Query 007880
Match_columns 586
No_of_seqs 326 out of 2741
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 9.3E-82 2E-86 686.1 41.1 444 76-586 68-516 (727)
2 PLN03192 Voltage-dependent pot 100.0 1E-64 2.2E-69 585.0 43.0 417 75-586 51-469 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 7.1E-64 1.5E-68 507.7 29.9 380 93-569 4-383 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 8.2E-62 1.8E-66 496.4 26.7 412 75-568 207-621 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 8E-53 1.7E-57 432.1 27.3 386 74-569 216-604 (815)
6 KOG3713 Voltage-gated K+ chann 100.0 7.8E-29 1.7E-33 255.1 11.1 304 4-435 125-446 (477)
7 KOG1545 Voltage-gated shaker-l 99.7 1.1E-19 2.4E-24 178.6 -3.0 204 126-432 252-459 (507)
8 KOG4390 Voltage-gated A-type K 99.6 1E-17 2.2E-22 166.0 -6.5 188 128-427 228-417 (632)
9 PF00520 Ion_trans: Ion transp 99.3 7.7E-12 1.7E-16 119.5 11.2 192 131-415 1-200 (200)
10 KOG1419 Voltage-gated K+ chann 99.2 5.2E-11 1.1E-15 124.1 12.7 87 365-459 267-355 (654)
11 KOG1420 Ca2+-activated K+ chan 99.0 8.7E-10 1.9E-14 114.9 8.7 125 366-501 287-418 (1103)
12 KOG1113 cAMP-dependent protein 99.0 1.5E-09 3.2E-14 108.4 9.0 92 490-585 121-212 (368)
13 KOG0614 cGMP-dependent protein 98.9 1.5E-09 3.2E-14 112.9 4.0 107 476-586 139-245 (732)
14 smart00100 cNMP Cyclic nucleot 98.8 1.9E-08 4.2E-13 86.9 10.3 74 498-571 1-75 (120)
15 PRK09392 ftrB transcriptional 98.8 9.6E-09 2.1E-13 101.8 9.2 97 490-586 6-102 (236)
16 PLN02868 acyl-CoA thioesterase 98.8 2.5E-08 5.4E-13 107.1 12.2 94 490-585 7-100 (413)
17 PF07885 Ion_trans_2: Ion chan 98.8 3E-08 6.6E-13 80.6 9.3 54 366-420 23-78 (79)
18 cd00038 CAP_ED effector domain 98.7 4.4E-08 9.6E-13 84.1 9.0 86 498-583 1-87 (115)
19 KOG0614 cGMP-dependent protein 98.7 6.6E-09 1.4E-13 108.2 3.4 96 487-582 268-365 (732)
20 PRK11753 DNA-binding transcrip 98.6 4.2E-07 9.2E-12 88.2 10.8 84 500-583 6-91 (211)
21 KOG1113 cAMP-dependent protein 98.5 4.5E-08 9.7E-13 98.0 3.3 95 487-584 236-330 (368)
22 COG0664 Crp cAMP-binding prote 98.5 4.2E-07 9.1E-12 87.8 9.0 91 494-584 3-94 (214)
23 PRK10402 DNA-binding transcrip 98.4 6.2E-07 1.4E-11 88.3 7.6 77 508-584 25-102 (226)
24 PF00027 cNMP_binding: Cyclic 98.3 7.9E-07 1.7E-11 73.4 4.9 68 516-583 1-69 (91)
25 PRK11161 fumarate/nitrate redu 98.3 3E-06 6.4E-11 83.9 9.7 78 493-570 15-94 (235)
26 PRK13918 CRP/FNR family transc 98.2 4.7E-06 1E-10 80.3 8.6 71 513-584 5-78 (202)
27 COG2905 Predicted signal-trans 98.1 1E-05 2.3E-10 86.0 9.1 80 490-572 6-85 (610)
28 PRK10537 voltage-gated potassi 98.0 7.4E-05 1.6E-09 79.2 14.0 53 366-419 167-221 (393)
29 PF08412 Ion_trans_N: Ion tran 98.0 6.6E-06 1.4E-10 65.4 3.7 34 77-110 38-71 (77)
30 PRK09391 fixK transcriptional 97.9 5.2E-05 1.1E-09 74.8 9.0 62 508-569 32-94 (230)
31 TIGR03697 NtcA_cyano global ni 97.8 4.8E-05 1E-09 72.6 7.4 54 522-575 1-55 (193)
32 KOG3684 Ca2+-activated K+ chan 97.7 0.0014 3.1E-08 68.2 16.6 88 365-461 285-374 (489)
33 PF01007 IRK: Inward rectifier 97.2 0.002 4.3E-08 66.8 10.5 58 366-424 83-144 (336)
34 KOG1418 Tandem pore domain K+ 96.7 0.0021 4.6E-08 69.0 5.4 58 367-425 115-174 (433)
35 KOG2968 Predicted esterase of 96.6 0.0012 2.6E-08 73.6 2.6 81 504-584 498-579 (1158)
36 KOG2302 T-type voltage-gated C 96.3 0.16 3.5E-06 57.7 16.6 71 69-149 1099-1178(1956)
37 KOG4404 Tandem pore domain K+ 95.5 0.096 2.1E-06 52.7 10.0 61 367-427 186-255 (350)
38 PLN03223 Polycystin cation cha 95.2 3.7 8E-05 49.2 22.6 100 394-497 1397-1517(1634)
39 KOG3827 Inward rectifier K+ ch 94.8 0.15 3.2E-06 52.6 9.0 59 366-424 111-172 (400)
40 KOG3193 K+ channel subunit [In 93.4 0.27 5.8E-06 52.5 7.8 38 369-407 219-258 (1087)
41 KOG3542 cAMP-regulated guanine 92.9 0.1 2.3E-06 56.8 4.1 78 488-569 278-356 (1283)
42 KOG4404 Tandem pore domain K+ 91.0 0.075 1.6E-06 53.4 0.4 52 366-418 79-132 (350)
43 KOG2302 T-type voltage-gated C 89.8 35 0.00077 39.9 19.5 73 65-150 64-136 (1956)
44 KOG3614 Ca2+/Mg2+-permeable ca 89.7 12 0.00025 45.1 16.5 53 397-449 1020-1074(1381)
45 KOG2968 Predicted esterase of 89.0 0.88 1.9E-05 51.8 6.6 85 475-567 84-169 (1158)
46 KOG1418 Tandem pore domain K+ 87.7 0.22 4.8E-06 53.3 1.0 45 367-412 242-296 (433)
47 KOG2301 Voltage-gated Ca2+ cha 87.1 27 0.00057 43.8 18.0 49 126-204 472-520 (1592)
48 KOG3542 cAMP-regulated guanine 84.5 1.2 2.6E-05 48.9 4.5 69 477-545 23-91 (1283)
49 KOG2301 Voltage-gated Ca2+ cha 84.0 7.5 0.00016 48.4 11.4 46 126-200 871-916 (1592)
50 COG4709 Predicted membrane pro 79.6 7.7 0.00017 36.3 7.2 77 430-508 4-84 (195)
51 PF08006 DUF1700: Protein of u 74.0 14 0.00029 34.8 7.7 56 430-487 4-63 (181)
52 PF07883 Cupin_2: Cupin domain 65.9 12 0.00027 28.5 4.6 44 517-565 3-47 (71)
53 TIGR03037 anthran_nbaC 3-hydro 60.8 34 0.00073 31.5 7.0 62 514-577 29-92 (159)
54 PF05899 Cupin_3: Protein of u 60.8 15 0.00033 29.0 4.2 41 520-566 15-55 (74)
55 KOG0500 Cyclic nucleotide-gate 59.2 2.7E+02 0.0059 30.4 16.3 101 449-569 248-374 (536)
56 PF00060 Lig_chan: Ligand-gate 57.8 18 0.00039 32.2 4.8 73 365-443 42-115 (148)
57 PRK11832 putative DNA-binding 54.5 84 0.0018 30.3 8.8 62 505-569 13-75 (207)
58 PF08016 PKD_channel: Polycyst 53.6 2E+02 0.0043 30.9 12.9 20 179-199 234-253 (425)
59 smart00835 Cupin_1 Cupin. This 51.8 57 0.0012 29.3 7.1 56 512-567 30-87 (146)
60 PF14377 DUF4414: Domain of un 51.6 18 0.00039 31.0 3.5 44 444-487 52-105 (108)
61 PRK04190 glucose-6-phosphate i 49.7 91 0.002 29.7 8.3 52 514-565 70-130 (191)
62 TIGR03404 bicupin_oxalic bicup 45.5 67 0.0015 34.0 7.4 52 514-565 69-120 (367)
63 COG0662 {ManC} Mannose-6-phosp 44.3 82 0.0018 27.6 6.7 50 511-565 35-85 (127)
64 PF13314 DUF4083: Domain of un 43.1 1.1E+02 0.0024 22.9 5.9 28 414-441 26-56 (58)
65 PRK13264 3-hydroxyanthranilate 42.8 92 0.002 29.2 6.9 60 514-575 35-96 (177)
66 TIGR03404 bicupin_oxalic bicup 41.7 91 0.002 33.0 7.6 53 513-565 246-299 (367)
67 PF02037 SAP: SAP domain; Int 38.4 68 0.0015 21.2 4.0 26 432-457 5-35 (35)
68 PRK13290 ectC L-ectoine syntha 38.1 91 0.002 27.4 5.9 53 514-569 37-89 (125)
69 PF04831 Popeye: Popeye protei 37.7 2E+02 0.0044 26.2 8.0 61 501-565 14-76 (153)
70 PF07697 7TMR-HDED: 7TM-HD ext 37.7 1.8E+02 0.0039 27.8 8.7 59 474-533 146-207 (222)
71 KOG3599 Ca2+-modulated nonsele 37.4 7.6E+02 0.016 29.2 19.3 30 234-264 564-593 (798)
72 COG1917 Uncharacterized conser 34.5 93 0.002 27.2 5.5 52 514-570 45-97 (131)
73 cd07313 terB_like_2 tellurium 30.6 2.5E+02 0.0054 23.2 7.4 63 430-492 18-83 (104)
74 PRK06771 hypothetical protein; 30.5 2.6E+02 0.0057 23.2 6.8 48 408-455 14-61 (93)
75 COG5559 Uncharacterized conser 30.2 83 0.0018 23.6 3.5 24 440-463 6-29 (65)
76 TIGR00870 trp transient-recept 29.9 9.3E+02 0.02 27.9 16.7 58 368-425 562-621 (743)
77 PF14377 DUF4414: Domain of un 28.9 99 0.0021 26.4 4.5 50 444-493 8-70 (108)
78 PF00190 Cupin_1: Cupin; Inte 28.8 1.4E+02 0.0031 26.6 5.8 55 513-567 35-96 (144)
79 KOG3676 Ca2+-permeable cation 28.8 9.9E+02 0.021 27.9 18.4 72 382-454 605-682 (782)
80 KOG1832 HIV-1 Vpr-binding prot 28.5 18 0.0004 41.6 -0.1 28 17-44 1400-1427(1516)
81 PHA03029 hypothetical protein; 28.4 2.9E+02 0.0064 21.7 6.4 41 392-432 4-44 (92)
82 KOG0498 K+-channel ERG and rel 27.4 2.8E+02 0.006 32.2 8.9 66 474-544 371-460 (727)
83 PLN03192 Voltage-dependent pot 27.0 1.1E+03 0.024 27.8 26.7 42 444-490 358-399 (823)
84 COG3837 Uncharacterized conser 24.2 2.2E+02 0.0048 26.1 5.9 52 514-570 44-97 (161)
85 PF01484 Col_cuticle_N: Nemato 24.1 2.7E+02 0.0059 19.8 6.5 41 395-435 8-48 (53)
86 COG3450 Predicted enzyme of th 22.9 2.4E+02 0.0051 24.6 5.7 41 519-565 52-92 (116)
87 PF00520 Ion_trans: Ion transp 21.2 3.3E+02 0.0071 24.7 7.1 25 262-286 99-123 (200)
88 PF13867 SAP30_Sin3_bdg: Sin3 21.1 1.8E+02 0.0038 21.4 3.9 36 433-473 3-45 (53)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-82 Score=686.13 Aligned_cols=444 Identities=39% Similarity=0.718 Sum_probs=385.6
Q ss_pred cccCCCChhHHhhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHhhheeEEeec
Q 007880 76 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAY 155 (586)
Q Consensus 76 ~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t~y~~~ 155 (586)
.+++|+|++++.||.+++++++|+++++|++++|+...++..| .|......+.+++.++|++|++||+++|+|||+++
T Consensus 68 ~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~ 145 (727)
T KOG0498|consen 68 WILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDP 145 (727)
T ss_pred eeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEECC
Confidence 3999999999999999999999999999999999998888788 78888888999999999999999999999999988
Q ss_pred -CccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhccccccccchHHHHHHHHHHHHHHhH
Q 007880 156 -GVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQY 234 (586)
Q Consensus 156 -~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~ll~~~~l~~r 234 (586)
+. ++| . |||+||+||+ |+||++|++|++|+++++.+..+. ..........+..+.+++|
T Consensus 146 ~s~-----elV-~--------dpk~IA~rYl--~twFiiDlis~lP~~~i~~~~~~~----~~~~~~~~~~l~~il~~~r 205 (727)
T KOG0498|consen 146 SSY-----ELV-D--------DPKKIAKRYL--KTWFLIDLISTLPFDQIVVLVVIG----STSLALESTILVGILLLQR 205 (727)
T ss_pred CCc-----eee-e--------CHHHHHHHHH--hhhHHHHHHHhcChhhheeeeeec----ccchhhhHHHHHHHHHHHH
Confidence 32 455 4 6999999999 999999999999999998876541 1111222224455556679
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhcCCCcccccccCCCc
Q 007880 235 LPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPI 314 (586)
Q Consensus 235 l~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~ 314 (586)
|+|+.|++++++++++..++++.++|....++++++++++||+||+||++|..+..+||++.
