLYAGLARG-----EPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHHHCC-----CcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999764 44333333332 24777765 34556666666554
No 255
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.74 E-value=0.021 Score=55.76 Aligned_cols=64 Identities=28% Similarity=0.278 Sum_probs=47.5
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCC-CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 007879 141 EALGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (586)
Q Consensus 141 ~~~~~~~~~~~Q~~~i~~il~g~-~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q 211 (586)
.-..|..+++-|...+-.+..++ ++|++|.||||||+. +-++....... -+++.+=-|.+|-.+
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~~~-----eRvItiEDtaELql~ 215 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFIDSD-----ERVITIEDTAELQLA 215 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCCCc-----ccEEEEeehhhhccC
Confidence 33457789999999998888876 999999999999974 44444333222 268999998888443
No 256
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.69 E-value=0.067 Score=63.40 Aligned_cols=64 Identities=27% Similarity=0.249 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
.+++-|.+++..++.+ +-+++.|..|+|||.+. -.++..+..-. ...+.+++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLP-ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHh-hccCceEEEEechHHHHHHH
Confidence 6999999999999975 66789999999999762 22222221100 01234688999998887665
No 257
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.09 Score=57.34 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=24.2
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
..++++||||+|.|....+. .+.+++..-+.... ++|++|-
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~-FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVK-FILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeE-EEEEECC
Confidence 46889999999998754333 33334444444433 4444443
No 258
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.65 E-value=0.1 Score=58.54 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=25.0
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...++++||||+|.|.... ...+.++++..+....+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578999999999997543 334445555545544444443
No 259
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.65 E-value=0.091 Score=54.98 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=23.9
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~---~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNE---PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhC---CCCeEEEEEH
Confidence 4688999999999975 344444444322 1235777654
No 260
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.65 E-value=0.082 Score=63.53 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
.+++.|..++..++.+ +-++|.|..|+|||.+ +-.++..+.... ...+.+|+.++||-..|.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~-~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP-ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh-cccCceEEEECCcHHHHHHH
Confidence 5899999999999986 4567999999999975 233333332111 11234689999998887654
No 261
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.64 E-value=0.043 Score=53.63 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=55.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEe--CCCCh
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV--GGLST 236 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~--~~~~~ 236 (586)
+..|.-+++.|++|+|||... +.++..+.... +.+|+++.--- -..++...+..... ++.+.... .....
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~-~~~~~~~~~~~----g~~vl~iS~E~-~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~ 98 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFL-REYALDLITQH----GVRVGTISLEE-PVVRTARRLLGQYA--GKRLHLPDTVFIYTL 98 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHH-HHHHHHHHHhc----CceEEEEEccc-CHHHHHHHHHHHHh--CCCcccCCccccccH
Confidence 445677889999999999753 33333332221 22577775422 23344444433211 22111100 01111
Q ss_pred HHHH---HHhcCCCcEEEE------CcHHHHHHHHhcCCcCccCceEEEEeCcccccC
Q 007879 237 KMQE---TALRSMPDIVVA------TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (586)
Q Consensus 237 ~~~~---~~~~~~~~Ili~------Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 285 (586)
.... ..+.....+.+. |+..+...+... ..-..+++||||-.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~--~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 99 EEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM--AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH--HhcCCceEEEECCHHHHhc
Confidence 1111 112222223221 445555555431 1123678999999998764
No 262
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.094 Score=52.02 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCCCcHHHHHHHHHHhc----CC---CeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 145 YSKPTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~----g~---~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
+..++|+|..++..+.. |+ -.++.||.|.||+..+ ..+...++-.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~ 53 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLAS 53 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCC
Confidence 35688999999877764 33 4789999999999753 5555565543
No 263
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.24 Score=49.82 Aligned_cols=126 Identities=20% Similarity=0.210 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE-c-CcHHH-HHHHHHHHHHHhhcCCceEEEEeCCCChHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-T-PTREL-AVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil-~-Ptr~L-a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (586)
++.++++||+|+|||.+. .-+...+...+. +|.++ + |.|.- +.|+.. ++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~-akLA~~l~~~g~-----~V~lItaDtyR~gAveQLk~----yae~lgvpv~---------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTL-VKLGWQLLKQNR-----TVGFITTDTFRSGAVEQFQG----YADKLDVELI---------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHcCC-----eEEEEeCCccCccHHHHHHH----HhhcCCCCEE----------
Confidence 456779999999999763 333333333221 34333 3 23332 234433 3333343322
Q ss_pred HHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCch-hH
Q 007879 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTE-DV 316 (586)
Q Consensus 239 ~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~~ 316 (586)
+..+|..|...+... .....+++|+||=+-+... ......+..+.....+..-++.+|||... ++
T Consensus 266 -----------~~~dp~dL~~al~~l--~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~ 332 (407)
T PRK12726 266 -----------VATSPAELEEAVQYM--TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADV 332 (407)
T ss_pred -----------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHH
Confidence 123455554444331 1123567888887766532 11233344444444333334566775543 33
Q ss_pred HHHH
Q 007879 317 DELI 320 (586)
Q Consensus 317 ~~~~ 320 (586)
...+
T Consensus 333 ~~i~ 336 (407)
T PRK12726 333 MTIL 336 (407)
T ss_pred HHHH
Confidence 3333
No 264
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.56 E-value=0.24 Score=47.88 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=68.7
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC-c-H-HHHHHHHHHHHHHhhcCCceEEEEeCCCChH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-R-ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P-t-r-~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (586)
.+..+++.+++|+|||..+..-+ ..+.... .++.++.. + | ..+.|+...... .++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~-~~l~~~~-----~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~-------- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA-WQFHGKK-----KTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA-------- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH-HHHHHcC-----CeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe--------
Confidence 34677899999999998643332 2222211 13443333 2 2 344455433332 2332211
Q ss_pred HHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCch-h
Q 007879 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTE-D 315 (586)
Q Consensus 238 ~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~-~ 315 (586)
..+|..+...+... .....+++||||-+-+... ......+..++....+..-.+.+|||... +
T Consensus 136 -------------~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 136 -------------VRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred -------------cCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 12455555444321 1123678999999987642 22344455555554444446779998754 5
Q ss_pred HHHHHHHh
Q 007879 316 VDELIKLS 323 (586)
Q Consensus 316 ~~~~~~~~ 323 (586)
....+..+
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 55665554
No 265
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.48 E-value=0.077 Score=56.85 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=28.8
Q ss_pred cCceEEEEeCcccccCCC-cHHHHHHHHHHCCC-CCcEEEEeecCchhH
Q 007879 270 DDLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~-~~q~i~~SAT~~~~~ 316 (586)
.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..+..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 457899999999987543 34556666666544 355555444444333
No 266
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.47 E-value=0.05 Score=58.58 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHH-HHHHHHhhcC
Q 007879 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQFT 223 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~-~~~~~l~~~~ 223 (586)
..+|||.+.+..+-.. +.+.++.++-+|||.+. +-++-....... ..+|++.||..+|..+. ..+..+....
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~~P----~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQDP----GPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEeCC----CCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 4789999999888664 57889999999999864 444444333333 25999999999999765 4555554433
Q ss_pred CceEEEEeC----CCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 224 DIRCCLVVG----GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 224 ~~~~~~~~~----~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
+.--..+.. ..........+. +..+.++.. .+...+.-..+.++++||.|.+.
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga-------~S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGA-------NSPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC-CCEEEEEeC-------CCCcccccCCcCEEEEechhhcc
Confidence 211111111 111111122222 334444331 11112334568899999999985
No 267
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.46 E-value=0.27 Score=43.70 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
..++++|||+||.|... -...+.+.+..-|....+|++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 57899999999998643 34555556666555555555554443
No 268
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.45 E-value=0.063 Score=55.18 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHhcCCCeEEEcCCCchhHHHh
Q 007879 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~ 179 (586)
+-.....++..+..++++++.|++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34455666777778999999999999999764
No 269
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.098 Score=57.55 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC-cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P-tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
++-+.+.||||+|||++...-+.......+. .+|.++.- +--.+ ..+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~------------ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA----DQLALLTTDSFRIG--ALEQLRIYGRILGVPVH------------ 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----CeEEEecCcccchH--HHHHHHHHHHhCCCCcc------------
Confidence 3446699999999998643222221112211 13444333 22111 12334444444444332
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCchh
Q 007879 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
++.+|..+...+.. +.+.++|+||=+-+.... .....+..+.....+...++++|||....
T Consensus 247 ---------~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~ 308 (767)
T PRK14723 247 ---------AVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD 308 (767)
T ss_pred ---------ccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH
Confidence 22355555555543 235567888877765422 12333333333333444567777776533
No 270
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.43 E-value=0.11 Score=54.39 Aligned_cols=48 Identities=10% Similarity=0.208 Sum_probs=27.9
Q ss_pred cCceEEEEeCcccccCCC-cHHHHHHHHHHCC-CCCcEEEEeecCchhHH
Q 007879 270 DDLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTEDVD 317 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~~ 317 (586)
.+.++|+|||+|.+.... ....+..+++.+. ...++|+.|-+.+..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 356799999999986543 3445555555432 34454444444444443
No 271
>PRK09183 transposase/IS protein; Provisional
Probab=95.40 E-value=0.11 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.7
Q ss_pred HhcCCCeEEEcCCCchhHHHh
Q 007879 159 ALTGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~ 179 (586)
+..+.++++.||+|+|||..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 446789999999999999754
No 272
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.35 E-value=0.051 Score=56.35 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=77.9
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH-HHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~-La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (586)
.++.|..|||||.+..+-++..++..+ ++.+++|+-|+.. |..-++..+.......++....-....+. .. .+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~---~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~ 77 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK---KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KI 77 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC---CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-Ee
Confidence 578999999999888777777776641 2347999999887 55556666665544444432211111100 00 01
Q ss_pred cC-CCcEEEECc-HHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCC--CCCcEEEEeecCchhHHHH
Q 007879 244 RS-MPDIVVATP-GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDEL 319 (586)
Q Consensus 244 ~~-~~~Ili~Tp-~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~--~~~q~i~~SAT~~~~~~~~ 319 (586)
.. +..|++..- ...-. + .....+.++.+|||..+... .+..++..+. .....+++|.||.....-+
T Consensus 78 ~~~g~~i~f~g~~d~~~~-i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~ 147 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK-L-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWV 147 (396)
T ss_pred cCCCeEEEeecccCChhH-h-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHH
Confidence 12 344555442 11111 1 11234689999999998533 3333333332 2223588898986543333
Q ss_pred HHHh
Q 007879 320 IKLS 323 (586)
Q Consensus 320 ~~~~ 323 (586)
...+
T Consensus 148 ~~~f 151 (396)
T TIGR01547 148 KKRF 151 (396)
T ss_pred HHHH
Confidence 3333
No 273
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.35 E-value=0.088 Score=49.86 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=26.0
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCCCCCc-EEEEeecCch
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ-TMLFSATLTE 314 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q-~i~~SAT~~~ 314 (586)
..++|||||+|.+... ....+..+++....... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999987543 24445555544433333 4777777543
No 274
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.34 E-value=0.16 Score=55.20 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=24.0
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...++++||||+|.|.... ...+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876432 233444444444455455444
No 275
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.04 Score=57.27 Aligned_cols=16 Identities=25% Similarity=0.065 Sum_probs=13.8
Q ss_pred CeEEEcCCCchhHHHh
Q 007879 164 DICGSAITGSGKTAAF 179 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~ 179 (586)
.+|++||.|+|||.++
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3699999999999864
No 276
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.31 E-value=0.13 Score=49.81 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.6
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999999753
No 277
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.30 E-value=0.056 Score=50.78 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=30.0
Q ss_pred ccCceEEEEeCcccccCCC-cHHHHHHHHHHCC-CCCcEEEEeecCchhH
Q 007879 269 LDDLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTEDV 316 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~-~~~q~i~~SAT~~~~~ 316 (586)
+...++|+||..|.+.... ....+..+++.+. ...++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 3467899999999987542 3455566655543 3456666665665543
No 278
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.22 Score=50.49 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=23.1
Q ss_pred HHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 156 IPLALTG--RDICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 156 i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
.|.+..+ .++++.|+||+|||.+ .-.++..+...
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 3444443 3689999999999987 45556655543
No 279
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.29 E-value=0.084 Score=56.69 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=23.2
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...++++||||+|.|....+. .+.+.++.-+....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 356889999999998654332 2333333333444444443
No 280
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.28 E-value=0.021 Score=60.92 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=94.5
Q ss_pred CCCCcHHHHHHHHHHhc--------CC--CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 007879 145 YSKPTPIQAACIPLALT--------GR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~--------g~--~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~ 214 (586)
-..++..|.+++-.+.+ |. ..|+....|-||-.+..-.+++..+++.+ ++|.+.-...|-....+
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK-----rAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK-----RALWFSVSSDLKFDAER 336 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc-----eeEEEEeccccccchhh
Confidence 44678899998876654 21 35676666666654444556677666544 68998888888666555
Q ss_pred HHHHHhhcCCceEEEEeCCCChHHHHHHhcC--CCcEEEECcHHHHHHHHhcCCcC------c-----cC-ceEEEEeCc
Q 007879 215 MIEKIAQFTDIRCCLVVGGLSTKMQETALRS--MPDIVVATPGRMIDHLRNSMSVD------L-----DD-LAVLILDEA 280 (586)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ili~Tp~~l~~~l~~~~~~~------l-----~~-~~~lViDEa 280 (586)
.+..+. .+++.+..+.-- ........... .-.|+++|+-.|+-......... | .. =.+||+|||
T Consensus 337 DL~Dig-A~~I~V~alnK~-KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDEC 414 (1300)
T KOG1513|consen 337 DLRDIG-ATGIAVHALNKF-KYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDEC 414 (1300)
T ss_pred chhhcC-CCCccceehhhc-ccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhh
Confidence 565542 345555433211 00000000011 12699999988865443211100 1 11 248999999
Q ss_pred ccccCC---------CcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 281 DRLLEL---------GFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 281 h~l~~~---------~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
|+-.+. .....+..+.+.+|. .+++.-|||-
T Consensus 415 HkAKNL~p~~~~k~TKtG~tVLdLQk~LP~-ARVVYASATG 454 (1300)
T KOG1513|consen 415 HKAKNLVPTAGAKSTKTGKTVLDLQKKLPN-ARVVYASATG 454 (1300)
T ss_pred hhhcccccccCCCcCcccHhHHHHHHhCCC-ceEEEeeccC
Confidence 986541 145677788888875 5588899985
No 281
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.27 E-value=0.21 Score=51.37 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
|.-+.+.||||+|||++...-+-..+..... ..-.++.+.+.-.+. .+.+..++...++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~---~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~------------ 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGA---DKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRS------------ 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC---CeEEEEecCCcchhH--HHHHHHHHHHcCCceec------------
Confidence 4557799999999998633222212222111 112455555533322 22234444444544322
Q ss_pred HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchh-HHHH
Q 007879 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTED-VDEL 319 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~-~~~~ 319 (586)
+.++..+...+.. +.+.++++||.+-+... ......+..+.........++++|||.... +.+.
