Query 007879
Match_columns 586
No_of_seqs 483 out of 3690
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.7E-61 1.3E-65 502.9 45.4 363 121-488 52-419 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 5.4E-58 1.9E-62 477.6 42.1 369 124-498 36-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 2.4E-57 8.1E-62 473.9 42.3 365 121-489 11-395 (417)
4 1s2m_A Putative ATP-dependent 100.0 1E-55 3.4E-60 459.0 43.2 365 124-496 20-384 (400)
5 3eiq_A Eukaryotic initiation f 100.0 2.5E-56 8.4E-61 465.8 37.7 369 123-497 38-407 (414)
6 3fht_A ATP-dependent RNA helic 100.0 7E-55 2.4E-59 454.4 41.6 368 122-497 22-400 (412)
7 1xti_A Probable ATP-dependent 100.0 1.9E-54 6.4E-59 448.0 43.7 365 125-496 8-377 (391)
8 3pey_A ATP-dependent RNA helic 100.0 2.5E-54 8.4E-59 447.6 43.1 361 124-494 4-375 (395)
9 3sqw_A ATP-dependent RNA helic 100.0 6.7E-55 2.3E-59 472.6 39.1 364 132-495 28-416 (579)
10 3fmp_B ATP-dependent RNA helic 100.0 1E-56 3.5E-61 476.9 21.1 365 123-495 90-465 (479)
11 1hv8_A Putative ATP-dependent 100.0 1.2E-53 4E-58 438.1 43.0 359 124-496 5-364 (367)
12 3i5x_A ATP-dependent RNA helic 100.0 3.1E-54 1.1E-58 467.3 39.6 364 132-495 79-467 (563)
13 1fuu_A Yeast initiation factor 100.0 1.6E-55 5.5E-60 456.5 23.4 365 124-495 20-384 (394)
14 2z0m_A 337AA long hypothetical 100.0 6.9E-52 2.4E-56 419.8 37.9 335 132-490 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.7E-51 5.8E-56 441.8 37.3 342 128-486 24-383 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 3.8E-50 1.3E-54 427.3 35.0 341 125-488 2-354 (523)
17 3oiy_A Reverse gyrase helicase 100.0 2.8E-50 9.7E-55 419.5 29.6 347 135-511 9-399 (414)
18 3fho_A ATP-dependent RNA helic 100.0 3.6E-51 1.2E-55 435.5 20.8 361 126-496 120-490 (508)
19 3l9o_A ATP-dependent RNA helic 100.0 5.3E-50 1.8E-54 456.3 29.7 344 125-488 162-609 (1108)
20 1tf5_A Preprotein translocase 100.0 1.1E-46 3.7E-51 403.6 37.2 325 142-479 79-547 (844)
21 4a2p_A RIG-I, retinoic acid in 100.0 1E-46 3.4E-51 408.5 29.5 336 144-482 4-513 (556)
22 2ykg_A Probable ATP-dependent 100.0 9.6E-47 3.3E-51 419.1 25.9 346 137-485 3-524 (696)
23 4ddu_A Reverse gyrase; topoiso 100.0 4.8E-46 1.6E-50 423.7 31.9 345 142-514 74-529 (1104)
24 3tbk_A RIG-I helicase domain; 100.0 8.9E-46 3E-50 400.9 28.6 333 147-485 4-515 (555)
25 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-45 3.8E-50 414.1 29.2 337 142-481 243-753 (797)
26 2va8_A SSO2462, SKI2-type heli 100.0 7.2E-45 2.5E-49 404.0 35.4 336 124-478 7-409 (715)
27 2zj8_A DNA helicase, putative 100.0 2.1E-45 7.2E-50 408.0 29.0 335 126-478 2-388 (720)
28 1nkt_A Preprotein translocase 100.0 1.7E-43 5.7E-48 377.9 41.0 327 142-481 107-621 (922)
29 2fsf_A Preprotein translocase 100.0 1.4E-44 4.9E-49 385.9 31.7 324 143-479 71-585 (853)
30 2p6r_A Afuhel308 helicase; pro 100.0 4.1E-45 1.4E-49 404.5 28.4 335 126-479 2-390 (702)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 2E-45 6.8E-50 419.2 25.4 342 141-512 52-490 (1054)
32 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-44 4.8E-49 409.1 27.7 338 141-481 242-753 (936)
33 2xgj_A ATP-dependent RNA helic 100.0 2.3E-43 8E-48 398.4 36.4 325 142-487 82-510 (1010)
34 1wp9_A ATP-dependent RNA helic 100.0 7.8E-43 2.7E-47 371.6 34.3 324 147-479 9-477 (494)
35 4a4z_A Antiviral helicase SKI2 100.0 4.1E-42 1.4E-46 388.3 37.2 326 143-488 36-505 (997)
36 4gl2_A Interferon-induced heli 100.0 3.9E-44 1.3E-48 398.3 18.7 325 147-476 7-517 (699)
37 1gm5_A RECG; helicase, replica 100.0 6.9E-42 2.4E-46 374.5 25.4 324 134-482 356-702 (780)
38 4f92_B U5 small nuclear ribonu 100.0 1.2E-40 4.1E-45 392.0 33.6 346 132-486 911-1317(1724)
39 2eyq_A TRCF, transcription-rep 100.0 5.5E-40 1.9E-44 376.4 35.5 324 130-478 586-923 (1151)
40 2oca_A DAR protein, ATP-depend 100.0 1.5E-40 5E-45 355.6 26.1 312 147-475 113-453 (510)
41 2whx_A Serine protease/ntpase/ 100.0 3.4E-42 1.2E-46 370.6 11.5 313 130-488 155-492 (618)
42 4f92_B U5 small nuclear ribonu 100.0 3.7E-40 1.3E-44 387.9 27.6 338 144-486 76-482 (1724)
43 2jlq_A Serine protease subunit 100.0 5.3E-41 1.8E-45 351.3 17.0 287 144-476 1-310 (451)
44 2xau_A PRE-mRNA-splicing facto 100.0 1.2E-39 4E-44 359.6 23.4 337 123-479 70-445 (773)
45 2fwr_A DNA repair protein RAD2 100.0 1.6E-39 5.5E-44 344.2 20.8 295 147-477 93-454 (472)
46 3o8b_A HCV NS3 protease/helica 100.0 3.2E-40 1.1E-44 351.4 15.1 289 147-491 217-532 (666)
47 3jux_A Protein translocase sub 100.0 4.3E-36 1.5E-40 313.8 40.9 331 143-491 72-608 (822)
48 1yks_A Genome polyprotein [con 100.0 1.4E-40 4.8E-45 346.4 6.2 278 158-489 4-314 (440)
49 2wv9_A Flavivirin protease NS2 100.0 1.8E-39 6.1E-44 351.5 14.1 305 139-488 202-547 (673)
50 2z83_A Helicase/nucleoside tri 100.0 1.8E-38 6.1E-43 332.6 14.8 273 156-477 15-313 (459)
51 3fe2_A Probable ATP-dependent 100.0 1.9E-36 6.6E-41 290.7 24.5 213 121-334 25-239 (242)
52 2v6i_A RNA helicase; membrane, 100.0 4.6E-37 1.6E-41 319.3 21.2 269 161-474 1-288 (431)
53 3dmq_A RNA polymerase-associat 100.0 1.1E-36 3.7E-41 344.9 25.2 336 146-489 152-625 (968)
54 3ber_A Probable ATP-dependent 100.0 1.5E-35 5E-40 285.2 25.0 207 123-332 41-247 (249)
55 3fmo_B ATP-dependent RNA helic 100.0 1.1E-35 3.9E-40 293.5 22.3 206 122-333 89-298 (300)
56 3rc3_A ATP-dependent RNA helic 100.0 2E-35 6.8E-40 318.7 26.0 313 133-495 130-462 (677)
57 3h1t_A Type I site-specific re 100.0 7.4E-36 2.5E-40 324.4 22.8 304 147-466 178-545 (590)
58 1vec_A ATP-dependent RNA helic 100.0 1.2E-34 4.1E-39 271.4 25.4 202 125-330 3-205 (206)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 2.9E-35 9.8E-40 284.8 21.8 220 123-343 21-250 (253)
60 3iuy_A Probable ATP-dependent 100.0 3.6E-35 1.2E-39 279.5 21.8 209 121-331 15-227 (228)
61 2pl3_A Probable ATP-dependent 100.0 9.7E-35 3.3E-39 278.0 24.1 209 124-333 24-233 (236)
62 3bor_A Human initiation factor 100.0 6.3E-35 2.1E-39 279.2 22.4 206 123-332 28-234 (237)
63 3ly5_A ATP-dependent RNA helic 100.0 7.4E-35 2.5E-39 282.6 22.7 206 122-327 49-257 (262)
64 1q0u_A Bstdead; DEAD protein, 100.0 4.7E-35 1.6E-39 276.8 20.7 206 124-333 3-212 (219)
65 2oxc_A Probable ATP-dependent 100.0 1.6E-34 5.5E-39 275.1 23.4 206 122-332 21-228 (230)
66 2gxq_A Heat resistant RNA depe 100.0 2.2E-34 7.4E-39 269.9 23.4 204 126-332 2-205 (207)
67 1z63_A Helicase of the SNF2/RA 100.0 2.2E-34 7.4E-39 307.1 26.2 313 147-478 37-454 (500)
68 1qde_A EIF4A, translation init 100.0 4.4E-34 1.5E-38 271.2 23.5 206 123-333 12-217 (224)
69 1t6n_A Probable ATP-dependent 100.0 1.8E-33 6E-38 266.2 22.2 205 123-331 12-219 (220)
70 2ipc_A Preprotein translocase 100.0 1.5E-30 5.1E-35 277.1 45.0 330 143-491 76-719 (997)
71 1z3i_X Similar to RAD54-like; 100.0 9.6E-32 3.3E-36 292.9 35.8 322 147-477 55-528 (644)
72 3mwy_W Chromo domain-containin 100.0 5.2E-33 1.8E-37 310.5 24.8 330 147-489 236-698 (800)
73 3dkp_A Probable ATP-dependent 100.0 4.2E-33 1.4E-37 268.3 19.4 210 123-334 23-242 (245)
74 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.2E-32 2.1E-36 303.3 28.8 327 134-475 251-707 (1038)
75 1c4o_A DNA nucleotide excision 100.0 7.4E-28 2.5E-32 261.9 25.3 118 369-487 438-560 (664)
76 2d7d_A Uvrabc system protein B 100.0 7.1E-27 2.4E-31 254.0 25.5 117 369-486 444-565 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 9.8E-27 3.4E-31 208.3 19.9 155 338-495 6-160 (163)
78 2rb4_A ATP-dependent RNA helic 99.9 3.8E-26 1.3E-30 207.2 19.8 158 339-498 5-168 (175)
79 3eaq_A Heat resistant RNA depe 99.9 7.4E-26 2.5E-30 211.5 21.7 146 354-499 15-160 (212)
80 2p6n_A ATP-dependent RNA helic 99.9 2.5E-26 8.5E-31 210.6 17.9 165 321-489 9-174 (191)
81 1t5i_A C_terminal domain of A 99.9 3.3E-26 1.1E-30 206.5 18.0 154 340-496 4-158 (172)
82 1fuk_A Eukaryotic initiation f 99.9 6.5E-26 2.2E-30 203.5 17.5 154 341-496 3-156 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.4E-25 4.8E-30 204.8 15.8 150 338-490 16-166 (185)
84 3i32_A Heat resistant RNA depe 99.9 5.3E-25 1.8E-29 215.2 20.8 155 342-499 3-157 (300)
85 3b6e_A Interferon-induced heli 99.9 7.2E-25 2.5E-29 206.4 10.9 168 143-311 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.8 3.1E-26 1.1E-30 206.6 0.0 144 355-498 15-158 (170)
87 2vl7_A XPD; helicase, unknown 99.9 9.1E-23 3.1E-27 217.6 22.2 128 143-284 4-188 (540)
88 3llm_A ATP-dependent RNA helic 99.9 2.3E-22 7.8E-27 191.5 15.6 181 134-327 48-231 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 2.4E-20 8.3E-25 199.7 30.8 280 147-449 3-473 (551)
90 1rif_A DAR protein, DNA helica 99.9 2.7E-22 9.2E-27 196.7 11.4 154 147-316 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 2.8E-19 9.4E-24 169.8 15.4 138 147-315 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 3.6E-18 1.2E-22 184.0 23.0 82 147-233 3-88 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 2.6E-19 8.9E-24 172.9 11.3 123 355-477 95-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4.2E-09 1.4E-13 113.4 9.5 146 149-311 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.4 2.2E-06 7.5E-11 82.6 12.5 121 355-480 108-240 (328)
96 3upu_A ATP-dependent DNA helic 98.2 5E-06 1.7E-10 86.6 11.0 138 142-309 20-162 (459)
97 3e1s_A Exodeoxyribonuclease V, 98.2 4.3E-06 1.5E-10 89.0 10.3 125 147-309 189-313 (574)
98 2gk6_A Regulator of nonsense t 98.2 2.1E-05 7.1E-10 85.0 14.9 69 145-218 178-246 (624)
99 4b3f_X DNA-binding protein smu 98.1 7.2E-06 2.5E-10 89.2 9.6 66 147-218 189-255 (646)
100 2xzl_A ATP-dependent helicase 98.1 2.6E-05 9E-10 86.2 13.3 70 145-219 358-427 (802)
101 2wjy_A Regulator of nonsense t 98.0 3.8E-05 1.3E-09 84.8 14.4 68 146-218 355-422 (800)
102 3lfu_A DNA helicase II; SF1 he 98.0 0.00041 1.4E-08 75.6 21.1 72 146-221 8-79 (647)
103 2o0j_A Terminase, DNA packagin 97.4 0.001 3.5E-08 66.5 11.6 72 147-222 163-234 (385)
104 3cpe_A Terminase, DNA packagin 97.1 0.0048 1.6E-07 66.1 14.6 146 147-314 163-315 (592)
105 3ec2_A DNA replication protein 96.9 0.0028 9.6E-08 56.3 8.4 30 149-178 16-54 (180)
106 2orw_A Thymidine kinase; TMTK, 96.8 0.0044 1.5E-07 55.3 8.9 39 162-206 3-41 (184)
107 3vkw_A Replicase large subunit 96.8 0.0047 1.6E-07 62.5 9.9 107 164-311 163-269 (446)
108 2b8t_A Thymidine kinase; deoxy 96.7 0.0015 5E-08 60.2 5.1 91 162-284 12-102 (223)
109 2kjq_A DNAA-related protein; s 96.7 0.0013 4.4E-08 56.6 4.3 43 270-313 82-125 (149)
110 1xx6_A Thymidine kinase; NESG, 96.7 0.0026 8.8E-08 57.1 6.3 39 162-206 8-46 (191)
111 3te6_A Regulatory protein SIR3 96.4 0.026 9E-07 54.7 12.3 27 162-189 45-71 (318)
112 1l8q_A Chromosomal replication 96.3 0.014 4.8E-07 57.3 9.7 17 162-178 37-53 (324)
113 3kl4_A SRP54, signal recogniti 96.3 0.023 8E-07 57.6 11.3 130 164-323 99-234 (433)
114 3u4q_A ATP-dependent helicase/ 96.3 0.0054 1.9E-07 71.5 7.4 71 147-219 10-80 (1232)
115 1pjr_A PCRA; DNA repair, DNA r 96.2 0.0076 2.6E-07 66.2 7.9 82 146-231 10-93 (724)
116 1uaa_A REP helicase, protein ( 96.1 0.0054 1.8E-07 66.9 5.8 82 147-232 2-86 (673)
117 2j9r_A Thymidine kinase; TK1, 96.0 0.007 2.4E-07 54.8 5.2 40 162-207 28-67 (214)
118 2orv_A Thymidine kinase; TP4A 95.8 0.013 4.3E-07 53.6 6.2 39 162-206 19-57 (234)
119 1a5t_A Delta prime, HOLB; zinc 95.7 0.021 7.1E-07 56.3 7.6 41 148-189 3-50 (334)
120 3dm5_A SRP54, signal recogniti 95.6 0.048 1.6E-06 55.3 10.3 130 164-323 102-235 (443)
121 1d2n_A N-ethylmaleimide-sensit 95.5 0.11 3.9E-06 49.2 11.9 17 163-179 65-81 (272)
122 2w58_A DNAI, primosome compone 95.4 0.055 1.9E-06 48.7 8.9 24 163-187 55-78 (202)
123 2zpa_A Uncharacterized protein 95.4 0.025 8.7E-07 60.2 7.3 113 147-313 175-289 (671)
124 2z4s_A Chromosomal replication 95.4 0.078 2.7E-06 54.3 10.9 17 162-178 130-146 (440)
125 3e2i_A Thymidine kinase; Zn-bi 95.3 0.024 8.1E-07 51.2 5.9 40 162-207 28-67 (219)
126 1w4r_A Thymidine kinase; type 95.2 0.019 6.5E-07 51.1 5.0 38 162-205 20-57 (195)
127 3u61_B DNA polymerase accessor 95.2 0.079 2.7E-06 51.8 10.0 38 270-307 104-141 (324)
128 2chg_A Replication factor C sm 95.2 0.17 5.9E-06 45.8 11.7 39 270-309 101-139 (226)
129 1sxj_E Activator 1 40 kDa subu 95.1 0.2 7E-06 49.4 12.9 41 270-311 133-173 (354)
130 2p65_A Hypothetical protein PF 95.0 0.13 4.4E-06 45.2 10.1 17 162-178 43-59 (187)
131 3h4m_A Proteasome-activating n 94.9 0.093 3.2E-06 50.1 9.3 53 124-178 13-67 (285)
132 2v1u_A Cell division control p 94.8 0.053 1.8E-06 54.3 7.8 17 162-178 44-60 (387)
133 3bos_A Putative DNA replicatio 94.8 0.036 1.2E-06 51.3 6.0 18 161-178 51-68 (242)
134 2qby_B CDC6 homolog 3, cell di 94.7 0.072 2.5E-06 53.4 8.4 24 163-187 46-69 (384)
135 3syl_A Protein CBBX; photosynt 94.6 0.024 8.4E-07 55.0 4.4 17 163-179 68-84 (309)
136 4b4t_J 26S protease regulatory 94.6 0.069 2.4E-06 53.3 7.5 53 123-178 143-198 (405)
137 3eie_A Vacuolar protein sortin 94.5 0.063 2.2E-06 52.5 7.1 49 124-178 14-67 (322)
138 1jbk_A CLPB protein; beta barr 94.4 0.14 4.6E-06 45.2 8.8 25 162-187 43-67 (195)
139 4b4t_M 26S protease regulatory 94.3 0.038 1.3E-06 56.0 5.1 53 123-178 176-231 (434)
140 2qp9_X Vacuolar protein sortin 93.8 0.13 4.5E-06 50.9 7.9 18 162-179 84-101 (355)
141 1fnn_A CDC6P, cell division co 93.7 0.096 3.3E-06 52.5 6.9 15 164-178 46-60 (389)
142 3cf0_A Transitional endoplasmi 93.7 0.18 6E-06 48.7 8.4 54 124-178 11-65 (301)
143 4b4t_H 26S protease regulatory 93.7 0.14 4.8E-06 51.9 7.8 53 123-178 204-259 (467)
144 4b4t_L 26S protease subunit RP 93.7 0.08 2.8E-06 53.7 6.1 53 123-178 176-231 (437)
145 1njg_A DNA polymerase III subu 93.4 0.54 1.8E-05 43.0 11.1 15 164-178 47-61 (250)
146 1g5t_A COB(I)alamin adenosyltr 93.3 0.58 2E-05 41.5 10.3 51 270-320 119-171 (196)
147 1gm5_A RECG; helicase, replica 93.3 0.27 9.3E-06 53.9 9.9 79 370-448 417-500 (780)
148 2qby_A CDC6 homolog 1, cell di 93.2 0.23 8E-06 49.4 8.7 17 162-178 45-61 (386)
149 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.13 4.6E-06 50.1 6.6 49 124-178 8-61 (322)
150 4b4t_K 26S protease regulatory 93.1 0.13 4.5E-06 52.0 6.6 53 123-178 167-222 (428)
151 4b4t_I 26S protease regulatory 93.0 0.14 4.8E-06 51.4 6.5 53 123-178 177-232 (437)
152 1sxj_D Activator 1 41 kDa subu 92.8 0.14 4.8E-06 50.5 6.4 39 270-309 132-170 (353)
153 3vfd_A Spastin; ATPase, microt 92.7 0.24 8.3E-06 49.7 8.0 18 162-179 148-165 (389)
154 2r6a_A DNAB helicase, replicat 92.5 0.42 1.5E-05 49.0 9.7 39 161-204 202-240 (454)
155 2qz4_A Paraplegin; AAA+, SPG7, 92.4 0.79 2.7E-05 42.8 10.7 17 162-178 39-55 (262)
156 3pfi_A Holliday junction ATP-d 92.1 0.33 1.1E-05 47.6 7.9 16 163-178 56-71 (338)
157 1jr3_A DNA polymerase III subu 92.0 0.46 1.6E-05 47.1 9.1 15 164-178 40-54 (373)
158 2w0m_A SSO2452; RECA, SSPF, un 92.0 0.32 1.1E-05 44.5 7.3 18 161-178 22-39 (235)
159 2dr3_A UPF0273 protein PH0284; 92.0 0.31 1.1E-05 45.1 7.3 50 161-217 22-71 (247)
160 1iqp_A RFCS; clamp loader, ext 92.0 0.4 1.4E-05 46.5 8.4 41 270-312 109-149 (327)
161 3oiy_A Reverse gyrase helicase 91.8 0.55 1.9E-05 47.4 9.5 79 368-446 62-147 (414)
162 2q6t_A DNAB replication FORK h 91.8 0.66 2.2E-05 47.4 10.0 114 162-286 200-325 (444)
163 2p6n_A ATP-dependent RNA helic 91.3 1.9 6.5E-05 38.1 11.4 69 198-277 56-128 (191)
164 2zan_A Vacuolar protein sortin 91.3 0.28 9.6E-06 50.2 6.6 49 124-178 130-183 (444)
165 2hjv_A ATP-dependent RNA helic 90.9 0.97 3.3E-05 38.8 8.8 71 198-279 37-111 (163)
166 3hu3_A Transitional endoplasmi 90.8 0.93 3.2E-05 46.8 9.9 43 272-314 298-350 (489)
167 1sxj_C Activator 1 40 kDa subu 90.8 0.36 1.2E-05 47.4 6.6 38 270-308 109-146 (340)
168 3pvs_A Replication-associated 90.5 0.27 9.3E-06 50.3 5.5 16 163-178 51-66 (447)
169 2rb4_A ATP-dependent RNA helic 90.3 1.2 4E-05 38.8 8.9 71 196-277 34-108 (175)
170 1n0w_A DNA repair protein RAD5 90.3 0.67 2.3E-05 42.7 7.7 19 161-179 23-41 (243)
171 2eyq_A TRCF, transcription-rep 90.2 1.5 5.3E-05 50.4 12.0 76 369-444 651-731 (1151)
172 2gno_A DNA polymerase III, gam 90.1 0.65 2.2E-05 44.7 7.6 42 269-312 80-121 (305)
173 1sxj_B Activator 1 37 kDa subu 90.0 0.45 1.5E-05 46.0 6.5 38 271-309 107-144 (323)
174 2ehv_A Hypothetical protein PH 89.9 0.24 8.3E-06 46.0 4.4 44 270-313 134-182 (251)
175 2ce7_A Cell division protein F 89.9 0.55 1.9E-05 48.2 7.2 16 163-178 50-65 (476)
176 2chq_A Replication factor C sm 89.8 0.33 1.1E-05 46.9 5.4 15 164-178 40-54 (319)
177 3hjh_A Transcription-repair-co 89.8 1.2 4E-05 45.9 9.5 51 161-220 13-63 (483)
178 1fuk_A Eukaryotic initiation f 89.6 1.2 4.2E-05 38.2 8.4 72 197-279 31-106 (165)
179 3eaq_A Heat resistant RNA depe 89.3 1.2 4.2E-05 40.2 8.4 69 198-277 33-105 (212)
180 3co5_A Putative two-component 89.0 0.28 9.5E-06 41.3 3.5 21 158-178 23-43 (143)
181 2zts_A Putative uncharacterize 88.8 0.22 7.4E-06 46.3 3.0 50 162-217 30-79 (251)
182 3n70_A Transport activator; si 88.6 0.32 1.1E-05 41.0 3.7 20 159-178 21-40 (145)
183 2fna_A Conserved hypothetical 88.6 14 0.00047 35.7 16.4 53 254-312 124-179 (357)
184 1t6n_A Probable ATP-dependent 88.5 2.6 8.9E-05 38.0 10.1 73 370-445 82-165 (220)
185 3e70_C DPA, signal recognition 88.2 4.4 0.00015 39.3 12.0 53 271-323 211-264 (328)
186 1w5s_A Origin recognition comp 88.0 0.59 2E-05 47.0 6.0 16 163-178 51-68 (412)
187 3ber_A Probable ATP-dependent 87.9 3.2 0.00011 38.4 10.5 73 368-444 109-192 (249)
188 3cf2_A TER ATPase, transitiona 87.6 1.1 3.9E-05 48.9 8.1 53 123-178 472-527 (806)
189 1ls1_A Signal recognition part 87.3 2.9 9.8E-05 39.9 10.0 47 270-316 179-226 (295)
190 2px0_A Flagellar biosynthesis 86.9 3.9 0.00013 39.0 10.7 42 270-313 181-225 (296)
191 1t5i_A C_terminal domain of A 86.8 3.2 0.00011 35.9 9.2 88 197-299 32-123 (172)
192 3m6a_A ATP-dependent protease 86.6 0.72 2.5E-05 48.5 5.7 26 161-188 107-132 (543)
193 2oap_1 GSPE-2, type II secreti 86.4 0.83 2.8E-05 47.5 6.0 46 139-188 238-284 (511)
194 1nlf_A Regulatory protein REPA 86.3 1.6 5.3E-05 41.4 7.5 21 159-179 27-47 (279)
195 4ddu_A Reverse gyrase; topoiso 86.1 1.8 6.1E-05 49.6 9.0 79 368-446 119-204 (1104)
196 3cmu_A Protein RECA, recombina 85.9 0.78 2.7E-05 55.1 6.0 46 156-207 1415-1466(2050)
197 1vma_A Cell division protein F 85.8 7.7 0.00026 37.1 12.1 16 163-178 105-120 (306)
198 2jgn_A DBX, DDX3, ATP-dependen 85.7 1.4 4.7E-05 38.8 6.3 89 171-277 28-120 (185)
199 1oyw_A RECQ helicase, ATP-depe 85.4 2.2 7.5E-05 44.5 8.7 75 370-444 65-145 (523)
200 1p9r_A General secretion pathw 84.9 0.98 3.4E-05 45.6 5.5 35 152-188 155-191 (418)
201 3cf2_A TER ATPase, transitiona 84.8 1.6 5.6E-05 47.7 7.5 43 271-313 297-349 (806)
202 1qvr_A CLPB protein; coiled co 84.8 1.6 5.5E-05 48.7 7.7 17 162-178 191-207 (854)
203 2v1x_A ATP-dependent DNA helic 84.7 2 6.8E-05 45.6 8.0 59 370-428 84-144 (591)
204 2i4i_A ATP-dependent RNA helic 84.5 4.9 0.00017 40.1 10.7 71 196-277 276-350 (417)
205 2oxc_A Probable ATP-dependent 84.2 3.2 0.00011 37.7 8.4 72 368-444 90-172 (230)
206 4a1f_A DNAB helicase, replicat 84.1 0.78 2.7E-05 44.8 4.2 39 161-205 45-83 (338)
207 3i5x_A ATP-dependent RNA helic 84.1 7.4 0.00025 40.8 12.3 93 196-300 339-435 (563)
208 3b85_A Phosphate starvation-in 84.0 1 3.4E-05 40.6 4.6 41 145-187 5-45 (208)
209 1vec_A ATP-dependent RNA helic 83.8 5.4 0.00018 35.3 9.6 72 369-444 70-152 (206)
210 2qgz_A Helicase loader, putati 83.7 1.4 4.7E-05 42.5 5.8 26 162-188 152-177 (308)
211 3fe2_A Probable ATP-dependent 83.6 4.6 0.00016 37.0 9.3 71 370-444 102-182 (242)
212 3bh0_A DNAB-like replicative h 83.5 1.1 3.6E-05 43.5 4.9 39 161-205 67-105 (315)
213 3pxi_A Negative regulator of g 83.3 0.92 3.1E-05 49.9 4.9 15 164-178 523-537 (758)
214 1ypw_A Transitional endoplasmi 82.7 5.5 0.00019 43.9 10.8 17 162-178 238-254 (806)
215 3i32_A Heat resistant RNA depe 82.4 2.5 8.5E-05 40.5 7.0 69 198-277 30-102 (300)
216 2yhs_A FTSY, cell division pro 82.1 5 0.00017 41.1 9.3 33 164-202 295-327 (503)
217 2ffh_A Protein (FFH); SRP54, s 82.1 6.3 0.00022 39.6 10.0 51 270-320 179-230 (425)
218 1e9r_A Conjugal transfer prote 82.1 1 3.4E-05 45.9 4.3 44 161-210 52-95 (437)
219 2l8b_A Protein TRAI, DNA helic 82.0 1.7 5.7E-05 37.9 4.9 59 149-212 36-96 (189)
220 3bor_A Human initiation factor 81.7 4.1 0.00014 37.2 8.1 73 369-444 97-179 (237)
221 2gza_A Type IV secretion syste 81.6 1 3.6E-05 44.5 4.1 28 159-188 172-199 (361)
222 3pey_A ATP-dependent RNA helic 81.6 17 0.00057 35.7 13.2 94 196-300 243-342 (395)
223 1w36_B RECB, exodeoxyribonucle 81.5 1.8 6E-05 50.3 6.5 56 164-219 18-79 (1180)
224 3sqw_A ATP-dependent RNA helic 81.5 11 0.00037 39.7 12.3 93 196-300 288-384 (579)
225 2pt7_A CAG-ALFA; ATPase, prote 81.1 1.1 3.7E-05 43.7 3.9 28 160-189 169-196 (330)
226 2xxa_A Signal recognition part 81.1 5.6 0.00019 40.2 9.3 25 164-189 102-126 (433)
227 3fht_A ATP-dependent RNA helic 80.5 4.5 0.00016 40.2 8.6 70 197-277 267-340 (412)
228 2eyu_A Twitching motility prot 79.8 0.75 2.6E-05 43.2 2.2 28 159-188 22-49 (261)
229 3iuy_A Probable ATP-dependent 79.7 4.5 0.00015 36.6 7.6 72 369-444 93-173 (228)
230 2pl3_A Probable ATP-dependent 79.4 4.6 0.00016 36.8 7.5 71 369-444 96-177 (236)
231 1xti_A Probable ATP-dependent 79.3 8.9 0.0003 37.7 10.3 72 370-444 76-158 (391)
232 1tue_A Replication protein E1; 79.1 2.3 7.9E-05 38.0 5.0 49 135-186 29-81 (212)
233 2xau_A PRE-mRNA-splicing facto 79.1 5.9 0.0002 43.5 9.4 75 196-277 303-393 (773)
234 2gxq_A Heat resistant RNA depe 78.7 7.4 0.00025 34.3 8.6 72 369-444 71-150 (207)
235 1hv8_A Putative ATP-dependent 78.6 6.4 0.00022 38.3 8.9 72 196-278 238-313 (367)
236 1yks_A Genome polyprotein [con 78.5 2.3 8E-05 43.2 5.6 68 197-276 178-245 (440)
237 2r44_A Uncharacterized protein 78.5 1.2 3.9E-05 43.5 3.2 24 155-178 39-62 (331)
238 1lvg_A Guanylate kinase, GMP k 78.0 1.2 4.2E-05 39.6 3.0 26 161-188 3-28 (198)
239 2d7d_A Uvrabc system protein B 77.9 10 0.00035 40.7 10.6 77 197-284 446-526 (661)
240 1kgd_A CASK, peripheral plasma 77.7 0.89 3E-05 39.8 1.9 19 160-178 3-21 (180)
241 1u0j_A DNA replication protein 76.8 3.1 0.00011 38.8 5.4 42 135-179 74-121 (267)
242 2bjv_A PSP operon transcriptio 76.7 1.7 5.7E-05 40.7 3.7 19 160-178 27-45 (265)
243 1s2m_A Putative ATP-dependent 76.5 6.6 0.00023 38.9 8.3 70 197-277 259-332 (400)
244 1qde_A EIF4A, translation init 76.4 5 0.00017 36.1 6.7 72 368-444 80-161 (224)
245 3nbx_X ATPase RAVA; AAA+ ATPas 76.1 1.3 4.4E-05 45.8 2.8 28 151-178 30-57 (500)
246 3cmw_A Protein RECA, recombina 76.0 3.4 0.00012 49.1 6.6 120 162-315 1431-1570(1706)
247 2ewv_A Twitching motility prot 76.0 1.1 3.8E-05 44.5 2.3 27 160-188 134-160 (372)
248 1ofh_A ATP-dependent HSL prote 75.1 4.3 0.00015 38.6 6.2 17 162-178 50-66 (310)
249 3vaa_A Shikimate kinase, SK; s 75.0 1.2 4E-05 39.7 2.0 18 161-178 24-41 (199)
250 3hws_A ATP-dependent CLP prote 74.4 3.6 0.00012 40.5 5.6 18 161-178 50-67 (363)
251 2j0s_A ATP-dependent RNA helic 74.4 8.2 0.00028 38.4 8.4 70 197-277 277-350 (410)
252 2z43_A DNA repair and recombin 74.3 1.9 6.5E-05 41.8 3.4 63 155-218 95-164 (324)
253 2db3_A ATP-dependent RNA helic 74.1 9.4 0.00032 38.5 8.8 68 199-277 303-374 (434)
254 2v9p_A Replication protein E1; 74.1 1.4 4.7E-05 42.3 2.3 26 161-188 125-150 (305)
255 3trf_A Shikimate kinase, SK; a 74.1 1.3 4.3E-05 38.8 1.9 18 162-179 5-22 (185)
256 2v6i_A RNA helicase; membrane, 74.1 3.8 0.00013 41.5 5.8 53 197-253 172-224 (431)
257 3iij_A Coilin-interacting nucl 73.9 1.1 3.6E-05 39.2 1.4 19 160-178 9-27 (180)
258 2qor_A Guanylate kinase; phosp 73.7 1.3 4.4E-05 39.6 1.9 20 159-178 9-28 (204)
259 2j37_W Signal recognition part 73.6 31 0.0011 35.4 12.5 25 164-189 103-127 (504)
260 3jvv_A Twitching mobility prot 73.5 1.5 5.1E-05 43.2 2.5 18 161-178 122-139 (356)
261 2yjt_D ATP-dependent RNA helic 75.7 0.69 2.4E-05 40.1 0.0 70 197-277 31-104 (170)
262 1qhx_A CPT, protein (chloramph 73.4 1.3 4.6E-05 38.3 1.9 17 162-178 3-19 (178)
263 3ly5_A ATP-dependent RNA helic 72.8 14 0.00048 34.2 9.1 72 369-444 125-207 (262)
264 4f4c_A Multidrug resistance pr 72.7 4.9 0.00017 47.0 6.9 38 270-307 1234-1271(1321)
265 3tau_A Guanylate kinase, GMP k 72.7 1.4 4.9E-05 39.5 2.0 18 161-178 7-24 (208)
266 2x8a_A Nuclear valosin-contain 72.6 0.64 2.2E-05 44.0 -0.4 52 124-178 6-60 (274)
267 1z6g_A Guanylate kinase; struc 72.4 2.1 7.1E-05 38.8 3.0 27 160-188 21-47 (218)
268 3lw7_A Adenylate kinase relate 72.3 1.4 4.9E-05 37.8 1.8 15 164-178 3-17 (179)
269 4ag6_A VIRB4 ATPase, type IV s 72.2 3.2 0.00011 41.4 4.6 42 161-208 34-75 (392)
270 1rj9_A FTSY, signal recognitio 72.1 2.8 9.6E-05 40.2 4.0 27 162-190 102-128 (304)
271 2qmh_A HPR kinase/phosphorylas 72.0 1.4 4.9E-05 39.1 1.7 17 162-178 34-50 (205)
272 1c4o_A DNA nucleotide excision 71.8 20 0.00068 38.5 11.0 91 197-298 440-535 (664)
273 3a00_A Guanylate kinase, GMP k 71.5 2.1 7.3E-05 37.5 2.8 24 163-188 2-25 (186)
274 1zp6_A Hypothetical protein AT 71.4 1.1 3.8E-05 39.4 0.9 19 160-178 7-25 (191)
275 1j8m_F SRP54, signal recogniti 71.4 19 0.00064 34.2 9.6 15 164-178 100-114 (297)
276 1wrb_A DJVLGB; RNA helicase, D 71.3 13 0.00045 34.0 8.4 71 370-444 100-180 (253)
277 2j41_A Guanylate kinase; GMP, 71.3 1.6 5.4E-05 38.9 1.9 25 160-186 4-28 (207)
278 2wv9_A Flavivirin protease NS2 71.2 4.8 0.00016 43.3 5.9 69 196-276 410-478 (673)
279 1kag_A SKI, shikimate kinase I 71.1 1.8 6.3E-05 37.2 2.3 23 162-186 4-26 (173)
280 2ze6_A Isopentenyl transferase 71.1 1.6 5.3E-05 40.7 1.9 14 165-178 4-17 (253)
281 3a8t_A Adenylate isopentenyltr 71.1 1.7 5.9E-05 42.1 2.2 16 163-178 41-56 (339)
282 1v5w_A DMC1, meiotic recombina 70.7 2.2 7.5E-05 41.8 2.9 50 156-206 111-166 (343)
283 3bgw_A DNAB-like replicative h 70.6 2.8 9.7E-05 42.6 3.8 38 162-205 197-234 (444)
284 3tr0_A Guanylate kinase, GMP k 70.5 2.2 7.5E-05 37.9 2.7 25 161-187 6-30 (205)
285 3b9p_A CG5977-PA, isoform A; A 70.4 1.6 5.4E-05 41.6 1.8 17 162-178 54-70 (297)
286 3foz_A TRNA delta(2)-isopenten 70.3 1.7 5.8E-05 41.6 1.9 15 164-178 12-26 (316)
287 3ney_A 55 kDa erythrocyte memb 70.3 1.8 6E-05 38.6 1.9 19 160-178 17-35 (197)
288 1bg2_A Kinesin; motor protein, 70.2 2.9 9.9E-05 40.4 3.6 25 155-179 69-95 (325)
289 1ojl_A Transcriptional regulat 70.2 2.6 9E-05 40.4 3.3 18 161-178 24-41 (304)
290 3exa_A TRNA delta(2)-isopenten 70.1 1.7 5.9E-05 41.6 1.9 15 164-178 5-19 (322)
291 1znw_A Guanylate kinase, GMP k 69.8 2.3 7.7E-05 38.1 2.6 29 158-188 16-44 (207)
292 1wp9_A ATP-dependent RNA helic 69.6 15 0.00053 37.0 9.4 94 171-279 340-445 (494)
293 1y63_A LMAJ004144AAA protein; 69.6 1.9 6.5E-05 37.8 2.0 18 161-178 9-26 (184)
294 3nwn_A Kinesin-like protein KI 69.5 2.9 0.0001 41.0 3.5 25 155-179 96-122 (359)
295 1ex7_A Guanylate kinase; subst 69.3 2.2 7.5E-05 37.6 2.3 16 163-178 2-17 (186)
296 3dc4_A Kinesin-like protein NO 69.0 2.9 9.8E-05 40.8 3.3 25 155-179 86-112 (344)
297 3vkg_A Dynein heavy chain, cyt 68.9 6.4 0.00022 49.7 6.9 71 132-206 873-947 (3245)
298 2jlq_A Serine protease subunit 68.8 6 0.00021 40.3 5.9 67 198-276 190-256 (451)
299 1lv7_A FTSH; alpha/beta domain 68.8 1.8 6.1E-05 40.3 1.7 17 162-178 45-61 (257)
300 1kht_A Adenylate kinase; phosp 68.4 2 6.8E-05 37.6 1.9 17 162-178 3-19 (192)
301 2ius_A DNA translocase FTSK; n 68.3 6 0.0002 40.8 5.6 27 161-188 166-192 (512)
302 1s96_A Guanylate kinase, GMP k 68.3 2.5 8.6E-05 38.3 2.6 27 159-187 13-39 (219)
303 2vvg_A Kinesin-2; motor protei 68.1 3.4 0.00012 40.4 3.6 25 155-179 81-107 (350)
304 1t5c_A CENP-E protein, centrom 68.1 3.3 0.00011 40.4 3.5 25 155-179 69-95 (349)
305 1goj_A Kinesin, kinesin heavy 68.0 3.4 0.00012 40.5 3.5 25 155-179 72-98 (355)
306 2zfi_A Kinesin-like protein KI 67.9 3.4 0.00012 40.6 3.6 25 155-179 81-107 (366)
307 3fmo_B ATP-dependent RNA helic 67.8 7.9 0.00027 36.9 6.1 68 370-444 162-241 (300)
308 3uk6_A RUVB-like 2; hexameric 67.7 1.9 6.6E-05 42.5 1.8 17 162-178 70-86 (368)
309 3gbj_A KIF13B protein; kinesin 67.7 3.4 0.00012 40.5 3.5 25 155-179 84-110 (354)
310 4gp7_A Metallophosphoesterase; 67.7 1.8 6.2E-05 37.4 1.4 19 161-179 8-26 (171)
311 1ly1_A Polynucleotide kinase; 67.6 2.1 7.2E-05 37.0 1.9 15 164-178 4-18 (181)
312 3b6u_A Kinesin-like protein KI 67.6 3.4 0.00012 40.7 3.5 25 155-179 93-119 (372)
313 4a14_A Kinesin, kinesin-like p 67.6 3.5 0.00012 40.2 3.6 25 155-179 75-101 (344)
314 3b9q_A Chloroplast SRP recepto 67.3 2.8 9.6E-05 40.2 2.8 26 162-189 100-125 (302)
315 3kb2_A SPBC2 prophage-derived 66.9 2.2 7.5E-05 36.6 1.8 15 164-178 3-17 (173)
316 3t15_A Ribulose bisphosphate c 66.8 2 6.7E-05 41.0 1.6 16 163-178 37-52 (293)
317 1v8k_A Kinesin-like protein KI 66.4 3.4 0.00011 41.3 3.2 25 155-179 146-172 (410)
318 3tif_A Uncharacterized ABC tra 66.4 2 6.9E-05 39.4 1.5 26 161-188 30-55 (235)
319 4a74_A DNA repair and recombin 66.4 2.5 8.7E-05 38.2 2.2 18 161-178 24-41 (231)
320 3c8u_A Fructokinase; YP_612366 66.3 2.6 8.8E-05 37.7 2.2 26 162-189 22-47 (208)
321 1x88_A Kinesin-like protein KI 66.2 3.4 0.00011 40.6 3.1 25 155-179 80-106 (359)
322 4eun_A Thermoresistant glucoki 66.2 2.4 8.2E-05 37.7 2.0 24 161-186 28-51 (200)
323 2i1q_A DNA repair and recombin 66.2 4.3 0.00015 39.2 4.0 56 162-218 98-165 (322)
324 2wbe_C Bipolar kinesin KRP-130 66.0 3.6 0.00012 40.6 3.3 25 155-179 92-118 (373)
325 2oca_A DAR protein, ATP-depend 65.9 42 0.0014 34.3 11.8 74 198-281 349-426 (510)
326 3lda_A DNA repair protein RAD5 65.9 2.9 9.9E-05 41.8 2.7 44 162-205 178-221 (400)
327 2h58_A Kinesin-like protein KI 65.9 4.1 0.00014 39.5 3.6 26 154-179 71-98 (330)
328 1fuu_A Yeast initiation factor 65.8 23 0.00078 34.7 9.4 71 369-444 88-168 (394)
329 1tf5_A Preprotein translocase 65.8 17 0.00057 39.7 8.7 72 367-444 121-209 (844)
330 3cm0_A Adenylate kinase; ATP-b 65.7 1.8 6E-05 37.9 1.0 17 162-178 4-20 (186)
331 2nr8_A Kinesin-like protein KI 65.6 4 0.00014 40.0 3.5 25 155-179 95-121 (358)
332 2y65_A Kinesin, kinesin heavy 65.6 4 0.00014 40.1 3.6 25 155-179 76-102 (365)
333 3nwj_A ATSK2; P loop, shikimat 65.6 3.3 0.00011 38.4 2.8 19 160-178 46-64 (250)
334 4etp_A Kinesin-like protein KA 65.3 3.7 0.00013 41.0 3.3 25 155-179 132-158 (403)
335 3o8b_A HCV NS3 protease/helica 65.2 9.4 0.00032 40.8 6.6 66 196-276 396-461 (666)
336 1ye8_A Protein THEP1, hypothet 65.1 3.4 0.00012 36.0 2.7 23 164-188 2-24 (178)
337 1f2t_A RAD50 ABC-ATPase; DNA d 65.0 3.7 0.00013 34.5 2.9 22 165-188 26-47 (149)
338 3lre_A Kinesin-like protein KI 65.0 4.1 0.00014 39.9 3.5 25 155-179 97-123 (355)
339 1knq_A Gluconate kinase; ALFA/ 65.0 2.2 7.5E-05 36.8 1.4 17 162-178 8-24 (175)
340 3crm_A TRNA delta(2)-isopenten 64.8 2.7 9.3E-05 40.5 2.1 15 164-178 7-21 (323)
341 3bfn_A Kinesin-like protein KI 64.8 3.4 0.00012 40.9 2.8 24 156-179 91-116 (388)
342 3u4q_B ATP-dependent helicase/ 64.8 3.5 0.00012 47.7 3.5 32 371-402 343-375 (1166)
343 3kta_A Chromosome segregation 64.8 3.9 0.00013 35.4 3.1 23 164-188 28-50 (182)
344 2heh_A KIF2C protein; kinesin, 64.5 3.8 0.00013 40.5 3.2 25 155-179 126-152 (387)
345 2owm_A Nckin3-434, related to 64.4 4.3 0.00015 41.0 3.6 25 155-179 128-154 (443)
346 1um8_A ATP-dependent CLP prote 64.3 2.8 9.7E-05 41.5 2.3 17 162-178 72-88 (376)
347 2r62_A Cell division protease 64.2 1.8 6E-05 40.6 0.7 17 162-178 44-60 (268)
348 3d3q_A TRNA delta(2)-isopenten 64.1 2.6 9E-05 40.9 1.9 15 164-178 9-23 (340)
349 4akg_A Glutathione S-transfera 64.1 6.3 0.00021 49.2 5.5 47 132-179 890-940 (2695)
350 3u06_A Protein claret segregat 63.9 4 0.00014 40.8 3.3 26 154-179 129-156 (412)
351 2i3b_A HCR-ntpase, human cance 63.8 4.2 0.00014 35.8 3.1 41 269-312 103-145 (189)
352 1m7g_A Adenylylsulfate kinase; 63.7 3.8 0.00013 36.7 2.9 30 148-178 12-41 (211)
353 3nh6_A ATP-binding cassette SU 63.7 2.3 7.9E-05 40.8 1.4 26 161-188 79-104 (306)
354 2rep_A Kinesin-like protein KI 63.5 4.4 0.00015 40.0 3.4 25 155-179 107-133 (376)
355 1tf7_A KAIC; homohexamer, hexa 63.4 13 0.00043 38.7 7.1 125 159-310 278-414 (525)
356 3cob_A Kinesin heavy chain-lik 63.2 3.7 0.00013 40.4 2.8 25 155-179 71-97 (369)
357 3t0q_A AGR253WP; kinesin, alph 63.1 4 0.00014 39.9 3.0 25 155-179 77-103 (349)
358 1ixz_A ATP-dependent metallopr 63.1 2.7 9.1E-05 39.0 1.7 59 124-187 12-72 (254)
359 2iut_A DNA translocase FTSK; n 62.8 8.6 0.00029 40.1 5.6 43 162-206 214-256 (574)
360 3t61_A Gluconokinase; PSI-biol 62.6 3 0.0001 37.0 1.9 16 163-178 19-34 (202)
361 2og2_A Putative signal recogni 62.5 3.8 0.00013 40.3 2.7 26 162-189 157-182 (359)
362 1xjc_A MOBB protein homolog; s 62.4 7.4 0.00025 33.5 4.3 24 165-189 7-30 (169)
363 2r8r_A Sensor protein; KDPD, P 62.3 6.6 0.00022 35.6 4.0 26 164-190 8-33 (228)
364 2c95_A Adenylate kinase 1; tra 62.2 3.2 0.00011 36.4 2.1 18 161-178 8-25 (196)
365 1cr0_A DNA primase/helicase; R 62.2 5.8 0.0002 37.6 4.0 18 161-178 34-51 (296)
366 2c9o_A RUVB-like 1; hexameric 62.2 3.1 0.00011 42.5 2.2 18 162-179 63-80 (456)
367 1f9v_A Kinesin-like protein KA 62.0 4.3 0.00015 39.6 3.0 25 155-179 76-102 (347)
368 3eph_A TRNA isopentenyltransfe 62.0 3.8 0.00013 40.8 2.6 21 165-186 5-25 (409)
369 4fcw_A Chaperone protein CLPB; 61.9 3.4 0.00012 39.5 2.3 15 164-178 49-63 (311)
370 4g1u_C Hemin import ATP-bindin 61.9 3.5 0.00012 38.7 2.2 26 161-188 36-61 (266)
371 3d8b_A Fidgetin-like protein 1 61.8 3 0.0001 41.0 1.9 17 162-178 117-133 (357)
372 2bdt_A BH3686; alpha-beta prot 61.8 3.2 0.00011 36.3 1.9 15 164-178 4-18 (189)
373 2zr9_A Protein RECA, recombina 61.7 6.3 0.00021 38.6 4.2 38 162-205 61-98 (349)
374 1nkt_A Preprotein translocase 61.7 20 0.00068 39.4 8.3 72 367-444 149-237 (922)
375 1hqc_A RUVB; extended AAA-ATPa 61.7 2.9 0.0001 40.2 1.8 17 162-178 38-54 (324)
376 2rhm_A Putative kinase; P-loop 61.7 3.1 0.00011 36.4 1.8 17 162-178 5-21 (193)
377 1u94_A RECA protein, recombina 61.6 6.5 0.00022 38.5 4.3 38 161-204 62-99 (356)
378 2fsf_A Preprotein translocase 61.6 23 0.0008 38.6 8.8 71 368-444 113-200 (853)
379 2whx_A Serine protease/ntpase/ 61.4 13 0.00043 39.6 6.8 68 197-276 356-423 (618)
380 3uie_A Adenylyl-sulfate kinase 61.2 3.8 0.00013 36.3 2.3 26 161-188 24-49 (200)
381 1via_A Shikimate kinase; struc 61.1 3.6 0.00012 35.5 2.1 16 164-179 6-21 (175)
382 1htw_A HI0065; nucleotide-bind 61.0 3.3 0.00011 35.3 1.8 26 161-188 32-57 (158)
383 2v54_A DTMP kinase, thymidylat 60.9 2.9 0.0001 37.0 1.5 18 161-178 3-20 (204)
384 4gl2_A Interferon-induced heli 60.9 8.4 0.00029 41.6 5.5 105 197-312 401-519 (699)
385 1ry6_A Internal kinesin; kines 60.8 4.6 0.00016 39.6 3.0 19 161-179 82-102 (360)
386 1gvn_B Zeta; postsegregational 60.7 3.2 0.00011 39.4 1.8 16 163-178 34-49 (287)
387 1g8p_A Magnesium-chelatase 38 60.6 4.3 0.00015 39.5 2.8 17 162-178 45-61 (350)
388 1sgw_A Putative ABC transporte 60.5 3.4 0.00011 37.3 1.8 42 269-310 149-190 (214)
389 3hr8_A Protein RECA; alpha and 60.3 6 0.0002 38.8 3.7 40 162-207 61-100 (356)
390 3lnc_A Guanylate kinase, GMP k 60.2 3 0.0001 38.0 1.4 23 161-185 26-48 (231)
391 3gfo_A Cobalt import ATP-bindi 60.2 2.9 0.0001 39.4 1.4 26 161-188 33-58 (275)
392 2ff7_A Alpha-hemolysin translo 60.1 3 0.0001 38.6 1.5 26 161-188 34-59 (247)
393 2iyv_A Shikimate kinase, SK; t 60.0 4.2 0.00014 35.3 2.3 17 163-179 3-19 (184)
394 2z0m_A 337AA long hypothetical 59.9 18 0.00063 34.4 7.3 68 196-278 220-291 (337)
395 1zuh_A Shikimate kinase; alpha 59.8 3.5 0.00012 35.2 1.8 17 163-179 8-24 (168)
396 3asz_A Uridine kinase; cytidin 59.7 4.2 0.00014 36.3 2.4 24 162-187 6-29 (211)
397 1tev_A UMP-CMP kinase; ploop, 59.7 3.6 0.00012 36.0 1.9 17 163-179 4-20 (196)
398 3tqc_A Pantothenate kinase; bi 59.4 13 0.00044 35.8 5.8 23 165-189 95-117 (321)
399 2r2a_A Uncharacterized protein 59.4 4.5 0.00016 35.9 2.5 40 272-311 88-132 (199)
400 1q0u_A Bstdead; DEAD protein, 59.2 9.5 0.00032 34.1 4.7 72 369-444 71-156 (219)
401 1iy2_A ATP-dependent metallopr 59.2 4.4 0.00015 38.1 2.5 59 124-187 36-96 (278)
402 1nij_A Hypothetical protein YJ 59.2 5.8 0.0002 38.2 3.4 14 165-178 7-20 (318)
403 1nks_A Adenylate kinase; therm 59.1 3.6 0.00012 35.9 1.7 15 164-178 3-17 (194)
404 1mv5_A LMRA, multidrug resista 59.1 3 0.0001 38.5 1.3 26 161-188 27-52 (243)
405 2l82_A Designed protein OR32; 58.9 44 0.0015 25.6 7.4 111 373-489 5-125 (162)
406 1aky_A Adenylate kinase; ATP:A 58.7 3.9 0.00013 36.9 1.9 17 162-178 4-20 (220)
407 2ipc_A Preprotein translocase 58.6 39 0.0013 37.2 9.8 58 366-429 116-177 (997)
408 2cvh_A DNA repair and recombin 58.6 3.7 0.00013 36.8 1.8 18 162-179 20-37 (220)
409 1in4_A RUVB, holliday junction 58.6 4.4 0.00015 39.3 2.5 16 163-178 52-67 (334)
410 2pcj_A ABC transporter, lipopr 58.5 3.2 0.00011 37.8 1.3 26 161-188 29-54 (224)
411 1zak_A Adenylate kinase; ATP:A 58.5 4.4 0.00015 36.6 2.3 17 162-178 5-21 (222)
412 2cdn_A Adenylate kinase; phosp 58.5 3.1 0.00011 36.9 1.2 16 163-178 21-36 (201)
413 2pze_A Cystic fibrosis transme 58.4 3.4 0.00011 37.7 1.4 26 161-188 33-58 (229)
414 1zd8_A GTP:AMP phosphotransfer 58.3 3.8 0.00013 37.1 1.8 17 162-178 7-23 (227)
415 2bwj_A Adenylate kinase 5; pho 58.2 4.2 0.00014 35.7 2.1 18 161-178 11-28 (199)
416 3fb4_A Adenylate kinase; psych 58.1 4 0.00014 36.6 1.9 15 165-179 3-17 (216)
417 1e6c_A Shikimate kinase; phosp 57.9 4.5 0.00015 34.6 2.1 16 163-178 3-18 (173)
418 1b0u_A Histidine permease; ABC 57.8 3.5 0.00012 38.5 1.5 26 161-188 31-56 (262)
419 2f1r_A Molybdopterin-guanine d 57.8 4 0.00014 35.3 1.8 24 164-189 4-27 (171)
420 3foj_A Uncharacterized protein 57.7 8.4 0.00029 29.5 3.5 36 369-404 55-90 (100)
421 3auy_A DNA double-strand break 57.4 5.3 0.00018 39.5 2.8 21 164-186 27-47 (371)
422 3gk5_A Uncharacterized rhodane 57.3 8.3 0.00028 30.1 3.5 37 369-405 54-90 (108)
423 2ixe_A Antigen peptide transpo 57.3 3.6 0.00012 38.6 1.5 42 269-310 172-214 (271)
424 3dkp_A Probable ATP-dependent 57.3 5.6 0.00019 36.4 2.9 74 369-445 97-182 (245)
425 1g6h_A High-affinity branched- 57.2 4.4 0.00015 37.7 2.1 26 161-188 32-57 (257)
426 2plr_A DTMP kinase, probable t 57.1 3.6 0.00012 36.6 1.4 17 162-178 4-20 (213)
427 2pez_A Bifunctional 3'-phospho 57.1 3.7 0.00013 35.5 1.5 24 162-187 5-28 (179)
428 1pzn_A RAD51, DNA repair and r 57.0 5.2 0.00018 39.1 2.7 17 162-178 131-147 (349)
429 1xp8_A RECA protein, recombina 57.0 8.4 0.00029 37.9 4.2 39 162-206 74-112 (366)
430 2va8_A SSO2462, SKI2-type heli 57.0 28 0.00097 37.6 8.9 74 197-277 253-362 (715)
431 1qf9_A UMP/CMP kinase, protein 56.9 4.2 0.00014 35.5 1.8 15 164-178 8-22 (194)
432 2olj_A Amino acid ABC transpor 56.9 3.7 0.00013 38.4 1.5 26 161-188 49-74 (263)
433 3f9v_A Minichromosome maintena 56.7 4.7 0.00016 42.7 2.4 15 164-178 329-343 (595)
434 1ji0_A ABC transporter; ATP bi 56.7 4.6 0.00016 37.1 2.1 26 161-188 31-56 (240)
435 3eiq_A Eukaryotic initiation f 56.6 44 0.0015 32.8 9.7 73 369-444 107-189 (414)
436 3dl0_A Adenylate kinase; phosp 56.5 4.4 0.00015 36.3 1.9 16 164-179 2-17 (216)
437 4f4c_A Multidrug resistance pr 56.5 5.1 0.00018 46.9 2.9 39 269-307 570-608 (1321)
438 3qf7_A RAD50; ABC-ATPase, ATPa 56.2 5.8 0.0002 39.1 2.9 16 164-179 25-40 (365)
439 1vpl_A ABC transporter, ATP-bi 56.1 3.9 0.00013 38.0 1.5 26 161-188 40-65 (256)
440 2yvu_A Probable adenylyl-sulfa 56.0 4 0.00014 35.6 1.5 17 162-178 13-29 (186)
441 2cbz_A Multidrug resistance-as 55.9 4.3 0.00015 37.3 1.7 26 161-188 30-55 (237)
442 4a2q_A RIG-I, retinoic acid in 55.9 22 0.00076 39.0 7.8 71 370-444 296-377 (797)
443 3tbk_A RIG-I helicase domain; 55.8 14 0.00049 38.2 6.1 71 370-444 52-133 (555)
444 3io5_A Recombination and repai 55.7 11 0.00036 36.3 4.4 41 164-208 30-70 (333)
445 4a2p_A RIG-I, retinoic acid in 55.7 19 0.00066 37.3 7.0 71 370-444 55-136 (556)
446 3qks_A DNA double-strand break 55.4 6.3 0.00022 35.0 2.7 25 164-190 25-49 (203)
447 2jaq_A Deoxyguanosine kinase; 55.2 4.7 0.00016 35.6 1.8 14 165-178 3-16 (205)
448 3pxg_A Negative regulator of g 55.2 6.4 0.00022 40.3 3.1 17 162-178 201-217 (468)
449 1ukz_A Uridylate kinase; trans 55.1 4.8 0.00016 35.6 1.9 15 164-178 17-31 (203)
450 1cke_A CK, MSSA, protein (cyti 55.0 4.7 0.00016 36.4 1.9 16 163-178 6-21 (227)
451 3mwy_W Chromo domain-containin 54.8 78 0.0027 34.7 12.0 106 173-299 555-667 (800)
452 2yz2_A Putative ABC transporte 54.7 4.3 0.00015 38.0 1.5 26 161-188 32-57 (266)
453 1gku_B Reverse gyrase, TOP-RG; 54.7 14 0.00048 42.1 6.0 74 369-444 98-181 (1054)
454 1g41_A Heat shock protein HSLU 54.6 5.3 0.00018 40.4 2.3 17 162-178 50-66 (444)
455 1jjv_A Dephospho-COA kinase; P 54.6 4.9 0.00017 35.7 1.9 14 165-178 5-18 (206)
456 2ihy_A ABC transporter, ATP-bi 54.6 4.2 0.00014 38.4 1.4 26 161-188 46-71 (279)
457 2pt5_A Shikimate kinase, SK; a 54.6 5 0.00017 34.1 1.8 15 164-178 2-16 (168)
458 2vli_A Antibiotic resistance p 54.6 4.1 0.00014 35.3 1.3 18 162-179 5-22 (183)
459 3eme_A Rhodanese-like domain p 54.5 8.4 0.00029 29.7 3.0 36 369-404 55-90 (103)
460 3sr0_A Adenylate kinase; phosp 54.4 5.6 0.00019 35.6 2.2 15 165-179 3-17 (206)
461 2if2_A Dephospho-COA kinase; a 54.4 4.8 0.00016 35.6 1.8 15 164-178 3-17 (204)
462 3a4m_A L-seryl-tRNA(SEC) kinas 54.2 4.9 0.00017 37.4 1.9 16 163-178 5-20 (260)
463 3rc3_A ATP-dependent RNA helic 54.2 27 0.00094 37.4 7.9 73 199-283 323-401 (677)
464 1wv9_A Rhodanese homolog TT165 54.2 12 0.0004 28.3 3.8 35 371-405 54-88 (94)
465 1zu4_A FTSY; GTPase, signal re 54.2 8.4 0.00029 37.1 3.6 17 162-178 105-121 (320)
466 4dzz_A Plasmid partitioning pr 54.0 21 0.0007 31.3 6.0 32 247-282 55-86 (206)
467 3k1j_A LON protease, ATP-depen 53.9 7.7 0.00026 41.2 3.6 31 156-188 54-84 (604)
468 2wwf_A Thymidilate kinase, put 53.8 5.1 0.00018 35.6 1.9 18 161-178 9-26 (212)
469 1ak2_A Adenylate kinase isoenz 53.4 5.3 0.00018 36.4 1.9 17 162-178 16-32 (233)
470 1sxj_A Activator 1 95 kDa subu 53.1 8.7 0.0003 39.9 3.7 41 270-312 147-189 (516)
471 2ghi_A Transport protein; mult 53.1 5 0.00017 37.4 1.7 26 161-188 45-70 (260)
472 2onk_A Molybdate/tungstate ABC 53.1 6.1 0.00021 36.3 2.3 23 164-188 26-48 (240)
473 2bbw_A Adenylate kinase 4, AK4 53.0 5.3 0.00018 36.7 1.9 17 162-178 27-43 (246)
474 1e4v_A Adenylate kinase; trans 52.9 5.3 0.00018 35.8 1.8 15 164-178 2-16 (214)
475 2qt1_A Nicotinamide riboside k 52.9 5.3 0.00018 35.5 1.8 17 162-178 21-37 (207)
476 1nn5_A Similar to deoxythymidy 52.9 5.5 0.00019 35.5 1.9 18 161-178 8-25 (215)
477 2pbr_A DTMP kinase, thymidylat 52.8 5.5 0.00019 34.8 1.9 14 165-178 3-16 (195)