T Consensus 206 L~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------ 267 (727)
T KOG0498|consen 206 LPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------ 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------
Confidence 99999999999999999999999999987788999999999999999999999888887653
Q ss_pred ccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhHHHHHHHHhhhhccc--cccccccccch
Q 007880 315 YYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWL 392 (586)
Q Consensus 315 ~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~slYwa~~TmtT--yGDi~p~t~~~ 392 (586)
+|.........|.+ ..|+||+| +++.+|++|+||+++|||| |||++|.|. .
T Consensus 268 --------------tw~~~l~~~~~~~~--~~~~fg~~----------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~-~ 320 (727)
T KOG0498|consen 268 --------------TWLGSLGRLLSCYN--LSFTFGIY----------SLALKYVYALYWGLSTLSTVGYGLVHANNM-G 320 (727)
T ss_pred --------------ccccccccccccCc--ccccccch----------hHHHHHHHHHHHHhhHhhhccCCccCCCCc-H
Confidence 33322110001221 12567655 4567999999999999999 999999995 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChhHh
Q 007880 393 EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEM 472 (586)
Q Consensus 393 E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~~i 472 (586)
|++|+|++|++|.++||++||||+++++..+.+..+|+.++.++++||+.++||++||+||++|++|+|..++|+||+++
T Consensus 321 E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~l 400 (727)
T KOG0498|consen 321 EKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEEL 400 (727)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCC
Q 007880 473 ISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN 552 (586)
Q Consensus 473 l~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~ 552 (586)
|+.||+.||.+|..|+|.++++++|+|++++++++.+|+.++++.+|+|||+|++|||+.++||||.+|.+++.....+|
T Consensus 401 L~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~ 480 (727)
T KOG0498|consen 401 LQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGG 480 (727)
T ss_pred HHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765556
Q ss_pred cEEEEEeCCCCEEe-ecCCCCC-CccccceeeeccC
Q 007880 553 IKSCCMLGPGNFSG-IWPGSRR-CEICDTTFQVHVC 586 (586)
Q Consensus 553 ~~~i~~l~~G~~FG-E~~~~~~-~~~~at~~~~~~~ 586 (586)
..+...|++||+|| |+...-. -|.++|..+...|
T Consensus 481 ~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~ 516 (727)
T KOG0498|consen 481 FFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYC 516 (727)
T ss_pred eEEEEEecCCCccchHHHHHHhcCCCCceeehhhhh
Confidence 66779999999999 7752222 3446666555443
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1e-64 Score=585.03 Aligned_cols=417 Identities=17% Similarity=0.292 Sum_probs=343.1
Q ss_pred CcccCCCChhHHhhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHhhheeEEee
Q 007880 75 GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAA 154 (586)
Q Consensus 75 ~~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t~y~~ 154 (586)
+.+|+|++++++.||.+++++++|+++++|+.++|.... ....+.+++.++|++|++||+++|+|||+|
T Consensus 51 ~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~-----------~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d 119 (823)
T PLN03192 51 GWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNAS-----------PKRGLEIADNVVDLFFAVDIVLTFFVAYID 119 (823)
T ss_pred CeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCC-----------CCCCeeeHHHHHHHHHHHHHHhheeEEEEe
Confidence 459999999999999999999999999999987663111 012345889999999999999999999997
Q ss_pred cCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhccccccccchHHHHHHHHHHHHHHhH
Q 007880 155 YGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQY 234 (586)
Q Consensus 155 ~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~ll~~~~l~~r 234 (586)
+ ..|.+| . ||++|++||+ |+||++|++|++|++++...+ ... .......++|+++ |
T Consensus 120 ~----~~~~lV-~--------d~~~I~~~Yl--~~~f~~Dlis~lP~~~i~~~~-~~~----~~~~~~~~~l~ll----r 175 (823)
T PLN03192 120 P----RTQLLV-R--------DRKKIAVRYL--STWFLMDVASTIPFQALAYLI-TGT----VKLNLSYSLLGLL----R 175 (823)
T ss_pred C----CCcEEE-e--------CHHHHHHHHH--HHhHHHHHHHHhHHHHHHHHh-cCC----ccchHHHHHHHHH----H
Confidence 6 345666 4 6999999999 899999999999998774322 111 1111122333332 4
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhcCCCcccccccCCCc
Q 007880 235 LPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPI 314 (586)
Q Consensus 235 l~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~ 314 (586)
++|+.|+.+++.++++...+ ...+.+++++++.+++++||+||+||+++...
T Consensus 176 l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~-------------------------- 227 (823)
T PLN03192 176 FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY-------------------------- 227 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------
Confidence 55667777777777654332 22333456666667789999999999987421
Q ss_pred ccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhHHHHHHHHhhhhccc--cccccccccch
Q 007880 315 YYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWL 392 (586)
Q Consensus 315 ~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~slYwa~~TmtT--yGDi~p~t~~~ 392 (586)
+..+.+|+.... +...+.+++.+|++|+|||++|||| |||++|.|+ .
T Consensus 228 ---------~~~~~~Wi~~~~---------------------~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~-~ 276 (823)
T PLN03192 228 ---------PHQGKTWIGAVI---------------------PNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNT-I 276 (823)
T ss_pred ---------CCCCCchHHHhh---------------------hccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCcc-c
Confidence 013457886311 1124678899999999999999999 999999995 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChhHh
Q 007880 393 EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEM 472 (586)
Q Consensus 393 E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~~i 472 (586)
|+++++++|++|+++|||++|++++++.+.++++.+|+++++.+++||+++++|++||.||++|+++.|+. ...+++++
T Consensus 277 E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~ 355 (823)
T PLN03192 277 EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQL 355 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984 45788999
Q ss_pred hhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCC
Q 007880 473 ISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN 552 (586)
Q Consensus 473 l~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~ 552 (586)
++.||++||.+|..+++.+.++++|+|++++++++.+++..++++.|.|||.|+.+||.++++|||.+|+|++.....+.
T Consensus 356 l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~ 435 (823)
T PLN03192 356 IDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEK 435 (823)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997633333
Q ss_pred cEEEEEeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 553 IKSCCMLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 553 ~~~i~~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
...+..+++|++|||++.+...|.+.+..+...|
T Consensus 436 e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s 469 (823)
T PLN03192 436 ERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLS 469 (823)
T ss_pred ceeeEEccCCCEecchHHhcCCCCCCeEEEcccE
Confidence 4556899999999999988888888887776544
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-64 Score=507.68 Aligned_cols=380 Identities=20% Similarity=0.329 Sum_probs=321.0
Q ss_pred HHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHhhheeEEeecCccccccccccCCCCCC
Q 007880 93 LLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPR 172 (586)
Q Consensus 93 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~~d~~~~ 172 (586)
.+.++|++++++.++.|+-+ .+.+...|..+|+++|++|++|++++++|||+ ++|.+| .
T Consensus 4 s~~vLYN~~~li~r~~F~di---------~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyl------eqGllV-~----- 62 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDI---------QSSYLENWLPLDYLFDFVYLLDIIVRSRTGYL------EQGLLV-K----- 62 (536)
T ss_pred EEehHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH------hcCeee-h-----
Confidence 45678999988887665432 22234567899999999999999999999996 679999 5
Q ss_pred CCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 007880 173 SGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLS 252 (586)
Q Consensus 173 ~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~ll~~~~l~~rl~rl~Rl~~l~~~l~~~~ 252 (586)
|-++.++||+.| ..|.+|++|++|+|+++++.... . +. +++|++|++|+..++.+-+.++
T Consensus 63 ---~~~Kl~~hY~~s-~~f~lD~l~liP~D~l~~~~~~~------~------~~----r~nRllk~yRl~~F~~rTetrT 122 (536)
T KOG0500|consen 63 ---DTSKLRKHYVHS-TQFKLDVLSLIPLDLLLFKDGSA------S------LE----RLNRLLKIYRLFEFFDRTETRT 122 (536)
T ss_pred ---hhHHHHHHHHHh-hhhhhhhhhhcchhHHhhcCCcc------h------HH----HHHHHHHHHHHHHHHHHhcccc
Confidence 578999999985 89999999999999997653111 1 11 1346778899988888877765
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhcCCCcccccccCCCcccCcccccccccchhhhh
Q 007880 253 GYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAE 332 (586)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~~y~~~~~~~~~~~~sW~~ 332 (586)
.+ +++++ +..++...++++||.||+||+++.. +++ ..++|..
T Consensus 123 ~~--Pn~fr-i~~lv~~~~ilfHWNaClYf~iS~~--------------------------~g~---------~~d~wvY 164 (536)
T KOG0500|consen 123 TY--PNAFR-ISKLVHYCLILFHWNACLYFLISKA--------------------------IGF---------TTDDWVY 164 (536)
T ss_pred CC--chHHH-HHHHHHHHHHHHHHhhHHHHhhhHh--------------------------cCc---------ccccccc
Confidence 54 66664 5555556678999999999999752 233 3445877
Q ss_pred ccccccccccCCCCCcccchhhhhhhhccchhhhHHHHHHHHhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 007880 333 NKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLI 412 (586)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~slYwa~~TmtTyGDi~p~t~~~E~i~~i~~mi~G~~~fa~ii 412 (586)
.+-.. ..++.+ ..+++.++|+.|+||+..||||.|+.+|+.+..|.+|.++-.++|+++||.++
T Consensus 165 ~~i~d---------~~~~~c-------~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIv 228 (536)
T KOG0500|consen 165 PKIND---------PEFATC-------DAGNLTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIV 228 (536)
T ss_pred CCccC---------cccccc-------chhHHHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhh
Confidence 43110 011110 23457899999999999999999997655435999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHHHHHH
Q 007880 413 GNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDL 492 (586)
Q Consensus 413 g~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~ 492 (586)
|+|+++++++++.+.+|+++||.+++||+.+++|+.|+.||.+||+|.|.+++..||+++++.||+.||.+|+.+++.+.
T Consensus 229 G~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dT 308 (536)
T KOG0500|consen 229 GNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDT 308 (536)
T ss_pred ccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 493 VRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 493 l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
|+++++|+++.+.++.+++.++++++|+|||+|+++||.+.+||+|.+|.++|. .++|.++...+++|++|||++
T Consensus 309 LkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv--~dDg~t~~~~L~~G~~FGEis 383 (536)
T KOG0500|consen 309 LKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVV--ADDGVTVFVTLKAGSVFGEIS 383 (536)
T ss_pred HHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEE--ecCCcEEEEEecCCceeeeeE
Confidence 999999999999999999999999999999999999999999999999999995 478888899999999999997
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-62 Score=496.38 Aligned_cols=412 Identities=19% Similarity=0.353 Sum_probs=339.6
Q ss_pred CcccCCCChhHHhhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHhhheeEEee
Q 007880 75 GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAA 154 (586)
Q Consensus 75 ~~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t~y~~ 154 (586)
+.+|..++.|+..||.+++++.+|+++++|+-..|-.- ......|.++|.++|++|++||+|||+|.|+.
