Query 007880
Match_columns 586
No_of_seqs 326 out of 2741
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 8E-30 2.7E-34 267.0 12.4 157 365-586 159-317 (355)
2 3ukn_A Novel protein similar t 99.9 1.8E-27 6.3E-32 230.4 12.3 166 416-586 1-168 (212)
3 2ptm_A Hyperpolarization-activ 99.9 1.1E-26 3.8E-31 222.4 15.4 163 420-586 1-163 (198)
4 3bpz_A Potassium/sodium hyperp 99.9 5.3E-26 1.8E-30 218.5 13.7 162 420-586 2-163 (202)
5 1orq_C Potassium channel; volt 99.9 3E-22 1E-26 195.5 13.1 209 87-421 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.8 3.7E-21 1.3E-25 209.4 13.1 317 65-499 162-499 (514)
7 4f8a_A Potassium voltage-gated 99.6 9.9E-15 3.4E-19 133.5 13.3 113 469-585 5-119 (160)
8 2a9h_A Voltage-gated potassium 99.6 6.2E-15 2.1E-19 134.2 10.6 66 365-431 82-149 (155)
9 3vou_A ION transport 2 domain 99.5 1.2E-12 4E-17 118.7 15.6 85 367-452 52-148 (148)
10 4h33_A LMO2059 protein; bilaye 99.4 1.1E-13 3.9E-18 123.5 7.3 91 367-458 43-135 (137)
11 2ih3_C Voltage-gated potassium 99.4 6.2E-13 2.1E-17 116.3 10.3 58 366-424 60-119 (122)
12 3ocp_A PRKG1 protein; serine/t 99.4 4.8E-13 1.6E-17 119.5 9.5 107 475-585 7-113 (139)
13 3eff_K Voltage-gated potassium 99.3 5.2E-12 1.8E-16 113.3 10.7 59 366-425 39-99 (139)
14 3idb_B CAMP-dependent protein 99.3 5.4E-12 1.8E-16 115.6 10.7 107 479-586 26-133 (161)
15 3shr_A CGMP-dependent protein 99.3 9.4E-12 3.2E-16 126.1 11.8 113 470-586 18-130 (299)
16 3gyd_A CNMP-BD protein, cyclic 99.3 8.9E-12 3.1E-16 117.5 10.2 110 476-585 24-134 (187)
17 2d93_A RAP guanine nucleotide 99.3 6.6E-12 2.3E-16 111.3 8.5 104 477-584 2-107 (134)
18 3mdp_A Cyclic nucleotide-bindi 99.3 8.5E-12 2.9E-16 111.2 8.0 96 491-586 6-105 (142)
19 2pqq_A Putative transcriptiona 99.2 2.4E-11 8.2E-16 109.1 10.1 96 490-585 4-100 (149)
20 3rvy_A ION transport protein; 99.2 1.6E-11 5.4E-16 123.9 9.1 62 364-426 177-246 (285)
21 3pna_A CAMP-dependent protein 99.2 3.6E-11 1.2E-15 109.3 9.1 95 487-585 34-128 (154)
22 2z69_A DNR protein; beta barre 99.2 4.3E-11 1.5E-15 108.2 9.2 96 490-585 11-108 (154)
23 2k1e_A Water soluble analogue 99.1 2.3E-11 7.8E-16 103.1 4.7 58 366-424 39-98 (103)
24 4ev0_A Transcription regulator 99.1 9.4E-11 3.2E-15 112.4 8.8 93 493-585 1-94 (216)
25 4ava_A Lysine acetyltransferas 99.1 8.4E-11 2.9E-15 121.0 8.9 97 490-586 12-108 (333)
26 3e97_A Transcriptional regulat 99.1 1.3E-10 4.4E-15 112.8 9.1 97 490-586 5-102 (231)
27 3tnp_B CAMP-dependent protein 99.1 2.1E-10 7.1E-15 122.0 10.9 105 481-586 135-240 (416)
28 1o7f_A CAMP-dependent RAP1 gua 99.1 3E-10 1E-14 122.6 12.0 111 475-586 26-139 (469)
29 3d0s_A Transcriptional regulat 99.1 1.2E-10 4.2E-15 112.7 8.1 96 490-585 5-101 (227)
30 3fx3_A Cyclic nucleotide-bindi 99.1 1.3E-10 4.3E-15 113.4 7.9 99 487-585 7-106 (237)
31 3dn7_A Cyclic nucleotide bindi 99.1 1.2E-10 4.1E-15 109.9 7.5 96 490-585 6-103 (194)
32 2q67_A Potassium channel prote 99.1 5.7E-10 2E-14 96.1 11.0 60 367-427 49-110 (114)
33 3of1_A CAMP-dependent protein 99.1 1.4E-10 4.7E-15 113.5 7.2 94 489-586 5-98 (246)
34 2qcs_B CAMP-dependent protein 99.1 1E-09 3.4E-14 110.4 13.4 98 488-585 154-253 (291)
35 3dkw_A DNR protein; CRP-FNR, H 99.1 1.8E-10 6.1E-15 111.4 7.5 97 490-586 8-106 (227)
36 3iwz_A CAP-like, catabolite ac 99.0 6.4E-10 2.2E-14 107.7 10.9 96 490-585 10-107 (230)
37 1vp6_A CNBD, cyclic-nucleotide 99.0 1.9E-10 6.5E-15 102.0 6.3 90 489-584 9-98 (138)
38 1zyb_A Transcription regulator 99.0 4.4E-10 1.5E-14 109.4 9.5 97 489-585 16-116 (232)
39 3dv8_A Transcriptional regulat 99.0 4.3E-10 1.5E-14 108.1 9.2 95 491-585 3-100 (220)
40 2qcs_B CAMP-dependent protein 99.0 6E-10 2.1E-14 112.1 10.4 102 481-586 29-130 (291)
41 4din_B CAMP-dependent protein 99.0 3.9E-10 1.3E-14 118.5 8.6 102 481-586 120-221 (381)
42 3shr_A CGMP-dependent protein 99.0 7.4E-10 2.5E-14 112.0 10.1 99 488-586 154-254 (299)
43 3of1_A CAMP-dependent protein 99.0 5.1E-10 1.7E-14 109.4 7.4 94 489-585 123-216 (246)