478 3aez_A Pantothenate kinase; tr 52.4 11 0.00036 36.2 4.0 26 162-189 90-115 (312)
479 3be4_A Adenylate kinase; malar 52.4 5.6 0.00019 35.7 1.9 17 162-178 5-21 (217)
480 3tlx_A Adenylate kinase 2; str 52.4 5.6 0.00019 36.5 1.9 17 162-178 29-45 (243)
481 3umf_A Adenylate kinase; rossm 52.1 6.3 0.00021 35.6 2.1 18 162-179 29-46 (217)
482 1sky_E F1-ATPase, F1-ATP synth 51.8 8.9 0.0003 38.9 3.4 21 158-178 147-167 (473)
483 2z0h_A DTMP kinase, thymidylat 51.6 5.9 0.0002 34.7 1.9 14 165-178 3-16 (197)
484 2p5t_B PEZT; postsegregational 51.6 4.8 0.00016 37.3 1.3 16 163-178 33-48 (253)
485 2z83_A Helicase/nucleoside tri 51.3 12 0.0004 38.2 4.3 68 197-276 191-258 (459)
486 2xb4_A Adenylate kinase; ATP-b 51.2 5.9 0.0002 35.8 1.8 14 165-178 3-16 (223)
487 3fvq_A Fe(3+) IONS import ATP- 50.4 5.9 0.0002 38.8 1.8 26 161-188 29-54 (359)
488 3hix_A ALR3790 protein; rhodan 50.3 15 0.0005 28.5 3.8 36 369-404 51-87 (106)
489 2zu0_C Probable ATP-dependent 50.3 6.2 0.00021 36.9 1.9 25 161-187 45-69 (267)
490 3iwh_A Rhodanese-like domain p 50.2 11 0.00038 29.2 3.0 36 369-404 55-90 (103)
491 1np6_A Molybdopterin-guanine d 50.2 15 0.00052 31.6 4.2 23 164-187 8-30 (174)
492 1q57_A DNA primase/helicase; d 50.1 9.1 0.00031 39.5 3.3 50 161-216 241-290 (503)
493 3nzo_A UDP-N-acetylglucosamine 50.1 84 0.0029 30.9 10.4 90 154-253 27-119 (399)
494 2d2e_A SUFC protein; ABC-ATPas 49.8 6.3 0.00022 36.4 1.8 25 161-187 28-52 (250)
495 1uf9_A TT1252 protein; P-loop, 49.7 6.3 0.00021 34.7 1.7 15 164-178 10-24 (203)
496 2qi9_C Vitamin B12 import ATP- 49.4 6.1 0.00021 36.5 1.6 25 161-187 25-49 (249)
497 1odf_A YGR205W, hypothetical 3 49.2 8.6 0.00029 36.5 2.7 14 165-178 34-47 (290)
498 1sq5_A Pantothenate kinase; P- 48.9 13 0.00044 35.5 3.9 24 164-189 82-105 (308)
499 3d31_A Sulfate/molybdate ABC t 48.9 6.4 0.00022 38.4 1.7 31 269-299 143-173 (348)
500 3rlf_A Maltose/maltodextrin im 48.5 6.6 0.00023 38.8 1.8 37 159-201 26-62 (381)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-61 Score=502.92 Aligned_cols=363 Identities=33% Similarity=0.549 Sum_probs=322.0
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC--CCCCeE
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIR 198 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~ 198 (586)
+....+|.+++|++.+++++..+||..|+|+|.+++|.++.|+|++++||||||||++|++|++.++..... ...+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 345678999999999999999999999999999999999999999999999999999999999999887542 234668
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
+|||+|||+||.|+++.+.+++...++++..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++||+|
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC-CcccccCCeEEEc
Confidence 999999999999999999999888889999999999988888888889999999999999998775 4678999999999
Q ss_pred CcccccCCCcHHHHHHHHHHC--CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhh
Q 007879 279 EADRLLELGFSAEIHELVRLC--PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (586)
|||++++++|...+..++..+ +..+|+++||||+++.+..+...++.++..+...........+.+.+..+. ...
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~ 287 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN---KYA 287 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECC---GGG
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeC---cHH
Confidence 999999999999999999875 578899999999999999999999999988877665555556666666553 334
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 357 ~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
+...+..++..... ++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 288 k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi 366 (434)
T 2db3_A 288 KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 366 (434)
T ss_dssp HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc
Confidence 55566666655433 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEecc-CcHHHHHHHHHH
Q 007879 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKR 488 (586)
Q Consensus 437 ~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~-~d~~~~~~i~~~ 488 (586)
|+|++||+||+|.++..|+||+||+||.|+.|.+++|+++ .+...+..+.+.
T Consensus 367 ~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~ 419 (434)
T 2db3_A 367 KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKI 419 (434)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHH
T ss_pred ccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 455555555543
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.4e-58 Score=477.56 Aligned_cols=369 Identities=31% Similarity=0.515 Sum_probs=331.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.+++|++.+++++..+||..|+|+|.++++.++.|+++++++|||||||++|++|++..+.... .++++||++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~ 112 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV---RETQALILA 112 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS---CSCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc---CCceEEEEc
Confidence 45799999999999999999999999999999999999999999999999999999999998764322 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
||++|+.|+++.+..++...++.+..++|+.........+..+++|+|+||++|.+.+... .+.+..+++||+||||++
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEccHHHH
Confidence 9999999999999999988899999999999888877777788999999999999998775 566889999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (586)
.+++|...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.+..+... ..+...+..
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~ 269 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE--EWKFDTLCD 269 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--THHHHHHHH
T ss_pred HhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--HhHHHHHHH
Confidence 999999999999999999999999999999998888888888888776655444555666666655432 335556666
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE
Q 007879 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (586)
Q Consensus 364 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 443 (586)
++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 270 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 349 (410)
T 2j0s_A 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 (410)
T ss_dssp HHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE
Confidence 77666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccc
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~ 498 (586)
+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.++..+.....
T Consensus 350 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 350 NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred EECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 9999999999999999999999999999999999999999999999888776543
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-57 Score=473.90 Aligned_cols=365 Identities=36% Similarity=0.555 Sum_probs=317.6
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC--------
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-------- 192 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-------- 192 (586)
+....+|++++|++.++++|..+||..|+|+|.++++.++.|+++++++|||||||++|++|++..+.....
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 345677999999999999999999999999999999999999999999999999999999999998875431
Q ss_pred -------CCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcC
Q 007879 193 -------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265 (586)
Q Consensus 193 -------~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~ 265 (586)
....+++||++||++|+.|+++.+..++...++++..++|+.........+..+++|+|+||++|..++...
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~- 169 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG- 169 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC-
Confidence 112367999999999999999999999888899999999999988888888888999999999999988775
Q ss_pred CcCccCceEEEEeCcccccCCCcHHHHHHHHHH--CCC--CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCC
Q 007879 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341 (586)
Q Consensus 266 ~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~--~~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (586)
.+.+..+++|||||||++.+++|...+..++.. ++. ..|+++||||+++.+..+...++..+..+...........
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 467889999999999999999999999998874 332 5789999999999999999999998887776655555556
Q ss_pred ceEEEEEEecchhhhHHHHHHHHhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC
Q 007879 342 LTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (586)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 420 (586)
+.+.+..+. ...+...+..++... .++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+
T Consensus 250 i~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 250 ITQKVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp EEEEEEECC---GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred ceEEEEEec---cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 666665543 234455566666544 5678999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHh
Q 007879 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 421 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (586)
.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.+
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887777655
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1e-55 Score=458.96 Aligned_cols=365 Identities=33% Similarity=0.528 Sum_probs=323.2
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|++++|++.++++|..+||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+.... .+.++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~ 96 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL---NKIQALIMV 96 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc---CCccEEEEc
Confidence 46799999999999999999999999999999999999999999999999999999999998875432 245799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
|+++|+.|+++.+..+....++.+..++|+.........+...++|+|+||++|...+... ...+.++++||+||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 97 PTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-CcccccCCEEEEeCchHh
Confidence 9999999999999999888899999999998887777777788999999999999988764 456889999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (586)
.+.+|...+..++..++...|+++||||++..+...+...+..|..+...... ....+.+.+.... ...+...+..
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~k~~~l~~ 251 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-TLKGITQYYAFVE---ERQKLHCLNT 251 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSC-BCTTEEEEEEECC---GGGHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecccc-ccCCceeEEEEec---hhhHHHHHHH
Confidence 98888889999999999899999999999999999998888888776554332 2234444444332 3345556666
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE
Q 007879 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (586)
Q Consensus 364 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 443 (586)
++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 252 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 252 LFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred HHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 66666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccc
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~ 496 (586)
+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.++..+...
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 384 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEEC
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999999998877653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-56 Score=465.76 Aligned_cols=369 Identities=30% Similarity=0.511 Sum_probs=316.9
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
...+|.++++++.+++.+..+||..|+++|.++++.++.|+++++++|||||||++|++|+++.+.... .+.++||+
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil 114 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---KATQALVL 114 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS---CSCCEEEE
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC---CceeEEEE
Confidence 346799999999999999999999999999999999999999999999999999999999998875432 24579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 281 (586)
+||++|+.|+++.+..++...+..+..+.|+.........+. ..++|+|+||++|.+.+... .+.+..+++||+||||
T Consensus 115 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 115 APTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEAD 193 (414)
T ss_dssp CSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSHH
T ss_pred eChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccCcEEEEECHH
Confidence 999999999999999999888999999999988777666665 67899999999999998774 4667889999999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHH
Q 007879 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (586)
Q Consensus 282 ~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (586)
++.+++|...+..++..+++..|+++||||+++.+..+...++..+..+...........+.+.+..... ...+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 271 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER--EEWKLDTL 271 (414)
T ss_dssp HHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS--STTHHHHH
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeCh--HHhHHHHH
Confidence 9999999999999999999999999999999999999999999998888776665566666666665432 23456677
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccE
Q 007879 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (586)
Q Consensus 362 ~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 441 (586)
..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++
T Consensus 272 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~ 351 (414)
T 3eiq_A 272 CDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 351 (414)
T ss_dssp HHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSC
T ss_pred HHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCE
Confidence 77777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccccc
Q 007879 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (586)
Q Consensus 442 VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~ 497 (586)
||+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.++..+....
T Consensus 352 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (414)
T 3eiq_A 352 VINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 407 (414)
T ss_dssp EEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECC
T ss_pred EEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccC
Confidence 99999999999999999999999999999999999999999999998887776543
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7e-55 Score=454.44 Aligned_cols=368 Identities=29% Similarity=0.461 Sum_probs=319.6
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEE
Q 007879 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (586)
Q Consensus 122 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (586)
....+|.++++++.+++++..+||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.... .++++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~ 98 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQC 98 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---CCCCE
Confidence 44678999999999999999999999999999999999997 99999999999999999999998875443 24579
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhc-CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 200 LILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 200 lil~Ptr~La~Q~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
||++||++|+.|+++.+..+... .++.+....++...... ....++|+|+||++|..++.....+.+.++++||||
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 99999999999999999998776 36788888877654322 244679999999999999977656778999999999
Q ss_pred CcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhH
Q 007879 279 EADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (586)
Q Consensus 279 Eah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (586)
|||++.. +++...+..+...++...|++++|||+++.+..+....+..+..+...........+.+.+..... ...+
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 253 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEK 253 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS--HHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC--hHHH
Confidence 9999986 788889999999999999999999999999999999999988887766555555566665555432 3445
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCC
Q 007879 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (586)
Q Consensus 358 ~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 437 (586)
...+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCcc
Confidence 56667777766778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCC------ChhHHHHHhhhcccCCCcceEEEEeccCc-HHHHHHHHHHhcCcccccc
Q 007879 438 GVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRI 497 (586)
Q Consensus 438 ~v~~VI~~~~p~------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d-~~~~~~i~~~~~~~~~~~~ 497 (586)
++++||+|++|+ +...|+||+||+||.|+.|.|++++++.+ ...++.+.+.++..+....
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 999999999995 56899999999999999999999998764 7888899998887776543
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.9e-54 Score=447.98 Aligned_cols=365 Identities=32% Similarity=0.560 Sum_probs=317.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 125 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
.+|++++|++.++++|..+||..|+|+|.++++.++.|+++++.+|||+|||++|++|++..+.... .++++||++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~P 84 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVMCH 84 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT---TCCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC---CCeeEEEECC
Confidence 5699999999999999999999999999999999999999999999999999999999998765432 2457999999
Q ss_pred cHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
|++|+.|+++.+..+.... ++++..++|+.........+. ..++|+|+||++|...+... ...+.++++||+||||+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDK 163 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCSEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccccccCEEEEeCHHH
Confidence 9999999999999987765 789999999988776665554 34799999999999988764 46688999999999999
Q ss_pred ccCC-CcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCC-CCCCceEEEEEEecchhhhHHHH
Q 007879 283 LLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK-RPSTLTEEVVRIRRMREVNQEAV 360 (586)
Q Consensus 283 l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 360 (586)
+.++ ++...+..++...+...|++++|||+++.+..++..++..|..+....... ....+.+.+.... ...+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 240 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK---DNEKNRK 240 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC---GGGHHHH
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC---chhHHHH
Confidence 9885 688888889999999999999999999999999999999888776654332 2234455444432 3445556
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCcc
Q 007879 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (586)
Q Consensus 361 l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 440 (586)
+..++....++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 66677666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccC-cHHHHHHHHHHhcCccccc
Q 007879 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 441 ~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-d~~~~~~i~~~~~~~~~~~ 496 (586)
+||+|++|+++..|+||+||+||.|++|.|++|+++. +...++.+.+.++.++...
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 377 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEEC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhC
Confidence 9999999999999999999999999999999999876 5577888888887776543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.5e-54 Score=447.64 Aligned_cols=361 Identities=33% Similarity=0.513 Sum_probs=313.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vli 201 (586)
..+|++++|++.+++++..+||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.... .++++||
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~li 80 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---ASPQAIC 80 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC---CSCCEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC---CCccEEE
Confidence 478999999999999999999999999999999999998 99999999999999999999998875432 2457999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcc
Q 007879 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (586)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 281 (586)
++||++|+.|+++.+..+....++.+...+++..... ...+++|+|+||++|...+... ...+.++++||+||||
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEAD 155 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT-CBCCTTCCEEEEETHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC-CcccccCCEEEEEChh
Confidence 9999999999999999998888888888887754322 1336899999999999988764 4668899999999999
Q ss_pred cccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHH
Q 007879 282 RLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360 (586)
Q Consensus 282 ~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (586)
++.+ +++...+..+...++...|++++|||+++.+..+....+..+..+...........+.+.+.... ....+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 233 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK--NEADKFDV 233 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS--SHHHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC--chHHHHHH
Confidence 9987 78889999999999999999999999999999999999888877766554444445555544432 23445566
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCcc
Q 007879 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (586)
Q Consensus 361 l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 440 (586)
+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 313 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCC
Confidence 66777777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC------ChhHHHHHhhhcccCCCcceEEEEeccC-cHHHHHHHHHHhc-Cccc
Q 007879 441 TVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAG-SKLK 494 (586)
Q Consensus 441 ~VI~~~~p~------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-d~~~~~~i~~~~~-~~~~ 494 (586)
+||+|++|+ ++..|+||+||+||.|+.|.+++|+... +...++.+.+.++ ..+.
T Consensus 314 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 375 (395)
T 3pey_A 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMT 375 (395)
T ss_dssp EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCE
T ss_pred EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceee
Confidence 999999999 9999999999999999999999999875 4667777887776 4443
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.7e-55 Score=472.64 Aligned_cols=364 Identities=29% Similarity=0.485 Sum_probs=303.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-CCCCeEEEEEcCcHHH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTREL 208 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vlil~Ptr~L 208 (586)
|++.+++++..+||..|+|+|.++++.++ .|++++++||||+|||++|++|+++.+..... ...++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 78899999999999999999999999877542 2235689999999999
Q ss_pred HHHHHHHHHHHhh----cCCceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 209 AVQVHSMIEKIAQ----FTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 209 a~Q~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
|.|+++.+..+.. ...+.+..+.|+.........+. .+++|+|+||++|++++.......+..+++|||||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999999863 34577888899888777666553 478999999999999887643345788999999999999
Q ss_pred cCCCcHHHHHHHHHHCC-------CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCC----CCCCCceEEEEEEecc
Q 007879 284 LELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM 352 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 352 (586)
++++|...+..++..++ ..+|+++||||+++.+..++..++..+..+...... .....+.+.+......
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 99999999888877653 367999999999999999988888887665543221 1222344444433321
Q ss_pred hhh--hHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhc---CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEe
Q 007879 353 REV--NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (586)
Q Consensus 353 ~~~--~~~~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLva 426 (586)
... .....+...+. ...+.++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 111 11122222222 255789999999999999999999877 899999999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 427 T~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
|+++++|||+|+|++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...++.+.+..+..+..
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887766654
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1e-56 Score=476.91 Aligned_cols=365 Identities=29% Similarity=0.466 Sum_probs=179.7
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vl 200 (586)
...+|.+++|++.+++++..+||..|+|+|.++++.++.+ +++|++||||||||++|++|++..+.... .++++|
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~---~~~~~l 166 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCL 166 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS---CSCCEE
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC---CCCcEE
Confidence 4568999999999999999999999999999999999997 89999999999999999999998875433 245799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 201 il~Ptr~La~Q~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
||+||++|+.|+++.+..+..+ .++.+.+..++...... ....++|+|+||++|++++.+...+.+.++++|||||
T Consensus 167 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred EEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEEC
Confidence 9999999999999999998876 36777777777554321 2345799999999999999876667789999999999
Q ss_pred cccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHH
Q 007879 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (586)
Q Consensus 280 ah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (586)
||++++ +++...+..+.+.++..+|+++||||+++.+..+...++..|..+...........+.+.++.+.. ...+.
T Consensus 244 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~ 321 (479)
T 3fmp_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEKF 321 (479)
T ss_dssp HHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------
T ss_pred HHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC--HHHHH
Confidence 999986 688889999999999999999999999999999999999988888776655555555555554432 23344
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCC
Q 007879 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (586)
Q Consensus 359 ~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~ 438 (586)
..+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 322 ~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 322 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 55666666666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCC------ChhHHHHHhhhcccCCCcceEEEEeccCc-HHHHHHHHHHhcCcccc
Q 007879 439 VQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 439 v~~VI~~~~p~------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d-~~~~~~i~~~~~~~~~~ 495 (586)
+++||+||+|. +...|+||+||+||.|+.|.|++|+++.+ ...++.+.+.++..+..
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 465 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIER 465 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceE
Confidence 99999999995 56899999999999999999999998765 77778887776665544
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-53 Score=438.05 Aligned_cols=359 Identities=35% Similarity=0.572 Sum_probs=315.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
..+|.+++|++.++++|..+||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++..+... ++.++||+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~----~~~~~lil 80 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN----NGIEAIIL 80 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS----SSCCEEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc----CCCcEEEE
Confidence 356999999999999999999999999999999999998 6999999999999999999998876442 24479999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+|+++|+.|+++.+..+....++.+..++|+.........+. .++|+|+||++|...+... .+.+.++++||+||||+
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG-TLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-CSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-CcccccCCEEEEeCchH
Confidence 999999999999999998888889999999988766655554 6899999999999988764 45688999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
+.++++...+..++..+++..+++++|||+++........++..+..+.... ...+.+.+.... ...+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~l~ 231 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVN---ENERFEALC 231 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECC---GGGHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeC---hHHHHHHHH
Confidence 9999999999999999999999999999999998888888887765554322 224445444442 334455555
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
.++. ..+.++||||+++..++.++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 232 ~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 232 RLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 5555 456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccc
Q 007879 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 443 I~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~ 496 (586)
|++++|+++..|+||+||+||.|++|.+++++++.+...++.+.+.++.++...
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 999999999999999999999999999999999999999999999988877653
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.1e-54 Score=467.30 Aligned_cols=364 Identities=29% Similarity=0.487 Sum_probs=302.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-CCCCeEEEEEcCcHHH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTREL 208 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vlil~Ptr~L 208 (586)
|++.+++++..+||..|+|+|.++++.++ .++++|++||||||||++|++|+++.+..... ...++++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 67899999999999999999999999887542 2234689999999999
Q ss_pred HHHHHHHHHHHhhc----CCceEEEEeCCCChHHHHHHh-cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 209 AVQVHSMIEKIAQF----TDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 209 a~Q~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
|.|+++.+..+... ....+..+.|+.........+ ..+++|+|+||++|.+++.......+..+++|||||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987543 356788888988877666555 4478999999999999887643345788999999999999
Q ss_pred cCCCcHHHHHHHHHHCC-------CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCC----CCCCCceEEEEEEecc
Q 007879 284 LELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM 352 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 352 (586)
++++|...+..+...++ ..+|+++||||+++.+..++..++..+..+...... .....+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999999888876653 367999999999999999888888877665543221 1222334444433221
Q ss_pred hhh--hHHHHHHHHh-hccCCceEEEEeccHHHHHHHHHHHhhc---CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEe
Q 007879 353 REV--NQEAVLLSLC-SKTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (586)
Q Consensus 353 ~~~--~~~~~l~~~~-~~~~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLva 426 (586)
... .....+...+ ....+.++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 111 1111222222 2355789999999999999999999876 899999999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 427 T~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
|+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+...++.+.+..+..+..
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887766654
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-55 Score=456.47 Aligned_cols=365 Identities=30% Similarity=0.510 Sum_probs=184.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.+++|++.+++++..+||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+.... .++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC---CSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC---CCCCEEEEc
Confidence 45799999999999999999999999999999999999999999999999999999999998875432 345799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
||++|+.|+++.+..+....++++..++|+.........+. +++|+|+||++|...+... .+.+.++++||+||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC-CcchhhCcEEEEEChHHh
Confidence 99999999999999998888899999999988766555444 5799999999999988764 466789999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (586)
.++++...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.+..+.. ...+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE--EEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCc--hhhHHHHHHH
Confidence 99999999999999999999999999999999999998899988887765544444444444443322 1223444555
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE
Q 007879 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (586)
Q Consensus 364 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI 443 (586)
++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 55555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.++..+..
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 384 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEE 384 (394)
T ss_dssp ----------------------------------------------------
T ss_pred EeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccc
Confidence 9999999999999999999999999999999999988888888776665543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.9e-52 Score=419.76 Aligned_cols=335 Identities=38% Similarity=0.599 Sum_probs=288.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q 211 (586)
|++.+.+++..+||..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. +.++||++|+++|+.|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998864 2369999999999999
Q ss_pred HHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHH
Q 007879 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291 (586)
Q Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~ 291 (586)
+++.+..+....+..+..++|+.........+.. ++|+|+||++|...+... .+.+.++++||+||||++.++++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKG-VIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTT-SCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcC-CcchhhCcEEEEEChHHhhccccHHH
Confidence 9999999988888999999999887766655544 899999999999988764 45688999999999999999999999
Q ss_pred HHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCc
Q 007879 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371 (586)
Q Consensus 292 i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 371 (586)
+..++...+...+++++|||+++.+...+..++..+..+... .....+.+.+..+.... ......+....++
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 221 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW-----RSKVQALRENKDK 221 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS-----HHHHHHHHTCCCS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH-----HHHHHHHHhCCCC
Confidence 999999999999999999999999999888888887665432 22233444444433211 1122444556678
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCCh
Q 007879 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~ 451 (586)
++||||+++..++.++..|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999999886 68899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhc
Q 007879 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490 (586)
Q Consensus 452 ~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~ 490 (586)
..|+||+||+||.|++|.|++|+. .+...++.+.+.++
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999 88888888776543
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.7e-51 Score=441.79 Aligned_cols=342 Identities=16% Similarity=0.228 Sum_probs=278.1
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 128 MELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 128 ~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
.++++++.+.+.|+. +||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++.. .+++|||+|++
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------~g~~lVisP~~ 94 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------DGFTLVICPLI 94 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------SSEEEEECSCH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------CCcEEEEeCHH
Confidence 457899999999998 79999999999999999999999999999999999999999753 24799999999
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH------hcCCCcEEEECcHHHH------HHHHhcCCcCccCceE
Q 007879 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA------LRSMPDIVVATPGRMI------DHLRNSMSVDLDDLAV 274 (586)
Q Consensus 207 ~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ili~Tp~~l~------~~l~~~~~~~l~~~~~ 274 (586)
+|+.|+.+.+..+ ++.+..++|+......... ....++|+|+||++|. +.+.. ...+.++++
T Consensus 95 ~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~ 168 (591)
T 2v1x_A 95 SLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTR 168 (591)
T ss_dssp HHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEE
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcE
Confidence 9999999999886 7888899998876654332 2457899999999874 23332 234678999
Q ss_pred EEEeCcccccCCC--cHHHHHH--HHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEe
Q 007879 275 LILDEADRLLELG--FSAEIHE--LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350 (586)
Q Consensus 275 lViDEah~l~~~~--~~~~i~~--i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (586)
|||||||++++|| |...+.. .+....+..|+++||||+++.+...+...+..+..........++ .+...+...
T Consensus 169 iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~- 246 (591)
T 2v1x_A 169 IAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYYEVRQK- 246 (591)
T ss_dssp EEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEEEEEEC-
T ss_pred EEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEEEEEeC-
Confidence 9999999999998 6655543 233334578999999999999888777776654333333232222 333332221
Q ss_pred cchhhhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc
Q 007879 351 RMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (586)
Q Consensus 351 ~~~~~~~~~~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 429 (586)
..........+..++. ...+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a 326 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA 326 (591)
T ss_dssp CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 1112233344555554 335789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHH
Q 007879 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 430 ~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~ 486 (586)
+++|||+|+|++||+|++|.|+..|+||+||+||.|++|.|++|+++.|...+..+.
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766654
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.8e-50 Score=427.31 Aligned_cols=341 Identities=20% Similarity=0.270 Sum_probs=277.2
Q ss_pred CCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 125 NSFMELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 125 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
.+|++++|++.+.+.|+. +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~ 72 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVS 72 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEEC
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEEC
Confidence 468899999999999998 89999999999999999999999999999999999999999853 23699999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH----HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
|+++|+.|+.+.+..+ ++.+..++++........ ...+.++|+|+||++|....... .+...++.+|||||
T Consensus 73 P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vViDE 147 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAVDE 147 (523)
T ss_dssp SCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEESS
T ss_pred ChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEEEeC
Confidence 9999999999988874 778888888877654332 23456899999999995321111 13347899999999
Q ss_pred cccccCCC--cHHHHH---HHHHHCCCCCcEEEEeecCchhHHHHHHHh--cCCCeEEeeCCCCCCCCCceEEEEEEecc
Q 007879 280 ADRLLELG--FSAEIH---ELVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRM 352 (586)
Q Consensus 280 ah~l~~~~--~~~~i~---~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (586)
||++.+|| |...+. .+...+| ..+++++|||+++.+...+... +..+..+.. ...+ +.+...+..
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r-~~l~~~v~~---- 219 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDR-PNIRYMLME---- 219 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC--CCCC-TTEEEEEEE----
T ss_pred ccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC--CCCC-CceEEEEEe----
Confidence 99999988 555443 3455554 5889999999998876644433 344443322 1222 233322221
Q ss_pred hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 007879 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (586)
Q Consensus 353 ~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 432 (586)
...+...+..++....+.++||||+|+..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 220 -~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 -KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp -CSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred -CCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 1233445666666666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHH
Q 007879 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (586)
Q Consensus 433 Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~ 488 (586)
|||+|+|++||+|++|.|+..|+||+||+||.|.+|.|++|+++.|...++.+...