T Consensus 207 PHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk----------~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVG 276 (971)
T KOG0501|consen 207 PHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNK----------QRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVG 276 (971)
T ss_pred CeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccc----------ccCceeEEEecchhhhhhhhhhhhhcceeeec
Confidence 56899999999999999999999999999987655211 11123566899999999999999999999997
Q ss_pred cCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhccccccccchHHHHHHHHHHHHHHhH
Q 007880 155 YGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQY 234 (586)
Q Consensus 155 ~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~ll~~~~l~~r 234 (586)
| .|++| . |||.|+.+|+ |+||++|++|++|+|.+..+--.+. ++-..+..|+.+
T Consensus 277 P-----gGEVv-s--------dPkvIRmNYl--KsWFvIDLLSCLPYDi~naF~~~de-----gI~SLFSaLKVV----- 330 (971)
T KOG0501|consen 277 P-----GGEVV-S--------DPKVIRMNYL--KSWFVIDLLSCLPYDIFNAFERDDE-----GIGSLFSALKVV----- 330 (971)
T ss_pred C-----CCcee-c--------ChhHHhHHHH--HHHHHHHHHhcccHHHHHHhhcccc-----cHHHHHHHHHHH-----
Confidence 6 46777 5 5999999999 9999999999999998864321111 222233334332
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhcCCCcccccccCCCc
Q 007880 235 LPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPI 314 (586)
Q Consensus 235 l~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~ 314 (586)
||+|+.|..+++.....| ..+ .+++++++|++++||+||+||.||..+.- +
T Consensus 331 --RLLRLGRVaRKLD~YlEY--GAA--~LvLLlC~y~lvAHWlACiWysIGd~ev~------------------~----- 381 (971)
T KOG0501|consen 331 --RLLRLGRVARKLDHYLEY--GAA--VLVLLLCVYGLVAHWLACIWYSIGDYEVR------------------D----- 381 (971)
T ss_pred --HHHHHHHHHHHHHHHHHh--hHH--HHHHHHHHHHHHHHHHHHhheeccchhee------------------c-----
Confidence 444444444455433232 444 36777888999999999999999975421 0
Q ss_pred ccCccccccc-ccchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhHHHHHHHHhhhhccc--cccccccccc
Q 007880 315 YYGTTDMVRD-RARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEW 391 (586)
Q Consensus 315 ~y~~~~~~~~-~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~slYwa~~TmtT--yGDi~p~t~~ 391 (586)
+..+ ...++|+-+... +...+|+|... ..-+....+|....|+.|+||.++.||| +|+|.|.|+
T Consensus 382 ------~~~n~i~~dsWL~kLa~-----~~~tpY~~~~s-~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD- 448 (971)
T KOG0501|consen 382 ------EMDNTIQPDSWLWKLAN-----DIGTPYNYNLS-NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTD- 448 (971)
T ss_pred ------ccccccccchHHHHHHh-----hcCCCceeccC-CCceeecCCcccceehhhhhhhhhhhhcccccccCCCcc-
Confidence 0111 245688875433 22445555411 1122356778889999999999999999 999999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChhH
Q 007880 392 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECE 471 (586)
Q Consensus 392 ~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~~ 471 (586)
.|++|++.+|++|.++||.++|+++.|++++.+...+|++.++.+.+||+-+.+|+.|.+||.+|.--.|...+|.|.++
T Consensus 449 ~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeK 528 (971)
T KOG0501|consen 449 NEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEK 528 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecC
Q 007880 472 MISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN 551 (586)
Q Consensus 472 il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~ 551 (586)
+|+-.|..+|.+|..|++++.++..|.|+-.++.+++.|+..++..+..|||.|+..||..|.+.||.+|+.+|.+
T Consensus 529 VL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ---- 604 (971)
T KOG0501|consen 529 VLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ---- 604 (971)
T ss_pred HhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CcEEEEEeCCCCEEeec
Q 007880 552 NIKSCCMLGPGNFSGIW 568 (586)
Q Consensus 552 ~~~~i~~l~~G~~FGE~ 568 (586)
..+++++|++||+||+.
T Consensus 605 DDEVVAILGKGDVFGD~ 621 (971)
T KOG0501|consen 605 DDEVVAILGKGDVFGDE 621 (971)
T ss_pred cCcEEEEeecCccchhH
Confidence 44678999999999987
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8e-53 Score=432.11 Aligned_cols=386 Identities=18% Similarity=0.319 Sum_probs=325.5
Q ss_pred cCcccCCCC-hhHHhhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHh-hheeE
Q 007880 74 FGQVLDPRA-KWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWL-QLKMT 151 (586)
Q Consensus 74 ~~~vi~P~s-~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil-~f~t~ 151 (586)
++..|||.. ++...|-.++.++..+++|++|+++.||.-..++ .-.|.+.|++||+++++||++ +-|.-
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~ 286 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQ 286 (815)
T ss_pred CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhe
Confidence 356899998 9999999999999999999999999888543321 125779999999999999974 55556
Q ss_pred EeecCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhccccccccchHHHHHHHHHHHHH
Q 007880 152 KAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFL 231 (586)
Q Consensus 152 y~~~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~ll~~~~l 231 (586)
|. -.|.+| . |.+...+||++ +..|-+|++|++|+|++|+.+.... ++ +
T Consensus 287 fv------rgG~~i-k--------~kndtrk~Yl~-sr~FklDllsiLPldllY~~~G~~p------------~w----R 334 (815)
T KOG0499|consen 287 FV------RGGDII-K--------DKNDTRKHYLT-SRKFKLDLLSILPLDLLYLFFGFNP------------MW----R 334 (815)
T ss_pred ee------eCceEE-E--------echHHHHHHHH-hhhhhhhHHhhhhHHHHHHHhccch------------hh----h
Confidence 64 447777 5 47899999998 4889999999999999987653321 11 3
Q ss_pred HhHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhcCCCcccccccC
Q 007880 232 FQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCK 311 (586)
Q Consensus 232 ~~rl~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~ 311 (586)
+.|++|+.-++.+++.+++.... ..++ +++..+-.+++++|+.||+||+.+.++
T Consensus 335 ~~R~lK~~sF~e~~~~Le~i~s~--~y~~-RV~rT~~YmlyilHinacvYY~~Sayq----------------------- 388 (815)
T KOG0499|consen 335 ANRMLKYTSFFEFNHHLESIMSK--AYIY-RVIRTTGYLLYILHINACVYYWASAYQ----------------------- 388 (815)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcc--hhhh-hhHHHHHHHHHHHhhhHHHHHHHHhhc-----------------------
Confidence 33555666666666666654221 1122 244445555679999999999976432
Q ss_pred CCcccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhHHHHHHHHhhhhccccccc-ccccc
Q 007880 312 EPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNL-ESTTE 390 (586)
Q Consensus 312 ~~~~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~slYwa~~TmtTyGDi-~p~t~ 390 (586)
++ ..+-|+.+.. ...|++|+|||+-|+||.|.. .|.|
T Consensus 389 ---gl---------G~~rWVydg~-----------------------------Gn~YiRCyyfa~kt~~tiG~~P~P~~- 426 (815)
T KOG0499|consen 389 ---GL---------GTTRWVYDGE-----------------------------GNEYIRCYYFAVKTLITIGGLPEPQT- 426 (815)
T ss_pred ---cc---------ccceeEEcCC-----------------------------CCceeeehhhHHHHHHHhcCCCCcch-
Confidence 12 3456775321 257999999999999997775 5666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChh
Q 007880 391 WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDEC 470 (586)
Q Consensus 391 ~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~ 470 (586)
..|++|..+--+.|+++||.+||.|-.++++.++.++.|++.|+..-.||+..+||+++|+||+.+|+|.|..++..||.
T Consensus 427 ~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs 506 (815)
T KOG0499|consen 427 LFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDES 506 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEec
Q 007880 471 EMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILH 550 (586)
Q Consensus 471 ~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~ 550 (586)
+++..||.+||.+++..++..+|.++.+|++|+...+.+++.+++...|.|||.|+++||.|.+||+|..|.|+|.. +.
T Consensus 507 ~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-Gp 585 (815)
T KOG0499|consen 507 DLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-GP 585 (815)
T ss_pred HHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975 56
Q ss_pred CCcEEEEEeCCCCEEeecC
Q 007880 551 NNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 551 ~~~~~i~~l~~G~~FGE~~ 569 (586)
+|.+++.+|.+|++|||++
T Consensus 586 ~~~~Vl~tL~~GsVFGEIS 604 (815)
T KOG0499|consen 586 DGTKVLVTLKAGSVFGEIS 604 (815)
T ss_pred CCCEEEEEecccceeeeee
Confidence 7888899999999999998
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.8e-29 Score=255.11 Aligned_cols=304 Identities=16% Similarity=0.214 Sum_probs=194.7
Q ss_pred hHHHHHHHHhhheeecccCCCCchhhHHhhhhhhHHHhhhhhhHHHHhcCCCcccccccccCCccccCCCcCcccCCCCh
Q 007880 4 TEQEISRAARVQYYTTTDDDSDDKEEEEEEMVDEEEQEEEEGEVEERCKNGRRRDMFSGICGRRRRSNWSFGQVLDPRAK 83 (586)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~w~~~~vi~P~s~ 83 (586)
.|+.+++||+.+|..+.|+.++..+.++ .++++..+.+++... ...+++.|++.| ..+.+|+|+
T Consensus 125 ~~~~le~CC~~~~~~~~ee~~e~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~r~rlW--~~~E~P~SS 188 (477)
T KOG3713|consen 125 DEAHLESCCWMRYRQRREELLEELDRPD---PDEEELREREGPEFD-----------GGRCGRLRRRLW--ALLENPGSS 188 (477)
T ss_pred ChhhhhHHhHHHHhhcHHHHhhhhcccC---chhhhHHhhcccccc-----------CCChhhHHHHHH--HHhcCCCcc
Confidence 3678999999999988854444433221 111111111111111 122466788899 889999977
Q ss_pred hHHhhhHHHHHHHHHHHhhh----chhe-eeeeccCcceee--------eecCcchhhhHHHHHHHHHHHHHHHHhhhee
Q 007880 84 WVQEWNRVFLLVCATGLFVD----PLFF-YALSISETCMCL--------FVDGWFAITVTALRCMTDLLHVWNMWLQLKM 150 (586)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~----P~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t 150 (586)
.... +++++..+|+. -+.+ ..|.+..+..-- .....-...+.++|++|.+||.+++++||
T Consensus 189 ~~Ak-----~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~-- 261 (477)
T KOG3713|consen 189 LAAK-----VFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWFTFEYLLRF-- 261 (477)
T ss_pred hHHH-----HHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHH--
Confidence 6554 22222222221 1111 122221110000 00111234578999999999999999999
Q ss_pred EEeec-CccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhccccccc-cchHH-HHHHHHH
Q 007880 151 TKAAY-GVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLE-RGSIT-LVMTVFL 227 (586)
Q Consensus 151 ~y~~~-~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~-~~~~~-~~~~ll~ 227 (586)
...| +..+.++.++ +||++|++||.+- +....... ..+.. +....+|
T Consensus 262 -~~~P~k~~F~k~pLN--------------------------IIDllAIlPFYie---lll~~~~~~~~~~l~~~~~vvr 311 (477)
T KOG3713|consen 262 -LVAPNKLEFFKSPLN--------------------------IIDLLAILPFYLE---LLLTLFGGESLKELENAGLVVR 311 (477)
T ss_pred -HcCchHHHHHhCcch--------------------------HHHHHHHHHHHHH---HHHHHhccchHHHHhhhhhhHH
Confidence 4445 4444444444 9999999999442 22221111 11111 1112333
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhcCCCcccc
Q 007880 228 IMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRL 307 (586)
Q Consensus 228 ~~~l~~rl~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~~~~~~~c~~~~~c~~~~ 307 (586)
+++++ |++|++|+.|++..++.. +...+...+.+.++++++.+.+-+||.+-|++=. +
T Consensus 312 vlR~l-RI~RI~KLaRhS~GLr~l-g~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek---~----------------- 369 (477)
T KOG3713|consen 312 VLRVL-RILRIFKLARHSTGLRTL-GLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEK---D----------------- 369 (477)
T ss_pred HHHHH-HHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c-----------------
Confidence 33222 577888888999899887 6666777778888888888888888888887411 0
Q ss_pred cccCCCcccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhHHHHHHHHhhhhccc--cccc
Q 007880 308 LSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNL 385 (586)
Q Consensus 308 l~c~~~~~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~slYwa~~TmtT--yGDi 385 (586)
.+.+.+...++++|||++|||| |||+
T Consensus 370 ----------------------------------------------------~~~~~FtSIPa~~WWaiVTMTTVGYGDm 397 (477)
T KOG3713|consen 370 ----------------------------------------------------EPDTKFTSIPAGFWWAVVTMTTVGYGDM 397 (477)
T ss_pred ----------------------------------------------------CCCCCCccccchhheeeEEEeeecccCc
Confidence 1122257788999999999999 9999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007880 386 ESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRN 435 (586)
Q Consensus 386 ~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~ 435 (586)
+|.| +.+++++..+++.|+++.|++|..|.+-|+..++..++.++....