44 1wgp_A Probable cyclic nucleot 99.0 7E-11 2.4E-15 104.8 0.8 78 491-569 6-86 (137)
45 4f7z_A RAP guanine nucleotide 98.9 2.1E-09 7.1E-14 126.8 11.4 114 471-586 23-139 (999)
46 3ouf_A Potassium channel prote 98.9 4.4E-09 1.5E-13 87.8 9.8 54 367-421 32-87 (97)
47 1o7f_A CAMP-dependent RAP1 gua 98.9 4.7E-09 1.6E-13 113.1 12.0 101 481-584 327-428 (469)
48 4din_B CAMP-dependent protein 98.9 1.3E-09 4.6E-14 114.4 7.3 99 488-586 245-345 (381)
49 3ryp_A Catabolite gene activat 98.9 5.1E-09 1.7E-13 99.7 10.7 89 497-585 2-92 (210)
50 3ldc_A Calcium-gated potassium 98.9 7.3E-09 2.5E-13 83.6 9.8 52 367-419 28-81 (82)
51 2gau_A Transcriptional regulat 98.9 7.4E-10 2.5E-14 107.5 4.6 91 494-584 13-104 (232)
52 3tnp_B CAMP-dependent protein 98.8 5.7E-09 1.9E-13 110.9 9.5 96 491-586 267-369 (416)
53 4f7z_A RAP guanine nucleotide 98.8 1.1E-08 3.6E-13 120.8 12.5 95 487-584 333-428 (999)
54 2oz6_A Virulence factor regula 98.8 1.3E-08 4.5E-13 96.6 10.8 84 502-585 1-89 (207)
55 3pjs_K KCSA, voltage-gated pot 98.8 3.2E-10 1.1E-14 104.7 -1.1 64 366-430 66-131 (166)
56 2fmy_A COOA, carbon monoxide o 98.8 3.7E-09 1.3E-13 101.7 5.7 76 491-567 4-80 (220)
57 3kcc_A Catabolite gene activat 98.8 2.2E-08 7.7E-13 99.1 10.5 86 500-585 55-142 (260)
58 1ft9_A Carbon monoxide oxidati 98.7 6.7E-09 2.3E-13 100.1 5.7 74 492-566 1-75 (222)
59 3cf6_E RAP guanine nucleotide 98.7 2E-08 7E-13 113.0 10.0 111 470-584 12-123 (694)
60 1o5l_A Transcriptional regulat 98.7 1.7E-08 5.7E-13 96.8 6.9 90 496-585 4-95 (213)
61 1xl4_A Inward rectifier potass 98.7 2.9E-08 1E-12 100.0 8.0 56 366-422 81-138 (301)
62 3e6c_C CPRK, cyclic nucleotide 98.6 4.9E-08 1.7E-12 95.8 7.6 89 494-585 12-101 (250)
63 1p7b_A Integral membrane chann 98.6 3.2E-08 1.1E-12 100.8 5.5 58 366-424 95-154 (333)
64 2qks_A KIR3.1-prokaryotic KIR 98.5 2.6E-07 8.9E-12 93.8 10.4 57 367-424 78-136 (321)
65 3um7_A Potassium channel subfa 98.5 1.9E-07 6.4E-12 93.8 9.1 75 367-448 115-191 (309)
66 3b02_A Transcriptional regulat 98.4 3.9E-07 1.3E-11 85.7 8.3 69 517-586 2-71 (195)
67 3la7_A Global nitrogen regulat 98.4 4E-07 1.4E-11 88.9 8.3 72 504-575 30-105 (243)
68 2bgc_A PRFA; bacterial infecti 98.4 5.3E-07 1.8E-11 87.7 9.1 73 501-574 3-78 (238)
69 3sya_A G protein-activated inw 98.4 1.5E-06 5E-11 88.4 11.1 58 366-424 90-151 (340)
70 2zcw_A TTHA1359, transcription 98.3 4.3E-07 1.5E-11 85.9 5.0 74 510-584 1-77 (202)
71 4dxw_A Navrh, ION transport pr 98.3 6.1E-06 2.1E-10 80.0 13.3 58 365-422 163-226 (229)
72 4gx0_A TRKA domain protein; me 98.3 1.9E-06 6.6E-11 95.0 10.2 52 367-419 51-105 (565)
73 3spc_A Inward-rectifier K+ cha 98.2 6E-06 2E-10 84.0 10.8 58 366-424 93-154 (343)
74 3um7_A Potassium channel subfa 98.2 8.8E-07 3E-11 88.9 3.9 60 367-427 224-291 (309)
75 3ukm_A Potassium channel subfa 98.1 3E-06 1E-10 83.8 7.0 55 367-422 93-149 (280)
76 3ukm_A Potassium channel subfa 98.0 4E-06 1.4E-10 82.9 4.7 54 367-421 201-263 (280)
77 1lnq_A MTHK channels, potassiu 97.8 1.2E-06 4E-11 90.2 -2.4 56 368-424 46-103 (336)
78 1ors_C Potassium channel; volt 97.6 0.00017 5.9E-09 63.3 7.9 78 86-203 6-83 (132)
79 2kyh_A KVAP, voltage-gated pot 97.5 0.00016 5.3E-09 64.7 7.3 77 87-203 22-98 (147)
80 3fjs_A Uncharacterized protein 55.3 31 0.001 28.2 6.9 50 513-567 37-86 (114)
81 3lwc_A Uncharacterized protein 54.0 37 0.0013 28.1 7.3 49 515-569 43-91 (119)
82 1dgw_A Canavalin; duplicated s 53.6 16 0.00055 32.9 5.2 53 513-566 42-94 (178)
83 2ozj_A Cupin 2, conserved barr 53.2 32 0.0011 27.7 6.7 48 514-566 40-87 (114)
84 2gu9_A Tetracenomycin polyketi 47.6 50 0.0017 26.1 7.0 48 514-566 23-73 (113)
85 1yhf_A Hypothetical protein SP 46.3 51 0.0018 26.4 6.9 48 514-566 42-89 (115)
86 1yfu_A 3-hydroxyanthranilate-3 45.1 36 0.0012 30.5 5.9 44 531-575 54-97 (174)
87 3kg2_A Glutamate receptor 2; I 44.5 27 0.00091 39.3 6.3 54 367-421 563-617 (823)
88 1v70_A Probable antibiotics sy 44.4 60 0.002 25.1 6.9 48 514-566 30-78 (105)