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998887776653
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.8e-50 Score=419.52 Aligned_cols=347 Identities=18% Similarity=0.237 Sum_probs=271.1
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 007879 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (586)
Q Consensus 135 ~l~~~l~~-~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~ 213 (586)
.+.+.++. +|| .|+|+|.++++.++.|+++++++|||||||++|++|++..+. .++++|||+||++|+.|++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~------~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc------CCCEEEEEECCHHHHHHHH
Confidence 34445554 466 699999999999999999999999999999999888877651 2447999999999999999
Q ss_pred HHHHHHhhcCCceEEEEeCCCCh---HHHHHHhcCC-CcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC----
Q 007879 214 SMIEKIAQFTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE---- 285 (586)
Q Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~---- 285 (586)
+.+..++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch
Confidence 99999877 78999999999987 4444555554 99999999999888764 5567999999999987654
Q ss_pred -------CCcHHH-HHHHHHHCC-----------CCCcEEEEeec-CchhHH-HHHHHhcCCCeEEeeCCCCCCCCCceE
Q 007879 286 -------LGFSAE-IHELVRLCP-----------KRRQTMLFSAT-LTEDVD-ELIKLSLTKPLRLSADPSAKRPSTLTE 344 (586)
Q Consensus 286 -------~~~~~~-i~~i~~~~~-----------~~~q~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (586)
++|... +..++..++ ...|++++||| ++..+. .+....+. +...........+.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 667666 777888776 78999999999 454433 22222222 112222223334444
Q ss_pred EEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceE-EecCCCCHHHHHHHHHHHhcCCCcE
Q 007879 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDF 423 (586)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~-~l~~~~~~~~r~~~~~~f~~g~~~v 423 (586)
.+... .+...+..++.. .++++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+.+|
T Consensus 234 ~~~~~------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 234 VRISS------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEESS------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred eeecc------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 44332 233444555554 358999999999999999999999999998 99984 444 99999999999
Q ss_pred EEe----cCcccccCCCCC-ccEEEEeCCC--CChhHHHHHhhhcccCC----CcceEEEEeccCcHHHHHHHHHHhc--
Q 007879 424 LIA----TDVAARGLDIIG-VQTVINYACP--RDLTSYVHRVGRTARAG----REGYAVTFVTDNDRSLLKAIAKRAG-- 490 (586)
Q Consensus 424 Lva----T~~~~~Gldi~~-v~~VI~~~~p--~s~~~y~Qr~GR~gR~g----~~g~~~~l~~~~d~~~~~~i~~~~~-- 490 (586)
||| |+++++|+|+|+ |++||+|++| .++..|+||+||+||.| +.|.+++|+ .+...++.+.+.++
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~ 378 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLI 378 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhccc
Confidence 999 999999999999 9999999999 99999999999999987 589999998 77888888888777
Q ss_pred CccccccchhhhHHHHHHHHH
Q 007879 491 SKLKSRIVAEQSITKWSKIIE 511 (586)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~ 511 (586)
.++....+....+..+...+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3oiy_A 379 AEEEIIEEAEANWKELVHEVE 399 (414)
T ss_dssp HCCCEEEGGGCCHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHH
Confidence 666655555555544444433
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-51 Score=435.49 Aligned_cols=361 Identities=28% Similarity=0.448 Sum_probs=262.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
.|...++++.+++.+...|+..|+++|.++++.++.| +++++++|||||||++|+++++..+.... .++++|||+
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~---~~~~vLvl~ 196 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV---PKPQAICLA 196 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC---CSCCEEEEC
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC---CCceEEEEE
Confidence 4556688999999999999999999999999999998 99999999999999999999998875543 245799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
|+++|+.|+++.+..+....++.+....++.... .....++|+|+||++|...+... .+.+.++++|||||||++
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~-~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRR-QLDARDIKVFVLDEADNM 271 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEECCHHHH
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcC-CccccCCCEEEEechhhh
Confidence 9999999999999998877776666555543322 12346899999999999988764 466889999999999999
Q ss_pred cC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 284 LE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 284 ~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
.+ +++...+..+...++...|++++|||+++.+..+...++..+..+...........+.+.+.... ....+...+.
T Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~ 349 (508)
T 3fho_A 272 LDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ--SEEHKYNVLV 349 (508)
T ss_dssp TTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC----CHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECC--chHHHHHHHH
Confidence 87 67999999999999999999999999999999999999988877766555444445555554443 2334555666
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V 442 (586)
.++....++++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 350 ~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~V 429 (508)
T 3fho_A 350 ELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLV 429 (508)
T ss_dssp HHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEE
T ss_pred HHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEE
Confidence 67776677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC------CChhHHHHHhhhcccCCCcceEEEEecc-CcHHHHHHHHHHhcCccccc
Q 007879 443 INYACP------RDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 443 I~~~~p------~s~~~y~Qr~GR~gR~g~~g~~~~l~~~-~d~~~~~~i~~~~~~~~~~~ 496 (586)
|++++| .++..|+||+||+||.|++|.|++|+.+ .+...++.+.+.++..+...
T Consensus 430 I~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 430 VNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRV 490 (508)
T ss_dssp EC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--
T ss_pred EEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccC
Confidence 999999 7899999999999999999999999984 56677888888877766653
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-50 Score=456.26 Aligned_cols=344 Identities=18% Similarity=0.200 Sum_probs=270.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 125 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
..|..+++++.+...+...++..|+++|.++++.++.|+++|++||||||||++|.+|++..+.. ++++||++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~------g~rvlvl~P 235 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN------KQRVIYTSP 235 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc------CCeEEEEcC
Confidence 45666777776666666666667999999999999999999999999999999999999988743 347999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
|++|+.|+++.+..++. .+++++|+.+. ...++|+|+||++|.+++... ...+.++++|||||||++.
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEETGGGTT
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhhhhhcc
Confidence 99999999999998653 67788888763 456899999999999998875 3457899999999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCcEEEEeecCchh--HHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEE---------ecch
Q 007879 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTED--VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI---------RRMR 353 (586)
Q Consensus 285 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 353 (586)
++++...+..++..++..+|+|+||||+++. +..++......+..+..... ++..+.+.+... ....
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999998764 44666666666655544322 222333322110 0000
Q ss_pred h-------------------------------------------hhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHH
Q 007879 354 E-------------------------------------------VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390 (586)
Q Consensus 354 ~-------------------------------------------~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l 390 (586)
. ......+...+.....+++||||+++..|+.++..|
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHH
Confidence 0 112222333444455679999999999999999998
Q ss_pred hhcCCc---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccc
Q 007879 391 GLAALK---------------------------------------AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (586)
Q Consensus 391 ~~~~~~---------------------------------------~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 431 (586)
...++. ++.+||+|++.+|..++..|++|.++|||||++++
T Consensus 462 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla 541 (1108)
T 3l9o_A 462 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 541 (1108)
T ss_dssp CSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh
Confidence 653322 78999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCCCC--------ChhHHHHHhhhcccCC--CcceEEEEeccC-cHHHHHHHHHH
Q 007879 432 RGLDIIGVQTVINYACPR--------DLTSYVHRVGRTARAG--REGYAVTFVTDN-DRSLLKAIAKR 488 (586)
Q Consensus 432 ~Gldi~~v~~VI~~~~p~--------s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~-d~~~~~~i~~~ 488 (586)
+|||+|++++||+++.|+ ++..|+||+|||||.| ..|.|++++.+. +...+..+...
T Consensus 542 ~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 542 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp SCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred cCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 999999999999877643 6778999999999999 689999998875 45566666543
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-46 Score=403.65 Aligned_cols=325 Identities=20% Similarity=0.225 Sum_probs=251.0
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.+|| +|+|+|..++|.++.|+ |+.++||+|||++|.+|++...+. +..|+||+||++||.|+++++..++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~------g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT------GKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT------SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4799 89999999999999999 999999999999999999855443 23599999999999999999999999
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcC-----CcCccCceEEEEeCccccc-CCC-------
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG------- 287 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~l~~~~~lViDEah~l~-~~~------- 287 (586)
+.++++++++||.+...+.. ..++||+|+||++| +++|.... .+.++.+.++||||||+|+ +.+
T Consensus 150 ~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp HTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 99999999999988655443 34689999999999 77776542 3557899999999999998 553
Q ss_pred --------cHHHHHHHHHHCC---------CCCcEE-----------------EEeecCch---hHHHHHH--HhcC-CC
Q 007879 288 --------FSAEIHELVRLCP---------KRRQTM-----------------LFSATLTE---DVDELIK--LSLT-KP 327 (586)
Q Consensus 288 --------~~~~i~~i~~~~~---------~~~q~i-----------------~~SAT~~~---~~~~~~~--~~~~-~~ 327 (586)
|...+..++..++ +.+|++ ++|||++. .+...+. ..+. ++
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 307 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDV 307 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 6788888998887 467887 89999763 3332221 1121 11
Q ss_pred eEEe-------eC-----------------------------CCCCCCCCceE---------------------------
Q 007879 328 LRLS-------AD-----------------------------PSAKRPSTLTE--------------------------- 344 (586)
Q Consensus 328 ~~~~-------~~-----------------------------~~~~~~~~~~~--------------------------- 344 (586)
-.+. ++ ........+.+
T Consensus 308 dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~i 387 (844)
T 1tf5_A 308 DYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNI 387 (844)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHH
Confidence 0000 00 00000000000
Q ss_pred ---EEEEEe--------------cchhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCC
Q 007879 345 ---EVVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (586)
Q Consensus 345 ---~~~~~~--------------~~~~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~ 405 (586)
.++.++ ......+...+...+.. ..+.++||||+|+..++.|+..|...|+++..|||++.
T Consensus 388 Y~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 388 YNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH 467 (844)
T ss_dssp HCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH
T ss_pred hCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc
Confidence 000010 01234455566655542 34678999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCcccccCCCC--------CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccC
Q 007879 406 QAQRLEALELFRKQHVDFLIATDVAARGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (586)
Q Consensus 406 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~--------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 477 (586)
+.+|..+...|+.| .|+|||++|+||+||+ ++.+||+|++|.+...|+||+|||||+|.+|.+++|++..
T Consensus 468 ~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~e 545 (844)
T 1tf5_A 468 EREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSME 545 (844)
T ss_dssp HHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred HHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHH
Confidence 88887666666555 6999999999999999 8899999999999999999999999999999999999987
Q ss_pred cH
Q 007879 478 DR 479 (586)
Q Consensus 478 d~ 479 (586)
|.
T Consensus 546 D~ 547 (844)
T 1tf5_A 546 DE 547 (844)
T ss_dssp SS
T ss_pred HH
Confidence 63
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1e-46 Score=408.49 Aligned_cols=336 Identities=17% Similarity=0.184 Sum_probs=201.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 007879 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (586)
Q Consensus 144 ~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~ 223 (586)
+...|+|+|.++++.++.|+++++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+++.+..++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc-cCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3457999999999999999999999999999999999999988876542 224579999999999999999999998888
Q ss_pred CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHH-HHHHH----
Q 007879 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH-ELVRL---- 298 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~-~i~~~---- 298 (586)
++++..++|+.........+..+++|+|+||++|.+++.......+.++++|||||||++.+++....+. .++..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999876666666666789999999999999987533368899999999999999887543332 22222
Q ss_pred CCCCCcEEEEeecCchh-----------HHHHHHHhc------------------CCCeEEeeCCCCCCCCCceE-----
Q 007879 299 CPKRRQTMLFSATLTED-----------VDELIKLSL------------------TKPLRLSADPSAKRPSTLTE----- 344 (586)
Q Consensus 299 ~~~~~q~i~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~----- 344 (586)
..+..|+++||||++.. +..+..... ..|..............+..
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 13568899999999531 111211111 11111110000000000000
Q ss_pred ---------------EEEE-----Eec------c----------------------------------------------
Q 007879 345 ---------------EVVR-----IRR------M---------------------------------------------- 352 (586)
Q Consensus 345 ---------------~~~~-----~~~------~---------------------------------------------- 352 (586)
.+.. +.. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 0000 000 0
Q ss_pred ----------------------------------------------hhhhHHHHHHHHhhc----cCCceEEEEeccHHH
Q 007879 353 ----------------------------------------------REVNQEAVLLSLCSK----TFTSKVIIFSGTKQA 382 (586)
Q Consensus 353 ----------------------------------------------~~~~~~~~l~~~~~~----~~~~~~lIF~~s~~~ 382 (586)
....+...+..++.. ..+.++||||+++..
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 001122223333322 457899999999999
Q ss_pred HHHHHHHHhhc------------CCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCcccccCCCCCccEEEEeCCCC
Q 007879 383 AHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPR 449 (586)
Q Consensus 383 ~~~l~~~l~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~ 449 (586)
++.+..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999765 4556667888999999999999999 9999999999999999999999999999999
Q ss_pred ChhHHHHHhhhcccCCCcceEEEEeccCcHHHH
Q 007879 450 DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (586)
Q Consensus 450 s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~ 482 (586)
|+..|+||+|| ||. ++|.+++|++..+....
T Consensus 483 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 483 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp CHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999 998 78999999998765433
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.6e-47 Score=419.06 Aligned_cols=346 Identities=19% Similarity=0.232 Sum_probs=223.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 007879 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (586)
Q Consensus 137 ~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~ 216 (586)
..++..+|+..|+++|.+++++++.|+++|+++|||+|||++|++|+++.+...+.. .++++|||+||++|+.|+.+.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT-CCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC-CCCeEEEEECCHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999888765432 2357999999999999999999
Q ss_pred HHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-cHHHHHHH
Q 007879 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHEL 295 (586)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i 295 (586)
.+++...++++..++|+.........+..+++|+|+||++|.+.+.......+.++++|||||||++.+.. +...+..+
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99987779999999998866555555556789999999999999987533368899999999999998665 22223223
Q ss_pred HHH-----CCCCCcEEEEeecCc-------hhH-HHHHHH---------------------hcCCCeEEeeCCCCCCCCC
Q 007879 296 VRL-----CPKRRQTMLFSATLT-------EDV-DELIKL---------------------SLTKPLRLSADPSAKRPST 341 (586)
Q Consensus 296 ~~~-----~~~~~q~i~~SAT~~-------~~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 341 (586)
+.. .+...++++||||+. ... ..+... +...|..............
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 322 246789999999997 121 111111 1111211100000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007879 342 -------------------------------------------------------------------------------- 341 (586)
Q Consensus 342 -------------------------------------------------------------------------------- 341 (586)
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence
Q ss_pred -------------------------------ceEEEEE-------------EecchhhhHHHHHHHHhhcc----CCceE
Q 007879 342 -------------------------------LTEEVVR-------------IRRMREVNQEAVLLSLCSKT----FTSKV 373 (586)
Q Consensus 342 -------------------------------~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~----~~~~~ 373 (586)
+.+.+.. ........+...+..++... .++++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 0000000 00000122333444444432 56799
Q ss_pred EEEeccHHHHHHHHHHHhhcC----CceEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEecCcccccCCCCCcc
Q 007879 374 IIFSGTKQAAHRLKILFGLAA----LKAAEL--------HGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQ 440 (586)
Q Consensus 374 lIF~~s~~~~~~l~~~l~~~~----~~~~~l--------~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~ 440 (586)
||||+++..++.++.+|...+ +++..+ ||+|++.+|..+++.|++ |..+|||||+++++|||+|+|+
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999887 888888 559999999999999998 9999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHH
Q 007879 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (586)
Q Consensus 441 ~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i 485 (586)
+||+||+|+|+..|+||+|| ||. +.|.++++++..+......+
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999 998 68999999998876555544
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.8e-46 Score=423.67 Aligned_cols=345 Identities=18% Similarity=0.227 Sum_probs=266.2
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.+|| .|+|+|.++++.++.|+|++++||||||||++|+++++..+. .++++|||+||++||.|+++.+..++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~------~~~~~Lil~PtreLa~Q~~~~l~~l~- 145 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTLERLQKLA- 145 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHHHHHHTTS-
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh------cCCeEEEEechHHHHHHHHHHHHHhh-
Confidence 3688 599999999999999999999999999999988777776652 23479999999999999999999977
Q ss_pred cCCceEEEEeCCCCh---HHHHHHhcCC-CcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC-----------C
Q 007879 222 FTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-----------L 286 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-----------~ 286 (586)
..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.. +
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999887 5555666665 99999999999888764 5577999999999987554 7
Q ss_pred CcHHH-HHHHHHHCC-----------CCCcEEEEeecC-chhHHH-HHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecc
Q 007879 287 GFSAE-IHELVRLCP-----------KRRQTMLFSATL-TEDVDE-LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352 (586)
Q Consensus 287 ~~~~~-i~~i~~~~~-----------~~~q~i~~SAT~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (586)
||... +..++..++ ...|+++||||+ +..+.. +....+. +.+.........+.+.++..
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 88877 888888877 789999999994 444332 2333322 22222223344555555433
Q ss_pred hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceE-EecCCCCHHHHHHHHHHHhcCCCcEEEe----c
Q 007879 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDFLIA----T 427 (586)
Q Consensus 353 ~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~-~l~~~~~~~~r~~~~~~f~~g~~~vLva----T 427 (586)
.+...+..++.. .++++||||+++..++.++..|...++.+. .+|| +|.+ ++.|++|+.+|||| |
T Consensus 296 ---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 ---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp ---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred ---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 233444555554 358999999999999999999999999998 9999 2555 99999999999999 9
Q ss_pred CcccccCCCCC-ccEEEEeCCCC---------------------------------------------------------
Q 007879 428 DVAARGLDIIG-VQTVINYACPR--------------------------------------------------------- 449 (586)
Q Consensus 428 ~~~~~Gldi~~-v~~VI~~~~p~--------------------------------------------------------- 449 (586)
+++++|||+|+ |++|||||+|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~ 445 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMF 445 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred CeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 99999999999 99999999998
Q ss_pred ---------------ChhHHHHHhhhcccCCC--cceEEEEeccCcHHHHHHHHHHhc--CccccccchhhhHHHHHHHH
Q 007879 450 ---------------DLTSYVHRVGRTARAGR--EGYAVTFVTDNDRSLLKAIAKRAG--SKLKSRIVAEQSITKWSKII 510 (586)
Q Consensus 450 ---------------s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~d~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 510 (586)
++.+|+||+|||||.|. -+.+++++..+|...++.|.+.++ ..+.-..+.+..+..+.+.+
T Consensus 446 ~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 525 (1104)
T 4ddu_A 446 RGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEV 525 (1104)
T ss_dssp CSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHH
T ss_pred ceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCHHHHHHHH
Confidence 77899999999999553 223444444588888888888765 33443444444454444444
Q ss_pred HHHH
Q 007879 511 EQME 514 (586)
Q Consensus 511 ~~~~ 514 (586)
.+..
T Consensus 526 ~~~r 529 (1104)
T 4ddu_A 526 EESR 529 (1104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 3333
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=8.9e-46 Score=400.95 Aligned_cols=333 Identities=19% Similarity=0.174 Sum_probs=229.7
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
+|+|+|.++++.++.|+++++++|||+|||++|++|++..+..... ..++++|||+||++|+.|+++.+..++...+++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 5999999999999999999999999999999999999998876542 224579999999999999999999998888999
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCc-HHHHHHHHHHC-----C
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF-SAEIHELVRLC-----P 300 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~-~~~i~~i~~~~-----~ 300 (586)
+..++|+.........+..+++|+|+||++|..++.......+.++++|||||||++.+.+. ...+..++... .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 99999998776666666667899999999999999876433688999999999999998753 33333333332 2
Q ss_pred CCCcEEEEeecCchh-----------HHHHHHHhcCCCeEEeeCC------CCCCCCCceEEEEEEec------------
Q 007879 301 KRRQTMLFSATLTED-----------VDELIKLSLTKPLRLSADP------SAKRPSTLTEEVVRIRR------------ 351 (586)
Q Consensus 301 ~~~q~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------------ 351 (586)
...|+++||||+... +..+. ..+.......... .....+.. ....+..
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLC-AALDASVIATVRDNVAELEQVVYKPQK--ISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHTTCSEEECCCSCHHHHHTTCCCCCE--EEEECCCCSCCHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHH-HhcCCeeeeccccCHHHHHhhcCCCce--EEEEecCcccChHHHHHHH
Confidence 457899999999542 11111 1222111111000 00000000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 007879 352 -------------------------------------------------------------------------------- 351 (586)
Q Consensus 352 -------------------------------------------------------------------------------- 351 (586)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred -----------------------------------------------chhhhHHHHHHHHhh----ccCCceEEEEeccH
Q 007879 352 -----------------------------------------------MREVNQEAVLLSLCS----KTFTSKVIIFSGTK 380 (586)
Q Consensus 352 -----------------------------------------------~~~~~~~~~l~~~~~----~~~~~~~lIF~~s~ 380 (586)
.....+...+..++. ...+.++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 000112223333332 23568999999999
Q ss_pred HHHHHHHHHHhhcC------------CceEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCcccccCCCCCccEEEEeCC
Q 007879 381 QAAHRLKILFGLAA------------LKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYAC 447 (586)
Q Consensus 381 ~~~~~l~~~l~~~~------------~~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~~ 447 (586)
..++.+..+|...+ .....+||+|++.+|..+++.|++ |..+|||||+++++|||+|+|++||+||+
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999998763 344555669999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHH
Q 007879 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (586)
Q Consensus 448 p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i 485 (586)
|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 480 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 480 VGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999 998 89999999998876555444
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-45 Score=414.13 Aligned_cols=337 Identities=17% Similarity=0.188 Sum_probs=209.3
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.+|+..|+|+|.++++.++.|+++|+++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+++.+..++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999999998876532 2245799999999999999999999988
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHH-HHHHHHH--
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE-IHELVRL-- 298 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~-i~~i~~~-- 298 (586)
..++++..++|+.........+..+++|+|+||++|.+++.......+.++++|||||||++.+.+.... +..+...
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 7899999999998777666667778999999999999999875333688999999999999987653333 3233332
Q ss_pred --CCCCCcEEEEeecCch-----------hHHHHHHHh------------------cCCCeEEeeCCCCCCCCCce----
Q 007879 299 --CPKRRQTMLFSATLTE-----------DVDELIKLS------------------LTKPLRLSADPSAKRPSTLT---- 343 (586)
Q Consensus 299 --~~~~~q~i~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---- 343 (586)
....+|+++||||+.. .+..+.... +..|...........+..+.
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 1456899999999952 222222111 11111110000000000000
Q ss_pred ----------EE------EEEE-----ec------c--------------------------------------------
Q 007879 344 ----------EE------VVRI-----RR------M-------------------------------------------- 352 (586)
Q Consensus 344 ----------~~------~~~~-----~~------~-------------------------------------------- 352 (586)
.. ...+ .. .
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 0000 00 0
Q ss_pred ------------------------------------------------hhhhHHHHHHHHhh----ccCCceEEEEeccH
Q 007879 353 ------------------------------------------------REVNQEAVLLSLCS----KTFTSKVIIFSGTK 380 (586)
Q Consensus 353 ------------------------------------------------~~~~~~~~l~~~~~----~~~~~~~lIF~~s~ 380 (586)
....+...+..++. ...+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 00112222333332 24568999999999
Q ss_pred HHHHHHHHHHhhc------------CCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCcccccCCCCCccEEEEeCC
Q 007879 381 QAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYAC 447 (586)
Q Consensus 381 ~~~~~l~~~l~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~~ 447 (586)
..++.+..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999763 5566778899999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 448 p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
|+|+..|+||+|| ||. ++|.|++|++..+...
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999 998 7999999998876543
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.2e-45 Score=403.96 Aligned_cols=336 Identities=21% Similarity=0.269 Sum_probs=262.2
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
..+|.+++|++.+.+.+..+||..|+|+|.++++. +..+++++++||||||||++|.++++..+... +.+++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~il~i 81 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----GGKAIYV 81 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CSEEEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----CCeEEEE
Confidence 35699999999999999999999999999999999 78899999999999999999999999887643 2479999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+|+++||.|+++.++.+.. .+++++..+|+....... ...++|+|+||++|...+... ...+.++++|||||||+
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHR-PEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHC-CGGGGGEEEEEECSGGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCC-hhHhhccCEEEEechhh
Confidence 9999999999999865543 488999999986554321 236899999999999988874 33478999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEE-----------EEec
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----------RIRR 351 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 351 (586)
+.++++...+..++..++ ..|+|+||||+++ ...+.. ++..+. +.. ..++..+...+. .+..
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~---~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VAT---NWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EEC---CCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCC---CCCCCCceEEEEecCCcccceeeecCc
Confidence 998888888888776665 7899999999975 333333 333221 111 112222222111 1110
Q ss_pred -----ch-hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC-------------------------------
Q 007879 352 -----MR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA------------------------------- 394 (586)
Q Consensus 352 -----~~-~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~------------------------------- 394 (586)
.. .......+...+. .++++||||+++..++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 307 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELL 307 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHH
Confidence 00 1122233333332 46899999999999999999887532
Q ss_pred -----CceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE----eC-------CCCChhHHHHHh
Q 007879 395 -----LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-------CPRDLTSYVHRV 458 (586)
Q Consensus 395 -----~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~-------~p~s~~~y~Qr~ 458 (586)
..+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.+..+|.||+
T Consensus 308 ~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 308 KSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387 (715)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH
T ss_pred HHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh
Confidence 35899999999999999999999999999999999999999999999999 99 899999999999
Q ss_pred hhcccCC--CcceEEEEeccCc
Q 007879 459 GRTARAG--REGYAVTFVTDND 478 (586)
Q Consensus 459 GR~gR~g--~~g~~~~l~~~~d 478 (586)
|||||.| .+|.|+++++..+
T Consensus 388 GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 388 GRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTBCCTTTCSCEEEEEECSCGG
T ss_pred hhcCCCCCCCCceEEEEeCCch
Confidence 9999988 4799999998766
No 27
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.1e-45 Score=408.03 Aligned_cols=335 Identities=21% Similarity=0.267 Sum_probs=267.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
+|.+++|++.+.+.+..+||..|+|+|.++++. +..++++++++|||||||++|.+|++..+... +.+++|++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcC
Confidence 588999999999999999999999999999998 88899999999999999999999999887743 247999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
+++||.|+++.+..+... +++++.++|+...... ....++|+|+||++|...+... ...+.++++|||||||.+.
T Consensus 77 ~raLa~q~~~~~~~l~~~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SGGGHHHHHHHTGGGGGG-TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGG
T ss_pred cHHHHHHHHHHHHHHHhc-CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccC
Confidence 999999999999766543 8899999997655432 2346899999999999888774 3447899999999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEE-----EEecc---hhhh
Q 007879 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM---REVN 356 (586)
Q Consensus 285 ~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~ 356 (586)
++++...+..++..++...|+|+||||+++ ...+. .++..+. +. ...++..+...+. .+... ....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~---~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAEL-IV---SDWRPVKLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEEE-EE---CCCCSSEEEEEEEETTEEEETTSCEEECSS
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCcc-cC---CCCCCCcceEEEEeCCeeeccccchhhhhH
Confidence 988888888888877778999999999975 33333 3333221 11 1112222222111 11100 0112
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc---------------------------------CCceEEecCC
Q 007879 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------------------------------ALKAAELHGN 403 (586)
Q Consensus 357 ~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~---------------------------------~~~~~~l~~~ 403 (586)
....+...+. .++++||||+++..++.++..|... ...+..+||+
T Consensus 226 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 226 WEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp TTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 2233333333 3689999999999999999888642 1248999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE----eC----CCCChhHHHHHhhhcccCC--CcceEEEE
Q 007879 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA----CPRDLTSYVHRVGRTARAG--REGYAVTF 473 (586)
Q Consensus 404 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~----~p~s~~~y~Qr~GR~gR~g--~~g~~~~l 473 (586)
+++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.++..|.||+|||||.| ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999998 76 6899999999999999988 57999999
Q ss_pred eccCc
Q 007879 474 VTDND 478 (586)
Q Consensus 474 ~~~~d 478 (586)
++..+
T Consensus 384 ~~~~~ 388 (720)
T 2zj8_A 384 STSDD 388 (720)
T ss_dssp CSSSC
T ss_pred ecCcc
Confidence 99887
No 28
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.7e-43 Score=377.90 Aligned_cols=327 Identities=20% Similarity=0.233 Sum_probs=253.8
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.+|+ +|+++|..++|.++.|+ |+.++||+|||++|.+|++...+.+ ..|+||+||++||.|.++++..++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g------~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG------NGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT------SCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC------CCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4788 89999999999999998 9999999999999999997655432 2599999999999999999999999
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcC-----CcCccCceEEEEeCccccc-C---------
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-E--------- 285 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~l~~~~~lViDEah~l~-~--------- 285 (586)
+.|+++++++|+.+...+.. ..++||+|+||++| +++|+... .+.++.+.++||||||+|+ +
T Consensus 178 ~lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 99999999999988654443 33689999999999 88887653 3567889999999999998 3
Q ss_pred ------CCcHHHHHHHHHHCC---------CCCcEE-----------------EEeecCch---hHHHHHHH--hcCCC-
Q 007879 286 ------LGFSAEIHELVRLCP---------KRRQTM-----------------LFSATLTE---DVDELIKL--SLTKP- 327 (586)
Q Consensus 286 ------~~~~~~i~~i~~~~~---------~~~q~i-----------------~~SAT~~~---~~~~~~~~--~~~~~- 327 (586)
.+|...+..++..++ +.+|++ ++|||.+. .+...+.. .+...
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 247788999999998 678888 89999864 33322211 12110
Q ss_pred -------eEEeeCC-----------------------------CCCCCCCceE---------------------------
Q 007879 328 -------LRLSADP-----------------------------SAKRPSTLTE--------------------------- 344 (586)
Q Consensus 328 -------~~~~~~~-----------------------------~~~~~~~~~~--------------------------- 344 (586)
..+.++. .......+.+
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 0000000 0000000000
Q ss_pred ---EEEEEec--------------chhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCC
Q 007879 345 ---EVVRIRR--------------MREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (586)
Q Consensus 345 ---~~~~~~~--------------~~~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~ 405 (586)
.++.++. .....+...+...+.. ..+.++||||+|+..++.|+..|...|+++..|||.+.
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 0011110 1233455555555532 34678999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCcccccCCCCCc----------------------------------------------
Q 007879 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV---------------------------------------------- 439 (586)
Q Consensus 406 ~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v---------------------------------------------- 439 (586)
+.++..+...|+.| .|+|||++++||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 78877777888877 699999999999999875
Q ss_pred ------cEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 440 ------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 440 ------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
.+||+|+.|.|...|.||+||+||+|.+|.+++|++..|...
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999999887533
No 29
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.4e-44 Score=385.95 Aligned_cols=324 Identities=18% Similarity=0.182 Sum_probs=227.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. +|+++|..++|.++.|+ |+.++||+|||++|++|++...+. +.+++||+||++||.|+++++..++.+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~------g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT------SSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 565 79999999999999998 999999999999999999866543 235999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcC-----CcCccCceEEEEeCccccc-CC---------
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-EL--------- 286 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~l~~~~~lViDEah~l~-~~--------- 286 (586)
.++++++++||.+...+ .+..+++|+|+||++| +++|+... .+.++.+.++||||||+|+ +.
T Consensus 142 lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 99999999999886533 3344689999999999 89888653 2457899999999999998 43
Q ss_pred ------CcHHHHHHHHHHCCC--------------------CCcEE------------------------EEeecCch--
Q 007879 287 ------GFSAEIHELVRLCPK--------------------RRQTM------------------------LFSATLTE-- 314 (586)
Q Consensus 287 ------~~~~~i~~i~~~~~~--------------------~~q~i------------------------~~SAT~~~-- 314 (586)
+|...+..++..+++ .+|++ ++|||.+.
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~ 299 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLM 299 (853)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHH
Confidence 355677777777764 45654 88999753
Q ss_pred -hHHHHHH--HhcC---------------------------------CC----eEEeeCCCCCCCCCceE----------
Q 007879 315 -DVDELIK--LSLT---------------------------------KP----LRLSADPSAKRPSTLTE---------- 344 (586)
Q Consensus 315 -~~~~~~~--~~~~---------------------------------~~----~~~~~~~~~~~~~~~~~---------- 344 (586)
.+...+. ..+. .+ ..+.+.........+.+
T Consensus 300 ~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl 379 (853)
T 2fsf_A 300 HHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKL 379 (853)
T ss_dssp ---------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhh
Confidence 2211110 0000 00 00000000000000010
Q ss_pred --------------------EEEEEe--------------cchhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHH
Q 007879 345 --------------------EVVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKI 388 (586)
Q Consensus 345 --------------------~~~~~~--------------~~~~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~ 388 (586)
.++.++ ......+...+...+.. ..+.++||||+|+..++.|+.
T Consensus 380 ~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~ 459 (853)
T 2fsf_A 380 AGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSN 459 (853)
T ss_dssp EEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred hcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 000000 01234455666665532 356789999999999999999
Q ss_pred HHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCc-----------------------------
Q 007879 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV----------------------------- 439 (586)
Q Consensus 389 ~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v----------------------------- 439 (586)
.|...|+++..|||.+.+.++..+...|+.| .|+|||++|+||+||+..
T Consensus 460 ~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 460 ELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 9999999999999999888888888888888 699999999999999873
Q ss_pred --------cEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 440 --------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 440 --------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
.+||+|+.|.|...|.||+||+||+|.+|.+++|++..|.
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999998773
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.1e-45 Score=404.54 Aligned_cols=335 Identities=22% Similarity=0.288 Sum_probs=261.0
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 126 SFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 126 ~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
+|.+++ |++.+.+.+..+||..|+|+|.++++.++.|+++++++|||||||++|.++++..+.. +++++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEe
Confidence 477888 9999999999999999999999999999999999999999999999999999988763 23699999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
|+++||.|+++.++.+.. .+++++.++|+...... ....++|+|+||++|...+.+. ...+.++++|||||||++
T Consensus 76 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp SSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEeeeeec
Confidence 999999999999865543 48899999998654332 2246899999999999988874 334789999999999999
Q ss_pred cCCCcHHHHHHHHHHC---CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEE-----EEecc---
Q 007879 284 LELGFSAEIHELVRLC---PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM--- 352 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~---~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--- 352 (586)
.++++...+..++..+ .+..|+|+||||+++ ...+.. ++..+. +.. ..++..+...+. .+...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~---~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVS---DWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EEC---CCCSSCEEEEEECSSEEEEEETTEE
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccC---CCCCccceEEEeeCCeeeccCcchh
Confidence 9888777766665444 578999999999985 344443 444322 111 112222222111 11110
Q ss_pred --hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc------------------------------CCceEEe
Q 007879 353 --REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------ALKAAEL 400 (586)
Q Consensus 353 --~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~------------------------------~~~~~~l 400 (586)
........+...+. .++++||||+++..++.++..|... +..+..+
T Consensus 225 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 225 TSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp EEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred hhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEe
Confidence 00112333333333 4689999999999999999888642 2468899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE----eC---CCCChhHHHHHhhhcccCC--CcceEE
Q 007879 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA---CPRDLTSYVHRVGRTARAG--REGYAV 471 (586)
Q Consensus 401 ~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~---~p~s~~~y~Qr~GR~gR~g--~~g~~~ 471 (586)
||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| .+|.|+
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 382 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAI 382 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999998 66 7899999999999999988 579999
Q ss_pred EEeccCcH
Q 007879 472 TFVTDNDR 479 (586)
Q Consensus 472 ~l~~~~d~ 479 (586)
++++..+.
T Consensus 383 ~l~~~~~~ 390 (702)
T 2p6r_A 383 IIVGKRDR 390 (702)
T ss_dssp EECCGGGH
T ss_pred EEecCccH
Confidence 99998773
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2e-45 Score=419.17 Aligned_cols=342 Identities=23% Similarity=0.317 Sum_probs=260.8
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 141 ~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
..+||. | ++|.++++.++.|+|++++||||||||+ |++|++..+... ++++|||+||++||.|+++.+..++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-----~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-----GKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-----SCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-----CCeEEEEeccHHHHHHHHHHHHHHH
Confidence 348999 9 9999999999999999999999999998 889999887653 3479999999999999999999999
Q ss_pred hcCCc----eEEEEeCCCChHHH---HHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHH
Q 007879 221 QFTDI----RCCLVVGGLSTKMQ---ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 293 (586)
Q Consensus 221 ~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~ 293 (586)
...++ +++.++|+.+...+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+++++ ...+.
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~~--~~~~~ 195 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKA--SKNVD 195 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHTS--THHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhhc--cccHH
Confidence 88888 89999999887663 344455 99999999999987654 568999999999999985 45666
Q ss_pred HHHHHC-----------CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHH
Q 007879 294 ELVRLC-----------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (586)
Q Consensus 294 ~i~~~~-----------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (586)
.++..+ +..+|++++|||+++. ..+...++..+..+.+.........+.+.++. ..+...+.
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~------~~k~~~L~ 268 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN------DESISTLS 268 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES------CCCTTTTH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec------hhHHHHHH
Confidence 666655 3568899999999887 43322222222223222222233344444431 22233344
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEe----cCcccccCCCCC
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA----TDVAARGLDIIG 438 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLva----T~~~~~Gldi~~ 438 (586)
.++... ++++||||+++..++.++..|... +++..+||++. .+++.|++|+.+|||| |+++++|||+|+
T Consensus 269 ~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 269 SILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 455443 578999999999999999999988 99999999983 7789999999999999 999999999999
Q ss_pred c-cEEEEeCCC---------------------------------------------------------------------
Q 007879 439 V-QTVINYACP--------------------------------------------------------------------- 448 (586)
Q Consensus 439 v-~~VI~~~~p--------------------------------------------------------------------- 448 (586)
| ++||+||+|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 6 999999999
Q ss_pred --CChhHHHHHhhhcccCCCcc--eEEEEeccCcHHHHHHHHHHhcC-ccccccchhhhHHHHHHHHHH
Q 007879 449 --RDLTSYVHRVGRTARAGREG--YAVTFVTDNDRSLLKAIAKRAGS-KLKSRIVAEQSITKWSKIIEQ 512 (586)
Q Consensus 449 --~s~~~y~Qr~GR~gR~g~~g--~~~~l~~~~d~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 512 (586)
.+..+|+||+|||||.|..| .+++++...+...++.+.+.++. .+....+....+..+.+.+++
T Consensus 422 ~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~i~~ 490 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRELDE 490 (1054)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHHHHH
T ss_pred ecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHhhcc
Confidence 78999999999999987665 48888888888888888887664 222233333334444443333
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-44 Score=409.08 Aligned_cols=338 Identities=17% Similarity=0.188 Sum_probs=208.8
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 141 ~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
.-.|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+++.+..++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3446788999999999999999999999999999999999999888765432 124579999999999999999999998
Q ss_pred hcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcH-HHHHHHHHH-
Q 007879 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS-AEIHELVRL- 298 (586)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~-~~i~~i~~~- 298 (586)
...++++..++|+.....+...+..+++|+|+||++|.+++.......+.++++|||||||++.+.+.. ..+..+...
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 888999999999987665555555678999999999999998754336889999999999999877533 333333332
Q ss_pred ---CCCCCcEEEEeecCch-----------hHHHHHHH------------------hcCCCeEEeeCCCCCCCCCce---
Q 007879 299 ---CPKRRQTMLFSATLTE-----------DVDELIKL------------------SLTKPLRLSADPSAKRPSTLT--- 343 (586)
Q Consensus 299 ---~~~~~q~i~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--- 343 (586)
....+|+++||||+.. .+..+... ++..|................
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 1456899999999952 12221111 112221111100000000000
Q ss_pred ---------------------EE-EEEEec------c-------------------------------------------
Q 007879 344 ---------------------EE-VVRIRR------M------------------------------------------- 352 (586)
Q Consensus 344 ---------------------~~-~~~~~~------~------------------------------------------- 352 (586)
.. ...+.. .
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 000000 0
Q ss_pred -------------------------------------------------hhhhHHHHHHHHhhc----cCCceEEEEecc
Q 007879 353 -------------------------------------------------REVNQEAVLLSLCSK----TFTSKVIIFSGT 379 (586)
Q Consensus 353 -------------------------------------------------~~~~~~~~l~~~~~~----~~~~~~lIF~~s 379 (586)
....+...+..++.. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 001112222233322 446899999999
Q ss_pred HHHHHHHHHHHhhc------------CCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCcccccCCCCCccEEEEeC
Q 007879 380 KQAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYA 446 (586)
Q Consensus 380 ~~~~~~l~~~l~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLvaT~~~~~Gldi~~v~~VI~~~ 446 (586)
+..++.|..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999876 5556677889999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH
Q 007879 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (586)
Q Consensus 447 ~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~ 481 (586)
+|+|+..|+||+|| ||. +.|.+++|++..+...
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999 998 6899999998876543
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-43 Score=398.36 Aligned_cols=325 Identities=19% Similarity=0.241 Sum_probs=258.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.++|. |+++|.++++.++.|+++++++|||||||++|.++++..+.. +.++||++||++|+.|+++.+..+..
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~------g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN------KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc------CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 34665 999999999999999999999999999999999988877642 34799999999999999999998754
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCC
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~ 301 (586)
.+++++|+.... ..++|+|+||++|.+++... ...+.++++|||||||++.++++...+..++..++.
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 678888876542 35799999999999988764 456889999999999999999999999999999999
Q ss_pred CCcEEEEeecCchhH--HHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEe---------cch-----------------
Q 007879 302 RRQTMLFSATLTEDV--DELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMR----------------- 353 (586)
Q Consensus 302 ~~q~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----------------- 353 (586)
..|+|+||||+++.. ..++......+..+..... ++..+.+.+.... ...
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 999999999998643 2444434455554443322 2333333332200 000
Q ss_pred ------------------h--------hhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCC------------
Q 007879 354 ------------------E--------VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAAL------------ 395 (586)
Q Consensus 354 ------------------~--------~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~------------ 395 (586)
. ......+...+......++||||+++..|+.++..|...++
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 380 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 380 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 0 11112233333444456899999999999999999876443
Q ss_pred ---------------------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE----
Q 007879 396 ---------------------------KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN---- 444 (586)
Q Consensus 396 ---------------------------~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~---- 444 (586)
.++.+||+|++.+|..++..|++|.++|||||+++++|||+|++++||+
T Consensus 381 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~k 460 (1010)
T 2xgj_A 381 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 460 (1010)
T ss_dssp HHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEE
T ss_pred HHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcc
Confidence 2788999999999999999999999999999999999999999999999
Q ss_pred eCC----CCChhHHHHHhhhcccCCC--cceEEEEeccC-cHHHHHHHHH
Q 007879 445 YAC----PRDLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIAK 487 (586)
Q Consensus 445 ~~~----p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~-d~~~~~~i~~ 487 (586)
||. |.++..|+||+|||||.|. .|.|++++++. +...+..+..
T Consensus 461 fd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 461 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp ECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred cCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 999 8999999999999999996 59999999875 5666666543
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.8e-43 Score=371.55 Aligned_cols=324 Identities=21% Similarity=0.262 Sum_probs=246.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+... +.++|||+|+++|+.||.+.+.++....+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY-----GGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS-----CSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC-----CCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 5999999999999999 999999999999999999988876522 3369999999999999999999886555668
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEE
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i 306 (586)
+..++|+........ ....++|+|+||+.|...+... .+.+.++++||+||||++.+......+...+....+..+++
T Consensus 83 v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 83 IVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred eEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 899999887665433 3345799999999999988764 46688999999999999987655555555555556788999
Q ss_pred EEeecCchh---HHHHHHHhcCCCeEEeeCCCCCCC---CCceEEEEEEe--cc--------------------------
Q 007879 307 LFSATLTED---VDELIKLSLTKPLRLSADPSAKRP---STLTEEVVRIR--RM-------------------------- 352 (586)
Q Consensus 307 ~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~-------------------------- 352 (586)
+||||+... +..++.........+......... ........... ..
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999744 333333322221111110000000 00000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 007879 353 -------------------------------------------------------------------------------- 352 (586)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (586)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred -------------------hhhhHHHHHHHHhhc----cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecC-------
Q 007879 353 -------------------REVNQEAVLLSLCSK----TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG------- 402 (586)
Q Consensus 353 -------------------~~~~~~~~l~~~~~~----~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~------- 402 (586)
....+...+..++.. ..+.++||||+++..++.+...|...++.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 011122333334433 46789999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 403 -NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 403 -~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
+++..+|..+++.|++|..+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+ |.++.|+++.+.
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 999999998764
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.1e-42 Score=388.29 Aligned_cols=326 Identities=17% Similarity=0.205 Sum_probs=251.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
++|. |+++|.++++.++.|++++++||||||||++|++++...+.. ++++||++|+++|+.|+++.+..+.
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~------g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN------MTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 4564 899999999999999999999999999999998888776532 3479999999999999999998743
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~ 302 (586)
.++.++.++|+... ...++|+|+||++|.+++... ...+.++++|||||||++.++++...+..++..++..
T Consensus 107 ~~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 107 DDVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp --CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CCCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 37888999998653 345799999999999988765 3457899999999999999999999999999999999
Q ss_pred CcEEEEeecCchhH--HHHHHHhcCCCeEEeeCCCCCCCCCceEEEEE-------Eec----------------------
Q 007879 303 RQTMLFSATLTEDV--DELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-------IRR---------------------- 351 (586)
Q Consensus 303 ~q~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------------------- 351 (586)
.|+|+||||+++.. ..++......++.+... ..++..+.+.+.. +..
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~--~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVIST--PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTCCEEEEEC--SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred CCEEEEcCCCCChHHHHHHHhcccCCceEEEec--CCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 99999999997543 22232222233332221 1122222222111 000
Q ss_pred -------------------------------------------------------------chhhhHHHHHHHHhhccCC
Q 007879 352 -------------------------------------------------------------MREVNQEAVLLSLCSKTFT 370 (586)
Q Consensus 352 -------------------------------------------------------------~~~~~~~~~l~~~~~~~~~ 370 (586)
.........+...+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 0011123345555555566
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCC---------------------------------------ceEEecCCCCHHHHHH
Q 007879 371 SKVIIFSGTKQAAHRLKILFGLAAL---------------------------------------KAAELHGNLTQAQRLE 411 (586)
Q Consensus 371 ~~~lIF~~s~~~~~~l~~~l~~~~~---------------------------------------~~~~l~~~~~~~~r~~ 411 (586)
.++||||+++..|+.++..|...++ .+..+||+|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 8999999999999999999977655 5799999999999999
Q ss_pred HHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCC---------ChhHHHHHhhhcccCC--CcceEEEEec--cCc
Q 007879 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR---------DLTSYVHRVGRTARAG--REGYAVTFVT--DND 478 (586)
Q Consensus 412 ~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~---------s~~~y~Qr~GR~gR~g--~~g~~~~l~~--~~d 478 (586)
++..|++|.++|||||+++++|||+|+ ..||+++.|. ++..|+||+|||||.| ..|.|++++. ..+
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~ 495 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLS 495 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcch
Confidence 999999999999999999999999999 5566555555 9999999999999988 5688888873 345
Q ss_pred HHHHHHHHHH
Q 007879 479 RSLLKAIAKR 488 (586)
Q Consensus 479 ~~~~~~i~~~ 488 (586)
...++.+...