T Consensus 398 ~P~T-~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~ 446 (477)
T KOG3713|consen 398 VPVT-VLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKR 446 (477)
T ss_pred cccc-cchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhh
Confidence 9999 699999999999999999999999999999988877766655433
No 7
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.1e-19 Score=178.62 Aligned_cols=204 Identities=11% Similarity=0.166 Sum_probs=136.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhheeEEeecCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhh
Q 007880 126 AITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIV 205 (586)
Q Consensus 126 ~~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~ 205 (586)
...+++++.+|.+||.+++++||..+ |+ ...-+++-++ ++|++|++|+..-.
T Consensus 252 ~dPFFiVEt~CIiWFtfEllvRf~aC---Ps--------------------K~~Ff~nimN-----iIDiVaI~PyFitl 303 (507)
T KOG1545|consen 252 TDPFFIVETLCIIWFTFELLVRFFAC---PS--------------------KATFFRNIMN-----IIDIVAIIPYFITL 303 (507)
T ss_pred CCchHhHHHHHHHHHhHHHHHHHhcC---cc--------------------HHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 34567999999999999999999443 41 1123344443 99999999984322
Q ss_pred hhhcccccccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 206 LWVVIPALLER--GSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYL 283 (586)
Q Consensus 206 ~~~~~~~~~~~--~~~~~~~~ll~~~~l~~rl~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~ 283 (586)
..-......++ +.-.-.+-+||.+++. |+.|++++.|+.+.+|-+ +...+..++.+.++++++++..-+++...|+
T Consensus 304 gtela~q~g~g~~gqqaMSlAILRViRLV-RVFRIFKLSRHSkGLQIL-GqTl~aSmrElgLLIFFlfIgviLFsSavYF 381 (507)
T KOG1545|consen 304 GTELAEQQGGGGQGQQAMSLAILRVIRLV-RVFRIFKLSRHSKGLQIL-GQTLRASMRELGLLIFFLFIGVILFSSAVYF 381 (507)
T ss_pred hHHHHHhhcCCccchhhhhHHHHHHHHHH-HHhhheeeccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhceeee
Confidence 11111111111 1222334556666544 466777777777777765 5555666777766665555544444444443
Q ss_pred HhhhhhhhhHHHhhhhcCCCcccccccCCCcccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccch
Q 007880 284 LGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVS 363 (586)
Q Consensus 284 i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s 363 (586)
. +. ....+
T Consensus 382 A---Ea---------------------------------------------------------------------de~~S 389 (507)
T KOG1545|consen 382 A---EA---------------------------------------------------------------------DEPES 389 (507)
T ss_pred e---ec---------------------------------------------------------------------CCCcc
Confidence 1 00 01233
Q ss_pred hhhHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 007880 364 RLEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLK 432 (586)
Q Consensus 364 ~~~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~ 432 (586)
-+.....|+|||++|||| |||+.|.| +.++++..+|.|.|++-.|..+..|.+-+...+.+..+-.++
T Consensus 390 ~F~SIPdaFWwavVTMTTVGYGDm~P~T-vgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee~ 459 (507)
T KOG1545|consen 390 HFSSIPDAFWWAVVTMTTVGYGDMVPVT-VGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQ 459 (507)
T ss_pred CCCcCcccceEEEEEEEeeccccceecc-cCceehhhHHhhhhheEecccccEEEecccceeeccccchhh
Confidence 456778899999999999 99999999 799999999999999999999998888887777666655443
No 8
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1e-17 Score=166.05 Aligned_cols=188 Identities=15% Similarity=0.226 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeEEeecCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhh
Q 007880 128 TVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLW 207 (586)
Q Consensus 128 ~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~ 207 (586)
.++.+|..|.++|..+.+||+..+ | ++-+ ..+-+.| ++|+++++|+ |+.
T Consensus 228 aFFclDTACVmIFT~EYlLRL~aA---P--------------------sR~r-F~RSvMS----iIDVvAIlPY---Yig 276 (632)
T KOG4390|consen 228 AFFCLDTACVMIFTGEYLLRLFAA---P--------------------SRYR-FLRSVMS----IIDVVAILPY---YIG 276 (632)
T ss_pred eeEEecceeEEEeeHHHHHHHHcC---c--------------------hHHH-HHHHHHH----HHHHhhhhhh---heE
Confidence 455688899999999999999554 2 0111 2223334 9999999999 444
Q ss_pred hccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007880 208 VVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQ 287 (586)
Q Consensus 208 ~~~~~~~~~~~~~~~~~ll~~~~l~~rl~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~ 287 (586)
++.+...+-+++...++++ |++|++++.|+.+.++-+ +|..+++-..+..+++.+.+.+-++|.+.|+.-.
T Consensus 277 Lv~t~N~DVSGaFVTLRVF-------RVFRIFKFSRHSQGLRIL-GYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK- 347 (632)
T KOG4390|consen 277 LVMTDNEDVSGAFVTLRVF-------RVFRIFKFSRHSQGLRIL-GYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK- 347 (632)
T ss_pred EEecCCccccceeEEEEee-------eeeeeeeecccccccchh-hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc-
Confidence 4444322333333333333 344666677777777655 8877777666777777777777778887777210
Q ss_pred hhhhhHHHhhhhcCCCcccccccCCCcccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhH
Q 007880 288 RSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEK 367 (586)
Q Consensus 288 ~~~~~~~~~c~~~~~c~~~~l~c~~~~~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~ 367 (586)
..+++.+..
T Consensus 348 -----------------------------------------------------------------------g~~at~FTs 356 (632)
T KOG4390|consen 348 -----------------------------------------------------------------------GSSATKFTS 356 (632)
T ss_pred -----------------------------------------------------------------------ccccccccc
Confidence 023455677
Q ss_pred HHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 007880 368 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 427 (586)
Q Consensus 368 Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~ 427 (586)
..++||+.++|||| |||++|.| +++++|..++.+.|+++.|..+..|.+-++.++.+.+
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~T-IaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQ 417 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPST-IAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQ 417 (632)
T ss_pred CcHhHhhheeeeeeccccccchHH-HHHHHhhhhhcccceEEEeccccEEEechhHHHhhhh
Confidence 88999999999999 99999999 8999999999999999999988877777766654443
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.33 E-value=7.7e-12 Score=119.54 Aligned_cols=192 Identities=16% Similarity=0.324 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHhhheeEEeecCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhcc
Q 007880 131 ALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVI 210 (586)
Q Consensus 131 ~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~ 210 (586)
++|.+++++|.+|+++++++.. ++ +++|++ +.|.++|+++++|....+.....
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~------------------------~~--~~~y~~-~~~~~~d~~~~~~~~~~~~~~~~ 53 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALG------------------------FK--RRRYFR-SWWNWFDFISVIPSIVSVILRSY 53 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC------------------------CG---GCCCC-SHHHHHHHHHHHHHCCHHCCHCS
T ss_pred CChHHHHHHHHHHHHHHHHHhc------------------------cH--HHHHhc-Chhhccccccccccccccccccc
Confidence 4688999999999999995432 12 567775 47788999999999555322111
Q ss_pred ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007880 211 PALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSA 290 (586)
Q Consensus 211 ~~~~~~~~~~~~~~ll~~~~l~~rl~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~ 290 (586)
+ ..+.....++++++ |++|++|+.+..+.++....... .....+...++.++++.|++||+++.+......
T Consensus 54 ~----~~~~~~~~~~~~~l----~~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 54 G----SASAQSLLRIFRLL----RLLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp S------HHCHCHHHHHHH----HHHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred c----cccccceEEEEEee----ccccccccccccccccccccccc-cccccccccccccccccccccchhheecccccc
Confidence 1 10000112222222 22233333333332222211111 222334455556678899999999987653322
Q ss_pred hhHHHhhhhcCCCcccccccCCCcccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhHHHH
Q 007880 291 KCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILF 370 (586)
Q Consensus 291 ~~~~~~c~~~~~c~~~~l~c~~~~~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~ 370 (586)
.|+. ..+.. .+...+.+.++.|..
T Consensus 125 ~~~~---------------------------------~~~~~-----------------------~~~~~~~~~f~~~~~ 148 (200)
T PF00520_consen 125 SCCD---------------------------------PTWDS-----------------------ENDIYGYENFDSFGE 148 (200)
T ss_dssp ---------------------------------------SS---------------------------SSTHHHHSSHHH
T ss_pred cccc---------------------------------ccccc-----------------------ccccccccccccccc
Confidence 1100 00000 000123455688999
Q ss_pred HHHHhhhhccc--ccccccc-----ccchhHHHH-HHHHHHHHHHHHHHHHHH
Q 007880 371 PIFWGLMTLST--FGNLEST-----TEWLEVVFN-IIVLTSGLLLVTMLIGNI 415 (586)
Q Consensus 371 slYwa~~TmtT--yGDi~p~-----t~~~E~i~~-i~~mi~G~~~fa~iig~i 415 (586)
|+||++.++|+ +||+.|. + ..+.++. ++..+.+.++++.++|.|
T Consensus 149 s~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 149 SLYWLFQTMTGEGWGDVMPSCMSARS-WLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHTTTTCCCCHHHHHHTTS-TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCccccccccccccc-hhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999 8888886 5 5888888 667777779999998875
No 10
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.2e-11 Score=124.10 Aligned_cols=87 Identities=17% Similarity=0.352 Sum_probs=71.6
Q ss_pred hhHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 007880 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 442 (586)
Q Consensus 365 ~~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~ 442 (586)
+..|..|+||.+.|+|| |||.+|.| ...++++.++.++|+.+||..-|.+++=|+-.-++++ .=++|-++
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~T-WlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~-------RQKHf~rr 338 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQT-WLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH-------RQKHFNRR 338 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCccc-chhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH-------HHHHHHhh
Confidence 57899999999999999 99999999 7999999999999999999999999988754332221 11467778
Q ss_pred cCCChHHHHHHHHHHHH
Q 007880 443 RQLPQGFRQRVRNYERQ 459 (586)
Q Consensus 443 ~~lp~~L~~rV~~y~~~ 459 (586)
++.-..|.+-.-+||.-
T Consensus 339 r~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYAA 355 (654)
T ss_pred cchHHHHHHHHHHHHhc
Confidence 88878888777777763
No 11
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.00 E-value=8.7e-10 Score=114.91 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=87.5
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHc
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKR 443 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~ 443 (586)
-.|..|+|+.++||+| |||++..| ..+++|.++.++.|..+||-.+..|..++.+-++-.-+|+..-. ++
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t-~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-------kk 358 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKT-TLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-------KK 358 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehh-hhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-------Ce
Confidence 5699999999999999 99999999 59999999999999999999999999999877655444433210 00
Q ss_pred CC---ChHHHHHHHHHHH-HHHHHhcCCC-hhHhhhcCCchhHHHHHHHHHHHHHhcCCcccC
Q 007880 444 QL---PQGFRQRVRNYER-QRWAAMRGVD-ECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQH 501 (586)
Q Consensus 444 ~l---p~~L~~rV~~y~~-~~~~~~~~~~-~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~ 501 (586)
++ ..-.-+.|-.|++ +..+.....| |--+|...||.|..| .+++....++.+|++
T Consensus 359 hivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 359 HIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred eEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 00 0011223333333 2223233344 556788999999766 446677788888865
No 12
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=1.5e-09 Score=108.42 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=84.8
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
.+.+++.-+|++++++.+.++...|.+..+..|+.|+++|+.++.+|+|.+|+++|+. ++..+..+++|..|||+|
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv----~~~~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV----NGTYVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE----CCeEEeeeCCCCchhhhH
Confidence 4778889999999999999999999999999999999999999999999999999987 355789999999999999
Q ss_pred CCCCCccccceeeecc
Q 007880 570 GSRRCEICDTTFQVHV 585 (586)
Q Consensus 570 ~~~~~~~~at~~~~~~ 585 (586)
.....|++||.-+...
T Consensus 197 Lmyn~PRaATv~a~t~ 212 (368)
T KOG1113|consen 197 LMYNPPRAATVVAKSL 212 (368)
T ss_pred hhhCCCcccceeeccc
Confidence 9999999998877654
No 13
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=98.86 E-value=1.5e-09 Score=112.89 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=94.9
Q ss_pred CCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE
Q 007880 476 LPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS 555 (586)
Q Consensus 476 Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~ 555 (586)
||..-|..=..++.++.|.+..|+++++...+.+++..|.+..|.+|..|+++||.++.+|.+.+|+++|.+ +.+.