89 2vqa_A SLL1358 protein, MNCA; 44.2 41 0.0014 33.7 7.1 52 514-565 54-106 (361)
90 4e2g_A Cupin 2 conserved barre 44.1 53 0.0018 26.9 6.8 49 513-566 42-90 (126)
91 3rns_A Cupin 2 conserved barre 43.4 50 0.0017 30.7 7.2 48 513-565 38-85 (227)
92 2pfw_A Cupin 2, conserved barr 42.9 57 0.0019 26.2 6.7 48 514-566 36-83 (116)
93 1j58_A YVRK protein; cupin, de 42.3 41 0.0014 34.0 6.8 53 513-565 80-132 (385)
94 1o5u_A Novel thermotoga mariti 41.6 64 0.0022 25.8 6.6 48 514-567 33-80 (101)
95 3h8u_A Uncharacterized conserv 41.4 50 0.0017 27.0 6.1 50 513-566 40-90 (125)
96 2d5f_A Glycinin A3B4 subunit; 40.1 62 0.0021 34.2 7.8 59 507-565 362-422 (493)
97 1fi2_A Oxalate oxidase, germin 39.8 66 0.0023 29.2 7.2 54 513-566 73-130 (201)
98 3lag_A Uncharacterized protein 39.5 9.4 0.00032 30.7 1.1 51 513-565 18-69 (98)
99 1j58_A YVRK protein; cupin, de 39.5 60 0.0021 32.8 7.6 54 513-566 258-312 (385)
100 2vqa_A SLL1358 protein, MNCA; 39.1 63 0.0022 32.2 7.6 54 513-566 235-289 (361)
101 3bcw_A Uncharacterized protein 39.0 32 0.0011 28.9 4.5 48 517-569 54-101 (123)
102 1zvf_A 3-hydroxyanthranilate 3 38.5 37 0.0013 30.4 4.9 45 530-575 52-100 (176)
103 3c3v_A Arachin ARAH3 isoform; 38.4 62 0.0021 34.3 7.5 59 507-565 367-427 (510)
104 2fqp_A Hypothetical protein BP 38.2 35 0.0012 26.7 4.5 53 514-569 20-73 (97)
105 2bnm_A Epoxidase; oxidoreducta 37.2 52 0.0018 29.5 6.1 55 514-569 119-176 (198)
106 1uij_A Beta subunit of beta co 35.5 40 0.0014 34.8 5.4 53 512-565 49-101 (416)
107 3fz3_A Prunin; TREE NUT allerg 35.2 98 0.0033 32.9 8.3 60 506-565 388-449 (531)
108 3es4_A Uncharacterized protein 35.1 33 0.0011 28.6 3.8 47 518-569 48-94 (116)
109 2cav_A Protein (canavalin); vi 34.2 40 0.0014 35.2 5.2 54 512-566 86-139 (445)
110 2pyt_A Ethanolamine utilizatio 34.0 55 0.0019 27.7 5.3 47 516-569 61-107 (133)
111 3ibm_A Cupin 2, conserved barr 33.6 85 0.0029 27.6 6.7 48 514-566 58-105 (167)
112 1fxz_A Glycinin G1; proglycini 32.8 74 0.0025 33.4 7.0 58 508-565 334-393 (476)
113 2b8m_A Hypothetical protein MJ 32.4 48 0.0016 26.8 4.5 48 515-566 30-77 (117)
114 2e9q_A 11S globulin subunit be 32.0 1E+02 0.0035 32.2 7.8 60 506-565 316-377 (459)
115 1x82_A Glucose-6-phosphate iso 31.4 67 0.0023 29.0 5.7 52 514-565 69-129 (190)
116 2ea7_A 7S globulin-1; beta bar 30.8 54 0.0018 34.0 5.5 53 512-565 61-113 (434)
117 1y9q_A Transcriptional regulat 29.8 1.3E+02 0.0044 26.7 7.4 47 515-566 107-155 (192)
118 3rns_A Cupin 2 conserved barre 29.6 99 0.0034 28.6 6.7 49 513-566 154-202 (227)
119 2f4p_A Hypothetical protein TM 29.2 80 0.0027 27.0 5.6 49 514-566 50-98 (147)
120 3es1_A Cupin 2, conserved barr 29.1 53 0.0018 29.4 4.4 49 513-565 80-128 (172)
121 3i7d_A Sugar phosphate isomera 29.1 73 0.0025 27.8 5.4 51 514-569 45-97 (163)
122 4b29_A Dimethylsulfoniopropion 29.0 71 0.0024 29.7 5.3 45 518-566 138-182 (217)
123 3jzv_A Uncharacterized protein 28.8 74 0.0025 28.1 5.4 48 514-566 55-102 (166)
124 1sfn_A Conserved hypothetical 28.7 97 0.0033 29.1 6.6 52 511-567 164-216 (246)
125 2opk_A Hypothetical protein; p 28.4 54 0.0018 26.6 4.1 37 530-569 51-87 (112)
126 4i4a_A Similar to unknown prot 28.2 1.1E+02 0.0037 25.0 6.1 48 514-566 36-83 (128)
127 3kgz_A Cupin 2 conserved barre 28.1 78 0.0027 27.6 5.3 47 514-565 46-92 (156)
128 3l2h_A Putative sugar phosphat 28.1 76 0.0026 27.4 5.3 47 514-565 48-96 (162)
129 2vpv_A Protein MIF2, MIF2P; nu 28.1 60 0.002 28.9 4.5 33 530-567 108-140 (166)
130 1o4t_A Putative oxalate decarb 27.7 1E+02 0.0034 25.7 5.8 48 514-566 59-107 (133)
131 2qnk_A 3-hydroxyanthranilate 3 26.7 74 0.0025 30.8 5.1 50 524-575 44-93 (286)
132 3ksc_A LEGA class, prolegumin; 24.5 1.7E+02 0.0058 30.8 8.0 60 506-565 352-413 (496)
133 4axo_A EUTQ, ethanolamine util 24.5 89 0.0031 27.2 4.9 30 532-566 84-113 (151)
134 1lr5_A Auxin binding protein 1 24.3 89 0.0031 27.0 5.0 53 514-566 43-99 (163)
135 1sfn_A Conserved hypothetical 23.4 1.4E+02 0.0049 27.9 6.7 48 514-568 52-99 (246)