T Consensus 496 ~~~~~~~i~~ 505 (997)
T 4a4z_A 496 IATFKEVTMG 505 (997)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 6666666543
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.9e-44 Score=398.30 Aligned_cols=325 Identities=22% Similarity=0.247 Sum_probs=223.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH-HHHHHHHhhcCCc
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIEKIAQFTDI 225 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~-~~~~~~l~~~~~~ 225 (586)
.|+|+|.++++.++.|+++|+++|||+|||++|++|++..+........++++|||+|+++|+.|+ .+.+..++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 599999999999999999999999999999999999998876543222234799999999999999 9999998654 48
Q ss_pred eEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHh-----cCCcCccCceEEEEeCcccccCCC-cHHHHHHHHHH-
Q 007879 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN-----SMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRL- 298 (586)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~-----~~~~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~- 298 (586)
++..++|+.........+...++|+|+||++|.+.+.. ...+.+..+++|||||||++...+ +...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 89999998776655555667799999999999988742 224568899999999999986533 22222222211
Q ss_pred ---C---------CCCCcEEEEeecCchh-----------HHHHHHHhcCCCeEEeeCCCC----CCCCCceEEEEEEec
Q 007879 299 ---C---------PKRRQTMLFSATLTED-----------VDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRR 351 (586)
Q Consensus 299 ---~---------~~~~q~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 351 (586)
. .+.+++|+||||+... +..+........+........ ..... ...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p-~~~~~~~~~ 244 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP-CKKFAIADA 244 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC-EEEEEEEC-
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC-ceEEEEccc
Confidence 1 1567899999999862 222222211100000000000 00000 000000000
Q ss_pred ch------------------------------------------------------------------------------
Q 007879 352 MR------------------------------------------------------------------------------ 353 (586)
Q Consensus 352 ~~------------------------------------------------------------------------------ 353 (586)
..
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------------------------------------hhhH----HHHHHHHhhccC-CceEE
Q 007879 354 ------------------------------------------------------EVNQ----EAVLLSLCSKTF-TSKVI 374 (586)
Q Consensus 354 ------------------------------------------------------~~~~----~~~l~~~~~~~~-~~~~l 374 (586)
...+ ...+...+.... ++++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 0000 001111122223 68999
Q ss_pred EEeccHHHHHHHHHHHhhc------CCceEEecCC--------CCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCcc
Q 007879 375 IFSGTKQAAHRLKILFGLA------ALKAAELHGN--------LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (586)
Q Consensus 375 IF~~s~~~~~~l~~~l~~~------~~~~~~l~~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~ 440 (586)
|||+++..++.++.+|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|+|+
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999887 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHHhhhcccCCCcceEEEEecc
Q 007879 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD 476 (586)
Q Consensus 441 ~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~ 476 (586)
+||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 9999999999999999999976644 44444443
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.9e-42 Score=374.51 Aligned_cols=324 Identities=20% Similarity=0.213 Sum_probs=239.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH
Q 007879 134 RPLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (586)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~Q~~~i~~il~g------~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~ 207 (586)
+.+.+.+..++| .||++|.++++.++.+ .+++++|+||||||++|++|++..+..+ .+++|++||++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g------~qvlvlaPtr~ 428 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG------FQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT------SCEEEECSCHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC------CeEEEEeCcHH
Confidence 345555678999 7999999999999875 5899999999999999999999887543 36999999999
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH---Hhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 208 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
||.|+++.+.++....++++..++|+.+...... .+. +.++|+|+||+.|.. .+.+.++++|||||+|++
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchh
Confidence 9999999999998888999999999988765433 233 358999999987754 456789999999999996
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHH
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 363 (586)
... . ...+......+++++||||+.+...............+...+.. . ..+...+. . .......+..
T Consensus 503 g~~---q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~-r-~~i~~~~~--~---~~~~~~l~~~ 570 (780)
T 1gm5_A 503 GVK---Q--REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG-R-KEVQTMLV--P---MDRVNEVYEF 570 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS-C-CCCEECCC--C---SSTHHHHHHH
T ss_pred hHH---H--HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC-C-cceEEEEe--c---cchHHHHHHH
Confidence 321 1 11112223468999999998876654433211111111111111 1 11111111 1 1111112222
Q ss_pred Hhh-ccCCceEEEEeccH--------HHHHHHHHHHhh---cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccc
Q 007879 364 LCS-KTFTSKVIIFSGTK--------QAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (586)
Q Consensus 364 ~~~-~~~~~~~lIF~~s~--------~~~~~l~~~l~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 431 (586)
+.. ...+.+++|||++. ..+..++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 221 23467899999965 457788888887 478999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCCCC-ChhHHHHHhhhcccCCCcceEEEEeccCcHHHH
Q 007879 432 RGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (586)
Q Consensus 432 ~Gldi~~v~~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~ 482 (586)
+|+|+|++++||+++.|. +...|.||+||+||.|++|.|++++++.+....
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 999999999999999996 788999999999999999999999985444433
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-40 Score=391.99 Aligned_cols=346 Identities=17% Similarity=0.205 Sum_probs=262.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
|..+..+++...+|..|+|+|.++++.++. +++++++||||||||++|.+|++..+...++ .++||++|+++||.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~----~kavyi~P~raLa~ 986 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE----GRCVYITPMEALAE 986 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT----CCEEEECSCHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC----CEEEEEcChHHHHH
Confidence 556778888888999999999999999976 5689999999999999999999999887543 37999999999999
Q ss_pred HHHHHHHH-HhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC-cCccCceEEEEeCcccccCCCc
Q 007879 211 QVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGF 288 (586)
Q Consensus 211 Q~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~l~~~~~lViDEah~l~~~~~ 288 (586)
|.++.+.. +....+++++.++|+...... ....++|+||||+++..++++... ..+.++++||+||+|.+.+. .
T Consensus 987 q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-r 1062 (1724)
T 4f92_B 987 QVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-N 1062 (1724)
T ss_dssp HHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-T
T ss_pred HHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-C
Confidence 99988865 555578999999998654433 234579999999999777765322 23789999999999988764 3
Q ss_pred HHHHHH-------HHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHH---
Q 007879 289 SAEIHE-------LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE--- 358 (586)
Q Consensus 289 ~~~i~~-------i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 358 (586)
...+.. +....+++.|+|+||||+++ ..++.......+..+.......++..+...+..+.........
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhh
Confidence 333332 23446778999999999975 3444433322222222223344666666665554432222111
Q ss_pred --HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh----------------------------------cCCceEEecC
Q 007879 359 --AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL----------------------------------AALKAAELHG 402 (586)
Q Consensus 359 --~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~----------------------------------~~~~~~~l~~ 402 (586)
.....+.....++++||||+|+..|+.++..|.. ....++.+||
T Consensus 1142 ~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1142 AKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred cchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 1122233445678999999999999888765521 1246899999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE----e------CCCCChhHHHHHhhhcccCCC--cceE
Q 007879 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----Y------ACPRDLTSYVHRVGRTARAGR--EGYA 470 (586)
Q Consensus 403 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~------~~p~s~~~y~Qr~GR~gR~g~--~g~~ 470 (586)
+|++.+|..+.+.|++|.++|||||+++++|+|+|...+||. | ..|.++.+|.||+|||||.|. .|.|
T Consensus 1222 gL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp TSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999999883 2 246789999999999999986 6999
Q ss_pred EEEeccCcHHHHHHHH
Q 007879 471 VTFVTDNDRSLLKAIA 486 (586)
Q Consensus 471 ~~l~~~~d~~~~~~i~ 486 (586)
++++...+...++.+.
T Consensus 1302 vll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEGGGHHHHHHHT
T ss_pred EEEecchHHHHHHHHh
Confidence 9999998887777654
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.5e-40 Score=376.38 Aligned_cols=324 Identities=19% Similarity=0.190 Sum_probs=250.0
Q ss_pred CCCCHHHHHHH-HHcCCCCCcHHHHHHHHHHhc----CC--CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 130 LNLSRPLLRAC-EALGYSKPTPIQAACIPLALT----GR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 130 ~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~il~----g~--~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
++++....+.+ ..++|. +||+|.++++.++. |+ ++|++++||+|||++|+++++..+.. +.+++|+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~------g~~vlvl 658 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN------HKQVAVL 658 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT------TCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh------CCeEEEE
Confidence 45566666555 456776 79999999999987 66 89999999999999998888776532 3479999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH---Hhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
+||++||.|+++.+..+....++++..+++..+...... .+. +.++|+|+||+.|. . .+.+.++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~--~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C--CccccccceEEEe
Confidence 999999999999999877777889999888776654432 233 35899999997653 2 4668899999999
Q ss_pred CcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHH
Q 007879 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (586)
|||++ .......+..++...++++||||+.+.........+.++..+...+. ....+...+... ......
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~---~~~~i~ 802 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREY---DSMVVR 802 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEEC---CHHHHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecC---CHHHHH
Confidence 99994 23344555556678899999999988777666555544333222111 111222222211 111111
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCC
Q 007879 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (586)
Q Consensus 359 ~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi 436 (586)
..+... ...+++++|||+++..++.++..|... ++.+..+||.|++.+|..++..|++|+.+|||||+++++|+|+
T Consensus 803 ~~il~~--l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 803 EAILRE--ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHH--HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHH--HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 122222 224689999999999999999999887 8899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCC-CCChhHHHHHhhhcccCCCcceEEEEeccCc
Q 007879 437 IGVQTVINYAC-PRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (586)
Q Consensus 437 ~~v~~VI~~~~-p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d 478 (586)
|++++||+++. ++++..|.||+||+||.|+.|.|++++.+.+
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999988 5799999999999999999999999987643
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.5e-40 Score=355.63 Aligned_cols=312 Identities=15% Similarity=0.129 Sum_probs=234.3
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.|+++|.++++.++.+++++++++||+|||++|+++++..+... .+++|||+||++|+.|+++.+.++..+.+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-----SSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-----CCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 69999999999999999999999999999999988888776533 2379999999999999999999887777788
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEE
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i 306 (586)
+..++|+.....+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..++...+++
T Consensus 188 v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 8888888765543 456789999999976542 234577899999999999875 45667777787888999
Q ss_pred EEeecCchhHHHHHH-HhcCCCeEEeeCCCC------CCCCCceEEEEEEecc----------hh--------hhHHHHH
Q 007879 307 LFSATLTEDVDELIK-LSLTKPLRLSADPSA------KRPSTLTEEVVRIRRM----------RE--------VNQEAVL 361 (586)
Q Consensus 307 ~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------~~--------~~~~~~l 361 (586)
+||||++........ ..+..+..+...... ..+..+....+..... .. ..+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 999999765422221 111122222221110 0011111111111100 00 0111222
Q ss_pred HHHhhc---cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEec-CcccccCCCC
Q 007879 362 LSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLDII 437 (586)
Q Consensus 362 ~~~~~~---~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldi~ 437 (586)
..++.. ..+.++||||+ ...+..++..|...+..+..+||++++.+|..++..|++|+.+||||| +++++|+|+|
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVK 415 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCC
T ss_pred HHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccc
Confidence 333322 23456677777 888999999999988899999999999999999999999999999999 9999999999
Q ss_pred CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEec
Q 007879 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 438 ~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
++++||++++|+++..|.||+||+||.|+.|.+++++.
T Consensus 416 ~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 416 NLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999998774555544
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.4e-42 Score=370.62 Aligned_cols=313 Identities=15% Similarity=0.148 Sum_probs=232.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHH
Q 007879 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (586)
Q Consensus 130 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La 209 (586)
+++++.+++++... ...++|+|+.+++.++.|+++++++|||||||++|++|++..+... ++++|||+|||+||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-----RLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEcChHHHH
Confidence 55666666655543 4678999888899999999999999999999999999999988763 34799999999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcH
Q 007879 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (586)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~ 289 (586)
.|+++.+. +..+........ .....+..+.++|.+.|...+... ..+.++++|||||||++ +.++.
T Consensus 229 ~Qi~~~l~------~~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 229 AEMEEALR------GLPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHTT------TSCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHhc------CCceeEecccce-----eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHH
Confidence 99988775 333432111100 011223467788999888777663 45789999999999998 66677
Q ss_pred HHHHHHHHHCC-CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhcc
Q 007879 290 AEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368 (586)
Q Consensus 290 ~~i~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (586)
..+..+...++ ..+|+++||||++..+..+.. .++..+...... + ..... .+...+..
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--~-----------~~~~~----~ll~~l~~- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--P-----------ERSWN----TGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--C-----------SSCCS----SSCHHHHH-
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--C-----------HHHHH----HHHHHHHh-
Confidence 77777777665 678999999999876442221 122222221110 0 00000 01111112
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEE------
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV------ 442 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~V------ 442 (586)
..+++||||+++..++.++..|...++.+..+||. +|.++++.|++|+.+|||||+++++|||++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 26799999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred --------------EEeCCCCChhHHHHHhhhcccCCC-cceEEEEec---cCcHHHHHHHHHH
Q 007879 443 --------------INYACPRDLTSYVHRVGRTARAGR-EGYAVTFVT---DNDRSLLKAIAKR 488 (586)
Q Consensus 443 --------------I~~~~p~s~~~y~Qr~GR~gR~g~-~g~~~~l~~---~~d~~~~~~i~~~ 488 (586)
|+|+.|.+..+|+||+||+||.|. +|.|++|++ +.+...+..+.+.
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 788889999999999999999964 899999998 6776666666654
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.7e-40 Score=387.87 Aligned_cols=338 Identities=18% Similarity=0.241 Sum_probs=254.5
Q ss_pred CCCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-----CCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 144 GYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 144 ~~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
||..|+++|.+++|.++. ++|++++||||||||++|.++++..+..... ...+.++||++|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999875 7899999999999999999999999875321 1246689999999999999999999
Q ss_pred HHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC-cCccCceEEEEeCcccccCCCcHHHHHHH-
Q 007879 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGFSAEIHEL- 295 (586)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-~~l~~~~~lViDEah~l~~~~~~~~i~~i- 295 (586)
+.....|++|..++|+.....+ ....++|+||||+++..++++... ..++.+++|||||+|.+.+ .....+..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888889999999998765432 134589999999998665554321 2368899999999998765 344443333
Q ss_pred ------HHHCCCCCcEEEEeecCchhHHHHHHHhcCCC-eEEeeCCCCCCCCCceEEEEEEecchhhhHHHH-----HHH
Q 007879 296 ------VRLCPKRRQTMLFSATLTEDVDELIKLSLTKP-LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV-----LLS 363 (586)
Q Consensus 296 ------~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~ 363 (586)
...++...|+|+||||+++ ..++.......+ ..+.......+|..+.+.++.+........... ...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 2356788999999999974 444443222211 112222334466667776655543322222211 122
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhh-------------------------------------cCCceEEecCCCCH
Q 007879 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGNLTQ 406 (586)
Q Consensus 364 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~-------------------------------------~~~~~~~l~~~~~~ 406 (586)
+.....++++||||+|++.|+.++..|.. ....++.+||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 33344567999999999988888777632 12458899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE----eCC------CCChhHHHHHhhhcccCC--CcceEEEEe
Q 007879 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YAC------PRDLTSYVHRVGRTARAG--REGYAVTFV 474 (586)
Q Consensus 407 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~~~------p~s~~~y~Qr~GR~gR~g--~~g~~~~l~ 474 (586)
.+|..+.+.|++|.++|||||+++++|||+|.+++||. |++ |.++.+|.||+|||||.| ..|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999985 543 468999999999999977 469999999
Q ss_pred ccCcHHHHHHHH
Q 007879 475 TDNDRSLLKAIA 486 (586)
Q Consensus 475 ~~~d~~~~~~i~ 486 (586)
...+......+.
T Consensus 471 ~~~~~~~~~~ll 482 (1724)
T 4f92_B 471 SHGELQYYLSLL 482 (1724)
T ss_dssp ESTTCCHHHHHT
T ss_pred cchhHHHHHHHH
Confidence 888766655554
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.3e-41 Score=351.25 Aligned_cols=287 Identities=16% Similarity=0.190 Sum_probs=215.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCe-EEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 144 GYSKPTPIQAACIPLALTGRDI-CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 144 ~~~~~~~~Q~~~i~~il~g~~~-lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
|+..|+|+|+ ++|.++.++++ ++++|||||||++|++|++..+...+ +++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-----~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR-----LRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT-----CCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC-----CcEEEECCCHHHHHHHHHHhc-----
Confidence 6788999985 79999999887 89999999999999999998876543 469999999999999988774
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHH-HHCCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV-RLCPK 301 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~-~~~~~ 301 (586)
+..+......... ....+..|.++|++.|...+... ..+.++++|||||||++ +.++...+..+. ...++
T Consensus 70 -g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp -TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred -Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 3444332222211 12334579999999998888763 55789999999999987 333232222222 23356
Q ss_pred CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHH
Q 007879 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381 (586)
Q Consensus 302 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~ 381 (586)
.+|+++||||+++.+..+ ....+..+..... .+.. . + .. +...+.. ..+++||||+++.
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~~--~-~--------~~----~~~~l~~-~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIERE--IPER--S-W--------NT----GFDWITD-YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECC--CCSS--C-C--------SS----SCHHHHH-CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCcc--CCch--h-h--------HH----HHHHHHh-CCCCEEEEcCCHH
Confidence 789999999998754322 2222222222110 0000 0 0 00 0111122 3569999999999
Q ss_pred HHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeC---------------
Q 007879 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA--------------- 446 (586)
Q Consensus 382 ~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~--------------- 446 (586)
.++.++..|...++.+..+|+.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+|+
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCChhHHHHHhhhcccCCC-cceEEEEecc
Q 007879 447 -----CPRDLTSYVHRVGRTARAGR-EGYAVTFVTD 476 (586)
Q Consensus 447 -----~p~s~~~y~Qr~GR~gR~g~-~g~~~~l~~~ 476 (586)
.|.+..+|+||+||+||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.2e-39 Score=359.61 Aligned_cols=337 Identities=17% Similarity=0.178 Sum_probs=244.5
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~-g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vli 201 (586)
...+|.++++++.+.+.+...+ ..|++.|+.+++.++. +++++++||||||||+ ++|++........ ..+.+++|
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~-~~g~~ilv 145 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH-LENTQVAC 145 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG-GGTCEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc-CCCceEEe
Confidence 4567999999999999999988 6799999999988876 4679999999999998 4665532211111 12447999
Q ss_pred EcCcHHHHHHHHHHHHHHhh-cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCc
Q 007879 202 LTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (586)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 280 (586)
++|+++|+.|+++.+..... ..+..++....... .....++|+++|||+|.+.+... ..+.++++|||||+
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEa 217 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEA 217 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSG
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCc
Confidence 99999999999876654321 12222222111110 12346799999999999888763 45889999999999
Q ss_pred cc-ccCCCc-HHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecch-hhhH
Q 007879 281 DR-LLELGF-SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQ 357 (586)
Q Consensus 281 h~-l~~~~~-~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (586)
|. .++..+ ...+..+.... +..|+|+||||++.. .+. .++..+..+..... ...+...+....... ....
T Consensus 218 h~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~ 290 (773)
T 2xau_A 218 HERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQRDYLDSA 290 (773)
T ss_dssp GGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCC---CCCEEEECCSSCCSCHHHHH
T ss_pred cccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HHH-HHhcCCCcccccCc---ccceEEEEecCCchhHHHHH
Confidence 95 554332 23344444444 578999999999643 333 34444333433221 122332222211111 0111
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh-----------cCCceEEecCCCCHHHHHHHHHHHh-----cCCC
Q 007879 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-----------AALKAAELHGNLTQAQRLEALELFR-----KQHV 421 (586)
Q Consensus 358 ~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~-----------~~~~~~~l~~~~~~~~r~~~~~~f~-----~g~~ 421 (586)
...+..++....++++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|+ +|..
T Consensus 291 l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~ 370 (773)
T 2xau_A 291 IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370 (773)
T ss_dssp HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce
Confidence 22333444444678999999999999999999874 5788999999999999999999999 9999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCC------------------CCChhHHHHHhhhcccCCCcceEEEEeccCcH
Q 007879 422 DFLIATDVAARGLDIIGVQTVINYAC------------------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (586)
Q Consensus 422 ~vLvaT~~~~~Gldi~~v~~VI~~~~------------------p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~ 479 (586)
+|||||+++++|||||+|++||++++ |.+...|+||+|||||. ++|.|+.|+++.+.
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999887 88999999999999998 79999999987654
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.6e-39 Score=344.16 Aligned_cols=295 Identities=19% Similarity=0.230 Sum_probs=218.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.|+|+|.++++.++.++++++++|||+|||++|++++... +.++|||+|+++|+.||.+.+..+ +++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~ 159 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGGG----CGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHhC----CCc
Confidence 6999999999999999999999999999999998887654 236999999999999999988873 677
Q ss_pred -EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcE
Q 007879 227 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (586)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~ 305 (586)
+..++|+.. ..++|+|+||+.+...+... ..++++|||||||++.+.+|.. ++..+ ...++
T Consensus 160 ~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~ 221 (472)
T 2fwr_A 160 YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFR 221 (472)
T ss_dssp GEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEE
T ss_pred ceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeE
Confidence 888888754 24799999999998766431 2468999999999999887764 44444 46789
Q ss_pred EEEeecCchh-------------------HHHHHHHhcCCCeE--EeeCCCCC------------------------CCC
Q 007879 306 MLFSATLTED-------------------VDELIKLSLTKPLR--LSADPSAK------------------------RPS 340 (586)
Q Consensus 306 i~~SAT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~------------------------~~~ 340 (586)
+++|||+... ...+...++..+.. +....... ...
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999731 22221111111111 00000000 000
Q ss_pred CceEEEEE---Ee---------------cchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecC
Q 007879 341 TLTEEVVR---IR---------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402 (586)
Q Consensus 341 ~~~~~~~~---~~---------------~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~ 402 (586)
.+...+.. .. ......+...+..++....++++||||++...++.++..|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 00000000 00 00112234455666666668899999999999999999984 668999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCc-c--eEEEEeccC
Q 007879 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE-G--YAVTFVTDN 477 (586)
Q Consensus 403 ~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~-g--~~~~l~~~~ 477 (586)
.++..+|..+++.|++|..+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+. + .++.|++..
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999998843 3 344555543
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.2e-40 Score=351.40 Aligned_cols=289 Identities=18% Similarity=0.201 Sum_probs=218.0
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.++++|..+++.+..+++++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+.. +..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------g~~vLVl~PTReLA~Qia~~l~~~~---g~~ 284 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKAH---GID 284 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------TCCEEEEESCHHHHHHHHHHHHHHH---SCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------CCeEEEEcchHHHHHHHHHHHHHHh---CCC
Confidence 4566777777777788999999999999999999888762 2369999999999999988776543 455
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCc--
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ-- 304 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q-- 304 (586)
+...+|+.. ...+++|+|+||++|+ .. ..+.+.++++|||||||. ++.+|...+..+++.++..+|
T Consensus 285 vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 285 PNIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CEEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSE
T ss_pred eeEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCce
Confidence 666777643 4567899999999984 23 356788999999999964 566688888889999988777
Q ss_pred EEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHH
Q 007879 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAH 384 (586)
Q Consensus 305 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~ 384 (586)
+++||||+++.+. ...+........... . +.+.. .... +....++++||||++++.++
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~~~~--~-----i~~~~--~~~~-------l~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALSNTG--E-----IPFYG--KAIP-------IEAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECBSCS--S-----EEETT--EEEC-------GGGSSSSEEEEECSCHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeecccc--h-----hHHHH--hhhh-------hhhccCCcEEEEeCCHHHHH
Confidence 6788999987321 111111111000000 0 00000 0000 12235789999999999999
Q ss_pred HHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEE----------EeC--------
Q 007879 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----------NYA-------- 446 (586)
Q Consensus 385 ~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~~-------- 446 (586)
.++..|...++.+..+||++++.+ |.++..+|||||+++++|||++ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999875 4566679999999999999997 99988 677
Q ss_pred ---CCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH--H--HHHHHHhcC
Q 007879 447 ---CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL--L--KAIAKRAGS 491 (586)
Q Consensus 447 ---~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~--~--~~i~~~~~~ 491 (586)
.|.+...|+||+||+|| |++|. +.|+++.+... + ..+.+..+.
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 89999999999999999 99999 99998876543 3 445444433
No 47
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4.3e-36 Score=313.82 Aligned_cols=331 Identities=18% Similarity=0.198 Sum_probs=243.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|. +|+++|..+...+..|+ |+.+.||+|||+++.+|++...+.+. .|.|++|++.||.|-++++..+..+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~------~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK------GVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS------CEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC------ceEEEeccHHHHHhHHHHHHHHHHH
Confidence 465 59999999999999888 99999999999999999986655432 4999999999999999999999999
Q ss_pred CCceEEEEeCC--------------------------------------------------CChHHHHHHhcCCCcEEEE
Q 007879 223 TDIRCCLVVGG--------------------------------------------------LSTKMQETALRSMPDIVVA 252 (586)
Q Consensus 223 ~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~Ili~ 252 (586)
.|++++++... .+...+...+ .+||+++
T Consensus 143 Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYg 220 (822)
T 3jux_A 143 LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYG 220 (822)
T ss_dssp TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEE
T ss_pred hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEc
Confidence 99999999872 2222233333 3799999
Q ss_pred CcHHH-HHHHHhcCCc-----CccCceEEEEeCccccc-C--------CC----cHH---HHHHHH--------------
Q 007879 253 TPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-E--------LG----FSA---EIHELV-------------- 296 (586)
Q Consensus 253 Tp~~l-~~~l~~~~~~-----~l~~~~~lViDEah~l~-~--------~~----~~~---~i~~i~-------------- 296 (586)
|..-| +++|+.+... -...+.+.||||+|.++ + .| -.. .+..+.
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99888 7788765322 24668899999999854 1 00 000 000000
Q ss_pred ------------------------------------H-------------------------------------------
Q 007879 297 ------------------------------------R------------------------------------------- 297 (586)
Q Consensus 297 ------------------------------------~------------------------------------------- 297 (586)
.
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 0
Q ss_pred ------------------------HCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecch
Q 007879 298 ------------------------LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (586)
Q Consensus 298 ------------------------~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (586)
++....++.+||||+.....++...+....+. .+.........+....+. .
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~---IPtnkp~~R~d~~d~vy~--t 455 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV---IPTHKPMIRKDHDDLVFR--T 455 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE---CCCSSCCCCEECCCEEES--S
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE---ECCCCCcceeecCcEEEe--c
Confidence 00012478999999998888887776443222 222222222222212222 3
Q ss_pred hhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccc
Q 007879 354 EVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (586)
Q Consensus 354 ~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 431 (586)
...+...+...+.. ..+.++||||+|+..++.++..|...|+++..+||+..+.++..+...|+.| .|+|||++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 34555566665543 2467999999999999999999999999999999986555555555566555 6999999999
Q ss_pred ccCCCC--------CccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHH-------HHHHHHHhcC
Q 007879 432 RGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL-------LKAIAKRAGS 491 (586)
Q Consensus 432 ~Gldi~--------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~-------~~~i~~~~~~ 491 (586)
||+||+ +..+||+|++|.++..|+||+|||||+|.+|.+++|++..|... +..+.+.++.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~ 608 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKI 608 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSC
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCC
Confidence 999998 67799999999999999999999999999999999999988433 3445555554
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.4e-40 Score=346.41 Aligned_cols=278 Identities=19% Similarity=0.194 Sum_probs=193.2
Q ss_pred HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChH
Q 007879 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (586)
+++.|+++++++|||||||++|++|++..+...+ +++||++||++||.|+++.+.. +.+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~-----~~~lil~Ptr~La~Q~~~~l~~------~~v~~~~~~~~-- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR-----LRTLVLAPTRVVLSEMKEAFHG------LDVKFHTQAFS-- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-----CCEEEEESSHHHHHHHHHHTTT------SCEEEESSCCC--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC-----CeEEEEcchHHHHHHHHHHHhc------CCeEEecccce--
Confidence 4678999999999999999999999999876543 4699999999999999988773 23332222111
Q ss_pred HHHHHhcCCCcEEEECcHHHH---------HHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC-CCCCcEEE
Q 007879 238 MQETALRSMPDIVVATPGRMI---------DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTML 307 (586)
Q Consensus 238 ~~~~~~~~~~~Ili~Tp~~l~---------~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~i~ 307 (586)
.++||++++ ..+.. ...+.++++|||||||++ +.++...+..+...+ +..+|+++
T Consensus 71 ------------~v~Tp~~l~~~l~~~~l~~~~~~--~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 71 ------------AHGSGREVIDAMCHATLTYRMLE--PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp ------------CCCCSSCCEEEEEHHHHHHHHTS--SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred ------------eccCCccceeeecccchhHhhhC--cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 255655443 22222 244789999999999998 333333333332222 36799999
Q ss_pred EeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHH
Q 007879 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLK 387 (586)
Q Consensus 308 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~ 387 (586)
||||+++.+..+... ..++.... ..+....... .+..+.. .++++||||+++..++.++
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~~---~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQ--------------TDIPSEPWNT---GHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCSS---SCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeEee--------------eccChHHHHH---HHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 999998764322211 01111100 0000000001 1111112 2679999999999999999
Q ss_pred HHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE-------------------eCCC
Q 007879 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------------------YACP 448 (586)
Q Consensus 388 ~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~-------------------~~~p 448 (586)
..|...++.+..+|| .+|..++..|++|+.+|||||+++++|+|+| +++||+ |+.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4688999999999999999999999999999 999986 8999
Q ss_pred CChhHHHHHhhhcccC-CCcceEEEEe---ccCcHHHHHHHHHHh
Q 007879 449 RDLTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKRA 489 (586)
Q Consensus 449 ~s~~~y~Qr~GR~gR~-g~~g~~~~l~---~~~d~~~~~~i~~~~ 489 (586)
.++.+|+||+||+||. |++|.|++|+ ++.+...++.+...+
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 9999999999999997 6899999996 567766677666543
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.8e-39 Score=351.47 Aligned_cols=305 Identities=15% Similarity=0.190 Sum_probs=214.8
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 139 ACEALGYS-----KPTPIQA-----ACIPLAL------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 139 ~l~~~~~~-----~~~~~Q~-----~~i~~il------~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
++..+||. .|+++|+ ++||.++ .|+++|+++|||||||++|++|++..+... ++++|||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----~~~~lil 276 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----RLRTAVL 276 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----TCCEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 34455666 8999999 9999988 899999999999999999999999887653 3479999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+||++||.|+++.+..+ ++ ....+.... ....+.-+-+.+.+.+...+.. ...+.++++|||||||+
T Consensus 277 aPTr~La~Q~~~~l~~~----~i--~~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGL----PV--RYLTPAVQR-----EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHF 343 (673)
T ss_dssp ESSHHHHHHHHHHTTTS----CC--EECCC---C-----CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTC
T ss_pred ccHHHHHHHHHHHHhcC----Ce--eeecccccc-----cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCcc
Confidence 99999999999887743 22 211111000 0011123445555666555544 24678999999999999
Q ss_pred ccCCCcHHHHHHHHHHC-CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHH
Q 007879 283 LLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (586)
+ +..+...+..+...+ +..+|+++||||+++.+..+... ..|+.. .. ..+... .....+
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~-v~-------------~~~~~~---~~~~~l 403 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHD-VS-------------SEIPDR---AWSSGF 403 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EE-------------CCCCSS---CCSSCC
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEE-Ee-------------eecCHH---HHHHHH
Confidence 8 221222333333333 36789999999998664321110 011110 00 000000 000011
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccE
Q 007879 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (586)
Q Consensus 362 ~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~ 441 (586)
..+.. .++++||||+++..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 11222 46799999999999999999999999999999993 789999999999999999999999999999 999
Q ss_pred EEE--------------------eCCCCChhHHHHHhhhcccC-CCcceEEEEe---ccCcHHHHHHHHHH
Q 007879 442 VIN--------------------YACPRDLTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKR 488 (586)
Q Consensus 442 VI~--------------------~~~p~s~~~y~Qr~GR~gR~-g~~g~~~~l~---~~~d~~~~~~i~~~ 488 (586)
||+ |++|.++.+|+||+||+||. |++|.|++|+ ++.+...++.+...
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH
Confidence 998 67899999999999999998 7899999996 56666555555544
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.8e-38 Score=332.60 Aligned_cols=273 Identities=16% Similarity=0.212 Sum_probs=197.1
Q ss_pred HHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCC
Q 007879 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235 (586)
Q Consensus 156 i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~ 235 (586)
...+..|+++++++|||||||++|++|++..+...+ +++||++||++||.|+++.+. +..+....+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-----~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR-----LRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT-----CCEEEEECSHHHHHHHHHHTT------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-----CcEEEECchHHHHHHHHHHhc------CceEeEEecccc
Confidence 344566889999999999999999999999887532 469999999999999988876 333433222211
Q ss_pred hHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc-----cCCCcHHHHHHHHHHCCCCCcEEEEee
Q 007879 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-----LELGFSAEIHELVRLCPKRRQTMLFSA 310 (586)
Q Consensus 236 ~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l-----~~~~~~~~i~~i~~~~~~~~q~i~~SA 310 (586)
.. -..+.-+.++|.+.+...+.. ...+.++++|||||||++ +.+++...+ ..++..|+++|||
T Consensus 84 ~~-----~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~-----~~~~~~~~il~SA 151 (459)
T 2z83_A 84 RE-----HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATK-----VELGEAAAIFMTA 151 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH-----HHTTSCEEEEECS
T ss_pred cC-----CCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHH-----hccCCccEEEEEc
Confidence 10 123346778899988877765 355789999999999984 333332221 1236789999999
Q ss_pred cCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHH
Q 007879 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390 (586)
Q Consensus 311 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l 390 (586)
|++..+..+... ..|+..... . ++....... ..++.. .++++||||+++..++.++..|
T Consensus 152 T~~~~~~~~~~~--~~pi~~~~~-~-------------~~~~~~~~~----~~~l~~-~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHDLQD-E-------------IPDRAWSSG----YEWITE-YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEEEEC-C-------------CCSSCCSSC----CHHHHH-CCSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEEecc-c-------------CCcchhHHH----HHHHHh-cCCCEEEEeCChHHHHHHHHHH
Confidence 998654322110 122221110 0 000000000 111122 2679999999999999999999
Q ss_pred hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEE--------------------eCCCCC
Q 007879 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN--------------------YACPRD 450 (586)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------------------~~~p~s 450 (586)
...++.+..+||. +|..++..|++|+.+|||||+++++|+|+|+ ++||+ |+.|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999994 6788999999999999999999999999999 99999 779999
Q ss_pred hhHHHHHhhhcccCCC-cceEEEEeccC
Q 007879 451 LTSYVHRVGRTARAGR-EGYAVTFVTDN 477 (586)
Q Consensus 451 ~~~y~Qr~GR~gR~g~-~g~~~~l~~~~ 477 (586)
+.+|+||+||+||.|+ +|.+++|++..
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 99999999875
No 51
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.9e-36 Score=290.73 Aligned_cols=213 Identities=33% Similarity=0.511 Sum_probs=194.7
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCC--CCCCCeE
Q 007879 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIR 198 (586)
Q Consensus 121 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~ 198 (586)
+....+|.++++++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+.... ....+++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 34467899999999999999999999999999999999999999999999999999999999999887543 1224567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
+|||+||++|+.|+++.+..+....++.+..++|+.........+..+++|+|+||++|.+++... ...+.++++||+|
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViD 183 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRTTYLVLD 183 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT-SCCCTTCCEEEET
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCCcccccEEEEe
Confidence 999999999999999999999998999999999999988888888888999999999999998765 4678999999999
Q ss_pred CcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCC
Q 007879 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 334 (586)
|||++++++|...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+..
T Consensus 184 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 184 EADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp THHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred CHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999887753
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.6e-37 Score=319.26 Aligned_cols=269 Identities=15% Similarity=0.158 Sum_probs=191.8
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
.|+++++++|||||||++|++|+++.+...+ .+++|++||++||.|+++.+. ++.+.+..++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-----~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR-----LRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT-----CCEEEEESSHHHHHHHHHHTT------TSCEEEC----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC-----CCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----
Confidence 3789999999999999999999997766543 369999999999999887765 4556655554221
Q ss_pred HHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC-CCCCcEEEEeecCchhHHHH
Q 007879 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDEL 319 (586)
Q Consensus 241 ~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~ 319 (586)
.-..+.-+.++|.+.+...+.. ...+.++++|||||||++ ..++......+.... +..+|+++||||+++.+..+
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred -cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1122346778899988776666 455789999999999997 332333333443332 56899999999998743211
Q ss_pred HHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEE
Q 007879 320 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (586)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~ 399 (586)
... ..|+. ... ..+..... ..+..++.. .++++||||+++..++.++..|...++.+..
T Consensus 142 ~~~--~~~i~-~~~-------------~~~~~~~~----~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS--NSPII-DEE-------------TRIPDKAW----NSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC--SSCCE-EEE-------------CCCCSSCC----SSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC--CCcee-ecc-------------ccCCHHHH----HHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 01110 000 00000000 011122222 2568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccE-----------------EEEeCCCCChhHHHHHhhhcc
Q 007879 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT-----------------VINYACPRDLTSYVHRVGRTA 462 (586)
Q Consensus 400 l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~-----------------VI~~~~p~s~~~y~Qr~GR~g 462 (586)
+||. +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9996 577899999999999999999999999999 654 678899999999999999999
Q ss_pred cCCC-cceEEEEe
Q 007879 463 RAGR-EGYAVTFV 474 (586)
Q Consensus 463 R~g~-~g~~~~l~ 474 (586)
|.|. .|.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 45555554
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.1e-36 Score=344.94 Aligned_cols=336 Identities=16% Similarity=0.162 Sum_probs=228.3
Q ss_pred CCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 007879 146 SKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~ 223 (586)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+..+. ..++|||||+ .|+.||.+.+.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~----~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA----AERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS----CCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC----CCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 35899999999998874 47899999999999997665555443322 2269999999 99999999987643
Q ss_pred CceEEEEeCCCChHHHHH--HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcH--HHHHHHHHHC
Q 007879 224 DIRCCLVVGGLSTKMQET--ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLC 299 (586)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~--~~i~~i~~~~ 299 (586)
++++.++.++........ ......+|+|+|++.|.........+....|++|||||||++.+.+.. .....+....
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 666666655432211111 112346999999998864321111233457999999999999865422 2233333333
Q ss_pred CCCCcEEEEeecCch----hHHHHHHHhcCC-----------------------------C-------------------
Q 007879 300 PKRRQTMLFSATLTE----DVDELIKLSLTK-----------------------------P------------------- 327 (586)
Q Consensus 300 ~~~~q~i~~SAT~~~----~~~~~~~~~~~~-----------------------------~------------------- 327 (586)
....+++++||||.+ ++..++...... +
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 455679999999853 111111110000 0
Q ss_pred --------------------------------eEEeeCC-C-CCCC-CCceEEEEEE-----------------------
Q 007879 328 --------------------------------LRLSADP-S-AKRP-STLTEEVVRI----------------------- 349 (586)
Q Consensus 328 --------------------------------~~~~~~~-~-~~~~-~~~~~~~~~~----------------------- 349 (586)
+.+.... . ...+ .......+.+
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDR 463 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHH
Confidence 0000000 0 0000 0000000000
Q ss_pred -------------------ecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh-cCCceEEecCCCCHHHH
Q 007879 350 -------------------RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQR 409 (586)
Q Consensus 350 -------------------~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~-~~~~~~~l~~~~~~~~r 409 (586)
.......+...+..++....+.++||||+++..++.++..|.. .|+.+..+||+|++.+|
T Consensus 464 ~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 464 ARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp THHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred HhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 0111223556677777767788999999999999999999994 69999999999999999
Q ss_pred HHHHHHHhcCC--CcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 410 LEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 410 ~~~~~~f~~g~--~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
..++..|++|+ ++|||||+++++|+|+|++++||+|++|+++..|.||+||+||.|+.|.|++++........+.+.+
T Consensus 544 ~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~ 623 (968)
T 3dmq_A 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVR 623 (968)
T ss_dssp HHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHH
T ss_pred HHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHH
Confidence 99999999998 9999999999999999999999999999999999999999999999987666654433333344444
Q ss_pred Hh
Q 007879 488 RA 489 (586)
Q Consensus 488 ~~ 489 (586)
.+
T Consensus 624 ~~ 625 (968)
T 3dmq_A 624 WY 625 (968)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=285.25 Aligned_cols=207 Identities=44% Similarity=0.768 Sum_probs=191.2
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
...+|.++++++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+..... ++++||+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~---~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ---RLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC---SSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC---CceEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999998876543 4579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+.+.....+.+.++++||+||||+
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 99999999999999999888899999999999888777778889999999999999998875566789999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEee
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 332 (586)
+.+++|...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+
T Consensus 198 l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999988764
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=293.51 Aligned_cols=206 Identities=30% Similarity=0.494 Sum_probs=183.9
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEE
Q 007879 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (586)
Q Consensus 122 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g--~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (586)
....+|.+++|++.++++|..+||..|+++|.+++|.++.| +|+++++|||||||++|++|+++++.... .++++
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~---~~~~~ 165 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQC 165 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCE
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC---CCceE
Confidence 34678999999999999999999999999999999999998 99999999999999999999999876543 35579
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 200 LILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 200 lil~Ptr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
|||+|||+||.|+++.+..++.+. ++.+...+|+...... ...+++|+|+||++|++++.+...+.+.++++||||
T Consensus 166 lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 999999999999999999998764 7888888887654322 245689999999999999977556778999999999
Q ss_pred CcccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeC
Q 007879 279 EADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (586)
Q Consensus 279 Eah~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 333 (586)
|||+|++ .+|...+..+...+++.+|+++||||+++.+..++..++.+|..+.+.
T Consensus 243 Ead~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp THHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999997 789999999999999999999999999999999999999999888764
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2e-35 Score=318.69 Aligned_cols=313 Identities=19% Similarity=0.204 Sum_probs=224.1
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 133 ~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
....++++..++. |.|.......+.|++++++||||||||+ +++..+...+ +.+|++|||+||.|+
T Consensus 130 ~~d~l~~i~dl~~----p~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~------~gl~l~PtR~LA~Qi 195 (677)
T 3rc3_A 130 CKDDLRKISDLRI----PPNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK------SGVYCGPLKLLAHEI 195 (677)
T ss_dssp CHHHHHHHTBCCC----GGGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS------SEEEEESSHHHHHHH
T ss_pred CHHHHHHHhhccC----hhhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC------CeEEEeCHHHHHHHH
Confidence 3344455544333 3344444556789999999999999997 3444444432 259999999999999
Q ss_pred HHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHH
Q 007879 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (586)
Q Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i 292 (586)
++.+..+ ++++..++|+..... ..-....+++++|++.+. ....+++|||||||++++.++...+
T Consensus 196 ~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~ 260 (677)
T 3rc3_A 196 FEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAW 260 (677)
T ss_dssp HHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHH
T ss_pred HHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHH
Confidence 9998874 778888888865410 000123578888864431 2467899999999999999999999
Q ss_pred HHHHHHCC-CCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCc
Q 007879 293 HELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371 (586)
Q Consensus 293 ~~i~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 371 (586)
..++..++ ...+++++|||. +.+..+.... ...+.+... .+...+. +... . + ..+... ..
T Consensus 261 ~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~---~r~~~l~-----~~~~--~-----l-~~l~~~-~~ 321 (677)
T 3rc3_A 261 TRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY---KRLTPIS-----VLDH--A-----L-ESLDNL-RP 321 (677)
T ss_dssp HHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC---CCSSCEE-----ECSS--C-----C-CSGGGC-CT
T ss_pred HHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe---eecchHH-----HHHH--H-----H-HHHHhc-CC
Confidence 88888887 778999999995 3344444332 333333221 1111111 0000 0 0 011111 34
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhc--CCCcEEEecCcccccCCCCCccEEEEeCC--
Q 007879 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYAC-- 447 (586)
Q Consensus 372 ~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~~~-- 447 (586)
+.+|||+++..++.++..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ ++++||++++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccc
Confidence 55899999999999999999999999999999999999999999999 889999999999999999 9999999999
Q ss_pred ------------CCChhHHHHHhhhcccCCCc---ceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 448 ------------PRDLTSYVHRVGRTARAGRE---GYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 448 ------------p~s~~~y~Qr~GR~gR~g~~---g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
|.+...|+||+|||||.|.. |.|+.+ ...+...++.+.......+..
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCCCC
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchhhh
Confidence 88999999999999999864 666555 445656666666654444443
No 57
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7.4e-36 Score=324.43 Aligned_cols=304 Identities=15% Similarity=0.140 Sum_probs=188.8
Q ss_pred CCcHHHHHHHHHHhc----C-CCeEEEcCCCchhHHHhhhhhHHHHhcCC----CCCCCeEEEEEcCcHHHHHHHH-HHH
Q 007879 147 KPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRP----KRIPAIRVLILTPTRELAVQVH-SMI 216 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~----g-~~~lv~~~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~vlil~Ptr~La~Q~~-~~~ 216 (586)
.|+++|.++++.++. | ++++++++||||||+++ ++++..++... ....++++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999886 4 56899999999999985 55665555432 1113457999999999999998 666
Q ss_pred HHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhc---CCcCccCceEEEEeCcccccCCCcHHHHH
Q 007879 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS---MSVDLDDLAVLILDEADRLLELGFSAEIH 293 (586)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~---~~~~l~~~~~lViDEah~l~~~~~~~~i~ 293 (586)
..+ +..+..+.++ ......+|+|+||++|...+... ..+....+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 643 3334444432 13456799999999998875421 13456779999999999997643 24456
Q ss_pred HHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCC-C--CCCCCceEEEEEE---------------------
Q 007879 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS-A--KRPSTLTEEVVRI--------------------- 349 (586)
Q Consensus 294 ~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~--------------------- 349 (586)
.++..++ ..++++||||+...........+..++....... . ..........+..