T Consensus 139 l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~----~g~l 214 (732)
T KOG0614|consen 139 LPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR----EGKL 214 (732)
T ss_pred cccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee----CCee
Confidence 444444444567788999999999999999999999999999999999999999999999999999999976 5567
Q ss_pred EEEeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 556 CCMLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 556 i~~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
++.+++|..|||+|-+++|++.|+..+...|
T Consensus 215 l~~m~~gtvFGELAILynctRtAsV~alt~~ 245 (732)
T KOG0614|consen 215 LGKMGAGTVFGELAILYNCTRTASVRALTDV 245 (732)
T ss_pred eeccCCchhhhHHHHHhCCcchhhhhhhhhh
Confidence 8999999999999999999999998876654
No 14
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=98.85 E-value=1.9e-08 Score=86.89 Aligned_cols=74 Identities=26% Similarity=0.520 Sum_probs=66.6
Q ss_pred cccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEEeecCCC
Q 007880 498 LFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGIWPGS 571 (586)
Q Consensus 498 lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~FGE~~~~ 571 (586)
+|++++++.+..++..++...|.+|++|+++|+..+.+|||.+|.+.++....+|.. .+..+++|++||+.+..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~ 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALL 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhc
Confidence 578999999999999999999999999999999999999999999999876555554 45899999999999855
No 15
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=98.84 E-value=9.6e-09 Score=101.80 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=83.0
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
.+.++.+|+|+.++++.+..++...+.+.|.+|+.|+++|+..+.+|+|.+|.|.++...+++...+..+++|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 35789999999999999999999999999999999999999999999999999999876555555668999999999998
Q ss_pred CCCCCccccceeeeccC
Q 007880 570 GSRRCEICDTTFQVHVC 586 (586)
Q Consensus 570 ~~~~~~~~at~~~~~~~ 586 (586)
.....+...+..++..|
T Consensus 86 ~~~~~~~~~~~~A~~~~ 102 (236)
T PRK09392 86 VVLDAPYLMSARTLTRS 102 (236)
T ss_pred HhCCCCCceEEEEcCce
Confidence 66656666655555443
No 16
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.82 E-value=2.5e-08 Score=107.13 Aligned_cols=94 Identities=20% Similarity=0.330 Sum_probs=82.4
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
.+.++++|+|++++++.+..++..++.+.|.+|++|+++||..+.+|+|.+|.|+++....+|...+..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 4678899999999999999999999999999999999999999999999999999988777776667899999999985
Q ss_pred CCCCCccccceeeecc
Q 007880 570 GSRRCEICDTTFQVHV 585 (586)
Q Consensus 570 ~~~~~~~~at~~~~~~ 585 (586)
+.+.+++++..+...
T Consensus 86 -l~~~~~~~~~~A~~d 100 (413)
T PLN02868 86 -LSGSVHSADVVAVSE 100 (413)
T ss_pred -hCCCCcccEEEECCC
Confidence 566777776665543
No 17
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.80 E-value=3e-08 Score=80.56 Aligned_cols=54 Identities=19% Similarity=0.480 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLH 420 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~ 420 (586)
..|..|+||+++|+|| |||+.|.++ .+++++++.+++|+.++++.++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~-~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTP-AGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588899999999999 999999985 99999999999999999999999999875
No 18
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=98.74 E-value=4.4e-08 Score=84.13 Aligned_cols=86 Identities=27% Similarity=0.441 Sum_probs=72.2
Q ss_pred cccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEEeecCCCCCCcc
Q 007880 498 LFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGIWPGSRRCEI 576 (586)
Q Consensus 498 lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~FGE~~~~~~~~~ 576 (586)
+|+.++++.+..++..++...+.+|+.|+.+|+..+.+|+|.+|.+.+.....+|++ .+..+.+|++||+.+.....+.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 578899999999999999999999999999999999999999999999886666554 4478999999999986545555
Q ss_pred ccceeee
Q 007880 577 CDTTFQV 583 (586)
Q Consensus 577 ~at~~~~ 583 (586)
..+..+.
T Consensus 81 ~~~~~a~ 87 (115)
T cd00038 81 SATVRAL 87 (115)
T ss_pred CceEEEc
Confidence 4444443
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=98.71 E-value=6.6e-09 Score=108.19 Aligned_cols=96 Identities=19% Similarity=0.327 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCC--cEEEEEeCCCCE
Q 007880 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN--IKSCCMLGPGNF 564 (586)
Q Consensus 487 ~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~--~~~i~~l~~G~~ 564 (586)
.-+.++|+++|+|+++|++.+.+++..++...|..|++|+++|+.++.+|+|.+|+|.|.+..+.. ...++.++.|++
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 346689999999999999999999999999999999999999999999999999999997754332 234689999999
Q ss_pred EeecCCCCCCccccceee
Q 007880 565 SGIWPGSRRCEICDTTFQ 582 (586)
Q Consensus 565 FGE~~~~~~~~~~at~~~ 582 (586)
|||-+++-.--+.|..++
T Consensus 348 FGE~al~~edvRtAniia 365 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIA 365 (732)
T ss_pred hhHHHhhccCccchhhhc
Confidence 999997665555554443
No 20
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=98.55 E-value=4.2e-07 Score=88.24 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=69.9
Q ss_pred cCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCC-ccc
Q 007880 500 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRC-EIC 577 (586)
Q Consensus 500 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~-~~~ 577 (586)
+.++++.+..++..++...|.+|+.|+.+|+..+.+|+|.+|.+.++....+|++. +..+++|++||+.+..... +..
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 55789999999999999999999999999999999999999999998766666644 4789999999999855432 444
Q ss_pred cceeee
Q 007880 578 DTTFQV 583 (586)
Q Consensus 578 at~~~~ 583 (586)
.+..+.
T Consensus 86 ~~~~a~ 91 (211)
T PRK11753 86 AWVRAK 91 (211)
T ss_pred EEEEEc
Confidence 444443
No 21
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.54 E-value=4.5e-08 Score=97.95 Aligned_cols=95 Identities=14% Similarity=0.270 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 487 ~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+|.+.|+++|+++.+.......++..+.+..|.+|+.|..+|+.++.+|+|.+|+|.+.... +| .++ .++.|++||
T Consensus 236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~-v~v-kl~~~dyfg 312 (368)
T KOG1113|consen 236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG-VEV-KLKKGDYFG 312 (368)
T ss_pred hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC-eEE-Eechhhhcc
Confidence 457789999999999999999999999999999999999999999999999999999997643 33 444 999999999
Q ss_pred ecCCCCCCccccceeeec
Q 007880 567 IWPGSRRCEICDTTFQVH 584 (586)
Q Consensus 567 E~~~~~~~~~~at~~~~~ 584 (586)
|++.+..-++.|+.++.+
T Consensus 313 e~al~~~~pr~Atv~a~~ 330 (368)
T KOG1113|consen 313 ELALLKNLPRAATVVAKG 330 (368)
T ss_pred hHHHHhhchhhceeeccC
Confidence 999998888888887754
No 22
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=98.50 E-value=4.2e-07 Score=87.77 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=75.7
Q ss_pred hcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEEeecCCCC
Q 007880 494 RQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSGIWPGSR 572 (586)
Q Consensus 494 ~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~FGE~~~~~ 572 (586)
...+.|...+......+....+...+.+|+.|+.+||.++.+|+|.+|.+.++....+|++.+ ..+++|++||+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 456677777888888888999999999999999999999999999999999998877776554 7899999999999665
Q ss_pred CCccccceeeec
Q 007880 573 RCEICDTTFQVH 584 (586)
Q Consensus 573 ~~~~~at~~~~~ 584 (586)
..++.++..+..
T Consensus 83 ~~~~~~~~~a~~ 94 (214)
T COG0664 83 GDPRSASAVALT 94 (214)
T ss_pred CCCccceEEEcc
Confidence 545655555543
No 23
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=98.40 E-value=6.2e-07 Score=88.28 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=63.7
Q ss_pred HHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEEeecCCCCCCccccceeeec
Q 007880 508 ENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSGIWPGSRRCEICDTTFQVH 584 (586)
Q Consensus 508 ~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~FGE~~~~~~~~~~at~~~~~ 584 (586)
..++...+...|.+|+.|+.+||..+.+|+|.+|.|.++....+|++.+ ..+.+|++||+.+....-+...+..+..
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~ 102 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIE 102 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEec
Confidence 4577788899999999999999999999999999999998777777654 7889999999998655555555555544
No 24
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=98.30 E-value=7.9e-07 Score=73.41 Aligned_cols=68 Identities=25% Similarity=0.397 Sum_probs=55.6
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCCccccceeee
Q 007880 516 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRCEICDTTFQV 583 (586)
Q Consensus 516 ~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~~~~at~~~~ 583 (586)
.+.|.+|++|+++|+..+.+|||.+|.+.+.....++... +..+++|++||+.+.....++..+..+.
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~ 69 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIAL 69 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEES
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEc
Confidence 3679999999999999999999999999999877777644 6899999999999865555555555443
No 25
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=98.30 E-value=3e-06 Score=83.87 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=66.5
Q ss_pred HhcCCcccCCCHHHHHHhhcccEE-EEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEEeecCC
Q 007880 493 VRQVPLFQHMDDLVLENICDRVKS-LIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSGIWPG 570 (586)
Q Consensus 493 l~~~~lF~~~~~~~l~~l~~~l~~-~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~FGE~~~ 570 (586)
+++.+.|-.++++.+..|....+. ..|.+|+.|+++||..+.+|+|.+|.|.++...++|++.+ ..+.+|++||+.+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 445555657999999999988864 6799999999999999999999999999998777777655 67799999998764
No 26
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.20 E-value=4.7e-06 Score=80.35 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=56.4
Q ss_pred ccEEEEecCCCEEEcCCC--ccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEEeecCCCCCCccccceeeec
Q 007880 513 RVKSLIFTKGEVITKEGD--PVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSGIWPGSRRCEICDTTFQVH 584 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd--~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~FGE~~~~~~~~~~at~~~~~ 584 (586)
..+...|.+|++|+++|| ..+.+|+|.+|.|.++....+|++.+ ..+++|++||+.+.. ..+++.+..++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~ 78 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVT 78 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcC
Confidence 467889999999999999 77999999999999998878887665 677999999997633 334444444443
No 27
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.10 E-value=1e-05 Score=85.97 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=72.6
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
.+++.+.|.|+.++++.+.+|...+...+|.+||+|+..|.+.+.+|+|.+|.|++.. ++.+++..+..|+.||-.+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~---~~g~v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS---DGGEVLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc---CCCeeeeeeccCccccchh
Confidence 4788999999999999999999999999999999999999999999999999999864 4555889999999999997
Q ss_pred CCC
Q 007880 570 GSR 572 (586)
Q Consensus 570 ~~~ 572 (586)
...
T Consensus 83 l~~ 85 (610)
T COG2905 83 LFT 85 (610)
T ss_pred hcc
Confidence 433
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.03 E-value=7.4e-05 Score=79.22 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=48.0
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 419 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il 419 (586)
..+..|+||+++|+|| |||+.|.|. ..++++++++++|+.+|++.++.+..-+
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~-~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSE-SARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999 999999994 9999999999999999999999887644
No 29
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.97 E-value=6.6e-06 Score=65.45 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=32.0
Q ss_pred ccCCCChhHHhhhHHHHHHHHHHHhhhchheeee
Q 007880 77 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYAL 110 (586)
Q Consensus 77 vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~ 110 (586)
||||.|++|.+||.+++++++++++++|+.+.|.