136 3bu7_A Gentisate 1,2-dioxygena 23.4 90 0.0031 31.9 5.4 50 514-568 296-345 (394)
137 3bu7_A Gentisate 1,2-dioxygena 22.7 77 0.0026 32.4 4.8 48 515-566 126-173 (394)
138 1vj2_A Novel manganese-contain 22.5 97 0.0033 25.4 4.7 48 514-566 50-97 (126)
139 3d0j_A Uncharacterized protein 22.4 97 0.0033 26.6 4.5 40 527-566 45-87 (140)
140 1sq4_A GLXB, glyoxylate-induce 22.3 1.5E+02 0.0053 28.4 6.7 50 512-566 191-241 (278)
141 3qac_A 11S globulin SEED stora 22.2 2.3E+02 0.0078 29.5 8.3 60 506-565 317-378 (465)
142 3cew_A Uncharacterized cupin p 22.1 1.2E+02 0.0042 24.6 5.3 48 514-566 28-77 (125)
143 1juh_A Quercetin 2,3-dioxygena 21.7 1.1E+02 0.0039 30.4 5.8 34 532-565 71-104 (350)
144 1sef_A Conserved hypothetical 21.3 1.6E+02 0.0054 28.0 6.6 49 513-566 183-232 (274)
145 3kgl_A Cruciferin; 11S SEED gl 21.1 1.9E+02 0.0066 30.1 7.4 60 506-565 317-378 (466)
146 2phl_A Phaseolin; plant SEED s 20.9 95 0.0032 31.7 5.0 52 512-564 52-103 (397)
147 3h7j_A Bacilysin biosynthesis 20.8 1.5E+02 0.005 27.7 6.1 48 513-565 35-82 (243)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=8e-30 Score=266.97 Aligned_cols=157 Identities=26% Similarity=0.383 Sum_probs=54.1
Q ss_pred hhHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 007880 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRK 442 (586)
Q Consensus 365 ~~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~ 442 (586)
+..|..|+||+++|||| |||++|.|. .|+++++++|++|++++|+++|.+++.+.+...+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~-~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~----------------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSF-AGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR----------------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 46799999999999999 999999995 9999999999999999999999998877532110
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCC
Q 007880 443 RQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKG 522 (586)
Q Consensus 443 ~~lp~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~g 522 (586)
+++.+ +.+.++++|+|++++++.++.++..++++.|.||
T Consensus 221 -----------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~g 259 (355)
T 3beh_A 221 -----------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAG 259 (355)
T ss_dssp -----------HHHHH------------------------------HHC-------------------------------
T ss_pred -----------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCC
Confidence 00100 2357888999999999999999999999999999
Q ss_pred CEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 523 EVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 523 e~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
|.|+++||.++++|||.+|.|+++... ...+++|++|||.+...+.++.++..+...|
T Consensus 260 e~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~ 317 (355)
T 3beh_A 260 AVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEMALISGEPRSATVSAATTV 317 (355)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEeehHHhCCCCcceEEEECccE
Confidence 999999999999999999999997532 2589999999999977777776666665543
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.94 E-value=1.8e-27 Score=230.36 Aligned_cols=166 Identities=23% Similarity=0.463 Sum_probs=144.3
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHHHHHHHhc
Q 007880 416 KVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQ 495 (586)
Q Consensus 416 ~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 495 (586)
++|++++++++.+|+++++.+++||+.+++|++|+.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999998899999999999999999999999998777 8
Q ss_pred CCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCC-
Q 007880 496 VPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRC- 574 (586)
Q Consensus 496 ~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~- 574 (586)
+|+|++++++++..++..+++..|.|||+|+++||.++.+|||.+|.|+++. +| ..+..+++|++|||.++....