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6667765 4679999999875433323333333322110000 0 0000000000000
Q ss_pred -------ecchh----hhHHH----HHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCC--------ceEEecCCCC
Q 007879 350 -------RRMRE----VNQEA----VLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAAL--------KAAELHGNLT 405 (586)
Q Consensus 350 -------~~~~~----~~~~~----~l~~~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~--------~~~~l~~~~~ 405 (586)
..... ..+.. .+..++. ....+++||||+++..++.++..|...+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000 00011 1222222 23457999999999999999999976543 2778999875
Q ss_pred HHHHHHHHHHHhcCCCc---EEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCC
Q 007879 406 QAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466 (586)
Q Consensus 406 ~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 466 (586)
. +|..+++.|++|+.+ |||||+++++|+|+|+|++||++++|+|+..|+||+||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 88999999999999999999999999999999999999999774
No 58
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-34 Score=271.41 Aligned_cols=202 Identities=35% Similarity=0.625 Sum_probs=184.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 125 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
.+|++++|++.+++++..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+.... .++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK---DNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS---CSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC---CCeeEEEEeC
Confidence 4699999999999999999999999999999999999999999999999999999999998875432 3457999999
Q ss_pred cHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc
Q 007879 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (586)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 283 (586)
|++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|...+... ...+.++++||+||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-VAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-CcCcccCCEEEEEChHHh
Confidence 9999999999999987766 78899999998888777777888999999999999988764 456889999999999999
Q ss_pred cCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEE
Q 007879 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (586)
Q Consensus 284 ~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~ 330 (586)
.+.+|...+..++..+++..|+++||||+++.+..++..++.+|..+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999988765
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-35 Score=284.76 Aligned_cols=220 Identities=35% Similarity=0.566 Sum_probs=188.9
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC------CCCC
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------RIPA 196 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~------~~~~ 196 (586)
...+|.+++|++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+..... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 4567999999999999999999999999999999999999999999999999999999999998875431 1234
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
+++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|..++... .+.+.++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT-SBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CCChhhCCEEE
Confidence 68999999999999999999999888889999999999888877888888999999999999998775 46688999999
Q ss_pred EeCcccccCCCcHHHHHHHHHHC--CC--CCcEEEEeecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCce
Q 007879 277 LDEADRLLELGFSAEIHELVRLC--PK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT 343 (586)
Q Consensus 277 iDEah~l~~~~~~~~i~~i~~~~--~~--~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (586)
+||||++++++|...+..++..+ +. .+|+++||||+++.+..++..++.+|..+.+.........+.
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 250 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCce
Confidence 99999999999999999999853 43 679999999999999999999999998887765443333333
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=279.47 Aligned_cols=209 Identities=32% Similarity=0.494 Sum_probs=180.2
Q ss_pred CcccCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCC---CCCCC
Q 007879 121 SFHANSFME-LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP---KRIPA 196 (586)
Q Consensus 121 ~~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~---~~~~~ 196 (586)
+....+|.+ +++++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+.... ....+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 344567888 79999999999999999999999999999999999999999999999999999998876432 11245
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
+++||++||++|+.|+++.+..+. ..++.+..++|+.........+..+++|+|+||++|...+... ...+.++++||
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lV 172 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITYLV 172 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT-CCCCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcCcccceEEE
Confidence 679999999999999999999985 5688899999998877777778888999999999999988764 56688999999
Q ss_pred EeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEe
Q 007879 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331 (586)
Q Consensus 277 iDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~ 331 (586)
+||||++.+++|...+..++..++..+|+++||||+++.+..++..++.+|+.+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999988764
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=9.7e-35 Score=278.03 Aligned_cols=209 Identities=39% Similarity=0.622 Sum_probs=185.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCC-CCCCeEEEEE
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLIL 202 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vlil 202 (586)
..+|.++++++.+++++..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+..... ...++++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999998875331 1235579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+||++|+.|+++.+..+....++.+..++|+.........+ .+++|+|+||++|..++.....+.+.++++||+||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999888889999999988766655544 57899999999999988876556788999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeC
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 333 (586)
+.+++|...+..++..++..+|+++||||+++.+..+.+.++.+|..+.+.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999887654
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=6.3e-35 Score=279.18 Aligned_cols=206 Identities=34% Similarity=0.555 Sum_probs=176.2
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
...+|++++|++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+.... .++++||+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~---~~~~~lil 104 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF---KETQALVL 104 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS---CSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEEE
Confidence 456799999999999999999999999999999999999999999999999999999999998875432 24579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCC-CcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 281 (586)
+||++|+.|+++.+..++...++.+..++|+.........+..+ ++|+|+||++|.+.+... .+.+..+++||+||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCch
Confidence 99999999999999999888888999999988766665555555 899999999999988764 4668889999999999
Q ss_pred cccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEee
Q 007879 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (586)
Q Consensus 282 ~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 332 (586)
++.+++|...+..++..++...|+++||||+++.+..++..++.+|..+.+
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999988765
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=282.56 Aligned_cols=206 Identities=39% Similarity=0.625 Sum_probs=183.3
Q ss_pred cccCCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCC-CCCeE
Q 007879 122 FHANSFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIR 198 (586)
Q Consensus 122 ~~~~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~ 198 (586)
....+|.+++ +++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+...... ..+.+
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 3456688887 99999999999999999999999999999999999999999999999999999988763311 13457
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEe
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViD 278 (586)
+||++||++||.|+++.+..+....+..+..++|+.........+..+++|+|+||++|..++.....+.+.++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999999988889999999999988888777777899999999999999987666778999999999
Q ss_pred CcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCC
Q 007879 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327 (586)
Q Consensus 279 Eah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~ 327 (586)
|||++++++|...+..++..++..+|+++||||+++.+..+.+.++.++
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999888754
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-35 Score=276.76 Aligned_cols=206 Identities=32% Similarity=0.550 Sum_probs=183.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~ 203 (586)
..+|.++++++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+.... .++++||++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~ 79 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER---AEVQAVITA 79 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS---CSCCEEEEC
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc---CCceEEEEc
Confidence 35799999999999999999999999999999999999999999999999999999999998875432 245799999
Q ss_pred CcHHHHHHHHHHHHHHhhcC----CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 204 PTRELAVQVHSMIEKIAQFT----DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
||++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|.+.+... .+.+.++++||+||
T Consensus 80 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDE 158 (219)
T 1q0u_A 80 PTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDE 158 (219)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT-CCCGGGCCEEEECS
T ss_pred CcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC-CCCcCcceEEEEcC
Confidence 99999999999999988766 68888889987665555555567899999999999988764 46688999999999
Q ss_pred cccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeC
Q 007879 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (586)
Q Consensus 280 ah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 333 (586)
||++.+++|...+..++..+++..|+++||||+++++..++..++.+|..+...
T Consensus 159 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 159 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred chHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 999999999999999999999999999999999999999999999999887653
No 65
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.6e-34 Score=275.12 Aligned_cols=206 Identities=33% Similarity=0.535 Sum_probs=182.0
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEE
Q 007879 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (586)
Q Consensus 122 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vli 201 (586)
....+|.++++++.+++++..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+.... .++++||
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~li 97 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---LSTQILI 97 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEEE
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999998876433 2457999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCc
Q 007879 202 LTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (586)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 280 (586)
++||++|+.|+++.+..+.... ++++..++|+.........+ .+++|+|+||++|.+++... .+.+.++++||+|||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELD-YLNPGSIRLFILDEA 175 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTT-SSCGGGCCEEEESSH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcC-CcccccCCEEEeCCc
Confidence 9999999999999999987654 88999999998876655544 46899999999999988764 566889999999999
Q ss_pred ccccCCC-cHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEee
Q 007879 281 DRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (586)
Q Consensus 281 h~l~~~~-~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 332 (586)
|++++++ |...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred hHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999997 999999999999999999999999999999999999998887654
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.2e-34 Score=269.90 Aligned_cols=204 Identities=44% Similarity=0.651 Sum_probs=183.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 126 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
+|.++++++.+++++..+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+........++++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999988754433446689999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccC
Q 007879 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (586)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 285 (586)
++|+.|+++.+..+... +++..++|+.........+..+++|+|+||++|...+... .+.+.++++||+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT-SSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC-CcchhhceEEEEEChhHhhc
Confidence 99999999999987543 7788889988877777777778999999999999988774 56788999999999999999
Q ss_pred CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEee
Q 007879 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (586)
Q Consensus 286 ~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 332 (586)
++|...+..++..++...|+++||||+++.+..+...++.+|..+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999987754
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.2e-34 Score=307.07 Aligned_cols=313 Identities=16% Similarity=0.201 Sum_probs=214.7
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~~il----~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|+|+|.++++++. .++++|++++||+|||+++ +.++..+..... ..++|||||+ .|+.||.+.+.+++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~~---~~~~LIv~P~-~l~~qw~~e~~~~~-- 109 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKENE---LTPSLVICPL-SVLKNWEEELSKFA-- 109 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTTC---CSSEEEEECS-TTHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcCC---CCCEEEEccH-HHHHHHHHHHHHHC--
Confidence 69999999998874 5789999999999999985 555555554322 2369999995 58899999999875
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCC
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~ 302 (586)
.+.++.+++|+... .....++|+|+||+.|..... +....+++||+||||++.+.+. .....+..++ .
T Consensus 110 ~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp TTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred CCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 35677777766422 122357999999999965433 2234789999999999987642 2334444443 4
Q ss_pred CcEEEEeecCchh-HHHH---HHHhc--------------------------------CCCeEEeeCCCC----CCCCCc
Q 007879 303 RQTMLFSATLTED-VDEL---IKLSL--------------------------------TKPLRLSADPSA----KRPSTL 342 (586)
Q Consensus 303 ~q~i~~SAT~~~~-~~~~---~~~~~--------------------------------~~~~~~~~~~~~----~~~~~~ 342 (586)
.+.+++|||+..+ ..++ +.... -.|..+...... ...+..
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSE
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCC
Confidence 5789999998532 2221 11100 012222111100 011112
Q ss_pred eEEEEEEecchh------------------------------------------------------hhHHHHHHHHhhc-
Q 007879 343 TEEVVRIRRMRE------------------------------------------------------VNQEAVLLSLCSK- 367 (586)
Q Consensus 343 ~~~~~~~~~~~~------------------------------------------------------~~~~~~l~~~~~~- 367 (586)
....+.+..... ..+...+..++..
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 222222221000 1112222223322
Q ss_pred -cCCceEEEEeccHHHHHHHHHHHhhc-CCceEEecCCCCHHHHHHHHHHHhcC-CCc-EEEecCcccccCCCCCccEEE
Q 007879 368 -TFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDVAARGLDIIGVQTVI 443 (586)
Q Consensus 368 -~~~~~~lIF~~s~~~~~~l~~~l~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~Gldi~~v~~VI 443 (586)
..+.++||||++...+..+...|... ++.+..+||++++.+|..+++.|++| ..+ +|++|+++++|+|++++++||
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 24679999999999999999999885 99999999999999999999999998 555 799999999999999999999
Q ss_pred EeCCCCChhHHHHHhhhcccCCCcceE--EEEeccCc
Q 007879 444 NYACPRDLTSYVHRVGRTARAGREGYA--VTFVTDND 478 (586)
Q Consensus 444 ~~~~p~s~~~y~Qr~GR~gR~g~~g~~--~~l~~~~d 478 (586)
+||+|||+..|.||+||++|.|+.+.+ +.|++...
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 999999999999999999999977655 55566553
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=4.4e-34 Score=271.21 Aligned_cols=206 Identities=33% Similarity=0.561 Sum_probs=177.6
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
...+|.++++++.+++.+..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+.... .++++||+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~---~~~~~lil 88 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALML 88 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC---CSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC---CCceEEEE
Confidence 356799999999999999999999999999999999999999999999999999999999998875432 24579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
+||++|+.|+++.+..+....++.+..++|+.........+.. ++|+|+||++|...+... ...+.++++||+||||+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADE 166 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHH
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhH
Confidence 9999999999999999988888999999998776655554444 899999999999988764 56688999999999999
Q ss_pred ccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeC
Q 007879 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (586)
Q Consensus 283 l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 333 (586)
+.+++|...+..++..++...|+++||||+++.+..++..++.+|..+.+.
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999887654
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-33 Score=266.24 Aligned_cols=205 Identities=36% Similarity=0.655 Sum_probs=180.2
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
...+|.+++|++.+++++..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+.... .++++||+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil 88 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVM 88 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT---TCCCEEEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC---CCEEEEEE
Confidence 346799999999999999999999999999999999999999999999999999999999998864432 23479999
Q ss_pred cCcHHHHHHHHHHHHHHhhcC-CceEEEEeCCCChHHHHHHhc-CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCc
Q 007879 203 TPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (586)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 280 (586)
+||++|+.|+++.+..+.... ++++..++|+.........+. ..++|+|+||++|...+... .+.+.+++++|+|||
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDEC 167 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESH
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCH
Confidence 999999999999999987765 789999999988766655554 35799999999999988764 566889999999999
Q ss_pred ccccC-CCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCCeEEe
Q 007879 281 DRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331 (586)
Q Consensus 281 h~l~~-~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~ 331 (586)
|++++ .++...+..++..++...|+++||||+++.+..++..++.+|..+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99987 4788889999999999999999999999999999999999987764
No 70
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-30 Score=277.09 Aligned_cols=330 Identities=18% Similarity=0.162 Sum_probs=240.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
+|+ +|+++|..++|.++.|+ |+.++||+|||++|.+|++...+.+ .+|+|++||++||.|.++++..++.+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G------~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG------KGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC------SCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC------CCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 799 89999999999999998 9999999999999999997555432 25999999999999999999999999
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHH-HHHHHhcC-----CcCcc---CceEEEEeCccccc-CCCc----
Q 007879 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLD---DLAVLILDEADRLL-ELGF---- 288 (586)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~l~~~~-----~~~l~---~~~~lViDEah~l~-~~~~---- 288 (586)
.++++++++|+.+...+.. ..+++|+|+||++| +++++.+. .+.++ .+.++||||||+|+ +.+.
T Consensus 147 lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLI 224 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLI 224 (997)
T ss_dssp TTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEE
T ss_pred cCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCee
Confidence 9999999999988654443 34689999999999 89998753 24577 89999999999976 2110
Q ss_pred -----------HHHHHHHHHHCC---------------------------------------------------------
Q 007879 289 -----------SAEIHELVRLCP--------------------------------------------------------- 300 (586)
Q Consensus 289 -----------~~~i~~i~~~~~--------------------------------------------------------- 300 (586)
...+..++..++
T Consensus 225 ISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i 304 (997)
T 2ipc_A 225 ISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHML 304 (997)
T ss_dssp EEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHH
T ss_pred eeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHH
Confidence 011111111110
Q ss_pred ------------------------------------------------------------------------CCCcEEEE
Q 007879 301 ------------------------------------------------------------------------KRRQTMLF 308 (586)
Q Consensus 301 ------------------------------------------------------------------------~~~q~i~~ 308 (586)
...++.+|
T Consensus 305 ~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGM 384 (997)
T 2ipc_A 305 IQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGM 384 (997)
T ss_dssp HHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheec
Confidence 11367899
Q ss_pred eecCchhHHHHHHHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHH
Q 007879 309 SATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRL 386 (586)
Q Consensus 309 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l 386 (586)
|+|...+..++...+--..+.+ +..............+. ....+...+..-+. ...+.||||+|.|....+.|
T Consensus 385 TGTA~tE~~Ef~~iY~l~Vv~I---PTn~p~~R~D~~d~vy~--t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 385 TGTAKTEEKEFQEIYGMDVVVV---PTNRPVIRKDFPDVVYR--TEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp ESSCGGGHHHHHHHHCCCEEEC---CCSSCCCCEEEEEEEES--SHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred CCCchHHHHHHHHHhCCCEEEc---CCCCCcccccCCCeEEc--CHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 9999888888777775543332 22222222222222222 23344444433332 23578999999999999999
Q ss_pred HHHHh---------------------------------------------------------------------------
Q 007879 387 KILFG--------------------------------------------------------------------------- 391 (586)
Q Consensus 387 ~~~l~--------------------------------------------------------------------------- 391 (586)
+.+|.
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -hcCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEecCcccccCCCCCc-------------------c----------
Q 007879 392 -LAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLIATDVAARGLDIIGV-------------------Q---------- 440 (586)
Q Consensus 392 -~~~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldi~~v-------------------~---------- 440 (586)
..|++..+|++.....+-.-+- ..| .-.|.|||++|+||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~EAeIIA---qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHAREAEIVA---QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHHHHHHH---TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHHHHHHH---hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 4677777888765433322222 234 34699999999999999432 1
Q ss_pred ---------------------------------------------EEEEeCCCCChhHHHHHhhhcccCCCcceEEEEec
Q 007879 441 ---------------------------------------------TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475 (586)
Q Consensus 441 ---------------------------------------------~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~ 475 (586)
+||....+.|..-..|..||+||.|.+|.+..|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 89999999999999999999999999999999998
Q ss_pred cCcHHH-------HHHHHHHhcC
Q 007879 476 DNDRSL-------LKAIAKRAGS 491 (586)
Q Consensus 476 ~~d~~~-------~~~i~~~~~~ 491 (586)
-.|.-+ +..+...++.
T Consensus 697 LeDdLmr~fg~~~~~~~m~~l~~ 719 (997)
T 2ipc_A 697 FDDDLMRLFASDRVIAMLDRMGF 719 (997)
T ss_dssp SSSHHHHHSSCTTHHHHHHHTCC
T ss_pred CChHHHHhhchHHHHHHHHHcCC
Confidence 877432 3455566554
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.6e-32 Score=292.92 Aligned_cols=322 Identities=16% Similarity=0.174 Sum_probs=216.2
Q ss_pred CCcHHHHHHHHHHh---------cCCCeEEEcCCCchhHHHhhhhhHHHHhcCC-CC-CCCeEEEEEcCcHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLAL---------TGRDICGSAITGSGKTAAFALPTLERLLYRP-KR-IPAIRVLILTPTRELAVQVHSM 215 (586)
Q Consensus 147 ~~~~~Q~~~i~~il---------~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~-~~-~~~~~vlil~Ptr~La~Q~~~~ 215 (586)
.|+|||.+++.++. .++++|++++||+|||++++..+ ..++... .. ....++|||||+ .|+.||.+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i-~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI-WTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHH-HHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHH-HHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 69999999999984 35678999999999999864444 4444332 11 123469999997 788999999
Q ss_pred HHHHhhcCCceEEEEeCCCChHHHH---HHhc-----CCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC
Q 007879 216 IEKIAQFTDIRCCLVVGGLSTKMQE---TALR-----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287 (586)
Q Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~ 287 (586)
+.++... .+.+..++++....... ..+. ..++|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh
Confidence 9988654 45566666654332211 1111 147899999999976432 3444678999999999998764
Q ss_pred cHHHHHHHHHHCCCCCcEEEEeecCchhH----HHHH---------------HHhc------------------------
Q 007879 288 FSAEIHELVRLCPKRRQTMLFSATLTEDV----DELI---------------KLSL------------------------ 324 (586)
Q Consensus 288 ~~~~i~~i~~~~~~~~q~i~~SAT~~~~~----~~~~---------------~~~~------------------------ 324 (586)
......+. .+ .....+++|||+-.+- ..++ ..+.
T Consensus 209 -~~~~~al~-~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 209 -NQTYLALN-SM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp -HHHHHHHH-HH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred -hHHHHHHH-hc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 22223333 33 3456799999984321 0000 0000
Q ss_pred -----CCCeEEeeCCC--CCCCCCceEEEEEEecc---------------------------------------------
Q 007879 325 -----TKPLRLSADPS--AKRPSTLTEEVVRIRRM--------------------------------------------- 352 (586)
Q Consensus 325 -----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------------------------------------- 352 (586)
-.|..+.-... ....+......+.+...
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00000000000 00011111111111100
Q ss_pred ------------------------------hhhhHHHHHHHHhh---ccCCceEEEEeccHHHHHHHHHHHhhcCCceEE
Q 007879 353 ------------------------------REVNQEAVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (586)
Q Consensus 353 ------------------------------~~~~~~~~l~~~~~---~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~ 399 (586)
....+...+..++. ...+.++||||++...++.+..+|...++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 00111122222222 234679999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCc---EEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcce--EEEEe
Q 007879 400 LHGNLTQAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFV 474 (586)
Q Consensus 400 l~~~~~~~~r~~~~~~f~~g~~~---vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~ 474 (586)
+||+++..+|..+++.|++|... +||+|.++++|||++++++||+||+|||+..|.|++||++|.|+... ++.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998654 89999999999999999999999999999999999999999997654 55566
Q ss_pred ccC
Q 007879 475 TDN 477 (586)
Q Consensus 475 ~~~ 477 (586)
+..
T Consensus 526 ~~~ 528 (644)
T 1z3i_X 526 STG 528 (644)
T ss_dssp ETT
T ss_pred ECC
Confidence 665
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=310.50 Aligned_cols=330 Identities=18% Similarity=0.256 Sum_probs=226.0
Q ss_pred CCcHHHHHHHHHHh----cCCCeEEEcCCCchhHHHhhhhhHHHHh-cCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 147 ~~~~~Q~~~i~~il----~g~~~lv~~~TGsGKT~~~~l~~l~~l~-~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
.|+|||.+++.+++ .++++|++++||+|||++++ .++..+. .... ..++||||| ..|+.||.+.+.+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai-~~i~~l~~~~~~---~~~~LIV~P-~sll~qW~~E~~~~~- 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTV-AFISWLIFARRQ---NGPHIIVVP-LSTMPAWLDTFEKWA- 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHH-HHHHHHHHHHSC---CSCEEEECC-TTTHHHHHHHHHHHS-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHH-HHHHHHHHhcCC---CCCEEEEEC-chHHHHHHHHHHHHC-
Confidence 69999999999887 68899999999999999864 4444333 2221 225899999 677899999998875
Q ss_pred cCCceEEEEeCCCChHHHHHH------------hcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcH
Q 007879 222 FTDIRCCLVVGGLSTKMQETA------------LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~ 289 (586)
+++++.+++|+......... ....++|+|+|++.+...... +....|++|||||||++.+..
T Consensus 310 -p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 310 -PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp -TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--
T ss_pred -CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--
Confidence 46777777776554433221 123578999999999765432 223368999999999997644
Q ss_pred HHHHHHHHHCCCCCcEEEEeecCch----hHHHHHHHhcCC-----------------------------CeEEeeCCC-
Q 007879 290 AEIHELVRLCPKRRQTMLFSATLTE----DVDELIKLSLTK-----------------------------PLRLSADPS- 335 (586)
Q Consensus 290 ~~i~~i~~~~~~~~q~i~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~- 335 (586)
......+..+ .....+++||||-. ++..++...... |..+.....
T Consensus 384 s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 2233334444 34456999999832 222222222111 111110000
Q ss_pred -CCCCCCceEEEEEEecch-------------------------------------------------------------
Q 007879 336 -AKRPSTLTEEVVRIRRMR------------------------------------------------------------- 353 (586)
Q Consensus 336 -~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 353 (586)
....+......+.+....
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 000111111222211000
Q ss_pred -----------hhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC
Q 007879 354 -----------EVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (586)
Q Consensus 354 -----------~~~~~~~l~~~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 420 (586)
...+...+..++.. ..+.++||||+....+..|..+|...|+.+..+||+++..+|..++..|++|.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 01122233333332 24679999999999999999999999999999999999999999999999865
Q ss_pred C---cEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcc--eEEEEeccC--cHHHHHHHHHHh
Q 007879 421 V---DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREG--YAVTFVTDN--DRSLLKAIAKRA 489 (586)
Q Consensus 421 ~---~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g--~~~~l~~~~--d~~~~~~i~~~~ 489 (586)
. .+|++|.+++.|||++.+++||+||+||||..+.||+||++|.|+.. .++.|++.. +..++..+.++.
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 4 48999999999999999999999999999999999999999999764 456667765 445555555443
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=268.25 Aligned_cols=210 Identities=34% Similarity=0.540 Sum_probs=177.3
Q ss_pred ccCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeE
Q 007879 123 HANSFMEL----NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198 (586)
Q Consensus 123 ~~~~f~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 198 (586)
...+|.++ ++++.+++++..+||..|+++|.++++.++.|+++++++|||||||++|++|++..+.... ..+++
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~ 100 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--NKGFR 100 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC--SSSCC
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc--cCCce
Confidence 34567776 8999999999999999999999999999999999999999999999999999999886432 23557
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHH-HHhcCCCcEEEECcHHHHHHHHhcC-CcCccCceEEE
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE-TALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLI 276 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ili~Tp~~l~~~l~~~~-~~~l~~~~~lV 276 (586)
+||++||++|+.|+++.+..+....++.+..++|+....... .....+++|+|+||++|..++.... .+.+.++++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 999999999999999999999888888888777654322221 1234568999999999999987653 46688999999
Q ss_pred EeCcccccC---CCcHHHHHHHHHHC-CCCCcEEEEeecCchhHHHHHHHhcCCCeEEeeCC
Q 007879 277 LDEADRLLE---LGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334 (586)
Q Consensus 277 iDEah~l~~---~~~~~~i~~i~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 334 (586)
+||||++.+ .+|...+..++..+ +...|+++||||+++++..++..++.+|+.+.+..
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999987 46888888887765 45789999999999999999999999999887754
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=6.2e-32 Score=303.30 Aligned_cols=327 Identities=16% Similarity=0.120 Sum_probs=215.1
Q ss_pred HHHHHHHHHcC-------CCCCcHHHHHHHHHHhc--------------CCCeEEEcCCCchhHHHhhhhhHHHHhcCCC
Q 007879 134 RPLLRACEALG-------YSKPTPIQAACIPLALT--------------GRDICGSAITGSGKTAAFALPTLERLLYRPK 192 (586)
Q Consensus 134 ~~l~~~l~~~~-------~~~~~~~Q~~~i~~il~--------------g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~ 192 (586)
+.++..+..+- ...|+|+|..|++.++. +++++++++||||||+++ ++++..+... .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-D 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-T
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-C
Confidence 44555555531 23599999999999876 368999999999999996 7776544321 1
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh-cCCCcEEEECcHHHHHHHHhcCC-cCcc
Q 007879 193 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMS-VDLD 270 (586)
Q Consensus 193 ~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~l~~~~~-~~l~ 270 (586)
...++|||+|+++|+.|+.+.+..+... .+.++.+.......+ ..+++|+|+||++|...+..... ..+.
T Consensus 329 --~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 329 --FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp --TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred --CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 2358999999999999999998876532 123444444444555 35689999999999988765321 2356
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecCchhH--------H-------------HHHHHhcCCCeE
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV--------D-------------ELIKLSLTKPLR 329 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~--------~-------------~~~~~~~~~~~~ 329 (586)
.+.+||+||||++.. ......+...+| +.++++|||||.... . +.+......|+.
T Consensus 401 ~~~lvIiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~ 476 (1038)
T 2w00_A 401 QQVVFIFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFK 476 (1038)
T ss_dssp SCEEEEEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEE
T ss_pred cccEEEEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeE
Confidence 789999999999763 334556667776 478999999997421 1 112222222332
Q ss_pred EeeCCCCCCCCCce-E-E---E--EEE-ecchhhhHHHH----HHHHhh-c-------cCCceEEEEeccHHHHHHHHHH
Q 007879 330 LSADPSAKRPSTLT-E-E---V--VRI-RRMREVNQEAV----LLSLCS-K-------TFTSKVIIFSGTKQAAHRLKIL 389 (586)
Q Consensus 330 ~~~~~~~~~~~~~~-~-~---~--~~~-~~~~~~~~~~~----l~~~~~-~-------~~~~~~lIF~~s~~~~~~l~~~ 389 (586)
+............. . . . ... .......+... +..... . ..+.++||||+|+..|..++..
T Consensus 477 v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~ 556 (1038)
T 2w00_A 477 VDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYAT 556 (1038)
T ss_dssp EEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHH
T ss_pred EEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHH
Confidence 21111000000000 0 0 0 000 00000001111 111111 1 1346899999999999999999
Q ss_pred HhhcC------------Cce-EEecCC----------C----------CH-----------------------------H
Q 007879 390 FGLAA------------LKA-AELHGN----------L----------TQ-----------------------------A 407 (586)
Q Consensus 390 l~~~~------------~~~-~~l~~~----------~----------~~-----------------------------~ 407 (586)
|...+ +++ .++|+. + ++ .
T Consensus 557 l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~ 636 (1038)
T 2w00_A 557 FKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQN 636 (1038)
T ss_dssp HHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHH
T ss_pred HHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhH
Confidence 97654 555 445542 1 22 2
Q ss_pred HHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCc----ceEEEEec
Q 007879 408 QRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE----GYAVTFVT 475 (586)
Q Consensus 408 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~----g~~~~l~~ 475 (586)
.|..++.+|++|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+||+||++|.+.. |.++.|+.
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 47889999999999999999999999999999 788999999999999999999998753 55655554
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=7.4e-28 Score=261.86 Aligned_cols=118 Identities=23% Similarity=0.299 Sum_probs=110.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCC-
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 447 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~- 447 (586)
.+.++||||+|+..++.+..+|...|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHH
Q 007879 448 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (586)
Q Consensus 448 ----p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~ 487 (586)
|.+...|+||+||+||.| +|.|++|++..+....+.+.+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 899999999999999985 899999999887766655543
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=7.1e-27 Score=254.02 Aligned_cols=117 Identities=25% Similarity=0.353 Sum_probs=109.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCC-
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 447 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~- 447 (586)
.+.++||||+|+..++.+..+|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHH
Q 007879 448 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (586)
Q Consensus 448 ----p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~ 486 (586)
|.+...|+||+||+||. .+|.|++|+++.+....+.+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999999999999998 689999999998776555443
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=9.8e-27 Score=208.32 Aligned_cols=155 Identities=33% Similarity=0.556 Sum_probs=141.3
Q ss_pred CCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHh
Q 007879 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (586)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~ 417 (586)
.+..+.+.++.+. ...+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~---~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVR---EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECC---GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECC---hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3445777777664 3556777777777777789999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCcccc
Q 007879 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (586)
Q Consensus 418 ~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~ 495 (586)
+|..+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.+++|+++.+...++.+.+.++.++..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988877653
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.8e-26 Score=207.17 Aligned_cols=158 Identities=27% Similarity=0.421 Sum_probs=138.8
Q ss_pred CCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhc
Q 007879 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (586)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 418 (586)
+..+.+.++.+.. ...+...+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++
T Consensus 5 ~~~i~q~~~~~~~--~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 5 LNNIRQYYVLCEH--RKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp BCCEEEEEEECSS--HHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred cCCceEEEEEcCC--hHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4567777776643 23467778888877778899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCcccccCCCCCccEEEEeCCC------CChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCc
Q 007879 419 QHVDFLIATDVAARGLDIIGVQTVINYACP------RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492 (586)
Q Consensus 419 g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p------~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~ 492 (586)
|..+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.+++|+++.+...+..+.+.++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999998887
Q ss_pred cccccc
Q 007879 493 LKSRIV 498 (586)
Q Consensus 493 ~~~~~~ 498 (586)
+.....
T Consensus 163 ~~~~~~ 168 (175)
T 2rb4_A 163 IKQLNA 168 (175)
T ss_dssp CEEECS
T ss_pred ccccCC
Confidence 765443
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=7.4e-26 Score=211.53 Aligned_cols=146 Identities=34% Similarity=0.469 Sum_probs=134.6
Q ss_pred hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccccc
Q 007879 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (586)
Q Consensus 354 ~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 433 (586)
...+...+..++....++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35677778888877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccch
Q 007879 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (586)
Q Consensus 434 ldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~~ 499 (586)
+|+|++++||+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+..+..+.....+
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 999999999999999999999999999999999999999999999999999999998887765443
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=210.58 Aligned_cols=165 Identities=32% Similarity=0.476 Sum_probs=127.8
Q ss_pred HHhcCCCeEEeeCCCCCCCCCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEe
Q 007879 321 KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (586)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l 400 (586)
+.++.+|..+.+.........+.+.+..+. ...+...+..++... ++++||||+++..++.++..|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~---~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVK---EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECC---GGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcC---hHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 456677877777655555667888877664 345667777777654 5689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccC-cH
Q 007879 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DR 479 (586)
Q Consensus 401 ~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-d~ 479 (586)
||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 67
Q ss_pred HHHHHHHHHh
Q 007879 480 SLLKAIAKRA 489 (586)
Q Consensus 480 ~~~~~i~~~~ 489 (586)
..++.+.+.+
T Consensus 165 ~~~~~l~~~l 174 (191)
T 2p6n_A 165 SVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666544
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3.3e-26 Score=206.53 Aligned_cols=154 Identities=29% Similarity=0.470 Sum_probs=138.8
Q ss_pred CCceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcC
Q 007879 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419 (586)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g 419 (586)
..+.|.++.+. ...+...+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~---~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLK---DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECC---GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECC---hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 45677777664 355677788888777778999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccC-cHHHHHHHHHHhcCccccc
Q 007879 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 420 ~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-d~~~~~~i~~~~~~~~~~~ 496 (586)
..+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++. +...++.+.+.++.++...
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 158 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEEC
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhC
Confidence 9999999999999999999999999999999999999999999999999999999876 5678889999888777653
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=6.5e-26 Score=203.51 Aligned_cols=154 Identities=27% Similarity=0.456 Sum_probs=134.2
Q ss_pred CceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCC
Q 007879 341 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (586)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 420 (586)
.+.|.++.+... ..+...+..++....++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~~--~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEE--EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESG--GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcc--hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 456666666432 236777777877777889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccc
Q 007879 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (586)
Q Consensus 421 ~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~ 496 (586)
.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.|++|+++.+...+..+.+.++..+...
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 156 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEEC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888776653
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=204.75 Aligned_cols=150 Identities=35% Similarity=0.548 Sum_probs=120.9
Q ss_pred CCCCceEEEEEEecchhhhHHHHHHHHhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHH
Q 007879 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416 (586)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f 416 (586)
.+..+.+.++.+. ...+...+..++... .+.++||||+++..++.++..|...++.+..+||++++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~---~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECC---GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeC---cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 4557888877764 345666777777654 578999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhc
Q 007879 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490 (586)
Q Consensus 417 ~~g~~~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~ 490 (586)
++|..+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888777653
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=5.3e-25 Score=215.23 Aligned_cols=155 Identities=32% Similarity=0.456 Sum_probs=135.3
Q ss_pred ceEEEEEEecchhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCC
Q 007879 342 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421 (586)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 421 (586)
+.+.++.+. ...+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~---~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAP---VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECC---SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECC---HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 345555443 34577777777776668999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccch
Q 007879 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (586)
Q Consensus 422 ~vLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~~ 499 (586)
+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+.++..+.....+
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887764443
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=7.2e-25 Score=206.36 Aligned_cols=168 Identities=21% Similarity=0.176 Sum_probs=120.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHH-HHHHHHHHhh
Q 007879 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ-VHSMIEKIAQ 221 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q-~~~~~~~l~~ 221 (586)
.+...|+++|.++++.++.++++++.+|||+|||++|+++++..+........+.++||++|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344579999999999999999999999999999999999988776543222234579999999999999 7888888765
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCC-----cCccCceEEEEeCcccccCCCcHHHH-HHH
Q 007879 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEI-HEL 295 (586)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~-----~~l~~~~~lViDEah~l~~~~~~~~i-~~i 295 (586)
. ++++..++|+.........+...++|+|+||+.|...+..... +.+.++++|||||||++...++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 7788888887655443434445689999999999998876422 55788999999999999876554443 333
Q ss_pred HHHC-------------CCCCcEEEEeec
Q 007879 296 VRLC-------------PKRRQTMLFSAT 311 (586)
Q Consensus 296 ~~~~-------------~~~~q~i~~SAT 311 (586)
+... ....++|+||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2221 156899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=3.1e-26 Score=206.57 Aligned_cols=144 Identities=35% Similarity=0.589 Sum_probs=131.0
Q ss_pred hhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccC
Q 007879 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (586)
Q Consensus 355 ~~~~~~l~~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 434 (586)
..+...+..++....++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 34555666666666678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceEEEEeccCcHHHHHHHHHHhcCccccccc
Q 007879 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIV 498 (586)
Q Consensus 435 di~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~~~~~~~~~~ 498 (586)
|+|++++||+|++|+++..|+||+||+||.|+.|.+++|++..+...++.+.+.++..+....+
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 158 (170)
Confidence 9999999999999999999999999999999999999999999999998888877776655443
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=9.1e-23 Score=217.58 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=86.6
Q ss_pred cCCCCCcHHHHHHHH----HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 143 LGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 143 ~~~~~~~~~Q~~~i~----~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
.|| .|+|+|.+++. .+..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+..
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh
Confidence 467 69999999865 45678999999999999999999998764 34799999999999999987776
Q ss_pred HhhcCCceEEEEeCCCCh--------H------------------------HHH---------------HHhcCCCcEEE
Q 007879 219 IAQFTDIRCCLVVGGLST--------K------------------------MQE---------------TALRSMPDIVV 251 (586)
Q Consensus 219 l~~~~~~~~~~~~~~~~~--------~------------------------~~~---------------~~~~~~~~Ili 251 (586)
+ ++++..+.|.... . ..+ +.....++|||
T Consensus 74 l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 74 L----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp G----TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred c----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 3 4444444432210 0 000 01123469999
Q ss_pred ECcHHHHHHHHhcC-C-----cCccCceEEEEeCccccc
Q 007879 252 ATPGRMIDHLRNSM-S-----VDLDDLAVLILDEADRLL 284 (586)
Q Consensus 252 ~Tp~~l~~~l~~~~-~-----~~l~~~~~lViDEah~l~ 284 (586)
+|+..|++.+.... . -.+....++||||||.+.
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999987543321 1 024567899999999984
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=191.48 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=132.0
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 007879 134 RPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (586)
Q Consensus 134 ~~l~~~l~~~~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~ 213 (586)
+.+.+.+.......++++|.++++.+..|++++++|+||||||+++.++++..+..... ...+++++++|+++|+.|+.
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccchHHHHHHH
Confidence 33344444444456899999999999999999999999999999988998887765543 23458999999999999998
Q ss_pred HHHHHHhhc-CCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccc-cCCCcH-H
Q 007879 214 SMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFS-A 290 (586)
Q Consensus 214 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l-~~~~~~-~ 290 (586)
+.+...... .+..++....... .....+++|+|+||++|++++.. .+.++++|||||||++ ++.+|. .
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHH
Confidence 887654332 2344443222111 00124578999999999999876 3789999999999986 666666 4
Q ss_pred HHHHHHHHCCCCCcEEEEeecCchhHHHHHHHhcCCC
Q 007879 291 EIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP 327 (586)
Q Consensus 291 ~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~ 327 (586)
.+..+.... +..|+++||||++... +...+...|
T Consensus 198 ~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 198 VLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 566666665 4789999999999776 444444433
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=2.4e-20 Score=199.68 Aligned_cols=280 Identities=17% Similarity=0.103 Sum_probs=179.1
Q ss_pred CCcHHHHHHHHH----HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIPL----ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~~----il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.++|+|.+.+.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+..+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------~~~v~i~~pt~~l~~q~~~~~~~l~~~ 73 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------KPKVLFVVRTHNEFYPIYRDLTKIREK 73 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------CSEEEEEESSGGGHHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------CCeEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 589999987764 4578999999999999999999999972 347999999999999999999988777
Q ss_pred CCceEEEEeCCCCh---------------------------------HHHH------------------HHhcCCCcEEE
Q 007879 223 TDIRCCLVVGGLST---------------------------------KMQE------------------TALRSMPDIVV 251 (586)
Q Consensus 223 ~~~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~Ili 251 (586)
.++++..+.|..+. .... +.....++|||
T Consensus 74 ~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV 153 (551)
T 3crv_A 74 RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153 (551)
T ss_dssp SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEE
T ss_pred cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEE
Confidence 78888887763211 1111 22234679999
Q ss_pred ECcHHHHHHHHhcCCcCc-cCceEEEEeCcccccCCC-------------------------------------------
Q 007879 252 ATPGRMIDHLRNSMSVDL-DDLAVLILDEADRLLELG------------------------------------------- 287 (586)
Q Consensus 252 ~Tp~~l~~~l~~~~~~~l-~~~~~lViDEah~l~~~~------------------------------------------- 287 (586)
+||..|++...... +.+ ....++||||||.+.+ .
T Consensus 154 ~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 154 LTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred eCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999998764432 222 4678999999998754 1
Q ss_pred ------------cHHHHHHH----------------------------HH----------------------------HC
Q 007879 288 ------------FSAEIHEL----------------------------VR----------------------------LC 299 (586)
Q Consensus 288 ------------~~~~i~~i----------------------------~~----------------------------~~ 299 (586)
+...+..+ +. .+
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~ 311 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLL 311 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGG
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHH
Confidence 00000000 00 01
Q ss_pred CCC-CcEEEEeecCchhHHHHHHHhcCC--CeEE---eeCCCCCCCCCceEEEEEEecc-h---h---hh----HHHHHH
Q 007879 300 PKR-RQTMLFSATLTEDVDELIKLSLTK--PLRL---SADPSAKRPSTLTEEVVRIRRM-R---E---VN----QEAVLL 362 (586)
Q Consensus 300 ~~~-~q~i~~SAT~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~-~---~---~~----~~~~l~ 362 (586)
... ..+|++|||+.+ ...+.. .+.- +... ..... .+. -.+..+.++.. . . .. -...+.
T Consensus 312 ~~~~~svIltSaTL~~-~~~~~~-~lGl~~~~~~~~~~~~~~--spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 312 NDNELSIILMSGTLPP-REYMEK-VWGIKRNMLYLDVEREIQ--KRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GCTTCEEEEEESSCCC-HHHHHH-TSCCCSCEEEEEHHHHTT--SCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred hccCceEEEEeeCCCc-HHHHHH-HhCCCCccccccceeecC--CcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 123 678999999987 333333 3332 2210 11001 111 12222222211 0 0 11 111222
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEec--CcccccCCCC---
Q 007879 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT--DVAARGLDII--- 437 (586)
Q Consensus 363 ~~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT--~~~~~Gldi~--- 437 (586)
.++ ...++++|||++|+...+.+... .+..+..-..+++. ..+++.|+.+...||++| ..+.+|||+|
T Consensus 387 ~l~-~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 387 KIY-FQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HHH-HHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred HHH-HhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccC
Confidence 233 33467999999999999998863 34444443334453 456777754445899998 6899999999
Q ss_pred C--ccEEEEeCCCC
Q 007879 438 G--VQTVINYACPR 449 (586)
Q Consensus 438 ~--v~~VI~~~~p~ 449 (586)
+ ++.||..++|.
T Consensus 460 g~~l~~viI~~lPf 473 (551)
T 3crv_A 460 RSLISDVVIVGIPY 473 (551)
T ss_dssp EESEEEEEEESCCC
T ss_pred CcceeEEEEEcCCC
Confidence 4 78899988775
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.7e-22 Score=196.69 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=124.4
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.|+++|.++++.++.+++.++++|||+|||+++++++...+... ..++||++||++|+.|+.+.+.++....+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-----SSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 69999999999999988899999999999999988777665432 2279999999999999999999987666777
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEE
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i 306 (586)
+..+.++..... .....++|+|+||+.+.... ...+.++++||+||||++.+ ..+..++..++...+++
T Consensus 188 ~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 188 IKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (282)
T ss_dssp EEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEE
T ss_pred EEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEE
Confidence 888877764432 22356899999999875431 23467899999999999974 46667777777789999
Q ss_pred EEeecCchhH
Q 007879 307 LFSATLTEDV 316 (586)
Q Consensus 307 ~~SAT~~~~~ 316 (586)
+||||+++..
T Consensus 257 ~lSATp~~~~ 266 (282)
T 1rif_A 257 GLSGSLRDGK 266 (282)
T ss_dssp EECSSCCTTS
T ss_pred EEeCCCCCcc
Confidence 9999998654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=2.8e-19 Score=169.84 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=109.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.|+++|.++++.++.++++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+..+ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~~----~~~ 159 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGG----CGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHhC----CCC
Confidence 6899999999999999999999999999999987666542 236999999999999999888873 667
Q ss_pred -EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcE
Q 007879 227 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (586)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~ 305 (586)
+..+.|+.. ...+|+|+||+.+....... ...+++|||||||++.+..+.. ++..++ ..++
T Consensus 160 ~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~~ 221 (237)
T 2fz4_A 160 YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFR 221 (237)
T ss_dssp GEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSEE
T ss_pred eEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHHH----HHHhcc-CCEE
Confidence 777777653 35799999999987765431 2468999999999998876543 444444 6788
Q ss_pred EEEeecCchh
Q 007879 306 MLFSATLTED 315 (586)
Q Consensus 306 i~~SAT~~~~ 315 (586)
++||||+...