T Consensus 254 ---------v~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 254 ---------IKDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---------CCCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 2233333333322 45667899998643321 112233333322222334568899997654 4444
Q ss_pred HHHh
Q 007879 320 IKLS 323 (586)
Q Consensus 320 ~~~~ 323 (586)
+..+
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 4443
No 282
>PLN03025 replication factor C subunit; Provisional
Probab=95.19 E-value=0.19 Score=50.27 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=25.1
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
...+++||||+|.|.... ...+..++...+.... ++++++..
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~~ 139 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNTS 139 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCCc
Confidence 357899999999986432 3444455554444443 44555433
No 283
>CHL00181 cbbX CbbX; Provisional
Probab=95.18 E-value=0.24 Score=48.54 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
|.++++.||+|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446899999999999864
No 284
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.17 E-value=0.33 Score=47.22 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=32.2
Q ss_pred cCceEEEEeCcccccC-CCcHHHHHHHHHHCC------CCCcEEEEeecCchhHHHHHHH
Q 007879 270 DDLAVLILDEADRLLE-LGFSAEIHELVRLCP------KRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 270 ~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~------~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
..+++||||=+-++.. ......+..+.+..+ ...-++.++||...+....+..
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 212 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV 212 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH
Confidence 4578899998877642 223445555555544 4455788899876554444433
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.34 Score=49.54 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=31.0
Q ss_pred cCceEEEEeCccccc-CCCcHHHHHHHHHHCC---CCCcEEEEeecCch-hHHHHHHHh
Q 007879 270 DDLAVLILDEADRLL-ELGFSAEIHELVRLCP---KRRQTMLFSATLTE-DVDELIKLS 323 (586)
Q Consensus 270 ~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~---~~~q~i~~SAT~~~-~~~~~~~~~ 323 (586)
..+++||||=+-+.. +......+..++.... +...++++|||... ++...+..+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 357889999776653 2223344444454432 22356888999887 444444443
No 286
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.13 Score=46.16 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=55.3
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (586)
=.++++||.||||.. +|-.+.++...+. ++++..|...- ..+.....-+-|.+
T Consensus 6 l~~i~gpM~SGKT~e-Ll~r~~~~~~~g~-----~v~vfkp~iD~-------------R~~~~~V~Sr~G~~-------- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEE-LLRRARRYKEAGM-----KVLVFKPAIDT-------------RYGVGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEEccCcCcchHH-HHHHHHHHHHcCC-----eEEEEeccccc-------------ccccceeeeccCCc--------
Confidence 357999999999986 5555555555444 58888885322 11222222222221
Q ss_pred cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 244 ~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
...++|-++..++..+..... ...+++|.||||+-+.
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQFFD 95 (201)
T ss_pred --ccceecCChHHHHHHHHhccc--CCCcCEEEEehhHhCC
Confidence 235777788888888776321 1237899999999754
No 287
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.11 E-value=0.23 Score=51.11 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=64.8
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC--cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP--TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P--tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
-++++|++|+|||++. .-+...+...+. +|+++.. .|..|.+ +++.++...++.+.....+..+
T Consensus 102 vi~lvG~~GvGKTTta-aKLA~~l~~~G~-----kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp----- 167 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC-TKLAYYYQRKGF-----KPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDP----- 167 (429)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHCCC-----CEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCH-----
Confidence 3569999999999763 333333332221 3555443 3444433 3444444445554333322221
Q ss_pred HhcCCCcEEEECcHHH-HHHHHhcCCcCccCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCchhHHHH
Q 007879 242 ALRSMPDIVVATPGRM-IDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l-~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~ 319 (586)
..+ ...+.. ..-..+++||||=+-++... .....+..+.....+..-+++++||...+....
T Consensus 168 -------------~~i~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 168 -------------VKIASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred -------------HHHHHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 111 111111 00135678888888765431 233445555555555555778888877665555
Q ss_pred HHHh
Q 007879 320 IKLS 323 (586)
Q Consensus 320 ~~~~ 323 (586)
+..+
T Consensus 232 a~~F 235 (429)
T TIGR01425 232 AKAF 235 (429)
T ss_pred HHHH
Confidence 5443
No 288
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=0.16 Score=51.35 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=25.2
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...+.++||||||.|.... ...+.+.+..-+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 4578899999999986433 334555555544444445554
No 289
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.08 E-value=0.05 Score=64.49 Aligned_cols=125 Identities=24% Similarity=0.204 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
++|+-|.++|. ..+++++|.|..|||||.+..--++..+..+ ....++|+|+-|+..|..+.+.+.......- .
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~-~ 74 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---VDIDRLLVVTFTNAAAREMKERIEEALQKAL-Q 74 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH-h
Confidence 36889999997 3688999999999999988655566555433 2234699999999999888777765432100 0
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCcc-CceEEEEeCccc
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLD-DLAVLILDEADR 282 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~-~~~~lViDEah~ 282 (586)
.......-...+..-...-|+|-..+...+-+.....+. +..+=|.||...
T Consensus 75 -----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 000001111222333456688877775444332111110 123455777664
No 290
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.095 Score=56.40 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=24.6
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
..++++||||+|+|....+ ..+.+++..-+.... ++|++|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~-FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVK-FLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcE-EEEEECC
Confidence 4678999999998865433 334445554444443 4444453
No 291
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.05 E-value=0.035 Score=47.26 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.5
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999975
No 292
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.03 E-value=0.074 Score=52.74 Aligned_cols=58 Identities=33% Similarity=0.320 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 148 PTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 148 ~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
+++.|...+..+.. +.+++++|+||||||.. +-.++..+...+. ..+++++=.+.+|.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~---~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAP---EDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCC---CceEEEecCCcccc
Confidence 66778777665554 67899999999999974 3445554432221 23678888788873
No 293
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.02 E-value=0.049 Score=61.21 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
..|++-|.+++.+ ....++|.|..|||||.+. +.-+.+++... +..+-++|+++-|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l-~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVL-THRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHH-HHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999975 3467899999999999874 44444444332 23345799999999999999888887643
No 294
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.02 E-value=0.15 Score=56.41 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=23.6
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCC-CCCcEEEEeec
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCP-KRRQTMLFSAT 311 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~-~~~q~i~~SAT 311 (586)
..+.+|||||+|.+...+ ...+..+++... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346689999999988642 344444544322 23444444444
No 295
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.055 Score=57.49 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=24.2
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
..++++||||+|.|....+ ..+.+.+..-|....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4688999999999875433 33344555544454444443
No 296
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.98 E-value=0.074 Score=48.81 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=25.0
Q ss_pred CcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEE
Q 007879 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 266 ~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i 306 (586)
.++....++||+||||.|-.. -...++..+.......++.
T Consensus 108 ~lp~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 108 TLPPGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred cCCCCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhh
Confidence 344567889999999998653 3444555555544444433
No 297
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.97 E-value=0.13 Score=51.46 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=25.9
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
..++|||||+|.+........+..++...+...++|+ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE-EcC
Confidence 4678999999998433344556666666665555554 444
No 298
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.95 E-value=0.064 Score=48.48 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=75.7
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
....+++..++|.|||.+++--++.++-. +.+|+|+.=.+--.. +.....+....++.....-.+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~------G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~-- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH------GKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWET-- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC------CCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccC--
Confidence 45678899999999998865555544432 235777765442210 11112221212333222111111000
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCc--HHHHHHHHHHCCCCCcEEEEeecCchhHHH
Q 007879 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~ 318 (586)
....--+......+..... .+.-..+++||+||+-..++.++ ...+..++...|...-+|+..-.+|+.+.+
T Consensus 91 ----~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 ----QDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ----CCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000011112222222 12335789999999999888775 456777777777766666666667777766
Q ss_pred HHH
Q 007879 319 LIK 321 (586)
Q Consensus 319 ~~~ 321 (586)
.+.
T Consensus 165 ~AD 167 (191)
T PRK05986 165 AAD 167 (191)
T ss_pred hCc
Confidence 554
No 299
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.21 Score=52.56 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.1
Q ss_pred CCeEEEcCCCchhHHHhh
Q 007879 163 RDICGSAITGSGKTAAFA 180 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~ 180 (586)
+..|++||.|+|||.++.
T Consensus 36 ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 36 QSILLVGASGVGKTTCAR 53 (491)
T ss_pred ceEEEECCCCccHHHHHH
Confidence 468999999999998653
No 300
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.94 E-value=0.33 Score=42.72 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=41.0
Q ss_pred ccCceEEEEeCcccccCCCc--HHHHHHHHHHCCCCCcEEEEeecCchhHHHHHH
Q 007879 269 LDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (586)
...+++||+||+=..++.++ ...+..+++..|...-+|+.+-.+|+.+.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877664 566777888888777777777778877766553
No 301
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.91 E-value=0.38 Score=47.48 Aligned_cols=58 Identities=34% Similarity=0.365 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHh-cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 148 PTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 148 ~~~~Q~~~i~~il-~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
+++-|...+..+. .+++++++|+||||||.. +-.++..+...+ +..+++++=.+.++.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~---~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND---PTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC---CCceEEEECCchhhc
Confidence 5566666665544 467899999999999974 344444443221 133688888888873
No 302
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.84 E-value=0.19 Score=49.67 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
++++++.|++|+|||... ..+.+.+..
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 467899999999999753 444455543
No 303
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.83 E-value=0.19 Score=50.83 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=24.4
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
...++|||||+|.+... ....+..++...+....+| ++++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~I-l~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFI-IATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEE-EEeC
Confidence 45679999999987542 2344555555555555444 4444
No 304
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.79 E-value=0.35 Score=50.71 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
|+-+++.||||+|||++.
T Consensus 256 g~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTT 273 (484)
T ss_pred CcEEEEECCCCccHHHHH
Confidence 344669999999999863
No 305
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.77 E-value=0.19 Score=51.05 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=61.4
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCC-----eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPA-----IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~-----~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (586)
-.|+.||.|+||+.. ...+...++........ +..+-+++.-..|.+ +.. ...+++... ........
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~----i~~-~~HPDl~~i--~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR----IAA-GAHGGLLTL--ERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH----HHc-cCCCCeEEE--eccccccc
Confidence 578999999999976 35666666654321111 223444554333333 222 122333322 21100000
Q ss_pred HHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 239 ~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
. +....|.|-..-.+...+.. ........++||||+|.|... -...+.+.+..-|....+|++|..
T Consensus 115 --~--~~~~~I~VdqiR~l~~~~~~--~~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 115 --K--RLRTVITVDEVRELISFFGL--TAAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred --c--cccccccHHHHHHHHHHhCc--CcccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 0 00122333222222222222 122457889999999988532 233444455544444444444444
No 306
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.33 Score=52.36 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=25.1
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCch
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 314 (586)
....+++||||+|.|....+ ..+.+.+..-|...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChH
Confidence 35788999999999875432 23334444434444334433 4433
No 307
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.73 E-value=0.21 Score=52.90 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.6
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
+.+|++||.|+|||.++
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36889999999999864
No 308
>PF13173 AAA_14: AAA domain
Probab=94.72 E-value=0.34 Score=41.08 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=25.5
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
.-.+|+|||+|.+.+ +...+..+.... .+.+ +++|++..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~-ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIK-IILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCce-EEEEccch
Confidence 445899999999875 566677776654 3344 44444433
No 309
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.67 E-value=0.041 Score=55.03 Aligned_cols=42 Identities=19% Similarity=0.010 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHhcCC----CeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 147 KPTPIQAACIPLALTGR----DICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~----~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
.++|||...+..++... -.|+.||.|.|||..+ ..+...++.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcC
Confidence 35789999998887642 4789999999999763 555555554
No 310
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.66 E-value=0.18 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=18.8
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.++++.||+|+|||.+ +-.++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5789999999999976 345555443
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.64 E-value=0.093 Score=49.66 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC-----CceEEEEeCCCCh
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-----DIRCCLVVGGLST 236 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~-----~~~~~~~~~~~~~ 236 (586)
|..+++.|++|+|||+..+-.+.+.+...+. ++++++-. +-..++.+.+..+.-.. .-....+......
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-----~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE-----KVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-------EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-----cEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 5678899999999997654445455444122 37777743 33455555555432100 0001111111000
Q ss_pred HHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC----CCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----LGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 237 ~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~----~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
.. . . -..+..+...+... +.-.+.+.+|||-...+.. ..+...+..+...+.....+.++++..
T Consensus 93 ~~-~-------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 93 IG-W-------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp ST---------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cc-c-------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 00 0 0 11233344433321 1112337999999988732 224556666766666566677777763
No 312
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.63 E-value=0.1 Score=53.08 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 007879 136 LLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (586)
Q Consensus 136 l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~ 215 (586)
++..++. .+..+...|.++.-..-.|+- .+.|-.|||||...++-+ .++... .+.-+++|.+-|+.|+.++...