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN-TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS-CEEEEECTTCEEECSCCSSSSC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC-eEEEEecCCCCcCcHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999864 34 567999999999999977776
Q ss_pred -ccccceeeeccC
Q 007880 575 -EICDTTFQVHVC 586 (586)
Q Consensus 575 -~~~at~~~~~~~ 586 (586)
++.++..+...|
T Consensus 156 ~~~~~~v~a~~~~ 168 (212)
T 3ukn_A 156 IKTNANVKALTYC 168 (212)
T ss_dssp CBBCSEEEESSCE
T ss_pred CCcceEEEEcccE
Confidence 777777776654
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.94 E-value=1.1e-26 Score=222.40 Aligned_cols=163 Identities=22% Similarity=0.372 Sum_probs=147.8
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHHHHHHHhcCCcc
Q 007880 420 HATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 499 (586)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF 499 (586)
+++++++.+|+++++.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 4688999999999999999999999999999999999999998 578899999999999999999999999999999999
Q ss_pred cCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCCccccc
Q 007880 500 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRCEICDT 579 (586)
Q Consensus 500 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~~~~at 579 (586)
++++++++..++..+++..|.||++|+++|+.++.+|||.+|.|+++. .+|. .+..+++|++|||.++....++.++
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~-~~~~l~~G~~fGe~~~~~~~~~~~~ 156 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV-IATSLSDGSYFGEICLLTRERRVAS 156 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC-EEEEECTTCEESCHHHHHSSCCSSE
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe-EEEEecCCCEechHHHcCCCccceE
Confidence 999999999999999999999999999999999999999999999975 4555 6799999999999986666666666
Q ss_pred eeeeccC
Q 007880 580 TFQVHVC 586 (586)
Q Consensus 580 ~~~~~~~ 586 (586)
..+...|
T Consensus 157 ~~a~~~~ 163 (198)
T 2ptm_A 157 VKCETYC 163 (198)
T ss_dssp EEESSCE
T ss_pred EEEeeEE
Confidence 6665543
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.93 E-value=5.3e-26 Score=218.46 Aligned_cols=162 Identities=25% Similarity=0.403 Sum_probs=145.7
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHHHHHHHhcCCcc
Q 007880 420 HATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 499 (586)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF 499 (586)
+++++++.+|+++++.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||+.||.++..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4789999999999999999999999999999999999999998 578899999999999999999999999999999999
Q ss_pred cCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCCccccc
Q 007880 500 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRCEICDT 579 (586)
Q Consensus 500 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~~~~at 579 (586)
++++++++..++..+++..|.||++|+++|+.++.+|||.+|.|+++. .+|.. ..+++|++|||.+++...++.++
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~--~~l~~G~~fGe~~~~~~~~~~~~ 156 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE--MKLSDGSYFGEICLLTRGRRTAS 156 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC--EEEETTCEECHHHHHHCSBCSSE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE--EEEcCCCEeccHHHhcCCCcccE
Confidence 999999999999999999999999999999999999999999999964 45543 47899999999986666666766
Q ss_pred eeeeccC
Q 007880 580 TFQVHVC 586 (586)
Q Consensus 580 ~~~~~~~ 586 (586)
..+...|
T Consensus 157 v~a~~~~ 163 (202)
T 3bpz_A 157 VRADTYC 163 (202)
T ss_dssp EEESSCE
T ss_pred EEEeeEE
Confidence 6665543
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=3e-22 Score=195.50 Aligned_cols=209 Identities=12% Similarity=0.185 Sum_probs=135.8
Q ss_pred hhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHhhheeEEeecCcccccccccc
Q 007880 87 EWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADD 166 (586)
Q Consensus 87 ~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~ 166 (586)
.||.+++++++++++..++.... .. +.+....+..+|.+++++|.+|+++||.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~-~~---------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTM-QL---------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHH-HH---------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-cc---------ChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 48888888888887765543111 11 1223456778999999999999999996642
Q ss_pred CCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhhhhccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007880 167 EDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLR 246 (586)
Q Consensus 167 ~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~ll~~~~l~~rl~rl~Rl~~l~~ 246 (586)
+ .++|+ |+ +++|++|++|++..... .. +. +....++.+| ++|++|+.|+.+
T Consensus 65 ---------~----~~~y~--~~-~iiDllailP~~~~~~~---~~--~~-~~~~~lr~lR-------llRllR~~r~~~ 115 (223)
T 1orq_C 65 ---------D----PAGYV--KK-TLYEIPALVPAGLLALI---EG--HL-AGLGLFRLVR-------LLRFLRILLIIS 115 (223)
T ss_dssp ---------C----HHHHH--HH-HHHHCTTHHHHHHHHHH---HH--HH-HTTTCHHHHH-------HHHHHHHHHHHH
T ss_pred ---------c----HHHHH--HH-hHHHHHHHHHHHHHHHH---hc--ch-hHHHHHHHHH-------HHHHHHHHHHHH
Confidence 1 37999 66 99999999999765321 00 00 0011123332 334444444433
Q ss_pred HhhhhcccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhcCCCcccccccCCCcccCcccccccc
Q 007880 247 RMQNLSGYIFGTVW-WGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDR 325 (586)
Q Consensus 247 ~l~~~~~~~~~~~~-~~~~~~l~~~~l~~H~~aC~~~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~~~y~~~~~~~~~ 325 (586)
..++..+.+..... .++...++..++..|+.||++|++...