T Consensus 222 l~LSATp~r~ 231 (237)
T 2fz4_A 222 LGLTATFERE 231 (237)
T ss_dssp EEEEESCC--
T ss_pred EEEecCCCCC
Confidence 9999998753
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=3.6e-18 Score=184.04 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCcHHHHHHHH----HHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~----~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|+|.|.+.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----KLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----CCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 48999988875 456799999999999999999999999987653 347999999999999999999998876
Q ss_pred CCceEEEEeCC
Q 007879 223 TDIRCCLVVGG 233 (586)
Q Consensus 223 ~~~~~~~~~~~ 233 (586)
.++++..+.|+
T Consensus 78 ~~~~~~~l~gr 88 (620)
T 4a15_A 78 MKIRAIPMQGR 88 (620)
T ss_dssp SCCCEEECCCH
T ss_pred cCeEEEEEECC
Confidence 67777766654
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=2.6e-19 Score=172.89 Aligned_cols=123 Identities=12% Similarity=0.210 Sum_probs=95.5
Q ss_pred hhHHHHHHHHhhcc--CCceEEEEeccHHHHHHHHHHHhhc-CCceEEecCCCCHHHHHHHHHHHhcC-CCc-EEEecCc
Q 007879 355 VNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDV 429 (586)
Q Consensus 355 ~~~~~~l~~~~~~~--~~~~~lIF~~s~~~~~~l~~~l~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~-vLvaT~~ 429 (586)
..+...+..++... .+.++||||++...++.+..+|... |+.+..+||++++.+|..+++.|++| ... +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 45566666666543 5789999999999999999999885 99999999999999999999999999 677 7899999
Q ss_pred ccccCCCCCccEEEEeCCCCChhHHHHHhhhcccCCCcceE--EEEeccC
Q 007879 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA--VTFVTDN 477 (586)
Q Consensus 430 ~~~Gldi~~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~--~~l~~~~ 477 (586)
+++|+|++++++||+||+|||+..|.||+||++|.|+.+.+ +.|++..
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999987654 5566665
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.86 E-value=4.2e-09 Score=113.43 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHhcCCCeEEEcCCCchhH--HHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 149 TPIQAACIPLALTGRDICGSAITGSGKT--AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 149 ~~~Q~~~i~~il~g~~~lv~~~TGsGKT--~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
++.|+.+++.++.++.+++.|++|+||| ++++++++..+... .+.++++++||..+|.++.+.+..+....++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~----~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG----ERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS----CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc----CCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999 45555555543211 23479999999999999988887765544432
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEE
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i 306 (586)
..... .... . ...-..++-.+|+... +... ......+++||||||+ |++ ...+..++..++...|+|
T Consensus 227 ~~~~~-~~~~--~---~~Tih~ll~~~~~~~~--~~~~-~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 227 DEQKK-RIPE--D---ASTLHRLLGAQPGSQR--LRHH-AGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp SCCCC-SCSC--C---CBTTTSCC-------------C-TTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEE
T ss_pred HHHHh-ccch--h---hhhhHhhhccCCCchH--HHhc-cCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEE
Confidence 11100 0000 0 0000112222332211 1111 1112378999999999 444 456778888899889988
Q ss_pred EEeec
Q 007879 307 LFSAT 311 (586)
Q Consensus 307 ~~SAT 311 (586)
++.-.
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 87644
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.40 E-value=2.2e-06 Score=82.63 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=88.0
Q ss_pred hhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccc
Q 007879 355 VNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (586)
Q Consensus 355 ~~~~~~l~~~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 432 (586)
+.|...+..++. ...+++||||++..+..+.+..+|...++++..+.|.....++. -.++...|.+.|..++-
T Consensus 108 SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~ 182 (328)
T 3hgt_A 108 SGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGIN 182 (328)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCC
Confidence 455555555554 33578999999999999999999999999999999986543221 12455566666777777
Q ss_pred cCC-----CCCccEEEEeCCCCChhHH-HHHhhhcccCC----CcceEEEEeccCcHH
Q 007879 433 GLD-----IIGVQTVINYACPRDLTSY-VHRVGRTARAG----REGYAVTFVTDNDRS 480 (586)
Q Consensus 433 Gld-----i~~v~~VI~~~~p~s~~~y-~Qr~GR~gR~g----~~g~~~~l~~~~d~~ 480 (586)
|+| +.+.++||.||+.||+..- +|++-|++|.| ++-.++.|++.+...
T Consensus 183 gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 776 6789999999999999986 99999999973 345688888876643
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.20 E-value=5e-06 Score=86.56 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=81.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcC----C-CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 007879 142 ALGYSKPTPIQAACIPLALTG----R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (586)
Q Consensus 142 ~~~~~~~~~~Q~~~i~~il~g----~-~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~ 216 (586)
-+.|..|++-|.+++..++.. + .+++.|+.|||||.+ +..++..+...+. ..+++++||...|..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~----~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE----TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC----CCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC----ceEEEecCcHHHHHHHHhhh
Confidence 356888999999999877542 3 788999999999975 4555666555432 25999999999887665443
Q ss_pred HHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHH
Q 007879 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (586)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 296 (586)
+..+..++.-..... ....... .+.. .....+..+++|||||++.+. ...+..++
T Consensus 95 -------~~~~~T~h~~~~~~~---~~~~~~~-~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~ 149 (459)
T 3upu_A 95 -------GKEASTIHSILKINP---VTYEENV-LFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILL 149 (459)
T ss_dssp -------SSCEEEHHHHHTEEE---EECSSCE-EEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHH
T ss_pred -------ccchhhHHHHhccCc---ccccccc-hhcc----------cccccccCCCEEEEECchhCC----HHHHHHHH
Confidence 111111110000000 0000000 1100 112335678999999999753 34555666
Q ss_pred HHCCCCCcEEEEe
Q 007879 297 RLCPKRRQTMLFS 309 (586)
Q Consensus 297 ~~~~~~~q~i~~S 309 (586)
..++...+++++.
T Consensus 150 ~~~~~~~~~~~vG 162 (459)
T 3upu_A 150 STIPPWCTIIGIG 162 (459)
T ss_dssp HHSCTTCEEEEEE
T ss_pred HhccCCCEEEEEC
Confidence 7776555555544
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.19 E-value=4.3e-06 Score=89.01 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (586)
.+++.|..++..++.++.+++.|+.|+|||.+ +..++..+...+ .++++++||...+.++.+.+. ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~g-----~~Vl~~ApT~~Aa~~L~e~~~-------~~ 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESLG-----LEVGLCAPTGKAARRLGEVTG-------RT 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHTT-----CCEEEEESSHHHHHHHHHHHT-------SC
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhcC-----CeEEEecCcHHHHHHhHhhhc-------cc
Confidence 58999999999999999999999999999976 344444444332 369999999999887655431 11
Q ss_pred EEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEE
Q 007879 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i 306 (586)
...++. .+...+ + . +... ......+++||||||+.+. ...+..++..++...+++
T Consensus 256 a~Tih~---------ll~~~~-----~--~----~~~~-~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ASTVHR---------LLGYGP-----Q--G----FRHN-HLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEEHHH---------HTTEET-----T--E----ESCS-SSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred HHHHHH---------HHcCCc-----c--h----hhhh-hcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 111110 000000 0 0 0000 1123467899999999764 345667777777666666
Q ss_pred EEe
Q 007879 307 LFS 309 (586)
Q Consensus 307 ~~S 309 (586)
++.
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.15 E-value=2.1e-05 Score=85.04 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
...+++.|..++..++.+.-.++.||+|+|||.+ +..++..+.... +.++|+++||...+.++.+.+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~~----~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG----NGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTSS----SCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHcC----CCeEEEEeCcHHHHHHHHHHHHh
Confidence 4468999999999998887889999999999986 355555555421 33699999999999998887765
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.08 E-value=7.2e-06 Score=89.18 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCC-eEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~-~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
.+.+-|.+|+..++..++ .||.||+|||||.+ +..++..+...+. ++|+++||...+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~~~-----~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQGL-----KVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHTTC-----CEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhCCC-----eEEEEcCchHHHHHHHHHHHh
Confidence 578999999999988765 57999999999987 4566666665433 699999999999998877764
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=2.6e-05 Score=86.18 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+. ..++..+.... +.++|+++||...+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~~----~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKIH----KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHHH----CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhCC----CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34578999999999988777899999999999763 44555444321 236999999999999998888764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.04 E-value=3.8e-05 Score=84.76 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~ 218 (586)
..+++.|..++..++.+.-.++.||+|+|||.+ +..++..+.... +.++|+++||...+.++.+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~~----~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG----NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTTC----SSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHH
Confidence 457899999999998887789999999999986 455555555422 23699999999999998887764
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.98 E-value=0.00041 Score=75.58 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~ 221 (586)
..+++-|.+++.. .+..++|.|+.|||||.+. +.-+.+++.... .++.++|++++|+.++.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l-~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVL-VHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHH-HHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999973 3567899999999999874 544455554322 2345799999999999999999887643
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.37 E-value=0.001 Score=66.54 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=55.3
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~ 222 (586)
.|+|+|..++..+...+-+++..+-+.|||.+....++..+... ++..+++++|++..|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS----SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 58999999998775556688999999999987655555444432 2347999999999998888877776553
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.15 E-value=0.0048 Score=66.09 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=86.8
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC--
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-- 224 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~-- 224 (586)
.|+|+|..++..+...+-+++..+-|+|||.+....++..+...+ +..++++.|++..|..+.+.+..+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~----~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~ 238 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK----DKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS----SCEEEEEESSHHHHHHHHHHHHHHHTTSCTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHHHHhChHh
Confidence 489999999987755677899999999999876554444444332 34799999999999998888887765433
Q ss_pred ceEEEE-eCCCChHHHHHHhcCCCcEEEEC--cHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCC
Q 007879 225 IRCCLV-VGGLSTKMQETALRSMPDIVVAT--PGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (586)
Q Consensus 225 ~~~~~~-~~~~~~~~~~~~~~~~~~Ili~T--p~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~ 301 (586)
+..... ..... -.+.++..|.+.+ |..+ +. .+..++|+||+|.+.+. ...+..+...+..
T Consensus 239 ~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----rG------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 239 LQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----RG------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISS 301 (592)
T ss_dssp TSCCEEEECSSE-----EEETTSCEEEEEECCHHHH----HH------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSS
T ss_pred hccccccCCccE-----EEecCCCEEEEEeCCCCCc----cC------CCcceEEEehhccCCch--hHHHHHHHHHhcc
Confidence 111101 01100 0122344444332 3322 11 14678999999987552 2334444444432
Q ss_pred --CCcEEEEeecCch
Q 007879 302 --RRQTMLFSATLTE 314 (586)
Q Consensus 302 --~~q~i~~SAT~~~ 314 (586)
..+ +++..|+..
T Consensus 302 ~~~~~-ii~isTP~~ 315 (592)
T 3cpe_A 302 GRRSK-IIITTTPNG 315 (592)
T ss_dssp SSCCE-EEEEECCCT
T ss_pred CCCce-EEEEeCCCC
Confidence 344 444445543
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.0028 Score=56.33 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHh---------cCCCeEEEcCCCchhHHH
Q 007879 149 TPIQAACIPLAL---------TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 149 ~~~Q~~~i~~il---------~g~~~lv~~~TGsGKT~~ 178 (586)
.+.|..++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 345555554443 367899999999999975
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.80 E-value=0.0044 Score=55.30 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
|+-.++.|++|+|||+.. +-++..+...+. +++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~~g~-----~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKLGKK-----KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHHTTC-----EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHHCCC-----eEEEEeecc
Confidence 555679999999999863 555555544332 688888874
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.78 E-value=0.0047 Score=62.47 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=62.0
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (586)
-.++.|+.|+|||... ...+. . . +++|++||++++..+.+.+... +.
T Consensus 163 v~~I~G~aGsGKTt~I-~~~~~----~-~-----~~lVlTpT~~aa~~l~~kl~~~----~~------------------ 209 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-LSRVN----F-E-----EDLILVPGRQAAEMIRRRANAS----GI------------------ 209 (446)
T ss_dssp EEEEEECTTSCHHHHH-HHHCC----T-T-----TCEEEESCHHHHHHHHHHHTTT----SC------------------
T ss_pred EEEEEcCCCCCHHHHH-HHHhc----c-C-----CeEEEeCCHHHHHHHHHHhhhc----Cc------------------
Confidence 3569999999999753 22221 1 1 3799999999998877666421 11
Q ss_pred cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 244 ~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
......-+.|.+.++. +.........++||||||-.+ . ...+..++...+. .+++++.-+
T Consensus 210 ~~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 210 IVATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred cccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 0001233777766554 221222235789999999854 3 3334444455443 455555443
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.70 E-value=0.0015 Score=60.16 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=52.7
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
|.-.++.|++|+|||++ ++-++.++...+. +|+++.|...- . ....+....++.
T Consensus 12 G~i~litG~mGsGKTT~-ll~~~~r~~~~g~-----kVli~~~~~d~--r---~~~~i~srlG~~--------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAE-LIRRLHRLEYADV-----KYLVFKPKIDT--R---SIRNIQSRTGTS--------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHTTC-----CEEEEEECCCG--G---GCSSCCCCCCCS---------------
T ss_pred cEEEEEECCCCCcHHHH-HHHHHHHHHhcCC-----EEEEEEeccCc--h---HHHHHHHhcCCC---------------
Confidence 45567899999999987 4666666655433 58888775421 0 000111111111
Q ss_pred HhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccccc
Q 007879 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 284 (586)
...+.+.+...++..+... ..-..+++|||||++.+.
T Consensus 66 ----~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ----LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred ----ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 0123456666777766552 223458899999999754
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.67 E-value=0.0013 Score=56.55 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=25.3
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCC-CcEEEEeecCc
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLT 313 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~-~q~i~~SAT~~ 313 (586)
.+.+++|+||.+.+.... ...+..+++.+... ..++++|+..+
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 356799999999865433 45555555543322 33355566543
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.66 E-value=0.0026 Score=57.07 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
|+=.++.|++|||||++ ++-++.++..++. +|+++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~-ll~~a~r~~~~g~-----kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEE-LIRRIRRAKIAKQ-----KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHHHTTC-----CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHCCC-----EEEEEEecc
Confidence 44467899999999976 5666666654443 589998873
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.026 Score=54.73 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
+.++++.||+|+|||.+ +-.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 45789999999999986 3555555543
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.014 Score=57.27 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999975
No 113
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.27 E-value=0.023 Score=57.59 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=71.1
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~--Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
-+++.|++|+|||++. .-+...+...+. +|+++. +.|.-+. +.+..++...++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~-~kLA~~l~~~G~-----kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTA-GKLAYFYKKRGY-----KVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQ------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHH-HHHHHHHHHTTC-----CEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCS-------
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHcCC-----eEEEEecCccchhHH---HHHHHHHHhcCCceeeccccC-------
Confidence 4668999999999863 333333333222 455544 3444332 334444444555443222111
Q ss_pred HhcCCCcEEEECcHHHH-HHHHhcCCcCccCceEEEEeCccccc---CCCcHHHHHHHHHHCCCCCcEEEEeecCchhHH
Q 007879 242 ALRSMPDIVVATPGRMI-DHLRNSMSVDLDDLAVLILDEADRLL---ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~-~~l~~~~~~~l~~~~~lViDEah~l~---~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~ 317 (586)
.|..+. ..+.. .....++++|||.+-++. +..+...+..+...+.+..-+++++|+...+..
T Consensus 163 -----------dp~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 163 -----------NPIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp -----------CHHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred -----------CHHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 122222 22222 223578899999998754 333556666777766666667888888766655
Q ss_pred HHHHHh
Q 007879 318 ELIKLS 323 (586)
Q Consensus 318 ~~~~~~ 323 (586)
..+..+
T Consensus 229 ~~a~~f 234 (433)
T 3kl4_A 229 DLASRF 234 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.26 E-value=0.0054 Score=71.50 Aligned_cols=71 Identities=28% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
++|+-|.++|..- +++++|.|..|||||.+.+--++..+..........++|+|++|+..|..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 5899999999754 8899999999999998754445555544322334557999999999999998888763
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.21 E-value=0.0076 Score=66.22 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc--C
Q 007879 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF--T 223 (586)
Q Consensus 146 ~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~--~ 223 (586)
..+++-|.+++.. ....++|.|..|||||.+. ..-+.+++... +..+.++|+|+.|+..|.++.+.+..+... .
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL-~~ri~~ll~~~-~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL-THRIAYLMAEK-HVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTT-CCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH-HHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 4689999999975 3568899999999999874 44444444432 223457999999999999999888876432 2
Q ss_pred CceEEEEe
Q 007879 224 DIRCCLVV 231 (586)
Q Consensus 224 ~~~~~~~~ 231 (586)
++.+..++
T Consensus 86 ~~~v~Tfh 93 (724)
T 1pjr_A 86 DVWISTFH 93 (724)
T ss_dssp TSEEEEHH
T ss_pred CcEEeeHH
Confidence 34454443
No 116
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.06 E-value=0.0054 Score=66.93 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc---C
Q 007879 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF---T 223 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~---~ 223 (586)
.+++-|.+++.. .+..++|.|..|||||.+. +.-+.+++... +.++.++|+|+.|+..|.++.+.+..+... .
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l-~~ri~~ll~~~-~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~ 77 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVGQTLGRKEAR 77 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHH-HHHHHHHHHHH-CCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHH-HHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHcCccccc
Confidence 478999999975 3667899999999999874 33333333321 123447999999999999999988876432 2
Q ss_pred CceEEEEeC
Q 007879 224 DIRCCLVVG 232 (586)
Q Consensus 224 ~~~~~~~~~ 232 (586)
++.+..+++
T Consensus 78 ~~~v~Tfhs 86 (673)
T 1uaa_A 78 GLMISTFHT 86 (673)
T ss_dssp TSEEEEHHH
T ss_pred CCEEEeHHH
Confidence 355554443
No 117
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.99 E-value=0.007 Score=54.79 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~ 207 (586)
|+=.++.|++|+|||+. ++-.+.++...+. +|+|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~~g~-----kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQFAKQ-----HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHTTC-----CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHCCC-----EEEEEEeccC
Confidence 33345899999999986 4666666655444 5999999763
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.83 E-value=0.013 Score=53.64 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=28.2
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
|+=.++.|++|+|||.. ++-.+.+....+. +++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~-lL~~~~r~~~~g~-----kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQY-----KCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHH-HHHHHHHHHTTTC-----CEEEEEETT
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHCCC-----eEEEEeecC
Confidence 55567899999999976 4666665554433 589988865
No 119
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.67 E-value=0.021 Score=56.31 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHh----cCC---CeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 148 PTPIQAACIPLAL----TGR---DICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 148 ~~~~Q~~~i~~il----~g~---~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
++|+|..++..+. +|+ .+++.||.|+|||..+ ..+...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHhC
Confidence 4678887776554 343 3789999999999763 444455543
No 120
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.65 E-value=0.048 Score=55.31 Aligned_cols=130 Identities=14% Similarity=0.111 Sum_probs=68.8
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~--Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
-++++|++|+|||++. ..+...+...+. +|+++. |.|.-+ .+.+..++...++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~-~kLA~~l~~~G~-----kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~------- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV-AKLARYFQKRGY-----KVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEK------- 165 (443)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHTTTC-----CEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCC-------
T ss_pred EEEEECcCCCCHHHHH-HHHHHHHHHCCC-----eEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCC-------
Confidence 4668999999999863 444444433322 455544 444443 3345555555566543222211
Q ss_pred HhcCCCcEEEECcHHHH-HHHHhcCCcCccCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCchhHHHH
Q 007879 242 ALRSMPDIVVATPGRMI-DHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~l~-~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~ 319 (586)
.|..+. ..+.. .....++++|||.+-++... .....+..+.....+..-++++.||...+....
T Consensus 166 -----------dp~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~ 231 (443)
T 3dm5_A 166 -----------DAIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ 231 (443)
T ss_dssp -----------CHHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH
T ss_pred -----------CHHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH
Confidence 122221 22221 11134788999998765422 234445555555555555777888876665555
Q ss_pred HHHh
Q 007879 320 IKLS 323 (586)
Q Consensus 320 ~~~~ 323 (586)
+..+
T Consensus 232 a~~f 235 (443)
T 3dm5_A 232 ALAF 235 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.46 E-value=0.11 Score=49.17 Aligned_cols=17 Identities=29% Similarity=0.118 Sum_probs=14.7
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
+.+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47899999999999753
No 122
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.38 E-value=0.055 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=17.7
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
+.+++.||+|+|||..+ ..+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67899999999999753 3344444
No 123
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.36 E-value=0.025 Score=60.19 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHHHhc--CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 007879 147 KPTPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (586)
Q Consensus 147 ~~~~~Q~~~i~~il~--g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~ 224 (586)
.+|.-|++++..++. ..-.++.|+-|.|||.+..+.+. .+ .. .++|.+|+..-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~-~~-------~~~vtAP~~~a~~~l~~~~~~------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RI-AG-------RAIVTAPAKASTDVLAQFAGE------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HS-SS-------CEEEECSSCCSCHHHHHHHGG------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HH-Hh-------CcEEECCCHHHHHHHHHHhhC------
Confidence 689999999998887 23467999999999965433332 22 11 369999998876644333211
Q ss_pred ceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCc
Q 007879 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (586)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q 304 (586)
.|-+..|..+.. . +...++||||||=.+. ...+..++.. ..
T Consensus 240 -----------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaIp----~pll~~ll~~----~~ 280 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAIP----APLLHQLVSR----FP 280 (671)
T ss_dssp -----------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGSC----HHHHHHHHTT----SS
T ss_pred -----------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcCC----HHHHHHHHhh----CC
Confidence 133445655331 1 2358899999999873 5566666553 33
Q ss_pred EEEEeecCc
Q 007879 305 TMLFSATLT 313 (586)
Q Consensus 305 ~i~~SAT~~ 313 (586)
.++||.|..
T Consensus 281 ~v~~~tTv~ 289 (671)
T 2zpa_A 281 RTLLTTTVQ 289 (671)
T ss_dssp EEEEEEEBS
T ss_pred eEEEEecCC
Confidence 588888875
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.36 E-value=0.078 Score=54.29 Aligned_cols=17 Identities=24% Similarity=0.042 Sum_probs=14.9
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.||+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 125
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.31 E-value=0.024 Score=51.21 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~ 207 (586)
|.=.++.|++|+|||.. ++..+.++...+. +++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~~g~-----kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIYAKQ-----KVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTTC-----CEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHHcCC-----ceEEEEeccC
Confidence 44457999999999976 4555666555433 5899998653
No 126
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.23 E-value=0.019 Score=51.06 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
|+=.++.|++|||||.- ++-++.+....+. +++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~~-----kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQY-----KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTTC-----CEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcCC-----eEEEEccc
Confidence 45567999999999964 5666666655543 58998886
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.20 E-value=0.079 Score=51.78 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=23.1
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEE
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~ 307 (586)
....+|||||+|.+........+..++...+...++|+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 36789999999998622234445555554444444444
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.15 E-value=0.17 Score=45.80 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=24.3
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
....+|||||+|.+... ....+..++...+....+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998643 2444555555555555444444
No 129
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.2 Score=49.42 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=26.2
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeec
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
...+++|+||+|. ++......+..++...+....+|+.|-.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 4678999999999 4443455666666666555544444443
No 130
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.02 E-value=0.13 Score=45.22 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+.+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 45789999999999975
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.89 E-value=0.093 Score=50.15 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=29.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH--HhcCCCeEEEcCCCchhHHH
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL--ALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~--il~g~~~lv~~~TGsGKT~~ 178 (586)
..+|.++.-.....+.+...-.. +. .....+.. +..++.+++.||+|+|||..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVEL-PL-KHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH-HH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-Hh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 34577776666666665442100 00 00111111 12356799999999999975
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.84 E-value=0.053 Score=54.29 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46799999999999975
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.80 E-value=0.036 Score=51.34 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999975
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.72 E-value=0.072 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=17.2
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 163 RDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
+.+++.||+|+|||... -.+...+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46899999999999753 3334333
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.60 E-value=0.024 Score=55.00 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.7
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999753
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.069 Score=53.32 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=30.5
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
+..+|.+.+=-....+.|... .+..|--++...+ -..+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 346788887445555555432 1112222222111 1247899999999999985
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.47 E-value=0.063 Score=52.49 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=29.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCCeEEEcCCCchhHHH
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL-----TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il-----~g~~~lv~~~TGsGKT~~ 178 (586)
..+|.++.-...+.+.+...=. .| ...|.++ ..+.+++.||+|+|||..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 4568888766666666654210 00 0111111 135689999999999975
No 138
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.45 E-value=0.14 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.+.+++.|++|+|||... -.+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 357899999999999753 3344443
No 139
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.038 Score=56.01 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=33.2
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
+..+|.+++--....+.|... .+..|.-++...++ ..+.+|+.||+|+|||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 456799998777776666542 12223223322221 246899999999999975
No 140
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.78 E-value=0.13 Score=50.95 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
.+.+|+.||+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999753
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.72 E-value=0.096 Score=52.51 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.7
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 688999999999975
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.69 E-value=0.18 Score=48.72 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=28.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCeEEEcCCCchhHHH
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-il~g~~~lv~~~TGsGKT~~ 178 (586)
..+|.++.-...+.+.+...-. .|..+....... +..++.+++.||+|+|||+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 3567777655555555543200 000000001111 12356799999999999975
No 143
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.14 Score=51.92 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=31.3
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
+..+|.+.+--..+.+.|... .+..|--++... +---+.+|+.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 346788887666666666542 111111111111 11247899999999999975
No 144
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.08 Score=53.66 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=29.6
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
+..+|.+.+--....+.+... .+..|.-++...+ --.+.+|+.||+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 445788887555555544331 1111111211111 1237899999999999985
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.43 E-value=0.54 Score=43.02 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=13.4
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999975
No 146
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.31 E-value=0.58 Score=41.52 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=35.7
Q ss_pred cCceEEEEeCcccccCCC--cHHHHHHHHHHCCCCCcEEEEeecCchhHHHHH
Q 007879 270 DDLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~--~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 320 (586)
..+++||+||+-..+..+ -...+..++...|...-+|+.+--+++.+.+.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 579999999997765444 245677777777766666666666676666554
No 147
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.30 E-value=0.27 Score=53.93 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=65.2
Q ss_pred CceEEEEeccHHHHHHHHHHH----hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCCCCCccEEEE
Q 007879 370 TSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVIN 444 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l----~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gldi~~v~~VI~ 444 (586)
+.+++|.++++..+......+ ...++++..+||+++..+|...+..+.+|..+|+|+|... ...+.+.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 578999999998877666554 4448999999999999999999999999999999999754 45678888998886
Q ss_pred eCCC
Q 007879 445 YACP 448 (586)
Q Consensus 445 ~~~p 448 (586)
-...
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 4443
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.17 E-value=0.23 Score=49.43 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
++.+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999975
No 149
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.15 E-value=0.13 Score=50.12 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=28.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCCeEEEcCCCchhHHH
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL-----TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il-----~g~~~lv~~~TGsGKT~~ 178 (586)
..+|.+++--..+.+.|...=. .|. ..|.++ ..+.+++.||+|+|||+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3567787655666555543100 000 001122 136789999999999975
No 150
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.13 Score=51.96 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=29.6
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
+..+|.+.+=-..+.+.+... .+..|--++...+ -..+.+|+.||+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 346788886555555544331 1111212221111 1246799999999999975
No 151
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.99 E-value=0.14 Score=51.38 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=30.3
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
...+|++++=-....+.|... .+..|--++...+ -..+.+|+.||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 456798886444444444321 1222322332222 1236899999999999985
No 152
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.83 E-value=0.14 Score=50.53 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=24.5
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
....+|++||+|.+... ....+..++...+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35679999999998643 2344555566555555455544
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.74 E-value=0.24 Score=49.70 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
.+.+|+.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999753
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.54 E-value=0.42 Score=49.03 Aligned_cols=39 Identities=26% Similarity=0.176 Sum_probs=24.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
.|.-+++.|++|+|||.. ++-++..+.... +.+|+++..
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~~~~----g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVATKT----NENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHHHHS----SCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHhC----CCcEEEEEC
Confidence 356678999999999975 454444443211 114777664
No 155
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.38 E-value=0.79 Score=42.77 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46789999999999975
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.11 E-value=0.33 Score=47.59 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=14.5
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
..+++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999975
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.04 E-value=0.46 Score=47.12 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=13.2
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.01 E-value=0.32 Score=44.53 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.|.-+++.||+|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 356778999999999975
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.00 E-value=0.31 Score=45.07 Aligned_cols=50 Identities=20% Similarity=0.036 Sum_probs=29.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
.|.-+++.|++|+|||... +.++..+...+. +++++.... ...++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~~~~~~~~~~~-----~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS-QQFLWNGLKMGE-----PGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH-HHHHHHHHHTTC-----CEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhcCC-----eEEEEEccC-CHHHHHHHHH
Confidence 4567789999999999753 444444433322 467765432 2344444444
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.98 E-value=0.4 Score=46.48 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=24.7
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
....+|||||+|.+... ....+..++...+....+|+ +++.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~-~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFIL-SCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEE-EESC
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEE-EeCC
Confidence 45779999999998543 23445555555554444444 4443
No 161
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.81 E-value=0.55 Score=47.40 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=65.1
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh---cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccc----ccCCCCCcc
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA----RGLDIIGVQ 440 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~Gldi~~v~ 440 (586)
..+.++||.+|++..+..+...+.. .++++..++|+.+..++......+..|..+|+|+|.-.- .-++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3467899999999999999888877 588999999999999998899999999999999997432 125566788
Q ss_pred EEEEeC
Q 007879 441 TVINYA 446 (586)
Q Consensus 441 ~VI~~~ 446 (586)
+||.=.
T Consensus 142 ~iViDE 147 (414)
T 3oiy_A 142 FVFVDD 147 (414)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 888533
No 162
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.78 E-value=0.66 Score=47.43 Aligned_cols=114 Identities=20% Similarity=0.149 Sum_probs=54.5
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceEEEEeCCCChHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCLVVGGLSTKMQE 240 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 240 (586)
|.-+++.|++|+|||.. ++-+...+.... +.+|+++..--. ..|+...+.. ......-+. ..|..+.....
T Consensus 200 G~l~ii~G~pg~GKT~l-al~ia~~~a~~~----g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~~~ 271 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAF-ALTIAQNAALKE----GVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRV--RLGQLTDRDFS 271 (444)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHHTT----CCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTC--CGGGCCHHHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHhC----CCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHH--hCCCCCHHHHH
Confidence 45678999999999965 455544444321 124777654321 2233333322 111111110 12222222111
Q ss_pred ------HHhcCCCcEEEE-----CcHHHHHHHHhcCCcCccCceEEEEeCcccccCC
Q 007879 241 ------TALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (586)
Q Consensus 241 ------~~~~~~~~Ili~-----Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 286 (586)
..+.. ..+.+. |+..+...++.. ..-..+++||||..+.+...
T Consensus 272 ~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l--~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 272 RLVDVASRLSE-APIYIDDTPDLTLMEVRARARRL--VSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHH--HHHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEcChhhcCCC
Confidence 11222 345553 344554443321 11125789999999998743
No 163
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.33 E-value=1.9 Score=38.13 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=53.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCce
Q 007879 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (586)
Q Consensus 198 ~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~ 273 (586)
++||.|+++..+..+++.+... ++.+..++|+.+...+...+ .+...|+|+| +.+.. ++++..++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~--Gldi~~v~ 124 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK--GLDFPAIQ 124 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT--TCCCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc--CCCcccCC
Confidence 6999999999999988888764 77889999998876654433 3467999999 23333 57778888
Q ss_pred EEEE
Q 007879 274 VLIL 277 (586)
Q Consensus 274 ~lVi 277 (586)
+||.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 164
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.29 E-value=0.28 Score=50.20 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=28.4
Q ss_pred cCCcccCCCCHHHHHHHHHcC-----CCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 124 ANSFMELNLSRPLLRACEALG-----YSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~-----~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
..+|.++.-...+.+.|...- +..+. + ......+.+|+.||+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~--~----~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF--T----GKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTT--S----GGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHh--h----ccCCCCceEEEECCCCCCHHHH
Confidence 456788765556665554320 11110 0 0012246799999999999975
No 165
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.90 E-value=0.97 Score=38.80 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=53.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCce
Q 007879 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (586)
Q Consensus 198 ~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~ 273 (586)
++||.++++..+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|. .+.. ++++..++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gld~~~~~ 105 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR--GIDIENIS 105 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT--TCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCchhcCC
Confidence 6999999999999988888763 78899999998876654433 34578999992 2222 57777888
Q ss_pred EEEEeC
Q 007879 274 VLILDE 279 (586)
Q Consensus 274 ~lViDE 279 (586)
+||.-.
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 166
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.79 E-value=0.93 Score=46.84 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=28.2
Q ss_pred ceEEEEeCcccccCCC----------cHHHHHHHHHHCCCCCcEEEEeecCch
Q 007879 272 LAVLILDEADRLLELG----------FSAEIHELVRLCPKRRQTMLFSATLTE 314 (586)
Q Consensus 272 ~~~lViDEah~l~~~~----------~~~~i~~i~~~~~~~~q~i~~SAT~~~ 314 (586)
..+|+|||+|.+.... ....+..++........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886421 223344455555566678888888654
No 167
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.79 E-value=0.36 Score=47.41 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=24.2
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEE
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~ 308 (586)
....++|+||+|.+... ....+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 35789999999988542 244455556665555544443
No 168
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.46 E-value=0.27 Score=50.26 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
.++++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3689999999999975
No 169
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.28 E-value=1.2 Score=38.76 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=53.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.++||.|+++..+..+++.+.. .++.+..++|+.+...+...+ .+..+|+|+|. .+ ..++++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~--~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC--ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC--CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch--hcCCCccc
Confidence 34799999999999988877765 478899999998877665433 34579999992 11 22577788
Q ss_pred ceEEEE
Q 007879 272 LAVLIL 277 (586)
Q Consensus 272 ~~~lVi 277 (586)
+.+||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 170
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.27 E-value=0.67 Score=42.67 Aligned_cols=19 Identities=26% Similarity=0.034 Sum_probs=15.5
Q ss_pred cCCCeEEEcCCCchhHHHh
Q 007879 161 TGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~ 179 (586)
.|.-+++.||+|+|||...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3566789999999999754
No 171
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.22 E-value=1.5 Score=50.44 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=62.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHh----hcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-ccccCCCCCccEEE
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQTVI 443 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~----~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gldi~~v~~VI 443 (586)
.+.+++|.|+|...+......|. ..++.+..+++..+..++...+..+..|..+|+|+|.. +...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 45689999999988877766554 34688999999999999999999999999999999954 45567788888777
Q ss_pred E
Q 007879 444 N 444 (586)
Q Consensus 444 ~ 444 (586)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.11 E-value=0.65 Score=44.72 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=23.4
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
....+++||||||.|.... ...+.+.+..-|. .-++++.++-
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~-~t~fIl~t~~ 121 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPE-YAVIVLNTRR 121 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCT-TEEEEEEESC
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCC-CeEEEEEECC
Confidence 3568999999999986432 2333344443333 3344444443
No 173
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.96 E-value=0.45 Score=46.04 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=22.7
Q ss_pred CceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEe
Q 007879 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (586)
Q Consensus 271 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~S 309 (586)
...+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999986422 233444555544444444444
No 174
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.95 E-value=0.24 Score=45.97 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=27.2
Q ss_pred cCceEEEEeCcccccC-----CCcHHHHHHHHHHCCCCCcEEEEeecCc
Q 007879 270 DDLAVLILDEADRLLE-----LGFSAEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 270 ~~~~~lViDEah~l~~-----~~~~~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
.+.+++|+||.-.+++ ......+..++..+...-.+++++.-..
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4678999999988764 3344446666655543334566665543
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.88 E-value=0.55 Score=48.24 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=14.3
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+.+++.||+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5689999999999975
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.83 E-value=0.33 Score=46.89 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=13.6
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 589999999999975
No 177
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.78 E-value=1.2 Score=45.93 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=37.9
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~ 220 (586)
.|....+.+-||||||++. ..++.. .+ ..+|||+|+...|.|+++.+..+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~---~~-----~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAER---HA-----GPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHH---SS-----SCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHH---hC-----CCEEEEeCCHHHHHHHHHHHHhhC
Confidence 3556789999999999752 222222 11 138999999999999999999764
No 178
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.65 E-value=1.2 Score=38.18 Aligned_cols=72 Identities=14% Similarity=0.304 Sum_probs=53.2
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.++++..+..++..+.. .++.+..++|+.+...+...+ .+...|+|+|. .+.. ++++..+
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--G~d~~~~ 99 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR--GIDVQQV 99 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT--TCCCCSC
T ss_pred CCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc--CCCcccC
Confidence 3699999999999988888776 377889999998876654433 34578999992 2222 5677788
Q ss_pred eEEEEeC
Q 007879 273 AVLILDE 279 (586)
Q Consensus 273 ~~lViDE 279 (586)
.+||.-.
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887643
No 179
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.29 E-value=1.2 Score=40.16 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=52.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCce
Q 007879 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (586)
Q Consensus 198 ~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~ 273 (586)
++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..+.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidi~~v~ 101 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR--GLDIPQVD 101 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC--SSSCCCBS
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc--CCCCccCc
Confidence 6999999999999888888764 77889999998877665443 34578999992 2222 57778888
Q ss_pred EEEE
Q 007879 274 VLIL 277 (586)
Q Consensus 274 ~lVi 277 (586)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8873
No 180
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.96 E-value=0.28 Score=41.30 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=17.4
Q ss_pred HHhcCCCeEEEcCCCchhHHH
Q 007879 158 LALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~ 178 (586)
.+..+.++++.|++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345578899999999999975
No 181
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.80 E-value=0.22 Score=46.30 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~ 217 (586)
|.-++++|++|+|||...+-.+.+.+...+. .++++.-.. -..++.+.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~-----~v~~~s~E~-~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE-----PGVFVTLEE-RARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC-----CEEEEESSS-CHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC-----CceeecccC-CHHHHHHHHH
Confidence 4567899999999996533333333333222 366665432 2334444443
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.62 E-value=0.32 Score=41.00 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.0
Q ss_pred HhcCCCeEEEcCCCchhHHH
Q 007879 159 ALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~ 178 (586)
...+.++++.||+|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34567899999999999975
No 183
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.58 E-value=14 Score=35.71 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=30.4
Q ss_pred cHHHHHHHHhcCCcCccCceEEEEeCcccccC---CCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 254 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLE---LGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 254 p~~l~~~l~~~~~~~l~~~~~lViDEah~l~~---~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
...++..+..... .--+|||||+|.+.. ..+...+..+....+ +. .++++++.
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEESS
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcCc
Confidence 3455555554211 234899999999864 346666666665542 33 34555553
No 184
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.46 E-value=2.6 Score=37.96 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=54.5
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCCCC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi~~ 438 (586)
+.++||.++++..+..+...+... ++.+..++|+.+...+.. .+..+..+|+|+|.-. ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999998887766544 788999999988766543 3455778999999631 23467788
Q ss_pred ccEEEEe
Q 007879 439 VQTVINY 445 (586)
Q Consensus 439 v~~VI~~ 445 (586)
+++||.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8888853
No 185
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.18 E-value=4.4 Score=39.26 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=34.9
Q ss_pred CceEEEEeCccccc-CCCcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHHHHh
Q 007879 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (586)
Q Consensus 271 ~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 323 (586)
..+++++|.+.... .......+..+.+.+.+...++++.++...++...+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678889887654 233555666666666666778888888777666655443
No 186
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.00 E-value=0.59 Score=47.01 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=13.5
Q ss_pred CCeEE--EcCCCchhHHH
Q 007879 163 RDICG--SAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv--~~~TGsGKT~~ 178 (586)
..+++ .|++|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45778 89999999975
No 187
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.90 E-value=3.2 Score=38.37 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=53.4
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c--cccCCC
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A--ARGLDI 436 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~--~~Gldi 436 (586)
..+.++||.++++..+..+.+.+.. .++.+..++|+.+...+...+ .+..+|+|+|.- + ..++++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 3456799999999988877766654 388999999998876554433 256789999953 1 245778
Q ss_pred CCccEEEE
Q 007879 437 IGVQTVIN 444 (586)
Q Consensus 437 ~~v~~VI~ 444 (586)
..+++||.
T Consensus 185 ~~~~~lVi 192 (249)
T 3ber_A 185 RALKYLVM 192 (249)
T ss_dssp TTCCEEEE
T ss_pred cccCEEEE
Confidence 88888875
No 188
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.57 E-value=1.1 Score=48.93 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=31.6
Q ss_pred ccCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 123 HANSFMELNLSRPLLRACEALG---YSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 123 ~~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
...+|.+++.-..+.+.|...= ...|..++... +...+.+|+.||+|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 3456888877777777776531 11111111100 11236799999999999975
No 189
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.31 E-value=2.9 Score=39.94 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=24.7
Q ss_pred cCceEEEEeCccccc-CCCcHHHHHHHHHHCCCCCcEEEEeecCchhH
Q 007879 270 DDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (586)
Q Consensus 270 ~~~~~lViDEah~l~-~~~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~ 316 (586)
..+++||||+.-.+. +......+..+...+.+..-++.+.++...+.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~ 226 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA 226 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHH
Confidence 467899999995443 21123344444444433333445666644333
No 190
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.93 E-value=3.9 Score=38.97 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=23.9
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCC---CCcEEEEeecCc
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPK---RRQTMLFSATLT 313 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~---~~q~i~~SAT~~ 313 (586)
.++++||+|-+-.... -...+..+...+.. ..-++++.||..
T Consensus 181 ~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp GGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred cCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 5678999996654422 23444555555432 223667767754
No 191
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.79 E-value=3.2 Score=35.88 Aligned_cols=88 Identities=11% Similarity=0.179 Sum_probs=60.5
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.|+++..+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|.- + ..++++..+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~--~~Gldi~~~ 100 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F--GRGMDIERV 100 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C--STTCCGGGC
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h--hcCcchhhC
Confidence 36999999999999988888763 78889999998876654433 346799999931 1 225677788
Q ss_pred eEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 273 AVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 273 ~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
.+||.=.. .+.....++.+-+..
T Consensus 101 ~~Vi~~d~----p~~~~~~~qr~GR~~ 123 (172)
T 1t5i_A 101 NIAFNYDM----PEDSDTYLHRVARAG 123 (172)
T ss_dssp SEEEESSC----CSSHHHHHHHHHHHT
T ss_pred CEEEEECC----CCCHHHHHHHhcccc
Confidence 88886332 234455555554443
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.56 E-value=0.72 Score=48.45 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=19.2
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|..+++.||+|+|||.. +-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 467899999999999974 44444443
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.41 E-value=0.83 Score=47.46 Aligned_cols=46 Identities=20% Similarity=0.028 Sum_probs=28.5
Q ss_pred HHHHcCCCCCcHHHHHHHHH-HhcCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 139 ACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 139 ~l~~~~~~~~~~~Q~~~i~~-il~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.+...|. +++.+...+.. +..|..+++.||||||||+. +-++..++
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl--L~aL~~~i 284 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT--LNAIMMFI 284 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH--HHHHGGGS
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 3344443 34444444444 34678899999999999974 44444444
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.34 E-value=1.6 Score=41.36 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.4
Q ss_pred HhcCCCeEEEcCCCchhHHHh
Q 007879 159 ALTGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~ 179 (586)
+..|.-+++.|++|+|||+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 456778889999999999753
No 195
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=86.08 E-value=1.8 Score=49.61 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=65.0
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh---cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCccc----ccCCCCCcc
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA----RGLDIIGVQ 440 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~----~Gldi~~v~ 440 (586)
..+.++||.+|++..+..+...|.. .++.+..+||+++..+|...+..+..|..+|+|+|.-.- .-+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3467899999999999999998887 577999999999998888999999999999999996321 125567888
Q ss_pred EEEEeC
Q 007879 441 TVINYA 446 (586)
Q Consensus 441 ~VI~~~ 446 (586)
+||.=.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 888633
No 196
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.95 E-value=0.78 Score=55.12 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=30.2
Q ss_pred HHHHhc------CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH
Q 007879 156 IPLALT------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (586)
Q Consensus 156 i~~il~------g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~ 207 (586)
+..++. ++.+++++|+|+|||..+ +.+....... +.+++++...-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA-~ala~ea~~~-----G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLT-LQVIAAAQRE-----GKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHH-HHHHHHHHTT-----TCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHH-HHHHHHHHHc-----CCcEEEEEcccc
Confidence 455555 678999999999999875 3433333332 235788776543
No 197
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.83 E-value=7.7 Score=37.11 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.2
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+-+++.+++|+|||+.
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 3466999999999975
No 198
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.71 E-value=1.4 Score=38.81 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH----hcCC
Q 007879 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSM 246 (586)
Q Consensus 171 TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 246 (586)
..+.|... ++-++.... .+.++||.|+++.-+..+.+.+.. .++.+..++|+.+...+... ..+.
T Consensus 28 ~~~~K~~~-L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNATG------KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CGGGHHHH-HHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTS
T ss_pred CcHHHHHH-HHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34567643 444444321 234699999999999988888776 37888999998765544322 2346
Q ss_pred CcEEEECcHHHHHHHHhcCCcCccCceEEEE
Q 007879 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (586)
Q Consensus 247 ~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lVi 277 (586)
..|+|+|. .+.. ++++..+.+||.
T Consensus 97 ~~vLvaT~-----~~~~--Gldi~~~~~VI~ 120 (185)
T 2jgn_A 97 SPILVATA-----VAAR--GLDISNVKHVIN 120 (185)
T ss_dssp SSEEEEEC-------------CCCSBSEEEE
T ss_pred CeEEEEcC-----hhhc--CCCcccCCEEEE
Confidence 78999993 2222 566778888776
No 199
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=85.38 E-value=2.2 Score=44.54 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=61.7
Q ss_pred CceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCCCCccEEE
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGVQTVI 443 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi~~v~~VI 443 (586)
.+.+||.++++..+......|...++.+..+|+..+..++..+...+..|..+||++|.-- ...+....+.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 4689999999999999999999999999999999999999999999999999999998521 1223334566655
Q ss_pred E
Q 007879 444 N 444 (586)
Q Consensus 444 ~ 444 (586)
.
T Consensus 145 i 145 (523)
T 1oyw_A 145 V 145 (523)
T ss_dssp E
T ss_pred E
Confidence 3
No 200
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.89 E-value=0.98 Score=45.55 Aligned_cols=35 Identities=23% Similarity=0.103 Sum_probs=21.8
Q ss_pred HHHHHHHHhc--CCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 152 QAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 152 Q~~~i~~il~--g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+..++..++. |.-+++.||||||||+. +.++..++
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl--L~allg~l 191 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT--LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH--HHHHHhhc
Confidence 4444444443 44567999999999974 44444444
No 201
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.79 E-value=1.6 Score=47.69 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=26.0
Q ss_pred CceEEEEeCcccccCC------Cc-H---HHHHHHHHHCCCCCcEEEEeecCc
Q 007879 271 DLAVLILDEADRLLEL------GF-S---AEIHELVRLCPKRRQTMLFSATLT 313 (586)
Q Consensus 271 ~~~~lViDEah~l~~~------~~-~---~~i~~i~~~~~~~~q~i~~SAT~~ 313 (586)
.-.+|+|||+|.+... +. . ..+...+..+....+++++-||-.