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~k---nPd~~I~~Tfftk~L~s~~r~l 225 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHSK---NPDSRIAFTFFTKILASTMRTL 225 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhcC---CCCceEEEEeehHHHHHHHHHH
Confidence 3444433 344566678777655445554 678889999998633333 333322 2345899999999999999988
Q ss_pred HHHHh
Q 007879 216 IEKIA 220 (586)
Q Consensus 216 ~~~l~ 220 (586)
+.+++
T Consensus 226 v~~F~ 230 (660)
T COG3972 226 VPEFF 230 (660)
T ss_pred HHHHH
Confidence 88876
No 313
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.71 Score=44.23 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=80.9
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCC-----CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGR-----DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~-----~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 198 (586)
...|++..=-+...++|+..=+. |+ -+|.++.|+ .+|+.+|+|+||+.. .-++.. ... .
T Consensus 129 NVkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVAT---EAn-----S 192 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVAT---EAN-----S 192 (439)
T ss_pred CCchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHh---hcC-----C
Confidence 44566653333445555543221 11 246777774 588999999999953 333221 111 3
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
+.+-+....|+..|.-.-.++.+ .|+.+.+. ...++|.||
T Consensus 193 TFFSvSSSDLvSKWmGESEkLVk----------------------------------nLFemARe------~kPSIIFiD 232 (439)
T KOG0739|consen 193 TFFSVSSSDLVSKWMGESEKLVK----------------------------------NLFEMARE------NKPSIIFID 232 (439)
T ss_pred ceEEeehHHHHHHHhccHHHHHH----------------------------------HHHHHHHh------cCCcEEEee
Confidence 67777778886655433333211 12222222 245689999
Q ss_pred CcccccCCC-------cHHHHHHHHHHC----CCCCcEEEEeecCchhHH-HHHHHhcCCCeEEe
Q 007879 279 EADRLLELG-------FSAEIHELVRLC----PKRRQTMLFSATLTEDVD-ELIKLSLTKPLRLS 331 (586)
Q Consensus 279 Eah~l~~~~-------~~~~i~~i~~~~----~~~~q~i~~SAT~~~~~~-~~~~~~~~~~~~~~ 331 (586)
|+|.+.... .+..-.+++-.+ ...-.++++.||-.|.+. ..++.-+...++|.
T Consensus 233 EiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 233 EIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred hhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceecc
Confidence 999876422 111112222222 234568899999776543 34555555555443
No 314
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.32 Score=54.24 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=23.5
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCch
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 314 (586)
..++++||||||.|.... ...+.+++..-|....+|+ ..|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFIL-aTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLL-ATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEE-ECCCch
Confidence 468899999999985332 2333334443333343333 344333
No 315
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.21 Score=54.18 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=24.2
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
....+++||||+|.|.... ...+.+.+..-+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999986433 233334444444444445443
No 316
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.26 Score=52.56 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=24.1
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
....+++||||||+|.... ...+.+.+..-|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3567899999999986532 233444455444444444444
No 317
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.52 E-value=0.1 Score=51.93 Aligned_cols=64 Identities=30% Similarity=0.321 Sum_probs=41.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHH-hcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 139 ACEALGYSKPTPIQAACIPLA-LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 139 ~l~~~~~~~~~~~Q~~~i~~i-l~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
.+...|. +++.|...+..+ ..+++++++|+||||||.. +-.++..+...+ +..+++++-.+.+|
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~---~~~rivtIEd~~El 190 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD---PTERVFIIEDTGEI 190 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC---CCceEEEEcCCCcc
Confidence 3344444 567787777654 4567899999999999964 445554442211 23368888888877
No 318
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.44 E-value=0.28 Score=54.54 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=64.5
Q ss_pred CCceEEEEeccHHHHHHHHHHH----hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCCCCCccEEE
Q 007879 369 FTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l----~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gldi~~v~~VI 443 (586)
.+.+++|.++|...+...+..+ ...++++..+||+++..+|..++..+.+|..+|+|+|... ...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3668999999998888766554 4457999999999999999999999999999999999754 4567788899888
Q ss_pred Ee
Q 007879 444 NY 445 (586)
Q Consensus 444 ~~ 445 (586)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 53
No 319
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.41 E-value=0.72 Score=44.85 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHh----cCC-CeEEEcCCCchhHHH
Q 007879 148 PTPIQAACIPLAL----TGR-DICGSAITGSGKTAA 178 (586)
Q Consensus 148 ~~~~Q~~~i~~il----~g~-~~lv~~~TGsGKT~~ 178 (586)
+++.+.+++..+. .+. .+++.|++|+|||..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4555566665543 233 577999999999975
No 320
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.099 Score=52.13 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.8
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
.+.|+.||+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 37899999999999864
No 321
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.38 E-value=0.83 Score=44.79 Aligned_cols=130 Identities=21% Similarity=0.287 Sum_probs=72.9
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC-c-HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-T-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P-t-r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
+++.|-.|+|||++ +.=+.+++.... .+|++.+- | |+-|. ++++.|+...++.+..-..|..+..
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~~g----~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa---- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQQG----KSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA---- 208 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHHCC----CeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH----
Confidence 56899999999986 343444443322 13554443 2 33333 3344455555666544222211110
Q ss_pred hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCc-----E-EEEeecCchh
Q 007879 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQ-----T-MLFSATLTED 315 (586)
Q Consensus 243 ~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q-----~-i~~SAT~~~~ 315 (586)
...+.+... .-+++++|++|=|-+|-+. +....+.++.+.+.+... + +.+=||..++
T Consensus 209 -------------VafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 209 -------------VAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred -------------HHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 123344332 2457889999999998764 466777777777665432 4 4447888877
Q ss_pred HHHHHHHh
Q 007879 316 VDELIKLS 323 (586)
Q Consensus 316 ~~~~~~~~ 323 (586)
...-++.+
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 65554443
No 322
>PF05729 NACHT: NACHT domain
Probab=94.37 E-value=0.21 Score=44.35 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=27.0
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
-++|.|++|+|||.. +..++..+...........+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 367999999999975 4555555554433211123455555555544
No 323
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.17 Score=51.67 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=21.7
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~ 308 (586)
...+++||||+|.+....+. .+.+.+..-|....+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEE
Confidence 46789999999998643322 233333433344444443
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.31 E-value=0.42 Score=45.27 Aligned_cols=52 Identities=12% Similarity=-0.012 Sum_probs=31.2
Q ss_pred hcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
..|.-+++.|++|+|||+.. +.++..+...+ .++++++... -..+..+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~-~~~~~~~~~~g-----~~~~yi~~e~-~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILS-QRLAYGFLQNG-----YSVSYVSTQL-TTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHHHhCC-----CcEEEEeCCC-CHHHHHHHHHH
Confidence 34677889999999999753 44444444332 2577777433 33444444443
No 325
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.29 Score=52.02 Aligned_cols=23 Identities=22% Similarity=-0.009 Sum_probs=16.9
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHh
Q 007879 165 ICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+|++||.|+|||.++ ..+...+.
T Consensus 39 ~Lf~GppGtGKTTlA-~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTA-RLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHh
Confidence 489999999999864 44444444
No 326
>PRK04195 replication factor C large subunit; Provisional
Probab=94.29 E-value=0.28 Score=52.15 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.9
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+.+|+.||+|+|||.+
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999975
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.22 E-value=0.22 Score=47.48 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
|..+++.|++|+|||+..+..+.+.+ .++. ++++++- .+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge-----~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QMGE-----PGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-----cEEEEEe-eCCHHHHHHHHHHh
Confidence 56788999999999986544444444 3222 4777773 45566666666654
No 328
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.22 Score=52.35 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=33.1
Q ss_pred cCceEEEEeCcccccC-------CCcHHHHHHHHHHC---CCCCcEEEEeecCchhHHH
Q 007879 270 DDLAVLILDEADRLLE-------LGFSAEIHELVRLC---PKRRQTMLFSATLTEDVDE 318 (586)
Q Consensus 270 ~~~~~lViDEah~l~~-------~~~~~~i~~i~~~~---~~~~q~i~~SAT~~~~~~~ 318 (586)
+...+|.+||.|.|.. +.-...+.+++..+ ....++.++.||-.|++.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 3456899999999862 22344455555444 3456788999998887643
No 329
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.20 E-value=0.29 Score=47.51 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=60.3
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcC---CCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~---~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (586)
.+++++|+||-|||.+. --+...... .....-|-++|-+|...-....+..+-... +.... ...+....
T Consensus 62 p~lLivG~snnGKT~Ii--~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~---~~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII--ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYR---PRDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHH--HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccC---CCCCHHHH
Confidence 58999999999999742 222222111 111123556777777766555555554322 22110 11111110
Q ss_pred HHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHH--HHHHHHHHCCCCCcE-EEEeec
Q 007879 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA--EIHELVRLCPKRRQT-MLFSAT 311 (586)
Q Consensus 240 ~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~--~i~~i~~~~~~~~q~-i~~SAT 311 (586)
. ...+..++. -.++++||||.|.++...... .+...++.+....++ ++.-+|
T Consensus 134 ~--------------~~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 134 E--------------QQVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred H--------------HHHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 0 011223332 367899999999998665432 233444444444333 333345
No 330
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.25 Score=53.50 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.1
Q ss_pred ccCceEEEEeCcccccCCC
Q 007879 269 LDDLAVLILDEADRLLELG 287 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~ 287 (586)
...++++||||+|.|....
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a 140 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA 140 (618)
T ss_pred cCCceEEEEEChhhCCHHH
Confidence 3568999999999986543
No 331
>PRK10867 signal recognition particle protein; Provisional
Probab=94.11 E-value=0.64 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=16.5
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
-++++|++|+|||++. .-+..++.
T Consensus 102 vI~~vG~~GsGKTTta-akLA~~l~ 125 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA-GKLAKYLK 125 (433)
T ss_pred EEEEECCCCCcHHHHH-HHHHHHHH
Confidence 3568999999999863 33333443
No 332
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.25 Score=52.01 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.7
Q ss_pred CeEEEcCCCchhHHHh
Q 007879 164 DICGSAITGSGKTAAF 179 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~ 179 (586)
.+|++||+|+|||.++
T Consensus 38 ~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 38 AYIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999864
No 333
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.09 E-value=0.45 Score=46.68 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457899999999999764
No 334
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.08 E-value=0.24 Score=54.91 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=64.4
Q ss_pred CceEEEEeccHHHHHHHHHHHhh-cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~-~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 446 (586)
+.++||.++++..+..+.+.|.. .+..+..+||+++..+|......+..|..+|+|+|..+.. +.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 56899999999999999888875 4788999999999999999999999999999999985432 5567788887544
No 335
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.06 E-value=0.25 Score=54.96 Aligned_cols=74 Identities=23% Similarity=0.210 Sum_probs=58.2
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc----C-CceEE-ecCCCCHHHHHHHHHHHhcCCCcEEEecCcc
Q 007879 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA----A-LKAAE-LHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (586)
Q Consensus 357 ~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~----~-~~~~~-l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 430 (586)
....+..+.-...+.++++.+||...+.+..+.|... + ..+.. +|+.|+..++..++++|.+|..+|||+|..+
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3444555555556789999999998888887777543 2 43333 9999999999999999999999999999865
No 336
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.00 E-value=0.35 Score=51.86 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=23.9
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...++++||||+|.|....+ ..+.+.+..-|....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35688999999998865332 23334444444445455444
No 337
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.28 Score=53.35 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=21.8
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEE
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~ 307 (586)
..++++||||+|+|....+ ..+.+.+..-|....+|+
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLL 154 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEE
Confidence 4688999999999865433 333334444333333333
No 338
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.91 E-value=0.24 Score=53.43 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=14.6
Q ss_pred ccCceEEEEeCcccccCC
Q 007879 269 LDDLAVLILDEADRLLEL 286 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~ 286 (586)
...++++||||+|.|...
T Consensus 117 ~~~~kViIIDE~~~Lt~~ 134 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG 134 (559)
T ss_pred cCCeEEEEEECcccCCHH
Confidence 457889999999988643
No 339
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.91 E-value=0.16 Score=46.96 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=14.0
Q ss_pred CeEEEcCCCchhHHHh
Q 007879 164 DICGSAITGSGKTAAF 179 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~ 179 (586)
++|++||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6899999999999753
No 340
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.82 E-value=0.086 Score=54.40 Aligned_cols=43 Identities=30% Similarity=0.276 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHhcCCC--eEEEcCCCchhHHHhhhhhHHHHhcCC
Q 007879 148 PTPIQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYRP 191 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~--~lv~~~TGsGKT~~~~l~~l~~l~~~~ 191 (586)
+++.|...+..+++... +|+.||||||||.+ +..++..+....
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 36778888877777544 45899999999987 677777765443
No 341
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.80 E-value=0.28 Score=48.77 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHh----cC---CCeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 148 PTPIQAACIPLAL----TG---RDICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 148 ~~~~Q~~~i~~il----~g---~~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
++|||+..+..+. .| +-.++.||.|.||+..+ ..+...++-.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHHcCC
Confidence 3567776666654 34 35679999999999764 5555555543
No 342
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.75 E-value=0.61 Score=46.80 Aligned_cols=42 Identities=17% Similarity=0.025 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHhc--C---CCeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 148 PTPIQAACIPLALT--G---RDICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 148 ~~~~Q~~~i~~il~--g---~~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
++|||...+..+.. + +-.++.||.|.||+..+ ..+...++..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcCC
Confidence 36777777777664 2 35779999999999764 5555555543
No 343
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.74 E-value=0.98 Score=45.15 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHhc--C---CCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 148 PTPIQAACIPLALT--G---RDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 148 ~~~~Q~~~i~~il~--g---~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
++|||...+..+.. + +..|+.||.|.|||..+ ..+...++
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la-~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA-RFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH-HHHHHHHc
Confidence 36788888877764 2 35789999999999763 44444444
No 344
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.73 E-value=0.38 Score=59.50 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=43.8
Q ss_pred CCCcHHHHHHHHHHhcCC--CeEEEcCCCchhHHHhh---hhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 146 SKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFA---LPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~--~~lv~~~TGsGKT~~~~---l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
..+++.|..++..++.+. -+++.|..|+|||.+.. -++...+ .. .+.+|+.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-ES----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-Hh----cCCeEEEEeChHHHHHHH
Confidence 369999999999998764 45689999999997531 1222222 21 134689999998776654
No 345
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.68 E-value=0.71 Score=49.15 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhc------CCC-eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 149 TPIQAACIPLALT------GRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 149 ~~~Q~~~i~~il~------g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
|--|..++-.++. -+. +-+.|.-|-||+.+..+.+..++..+ -..+.|..|.-+-..-+++.+-+-..