T Consensus 116 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~-------------------------------------- 157 (223)
T 1orq_C 116 RGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYP-------------------------------------- 157 (223)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------------------
Confidence 22211011100000 123334444566789999999884210
Q ss_pred cchhhhhccccccccccCCCCCcccchhhhhhhhccchhhhHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHH
Q 007880 326 ARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTS 403 (586)
Q Consensus 326 ~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~ 403 (586)
. +++...+|..|+||+++|||| |||++|.|. .|+++++++|++
T Consensus 158 ~----------------------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~-~~~~~~~~~~~~ 202 (223)
T 1orq_C 158 D----------------------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATP-IGKVIGIAVMLT 202 (223)
T ss_dssp S----------------------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHH
T ss_pred C----------------------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCH-hHHHHHHHHHHH
Confidence 0 011235799999999999999 999999994 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007880 404 GLLLVTMLIGNIKVFLHA 421 (586)
Q Consensus 404 G~~~fa~iig~i~~il~~ 421 (586)
|++++|+++|.+++.+++
T Consensus 203 G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 203 GISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.84 E-value=3.7e-21 Score=209.41 Aligned_cols=317 Identities=10% Similarity=0.078 Sum_probs=153.4
Q ss_pred CCccccCCCcCcccCCC-ChhHHhhhHHHHHHHHHHHhhhchheeeeeccCcceee-----------------eecCcch
Q 007880 65 GRRRRSNWSFGQVLDPR-AKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCL-----------------FVDGWFA 126 (586)
Q Consensus 65 ~~~r~~~w~~~~vi~P~-s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~-----------------~~~~~~~ 126 (586)
...|+..| ..+.+|. |...+.|+.+++++++.++++..+.- .|.+....... .....+.
T Consensus 162 ~~~r~~lw--~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2r9r_B 162 NEFQRQVW--LLFEYPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFT 238 (514)
T ss_dssp CSSHHHHH--HTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCC
T ss_pred HHHHHHHH--HHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhh
Confidence 44566677 5567887 56778889888888877776654431 11111100000 0001123
Q ss_pred hhhHHHHHHHHHHHHHHHHhhheeEEeecCccccccccccCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhhhhh
Q 007880 127 ITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVL 206 (586)
Q Consensus 127 ~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~i~~ 206 (586)
..+.++|.++.++|++|+++||.++- + .++|++ ..|.++|+++++|+.+.+.
T Consensus 239 ~~l~~ie~i~~~iFtiE~ilR~~~~~---------------~------------k~~Y~k-s~wniiDli~iip~~i~l~ 290 (514)
T 2r9r_B 239 DPFFIVETLCIIWFSFEFLVRFFACP---------------S------------KAGFFT-NIMNIIDIVAIIPYYVTIF 290 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSS---------------C------------SSSSTT-SHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC---------------c------------HHHHHh-chhHHHHHHHHHHHHHHHH
Confidence 45778999999999999999995431 0 136885 3689999999999854432
Q ss_pred hhccccccccchH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007880 207 WVVIPALLERGSI-TLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLG 285 (586)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~~ll~~~~l~~rl~rl~Rl~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~~~~i~ 285 (586)
. +.....+.. ...+..+++++++ |++|++|+.|....++.....+ ......+..++++++++.+++|++.|++-
T Consensus 291 ~---~~~~~~~~~~~~~~~~lrvlRll-RvlRilkL~r~~~~l~~l~~tl-~~s~~~l~~ll~~l~i~~~if~~~~~~~e 365 (514)
T 2r9r_B 291 L---TESNKSVLQFQNVRRVVQIFRIM-RILRIFKLSRHSKGLQILGQTL-KASMRELGLLIFFLFIGVILFSSAVYFAE 365 (514)
T ss_dssp H---HHTSCSHHHHHTTHHHHHHHHHH-GGGGGGGGGGSCHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---hhccccchhhhhHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 1 110001110 1112233333222 2334444443333333321111 12222233333444556777888877631
Q ss_pred hhhhhhhHHHhhhhcCCCcccccccCCCcccCcccccccccchhhhhccccccccccCCCCCcccchhhhhhhhccchhh
Q 007880 286 IQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRL 365 (586)
Q Consensus 286 ~~~~~~~~~~~c~~~~~c~~~~l~c~~~~~y~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~ 365 (586)
. | .+.+.+
T Consensus 366 ~-------------------------------------------~-----------------------------~~~~~F 373 (514)
T 2r9r_B 366 A-------------------------------------------D-----------------------------ERDSQF 373 (514)
T ss_dssp T-------------------------------------------T-----------------------------CTTCSC
T ss_pred c-------------------------------------------c-----------------------------CCCccc
Confidence 0 0 011223
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHc
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKR 443 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~ 443 (586)
..|..|+||+++|||| |||+.|.|. .++++++++|++|++++++++|.+.+.++....++++ ++....-++++.-.
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~-~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg 451 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTI-GGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSP 451 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----------------
T ss_pred cchhhhhheeeeEEEecccCCCCCCCc-chHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeC
Confidence 5688999999999999 999999994 9999999999999999999999999988877664332 22222333344433
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCChhHhhhcCCchhHHHHHHHHHHHHHhcCCcc
Q 007880 444 QLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLF 499 (586)
Q Consensus 444 ~lp~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF 499 (586)
..|.....+ + ++.+....+.-..+|.+.++.++............+..