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~ 349 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCC
Confidence 4568999999998632 11 2 222333444455556777777754
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.77 E-value=1.6 Score=48.69 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+++++.||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 35799999999999975
No 203
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.72 E-value=2 Score=45.60 Aligned_cols=59 Identities=5% Similarity=0.061 Sum_probs=54.0
Q ss_pred CceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHH--hcCCCcEEEecC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF--RKQHVDFLIATD 428 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f--~~g~~~vLvaT~ 428 (586)
.+.+||.+|++..+......|...|+.+..++|+++..++..+...+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999998999999999999999999888888 468899999997
No 204
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.45 E-value=4.9 Score=40.14 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=54.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.++||.++++..+..+++.+.. .++.+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip~ 344 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDISN 344 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCccc
Confidence 45799999999999998888876 378899999998876654433 34678999993 3344 577888
Q ss_pred ceEEEE
Q 007879 272 LAVLIL 277 (586)
Q Consensus 272 ~~~lVi 277 (586)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 205
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.16 E-value=3.2 Score=37.71 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=52.8
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCC
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDI 436 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi 436 (586)
..+.++||.++++..+..+.+.+... ++.+..++|+.+...+...+ ...+|+|+|.-. ...+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 34568999999999998888777653 67889999998877654433 257899999632 234566
Q ss_pred CCccEEEE
Q 007879 437 IGVQTVIN 444 (586)
Q Consensus 437 ~~v~~VI~ 444 (586)
..+++||.
T Consensus 165 ~~~~~lVi 172 (230)
T 2oxc_A 165 GSIRLFIL 172 (230)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEe
Confidence 67777774
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.15 E-value=0.78 Score=44.77 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=25.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
.|.-+++.|++|+|||.. ++-++..+... +..|+|+..-
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~~-----g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALND-----DRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHHT-----TCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHc-----CCeEEEEeCC
Confidence 355678999999999975 45444444432 2357887653
No 207
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.13 E-value=7.4 Score=40.78 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=64.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.++||.|+++.-|..+++.+..... .++.+..++|+.+...+...+ .+..+|+|||. .+.. ++++..
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip~ 410 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 410 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc--CCCccc
Confidence 34799999999999999998887532 378889999998876654433 35689999993 2222 677888
Q ss_pred ceEEEEeCcccccCCCcHHHHHHHHHHCC
Q 007879 272 LAVLILDEADRLLELGFSAEIHELVRLCP 300 (586)
Q Consensus 272 ~~~lViDEah~l~~~~~~~~i~~i~~~~~ 300 (586)
+++||.-..- .+....++.+-+..+
T Consensus 411 v~~VI~~~~p----~s~~~y~Qr~GRagR 435 (563)
T 3i5x_A 411 VHEVLQIGVP----SELANYIHRIGRTAR 435 (563)
T ss_dssp CCEEEEESCC----SSTTHHHHHHTTSSC
T ss_pred CCEEEEECCC----CchhhhhhhcCcccc
Confidence 8888854432 234455555544443
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.97 E-value=1 Score=40.64 Aligned_cols=41 Identities=22% Similarity=0.037 Sum_probs=30.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 145 ~~~~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
+..-+.-|..++..+..|.-+.+.||.|||||+. +-++..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl 45 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL--AMAKAVQ 45 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH--HHHHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 3334556777888888888888999999999974 4555444
No 209
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.83 E-value=5.4 Score=35.28 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----cc-ccCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGLDII 437 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~Gldi~ 437 (586)
.+.++||.++++..+..+.+.+... ++.+..++|+.+.......+ .+..+|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999988887766543 67889999998776543322 356789999962 12 334667
Q ss_pred CccEEEE
Q 007879 438 GVQTVIN 444 (586)
Q Consensus 438 ~v~~VI~ 444 (586)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888775
No 210
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.73 E-value=1.4 Score=42.47 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=19.0
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
++++++.||+|+|||..+ ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999753 33444443
No 211
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.63 E-value=4.6 Score=36.99 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=52.9
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c-cccCCCCCc
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIGV 439 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~v 439 (586)
+.++||.++++..+..+...+.. .++.+..++|+.+...+...+. . ..+|+|+|.- + ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 56799999999988887665543 4889999999998877655443 2 4789999962 2 234577888
Q ss_pred cEEEE
Q 007879 440 QTVIN 444 (586)
Q Consensus 440 ~~VI~ 444 (586)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88875
No 212
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.55 E-value=1.1 Score=43.48 Aligned_cols=39 Identities=21% Similarity=0.024 Sum_probs=25.2
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
.|.-++++|++|+|||.. ++-+...+...+ .+++++..-
T Consensus 67 ~G~l~li~G~pG~GKTtl-~l~ia~~~a~~g-----~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF-ALKQAKNMSDND-----DVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHHHTTT-----CEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHcC-----CeEEEEECC
Confidence 356678999999999965 444444443322 357887643
No 213
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.26 E-value=0.92 Score=49.93 Aligned_cols=15 Identities=33% Similarity=0.229 Sum_probs=13.5
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.||||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 489999999999975
No 214
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.74 E-value=5.5 Score=43.92 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
++.++++||+|+|||+.
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 56799999999999974
No 215
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=82.41 E-value=2.5 Score=40.45 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=52.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCce
Q 007879 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (586)
Q Consensus 198 ~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~ 273 (586)
++||.|+++.-+..+++.+.. .++.+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..+.
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~--Gidi~~v~ 98 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR--GLDIPQVD 98 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC--STTCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc--Ccccccee
Confidence 699999999998888777764 478899999998877665443 34678999992 2222 57778888
Q ss_pred EEEE
Q 007879 274 VLIL 277 (586)
Q Consensus 274 ~lVi 277 (586)
+||.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.11 E-value=5 Score=41.08 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=21.3
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEE
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil 202 (586)
-+.+.|++|+|||+. +..+..++... ++++++.
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll~~~----~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQFEQQ----GKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHHT----TCCEEEE
T ss_pred EEEEECCCcccHHHH--HHHHHHHhhhc----CCeEEEe
Confidence 456999999999974 45555554432 2246665
No 217
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.09 E-value=6.3 Score=39.64 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=25.5
Q ss_pred cCceEEEEeCcccccCC-CcHHHHHHHHHHCCCCCcEEEEeecCchhHHHHH
Q 007879 270 DDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~i~~SAT~~~~~~~~~ 320 (586)
..++++|||=+-++... .....+..+...+.+..-++.+.|+...+....+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a 230 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHH
Confidence 35678888876554321 1223333344444344445566666544444433
No 218
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.07 E-value=1 Score=45.91 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=32.6
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~ 210 (586)
...++++.|+||||||.. +.+++..++..+ ..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~g-----~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLRG-----DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHTT-----CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHCC-----CcEEEEeCCCchhH
Confidence 457899999999999986 344555555432 36899999988854
No 219
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=81.96 E-value=1.7 Score=37.87 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHhcCC--CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 007879 149 TPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (586)
Q Consensus 149 ~~~Q~~~i~~il~g~--~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~ 212 (586)
.+-|..++..++..+ -.++.++-|++||...+.-++......+. +|.+|+|+..-+...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr-----~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGR-----EVQIIAADRRSQMNM 96 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTC-----CEEEECSTTHHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCe-----EEEEEcCchHHHHHH
Confidence 356888888887644 45689999999998754444443333333 699999998776543
No 220
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.71 E-value=4.1 Score=37.22 Aligned_cols=73 Identities=8% Similarity=0.140 Sum_probs=45.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----ccc-ccCCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~ 438 (586)
.+.++||.++++..+..+...+... ++.+..++|+..... ....+..+..+|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999998887777543 567888888765433 23445567789999994 222 3466777
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 221
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.61 E-value=1 Score=44.47 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=21.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+..|..+++.||||||||+. +.++..++
T Consensus 172 i~~G~~i~ivG~sGsGKSTl--l~~l~~~~ 199 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL--MKALMQEI 199 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH--HHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHH--HHHHHhcC
Confidence 34588999999999999974 55555443
No 222
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=81.61 E-value=17 Score=35.67 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=64.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
..++||.++++.-|..+++.+... +..+..++|+.+...+...+ .+..+|+|+|. .+. .++++..
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCccc
Confidence 458999999999999988888763 67888999998876654433 34578999993 222 3678888
Q ss_pred ceEEEEeCcccccC--CCcHHHHHHHHHHCC
Q 007879 272 LAVLILDEADRLLE--LGFSAEIHELVRLCP 300 (586)
Q Consensus 272 ~~~lViDEah~l~~--~~~~~~i~~i~~~~~ 300 (586)
+++||.-....+.. .+....++.+-+..+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR 342 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGR 342 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSC
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhcccccc
Confidence 99998765543321 123444555544443
No 223
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=81.54 E-value=1.8 Score=50.25 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=40.6
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCC------CCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRP------KRIPAIRVLILTPTRELAVQVHSMIEKI 219 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~------~~~~~~~vlil~Ptr~La~Q~~~~~~~l 219 (586)
..+|.|.-|||||.+..--++..++..+ ......++|+|+=|+..|..+.+.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999875555555554321 2234557999999999999888777653
No 224
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.50 E-value=11 Score=39.75 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=64.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.++||.|+|+.-|..+++.+..... .++.+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~--GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc--CCCccc
Confidence 34799999999999999998887532 378889999998876654433 35678999993 2222 677888
Q ss_pred ceEEEEeCcccccCCCcHHHHHHHHHHCC
Q 007879 272 LAVLILDEADRLLELGFSAEIHELVRLCP 300 (586)
Q Consensus 272 ~~~lViDEah~l~~~~~~~~i~~i~~~~~ 300 (586)
+++||.-..- +.....++.+-+..+
T Consensus 360 v~~VI~~~~p----~s~~~y~Qr~GRagR 384 (579)
T 3sqw_A 360 VHEVLQIGVP----SELANYIHRIGRTAR 384 (579)
T ss_dssp CCEEEEESCC----SSTTHHHHHHTTSSC
T ss_pred CCEEEEcCCC----CCHHHhhhhcccccc
Confidence 9988865433 234455555544443
No 225
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.12 E-value=1.1 Score=43.71 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=21.1
Q ss_pred hcCCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 160 LTGRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
..|..+++.||||||||+. +-++..++.
T Consensus 169 ~~g~~v~i~G~~GsGKTTl--l~~l~g~~~ 196 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY--IKSIMEFIP 196 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH--HHHGGGGSC
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhCCCc
Confidence 4588999999999999973 555555443
No 226
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.08 E-value=5.6 Score=40.22 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=17.1
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
.+++++++|+|||++. .-+...+..
T Consensus 102 vI~ivG~~GvGKTT~a-~~LA~~l~~ 126 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSV-GKLGKFLRE 126 (433)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 4668899999999863 444444443
No 227
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.52 E-value=4.5 Score=40.25 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=53.7
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.|+++.-|..+++.+... ++.+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..+
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidip~~ 335 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQV 335 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS--SCCCTTE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc--CCCccCC
Confidence 47999999999999988888764 67888999998876664433 34578999993 2222 6778889
Q ss_pred eEEEE
Q 007879 273 AVLIL 277 (586)
Q Consensus 273 ~~lVi 277 (586)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 228
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.75 E-value=0.75 Score=43.16 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=20.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+..|.-+++.||||||||+. +.++..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl--l~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT--IASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH--HHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH--HHHHHHhC
Confidence 34567788999999999974 44444444
No 229
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.68 E-value=4.5 Score=36.57 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=48.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc---CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCCCCc
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGV 439 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi~~v 439 (586)
.+.++||.++++..+..+...+... ++.+..++|+.+...+...+ . ...+|+|+|.-. ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999888887764 67888899887665443332 2 347899999521 345677888
Q ss_pred cEEEE
Q 007879 440 QTVIN 444 (586)
Q Consensus 440 ~~VI~ 444 (586)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88875
No 230
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.38 E-value=4.6 Score=36.76 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=49.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-----cc--cCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----AR--GLDII 437 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~--Gldi~ 437 (586)
.+.++||.++++..+..+...+... ++.+..++|+.+.......+ +..+|+|+|.-. .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3567999999999988887777654 47889999987655443332 467899999531 12 36677
Q ss_pred CccEEEE
Q 007879 438 GVQTVIN 444 (586)
Q Consensus 438 ~v~~VI~ 444 (586)
.+++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7888775
No 231
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.35 E-value=8.9 Score=37.74 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=54.4
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCCCC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi~~ 438 (586)
+.++||.|+++..+..+...+... ++.+..++|+.+...... .+..+..+|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999998887766554 789999999988766543 3455778999999532 23466778
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888885
No 232
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.13 E-value=2.3 Score=37.98 Aligned_cols=49 Identities=10% Similarity=0.094 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC----CCeEEEcCCCchhHHHhhhhhHHH
Q 007879 135 PLLRACEALGYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLER 186 (586)
Q Consensus 135 ~l~~~l~~~~~~~~~~~Q~~~i~~il~g----~~~lv~~~TGsGKT~~~~l~~l~~ 186 (586)
.+.+.|+-.|+. +... ...+..++.+ +.+++.||+|+|||.. +..++..
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~-a~ala~~ 81 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF-GMSFIHF 81 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH-HHHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH-HHHHHHH
Confidence 566666655544 3333 4445555554 2488999999999975 3444444
No 233
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=79.08 E-value=5.9 Score=43.46 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=55.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHh-------hcCCceEEEEeCCCChHHHHHHhcC---------CCcEEEECcHHHHH
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIA-------QFTDIRCCLVVGGLSTKMQETALRS---------MPDIVVATPGRMID 259 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~Ili~Tp~~l~~ 259 (586)
++++||.+|++.-+.++++.+.... ...++.+..++|+.+...+...+.. ...|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 3479999999999999888887522 2357889999999988877665533 357999993
Q ss_pred HHHhcCCcCccCceEEEE
Q 007879 260 HLRNSMSVDLDDLAVLIL 277 (586)
Q Consensus 260 ~l~~~~~~~l~~~~~lVi 277 (586)
.+.. ++++..+.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 3334 567778887763
No 234
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.69 E-value=7.4 Score=34.33 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c-cccCCCCCcc
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIGVQ 440 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~v~ 440 (586)
.+.++||.++++..+..+...+... .+.+..++|+.+...+...+. ...+|+|+|.- + ...+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3567999999999999888888765 467888998887655433332 25789999962 1 2356677888
Q ss_pred EEEE
Q 007879 441 TVIN 444 (586)
Q Consensus 441 ~VI~ 444 (586)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 235
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=78.64 E-value=6.4 Score=38.32 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=53.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~~ 306 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVND 306 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCccc
Confidence 346999999999999988888763 77889999998876654332 34578999993 2233 466778
Q ss_pred ceEEEEe
Q 007879 272 LAVLILD 278 (586)
Q Consensus 272 ~~~lViD 278 (586)
+++||.-
T Consensus 307 ~~~Vi~~ 313 (367)
T 1hv8_A 307 LNCVINY 313 (367)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 236
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=78.50 E-value=2.3 Score=43.21 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=45.9
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
.++||.||++.-|..+++.+... ++++..++|............+..+|+|+|. .+.. ++++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~--GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM--GANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTC--CTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe--eeccC-ceEEE
Confidence 46999999999999998888764 7889999996544433333345689999993 2222 56666 77776
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=78.49 E-value=1.2 Score=43.46 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHHHhcCCCeEEEcCCCchhHHH
Q 007879 155 CIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 155 ~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
+...+..++++++.||+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334455688999999999999975
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=77.98 E-value=1.2 Score=39.65 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=18.2
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|+-+++.||+|+|||.. +-++..++
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 467788999999999974 45554443
No 239
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=77.86 E-value=10 Score=40.75 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=58.9
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.|+|+..|..+.+.+... ++++..++|+.+...+...+ .+..+|+|+|. .+.. ++++..+
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~--GlDip~v 514 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE--GLDIPEV 514 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST--TCCCTTE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC--CcccCCC
Confidence 47999999999999888888763 78888899988766655442 24579999993 2222 6778899
Q ss_pred eEEEEeCccccc
Q 007879 273 AVLILDEADRLL 284 (586)
Q Consensus 273 ~~lViDEah~l~ 284 (586)
++||+=+++...
T Consensus 515 ~lVi~~d~d~~G 526 (661)
T 2d7d_A 515 SLVAILDADKEG 526 (661)
T ss_dssp EEEEETTTTCCT
T ss_pred CEEEEeCccccc
Confidence 999999988653
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.66 E-value=0.89 Score=39.79 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=15.7
Q ss_pred hcCCCeEEEcCCCchhHHH
Q 007879 160 LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~ 178 (586)
+.|+-++++||+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 241
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.81 E-value=3.1 Score=38.83 Aligned_cols=42 Identities=26% Similarity=0.181 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCCCcHHHHH-HHHHHhcCC-----CeEEEcCCCchhHHHh
Q 007879 135 PLLRACEALGYSKPTPIQAA-CIPLALTGR-----DICGSAITGSGKTAAF 179 (586)
Q Consensus 135 ~l~~~l~~~~~~~~~~~Q~~-~i~~il~g~-----~~lv~~~TGsGKT~~~ 179 (586)
++.+.|+..|+. +++.. ++..++.++ .+++.||+|+|||+.+
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 678888877876 44433 244555543 4789999999999754
No 242
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=76.67 E-value=1.7 Score=40.69 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=16.2
Q ss_pred hcCCCeEEEcCCCchhHHH
Q 007879 160 LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~ 178 (586)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3467899999999999974
No 243
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.45 E-value=6.6 Score=38.92 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=52.8
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|. .+. .++++..+
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~~ 327 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQAV 327 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTTE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccCC
Confidence 47999999999999988888764 67888999998876654332 34578999993 222 25777888
Q ss_pred eEEEE
Q 007879 273 AVLIL 277 (586)
Q Consensus 273 ~~lVi 277 (586)
.+||.
T Consensus 328 ~~Vi~ 332 (400)
T 1s2m_A 328 NVVIN 332 (400)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 244
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=76.36 E-value=5 Score=36.11 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=45.5
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCCC
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDII 437 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi~ 437 (586)
..+.++||.++++..+..+...+.. .++.+..++|+.+...+...+ ...+|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECHHHHHHHHHhCCcchh
Confidence 3456899999999998877776654 477889999987655443322 237899999632 3456677
Q ss_pred CccEEEE
Q 007879 438 GVQTVIN 444 (586)
Q Consensus 438 ~v~~VI~ 444 (586)
.+++||.
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7888775
No 245
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.05 E-value=1.3 Score=45.83 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 151 IQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 151 ~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
.-..++..+..+.++++.||+|+|||..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344556667789999999999999974
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.04 E-value=3.4 Score=49.06 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=68.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
|+-+.+.+|.|||||+. .++++....+.+. .++++.+--+|.... ++.+ |+.+
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~~g~-----~~~~i~~e~~~~~~~---~~~~----Gv~~-------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQREGK-----TCAFIDAEHALDPIY---ARKL----GVDI-------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHHTTC-----CEEEECTTSCCCHHH---HHHT----TCCG--------------
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHhcCC-----eEEEEecCCCCCHHH---HHHc----CCCH--------------
Confidence 35578999999999987 4777765554433 588888876664433 3333 3321
Q ss_pred HhcCCCcEEEECcHH---HHHHHHhcCCcCccCceEEEEeCcccccCC------------C-----cHHHHHHHHHHCCC
Q 007879 242 ALRSMPDIVVATPGR---MIDHLRNSMSVDLDDLAVLILDEADRLLEL------------G-----FSAEIHELVRLCPK 301 (586)
Q Consensus 242 ~~~~~~~Ili~Tp~~---l~~~l~~~~~~~l~~~~~lViDEah~l~~~------------~-----~~~~i~~i~~~~~~ 301 (586)
.+++++-|.. .+..+.. .+.-..+++||||.+-.+... | +...+.++...+.+
T Consensus 1484 -----~~l~~~~p~~~e~~l~~~~~--~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~ 1556 (1706)
T 3cmw_A 1484 -----DNLLCSQPDTGEQALEICDA--LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1556 (1706)
T ss_dssp -----GGCEEECCSSHHHHHHHHHH--HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHeEEeCCCcHHHHHHHHHH--HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 0255555533 2222222 112246789999999987632 1 22224444444444
Q ss_pred CCcEEEEeecCchh
Q 007879 302 RRQTMLFSATLTED 315 (586)
Q Consensus 302 ~~q~i~~SAT~~~~ 315 (586)
..-+++|...+...
T Consensus 1557 ~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1557 SNTLLIFINQIRMK 1570 (1706)
T ss_dssp HTCEEEEEECBC--
T ss_pred CCcEEEEeeccccc
Confidence 44566776666543
No 247
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=75.96 E-value=1.1 Score=44.47 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=19.4
Q ss_pred hcCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 160 LTGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
..|..+++.||||||||+. +.++..++
T Consensus 134 ~~g~~i~ivG~~GsGKTTl--l~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT--IASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHhhc
Confidence 3466788999999999974 44444444
No 248
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=75.08 E-value=4.3 Score=38.65 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
...+++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999975
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=75.05 E-value=1.2 Score=39.73 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.++.+++.|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467789999999999985
No 250
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.43 E-value=3.6 Score=40.55 Aligned_cols=18 Identities=39% Similarity=0.283 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
....+++.||+|+|||.+
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356899999999999985
No 251
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=74.36 E-value=8.2 Score=38.40 Aligned_cols=70 Identities=11% Similarity=0.257 Sum_probs=53.0
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.|+++.-+..+++.+.. .++.+..++|+.+...+...+ .+...|+|+|. .+. .++++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~v 345 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQV 345 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTTE
T ss_pred CcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCcccC
Confidence 4799999999999988888876 367888999998876654433 34678999993 222 26778888
Q ss_pred eEEEE
Q 007879 273 AVLIL 277 (586)
Q Consensus 273 ~~lVi 277 (586)
++||.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.27 E-value=1.9 Score=41.85 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=33.4
Q ss_pred HHHHHhc-----CCCeEEEcCCCchhHHHhhhhhHHHHhcCC-CCCCCeEEEEEcCcHHH-HHHHHHHHHH
Q 007879 155 CIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTREL-AVQVHSMIEK 218 (586)
Q Consensus 155 ~i~~il~-----g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~vlil~Ptr~L-a~Q~~~~~~~ 218 (586)
.+..++. |.-+++.|++|+|||... +.++..+.... .+..+.+++++.-...+ ..++.+.+..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455553 456789999999999753 44443322210 01113467877654432 3344444443
No 253
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=74.12 E-value=9.4 Score=38.52 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=52.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCceE
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~ 274 (586)
+||.|+++.-|..+++.+.. .++.+..++|+.+...+...+ .+...|+|+|. .+.. ++++.++++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r--GlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSE----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR--GLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHH----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS--SCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC--CCCcccCCE
Confidence 99999999999988888876 378899999998877665443 34579999994 2222 677888888
Q ss_pred EEE
Q 007879 275 LIL 277 (586)
Q Consensus 275 lVi 277 (586)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 254
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=74.10 E-value=1.4 Score=42.29 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=20.3
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 46778899999999997 456666665
No 255
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=74.10 E-value=1.3 Score=38.80 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457889999999999853
No 256
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=74.06 E-value=3.8 Score=41.47 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=40.6
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEEC
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVAT 253 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 253 (586)
.++||+||++.-+..+++.+... ++++..++|+...........+..+|+|+|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 36999999999999988888764 788999998743333233334568999999
No 257
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.95 E-value=1.1 Score=39.16 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.2
Q ss_pred hcCCCeEEEcCCCchhHHH
Q 007879 160 LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~ 178 (586)
..++.+++.|++|||||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3467899999999999985
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=73.70 E-value=1.3 Score=39.65 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=16.8
Q ss_pred HhcCCCeEEEcCCCchhHHH
Q 007879 159 ALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~ 178 (586)
+..|+-++++||+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44577889999999999975
No 259
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=73.64 E-value=31 Score=35.40 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=17.0
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
.+++++++|+|||+++ ..++..+..
T Consensus 103 vI~ivG~~GvGKTTl~-~kLA~~l~~ 127 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC-SKLAYYYQR 127 (504)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 4668999999999763 444444433
No 260
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=73.55 E-value=1.5 Score=43.16 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=14.8
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.+..+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345678999999999974
No 261
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=75.74 E-value=0.69 Score=40.10 Aligned_cols=70 Identities=17% Similarity=0.341 Sum_probs=48.6
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.|+++..+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|. .+.. ++++..+
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gid~~~~ 99 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR--GIDIPDV 99 (170)
Confidence 47999999999998888877753 67788889887665544333 23468999992 2222 4566667
Q ss_pred eEEEE
Q 007879 273 AVLIL 277 (586)
Q Consensus 273 ~~lVi 277 (586)
.+||.
T Consensus 100 ~~Vi~ 104 (170)
T 2yjt_D 100 SHVFN 104 (170)
Confidence 77665
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=73.39 E-value=1.3 Score=38.31 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
++-++++|++|||||++
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45578999999999985
No 263
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.85 E-value=14 Score=34.18 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=51.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----cc--cccCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VA--ARGLDII 437 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~--~~Gldi~ 437 (586)
.+.++||.++++..+..+...+.. .+..+..++|+......... +..| .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999988887776654 46788889998876654433 3334 78999994 12 2356778
Q ss_pred CccEEEE
Q 007879 438 GVQTVIN 444 (586)
Q Consensus 438 ~v~~VI~ 444 (586)
.+++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 264
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=72.69 E-value=4.9 Score=47.02 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=24.2
Q ss_pred cCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEE
Q 007879 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~ 307 (586)
++-+++|+|||-.-++..-...+.+.++...+++-+|.
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~ 1271 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEE
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45567888888877776656666666655544443333
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=72.66 E-value=1.4 Score=39.48 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.|+-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 356678999999999975
No 266
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=72.55 E-value=0.64 Score=43.99 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=25.4
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCCeEEEcCCCchhHHH
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQ-AACIPLA--LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i--l~g~~~lv~~~TGsGKT~~ 178 (586)
..+|.+++--..+.+.+...= ..|+. ..++..+ .-.+.+++.||+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 456888876666666655421 11111 1122221 1124589999999999974
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=72.37 E-value=2.1 Score=38.79 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=19.6
Q ss_pred hcCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 160 LTGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
..|+-+.+.||+|+|||+. +-++..+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL--l~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL--IKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 3577788999999999974 55555443
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=72.28 E-value=1.4 Score=37.79 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.9
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-++++|++|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999975
No 269
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.16 E-value=3.2 Score=41.43 Aligned_cols=42 Identities=31% Similarity=0.336 Sum_probs=28.5
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
.+.++++.|+||+|||... -.++..+... +.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~-~~~~~~~~~~-----~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA-KMLLLREYMQ-----GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH-HHHHHHHHTT-----TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHH-HHHHHHHHHC-----CCEEEEEeCCcCH
Confidence 5678999999999999753 3333333322 2358888887654
No 270
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.06 E-value=2.8 Score=40.18 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=19.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
|.-+.+.||+|+|||+. +..+..++..
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHHh
Confidence 45566899999999974 5556555553
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.01 E-value=1.4 Score=39.05 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
|+-+++.||||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56788999999999965
No 272
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=71.76 E-value=20 Score=38.47 Aligned_cols=91 Identities=21% Similarity=0.220 Sum_probs=63.2
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHH---hc-CCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---LR-SMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.++||.|+|+..|..+.+.+... ++.+..++|+.+...+... +. +..+|+|+|. .+. .++++..+
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~v 508 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPEV 508 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTTE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCCC
Confidence 37999999999999888888763 7788889998876665544 33 4579999982 222 26778889
Q ss_pred eEEEEeCcccccC-CCcHHHHHHHHHH
Q 007879 273 AVLILDEADRLLE-LGFSAEIHELVRL 298 (586)
Q Consensus 273 ~~lViDEah~l~~-~~~~~~i~~i~~~ 298 (586)
++||+=+++...- ......++.+-+.
T Consensus 509 ~lVI~~d~d~~G~p~s~~~~iQr~GRa 535 (664)
T 1c4o_A 509 SLVAILDADKEGFLRSERSLIQTIGRA 535 (664)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGG
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHCcc
Confidence 9999988876421 2233444444433
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=71.51 E-value=2.1 Score=37.49 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=17.2
Q ss_pred CCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 163 RDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
+-+.+.||+|+|||+. +-++..++
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHHC
T ss_pred CEEEEECCCCCCHHHH--HHHHHhhC
Confidence 4567999999999974 44444443
No 274
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.40 E-value=1.1 Score=39.41 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=15.6
Q ss_pred hcCCCeEEEcCCCchhHHH
Q 007879 160 LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~ 178 (586)
..|.-+++.|++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3466788999999999974
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=71.39 E-value=19 Score=34.17 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.6
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-+++.+++|+|||..
T Consensus 100 vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTT 114 (297)
T ss_dssp EEEEECSSCSSTTHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456889999999975
No 276
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=71.31 E-value=13 Score=34.05 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=50.7
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCCCCc
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGV 439 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi~~v 439 (586)
+.++||.++++..+..+...+.. .++.+..++|+.+.......+ ....+|+|+|.-. ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 46899999999988887766654 357888889888765543332 3467899999632 234577788
Q ss_pred cEEEE
Q 007879 440 QTVIN 444 (586)
Q Consensus 440 ~~VI~ 444 (586)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88875
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.27 E-value=1.6 Score=38.91 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=18.3
Q ss_pred hcCCCeEEEcCCCchhHHHhhhhhHHH
Q 007879 160 LTGRDICGSAITGSGKTAAFALPTLER 186 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~~~l~~l~~ 186 (586)
..|.-+++.|++|||||+. +-++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl--~~~L~~ 28 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV--RKRIFE 28 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH--HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHH
Confidence 3566778999999999974 344443
No 278
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=71.23 E-value=4.8 Score=43.32 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=46.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEE
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~l 275 (586)
+.++||.||++.-+..+++.+... ++++..++|............+..+|+|+|. .+.. .+++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcEE
Confidence 347999999999999888877753 7889999985322222222234679999993 2333 45666 6666
Q ss_pred E
Q 007879 276 I 276 (586)
Q Consensus 276 V 276 (586)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=71.11 E-value=1.8 Score=37.19 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=17.3
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLER 186 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~ 186 (586)
+..+++.|++|||||+. .-++..
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHH
Confidence 46788999999999974 444443
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.09 E-value=1.6 Score=40.71 Aligned_cols=14 Identities=36% Similarity=0.045 Sum_probs=12.5
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
++++|+||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67999999999975
No 281
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=71.07 E-value=1.7 Score=42.11 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.8
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+-++|.||||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4578999999999975
No 282
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.72 E-value=2.2 Score=41.75 Aligned_cols=50 Identities=10% Similarity=-0.014 Sum_probs=28.5
Q ss_pred HHHHhc-----CCCeEEEcCCCchhHHHhhhhhHHHHhc-CCCCCCCeEEEEEcCcH
Q 007879 156 IPLALT-----GRDICGSAITGSGKTAAFALPTLERLLY-RPKRIPAIRVLILTPTR 206 (586)
Q Consensus 156 i~~il~-----g~~~lv~~~TGsGKT~~~~l~~l~~l~~-~~~~~~~~~vlil~Ptr 206 (586)
+..++. |.-+++.|++|+|||.. ++.++..... ...+..+.+++++....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtl-a~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQL-SHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHH-HHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHH-HHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 555554 34577999999999975 3444433222 11111234678876544
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.62 E-value=2.8 Score=42.59 Aligned_cols=38 Identities=21% Similarity=0.026 Sum_probs=25.5
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
|.-+++.|++|+|||.. ++-++..+...+ .+|+++..-
T Consensus 197 G~liiIaG~pG~GKTtl-al~ia~~~a~~g-----~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF-ALKQAKNMSDND-----DVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHH-HHHHHHHHHHTT-----CEEEEECSS
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHcC-----CEEEEEECC
Confidence 45678999999999975 455554444432 258887653
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.52 E-value=2.2 Score=37.90 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=18.2
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.|.-+.+.||+|||||+. +-++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 466677999999999974 4444443
No 285
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.42 E-value=1.6 Score=41.63 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
++.+++.||+|+|||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999975
No 286
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.33 E-value=1.7 Score=41.60 Aligned_cols=15 Identities=47% Similarity=0.306 Sum_probs=12.9
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-++++||||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 367899999999975
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.27 E-value=1.8 Score=38.55 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.2
Q ss_pred hcCCCeEEEcCCCchhHHH
Q 007879 160 LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~ 178 (586)
+.|+-+++.||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677788999999999974
No 288
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=70.22 E-value=2.9 Score=40.43 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--eEEEcCCCchhHHHh
Q 007879 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~--~lv~~~TGsGKT~~~ 179 (586)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4555677876 457999999999874
No 289
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.22 E-value=2.6 Score=40.39 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
....+++.|++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467899999999999975
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=70.12 E-value=1.7 Score=41.63 Aligned_cols=15 Identities=27% Similarity=0.147 Sum_probs=13.0
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-+++.||||||||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 467899999999975
No 291
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=69.82 E-value=2.3 Score=38.09 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHhcCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 158 LALTGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.+..|.-+.+.||+|+|||+. +-++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 456788888999999999974 55555443
No 292
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=69.64 E-value=15 Score=37.01 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=59.7
Q ss_pred CCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeC--------CCChHHHHHH
Q 007879 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG--------GLSTKMQETA 242 (586)
Q Consensus 171 TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~ 242 (586)
..++|... +.-++....... .+.++||.++++..+..+.+.+... ++.+..++| +.+...+...
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~ 411 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRK---QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLI 411 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHC---TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHH
T ss_pred CCChHHHH-HHHHHHHHhccC---CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHH
Confidence 45666654 455555543211 1336999999999999888888764 788888998 5554443322
Q ss_pred h----cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEEeC
Q 007879 243 L----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (586)
Q Consensus 243 ~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDE 279 (586)
+ .+...|+|+|. .+.. ++++..+.+||+=+
T Consensus 412 ~~~F~~~~~~vLv~T~-----~~~~--Gldl~~~~~Vi~~d 445 (494)
T 1wp9_A 412 LDEFARGEFNVLVATS-----VGEE--GLDVPEVDLVVFYE 445 (494)
T ss_dssp HHHHHHTSCSEEEECG-----GGGG--GGGSTTCCEEEESS
T ss_pred HHHHhcCCceEEEECC-----cccc--CCCchhCCEEEEeC
Confidence 2 34578999992 2222 57778888888544
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.55 E-value=1.9 Score=37.77 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.3
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.+..++++|++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999985
No 294
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=69.52 E-value=2.9 Score=40.98 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 45667788764 57999999999763
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.26 E-value=2.2 Score=37.57 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.1
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 296
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=68.99 E-value=2.9 Score=40.78 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 34556677764 57999999999873
No 297
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.88 E-value=6.4 Score=49.73 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH----HHHhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACI----PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i----~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
|...+.+.+..+|+. +.+.+..-+ ..+...+.+++.||||||||.+ +.+|...+..-.+ ....+.+|-|..
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~--~~~L~~al~~l~~-~~~~~~~iNPKa 947 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTS--WEVYLEAIEQVDN-IKSEAHVMDPKA 947 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHH--HHHHHHHHTTTTT-CEEEEEEECTTT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHH--HHHHHHHHHHhhC-CCceEEEECCCC
Confidence 456677778888886 666554333 2334466788999999999986 4455555443221 233456677753
No 298
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=68.85 E-value=6 Score=40.26 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=46.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 198 ~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
++||.||++.-|.++++.+.. .++.+..+++............+..+|+|+|. .+.. ++++.. .+||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEEE
Confidence 699999999999988888765 37788888887654332332345679999993 2333 566666 6655
No 299
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.79 E-value=1.8 Score=40.27 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35689999999999975
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=68.44 E-value=2 Score=37.62 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+.-+++.|++|||||++
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45678999999999985
No 301
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=68.27 E-value=6 Score=40.82 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=19.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.+.++++.|+||||||.+ +-.++..++
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 367899999999999975 344444333
No 302
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=68.25 E-value=2.5 Score=38.31 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=18.9
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
+-.|+-+++.||.|+|||+. +-++..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL--lk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL--IQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH--HHHHhcc
Confidence 44577788999999999974 4444443
No 303
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=68.11 E-value=3.4 Score=40.38 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34556778764 57999999999763
No 304
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=68.10 E-value=3.3 Score=40.41 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 45556778764 57999999999763
No 305
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=67.96 E-value=3.4 Score=40.49 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=18.6
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34456778764 57999999999763
No 306
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=67.95 E-value=3.4 Score=40.63 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=18.9
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 45566778764 57999999999763
No 307
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=67.76 E-value=7.9 Score=36.89 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=47.5
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------c-ccCCCC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A-RGLDII 437 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~-~Gldi~ 437 (586)
+.++||.++++..+..+...+... ++.+..++|+.....+. ....+|||+|.-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999887766543 46777777765432211 3456899999642 1 357788
Q ss_pred CccEEEE
Q 007879 438 GVQTVIN 444 (586)
Q Consensus 438 ~v~~VI~ 444 (586)
.+++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8998885
No 308
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=67.69 E-value=1.9 Score=42.46 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.9
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999975
No 309
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=67.68 E-value=3.4 Score=40.46 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
++..++.|.++ +..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45666788775 57899999999773
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.68 E-value=1.8 Score=37.42 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=15.2
Q ss_pred cCCCeEEEcCCCchhHHHh
Q 007879 161 TGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~ 179 (586)
.|.-+.+.||+|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556779999999999753
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=67.64 E-value=2.1 Score=37.01 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=13.0
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-++++|++|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 367999999999975
No 312
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=67.64 E-value=3.4 Score=40.71 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 44556778764 47999999999763
No 313
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=67.57 E-value=3.5 Score=40.22 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=18.8
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 44556778764 57899999999763
No 314
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.30 E-value=2.8 Score=40.15 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=18.5
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
|.-+.+.||+|+|||+. +..+..++.
T Consensus 100 g~vi~lvG~nGsGKTTl--l~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS--LGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHH--HHHHHHHHH
Confidence 44566999999999984 455555544
No 315
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=66.95 E-value=2.2 Score=36.55 Aligned_cols=15 Identities=13% Similarity=-0.199 Sum_probs=13.0
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-+++.|++|||||++
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999985
No 316
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.78 E-value=2 Score=41.04 Aligned_cols=16 Identities=19% Similarity=-0.025 Sum_probs=13.8
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678999999999975
No 317
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=66.39 E-value=3.4 Score=41.26 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=18.6
Q ss_pred HHHHHhcCCC--eEEEcCCCchhHHHh
Q 007879 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~--~lv~~~TGsGKT~~~ 179 (586)
.+..++.|.+ ++..|+||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455677776 457999999999773
No 318
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=66.37 E-value=2 Score=39.44 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=19.2
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 30 ~Ge~~~iiG~nGsGKST--Ll~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST--MLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhcCC
Confidence 46667899999999997 455555443
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=66.37 E-value=2.5 Score=38.23 Aligned_cols=18 Identities=33% Similarity=0.052 Sum_probs=14.8
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.|.-+.+.||+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355677999999999974
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=66.29 E-value=2.6 Score=37.74 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=18.1
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
|.-+.+.||+|||||+. +-++..++.
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHHh
Confidence 44566999999999974 445554443
No 321
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=66.24 E-value=3.4 Score=40.60 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=18.9
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 45556778764 57999999999763
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.24 E-value=2.4 Score=37.66 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=17.9
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLER 186 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~ 186 (586)
.|.-+++.|++|||||+. +-++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl--~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI--AHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHH
Confidence 466788999999999974 444443
No 323
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=66.23 E-value=4.3 Score=39.18 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHH-hcC---------CCC-CCCeEEEEEcCcHHH-HHHHHHHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERL-LYR---------PKR-IPAIRVLILTPTREL-AVQVHSMIEK 218 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l-~~~---------~~~-~~~~~vlil~Ptr~L-a~Q~~~~~~~ 218 (586)
|.-+++.|++|+|||... +.++... +.. ..+ ....+++++.-...+ ..++.+.+..
T Consensus 98 g~i~~i~G~~gsGKT~la-~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM-HQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999753 4433332 111 011 111578888765432 3444444444
No 324
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.97 E-value=3.6 Score=40.60 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=18.6
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 44556678764 57999999999763
No 325
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=65.90 E-value=42 Score=34.34 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=50.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccCce
Q 007879 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (586)
Q Consensus 198 ~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~ 273 (586)
..+|++....-+..+.+.+.. .+.++..++|+.+...+...+ .+..+|+|+|+..+-. ++++.++.
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------ccccccCc
Confidence 344555556555555555554 345888999998866544322 4557899999666544 67888999
Q ss_pred EEEEeCcc
Q 007879 274 VLILDEAD 281 (586)
Q Consensus 274 ~lViDEah 281 (586)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988776
No 326
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=65.89 E-value=2.9 Score=41.82 Aligned_cols=44 Identities=9% Similarity=-0.126 Sum_probs=23.9
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
|.-+++.||+|+|||......++..+.....+..+.+++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 45577999999999975322222322211111123457777543
No 327
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=65.88 E-value=4.1 Score=39.46 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 154 ACIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 154 ~~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
..+..++.|.++ +..|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 356677888774 57999999999763
No 328
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.83 E-value=23 Score=34.70 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cccCCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~Gldi~~ 438 (586)
.+.++||.|+++..+..+...+.. .++.+..++|+.+.......+. ..+|+|+|.-. ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999988877766543 4788999999988776555443 46799999532 23455677
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 329
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=65.77 E-value=17 Score=39.75 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=52.8
Q ss_pred ccCCceEEEEeccHHHHHHHHHHH----hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-c-----------
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-A----------- 430 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l----~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~----------- 430 (586)
...+.+++|.++|+..|.+.+..+ ...|++++.+.|+++...|.... ..+|+++|+- +
T Consensus 121 aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~ 194 (844)
T 1tf5_A 121 ALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVL 194 (844)
T ss_dssp HTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhc
Confidence 344678999999999988776655 44589999999999987665442 3689999962 1
Q ss_pred -cccCCCCCccEEEE
Q 007879 431 -ARGLDIIGVQTVIN 444 (586)
Q Consensus 431 -~~Gldi~~v~~VI~ 444 (586)
...+...+++++|.
T Consensus 195 ~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 195 YKEQMVQRPLHFAVI 209 (844)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred chhhhcccCCCEEEE
Confidence 12366678888764
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=65.73 E-value=1.8 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
|..+++.|++|||||+.
T Consensus 4 g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45678999999999985
No 331
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=65.64 E-value=4 Score=40.00 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=19.1
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
++..++.|.++ +..|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45566778775 47899999999763
No 332
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.59 E-value=4 Score=40.09 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 44556778764 57999999999873
No 333
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=65.56 E-value=3.3 Score=38.38 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=16.8
Q ss_pred hcCCCeEEEcCCCchhHHH
Q 007879 160 LTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 160 l~g~~~lv~~~TGsGKT~~ 178 (586)
+.|+.+++.|++|||||++
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3488999999999999985
No 334
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.26 E-value=3.7 Score=40.98 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 56677888775 47899999999874
No 335
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=65.24 E-value=9.4 Score=40.76 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=48.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEE
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~l 275 (586)
+.++||.+|++.-+.++++.+.. .++.+..++|+.+...+ .+.+.+|+|+|. .+.. .+++. +++|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~V 460 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDSV 460 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcEE
Confidence 45899999999999988888775 37889999999876642 245569999993 3334 34454 7766
Q ss_pred E
Q 007879 276 I 276 (586)
Q Consensus 276 V 276 (586)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 336
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.11 E-value=3.4 Score=36.00 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=16.2
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.+.+.||+|+|||+. +-++..++
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 367899999999974 44444433
No 337
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.02 E-value=3.7 Score=34.49 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=16.0
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHh
Q 007879 165 ICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.++.||+|+|||.. +-++..++
T Consensus 26 ~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
Confidence 57999999999974 44444444
No 338
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=64.99 E-value=4.1 Score=39.87 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 45556778764 57999999999763
No 339
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=64.98 E-value=2.2 Score=36.84 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
|..+++.|++|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999975
No 340
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=64.84 E-value=2.7 Score=40.53 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=13.2
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.++++||||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 341
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=64.81 E-value=3.4 Score=40.94 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=17.9
Q ss_pred HHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 156 IPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 156 i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
+..++.|.++ +..|+||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3456678764 47999999999763
No 342
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=64.79 E-value=3.5 Score=47.70 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=25.0
Q ss_pred ceEEEEeccH-HHHHHHHHHHhhcCCceEEecC
Q 007879 371 SKVIIFSGTK-QAAHRLKILFGLAALKAAELHG 402 (586)
Q Consensus 371 ~~~lIF~~s~-~~~~~l~~~l~~~~~~~~~l~~ 402 (586)
+.+.|.|++. ..+..+...|...++++....+
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 4588888887 4778888999888988776554
No 343
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=64.77 E-value=3.9 Score=35.42 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=16.5
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
-.++.|++|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 457999999999974 44554444
No 344
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=64.47 E-value=3.8 Score=40.50 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHhcCCC--eEEEcCCCchhHHHh
Q 007879 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~--~lv~~~TGsGKT~~~ 179 (586)
.+..++.|.+ ++..|+||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4455677876 457999999999773
No 345
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=64.42 E-value=4.3 Score=41.00 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=18.7
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
++..++.|.++ +..|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 44556778764 57999999999763
No 346
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=64.31 E-value=2.8 Score=41.48 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
..++++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999975
No 347
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=64.16 E-value=1.8 Score=40.58 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45689999999999975
No 348
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=64.14 E-value=2.6 Score=40.93 Aligned_cols=15 Identities=40% Similarity=0.195 Sum_probs=13.0
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-++|+||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 467999999999975
No 349
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.06 E-value=6.3 Score=49.23 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHH----HHHhcCCCeEEEcCCCchhHHHh
Q 007879 132 LSRPLLRACEALGYSKPTPIQAACI----PLALTGRDICGSAITGSGKTAAF 179 (586)
Q Consensus 132 l~~~l~~~l~~~~~~~~~~~Q~~~i----~~il~g~~~lv~~~TGsGKT~~~ 179 (586)
+...+.+.+...|+. +.+.+..-+ ..+...+.+++.||||||||.++
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 445677777888886 666553322 33445778999999999999864
No 350
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.90 E-value=4 Score=40.81 Aligned_cols=26 Identities=42% Similarity=0.487 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 154 ACIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 154 ~~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
..+..++.|.++ +..|+||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 367777888775 47899999999773
No 351
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=63.77 E-value=4.2 Score=35.79 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=26.1
Q ss_pred ccCceEEEEeCccccc--CCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 269 LDDLAVLILDEADRLL--ELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 269 l~~~~~lViDEah~l~--~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
....+++|+||+..+- +..|...+..++.. ...+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4667899999988774 33466666666553 33345546675
No 352
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=63.73 E-value=3.8 Score=36.66 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHHhcCCCeEEEcCCCchhHHH
Q 007879 148 PTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 148 ~~~~Q~~~i~~il~g~~~lv~~~TGsGKT~~ 178 (586)
.++.+... ..+..|.-+++.|++|||||+.