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-----ysnIyvtSPspeNlkTlFeFv~kGfD 329 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-----YSNIYVTSPSPENLKTLFEFVFKGFD 329 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-----cceEEEcCCChHHHHHHHHHHHcchh
Confidence 5678887765554 133 44899999999998888877776543 22488999998876666665543111
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHH----------------HHHhcCCcCccCceEEEEeCcccccC
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMID----------------HLRNSMSVDLDDLAVLILDEADRLLE 285 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~----------------~l~~~~~~~l~~~~~lViDEah~l~~ 285 (586)
..+..-. . ..+||-.|..-+-. ++.-.....+...+++|||||-.+.
T Consensus 330 aL~Yqeh-----~-----------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAIP- 392 (1011)
T KOG2036|consen 330 ALEYQEH-----V-----------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAIP- 392 (1011)
T ss_pred hhcchhh-----c-----------chhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhcCC-
Confidence 1111100 0 01111111111111 1111112346788999999999873
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 286 LGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 286 ~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
...+..++ .+.+++|+.|++
T Consensus 393 ---Lplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 393 ---LPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred ---HHHHHHhh-----cceeEEEeeccc
Confidence 45555554 456799999986
No 346
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.62 E-value=0.14 Score=45.59 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=40.0
Q ss_pred ccCceEEEEeCcccccCCCc--HHHHHHHHHHCCCCCcEEEEeecCchhHHHHHH
Q 007879 269 LDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (586)
-..+++||+||+-..++.++ ...+..+++..|...-+|+..-.+|+.+.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35789999999998887774 356677788877777777777777777766554
No 347
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.60 E-value=0.27 Score=50.10 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHcCCCC--CcHHH-----HHHHHHHhcCCCeEEEcCCCchhHHHhh
Q 007879 131 NLSRPLLRACEALGYSK--PTPIQ-----AACIPLALTGRDICGSAITGSGKTAAFA 180 (586)
Q Consensus 131 ~l~~~l~~~l~~~~~~~--~~~~Q-----~~~i~~il~g~~~lv~~~TGsGKT~~~~ 180 (586)
...+++--.+...|+.. ++.-| ..+++++-.+.|++..||+|+|||..|.
T Consensus 171 T~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 171 TLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred CHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 34455555566677763 33322 1223677778999999999999997654
No 348
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.31 Score=48.44 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
+.+|..||+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 68999999999999753
No 349
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.50 E-value=0.89 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.174 Sum_probs=16.1
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
-++++|++|+|||++. .-+..++
T Consensus 101 vi~~vG~~GsGKTTta-akLA~~l 123 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC-GKLAYYL 123 (428)
T ss_pred EEEEECCCCCcHHHHH-HHHHHHH
Confidence 3569999999999863 3333333
No 350
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.49 E-value=0.16 Score=49.82 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
++.++++||||+|||.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345779999999999863
No 351
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.49 E-value=0.57 Score=50.29 Aligned_cols=135 Identities=19% Similarity=0.147 Sum_probs=81.5
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc--CCceEEEEeCCCChHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF--TDIRCCLVVGGLSTKMQ 239 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ 239 (586)
.+-.++..|==.|||... .+++..++..- .+.++++++|.+..+..+++.+...... .+..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwiv-v~iI~~ll~s~---~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFL-VPLIALALATF---RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--- 325 (738)
T ss_pred ccceEEEecccCCchhhH-HHHHHHHHHhC---CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---
Confidence 456788889999999863 46665554321 2447999999999999999888876542 1212222222 111
Q ss_pred HHHhcCC--CcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCch
Q 007879 240 ETALRSM--PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (586)
Q Consensus 240 ~~~~~~~--~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 314 (586)
.-.+.++ ..|.++|- ++.....-..++++|||||+-+....+...+ -.+. ..+.++|++|.|.+.
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~--~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN--QTNCKIIFVSSTNTG 392 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh--ccCccEEEEecCCCC
Confidence 0011222 35666641 2222233457899999999988764333333 2222 247889999998664
No 352
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.42 E-value=0.18 Score=50.70 Aligned_cols=28 Identities=32% Similarity=0.262 Sum_probs=20.4
Q ss_pred CCC-eEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 162 GRD-ICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 162 g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
... +|+.||.|+|||.+ .+.+...+...
T Consensus 23 ~~halL~~Gp~G~Gktt~-a~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTA-ALALAKELLCE 51 (325)
T ss_pred CCceeeeeCCCCCCHHHH-HHHHHHHHhCC
Confidence 345 89999999999986 35555555543
No 353
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.42 E-value=0.09 Score=55.67 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 147 ~~~~~Q~~~i~~il----~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
+|+.+|...+..+. .|+-.|+..|||+|||+..+..++.++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 58999988876654 489889999999999998665555544
No 354
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.40 E-value=0.54 Score=44.49 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=28.6
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
.|..+++.|++|+|||......+.+.+ ..+. .++++.. ...+.++.+.+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~-----~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGD-----PVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-hcCC-----eEEEEEc-cCCHHHHHHHHHH
Confidence 356788999999999975433333333 3222 4666654 2233444444433
No 355
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.38 E-value=0.34 Score=51.62 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=63.5
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 446 (586)
+.++||.+++...+..+...|... +..+..+||+++..+|........+|..+|+|+|..+-. +.++++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 568999999999999888888653 678999999999999999999999999999999986542 4567788877543
No 356
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.37 E-value=0.48 Score=47.56 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhc----CC---CeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 148 PTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 148 ~~~~Q~~~i~~il~----g~---~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
++|||...+..+.+ |+ -.|+.||.|.||+..+ ..+...++-
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 56777777766653 33 5779999999999763 555555554
No 357
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=0.47 Score=51.53 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=24.3
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
...++++||||+|.|.... ...+.+.+..-|.... ++|.+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~-fIl~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVK-FIFATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeE-EEEEeCCh
Confidence 4578999999999876432 2334444444333333 33444533
No 358
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.34 E-value=0.48 Score=49.35 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.5
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
..+++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36889999999999753
No 359
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.34 E-value=0.11 Score=52.04 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
++..+++++++|+||||||.. +-.++..+ .. ..+++.+=.+.+|.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i-~~-----~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI-PP-----QERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc-CC-----CCCEEEECCCcccc
Confidence 344578999999999999974 33333332 21 22577777887773
No 360
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.34 E-value=1.9 Score=38.73 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred CceEEEEeCcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHH
Q 007879 271 DLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 271 ~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
..+++|+|....... ......+..+........-++.++|+...+.......
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~ 134 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKA 134 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHH
Confidence 566788888776532 1123333334333333444556666554444444333
No 361
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.29 E-value=0.39 Score=48.94 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=32.3
Q ss_pred CceEEEEeCcccccCC-CcHHHHHHHHHHCCCCC-cEEEEeecCchhHH
Q 007879 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKRR-QTMLFSATLTEDVD 317 (586)
Q Consensus 271 ~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~-q~i~~SAT~~~~~~ 317 (586)
++++++||.++.+... .....+..+.+.+.... |+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6789999999998765 35666667776665444 66666656665543
No 362
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.4 Score=46.45 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH-----------HHHHHHHHHHHHhhcCCceEEEE
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-----------LAVQVHSMIEKIAQFTDIRCCLV 230 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~-----------La~Q~~~~~~~l~~~~~~~~~~~ 230 (586)
+|-+++.||+|+|||.. +-++.+++--+-........||=...-. |+.++++.+.++....+.-+.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56678999999999964 5666666554432222223444444433 45666667777776666666666
Q ss_pred eCCCCh------------------------HHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC
Q 007879 231 VGGLST------------------------KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (586)
Q Consensus 231 ~~~~~~------------------------~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 286 (586)
...... -.+...+++.+.|+|-|...|. ..++...+|-||-....
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~-----------~siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT-----------DSIDVAFVDRADIVFYV 324 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH-----------HHHHHHhhhHhhheeec
Confidence 543210 0123335555666655533333 34556778999876654
Q ss_pred C
Q 007879 287 G 287 (586)
Q Consensus 287 ~ 287 (586)
|
T Consensus 325 G 325 (423)
T KOG0744|consen 325 G 325 (423)
T ss_pred C
Confidence 4
No 363
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.43 Score=52.04 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.1
Q ss_pred ccCceEEEEeCcccccC
Q 007879 269 LDDLAVLILDEADRLLE 285 (586)
Q Consensus 269 l~~~~~lViDEah~l~~ 285 (586)
....++|||||+|.|..
T Consensus 118 ~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 118 LARYKVYIIDEVHMLST 134 (585)
T ss_pred cCCeEEEEEeChHhCCH
Confidence 45788999999998864
No 364
>PRK10436 hypothetical protein; Provisional
Probab=93.24 E-value=0.24 Score=51.81 Aligned_cols=39 Identities=38% Similarity=0.334 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhc--CCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 149 TPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 149 ~~~Q~~~i~~il~--g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.+.|...+..++. +.-+|++||||||||.+ +..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 3455556655544 34577999999999986 355666653
No 365
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.18 E-value=0.47 Score=52.70 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=24.4
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhH
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 316 (586)
...++||||+|++... ....++..+. ..++++++||-.+..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChH
Confidence 4568999999997532 1223333333 356777777755433
No 366
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.17 E-value=0.53 Score=51.95 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=64.2
Q ss_pred CCceEEEEeccHHHHHHHHHHH----hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCCCCCccEEE
Q 007879 369 FTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l----~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gldi~~v~~VI 443 (586)
.+.+++|.+||...+...+..+ ...++++..++|+++..+|...+....+|..+|+|+|... ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3568999999998888776554 4457999999999999999999999999999999999865 4467778888887
Q ss_pred Ee
Q 007879 444 NY 445 (586)
Q Consensus 444 ~~ 445 (586)
.=
T Consensus 363 ID 364 (630)
T TIGR00643 363 ID 364 (630)
T ss_pred Ee
Confidence 53
No 367
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.16 Score=57.17 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=38.5
Q ss_pred EECcHHHHHHHHhcCCcCccCceEEEEeCccccc-------CCCcHHHH---HHHHHHCCCCCcEEEEeecCchh
Q 007879 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-------ELGFSAEI---HELVRLCPKRRQTMLFSATLTED 315 (586)
Q Consensus 251 i~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-------~~~~~~~i---~~i~~~~~~~~q~i~~SAT~~~~ 315 (586)
|+.+++=+.++... ..-....++.+||+|-+. +.-+...+ ..++.-++...|+++.+||..++
T Consensus 345 vgEaERqlrllFee--A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 345 VGEAERQLRLLFEE--AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred cCcHHHHHHHHHHH--HhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 55566555555431 223467789999999443 11233333 34445556788999999997654
No 368
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.11 E-value=0.87 Score=43.48 Aligned_cols=39 Identities=31% Similarity=0.259 Sum_probs=25.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
.|.-++++|++|+|||.. ++-++..+.... +.+++++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~~----g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKKQ----GKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHhC----CCceEEEeC
Confidence 456778999999999975 444444443331 224788774
No 369
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.07 E-value=0.14 Score=46.31 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=28.1
Q ss_pred HHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 007879 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (586)
Q Consensus 157 ~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q 211 (586)
.++-.++++++.|++|+|||..+ ..+...+...+. .|++ ++...|...
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~g~-----~v~f-~~~~~L~~~ 89 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLA-VAIANEAIRKGY-----SVLF-ITASDLLDE 89 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHTT-------EEE-EEHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccCCc-----ceeE-eecCceecc
Confidence 33445789999999999999864 555555555332 3555 455566544
No 370
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.04 E-value=0.53 Score=47.93 Aligned_cols=51 Identities=25% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
|.-+++.|++|+|||.. ++-++..+... +.+++++.-. +...|+...+..+
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~~-----g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAKR-----GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEECC-cCHHHHHHHHHHc
Confidence 45678999999999975 34444444332 2368887654 3345665555543
No 371
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.04 E-value=0.44 Score=49.94 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=32.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
|.-+++.|++|+|||+. ++-++..+... +.+++++.-. +...|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL-~lq~a~~~a~~-----g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTL-LLQVAARLAAA-----GGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEEcc-ccHHHHHHHHHHc
Confidence 45678999999999975 34444444322 2368887753 4456666655554
No 372
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.01 E-value=0.24 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.011 Sum_probs=17.5
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+..|++||.|+|||..+ ..+...+.
T Consensus 39 hA~Lf~GP~GvGKTTlA-~~lAk~L~ 63 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA-KIFAKAIN 63 (605)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHhc
Confidence 35789999999999864 33334443
No 373
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=0.39 Score=51.80 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.4
Q ss_pred CeEEEcCCCchhHHHhh
Q 007879 164 DICGSAITGSGKTAAFA 180 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~ 180 (586)
.+|+.||.|+|||.++.
T Consensus 40 a~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 40 AYLFSGTRGVGKTTIAR 56 (624)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999998753
No 374
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.83 E-value=0.48 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=17.0
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.+|++||.|+|||.++ ..+...+.
T Consensus 40 a~lf~Gp~G~GKtt~A-~~~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAA-RVFAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhc
Confidence 4789999999999864 33334443
No 375
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.80 E-value=0.17 Score=57.41 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=77.6
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCc-EEEecCcccccCCCCCccEEEEe
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVD-FLIATDVAARGLDIIGVQTVINY 445 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~-vLvaT~~~~~Gldi~~v~~VI~~ 445 (586)
.....++|+|+.-......+...+...++.+...-++ ++-...+..|++ +. +|+-+...+-|+|+-.+.||+..