T Consensus 38 IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 38 IIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred EEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 9999999999999999999999999999987663
No 30
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=97.87 E-value=5.2e-05 Score=74.83 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=54.3
Q ss_pred HHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEEeecC
Q 007880 508 ENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSGIWP 569 (586)
Q Consensus 508 ~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~FGE~~ 569 (586)
..+....+...|.+|+.|+.+||.++.+|+|.+|.|.++....+|++.+ ..+.+|++||+.+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~ 94 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES 94 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC
Confidence 4556778899999999999999999999999999999998777777654 6789999999865
No 31
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=97.81 E-value=4.8e-05 Score=72.61 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=46.8
Q ss_pred CCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCCc
Q 007880 522 GEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRCE 575 (586)
Q Consensus 522 ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~~ 575 (586)
|+.|+++||..+.+|+|.+|.|.++...++|++. +..+++|++||+.+.....+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~ 55 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHR 55 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCC
Confidence 7899999999999999999999999877777765 48899999999998665443
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.0014 Score=68.25 Aligned_cols=88 Identities=16% Similarity=0.238 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 007880 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 442 (586)
Q Consensus 365 ~~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~ 442 (586)
...|+.|+|....|+-+ ||||+|.|+ -++.++++.-++|.++.|.+++.|+.-+.-...+ ..+++||-+
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~Ty-cGr~v~l~tGivGa~~sallvAvisRKLeLt~aE--------KhVhNFMmD 355 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTY-CGRGVALLTGIVGAGCSSLLVAVIARKLELTKAE--------KHVHNFMMD 355 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCcc-ccchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 35688899988888877 999999995 9999999999999999999999998776443332 345666666
Q ss_pred cCCChHHHHHHHHHHHHHH
Q 007880 443 RQLPQGFRQRVRNYERQRW 461 (586)
Q Consensus 443 ~~lp~~L~~rV~~y~~~~~ 461 (586)
.++-+++++-..+=++..|
T Consensus 356 tqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.23 E-value=0.002 Score=66.79 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=47.4
Q ss_pred hHHHHHHHHhhhhccc--ccc--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 366 EKILFPIFWGLMTLST--FGN--LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGD--i~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
..+..+|++++.|+|| ||. +.|.. ..-.++.++-+++|+++.|+++|.+-+-++.-.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c-~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPEC-PYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4688899999999999 998 56766 3667777888899999999999999988876654
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0021 Score=69.00 Aligned_cols=58 Identities=21% Similarity=0.474 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSK 425 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~ 425 (586)
.+..|+|++++++|| ||+++|.|+ .+++++++..++|+-++..+++.++..+...-..
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~-~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTD-AGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcC-cchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999 999999995 9999999999999999999999999998765543
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.57 E-value=0.0012 Score=73.63 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=67.9
Q ss_pred HHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEEeecCCCCCCccccceee
Q 007880 504 DLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGIWPGSRRCEICDTTFQ 582 (586)
Q Consensus 504 ~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~FGE~~~~~~~~~~at~~~ 582 (586)
+.++..+=..+......||+.++++||.+|++|+|++|.+.-......|++ .+..++.||.+|+++-+.+.++..|..+
T Consensus 498 sp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~A 577 (1158)
T KOG2968|consen 498 SPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMA 577 (1158)
T ss_pred CHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEE
Confidence 356677777788999999999999999999999999999987554344554 4589999999999998888888888887
Q ss_pred ec
Q 007880 583 VH 584 (586)
Q Consensus 583 ~~ 584 (586)
|-
T Consensus 578 vR 579 (1158)
T KOG2968|consen 578 VR 579 (1158)
T ss_pred Ee
Confidence 64
No 36
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.27 E-value=0.16 Score=57.68 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=39.2
Q ss_pred ccCCCcCcccCCCChhHHh---------hhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHH
Q 007880 69 RSNWSFGQVLDPRAKWVQE---------WNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLL 139 (586)
Q Consensus 69 ~~~w~~~~vi~P~s~~~~~---------Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 139 (586)
+..|. +.++.|+++||.. .|.+++++++.+.+++-+. -|.+... ..-.+.+.+-+++.-++
T Consensus 1099 r~~Ws-~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~~-------s~EriFltlsnyIFtaI 1168 (1956)
T KOG2302|consen 1099 RELWS-KYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVEG-------STERIFLTLSNYIFTAI 1168 (1956)
T ss_pred HHHHH-HHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--ccccccC-------cceEEEEEecchHHHHH
Confidence 44673 5789999999865 4444445555555443321 0111000 00012233445788899
Q ss_pred HHHHHHhhhe
Q 007880 140 HVWNMWLQLK 149 (586)
Q Consensus 140 F~~Diil~f~ 149 (586)
|+.++.++-.
T Consensus 1169 fV~Em~lKVV 1178 (1956)
T KOG2302|consen 1169 FVVEMTLKVV 1178 (1956)
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 37
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.096 Score=52.70 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhhccc--ccccccccc------chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTE------WLE-VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 427 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~------~~E-~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~ 427 (586)
.|..|+|+.+.|+|| +||.+|--+ -.+ +.++.+.+++|..+++-.++.+.-.+..++....
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~~ 255 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAEDE 255 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 488899999999999 999765421 123 4566778899999999888888877777665433
No 38
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.22 E-value=3.7 Score=49.22 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH------------HHcCCChHHHHHHHHHHHHHH
Q 007880 394 VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWM------------RKRQLPQGFRQRVRNYERQRW 461 (586)
Q Consensus 394 ~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m------------~~~~lp~~L~~rV~~y~~~~~ 461 (586)
..|..+++++..++.-++|+.|...++.......+-...-.++-+|| ...++|+. ||++-++ .|
T Consensus 1397 IYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~rfrslL~g~~~~~~i~~~---~~~~~lr-~w 1472 (1634)
T PLN03223 1397 IYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLRDKWRSMFKGWFYKNHIPEA---RVRRQLR-IW 1472 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhhhcccccCCcH---HHHHHHH-Hh
Confidence 34566666777777788888888887766544332222223333333 23456654 3333333 45
Q ss_pred HHhcC-------C--ChhHhhhcCCchhHHHHHHHHHHHHHhcCC
Q 007880 462 AAMRG-------V--DECEMISNLPEGLRRDIKYHLCLDLVRQVP 497 (586)
Q Consensus 462 ~~~~~-------~--~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~ 497 (586)
+-... . +.++++.-+.++|-.+-...++++.+...|
T Consensus 1473 ~ge~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~~~ 1517 (1634)
T PLN03223 1473 KGENPDEEEEEAFREEKEKVFTYLNKELDEAGLKRVLRRCVIETY 1517 (1634)
T ss_pred cCCCCCcccchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 42111 1 124677777777777777777777776554
No 39
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.79 E-value=0.15 Score=52.61 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhhhccc--ccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTE-WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~-~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
.....||-|++-|=|| ||--+++.. ..-.+..++-+|+|+++-|+++|.+-.-++.-.+
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 3456788889988888 997444432 2344555566799999999999998777655443
No 40
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=93.39 E-value=0.27 Score=52.50 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=27.2
Q ss_pred HHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHH
Q 007880 369 LFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLL 407 (586)
Q Consensus 369 ~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~ 407 (586)
..|+|+.++|++| |||.+|.- +.-.+...+++-+..++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~-w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDY-WASQLCVVILICVALGL 258 (1087)
T ss_pred eeeEEEEEEEEeecccccccccc-chhhHHHHHHHHHHHhc
Confidence 3589999999999 99999996 56665554444444433
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=92.92 E-value=0.1 Score=56.82 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=66.1
Q ss_pred HHHHHHhcCCcccCCCHHHHHHhhcccEEEEe-cCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIF-TKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 488 ~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~-~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
...+++.+.|-|.+++...-++|+..|...+. .+|.+|...|+.-|..+.|+.|.|+|.. .+|+. ..+.-|+.||
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~--e~l~mGnSFG 353 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR--EELKMGNSFG 353 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce--EEeecccccC
Confidence 34578889999999999999999988876665 5899999999999999999999999965 56654 4778899999
Q ss_pred ecC
Q 007880 567 IWP 569 (586)
Q Consensus 567 E~~ 569 (586)
..+
T Consensus 354 ~~P 356 (1283)
T KOG3542|consen 354 AEP 356 (1283)
T ss_pred CCC
Confidence 765
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=91.02 E-value=0.075 Score=53.42 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=42.3
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVF 418 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~i 418 (586)
-+..-|||||++.+|| ||--+|.|+ .+++|+|+--++|+-+--..+.+++.-
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~-~GK~Fcm~Yal~Gipl~lvmFqs~gER 132 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTD-GGKAFCMFYALVGIPLTLVMFQSIGER 132 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCc-CceehhhhHHHhcCchHHHHHHHHHHH
Confidence 3567799999999999 999999996 999999999999876655555544443
No 43
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.78 E-value=35 Score=39.90 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCccccCCCcCcccCCCChhHHhhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHH
Q 007880 65 GRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNM 144 (586)
Q Consensus 65 ~~~r~~~w~~~~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Di 144 (586)
...|.+.||++.|-+|. .+.+-+++++.++...-. +-| .++-.|.. +-.-.+..||-++-++|.+++
T Consensus 64 qttrprswclr~vcnpw------fe~vsmlvillncvtlgm--frp--ced~~c~s---~rc~ilqafddfifaffavem 130 (1956)
T KOG2302|consen 64 QTTRPRSWCLRMVCNPW------FECVSMLVILLNCVTLGM--FRP--CEDMDCLS---DRCKILQAFDDFIFAFFAVEM 130 (1956)
T ss_pred cCCCchhHHHHhhccHH------HHHHHHHHHHHhhhhhcc--ccc--chhcccch---hhhhHHHHHHHHHHHHHHHHH
Confidence 44788899999998883 344445556656554221 111 11122332 223456788999999999999
Q ss_pred Hhhhee
Q 007880 145 WLQLKM 150 (586)
Q Consensus 145 il~f~t 150 (586)
+++...
T Consensus 131 v~kmva 136 (1956)
T KOG2302|consen 131 VLKMVA 136 (1956)
T ss_pred HHHHHH
Confidence 999754
No 44
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.75 E-value=12 Score=45.11 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH--HHHHHHHHHHHHHcCCChHH
Q 007880 397 NIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAM--QLKMRNIEWWMRKRQLPQGF 449 (586)
Q Consensus 397 ~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~--~~~~~~l~~~m~~~~lp~~L 449 (586)
+++..+.-+++.-.+|+..+.++.+......++ -++...+.+|=.+-.+|+.+
T Consensus 1020 ~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPf 1074 (1381)
T KOG3614|consen 1020 VIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPF 1074 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 334444556666666777777766665444433 45667777777777777664
No 45
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=88.99 E-value=0.88 Score=51.83 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=60.6
Q ss_pred cCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE
Q 007880 475 NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK 554 (586)
Q Consensus 475 ~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~ 554 (586)
..|..++.++..-+..--+-.-|.|= +++.+++...+..||+|++.|+..+.+|.+.+|..+|.....+|++
T Consensus 84 ~i~~~~~~eil~~L~~i~~~EkP~fl--------~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~ 155 (1158)
T KOG2968|consen 84 RIPSHLQPEILYMLSAIRILEKPVFL--------ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKE 155 (1158)
T ss_pred cccccCchHHHHHHHHhHhhccceee--------eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCce
Confidence 34555666665433221111444443 3347888889999999999999999999999999999877677776
Q ss_pred EE-EEeCCCCEEee
Q 007880 555 SC-CMLGPGNFSGI 567 (586)
Q Consensus 555 ~i-~~l~~G~~FGE 567 (586)
.+ ....+|+.|--
T Consensus 156 ~llk~V~~G~~~tS 169 (1158)
T KOG2968|consen 156 YLLKTVPPGGSFTS 169 (1158)
T ss_pred eeEeeccCCCchHh
Confidence 55 78999976543
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=87.67 E-value=0.22 Score=53.31 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhH--------HHHHHHHHHHHHHHHHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEV--------VFNIIVLTSGLLLVTMLI 412 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~--------i~~i~~mi~G~~~fa~ii 412 (586)
.|+.|+|++++|+|| |||++|.+. ..+ ....+..++|....+.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTL-LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCC-cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 467799999999999 999999985 655 577888888988888777
No 47
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.08 E-value=27 Score=43.81 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhheeEEeecCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhh
Q 007880 126 AITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQI 204 (586)
Q Consensus 126 ~~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i 204 (586)
...+.+.+.+.-.+|..++.+.- |. +| -..|+. ++|-.+|.+-+. +.++
T Consensus 472 ~~~l~~~~~vF~~lF~~Em~~ki---~a-------------l~------------~~~yF~-~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 472 NYLLYLGNVVFTGLFTVEMILKI---YA-------------LG------------PRNYFR-RGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HH-------------cC------------cHHHHh-hhcchheEEEEe-hhhH
Confidence 44556677788888999998887 42 22 246777 599999998777 4433
No 48
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=84.45 E-value=1.2 Score=48.95 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=56.5
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEE
Q 007880 477 PEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS 545 (586)
Q Consensus 477 p~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v 545 (586)
|+.||......--...|.+...|.++-..-++.++...+.+.++...++|+.|+.+.+.|++++|.|-|
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v 91 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFV 91 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEe
Confidence 455555443333334677788899999999999999999999999899999999999999999999987
No 49
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.02 E-value=7.5 Score=48.39 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhheeEEeecCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcc
Q 007880 126 AITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILP 200 (586)
Q Consensus 126 ~~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP 200 (586)
...+..+|++.-.+|++++++..-. .| ... |++ ..|.++|++-..-
T Consensus 871 ~~~L~y~D~~Ft~iFt~Em~lK~ia----------~G----------------f~~--y~r-n~w~~lDf~Vv~v 916 (1592)
T KOG2301|consen 871 NGILEYADYIFTYIFTFEMLLKWIA----------YG----------------FFF--YFR-NAWNWLDFVVVIV 916 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----------hH----------------HHH--HHh-hHHhhhhHHHhhh
Confidence 3456788999999999999999822 12 111 887 4899999886544
No 50
>COG4709 Predicted membrane protein [Function unknown]
Probab=79.65 E-value=7.7 Score=36.34 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh--cCCChhHhhhcC--CchhHHHHHHHHHHHHHhcCCcccCCCHH
Q 007880 430 QLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAM--RGVDECEMISNL--PEGLRRDIKYHLCLDLVRQVPLFQHMDDL 505 (586)
Q Consensus 430 ~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~--~~~~~~~il~~L--p~~Lr~~i~~~~~~~~l~~~~lF~~~~~~ 505 (586)
.+-++++++|++ ++|++.++.+..||+-++.+. .|.+|+|+..+| |.++-.|+..+.-.+-.+.-|-+++.+..