T Consensus 452 ~~~~~~~l~--~------~~~~~~~~~s~~~el~e~~~~~~~~~~~~~~~~~~~~~ 499 (514)
T 2r9r_B 452 KIPSSPDLK--K------SRSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTL 499 (514)
T ss_dssp --------------------------------------------------------
T ss_pred CCccchhHH--h------cccCCCcccccccccccccccccccccccccccCCccc
Confidence 334332211 0 11222334455567778887777655444333333333
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.59 E-value=9.9e-15 Score=133.46 Aligned_cols=113 Identities=22% Similarity=0.365 Sum_probs=93.2
Q ss_pred hhHhhhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEE
Q 007880 469 ECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI 548 (586)
Q Consensus 469 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~ 548 (586)
.+++++.||+.||.++..+++.+.++++|+|++++++.+..++..++.+.|.+|+.|+++|+.++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ecCCcEEEEEeCCCCEEeecCCCCC--Cccccceeeecc
Q 007880 549 LHNNIKSCCMLGPGNFSGIWPGSRR--CEICDTTFQVHV 585 (586)
Q Consensus 549 ~~~~~~~i~~l~~G~~FGE~~~~~~--~~~~at~~~~~~ 585 (586)
....+..+++|++|||.+.... .++.++..+...
T Consensus 84 ---~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~ 119 (160)
T 4f8a_A 84 ---DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTY 119 (160)
T ss_dssp ---TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSC
T ss_pred ---CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCc
Confidence 3457789999999999997766 466666666544
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.57 E-value=6.2e-15 Score=134.19 Aligned_cols=66 Identities=14% Similarity=0.332 Sum_probs=55.5
Q ss_pred hhHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q 007880 365 LEKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQL 431 (586)
Q Consensus 365 ~~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~ 431 (586)
+..|..|+||+++|||| |||++|.|. .+++++++++++|++++|+++|.+++.+.+...++++..+
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~-~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~~~ 149 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTL-WGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFV 149 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-------
T ss_pred cCcccceeheeeeeeecccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999995 9999999999999999999999999999988765544433
No 9
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.46 E-value=1.2e-12 Score=118.75 Aligned_cols=85 Identities=25% Similarity=0.352 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hchHHHHHHHHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKV------FLHA----TTSKKQAMQLKMR 434 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~ 434 (586)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|+.++++.++.+++ +... .++...+..++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~ 130 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTD-FGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLE 130 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999 999999995 99999999999999999999999987 3332 3555666778899
Q ss_pred HHHHHHHHcCCChHHHHH
Q 007880 435 NIEWWMRKRQLPQGFRQR 452 (586)
Q Consensus 435 ~l~~~m~~~~lp~~L~~r 452 (586)
++++++++++.|++|+.|
T Consensus 131 ~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 131 AIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHTTC------
T ss_pred HHHHHHHhcCCCcCCCCC
Confidence 999999999999999876
No 10
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.44 E-value=1.1e-13 Score=123.53 Aligned_cols=91 Identities=14% Similarity=0.299 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQ 444 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~ 444 (586)
.|+.|+||+++|||| |||++|.|. .|+++++++|++|++++|++++.+++.+.+....+.+.++.....+...+..+
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTP-IGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPD 121 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC-------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 488999999999999 999999994 99999999999999999999999999987766555544444333344445566
Q ss_pred CChHHHHHHHHHHH
Q 007880 445 LPQGFRQRVRNYER 458 (586)
Q Consensus 445 lp~~L~~rV~~y~~ 458 (586)
++++....+++|.+
T Consensus 122 l~~~~i~~l~~~l~ 135 (137)
T 4h33_A 122 LTKEEIAVVEQFLT 135 (137)
T ss_dssp --------------
T ss_pred ccHHHHHHHHHHHh
Confidence 77777777776654
No 11
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.42 E-value=6.2e-13 Score=116.34 Aligned_cols=58 Identities=14% Similarity=0.328 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|+.++|+++|.+++.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999 999999995 999999999999999999999999999987654
No 12
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.41 E-value=4.8e-13 Score=119.48 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=96.0
Q ss_pred cCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE
Q 007880 475 NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK 554 (586)
Q Consensus 475 ~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~ 554 (586)
++|+.+|.+...+...+.++++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|.+.. +| +
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g-~ 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG-V 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT-E
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC-E
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999854 44 4
Q ss_pred EEEEeCCCCEEeecCCCCCCccccceeeecc
Q 007880 555 SCCMLGPGNFSGIWPGSRRCEICDTTFQVHV 585 (586)
Q Consensus 555 ~i~~l~~G~~FGE~~~~~~~~~~at~~~~~~ 585 (586)
.+..+++|++|||.+.+...++.++..+...
T Consensus 83 ~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~ 113 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAILYNCTRTATVKTLVN 113 (139)
T ss_dssp EEEEECTTCEESCHHHHHCCCCSSEEEESSC
T ss_pred EEEEeCCCCEeccHHHHCCCCcceEEEECcc
Confidence 7799999999999986666677666666544
No 13
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.33 E-value=5.2e-12 Score=113.28 Aligned_cols=59 Identities=14% Similarity=0.348 Sum_probs=53.4
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSK 425 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~ 425 (586)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|+++++++++.+++.+.+...+
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSS-HHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999 999999995 9999999999999999999999999988655443
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.32 E-value=5.4e-12 Score=115.63 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEE
Q 007880 479 GLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCC 557 (586)
Q Consensus 479 ~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~ 557 (586)
.-|.+.......+.|+++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++. ..+|+. .+.