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhhee
Confidence 4445789999998888888888887777766555443 333445666765 44 46778889999999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCcce
Q 007879 446 ACPRDLTSYVHRVGRTARAGREGY 469 (586)
Q Consensus 446 ~~p~s~~~y~Qr~GR~gR~g~~g~ 469 (586)
++-.|+..-.|.+||.+|.|+.--
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccc
Confidence 999999999999999999997643
No 376
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.70 E-value=0.68 Score=47.36 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=18.2
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.++++.||+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5789999999999976 34455544
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.68 E-value=3.6 Score=40.95 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=31.4
Q ss_pred cCceEEEEeCcccccC-CCcHHHHHHHHHHC------CCCCcEEEEeecCchhHHHHHHH
Q 007879 270 DDLAVLILDEADRLLE-LGFSAEIHELVRLC------PKRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 270 ~~~~~lViDEah~l~~-~~~~~~i~~i~~~~------~~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
.++++||||=+-++.. ......+..+.+.+ .+...++.++||...+....+..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 4678999999988653 22334555554432 22334688899976544433433
No 378
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.65 E-value=0.24 Score=45.16 Aligned_cols=32 Identities=44% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHH
Q 007879 147 KPTPIQAACIPLALT-GRDICGSAITGSGKTAA 178 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~ 178 (586)
.+++-|...+...+. |..++++||||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 466777777766655 67888999999999975
No 379
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.63 E-value=0.28 Score=49.80 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=25.8
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
+..++++||||||||.. +-.++..+..... ..+++.+=...++
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~~---~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETYP---DRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcCC---CceEEEEecCchh
Confidence 44678999999999975 4555555543221 1245555444444
No 380
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.56 E-value=0.36 Score=47.51 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
..+|++||+|+|||..+-+.+-. .+....+.+=+.-|.+-...+...++
T Consensus 163 pSmIlWGppG~GKTtlArlia~t------sk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAST------SKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhh------cCCCceEEEEEeccccchHHHHHHHH
Confidence 37899999999999753222211 11122345555555555555444444
No 381
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.53 E-value=1.2 Score=47.46 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=24.8
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...++++||||||.|.... ...+.+.+..-|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578999999999986432 333444445445555545444
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.50 E-value=0.89 Score=43.95 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
|.-+++.|++|+|||... +.++......+ .+++++.-
T Consensus 36 gs~~lI~G~pGtGKT~l~-~qf~~~~a~~G-----e~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMV-EQFAVTQASRG-----NPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHH-HHHHHHHHhCC-----CcEEEEEe
Confidence 566789999999999754 44333332222 24777773
No 383
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.47 E-value=0.6 Score=49.40 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+.+|+.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999975
No 384
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.39 E-value=0.72 Score=45.78 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHhc----CC---CeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 147 KPTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~----g~---~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
.++|+|...+..+.. |+ -.++.||.|.||+..+ ..+...++-.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 356777777766553 43 5789999999999753 5555555443
No 385
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.38 E-value=0.2 Score=53.93 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=55.3
Q ss_pred HHHHHhcCCCcEEEecCcccccCCCCCccEE--------EEeCCCCChhHHHHHhhhcccCCC-cceEEEEe-cc--CcH
Q 007879 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTV--------INYACPRDLTSYVHRVGRTARAGR-EGYAVTFV-TD--NDR 479 (586)
Q Consensus 412 ~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V--------I~~~~p~s~~~y~Qr~GR~gR~g~-~g~~~~l~-~~--~d~ 479 (586)
--++|.+|+..|-|-+.+++-||-++.-+.| |-..+|||....+|..||++|..+ .+--|+|+ ++ .++
T Consensus 849 EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 849 EKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred HHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 3468999999999999999999999776555 458899999999999999999664 23334433 22 345
Q ss_pred HHHHHHHH
Q 007879 480 SLLKAIAK 487 (586)
Q Consensus 480 ~~~~~i~~ 487 (586)
.+..-+.+
T Consensus 929 RFAS~VAK 936 (1300)
T KOG1513|consen 929 RFASIVAK 936 (1300)
T ss_pred HHHHHHHH
Confidence 44443433
No 386
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.31 E-value=0.79 Score=52.44 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCCCCCccEEE
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gldi~~v~~VI 443 (586)
.+.+++|.+||...|......|.. .++++..++|..+..++..++..+.+|+.+|+|+|..+ ...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 357899999999999888776554 46788899999999999999999999999999999854 4567788888887
Q ss_pred Ee
Q 007879 444 NY 445 (586)
Q Consensus 444 ~~ 445 (586)
.-
T Consensus 579 ID 580 (926)
T TIGR00580 579 ID 580 (926)
T ss_pred ee
Confidence 53
No 387
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=0.72 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=16.6
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
..|++||.|+|||.++ ..+...+
T Consensus 40 a~Lf~Gp~GvGKttlA-~~lAk~L 62 (620)
T PRK14954 40 GYIFSGLRGVGKTTAA-RVFAKAV 62 (620)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHh
Confidence 4789999999999864 3333343
No 388
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.17 E-value=0.4 Score=48.01 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=28.3
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
+..+++++++|+||||||.. +-.++..+ .. ..+++.+=-+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i-p~-----~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI-PA-----IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC-CC-----CCeEEEecCCCcc
Confidence 34578999999999999974 34444433 21 2357776666666
No 389
>PHA00729 NTP-binding motif containing protein
Probab=92.15 E-value=1.3 Score=41.35 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=38.2
Q ss_pred cEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCC-CcH----HHHHHHHHHCCCCCcEEEEeecCchhHHHHHHH
Q 007879 248 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFS----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 248 ~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~----~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
..++.+...|+..+.... -....++++|||++-.-+.. .+. .....+...+....+++.+...-+.++...+..
T Consensus 60 ~~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 455666666666654321 11234578999994422211 011 122233333344456677777666666666555
Q ss_pred h
Q 007879 323 S 323 (586)
Q Consensus 323 ~ 323 (586)
-
T Consensus 139 R 139 (226)
T PHA00729 139 K 139 (226)
T ss_pred C
Confidence 3
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=92.08 E-value=0.16 Score=52.97 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=37.1
Q ss_pred EECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHH
Q 007879 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (586)
Q Consensus 251 i~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~ 319 (586)
+-+||-..++.... +...+.++.|+|||-.-+..+....+-.+++... +=++|-.-.+.+..+
T Consensus 570 vLS~GEqQRLa~AR--Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 570 VLSPGEQQRLAFAR--LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLWKF 632 (659)
T ss_pred hcCHHHHHHHHHHH--HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHHhh
Confidence 34566554443331 3345678999999998887777777666665542 334444444444433
No 391
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.05 E-value=0.63 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=17.7
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+.+|+.||.|+|||.++ ..+...+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA-~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA-RILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHH-HHHHHHhc
Confidence 45689999999999864 44444443
No 392
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.02 E-value=0.6 Score=47.95 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=27.2
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHH
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~ 317 (586)
....+++||||+|+|.... ...+.+.+..-+. .-++++++|-+..+.
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~-~~~fIL~a~~~~~ll 161 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPP-RTVWLLCAPSPEDVL 161 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCC-CCeEEEEECChHHCh
Confidence 3577899999999986432 2334444444333 345555555444443
No 393
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.00 E-value=1.1 Score=42.64 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=30.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
|.-+++.|++|+|||...+..+...+ .+ +.+++++.--. -..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-~~-----g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-KQ-----GKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-hC-----CCEEEEEEcCC-CHHHHHHHHHHC
Confidence 45678999999999975433333333 22 22567766543 334555555553
No 394
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.96 E-value=1.1 Score=40.01 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=62.8
Q ss_pred EEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcC
Q 007879 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245 (586)
Q Consensus 166 lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (586)
.+.--.|-|||.+++=-++.++ . .+.+|+|+.=.+.- ..+.....+....++.+...-.+.........
T Consensus 7 ~vytG~GKGKTTAAlGlalRA~-G-----~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~--- 75 (172)
T PF02572_consen 7 QVYTGDGKGKTTAALGLALRAA-G-----HGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE--- 75 (172)
T ss_dssp EEEESSSS-HHHHHHHHHHHHH-C-----TT--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH---
T ss_pred EEEeCCCCCchHHHHHHHHHHH-h-----CCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH---
Confidence 3555678899988654444443 2 23468988776651 11223333333333333221111100000000
Q ss_pred CCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCc--HHHHHHHHHHCCCCCcEEEEeecCchhHHHHHH
Q 007879 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (586)
Q Consensus 246 ~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (586)
.+ .......+..... .+.-..+++||+||+-..++.++ ...+..++...|...-+|+..-.+++.+.+.+.
T Consensus 76 -~~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 -ED--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -HH--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred -HH--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 00 0011112222222 23346799999999998887775 455777777777777767766677777766553
No 395
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.90 E-value=1.8 Score=39.55 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=18.5
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
+..|+.||.|+|||.. +..+...+..
T Consensus 15 ~~~L~~G~~G~gkt~~-a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELL-ALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHHcC
Confidence 3578999999999975 3445555544
No 396
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.73 E-value=0.56 Score=51.52 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=64.2
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-C-CceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA-A-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~-~-~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 446 (586)
+..+||.++.+..+.++...|... + ..+..+|++++..+|.+......+|+.+|+|.|..+.- .-+++...||..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 678999999999999998888754 3 67999999999999999999999999999999987642 3456777777654
No 397
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.73 E-value=0.43 Score=51.71 Aligned_cols=44 Identities=32% Similarity=0.365 Sum_probs=28.8
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 140 CEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 140 l~~~~~~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
+..+|+ .+-|...+..++.. .-++++||||||||.+ +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 344554 35666666665553 3467999999999986 45566655
No 398
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.71 E-value=2.7 Score=41.99 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=23.2
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...+|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988543 2334555555555555444433
No 399
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.67 E-value=0.21 Score=51.57 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=40.4
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEe
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~ 231 (586)
++++.|+||||||.++++|.+... +..++|+=|.-++........+. .|.+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------~~s~vv~D~Kge~~~~t~~~r~~----~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------PGSVVVLDPKGENFELTSEHRRA----LGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------CCCEEEEccchhHHHHHHHHHHH----cCCeEEEEc
Confidence 478999999999999988876542 12589999999998766555543 244454444
No 400
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.67 E-value=0.96 Score=48.52 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=68.1
Q ss_pred cCCceEEEEeccH----HHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCCCCCccEE
Q 007879 368 TFTSKVIIFSGTK----QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTV 442 (586)
Q Consensus 368 ~~~~~~lIF~~s~----~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gldi~~v~~V 442 (586)
..+.++.+-+||. +++..+.++|...|+.+..+.|.+....|..++....+|.++++|.|-++ ...+++.+..+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 3466888999985 55667778888889999999999999999999999999999999999987 678889898888
Q ss_pred EEeC
Q 007879 443 INYA 446 (586)
Q Consensus 443 I~~~ 446 (586)
|.-.
T Consensus 389 IiDE 392 (677)
T COG1200 389 IIDE 392 (677)
T ss_pred EEec
Confidence 8543
No 401
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.63 E-value=0.35 Score=49.01 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=18.8
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.+.-++++||||||||.. +-.++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456788999999999985 34444444
No 402
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.62 E-value=0.36 Score=46.72 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhc-C-CCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 149 TPIQAACIPLALT-G-RDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 149 ~~~Q~~~i~~il~-g-~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.+.|.+.+..++. . ..++++|+||||||.. +..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 4556666665554 3 3578999999999975 34455554
No 403
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.55 E-value=0.67 Score=50.58 Aligned_cols=39 Identities=33% Similarity=0.435 Sum_probs=26.0
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEE
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~ 307 (586)
+++-.++|+|||..-++..-...+.+.+..+.+.+.+++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 455578999999988887666677666654444543333
No 404
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.45 E-value=0.24 Score=52.60 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=42.2
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeC
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~ 232 (586)
.++++.||||||||..+++|.+.. .+. -++|+=|--+|........+.. |.+|.++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~~-----s~iV~D~KgEl~~~t~~~r~~~----G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YPG-----SMIVTDPKGELYEKTAGYRKKR----GYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---ccC-----CEEEEECCCcHHHHHHHHHHHC----CCEEEEeec
Confidence 468999999999999999997643 111 4899999999987766666543 345554443
No 405
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.42 E-value=2.3 Score=47.68 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.4
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
..++|+.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999753
No 406
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.40 E-value=0.24 Score=47.06 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=14.8
Q ss_pred eEEEcCCCchhHHHhhhhhHH
Q 007879 165 ICGSAITGSGKTAAFALPTLE 185 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~ 185 (586)
++|.|+.|||||.. +.-++.