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 345677888887 699999999999999888654 466799999987 45666666666655666666777666554
Q ss_pred HHH
Q 007880 506 VLE 508 (586)
Q Consensus 506 ~l~ 508 (586)
.+.
T Consensus 82 ii~ 84 (195)
T COG4709 82 IIA 84 (195)
T ss_pred HHH
Confidence 433
No 51
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=74.02 E-value=14 Score=34.84 Aligned_cols=56 Identities=23% Similarity=0.456 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH--hcCCChhHhhhcC--CchhHHHHHHH
Q 007880 430 QLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAA--MRGVDECEMISNL--PEGLRRDIKYH 487 (586)
Q Consensus 430 ~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~ 487 (586)
++-+++++++++ ++|++-++++.+||+-+++. ..|.+|+++.++| |.++-+++..+
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 455677888887 59999999999999988875 3567899999998 45555555543
No 52
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=65.90 E-value=12 Score=28.51 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=30.6
Q ss_pred EEecCCCEEEcCCCccC-eEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 517 LIFTKGEVITKEGDPVQ-RMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 517 ~~~~~ge~I~~~gd~~~-~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
..+.||+.+-..-.... ++++|++|++.+.. ++. ...+++|+.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEE
Confidence 45778887654444444 89999999999863 333 3577888765
No 53
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=60.81 E-value=34 Score=31.50 Aligned_cols=62 Identities=5% Similarity=0.054 Sum_probs=40.8
Q ss_pred cEEEEe-cCCCEE-EcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCCccc
Q 007880 514 VKSLIF-TKGEVI-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRCEIC 577 (586)
Q Consensus 514 l~~~~~-~~ge~I-~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~~~~ 577 (586)
++...+ .||..- +...+ .+++|++++|.+.+-.. ++|+.....|++|++|=-=++..=+|..
T Consensus 29 ~~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v~-d~g~~~~v~L~eGd~flvP~gvpHsP~r 92 (159)
T TIGR03037 29 FMVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKVT-EEGKREDVPIREGDIFLLPPHVPHSPQR 92 (159)
T ss_pred EEEEEeCCCCCCcccccCC-CceEEEEEcceEEEEEE-cCCcEEEEEECCCCEEEeCCCCCccccc
Confidence 445555 565554 55544 79999999999998542 3454445799999998544455444444
No 54
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=60.76 E-value=15 Score=29.01 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=28.0
Q ss_pred cCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 520 TKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 520 ~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.||..-..-.. +++.+|++|+|.+.. ++|.. ..+++||.|=
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~--~~G~~--~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITD--EDGET--VTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEE--TTTEE--EEEETTEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEE--CCCCE--EEEcCCcEEE
Confidence 45554333222 888999999999853 45543 7899999773
No 55
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.17 E-value=2.7e+02 Score=30.39 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHH-----HHHHHhcCCcccCCCHHHHHHhhcccEEEEe----
Q 007880 449 FRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHL-----CLDLVRQVPLFQHMDDLVLENICDRVKSLIF---- 519 (586)
Q Consensus 449 L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~-----~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~---- 519 (586)
+.+-++.|.+|+ +.|..|+..+...- +.+....-...+.+|+.+..+++.+++....
T Consensus 248 ~mDGiK~YM~~R--------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~ 313 (536)
T KOG0500|consen 248 KMDGIKQYMRYR--------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR 313 (536)
T ss_pred HHHHHHHHHHHh--------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence 334567777765 57788888876543 2222333345566888887777766544222
Q ss_pred ---------------cCCCEEEcCCCccCeEEEEEeeeEEEEEE-ecCCcEEEEEeCCC-CEEeecC
Q 007880 520 ---------------TKGEVITKEGDPVQRMLFVVRGHLQSSQI-LHNNIKSCCMLGPG-NFSGIWP 569 (586)
Q Consensus 520 ---------------~~ge~I~~~gd~~~~~yfI~~G~v~v~~~-~~~~~~~i~~l~~G-~~FGE~~ 569 (586)
.-.-.++..|| |++.+|.+.---. .+.|.-. ..-..| ..|+.+.
T Consensus 314 iF~~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvgkEMyIVk~G~L~-Vv~dDg~t~~~~L~ 374 (536)
T KOG0500|consen 314 IFQDCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVGKEMYIVKEGKLA-VVADDGVTVFVTLK 374 (536)
T ss_pred HHHhcchhHHHHHHHHhcceeeCCCC-----eEEecCcccceEEEEEccEEE-EEecCCcEEEEEec
Confidence 12356888888 9999999864221 2344422 222333 5666664
No 56
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=57.77 E-value=18 Score=32.20 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhhhhccc-cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHc
Q 007880 365 LEKILFPIFWGLMTLST-FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKR 443 (586)
Q Consensus 365 ~~~Y~~slYwa~~TmtT-yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~ 443 (586)
......++++.+.+++. -++..|.+ ...|++.+++.+++.++.+..-+++++.+.... ++..++.+++..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~q~~~~~~~s-~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQQGSSIRPRS-WSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTHS
T ss_pred cccHHHHHHHHHHhhccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHCC
Confidence 35667788888888776 56788998 499999999999999999999999999886433 233355555555554
No 57
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=54.51 E-value=84 Score=30.31 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=45.7
Q ss_pred HHHHHhhcccEEEEecCCCEE-EcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 505 LVLENICDRVKSLIFTKGEVI-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 505 ~~l~~l~~~l~~~~~~~ge~I-~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
..+..+...-++..+.+|..+ +......+..+++.+|.+++. ..++ -.+.....-..||-..
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir--r~d~-ll~~t~~aP~IlGl~~ 75 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR--REEN-VLIGITQAPYIMGLAD 75 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE--ecCC-eEEEeccCCeEeeccc
Confidence 356677777888899999997 544444477999999999993 2444 4567778888888754
No 58
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=53.64 E-value=2e+02 Score=30.95 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=15.0
Q ss_pred HHHHHHhhcccchhhHHhhhc
Q 007880 179 SVALRYMKAKKGFFFDLFVIL 199 (586)
Q Consensus 179 ~Ia~~Yl~sk~~F~iDlls~l 199 (586)
+..++|++ ..|-++|++.++
T Consensus 234 ~~g~~y~~-~~WN~~e~~ii~ 253 (425)
T PF08016_consen 234 REGRAYFK-SFWNWLELLIIL 253 (425)
T ss_pred HhhhHHhh-hcCcHHHHHHHH
Confidence 44478898 588899988765
No 59
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=51.84 E-value=57 Score=29.28 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=37.6
Q ss_pred cccEEEEecCCCEEEcCCC-ccCeEEEEEeeeEEEEEEecCC-cEEEEEeCCCCEEee
Q 007880 512 DRVKSLIFTKGEVITKEGD-PVQRMLFVVRGHLQSSQILHNN-IKSCCMLGPGNFSGI 567 (586)
Q Consensus 512 ~~l~~~~~~~ge~I~~~gd-~~~~~yfI~~G~v~v~~~~~~~-~~~i~~l~~G~~FGE 567 (586)
..+....+.||...-..-. ..+++++|++|+..+....+++ .+....+.+|+.+=-
T Consensus 30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 4456667788887654433 2578999999999987544333 333467888887643
No 60
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=51.60 E-value=18 Score=31.00 Aligned_cols=44 Identities=27% Similarity=0.509 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHHHHHHHHh----------cCCChhHhhhcCCchhHHHHHHH
Q 007880 444 QLPQGFRQRVRNYERQRWAAM----------RGVDECEMISNLPEGLRRDIKYH 487 (586)
Q Consensus 444 ~lp~~L~~rV~~y~~~~~~~~----------~~~~~~~il~~Lp~~Lr~~i~~~ 487 (586)
-||.+++..|...+...-... ...|.-.++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 489999999999998554321 12345789999999999999754
No 61
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=49.75 E-value=91 Score=29.70 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=34.2
Q ss_pred cEEEEecCCCEE---------EcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 514 VKSLIFTKGEVI---------TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 514 l~~~~~~~ge~I---------~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+-...+.||.+. +.+.....++|++++|+..+.....+|......+.+|+.+
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v 130 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVV 130 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEE
Confidence 445566787753 3333333599999999999876444444445678888865
No 62
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=45.51 E-value=67 Score=33.99 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=37.1
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+....+.||...-..-....++.++++|++.+.....+++.....+++||.|
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~ 120 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLW 120 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEE
Confidence 4445677887653322345789999999999976555566655689999986
No 63
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=44.33 E-value=82 Score=27.63 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=35.1
Q ss_pred hcccEEEEecCCCEE-EcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 511 CDRVKSLIFTKGEVI-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 511 ~~~l~~~~~~~ge~I-~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
....+...+.||+.+ .+.-...+++|+|++|+..+.. + +. ...+++|+.+
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~--~-~~--~~~v~~gd~~ 85 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI--G-GE--EVEVKAGDSV 85 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE--C-CE--EEEecCCCEE
Confidence 445777788899886 5555557999999999999865 2 22 2456666654
No 64
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=43.14 E-value=1.1e+02 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.327 Sum_probs=16.2
Q ss_pred HHHHHHHHhchHHH---HHHHHHHHHHHHHH
Q 007880 414 NIKVFLHATTSKKQ---AMQLKMRNIEWWMR 441 (586)
Q Consensus 414 ~i~~il~~~~~~~~---~~~~~~~~l~~~m~ 441 (586)
.|-.++.+.+.+++ ..++|+|.+-+.+.