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 34455544 3344567788999999999975
No 353
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=63.67 E-value=2.3 Score=40.76 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=19.5
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+. +-++..++
T Consensus 79 ~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 467788999999999973 55555544
No 354
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=63.49 E-value=4.4 Score=39.99 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=19.4
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 55667788764 57899999999763
No 355
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=63.40 E-value=13 Score=38.74 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHH
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (586)
+..|.-+++.|++|+|||. ++-.+......... +++++++..... |+...+..+.-.
T Consensus 278 i~~G~i~~i~G~~GsGKST--Ll~~l~g~~~~~G~----~vi~~~~ee~~~-~l~~~~~~~g~~---------------- 334 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTL--LVSRFVENACANKE----RAILFAYEESRA-QLLRNAYSWGMD---------------- 334 (525)
T ss_dssp EESSCEEEEEECTTSSHHH--HHHHHHHHHHTTTC----CEEEEESSSCHH-HHHHHHHTTSCC----------------
T ss_pred CCCCcEEEEEeCCCCCHHH--HHHHHHHHHHhCCC----CEEEEEEeCCHH-HHHHHHHHcCCC----------------
Q ss_pred HHHHhcCCCcEEE-------ECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCC-----cHHHHHHHHHHCCCCCcEE
Q 007879 239 QETALRSMPDIVV-------ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FSAEIHELVRLCPKRRQTM 306 (586)
Q Consensus 239 ~~~~~~~~~~Ili-------~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~-----~~~~i~~i~~~~~~~~q~i 306 (586)
...+.....+-+ .+.+.....+.. .....+.++||+| -=.-++.. ....+..+++.+...-.++
T Consensus 335 -~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a--~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv 410 (525)
T 1tf7_A 335 -FEEMERQNLLKIVCAYPESAGLEDHLQIIKS--EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG 410 (525)
T ss_dssp -HHHHHHTTSEEECCCCGGGSCHHHHHHHHHH--HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred -HHHHHhCCCEEEEEeccccCCHHHHHHHHHH--HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE
Q ss_pred EEee
Q 007879 307 LFSA 310 (586)
Q Consensus 307 ~~SA 310 (586)
+++.
T Consensus 411 ilvs 414 (525)
T 1tf7_A 411 LFTN 414 (525)
T ss_dssp EEEE
T ss_pred EEEE
No 356
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=63.16 E-value=3.7 Score=40.37 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.6
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 56677788764 47899999999763
No 357
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=63.10 E-value=4 Score=39.92 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 66777888765 47899999999874
No 358
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=63.09 E-value=2.7 Score=38.96 Aligned_cols=59 Identities=8% Similarity=-0.035 Sum_probs=31.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
..+|.++.-.+.....+...-.. .. ...++..+- -.+.+++.||+|+|||.. +-++...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl--~~~i~~~ 72 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL--ARAVAGE 72 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHH--HHHHHHH
Confidence 45677776666655555442110 00 011222211 124589999999999974 4444443
No 359
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=62.81 E-value=8.6 Score=40.12 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
..+++|.|.||||||.+ +-.++..++.... ....+++++=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl~~~s-P~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSILFKST-PSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHHTTCC-TTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHHHhCC-CcceEEEEeCCCh
Confidence 46799999999999975 4455555543321 1234666666654
No 360
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=62.55 E-value=3 Score=37.03 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.0
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
.-++++|++|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678999999999985
No 361
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.54 E-value=3.8 Score=40.25 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=18.3
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
|.-+.+.||+|+|||+. +..+..++.
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhcc
Confidence 33466999999999984 455555544
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.39 E-value=7.4 Score=33.48 Aligned_cols=24 Identities=17% Similarity=-0.049 Sum_probs=16.5
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
+.+.|+.|||||.. +..++..+..
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l~~ 30 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAAVR 30 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHhhHh
Confidence 56899999999974 3444444433
No 363
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=62.31 E-value=6.6 Score=35.61 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=19.0
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
++++.++.|+|||.+. +.+...+...
T Consensus 8 ~I~~~~kgGvGKTt~a-~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM-LQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHH-HHHHHHHHHC
Confidence 5789999999999874 5555555444
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=62.24 E-value=3.2 Score=36.40 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=15.3
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.+.-+++.|++|||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999985
No 365
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=62.18 E-value=5.8 Score=37.65 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.3
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.|.-+++.|++|+|||..
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 466778999999999975
No 366
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.15 E-value=3.1 Score=42.47 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=15.4
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
++++|+.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 467999999999999753
No 367
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.02 E-value=4.3 Score=39.64 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=19.4
Q ss_pred HHHHHhcCCCe--EEEcCCCchhHHHh
Q 007879 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (586)
Q Consensus 155 ~i~~il~g~~~--lv~~~TGsGKT~~~ 179 (586)
.+..++.|.++ +..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 55666778764 57999999999774
No 368
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=61.96 E-value=3.8 Score=40.79 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=15.2
Q ss_pred eEEEcCCCchhHHHhhhhhHHH
Q 007879 165 ICGSAITGSGKTAAFALPTLER 186 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~ 186 (586)
++|.||||+|||..+ ..+...
T Consensus 5 i~i~GptgsGKttla-~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS-IQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHHHH-HHHHHH
T ss_pred EEEECcchhhHHHHH-HHHHHH
Confidence 579999999999753 444443
No 369
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=61.91 E-value=3.4 Score=39.45 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=13.6
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.||+|+|||..
T Consensus 49 ~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 49 SFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEESCSSSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 689999999999975
No 370
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=61.89 E-value=3.5 Score=38.67 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=19.2
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 36 ~Ge~~~liG~nGsGKST--Ll~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST--LLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHH--HHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhcCC
Confidence 36667799999999997 455555544
No 371
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=61.84 E-value=3 Score=41.04 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+.+++.||+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 372
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.84 E-value=3.2 Score=36.35 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.9
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-+++.||+|+|||+.
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999999975
No 373
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=61.75 E-value=6.3 Score=38.56 Aligned_cols=38 Identities=24% Similarity=0.118 Sum_probs=24.9
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Pt 205 (586)
|.-+++.|++|+|||.. ++.++..+...+ .+++++.-.
T Consensus 61 G~iv~I~G~pGsGKTtL-al~la~~~~~~g-----~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTV-ALHAVANAQAAG-----GIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHTT-----CCEEEEESS
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHhCC-----CeEEEEECC
Confidence 56678999999999975 455554444332 247776543
No 374
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=61.74 E-value=20 Score=39.40 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=52.2
Q ss_pred ccCCceEEEEeccHHHHHHHHHHH----hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------c-----
Q 007879 367 KTFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A----- 431 (586)
Q Consensus 367 ~~~~~~~lIF~~s~~~~~~l~~~l----~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~----- 431 (586)
...+.+++|.++|+..|.+.+..+ ...|++++++.|+++...|.... ..+|+++|+-- .
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~ 222 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAH 222 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhc
Confidence 344678999999999887766655 45689999999999987665443 36899999621 1
Q ss_pred --ccCCCCCccEEEE
Q 007879 432 --RGLDIIGVQTVIN 444 (586)
Q Consensus 432 --~Gldi~~v~~VI~ 444 (586)
..+...+++++|.
T Consensus 223 ~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 223 SLDDLVQRGHHYAIV 237 (922)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred cHhhhccCCCCEEEE
Confidence 1356677777763
No 375
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=61.73 E-value=2.9 Score=40.24 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
...+++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999975
No 376
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.67 E-value=3.1 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.1
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+.-++++|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999985
No 377
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=61.61 E-value=6.5 Score=38.54 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=25.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcC
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~P 204 (586)
.|+-+++.|++|+|||..+ +.++..+...+. +|+++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~~~~g~-----~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAAQREGK-----TCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHHHTTC-----CEEEEES
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHCCC-----eEEEEeC
Confidence 3566789999999999764 555544443322 4777765
No 378
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=61.61 E-value=23 Score=38.60 Aligned_cols=71 Identities=11% Similarity=-0.037 Sum_probs=51.2
Q ss_pred cCCceEEEEeccHHHHHHHHHHH----hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc------cc-----
Q 007879 368 TFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------AR----- 432 (586)
Q Consensus 368 ~~~~~~lIF~~s~~~~~~l~~~l----~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~------~~----- 432 (586)
..+.+++|.++|+..|.+.+..+ ...|++++.+.|+++...|.... ..+|+|+|+-- ..
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 34668999999999887776655 45589999999999976554432 37899999632 12
Q ss_pred --cCCCCCccEEEE
Q 007879 433 --GLDIIGVQTVIN 444 (586)
Q Consensus 433 --Gldi~~v~~VI~ 444 (586)
.+...++.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 245577777774
No 379
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=61.37 E-value=13 Score=39.60 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=47.0
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
.++||.|+++.-|..+++.+... ++++..++|............+..+|+|+|. .+.. .+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEEE
Confidence 36999999999999988888763 7788888886433322333345689999994 3333 45554 66653
No 380
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=61.15 E-value=3.8 Score=36.28 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=18.3
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+++.|++|||||+. .-++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl--~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL--ACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 456677999999999975 34444433
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.10 E-value=3.6 Score=35.45 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.8
Q ss_pred CeEEEcCCCchhHHHh
Q 007879 164 DICGSAITGSGKTAAF 179 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~ 179 (586)
.+++.|++|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999753
No 382
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=61.02 E-value=3.3 Score=35.26 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=19.4
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|+|||. ++-++..++
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 45566799999999997 466666655
No 383
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=60.92 E-value=2.9 Score=36.99 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.1
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.|.-+++.|+.|||||++
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356678999999999985
No 384
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=60.89 E-value=8.4 Score=41.64 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=62.7
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHH--hhcCCceEEEEeCC--------CChHHHHHHh---c-CCCcEEEECcHHHHHHHH
Q 007879 197 IRVLILTPTRELAVQVHSMIEKI--AQFTDIRCCLVVGG--------LSTKMQETAL---R-SMPDIVVATPGRMIDHLR 262 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l--~~~~~~~~~~~~~~--------~~~~~~~~~~---~-~~~~Ili~Tp~~l~~~l~ 262 (586)
.++||.++++..+..+.+.+... ....++++..++|+ .+...+...+ . +..+|+|+|. .+
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~- 474 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA- 474 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC-
T ss_pred CcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc-
Confidence 47999999999999998888753 11236888899998 7766554433 2 3578999993 12
Q ss_pred hcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 263 NSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 263 ~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
..++++..+.+||.=. +.++....++.+-+.-.....+++++..-
T Consensus 475 -~~GIDip~v~~VI~~d----~p~s~~~~~Qr~GRArr~g~~~~l~~~~~ 519 (699)
T 4gl2_A 475 -EEGLDIKECNIVIRYG----LVTNEIAMVQARGRARADESTYVLVAHSG 519 (699)
T ss_dssp -CTTSCCCSCCCCEEES----CCCCHHHHHHHHTTSCSSSCEEEEEEESS
T ss_pred -ccCCccccCCEEEEeC----CCCCHHHHHHHcCCCCCCCceEEEEEeCC
Confidence 2357788888887322 33455555555555333334455555543
No 385
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=60.85 E-value=4.6 Score=39.60 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=15.3
Q ss_pred cCCC--eEEEcCCCchhHHHh
Q 007879 161 TGRD--ICGSAITGSGKTAAF 179 (586)
Q Consensus 161 ~g~~--~lv~~~TGsGKT~~~ 179 (586)
.|.+ ++..|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 578999999999763
No 386
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.72 E-value=3.2 Score=39.44 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.5
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
.-++++|++|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3477999999999975
No 387
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=60.63 E-value=4.3 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.179 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
..++++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999975
No 388
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=60.50 E-value=3.4 Score=37.30 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=25.9
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEEEee
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~~SA 310 (586)
+.+.+++++||--.-++......+..++..+.....+++++.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivt 190 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 455678888888887777766666666554432223455443
No 389
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=60.28 E-value=6 Score=38.77 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~ 207 (586)
|.-+++.||+|+|||.. ++.++..+.... .+|+++.....
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~~g-----g~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQKMG-----GVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHHTT-----CCEEEEESSCC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHhcC-----CeEEEEecccc
Confidence 45677999999999975 455555544322 24777765443
No 390
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=60.19 E-value=3 Score=38.01 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=13.3
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLE 185 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~ 185 (586)
.|.-+.+.||+|||||+. +-++.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl--~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV--ANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CH--HHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHH
Confidence 466677999999999974 44444
No 391
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=60.17 E-value=2.9 Score=39.39 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=19.0
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 33 ~Ge~~~iiGpnGsGKST--Ll~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST--LFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHcCC
Confidence 36667899999999997 355555443
No 392
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=60.10 E-value=3 Score=38.58 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=19.2
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 34 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST--LTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 46677899999999997 355555443
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.02 E-value=4.2 Score=35.34 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.2
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
..+++.|++|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999853
No 394
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.90 E-value=18 Score=34.44 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=47.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHh----cCCCcEEEECcHHHHHHHHhcCCcCccC
Q 007879 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (586)
Q Consensus 196 ~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~l~~~~~~~l~~ 271 (586)
+.++||.++++.-+..+++.+. .+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~~ 284 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASR--GLDIPL 284 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHT--TCCCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cccc--CCCccC
Confidence 3469999999998877655443 467788888766654333 34579999993 3344 577888
Q ss_pred ceEEEEe
Q 007879 272 LAVLILD 278 (586)
Q Consensus 272 ~~~lViD 278 (586)
+++||.-
T Consensus 285 ~~~Vi~~ 291 (337)
T 2z0m_A 285 VEKVINF 291 (337)
T ss_dssp BSEEEES
T ss_pred CCEEEEe
Confidence 8888863
No 395
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=59.78 E-value=3.5 Score=35.22 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.6
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
+++++.|+.|||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56889999999999863
No 396
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.69 E-value=4.2 Score=36.25 Aligned_cols=24 Identities=33% Similarity=0.147 Sum_probs=16.9
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
|.-+.+.|++|||||+. +-++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHH
Confidence 34466999999999974 4445444
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.67 E-value=3.6 Score=35.98 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.1
Q ss_pred CCeEEEcCCCchhHHHh
Q 007879 163 RDICGSAITGSGKTAAF 179 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~~ 179 (586)
.-+++.|++|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999853
No 398
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.42 E-value=13 Score=35.79 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=17.2
Q ss_pred eEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 165 ICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
+.+.||+|||||+. +-++..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 45899999999974 555666654
No 399
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=59.40 E-value=4.5 Score=35.94 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=22.7
Q ss_pred ceEEEEeCcccccCC---Cc--HHHHHHHHHHCCCCCcEEEEeec
Q 007879 272 LAVLILDEADRLLEL---GF--SAEIHELVRLCPKRRQTMLFSAT 311 (586)
Q Consensus 272 ~~~lViDEah~l~~~---~~--~~~i~~i~~~~~~~~q~i~~SAT 311 (586)
-.+|||||||.+... +. ...+..+........++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 568999999998432 11 12222222223345577777766
No 400
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=59.21 E-value=9.5 Score=34.11 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc--------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----cc-ccC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGL 434 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~--------~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~Gl 434 (586)
.+.++||.++++..+..+.+.+... ++.+..++|+.+....... + .+..+|+|+|.- +. ..+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999988877766433 6788888988754432111 1 235689999952 22 235
Q ss_pred CCCCccEEEE
Q 007879 435 DIIGVQTVIN 444 (586)
Q Consensus 435 di~~v~~VI~ 444 (586)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5667777774
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.19 E-value=4.4 Score=38.12 Aligned_cols=59 Identities=8% Similarity=-0.035 Sum_probs=31.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 124 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~il--~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
..+|.++.-.+.+...+...-.. .. ...++..+- -.+.+++.||+|+|||.. +-++...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl--~~~i~~~ 96 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL--ARAVAGE 96 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHH--HHHHHHH
Confidence 35577776666666655542110 00 011222111 124589999999999974 4444443
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=59.17 E-value=5.8 Score=38.21 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=12.4
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+++.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57999999999974
No 403
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=59.11 E-value=3.6 Score=35.93 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=13.0
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-+++.|++|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999975
No 404
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=59.10 E-value=3 Score=38.46 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.1
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 27 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST--IFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 35667899999999997 355555444
No 405
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.85 E-value=44 Score=25.56 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=68.7
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcccccC-------CCCCccEEEEe
Q 007879 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL-------DIIGVQTVINY 445 (586)
Q Consensus 373 ~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl-------di~~v~~VI~~ 445 (586)
.+||.+.......+...++..|..+..+++......|..-++.|.....++--..+.-.-.- -.|.++.|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 56788888888888888999999999999999999999999999876555433322211000 12555665554
Q ss_pred CCCC--ChhHHHHHh-hhcccCCCcceEEEEeccCcHHHHHHHHHHh
Q 007879 446 ACPR--DLTSYVHRV-GRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (586)
Q Consensus 446 ~~p~--s~~~y~Qr~-GR~gR~g~~g~~~~l~~~~d~~~~~~i~~~~ 489 (586)
.... -..+|+.-+ .| | -.+++.|...+....+..+..+
T Consensus 85 ttddkewikdfieeaker----g--vevfvvynnkdddrrkeaqqef 125 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKER----G--VEVFVVYNNKDDDRRKEAQQEF 125 (162)
T ss_dssp ECCCHHHHHHHHHHHHHT----T--CEEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHhc----C--cEEEEEecCCCchhHHHHHHHh
Confidence 3221 123444332 22 2 2356666666655555555443
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=58.66 E-value=3.9 Score=36.87 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.|++|||||+.
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45678999999999985
No 407
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=58.59 E-value=39 Score=37.23 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=44.6
Q ss_pred hccCCceEEEEeccHHHHHHHHHHH----hhcCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc
Q 007879 366 SKTFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (586)
Q Consensus 366 ~~~~~~~~lIF~~s~~~~~~l~~~l----~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 429 (586)
....+.+++|.++|...|.+.+..+ ...|++++.+.|+++...|.... .++|+++|+.
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 3345678999999998887766554 45699999999999977666554 3799999964
No 408
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=58.59 E-value=3.7 Score=36.78 Aligned_cols=18 Identities=28% Similarity=0.012 Sum_probs=14.9
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
|.-+++.|++|+|||..+
T Consensus 20 G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456789999999999753
No 409
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.57 E-value=4.4 Score=39.34 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.3
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5789999999999975
No 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=58.55 E-value=3.2 Score=37.75 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=18.7
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|||||+ ++-++..+.
T Consensus 29 ~Ge~~~iiG~nGsGKST--Ll~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST--LLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36667799999999997 355555443
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=58.54 E-value=4.4 Score=36.58 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
...+++.|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35688999999999985
No 412
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=58.45 E-value=3.1 Score=36.90 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.8
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
..+++.|++|||||+.
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999985
No 413
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=58.37 E-value=3.4 Score=37.75 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=19.0
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|||||+ ++-++..++
T Consensus 33 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS--LLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 46677899999999997 355554443
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=58.32 E-value=3.8 Score=37.15 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.|++|||||++
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35678999999999985
No 415
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.24 E-value=4.2 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.+.-+++.|++|||||+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355678999999999975
No 416
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=58.12 E-value=4 Score=36.59 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.1
Q ss_pred eEEEcCCCchhHHHh
Q 007879 165 ICGSAITGSGKTAAF 179 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~ 179 (586)
+++.|++|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 679999999999853
No 417
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=57.95 E-value=4.5 Score=34.62 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.7
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
+.+++.|++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999985
No 418
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=57.81 E-value=3.5 Score=38.52 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=18.9
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|||||+ ++-++..+.
T Consensus 31 ~Ge~~~liG~nGsGKST--Llk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST--FLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 35667799999999997 355555443
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=57.78 E-value=4 Score=35.29 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=16.4
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
-+.+.|++|||||+. +-++..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 356889999999974 444444443
No 420
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=57.68 E-value=8.4 Score=29.54 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~ 404 (586)
...+++|||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 357899999998889999999999999998998875
No 421
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.35 E-value=5.3 Score=39.46 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=15.6
Q ss_pred CeEEEcCCCchhHHHhhhhhHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLER 186 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~ 186 (586)
-.++.|+||+|||.. +=++..
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 357999999999974 444444
No 422
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=57.35 E-value=8.3 Score=30.13 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~ 405 (586)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999988899999999999999999999763
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=57.33 E-value=3.6 Score=38.63 Aligned_cols=42 Identities=26% Similarity=0.424 Sum_probs=27.0
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCC-CCcEEEEee
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSA 310 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~-~~q~i~~SA 310 (586)
+.+.+++++||--.-++......+..++..+.. ...+++++.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 345678888888887776666777777766643 233555543
No 424
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=57.30 E-value=5.6 Score=36.39 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=48.5
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----cc---ccCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA---RGLDI 436 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~---~Gldi 436 (586)
.+.++||.++++..+..+...+... ++.+..++|+.....+ ......+..+|+|+|.- +. .++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999998887777654 6777777764322111 11222456789999942 11 25788
Q ss_pred CCccEEEEe
Q 007879 437 IGVQTVINY 445 (586)
Q Consensus 437 ~~v~~VI~~ 445 (586)
.++++||.-
T Consensus 174 ~~~~~lViD 182 (245)
T 3dkp_A 174 ASVEWLVVD 182 (245)
T ss_dssp TTCCEEEES
T ss_pred ccCcEEEEe
Confidence 889888753
No 425
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=57.16 E-value=4.4 Score=37.71 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=19.1
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 32 ~Ge~~~liG~nGsGKST--Llk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST--LINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 46667799999999997 455555443
No 426
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=57.14 E-value=3.6 Score=36.63 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+.-+++.|+.|||||+.
T Consensus 4 ~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45578999999999985
No 427
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=57.12 E-value=3.7 Score=35.51 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=17.3
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
|..+++.|++|||||++ .-++...
T Consensus 5 g~~i~l~G~~GsGKST~--~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTV--SMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHH
Confidence 55677999999999975 3444443
No 428
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=57.04 E-value=5.2 Score=39.14 Aligned_cols=17 Identities=29% Similarity=0.007 Sum_probs=14.1
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
|.-+.+.||+|+|||..
T Consensus 131 G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQL 147 (349)
T ss_dssp SEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45567999999999975
No 429
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=57.03 E-value=8.4 Score=37.89 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=25.8
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcH
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr 206 (586)
|.-+++.|++|+|||.. ++.++..+...+. +|+++..-.
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~g~-----~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKAGG-----TCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHTTC-----CEEEEESSC
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHCCC-----eEEEEECCC
Confidence 45678999999999975 4555555544322 477766543
No 430
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=57.02 E-value=28 Score=37.59 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=51.7
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhc--------------------------------CCceEEEEeCCCChHHHHHHh-
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQF--------------------------------TDIRCCLVVGGLSTKMQETAL- 243 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~- 243 (586)
.++||.+|++.-+..+++.+...... ....+..++|+.+...+....
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 36999999999999888888764221 013478899999877665443
Q ss_pred ---cCCCcEEEECcHHHHHHHHhcCCcCccCceEEEE
Q 007879 244 ---RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (586)
Q Consensus 244 ---~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lVi 277 (586)
.+...|+|+|. .+.. ++++..+.+||-
T Consensus 333 ~f~~g~~~vlvaT~-----~l~~--Gidip~~~~VI~ 362 (715)
T 2va8_A 333 GFRQRKIKVIVATP-----TLAA--GVNLPARTVIIG 362 (715)
T ss_dssp HHHTTCSCEEEECG-----GGGG--SSCCCBSEEEEC
T ss_pred HHHcCCCeEEEECh-----HHhc--ccCCCceEEEEe
Confidence 24679999993 2233 577778877663
No 431
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=56.87 E-value=4.2 Score=35.46 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.1
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-+++.|++|||||++
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999985
No 432
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=56.87 E-value=3.7 Score=38.35 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=18.9
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|+|||+ ++-++..+.
T Consensus 49 ~Gei~~liG~NGsGKST--Llk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST--FLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHH--HHHHHHcCC
Confidence 35667799999999997 355555443
No 433
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=56.69 E-value=4.7 Score=42.70 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=14.0
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
++|+.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.67 E-value=4.6 Score=37.15 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=19.0
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|+|||+ ++-++..+.
T Consensus 31 ~Ge~~~l~G~nGsGKST--Ll~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT--TLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhCCC
Confidence 36667799999999997 355555443
No 435
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.62 E-value=44 Score=32.82 Aligned_cols=73 Identities=8% Similarity=0.115 Sum_probs=52.2
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCc-----c-cccCCCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIG 438 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 438 (586)
.+.++||.++++..+..+...+.. .+..+..++|+...... ...+..+..+|+|+|.- + ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 467899999999988877776654 46788888887765443 44555678899999952 2 23456677
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887774
No 436
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=56.53 E-value=4.4 Score=36.33 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.4
Q ss_pred CeEEEcCCCchhHHHh
Q 007879 164 DICGSAITGSGKTAAF 179 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~ 179 (586)
.+++.|++|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999853
No 437
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.49 E-value=5.1 Score=46.90 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=25.9
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHCCCCCcEEE
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~i~ 307 (586)
+++-+++|+||+=.-++..-...+.+.+..+.+++-+|+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 456679999999988887666666666555444443333
No 438
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=56.22 E-value=5.8 Score=39.09 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.3
Q ss_pred CeEEEcCCCchhHHHh
Q 007879 164 DICGSAITGSGKTAAF 179 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~ 179 (586)
-.++.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4569999999999753
No 439
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.10 E-value=3.9 Score=38.04 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=18.8
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|||||+ ++-++..+.
T Consensus 40 ~Gei~~l~G~NGsGKST--Llk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT--TLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHH--HHHHHhcCC
Confidence 36667799999999997 355554443
No 440
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=55.98 E-value=4 Score=35.58 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
|..+++.|++|||||+.
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999975
No 441
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=55.95 E-value=4.3 Score=37.26 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.9
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..+.
T Consensus 30 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS--LLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 46677899999999997 355554443
No 442
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=55.93 E-value=22 Score=39.05 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-----ccc-C-CCCC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----ARG-L-DIIG 438 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~G-l-di~~ 438 (586)
+.++||.|+++..+......+.. .++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999888776655544 4899999999987665433222 357899999532 222 3 5567
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788875
No 443
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=55.76 E-value=14 Score=38.23 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=49.0
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-----ccc-C-CCCC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----ARG-L-DIIG 438 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~G-l-di~~ 438 (586)
+.++||.|+++..+......+.. .++.+..++|+.+...+...+. +..+|+|+|.-. ..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999888776665554 4899999999986554432222 246899998532 222 3 5667
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788775
No 444
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=55.74 E-value=11 Score=36.26 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=27.3
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~L 208 (586)
-+++.+|+|+|||.. ++.++..+.... .+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~g---~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQY---PDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHHC---TTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhcC---CCceEEEEeccchh
Confidence 467999999999976 455555544321 12368888776555
No 445
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=55.67 E-value=19 Score=37.30 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=46.8
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-----ccc-C-CCCC
Q 007879 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----ARG-L-DIIG 438 (586)
Q Consensus 370 ~~~~lIF~~s~~~~~~l~~~l~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-----~~G-l-di~~ 438 (586)
+.++||.++++..+......+.. .++.+..++|+.+...+...+. ...+|+|+|.-. ..| + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999888776665554 4899999999987655433222 236899999642 222 4 6778
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 446
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=55.35 E-value=6.3 Score=35.05 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=17.8
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhcC
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLYR 190 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~~ 190 (586)
-.++.||+|+|||.. +-++..++..
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 357999999999974 4555555544
No 447
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.25 E-value=4.7 Score=35.57 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=12.6
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+++.|++|||||+.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67999999999975
No 448
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=55.15 E-value=6.4 Score=40.29 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
..++|+.||+|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 45889999999999975
No 449
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=55.13 E-value=4.8 Score=35.61 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=13.1
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
-+++.|++|||||++
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999975
No 450
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=55.02 E-value=4.7 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.5
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
..+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3467999999999975
No 451
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=54.84 E-value=78 Score=34.65 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=65.1
Q ss_pred chhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcC----CCc
Q 007879 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS----MPD 248 (586)
Q Consensus 173 sGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 248 (586)
|||... +.-++..+... +.++||.+..+..+..+...+.. .++.+..++|+.+...+...+.. ...
T Consensus 555 s~K~~~-L~~lL~~~~~~-----g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 555 SGKMVL-LDQLLTRLKKD-----GHRVLIFSQMVRMLDILGDYLSI----KGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp CHHHHH-HHHHHHHHTTT-----TCCEEEEESCHHHHHHHHHHHHH----HTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred ChHHHH-HHHHHHHHhhC-----CCeEEEEechHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 556543 44455544333 33799999999887777666654 37888899999988777655432 122
Q ss_pred ---EEEECcHHHHHHHHhcCCcCccCceEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 249 ---IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 249 ---Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
++++| ... +.++++.....||+=+. .|+....++.+-+..
T Consensus 625 ~~v~LlSt-----~ag--g~GlNL~~a~~VI~~D~----~wnp~~~~Qa~gR~~ 667 (800)
T 3mwy_W 625 DFVFLLST-----RAG--GLGINLMTADTVVIFDS----DWNPQADLQAMARAH 667 (800)
T ss_dssp CCCEEEEH-----HHH--TTTCCCTTCCEEEESSC----CSCSHHHHHHHTTTS
T ss_pred ceEEEEec-----ccc--cCCCCccccceEEEecC----CCChhhHHHHHHHHH
Confidence 55555 222 23677777887776433 355566555554443
No 452
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=54.74 E-value=4.3 Score=38.03 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=18.8
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|||||+ ++-++..+.
T Consensus 32 ~Ge~~~liG~nGsGKST--Ll~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST--LLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhCCC
Confidence 36667799999999997 355554443
No 453
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=54.67 E-value=14 Score=42.09 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=55.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCC----ceEEecCCCCHHHHHHHHHHHhcCCCcEEEecCcc-cccCC-CCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGL----AAL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLD-IIG 438 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~----~~~----~~~~l~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~-~~Gld-i~~ 438 (586)
.+.++||.++++..+..+...+.. .++ .+..++|+.+...+......+.+ .+|+|+|.-. ..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 357899999999998887776653 366 89999999999888777777776 8999999632 11111 557
Q ss_pred ccEEEE
Q 007879 439 VQTVIN 444 (586)
Q Consensus 439 v~~VI~ 444 (586)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 778775
No 454
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.63 E-value=5.3 Score=40.37 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
.+++++.||+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999975
No 455
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=54.60 E-value=4.9 Score=35.68 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=12.3
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+.+.|++|||||++
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999975
No 456
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=54.58 E-value=4.2 Score=38.40 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=18.9
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|+|||+ ++-++..+.
T Consensus 46 ~Ge~~~liG~NGsGKST--Llk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT--LLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhCCC
Confidence 36667799999999997 355555443
No 457
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=54.57 E-value=5 Score=34.15 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=13.0
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367999999999975
No 458
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=54.56 E-value=4.1 Score=35.25 Aligned_cols=18 Identities=28% Similarity=0.117 Sum_probs=10.8
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
+.-+++.|++|||||++.
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999853
No 459
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=54.49 E-value=8.4 Score=29.70 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=31.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~ 404 (586)
...+++|||.+-..+......|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 357899999998889999999999999999998875
No 460
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=54.37 E-value=5.6 Score=35.56 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.0
Q ss_pred eEEEcCCCchhHHHh
Q 007879 165 ICGSAITGSGKTAAF 179 (586)
Q Consensus 165 ~lv~~~TGsGKT~~~ 179 (586)
+++.||+||||++++
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999864
No 461
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=54.35 E-value=4.8 Score=35.62 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.9
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367999999999975
No 462
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=54.25 E-value=4.9 Score=37.39 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.6
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
.-++++|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3578999999999975
No 463
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=54.22 E-value=27 Score=37.39 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=52.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHH---HHHHhc---CCCcEEEECcHHHHHHHHhcCCcCccCc
Q 007879 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM---QETALR---SMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (586)
Q Consensus 199 vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~Ili~Tp~~l~~~l~~~~~~~l~~~ 272 (586)
.+|+++++.-+.++++.+.. .++.+..++|+.+... ....+. +..+|+|||. .+.. ++++ ++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~--GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM--GLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS--SCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC--CcCc-Cc
Confidence 35668888888888777776 3778999999998774 334444 4479999994 2233 5778 89
Q ss_pred eEEEEeCcccc
Q 007879 273 AVLILDEADRL 283 (586)
Q Consensus 273 ~~lViDEah~l 283 (586)
.+||.-...+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998877654
No 464
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=54.19 E-value=12 Score=28.28 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=30.7
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCCceEEecCCCC
Q 007879 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (586)
Q Consensus 371 ~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~~ 405 (586)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999999888888764
No 465
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=54.18 E-value=8.4 Score=37.09 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=13.6
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
++-+++.+++|+|||++
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 33466899999999975
No 466
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.01 E-value=21 Score=31.28 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=19.6
Q ss_pred CcEEEECcHHHHHHHHhcCCcCccCceEEEEeCccc
Q 007879 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (586)
Q Consensus 247 ~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 282 (586)
.+++-+.+..+...+... ...++++|||=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l----~~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD----LADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHH----TTTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHh----cCCCCEEEEECCCC
Confidence 355555556666655542 23588999996544
No 467
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=53.93 E-value=7.7 Score=41.17 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHHHhcCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 156 i~~il~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
-..+..|..+++.||+|+|||+. +-++..++
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred cccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 34455688999999999999974 44444444
No 468
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=53.84 E-value=5.1 Score=35.61 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.1
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.+.-+++.|+.|||||+.
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 356678999999999985
No 469
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=53.39 E-value=5.3 Score=36.38 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.|++|||||++
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999985
No 470
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.12 E-value=8.7 Score=39.87 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=26.0
Q ss_pred cCceEEEEeCcccccCC--CcHHHHHHHHHHCCCCCcEEEEeecC
Q 007879 270 DDLAVLILDEADRLLEL--GFSAEIHELVRLCPKRRQTMLFSATL 312 (586)
Q Consensus 270 ~~~~~lViDEah~l~~~--~~~~~i~~i~~~~~~~~q~i~~SAT~ 312 (586)
....+|||||+|.+... +....+..++... ...+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 34578999999998753 2334455555442 34567777664
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.08 E-value=5 Score=37.38 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=19.3
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||+|||||+ ++-++..++
T Consensus 45 ~Ge~~~i~G~nGsGKST--Ll~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST--IAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhccC
Confidence 46777899999999997 355555443
No 472
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=53.07 E-value=6.1 Score=36.31 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=16.9
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 164 DICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
-+.+.||.|||||+ ++-++..+.
T Consensus 26 ~~~liG~nGsGKST--Ll~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSV--FLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHH--HHHHHHTSS
T ss_pred EEEEECCCCCCHHH--HHHHHhCCC
Confidence 34599999999997 455665544
No 473
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=53.03 E-value=5.3 Score=36.72 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+.-+++.|++|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45678999999999974
No 474
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=52.93 E-value=5.3 Score=35.78 Aligned_cols=15 Identities=20% Similarity=0.065 Sum_probs=13.1
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999985
No 475
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=52.91 E-value=5.3 Score=35.50 Aligned_cols=17 Identities=41% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+.-+.+.|++|||||+.
T Consensus 21 ~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45567999999999974
No 476
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=52.90 E-value=5.5 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.2
Q ss_pred cCCCeEEEcCCCchhHHH
Q 007879 161 TGRDICGSAITGSGKTAA 178 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~ 178 (586)
.+.-+++.|+.|||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999985
No 477
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=52.79 E-value=5.5 Score=34.76 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=12.5
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+++.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57999999999975
No 478
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=52.43 E-value=11 Score=36.23 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=18.4
Q ss_pred CCCeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
|.-+.+.||+|||||+. +-++..++.
T Consensus 90 g~ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CEEEEEECCCCchHHHH--HHHHHhhcc
Confidence 33456999999999974 555655554
No 479
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=52.38 E-value=5.6 Score=35.74 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.3
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34578999999999985
No 480
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.37 E-value=5.6 Score=36.53 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCchhHHH
Q 007879 162 GRDICGSAITGSGKTAA 178 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~ 178 (586)
+..+++.|+.|||||++
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 44688999999999985
No 481
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=52.14 E-value=6.3 Score=35.57 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCchhHHHh
Q 007879 162 GRDICGSAITGSGKTAAF 179 (586)
Q Consensus 162 g~~~lv~~~TGsGKT~~~ 179 (586)
.+-+++.||+||||++++
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345678999999999864
No 482
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=51.81 E-value=8.9 Score=38.95 Aligned_cols=21 Identities=29% Similarity=0.204 Sum_probs=17.7
Q ss_pred HHhcCCCeEEEcCCCchhHHH
Q 007879 158 LALTGRDICGSAITGSGKTAA 178 (586)
Q Consensus 158 ~il~g~~~lv~~~TGsGKT~~ 178 (586)
.+..|+.+++.++.|.|||..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHH
T ss_pred hhccCCEEEEECCCCCCccHH
Confidence 345688899999999999975
No 483
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=51.58 E-value=5.9 Score=34.66 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=12.4
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999985
No 484
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.56 E-value=4.8 Score=37.29 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=13.6
Q ss_pred CCeEEEcCCCchhHHH
Q 007879 163 RDICGSAITGSGKTAA 178 (586)
Q Consensus 163 ~~~lv~~~TGsGKT~~ 178 (586)
..++++|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577999999999975
No 485
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=51.34 E-value=12 Score=38.21 Aligned_cols=68 Identities=6% Similarity=0.036 Sum_probs=44.6
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeCCCChHHHHHHhcCCCcEEEECcHHHHHHHHhcCCcCccCceEEE
Q 007879 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (586)
Q Consensus 197 ~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~Tp~~l~~~l~~~~~~~l~~~~~lV 276 (586)
.++||.||++.-|..+++.+... ++.+..+++............+..+|+|+|. .+.. ++++.. .+||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~~--GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC-----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHHh--CeecCC-CEEE
Confidence 46999999999999988888764 7788888886433222222234579999993 2222 455666 5554
No 486
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=51.24 E-value=5.9 Score=35.81 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.6
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+++.|++|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999985
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=50.36 E-value=5.9 Score=38.84 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=19.3
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHh
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~ 188 (586)
.|.-+.+.||.|||||+ ++-++.-+.
T Consensus 29 ~Ge~~~llGpsGsGKST--LLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTT--LLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHH--HHHHHHTSS
T ss_pred CCCEEEEECCCCchHHH--HHHHHhcCC
Confidence 35667799999999997 466665544
No 488
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=50.31 E-value=15 Score=28.52 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCc-eEEecCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNL 404 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~-~~~l~~~~ 404 (586)
...+++|||.+-..+......|...|+. +..+.|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 3568999999988899999999999995 88888875
No 489
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=50.31 E-value=6.2 Score=36.93 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=18.5
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.|.-+.+.||+|+|||+. +-++..+
T Consensus 45 ~Ge~~~l~G~NGsGKSTL--lk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL--SATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHHTC
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 366677999999999973 5555544
No 490
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=50.20 E-value=11 Score=29.23 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=31.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceEEecCCC
Q 007879 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404 (586)
Q Consensus 369 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~l~~~~ 404 (586)
...+++|||.+-..+...+..|...|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 356899999988888889999999999988888875
No 491
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.16 E-value=15 Score=31.64 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=16.0
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHH
Q 007879 164 DICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
-+++.|+.|+|||.. +-.++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 456899999999974 34444443
No 492
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.13 E-value=9.1 Score=39.54 Aligned_cols=50 Identities=8% Similarity=-0.088 Sum_probs=29.1
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~ 216 (586)
.|.-+++.|++|+|||.. ++-++..+.... +.+|+++.---. ..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~l-al~~a~~~a~~~----g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTF-VRQQALQWGTAM----GKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHH-HHHHHHHHTTTS----CCCEEEEESSSC-HHHHHHHH
T ss_pred CCeEEEEeecCCCCchHH-HHHHHHHHHHhc----CCcEEEEeccCC-HHHHHHHH
Confidence 356678999999999975 455554444321 224777764322 23444433
No 493
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=50.08 E-value=84 Score=30.94 Aligned_cols=90 Identities=9% Similarity=0.067 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCeEEEcCCCc-hhHHHhhhhhHHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceEEEEeC
Q 007879 154 ACIPLALTGRDICGSAITGS-GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232 (586)
Q Consensus 154 ~~i~~il~g~~~lv~~~TGs-GKT~~~~l~~l~~l~~~~~~~~~~~vlil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~ 232 (586)
..+...+.++.++|.|.||. |.-++- .+...+ ...++++.-...-..+....+.....+.+..+..+.+
T Consensus 27 ~~~~~~~~~k~vLVTGatG~IG~~l~~------~L~~~g----~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~~~ 96 (399)
T 3nzo_A 27 KELQSVVSQSRFLVLGGAGSIGQAVTK------EIFKRN----PQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFAL 96 (399)
T ss_dssp HHHHHHHHTCEEEEETTTSHHHHHHHH------HHHTTC----CSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEECC
T ss_pred HHHHHHhCCCEEEEEcCChHHHHHHHH------HHHHCC----CCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 34556678999999999986 777643 222222 1256666665555555555555543333456777777
Q ss_pred CCChHHHHHHhc--CCCcEEEEC
Q 007879 233 GLSTKMQETALR--SMPDIVVAT 253 (586)
Q Consensus 233 ~~~~~~~~~~~~--~~~~Ili~T 253 (586)
+.........+. .++|+||-.
T Consensus 97 Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 97 DIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp CTTSHHHHHHHHHCCCCSEEEEC
T ss_pred eCCCHHHHHHHHHhCCCCEEEEC
Confidence 766544333332 567888755
No 494
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=49.82 E-value=6.3 Score=36.44 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=18.5
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.|.-+.+.||.|+|||+. +-++..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTL--lk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL--GKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHTC
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 466677999999999973 5555543
No 495
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=49.72 E-value=6.3 Score=34.70 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=12.9
Q ss_pred CeEEEcCCCchhHHH
Q 007879 164 DICGSAITGSGKTAA 178 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~ 178 (586)
.+.+.|++|||||++
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366999999999985
No 496
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=49.45 E-value=6.1 Score=36.53 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.3
Q ss_pred cCCCeEEEcCCCchhHHHhhhhhHHHH
Q 007879 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (586)
Q Consensus 161 ~g~~~lv~~~TGsGKT~~~~l~~l~~l 187 (586)
.|.-+.+.||.|+|||+. +-++..+
T Consensus 25 ~Ge~~~liG~NGsGKSTL--lk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL--LARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCC
Confidence 366677999999999973 5555444
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=49.24 E-value=8.6 Score=36.45 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=12.0
Q ss_pred eEEEcCCCchhHHH
Q 007879 165 ICGSAITGSGKTAA 178 (586)
Q Consensus 165 ~lv~~~TGsGKT~~ 178 (586)
+.++|++|||||+.
T Consensus 34 i~I~G~sGsGKSTl 47 (290)
T 1odf_A 34 IFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45899999999974
No 498
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=48.94 E-value=13 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=17.3
Q ss_pred CeEEEcCCCchhHHHhhhhhHHHHhc
Q 007879 164 DICGSAITGSGKTAAFALPTLERLLY 189 (586)
Q Consensus 164 ~~lv~~~TGsGKT~~~~l~~l~~l~~ 189 (586)
-+.+.|++|||||+. +-++..++.
T Consensus 82 iigI~G~~GsGKSTl--~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTT--ARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHHh
Confidence 355899999999974 555555543
No 499
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=48.86 E-value=6.4 Score=38.45 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=20.8
Q ss_pred ccCceEEEEeCcccccCCCcHHHHHHHHHHC
Q 007879 269 LDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (586)
Q Consensus 269 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 299 (586)
+.+.+++++||--.-++......+..+++.+
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l 173 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVL 173 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 3556789999987777765566665555544
No 500
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=48.54 E-value=6.6 Score=38.79 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HhcCCCeEEEcCCCchhHHHhhhhhHHHHhcCCCCCCCeEEEE
Q 007879 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (586)
Q Consensus 159 il~g~~~lv~~~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vli 201 (586)
+-.|.-+.+.||+|||||+ ++-++.-+.....+ .+.+
T Consensus 26 i~~Ge~~~llGpsGsGKST--LLr~iaGl~~p~~G----~I~i 62 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKST--LLRMIAGLETITSG----DLFI 62 (381)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHHHTSSCCSEE----EEEE
T ss_pred ECCCCEEEEEcCCCchHHH--HHHHHHcCCCCCCe----EEEE
Done!