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~~ 20 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLLK 20 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHHH
Confidence 47899999999974 344443
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.30 E-value=0.76 Score=50.45 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=37.2
Q ss_pred eEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 273 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
=++|+|..|.+.+......+..+++..|.+...++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999999888999999999999999999888764
No 408
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.26 E-value=0.48 Score=48.06 Aligned_cols=27 Identities=19% Similarity=0.025 Sum_probs=19.6
Q ss_pred hcCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 160 LTGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
-.|+.+++.||+|+|||.. +..+...+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred CCCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 3588899999999999975 23344443
No 409
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.25 E-value=1.9 Score=41.81 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHhc-C--CCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 156 IPLALT-G--RDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 156 i~~il~-g--~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
++.+.. + +++++.+|+|+|||+. +-++..++.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl--~~~l~~~~~ 136 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTL--LRDLARILS 136 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHH--HHHHhCccC
Confidence 444443 3 5789999999999974 555555443
No 410
>PRK13764 ATPase; Provisional
Probab=91.25 E-value=0.39 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=20.0
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.+++++++|+||||||.. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 367899999999999974 445555543
No 411
>PRK09087 hypothetical protein; Validated
Probab=91.19 E-value=0.6 Score=44.04 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=25.5
Q ss_pred EEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCch
Q 007879 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (586)
Q Consensus 274 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~ 314 (586)
+|+||++|.+.. -...+..+++.+......++++++.++
T Consensus 90 ~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p 128 (226)
T PRK09087 90 PVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWP 128 (226)
T ss_pred eEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCCh
Confidence 799999998642 355677777766654445666665443
No 412
>CHL00176 ftsH cell division protein; Validated
Probab=91.18 E-value=0.91 Score=49.69 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=26.6
Q ss_pred ceEEEEeCcccccCC-------C---cHHHHHHHHHHC---CCCCcEEEEeecCchh
Q 007879 272 LAVLILDEADRLLEL-------G---FSAEIHELVRLC---PKRRQTMLFSATLTED 315 (586)
Q Consensus 272 ~~~lViDEah~l~~~-------~---~~~~i~~i~~~~---~~~~q~i~~SAT~~~~ 315 (586)
..+|+|||+|.+... + ....+..++..+ .....++++.||-.++
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~ 332 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVD 332 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchH
Confidence 458999999998521 1 223444555443 2345677888886544
No 413
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.15 E-value=0.81 Score=47.95 Aligned_cols=146 Identities=15% Similarity=0.082 Sum_probs=82.2
Q ss_pred CCcHHHHHHHHHHhc------C----CCeEEEcCCCchhHHHhh-hhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALT------G----RDICGSAITGSGKTAAFA-LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~------g----~~~lv~~~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~ 215 (586)
.+-|+|.-++-.++. | +-+++..|-+-|||..+. |.....++.. ..+-.+.|++|+.+-+.+..+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhHH
Confidence 478999999998884 2 246899999999996433 3333333333 2344799999999999988888
Q ss_pred HHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHH---HHHHHH-hcCCcCccCceEEEEeCcccccCCCcHHH
Q 007879 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR---MIDHLR-NSMSVDLDDLAVLILDEADRLLELGFSAE 291 (586)
Q Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~---l~~~l~-~~~~~~l~~~~~lViDEah~l~~~~~~~~ 291 (586)
++....... + . ........+-...+... .+..+. +....+-.+..+.|+||.|.....+ ..
T Consensus 138 ar~mv~~~~--------~--l---~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 138 ARDMVKRDD--------D--L---RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHHhCc--------c--h---hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 776544322 0 0 00011111111111111 111111 2223344567799999999976642 44
Q ss_pred HHHHHHHC--CCCCcEEEEee
Q 007879 292 IHELVRLC--PKRRQTMLFSA 310 (586)
Q Consensus 292 i~~i~~~~--~~~~q~i~~SA 310 (586)
+..+..-+ .++.+++..|.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHhhhccCcCceEEEEec
Confidence 44444333 24555666655
No 414
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.12 E-value=2.6 Score=42.92 Aligned_cols=145 Identities=22% Similarity=0.145 Sum_probs=62.7
Q ss_pred EEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH-HH---HHHHHHhhcCCceEEEE-eCCCChHHHH
Q 007879 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ-VH---SMIEKIAQFTDIRCCLV-VGGLSTKMQE 240 (586)
Q Consensus 166 lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q-~~---~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 240 (586)
|+.++.|+|||.+.++.++..+...+. ...++++ |+..-+.. +. ..+..+... .+..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~---~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP---GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI---- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-----EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC---CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE----
Confidence 578899999998877777777665543 1245555 55544443 22 233333222 1222221 000000
Q ss_pred HHhcCCCcEEEECcHH--HHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc--hhH
Q 007879 241 TALRSMPDIVVATPGR--MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT--EDV 316 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~--l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~--~~~ 316 (586)
.+.++..|.+.+... -...+.. ..+.++++||+-.+.+..+...+......... ...+++|.|+. ..+
T Consensus 72 -~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 72 -ILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWF 143 (384)
T ss_dssp -EETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHH
T ss_pred -EecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCce
Confidence 013445566665321 1111221 46779999999887654444444333333322 22225555433 334
Q ss_pred HHHHHHhcCCC
Q 007879 317 DELIKLSLTKP 327 (586)
Q Consensus 317 ~~~~~~~~~~~ 327 (586)
..+........
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 44555444443
No 415
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.10 E-value=0.53 Score=50.76 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.3
Q ss_pred ccCceEEEEeCcccccC
Q 007879 269 LDDLAVLILDEADRLLE 285 (586)
Q Consensus 269 l~~~~~lViDEah~l~~ 285 (586)
....+++||||+|.|..
T Consensus 117 ~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN 133 (563)
T ss_pred cCCCEEEEEEChhhcCH
Confidence 46788999999999864
No 416
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.04 E-value=0.91 Score=46.77 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.4
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5789999999999975
No 417
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.96 E-value=1.4 Score=51.63 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=62.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCCCCCccEEE
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gldi~~v~~VI 443 (586)
.+.+++|.+||...+..+...|.. .++.+..+++..+..++..++..+.+|..+|+|+|..+ ...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 467899999999999888776653 35678889999999999999999999999999999744 4456677888877
Q ss_pred E
Q 007879 444 N 444 (586)
Q Consensus 444 ~ 444 (586)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 418
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.95 E-value=0.47 Score=45.25 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=14.0
Q ss_pred CeEEEcCCCchhHHHh
Q 007879 164 DICGSAITGSGKTAAF 179 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~ 179 (586)
++++.||+|.|||..+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 6899999999999754
No 419
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=0.68 Score=49.02 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.0
Q ss_pred ccCceEEEEeCcccccC
Q 007879 269 LDDLAVLILDEADRLLE 285 (586)
Q Consensus 269 l~~~~~lViDEah~l~~ 285 (586)
.....++||||||.+..
T Consensus 117 ~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cCCeeEEEEEChhhcCH
Confidence 45788999999998754
No 420
>PRK06904 replicative DNA helicase; Validated
Probab=90.93 E-value=2.7 Score=44.44 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=56.8
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEE-eC-CCChHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VG-GLSTKM 238 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~-~~-~~~~~~ 238 (586)
.|.=+++.|.||.|||.. .+-+...+.... +..|+|++.- .-..|+...+... ..++....+ .| ..+...
T Consensus 220 ~G~LiiIaarPg~GKTaf-alnia~~~a~~~----g~~Vl~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTF-AMNLCENAAMAS----EKPVLVFSLE-MPAEQIMMRMLAS--LSRVDQTKIRTGQNLDQQD 291 (472)
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHHhc----CCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHhccCCCCCHHH
Confidence 355567899999999974 454444433221 1247776543 3334555444332 223222222 23 222222
Q ss_pred H------HHHhcCCCcEEEE-----CcHHHHHHHHhcCCcCccCceEEEEeCcccccC
Q 007879 239 Q------ETALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (586)
Q Consensus 239 ~------~~~~~~~~~Ili~-----Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 285 (586)
. ...+...+.+.|- |+..+...++... .....+++||||=.+.|..
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 1 1123233445552 4555544443210 1112578999998887753
No 421
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.92 E-value=0.44 Score=52.29 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.2
Q ss_pred ccCceEEEEeCcccccC
Q 007879 269 LDDLAVLILDEADRLLE 285 (586)
Q Consensus 269 l~~~~~lViDEah~l~~ 285 (586)
....+++||||||.|..
T Consensus 116 ~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK 132 (725)
T ss_pred cCCCEEEEEEChhhCCH
Confidence 36788999999998864
No 422
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.87 E-value=1.4 Score=49.63 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.5
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.++.+++.||+|+|||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 357899999999999974
No 423
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.85 E-value=4.2 Score=42.78 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=69.9
Q ss_pred CCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCC
Q 007879 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSM 246 (586)
Q Consensus 171 TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 246 (586)
.+.||+..-++.+.+.+..+ ..|.+||.+-+.+-|.|.+..+. .+.++.+.+++|..+.......+ .+.
T Consensus 366 vF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 46688776655555544332 34569999999999999988876 46789999999997766554332 345
Q ss_pred CcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcc
Q 007879 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (586)
Q Consensus 247 ~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 281 (586)
..|+||| +.+.+ ++++.++.+||-+..-
T Consensus 439 IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 7899999 44555 5888999999996644
No 424
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.85 E-value=0.95 Score=39.29 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=27.7
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
..+.+++++||--.-++......+..+++.+. .+++++..
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 34667999999998888776777777766652 35555443
No 425
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.82 E-value=0.17 Score=59.51 Aligned_cols=94 Identities=27% Similarity=0.343 Sum_probs=71.9
Q ss_pred eEEEEeccHHHHHHHHHHHhhcC-CceEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEecCcccccCCCCCc
Q 007879 372 KVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLT-----------QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~~~~-~~~~~l~~~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v 439 (586)
..++|+.....+..+...+.... ..+..+.|.+. ...+..++..|.....++|++|.++..|+|++-+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45788887777776666665432 12222333221 2346788999999999999999999999999999
Q ss_pred cEEEEeCCCCChhHHHHHhhhcccCC
Q 007879 440 QTVINYACPRDLTSYVHRVGRTARAG 465 (586)
Q Consensus 440 ~~VI~~~~p~s~~~y~Qr~GR~gR~g 465 (586)
+.|+.++.|.....|+|+.||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999966543
No 426
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.78 E-value=0.89 Score=43.18 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC----CcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhh
Q 007879 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH----VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460 (586)
Q Consensus 385 ~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~----~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR 460 (586)
.|...+.. ++.+..++++.+... -.+.++. ..|+|+=+.++||+.+.+..+..+...+.+..++.||.=-
T Consensus 102 ~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRw 175 (239)
T PF10593_consen 102 ELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRW 175 (239)
T ss_pred HHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhc
Confidence 33444443 678888886654432 2333332 7799999999999999999999999999999999997322
Q ss_pred c-ccCCCcceEEEEeccCcHHHHHHH
Q 007879 461 T-ARAGREGYAVTFVTDNDRSLLKAI 485 (586)
Q Consensus 461 ~-gR~g~~g~~~~l~~~~d~~~~~~i 485 (586)
- -|.|-.+.|.++.++.-...+..+
T Consensus 176 FGYR~gY~dl~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 176 FGYRPGYEDLCRIYMPEELYDWFRHI 201 (239)
T ss_pred ccCCcccccceEEecCHHHHHHHHHH
Confidence 2 255556678887766444444433
No 427
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.15 Score=49.22 Aligned_cols=18 Identities=39% Similarity=0.261 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
..|+++.||||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 458999999999999853
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.77 E-value=0.28 Score=35.34 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=19.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
|...++.+++|||||.. +-++..++.
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHHHc
Confidence 45689999999999974 555555444
No 429
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.76 E-value=0.62 Score=46.27 Aligned_cols=57 Identities=33% Similarity=0.344 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHHH-hcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 145 YSKPTPIQAACIPLA-LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~i-l~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
+..+++.|..-+-.+ -.+++++++|+||||||.. +.+++..+- +..+++.+=-|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip------~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP------PEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC------chhcEEEEeccccc
Confidence 445777776665444 4578999999999999975 455554431 12357777666666
No 430
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.73 E-value=0.34 Score=52.44 Aligned_cols=57 Identities=23% Similarity=0.115 Sum_probs=43.8
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEe
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~ 231 (586)
.++++.||||||||..+++|.+..+ + .-++|+=|--++........++. |.+|.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---~-----~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---E-----DSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---C-----CCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 4789999999999999999988663 1 24899999999988777666653 55555443
No 431
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.70 E-value=0.93 Score=51.08 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=26.9
Q ss_pred CceEEEEeCcccccCC-------C-cHHHHHHHHHHCC---CCCcEEEEeecCchh
Q 007879 271 DLAVLILDEADRLLEL-------G-FSAEIHELVRLCP---KRRQTMLFSATLTED 315 (586)
Q Consensus 271 ~~~~lViDEah~l~~~-------~-~~~~i~~i~~~~~---~~~q~i~~SAT~~~~ 315 (586)
...+|+|||+|.+... + ....+.+++..+. ....++++.||-.++
T Consensus 546 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 546 APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 3568999999988521 1 1223344444443 445678888885544
No 432
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=2 Score=44.72 Aligned_cols=51 Identities=22% Similarity=0.110 Sum_probs=31.6
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHhc--------CCCeEEEcCCCchhHHHh
Q 007879 129 ELNLSRPLLRACEALGYSKPTPIQAACIP----LALT--------GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 129 ~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~il~--------g~~~lv~~~TGsGKT~~~ 179 (586)
.+|++++-++.+...|.-...+.=..++. .+.+ -..+++.||.|||||..+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 45788888777777665544433333332 1211 136889999999999643
No 433
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.63 E-value=3.1 Score=46.87 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
..++|+.||+|+|||..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 358999999999999753
No 434
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.61 E-value=0.41 Score=50.68 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHhcCC-C-eEEEcCCCchhHHHhhhhhHHHH
Q 007879 149 TPIQAACIPLALTGR-D-ICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 149 ~~~Q~~~i~~il~g~-~-~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.+-|.+.+..++... . ++++||||||||.+ +..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 456666776666543 3 57999999999986 34455554
No 435
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.56 E-value=1.5 Score=39.27 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=38.7
Q ss_pred cCceEEEEeCcccccCCCc--HHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHH
Q 007879 270 DDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~ 322 (586)
..+++||+||.-..+..++ .+.+..+++..|....+|+..-..++.+.+.+..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 4799999999998887764 4567777777766666666665677777776654
No 436
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.56 E-value=0.92 Score=49.05 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=20.6
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
.|+-+.+.||+|||||+ ++-++..++.