T Consensus 26 ~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 26 FIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 34445544433322 57888888877654
No 65
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=42.84 E-value=92 Score=29.20 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=38.4
Q ss_pred cEEEEe-cCCC-EEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCCc
Q 007880 514 VKSLIF-TKGE-VITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRCE 575 (586)
Q Consensus 514 l~~~~~-~~ge-~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~~ 575 (586)
...+++ .||. .-+.- +..+++|++++|.+.+... ++|+.....|++|++|=-=++..=++
T Consensus 35 ~~VmvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~-d~g~~~~v~L~eGd~fllP~gvpHsP 96 (177)
T PRK13264 35 FIVMVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQ-EDGKRRDVPIREGEMFLLPPHVPHSP 96 (177)
T ss_pred EEEEEEccCCccccccc-CCCceEEEEECCeEEEEEE-cCCceeeEEECCCCEEEeCCCCCcCC
Confidence 444455 6774 33344 5579999999999988653 34443457899999884444444344
No 66
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=41.67 E-value=91 Score=33.00 Aligned_cols=53 Identities=6% Similarity=0.096 Sum_probs=37.9
Q ss_pred ccEEEEecCCCEEEcC-CCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 513 RVKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~-gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
.+....+.||...-.- ....+++++|++|++.+.....+++.....+++||.+
T Consensus 246 s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~ 299 (367)
T TIGR03404 246 AAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVG 299 (367)
T ss_pred EEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEE
Confidence 3567778888876433 2335899999999999876555555555778999854
No 67
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=38.39 E-value=68 Score=21.24 Aligned_cols=26 Identities=12% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCC-----hHHHHHHHHHH
Q 007880 432 KMRNIEWWMRKRQLP-----QGFRQRVRNYE 457 (586)
Q Consensus 432 ~~~~l~~~m~~~~lp-----~~L~~rV~~y~ 457 (586)
+..+++++++.+++| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356889999999998 45888888875
No 68
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=38.09 E-value=91 Score=27.42 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=33.5
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
+....+.||..+-..-....++++|++|++.+.. ..+++ ...|.+||.+---+
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~-i~~g~--~~~L~aGD~i~~~~ 89 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVED-LATGE--VHPIRPGTMYALDK 89 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEEE-cCCCE--EEEeCCCeEEEECC
Confidence 4556778887553221222479999999999741 11243 36899999875443
No 69
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=37.68 E-value=2e+02 Score=26.23 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=44.6
Q ss_pred CCCHHHHHHhhcc-cEEEEecCCCEEEcCCCc-cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 501 HMDDLVLENICDR-VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 501 ~~~~~~l~~l~~~-l~~~~~~~ge~I~~~gd~-~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+.|...-+.|+.. .+.....+|+.-.-||.. .|.+-++++|++.|.. +| +.+..+.|-++.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g-~fLH~I~p~qFl 76 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DG-RFLHYIYPYQFL 76 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CC-EeeEeecccccc
Confidence 4577777777777 666778999998777754 5899999999999865 33 345555665544
No 70
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=37.66 E-value=1.8e+02 Score=27.78 Aligned_cols=59 Identities=27% Similarity=0.434 Sum_probs=40.7
Q ss_pred hcCCchhHHHHHHHHHHHHHhcCCcc-cCCCHHHHHHhhcccEEEE--ecCCCEEEcCCCccC
Q 007880 474 SNLPEGLRRDIKYHLCLDLVRQVPLF-QHMDDLVLENICDRVKSLI--FTKGEVITKEGDPVQ 533 (586)
Q Consensus 474 ~~Lp~~Lr~~i~~~~~~~~l~~~~lF-~~~~~~~l~~l~~~l~~~~--~~~ge~I~~~gd~~~ 533 (586)
..+|+. ...+...+...++.=.-.| ...++...++.+....+.. +.+|+.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345555 3444444444444433444 4566778888899999999 999999999999764
No 71
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.41 E-value=7.6e+02 Score=29.16 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Q 007880 234 YLPKIYHSVCLLRRMQNLSGYIFGTVWWGIV 264 (586)
Q Consensus 234 rl~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~ 264 (586)
-..|++|++++.+.++.... ....+|..++
T Consensus 564 ~tiK~~k~l~f~~t~~~~s~-TL~ra~~~I~ 593 (798)
T KOG3599|consen 564 TTIKLWKVLRFNKTMSQFSS-TLSRAWKEIV 593 (798)
T ss_pred HHHHHHHhcchhHHHHHHHH-HHHHHHHHHH
Confidence 35577777777776654422 2334444433
No 72
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.50 E-value=93 Score=27.20 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=40.2
Q ss_pred cEEEEecCCCEEEcCCCc-cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCC
Q 007880 514 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPG 570 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~-~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~ 570 (586)
+....+.||..+-.--.+ .+...+|++|++.+.. + +. ...+.+||++-.-++
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~--~-g~--~~~l~~Gd~i~ip~g 97 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL--E-GE--KKELKAGDVIIIPPG 97 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe--c-CC--ceEecCCCEEEECCC
Confidence 556778899998777665 7789999999999865 2 33 368999999877663
No 73
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=30.62 E-value=2.5e+02 Score=23.20 Aligned_cols=63 Identities=6% Similarity=-0.104 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHhcCCC--hhHhhhcCCchhHHHHHHHHHHHH
Q 007880 430 QLKMRNIEWWMRK-RQLPQGFRQRVRNYERQRWAAMRGVD--ECEMISNLPEGLRRDIKYHLCLDL 492 (586)
Q Consensus 430 ~~~~~~l~~~m~~-~~lp~~L~~rV~~y~~~~~~~~~~~~--~~~il~~Lp~~Lr~~i~~~~~~~~ 492 (586)
.+....+.++|.+ .++++.-..++++.++..-....... -+.+-..+++..|..+...+..-.
T Consensus 18 ~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA 83 (104)
T cd07313 18 EEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA 83 (104)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455677888888 49999999999999887655332222 244555667788887776665433
No 74
>PRK06771 hypothetical protein; Provisional
Probab=30.45 E-value=2.6e+02 Score=23.23 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 007880 408 VTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRN 455 (586)
Q Consensus 408 fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~ 455 (586)
|-|+...++.+-...+.+.+.-+.+++.+.+.+.--...+.+..+++.
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 445666677777777777777777777766665444332234444444
No 75
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=30.23 E-value=83 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHH
Q 007880 440 MRKRQLPQGFRQRVRNYERQRWAA 463 (586)
Q Consensus 440 m~~~~lp~~L~~rV~~y~~~~~~~ 463 (586)
--..++|++|++.|.+|.+|..+.
T Consensus 6 elfqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 6 ELFQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHHHCcHHHHHHHHHHHHHHHHH
Confidence 345689999999999999998764
No 76
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=29.87 E-value=9.3e+02 Score=27.94 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhcccccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007880 368 ILFPIFWGLMTLSTFGNLEST--TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSK 425 (586)
Q Consensus 368 Y~~slYwa~~TmtTyGDi~p~--t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~ 425 (586)
=+.++||++..+..+-+..+. ....-.++.+.++++-+++.-.+|+.+++.++.....
T Consensus 562 s~~~lf~~~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~ 621 (743)
T TIGR00870 562 TSQELFWAIIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADD 621 (743)
T ss_pred HHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 345677776555322111111 1134455555566666666666777777776655543
No 77
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=28.87 E-value=99 Score=26.39 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHHHHHHh---------cCC---C-hhHhhhcCCchhHHHHHHHHHHHHH
Q 007880 444 QLPQGFRQRVRNYERQRWAAM---------RGV---D-ECEMISNLPEGLRRDIKYHLCLDLV 493 (586)
Q Consensus 444 ~lp~~L~~rV~~y~~~~~~~~---------~~~---~-~~~il~~Lp~~Lr~~i~~~~~~~~l 493 (586)
-||.+++.+|..-+...-... ... . ..++|..||+.+|.+|..+.....-
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~ 70 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERR 70 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 389999999865544321100 000 1 3699999999999999877655443
No 78
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=28.81 E-value=1.4e+02 Score=26.57 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=37.2
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCC-----cEEEE--EeCCCCEEee
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN-----IKSCC--MLGPGNFSGI 567 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~-----~~~i~--~l~~G~~FGE 567 (586)
.+....+.||-...-.-..++++.+|.+|+..+.....++ ..... .+++||+|=-
T Consensus 35 ~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 35 AVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp EEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred EEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 3455556788877544446789999999999976555544 12223 4999998853
No 79
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.77 E-value=9.9e+02 Score=27.88 Aligned_cols=72 Identities=24% Similarity=0.444 Sum_probs=50.6
Q ss_pred ccccccccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 007880 382 FGNLESTTE-----WLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK-QAMQLKMRNIEWWMRKRQLPQGFRQRVR 454 (586)
Q Consensus 382 yGDi~p~t~-----~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~l~~~m~~~~lp~~L~~rV~ 454 (586)
+||.....+ ..=.+|.++++++.++++-++|+.+++........+ ++++.+--+ --.|-++.+|+.++.+-+
T Consensus 605 ~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~-~iL~lErs~p~~~r~~~~ 682 (782)
T KOG3676|consen 605 MGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAA-TILMLERSLPPALRKRFR 682 (782)
T ss_pred hhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHH-HHHHHHhcCCHHHHHHHh
Confidence 888754433 234556667778888888888888888888777666 566655444 345667899999988733
No 80
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.48 E-value=18 Score=41.61 Aligned_cols=28 Identities=46% Similarity=0.761 Sum_probs=16.5
Q ss_pred eecccCCCCchhhHHhhhhhhHHHhhhh
Q 007880 17 YTTTDDDSDDKEEEEEEMVDEEEQEEEE 44 (586)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (586)
++.++|++|+.+++++|..+|++++|+.
T Consensus 1400 ~r~~~dd~DeeeD~e~Ed~dEddd~edd 1427 (1516)
T KOG1832|consen 1400 RRPTDDDSDEEEDDETEDEDEDDDEEDD 1427 (1516)
T ss_pred cCCCccccCccccchhhccccccccccc
Confidence 4566777777766665555555444443
No 81
>PHA03029 hypothetical protein; Provisional
Probab=28.42 E-value=2.9e+02 Score=21.73 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 007880 392 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLK 432 (586)
Q Consensus 392 ~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~ 432 (586)
.|.++-++..++=+++.--+||.+-..+-+.++.+..-.+.
T Consensus 4 ~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raai~qn 44 (92)
T PHA03029 4 AEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAAIDQN 44 (92)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877777778888877777777655544433
No 82
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.41 E-value=2.8e+02 Score=32.19 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=47.3
Q ss_pred hcCCchhHHHHHHHHHHHHHh-----cCCcccCCCHHHHHHhhcccEEEEec-----C--------------CCEEEcCC
Q 007880 474 SNLPEGLRRDIKYHLCLDLVR-----QVPLFQHMDDLVLENICDRVKSLIFT-----K--------------GEVITKEG 529 (586)
Q Consensus 474 ~~Lp~~Lr~~i~~~~~~~~l~-----~~~lF~~~~~~~l~~l~~~l~~~~~~-----~--------------ge~I~~~g 529 (586)
..||+.||++|..+...+... ...+++++|++...+|+.++-..... . ....+.+|
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pg 450 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPG 450 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCC
Confidence 379999999999888777665 33678899999888887776332221 1 23455566
Q ss_pred CccCeEEEEEeeeEE
Q 007880 530 DPVQRMLFVVRGHLQ 544 (586)
Q Consensus 530 d~~~~~yfI~~G~v~ 544 (586)
| |+|.+|.+-
T Consensus 451 e-----~iireGd~v 460 (727)
T KOG0498|consen 451 E-----YIIREGDPV 460 (727)
T ss_pred C-----eEEecCCcc
Confidence 5 999999874
No 83
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.98 E-value=1.1e+03 Score=27.84 Aligned_cols=42 Identities=7% Similarity=0.042 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHHHH
Q 007880 444 QLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCL 490 (586)
Q Consensus 444 ~lp~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~ 490 (586)
++|+.|+.+|..++....- ..-.+++.+++....++...+..
T Consensus 358 ~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 358 QLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhe
Confidence 6899999999887754332 23357788888887777766543
No 84
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.17 E-value=2.2e+02 Score=26.11 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=36.0
Q ss_pred cEEEEecCCCE--EEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCC
Q 007880 514 VKSLIFTKGEV--ITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPG 570 (586)
Q Consensus 514 l~~~~~~~ge~--I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~ 570 (586)
+.....+||-. ...-....+++++|++|+..+.. ++.+ ..|++||..|--++
T Consensus 44 vn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~e--~~lrpGD~~gFpAG 97 (161)
T COG3837 44 VNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGGE--TRLRPGDSAGFPAG 97 (161)
T ss_pred cceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCee--EEecCCceeeccCC
Confidence 34455667654 44445566899999999999743 3432 58899998887664
No 85
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=24.09 E-value=2.7e+02 Score=19.82 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007880 395 VFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRN 435 (586)
Q Consensus 395 i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~ 435 (586)
.++.+.++.-++....+.+.+.++-.+...+..+++..-++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666666666666666665544
No 86
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=22.88 E-value=2.4e+02 Score=24.57 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=28.9
Q ss_pred ecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 519 FTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 519 ~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
..||..=..-++ ++..-|++|.+.+.. ++|+ ...+++||.|
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~--d~Ge--~v~~~aGD~~ 92 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTP--DGGE--PVEVRAGDSF 92 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEEC--CCCe--EEEEcCCCEE
Confidence 456666544444 788899999999853 4443 3689999976
No 87
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=21.23 E-value=3.3e+02 Score=24.74 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007880 262 GIVLNMIAYFVASHAAGACWYLLGI 286 (586)
Q Consensus 262 ~~~~~l~~~~l~~H~~aC~~~~i~~ 286 (586)
..+..++.+++..+..++..+.-..
T Consensus 99 ~~~~~~~~~~~~~a~~~~~lf~~~~ 123 (200)
T PF00520_consen 99 KFILLLFIVLLFFACIGYQLFGGSD 123 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccchhheeccccc
Confidence 3566666666666677777776654
No 88
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=21.13 E-value=1.8e+02 Score=21.40 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCC-------hHHHHHHHHHHHHHHHHhcCCChhHhh
Q 007880 433 MRNIEWWMRKRQLP-------QGFRQRVRNYERQRWAAMRGVDECEMI 473 (586)
Q Consensus 433 ~~~l~~~m~~~~lp-------~~L~~rV~~y~~~~~~~~~~~~~~~il 473 (586)
+..+..|.+..+++ ++|...|++||. ....+|.+++
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI 45 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVI 45 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHH
Confidence 45678888888877 557777777776 2346666654
Done!