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 47888999999999997 4555555543
No 437
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=1.4 Score=47.60 Aligned_cols=42 Identities=31% Similarity=0.298 Sum_probs=31.9
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
+++..++|+|||-.-++..-...+++.+..+..+ ++++.=|-
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 5677899999999998877777788888777666 45555553
No 438
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=0.53 Score=47.04 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+|+++.||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999975
No 439
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.37 E-value=1.1 Score=47.22 Aligned_cols=25 Identities=28% Similarity=0.139 Sum_probs=17.5
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+..|+.||.|+|||.++ ..+...+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A-~~lAk~l~ 64 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLA-RIFAKALN 64 (451)
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHHhc
Confidence 34789999999999864 44444443
No 440
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.37 E-value=0.16 Score=45.87 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhcCCc-CccCceEEEEeCcccccC
Q 007879 241 TALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLE 285 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~-~l~~~~~lViDEah~l~~ 285 (586)
+.....++|||+++..|++-....... ....-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 334456799999999887654322111 123446999999999865
No 441
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=90.31 E-value=0.94 Score=41.04 Aligned_cols=53 Identities=21% Similarity=0.486 Sum_probs=43.0
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHH
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (586)
..+.+++|+||.-.=++......+..++..+...-+.++||.-.-+++..++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 45678999999988777777888888999988888889999887777765553
No 442
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.25 E-value=0.75 Score=43.40 Aligned_cols=44 Identities=20% Similarity=0.004 Sum_probs=25.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCC-CCCCCeEEEEEcCcH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTR 206 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~vlil~Ptr 206 (586)
|.-+.+.|++|+|||... +.++....... -.....+++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~-~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLC-LQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHH-HHHHHHhhcccccCCCcceEEEEecCC
Confidence 456679999999999764 33333332221 011124577777654
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.18 E-value=0.37 Score=44.48 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=23.1
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
++++||||||||+. +..++..+.... +.+++.+--..++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~~----~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKNK----THHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhcC----CcEEEEEcCCccc
Confidence 57999999999985 344444443221 2245665554443
No 444
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=3 Score=41.34 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=29.3
Q ss_pred cCCcccCC-CCHHHHHHHHH--cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHh
Q 007879 124 ANSFMELN-LSRPLLRACEA--LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 124 ~~~f~~~~-l~~~l~~~l~~--~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~ 179 (586)
..+|++.| |...+.+.-.. +...+|--++.-.|. --+.+|+.||+|+|||+.+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH
Confidence 34566663 55554433222 233333333332221 1378999999999999853
No 445
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.93 E-value=0.34 Score=47.27 Aligned_cols=43 Identities=30% Similarity=0.261 Sum_probs=29.0
Q ss_pred hcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
..+.+++++|+||||||.. +-.++..+-.. ..+++++-.+.++
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-----DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-----TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-----ccceEEeccccce
Confidence 4467899999999999975 34555544332 1367887777776
No 446
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.92 E-value=0.68 Score=46.56 Aligned_cols=63 Identities=29% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 137 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 137 ~~~l~~~~~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
+..+...|+ +++.+...+..+.. +.+++++|+||||||.. +.++...... ..+++++-.+.+|
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl--l~al~~~i~~-----~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL--LSALLALVAP-----DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHccCCC-----CCcEEEECCccee
Confidence 334444454 55677777666555 56899999999999974 3333333222 2257777777777
No 447
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.87 E-value=2.7 Score=44.76 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceEEEEeCCCChHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
.+-.+..-|---|||. |+.|++..++.. ..+.++.+++.-+..+.-+.+++.. +.++.+-+...-.
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s---~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~--------- 268 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN---IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN--------- 268 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh---hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee---------
Confidence 3556777888999997 478888888763 3466899999999888876665543 2233332211111
Q ss_pred HHhcCCCcEEEECcHHH----HHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC-CCCCcEEEEeecCch
Q 007879 241 TALRSMPDIVVATPGRM----IDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTE 314 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~l----~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~ 314 (586)
.+..|.+.-|+.= .....+...+.-.++.+++|||||-+.. ..+..++-.+ .++.++|..|.|-+.
T Consensus 269 ----k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~Nsg 339 (668)
T PHA03372 269 ----KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTNTT 339 (668)
T ss_pred ----cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCCCC
Confidence 1112333333211 1111222244456789999999997643 3344444433 367888999988643
No 448
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.85 E-value=3.3 Score=48.11 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=34.5
Q ss_pred ceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 272 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
--+||||++|.+.+......+..++...|....+|+.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 348999999998766667788888999998888888887754
No 449
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.72 E-value=3.1 Score=43.51 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=25.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHh-cCCCCCCCeEEEEEc
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVLILT 203 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~-~~~~~~~~~~vlil~ 203 (586)
+..|.-+++.|+||+|||.. ++-+..++. ..+ ..|+++.
T Consensus 191 ~~~g~liviag~pg~GKT~~-al~ia~~~a~~~g-----~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTL-ALNIAENVALREG-----KPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHH-HHHHHHHHHHhCC-----CcEEEEE
Confidence 33456678999999999965 455554433 322 2477776
No 450
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.71 E-value=1.6 Score=43.39 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=19.7
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
+..|+.||.|+||+.. ...+...++..
T Consensus 27 ha~Lf~G~~G~Gk~~~-A~~~a~~llc~ 53 (314)
T PRK07399 27 PAYLFAGPEGVGRKLA-ALCFIEGLLSQ 53 (314)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHcCC
Confidence 4678999999999975 35555655543
No 451
>PRK05973 replicative DNA helicase; Provisional
Probab=89.65 E-value=0.56 Score=44.34 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
-+..|.-++|.|++|+|||+..+-.+.+.+ ..+ .+++|+.-- +-..|+.+.+..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~G-----e~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAM-KSG-----RTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcC-----CeEEEEEEe-CCHHHHHHHHHHc
Confidence 334466788999999999976443444443 322 247776543 2345666666654
No 452
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.58 E-value=0.81 Score=50.38 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=59.0
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 444 (586)
+..+||.++-+....++...|... |.++..+|+++++.+|.....+..+|+.+|+|.|..+-- .-+++...+|.
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKNLGLIIV 319 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-CchhhccEEEE
Confidence 578999999877777666666543 789999999999999999999999999999999987631 23455666553
No 453
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=2.1 Score=44.61 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=30.8
Q ss_pred cCceEEEEeCcccccCCC-------cHHHHHHHHHHC---CCCCcEEEEeecCchhH
Q 007879 270 DDLAVLILDEADRLLELG-------FSAEIHELVRLC---PKRRQTMLFSATLTEDV 316 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~-------~~~~i~~i~~~~---~~~~q~i~~SAT~~~~~ 316 (586)
....+|.|||.|.+...- ....+.+++..+ .++--+|++.||--++.
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 456789999999986421 223445554433 45667899999976654
No 454
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.42 E-value=1.7 Score=49.22 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45688999999999975
No 455
>PRK14701 reverse gyrase; Provisional
Probab=89.32 E-value=2.1 Score=51.97 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~------~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 429 (586)
.+.++||.+||+..+..+...|... ++.+..+||+++..++..++..+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999888877652 467789999999999999999999999999999975
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.30 E-value=1.1 Score=42.91 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=17.2
Q ss_pred HhcCCCeEEEcCCCchhHHH
Q 007879 159 ALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~ 178 (586)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45688999999999999964
No 457
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.29 E-value=1.4 Score=48.20 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=24.4
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
....+++||||+|.|.... ...+..++...|.. -+++|.+|-
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~-tifIL~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSY-AIFILATTE 160 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCC-eEEEEEeCC
Confidence 4678999999999986432 22333444443333 344555553
No 458
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=89.16 E-value=0.35 Score=49.75 Aligned_cols=48 Identities=31% Similarity=0.359 Sum_probs=33.2
Q ss_pred HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 007879 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q 211 (586)
.-...+++++.|.||||||.+ +-+++..+..++. +++|.=|.-+....
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g~-----~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA-IRHLLDQIRARGD-----RAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT------EEEEEEETTHHHHH
T ss_pred cchhhCcEEEECCCCCCHHHH-HHHHHHHHHHcCC-----EEEEEECCchHHHH
Confidence 344568999999999999975 5778877776643 57777777666443
No 459
>PHA00012 I assembly protein
Probab=89.15 E-value=6.3 Score=38.84 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=29.8
Q ss_pred ccCceEEEEeCcccccC---CC--cHHHHHH-HHHHCCCCCcEEEEeecCchhHHHHHH
Q 007879 269 LDDLAVLILDEADRLLE---LG--FSAEIHE-LVRLCPKRRQTMLFSATLTEDVDELIK 321 (586)
Q Consensus 269 l~~~~~lViDEah~l~~---~~--~~~~i~~-i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (586)
...-.++|+||||..++ |+ -...+.+ +........-++++|-.+. .+...++
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR 136 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAR 136 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHH
Confidence 35667999999999875 32 1232333 3333444555667666654 4444443
No 460
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=88.88 E-value=2.2 Score=42.53 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=23.1
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
....+++|||+||.|.... ...+.+.+..-|... ++++.++
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t-~~il~~~ 131 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGV-FIILLCE 131 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCe-EEEEEeC
Confidence 4578899999999985432 223333333333233 4445444
No 461
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.85 E-value=1.9 Score=46.24 Aligned_cols=68 Identities=29% Similarity=0.468 Sum_probs=54.3
Q ss_pred EEEEeccHHHHHHHHHHHhh----c-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----cccc-CCCCCccE
Q 007879 373 VIIFSGTKQAAHRLKILFGL----A-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARG-LDIIGVQT 441 (586)
Q Consensus 373 ~lIF~~s~~~~~~l~~~l~~----~-~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-ldi~~v~~ 441 (586)
+||+++|++.|..+++.+.. . ++.+..++|+++...+...+. .| .+|||+|+- +.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999998877653 2 577899999998887765554 46 999999973 4555 88889998
Q ss_pred EEE
Q 007879 442 VIN 444 (586)
Q Consensus 442 VI~ 444 (586)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 462
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=4.7 Score=43.72 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=23.7
Q ss_pred EEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC
Q 007879 249 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (586)
Q Consensus 249 Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 285 (586)
-|=+-||+++..|+.-. ..+ -++.|||+|.+..
T Consensus 487 YVGAMPGkiIq~LK~v~---t~N-PliLiDEvDKlG~ 519 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVK---TEN-PLILIDEVDKLGS 519 (906)
T ss_pred eeccCChHHHHHHHhhC---CCC-ceEEeehhhhhCC
Confidence 34467999999997632 122 2789999999873
No 463
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=88.61 E-value=0.65 Score=54.78 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=43.3
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
.+.+++|.|..|||||.+...-++..++... +.....+|||+.|+..+..+...+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-PLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-CCChhHeeeeeccHHHHHHHHHHHHH
Confidence 4678999999999999886666666666543 23455799999999988877766554
No 464
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=1.5 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=24.5
Q ss_pred EEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC
Q 007879 250 VVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287 (586)
Q Consensus 250 li~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~ 287 (586)
+=+-||+++..|......+ -++++||+|.|...-
T Consensus 400 IGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~ 433 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSF 433 (782)
T ss_pred cccCChHHHHHHHHhCCcC----CeEEeechhhccCCC
Confidence 3356999999888753222 279999999998643
No 465
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.48 E-value=4 Score=41.44 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=16.9
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
..|+.||.|+|||.++ ..+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhc
Confidence 4689999999999753 44444443
No 466
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=88.47 E-value=1.5 Score=45.66 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=47.2
Q ss_pred eEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 007879 372 KVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 428 (586)
-.|||++|++.+..+.+.|.. .++.+..|.|+|....+++++.+ ...|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 479999999999999998864 48999999999999999998876 668999997
No 467
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.38 E-value=2.2 Score=40.21 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHHhcCC-CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 157 PLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 157 ~~il~g~-~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
+.+..|+ -+.++|+-|||||...- ++...+.++.. .-++|--||...+.-...++..+
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R--al~~s~~~d~~---~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR--ALLASLNEDQV---AVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH--HHHHhcCCCce---EEEEecCcchhHHHHHHHHHHHh
Confidence 3344566 45599999999998643 33333333321 11334445544444334444443
No 468
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.19 E-value=5.4 Score=40.05 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=23.7
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
....+++||||||.|.... ...+.+.+..-|.... +++.++
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~-~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTT-AILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCce-EEEEeC
Confidence 4578899999999985432 3334444444333333 444444
No 469
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=88.14 E-value=0.6 Score=42.22 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=27.0
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCC-CCcEEEEee
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSA 310 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~-~~q~i~~SA 310 (586)
.+.+++++||...-++......+..++..+.. ..++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 46689999999998876666666555554433 355555544
No 470
>PF12846 AAA_10: AAA-like domain
Probab=88.08 E-value=0.71 Score=45.58 Aligned_cols=43 Identities=33% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
++++++.|+||||||.+. ..++..+...+ ..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~-~~l~~~~~~~g-----~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL-KNLLEQLIRRG-----PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHcC-----CCEEEEcCCchHHH
Confidence 467899999999999765 45555555543 35888877766644
No 471
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.06 E-value=1.9 Score=44.19 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.7
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+.++++||.|+|||..
T Consensus 40 ~~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 40 QALLFCGPRGVGKTTC 55 (367)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3678999999999975
No 472
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.06 E-value=1.9 Score=38.91 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=28.7
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
+.+.+++++||.-.-++......+..++..+... .+++++..
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh 155 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITH 155 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567899999999888876667776766665443 44555433
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.05 E-value=0.71 Score=45.93 Aligned_cols=19 Identities=42% Similarity=0.399 Sum_probs=16.5
Q ss_pred hcCCCeEEEcCCCchhHHH
Q 007879 160 LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~ 178 (586)
..+.+++++|+||||||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3578999999999999974
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.04 E-value=0.66 Score=46.91 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.0
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
+..++++||||||||+. +..++..+.... ..+++.+--..++
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~~----~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKNA----AGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcCC----CCEEEEEcCChhh
Confidence 56788999999999975 344444443221 2356666555554
No 475
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.94 E-value=11 Score=39.65 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=65.3
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c-cccCCCCCc
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIGV 439 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~v 439 (586)
+..+||.++|++.+..+...+... +++..+++|+.+...+.+.++ .-++|+|||+- + .--+++..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 456999999999999998877654 466889999998887766554 24689999973 2 345778899
Q ss_pred cEEEE--------eCCCCChhHHHHHhhhccc
Q 007879 440 QTVIN--------YACPRDLTSYVHRVGRTAR 463 (586)
Q Consensus 440 ~~VI~--------~~~p~s~~~y~Qr~GR~gR 463 (586)
+++|. .++-......++.++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99884 2223345566676667665
No 476
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=4.7 Score=38.12 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.8
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
-+.+++.+|+|+|||+++
T Consensus 211 pkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCceEEeCCCCCchhHHH
Confidence 368999999999999974
No 477
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.87 E-value=0.7 Score=50.74 Aligned_cols=48 Identities=23% Similarity=0.142 Sum_probs=37.8
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
.++++.||||||||..+++|-+..+ + ..++|+=|.-++........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~---~-----gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF---K-----GSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC---C-----CCEEEEeCCchHHHHHHHHHHh
Confidence 4889999999999999999986543 1 2489999999997766555554
No 478
>PRK09354 recA recombinase A; Provisional
Probab=87.84 E-value=2.6 Score=42.33 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
|+-+.+.||+|||||.. ++.++...... +.+++++-.-..+-.
T Consensus 60 G~IteI~G~~GsGKTtL-al~~~~~~~~~-----G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTL-ALHAIAEAQKA-----GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHHc-----CCcEEEECCccchHH
Confidence 45667999999999976 45555444433 235888877666643
No 479
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.78 E-value=6 Score=40.41 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=74.9
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc-Cc-HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-PT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~-Pt-r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (586)
++.+|=-|||||++. --+..++.+... ++++++ -+ |..| ++.++.++...++.+.....+.++..
T Consensus 103 ImmvGLQGsGKTTt~-~KLA~~lkk~~~-----kvllVaaD~~RpAA---~eQL~~La~q~~v~~f~~~~~~~Pv~---- 169 (451)
T COG0541 103 ILMVGLQGSGKTTTA-GKLAKYLKKKGK-----KVLLVAADTYRPAA---IEQLKQLAEQVGVPFFGSGTEKDPVE---- 169 (451)
T ss_pred EEEEeccCCChHhHH-HHHHHHHHHcCC-----ceEEEecccCChHH---HHHHHHHHHHcCCceecCCCCCCHHH----
Confidence 568999999999873 444444444222 344443 33 3443 34466666656665433211111111
Q ss_pred hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc-CCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHH
Q 007879 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (586)
Q Consensus 243 ~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~ 321 (586)
.....+.. +....++++|||=|-++. +...-..+..+...+.+.--++++=|+...+......
T Consensus 170 -------------Iak~al~~---ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~ 233 (451)
T COG0541 170 -------------IAKAALEK---AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK 233 (451)
T ss_pred -------------HHHHHHHH---HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH
Confidence 01112221 223457899999998875 4446677777777777777777888888877766665
Q ss_pred Hh
Q 007879 322 LS 323 (586)
Q Consensus 322 ~~ 323 (586)
.+
T Consensus 234 aF 235 (451)
T COG0541 234 AF 235 (451)
T ss_pred HH
Confidence 44
No 480
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.55 E-value=2.7 Score=44.97 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=29.5
Q ss_pred eEEEEeCcccccCC-----C--cHHHHHHHHHHCC---CCCcEEEEeecCchhHHH
Q 007879 273 AVLILDEADRLLEL-----G--FSAEIHELVRLCP---KRRQTMLFSATLTEDVDE 318 (586)
Q Consensus 273 ~~lViDEah~l~~~-----~--~~~~i~~i~~~~~---~~~q~i~~SAT~~~~~~~ 318 (586)
.++.+||+|.+... + -...+.+++..+. ....++++-||-.++..+
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID 584 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMID 584 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcC
Confidence 78999999987521 1 2233445555443 345688999998776543
No 481
>PRK08840 replicative DNA helicase; Provisional
Probab=87.54 E-value=5.9 Score=41.78 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=54.4
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEE-eCCCChH
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTK 237 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~-~~~~~~~ 237 (586)
+..|.-+++.|.||.|||..+ +-+...+.... +..|+|+..- .-..|+...+... ..++...-+ .|..+..
T Consensus 214 ~~~g~LiviaarPg~GKTafa-lnia~~~a~~~----~~~v~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFA-MNLCENAAMDQ----DKPVLIFSLE-MPAEQLMMRMLAS--LSRVDQTKIRTGQLDDE 285 (464)
T ss_pred CCCCceEEEEeCCCCchHHHH-HHHHHHHHHhC----CCeEEEEecc-CCHHHHHHHHHHh--hCCCCHHHHhcCCCCHH
Confidence 334556778999999999754 44443332211 1246766543 2234444443321 122222111 2222222
Q ss_pred HHH------HHhcCCCcEEEE-----CcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 238 MQE------TALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 238 ~~~------~~~~~~~~Ili~-----Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
... ..+.....+.|. |+..+...++... .....+++||||=.|.|.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 211 112122344443 3334443333211 111247899999988875
No 482
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=87.50 E-value=1 Score=48.68 Aligned_cols=70 Identities=20% Similarity=0.070 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-CCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
.+..-|..|....+..+-.|+++|+|+|||++ .+-++..++.... ....-.+||+|-|...+.|....+.
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~v-tlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLV-TLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceee-hHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 34566999999999999999999999999987 4666676665442 1223459999999999888755544
No 483
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=87.47 E-value=1.2 Score=49.49 Aligned_cols=71 Identities=21% Similarity=0.191 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.+++-|.+++... ...++|.|..|||||.+..--+ .++.... +..+..+|.++=|+-.|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ri-a~li~~~-~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERI-AYLIAAG-GVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHH-HHHHHcC-CcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999998765 5678899999999998743333 3444332 22344699999999999999999888765
No 484
>PRK13695 putative NTPase; Provisional
Probab=87.45 E-value=5 Score=36.01 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=16.2
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.+++.|++|+|||+.. ..++..+
T Consensus 2 ~i~ltG~~G~GKTTll-~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLV-LKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 3679999999999753 3344443
No 485
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.42 E-value=0.52 Score=45.67 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCeEEEcCCCchhHHHh
Q 007879 153 AACIPLALTGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 153 ~~~i~~il~g~~~lv~~~TGsGKT~~~ 179 (586)
..++..+..|+++++.|++|+|||..+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344556667899999999999999764
No 486
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.37 E-value=2.6 Score=44.82 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHhc-----CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 154 ACIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 154 ~~i~~il~-----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
..+..++. |.-+++.+|+|+|||+.. +..+.....++. ++++++ .-+-..|+.+.+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~-~~f~~~~~~~ge-----~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLV-SKFLENACANKE-----RAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHH-HHHHHHHHHCCC-----eEEEEE-eeCCHHHHHHHHHHc
Confidence 34555555 456889999999999864 444444433322 577776 456667777777765
No 487
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.35 E-value=2.1 Score=38.34 Aligned_cols=52 Identities=17% Similarity=0.361 Sum_probs=39.5
Q ss_pred ccCceEEEEeCcccccCCCc--HHHHHHHHHHCCCCCcEEEEeecCchhHHHHH
Q 007879 269 LDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 320 (586)
-..+++||+||+-..++.++ ...+..+++..|...-+|+..-.+|+.+.+.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 35789999999998888775 45677788887777777777667777776554
No 488
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.33 E-value=7.3 Score=39.58 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
.+.+.+.|+.|.|||.. +-++-..+.... +.++ ..-.....+++.+..+. |+...
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~---k~R~----HFh~Fm~~vh~~l~~~~-----------~~~~~----- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKR---KRRV----HFHEFMLDVHSRLHQLR-----------GQDDP----- 116 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccc---cccc----cccHHHHHHHHHHHHHh-----------CCCcc-----
Confidence 46788999999999974 333333222111 1122 33466667777777643 11110
Q ss_pred HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHH-CCCCCcEEEEeecCchhH
Q 007879 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL-CPKRRQTMLFSATLTEDV 316 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~-~~~~~q~i~~SAT~~~~~ 316 (586)
-..+.+.+ .....+|.+||.|.- +.+-...+..++.. +....-+|+.|-++|.++
T Consensus 117 ------------l~~va~~l-------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 ------------LPQVADEL-------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ------------HHHHHHHH-------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 00112222 234568999999953 22223334444433 344555666676766543
No 489
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.32 E-value=6.7 Score=40.60 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=52.9
Q ss_pred eEEEEeccHHHHHHHHHHHh----hcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc------ccccCCCCCccE
Q 007879 372 KVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------AARGLDIIGVQT 441 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~----~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~v~~ 441 (586)
-.+|.|+|++.+..+....+ ..|+++..+||+.+.-++...++ -..-|+|||+- --.++|+.+|.+
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 35677899999988865544 44889999999999998877776 34579999972 136788888888
Q ss_pred EEE
Q 007879 442 VIN 444 (586)
Q Consensus 442 VI~ 444 (586)
+|+
T Consensus 374 LV~ 376 (731)
T KOG0339|consen 374 LVL 376 (731)
T ss_pred EEE
Confidence 664
No 490
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.05 E-value=4.3 Score=44.24 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=55.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.++||.|+|+..|.++++.+.. .++.+..++|+.+...+...+ ....+|+||| +.+.. .+++.+
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~ar--GIDip~ 325 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLER----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAAR--GLHIDG 325 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhc--CCCccC
Confidence 34699999999999998888875 378899999998876654433 3457999999 33334 577888
Q ss_pred ceEEEEeCc
Q 007879 272 LAVLILDEA 280 (586)
Q Consensus 272 ~~~lViDEa 280 (586)
+++||.-..
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 888886443
No 491
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.88 E-value=3.6 Score=42.55 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=58.0
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-------ccccCCC
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-------AARGLDI 436 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~Gldi 436 (586)
....+|||.|+|+..+-.+....+. ..+.++..-|+++-..+..+++ ...+|+|||+- -+.++|+
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~l 325 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNL 325 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCccc
Confidence 3456899999999988877766543 3689999999999999888886 56799999973 2578888
Q ss_pred CCccEEEE
Q 007879 437 IGVQTVIN 444 (586)
Q Consensus 437 ~~v~~VI~ 444 (586)
.++.++|.
T Consensus 326 dsiEVLvl 333 (691)
T KOG0338|consen 326 DSIEVLVL 333 (691)
T ss_pred cceeEEEe
Confidence 88887774
No 492
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.80 E-value=19 Score=33.03 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c-cccCCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIG 438 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 438 (586)
.+.++||.+++...+......+.. .++.+..++|+.+......... +...|+|+|.- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999988877665543 4778889999888766543332 67789999952 2 22356677
Q ss_pred ccEEEEe
Q 007879 439 VQTVINY 445 (586)
Q Consensus 439 v~~VI~~ 445 (586)
++++|.=
T Consensus 144 l~~lIvD 150 (203)
T cd00268 144 VKYLVLD 150 (203)
T ss_pred CCEEEEe
Confidence 8887743
No 493
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=86.77 E-value=3.9 Score=46.95 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=64.7
Q ss_pred ccCCceEEEEeccHHHHH----HHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCCCCCccE
Q 007879 367 KTFTSKVIIFSGTKQAAH----RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQT 441 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~----~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gldi~~v~~ 441 (586)
-..+..|.|.+||.-.|+ .+.+.|....+++..++.-.+.+++..+++...+|+++|+|.|-.+ +.++-+.+...
T Consensus 640 V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGL 719 (1139)
T COG1197 640 VMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGL 719 (1139)
T ss_pred hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCe
Confidence 344678999999965555 4555556668899999999999999999999999999999999765 78888888888
Q ss_pred EEE
Q 007879 442 VIN 444 (586)
Q Consensus 442 VI~ 444 (586)
||.
T Consensus 720 lII 722 (1139)
T COG1197 720 LII 722 (1139)
T ss_pred EEE
Confidence 874
No 494
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=86.69 E-value=2.3 Score=46.56 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=27.3
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
+.+-+++++||+-.-++......+.+.+....+.+-+|+.|
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiit 525 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45567899999998887776777766666554444444443
No 495
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=86.67 E-value=1.4 Score=39.50 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=29.9
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
+.+.+++++||--.-++......+..++..+.....+++++..
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4567899999999888877777777776665433335555544
No 496
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.60 E-value=1.7 Score=38.92 Aligned_cols=42 Identities=38% Similarity=0.411 Sum_probs=30.3
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
..+.+++++||--.-++......+..++..+... .+++++..
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh 153 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAH 153 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 3566899999999888877777777777666544 45555543
No 497
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=7.1 Score=43.34 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=24.5
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
.+++.||||.|||.. .-+|...+..+. ..+|-.--.+-.
T Consensus 523 sFlF~GPTGVGKTEL--AkaLA~~Lfg~e-----~aliR~DMSEy~ 561 (786)
T COG0542 523 SFLFLGPTGVGKTEL--AKALAEALFGDE-----QALIRIDMSEYM 561 (786)
T ss_pred EEEeeCCCcccHHHH--HHHHHHHhcCCC-----ccceeechHHHH
Confidence 578999999999975 333444444333 256666655543
No 498
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.54 E-value=0.54 Score=48.90 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 156 i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
+|.-...+++++.|+||||||.. +..++..+...+. +++|+=|..++..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~~~-----~~vi~D~kg~~~~ 84 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRARGD-----RAIIYDPNGGFVS 84 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhcCC-----CEEEEeCCcchhH
Confidence 34444568999999999999975 4455555554433 5899999888754
No 499
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=3.3 Score=38.95 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=27.6
Q ss_pred CceEEEEeCcccccCCC----------cHHHHHHHHHHCC---CCCcEEEEeecCchh
Q 007879 271 DLAVLILDEADRLLELG----------FSAEIHELVRLCP---KRRQTMLFSATLTED 315 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~----------~~~~i~~i~~~~~---~~~q~i~~SAT~~~~ 315 (586)
...+|.|||.|.+.... ....+.++++.+. ..-++-++.||-.-+
T Consensus 264 aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 45679999999886432 2344555555543 445666677775543
No 500
>PRK04328 hypothetical protein; Provisional
Probab=86.50 E-value=0.9 Score=43.61 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=0.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
+-.|..+++.|++|+|||...+..+.+.+..... ++++. +.+-..++.+.+..+.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~------~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEP------GVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCc------EEEEE-eeCCHHHHHHHHHHcC
Done!