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~ 104 (161)
T 3idb_B 26 HPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVG 104 (161)
T ss_dssp CCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEE
T ss_pred CCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEE
Confidence 344455556677899999999999999999999999999999999999999999999999999999987 556654 458
Q ss_pred EeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 558 MLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 558 ~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
.+++|++|||.+.+...++.++..+...|
T Consensus 105 ~~~~G~~fGe~~~~~~~~~~~~v~A~~~~ 133 (161)
T 3idb_B 105 NYDNRGSFGELALMYNTPRAATITATSPG 133 (161)
T ss_dssp EEESCCEECGGGGTCCCCCSSEEEESSSE
T ss_pred EcCCCCEechHHHHcCCCcccEEEECCCe
Confidence 99999999999988888887777766543
No 15
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.29 E-value=9.4e-12 Score=126.07 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=100.7
Q ss_pred hHhhhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEe
Q 007880 470 CEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL 549 (586)
Q Consensus 470 ~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~ 549 (586)
.....++|+..|.+...+...+.++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|.+..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 445568999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cCCcEEEEEeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 550 HNNIKSCCMLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 550 ~~~~~~i~~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
+| ..+..+++|++|||.+.+...++.++..+...|
T Consensus 96 -~g-~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~ 130 (299)
T 3shr_A 96 -EG-VKLCTMGPGKVFGELAILYNCTRTATVKTLVNV 130 (299)
T ss_dssp -TT-EEEEEECTTCEESCSGGGTTTBCCSEEEESSCE
T ss_pred -CC-EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCe
Confidence 34 567899999999999988888888888776654
No 16
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.28 E-value=8.9e-12 Score=117.48 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=93.2
Q ss_pred CCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-
Q 007880 476 LPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK- 554 (586)
Q Consensus 476 Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~- 554 (586)
+....+.+.......+.++++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|.++....+|++
T Consensus 24 li~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~ 103 (187)
T 3gyd_A 24 LVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQ 103 (187)
T ss_dssp CEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEE
T ss_pred HhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeE
Confidence 3333455666677789999999999999999999999999999999999999999999999999999999987777765
Q ss_pred EEEEeCCCCEEeecCCCCCCccccceeeecc
Q 007880 555 SCCMLGPGNFSGIWPGSRRCEICDTTFQVHV 585 (586)
Q Consensus 555 ~i~~l~~G~~FGE~~~~~~~~~~at~~~~~~ 585 (586)
.+..+++|++|||.+.+...++.++..+...
T Consensus 104 ~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~ 134 (187)
T 3gyd_A 104 TIAKVGAGAIIGEMSMIDGMPRSASCVASLP 134 (187)
T ss_dssp EEEEEETTCEESHHHHHHCCCCSSEEEEEEE
T ss_pred EEEEccCCCeeeeHHHhCCCCeeEEEEECCC
Confidence 4589999999999986656666666665543
No 17
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.28 E-value=6.6e-12 Score=111.29 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=88.4
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEec-CCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE
Q 007880 477 PEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFT-KGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS 555 (586)
Q Consensus 477 p~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~-~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~ 555 (586)
||+.|.+-......+.++++++|+.++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|.++. .+|..
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE-
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE-
Confidence 56667766666677899999999999999999999999999999 999999999999999999999999974 55654
Q ss_pred EEEeCCCCEEeecCCCCCCccccce-eeec
Q 007880 556 CCMLGPGNFSGIWPGSRRCEICDTT-FQVH 584 (586)
Q Consensus 556 i~~l~~G~~FGE~~~~~~~~~~at~-~~~~ 584 (586)
..+++|++||+.+.+...++.++. .+..
T Consensus 79 -~~l~~G~~fG~~~~~~~~~~~~~~~~a~~ 107 (134)
T 2d93_A 79 -ENLFMGNSFGITPTLDKQYMHGIVRTKVD 107 (134)
T ss_dssp -EEECTTCEESCCSSSCCEECCSEEEESSS
T ss_pred -EEecCCCccChhHhcCCCcceeEEEEEec
Confidence 679999999999977766665555 4443
No 18
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.26 E-value=8.5e-12 Score=111.24 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=81.0
Q ss_pred HHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCc-EE---EEEeCCCCEEe
Q 007880 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI-KS---CCMLGPGNFSG 566 (586)
Q Consensus 491 ~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~-~~---i~~l~~G~~FG 566 (586)
+.++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|+|.+|.|.++....+|+ .. +..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 578899999999999999999999999999999999999999999999999999987655664 34 68999999999
Q ss_pred ecCCCCCCccccceeeeccC
Q 007880 567 IWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 567 E~~~~~~~~~~at~~~~~~~ 586 (586)
|.+.....++.++..+...|
T Consensus 86 ~~~~~~~~~~~~~~~a~~~~ 105 (142)
T 3mdp_A 86 VSSLIKPYHYTSSARATKPV 105 (142)
T ss_dssp GGGSSTTCBCSSEEEESSCE
T ss_pred hHHHcCCCCceEEEEECCcE
Confidence 99988888887777766543
No 19
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.24 E-value=2.4e-11 Score=109.10 Aligned_cols=96 Identities=20% Similarity=0.340 Sum_probs=84.2
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeec
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIW 568 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~ 568 (586)
.+.++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 357899999999999999999999999999999999999999999999999999998876666654 5899999999999
Q ss_pred CCCCCCccccceeeecc
Q 007880 569 PGSRRCEICDTTFQVHV 585 (586)
Q Consensus 569 ~~~~~~~~~at~~~~~~ 585 (586)
+.....++.++..+...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTE 100 (149)
T ss_dssp GGTSCEECSSEEEESSC
T ss_pred HhcCCCCcceEEEEccc
Confidence 87777677766666544
No 20
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.23 E-value=1.6e-11 Score=123.94 Aligned_cols=62 Identities=6% Similarity=0.136 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHhhhhccc--cc-ccc-ccccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q 007880 364 RLEKILFPIFWGLMTLST--FG-NLE-STTEWLE----VVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK 426 (586)
Q Consensus 364 ~~~~Y~~slYwa~~TmtT--yG-Di~-p~t~~~E----~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~ 426 (586)
.+..+..|+||+++|+|| || |+. |.+. .. ..+.+++++.|.++.+.++|.+.+-++....++
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~-~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~ 246 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLME-VYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKE 246 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHT-TCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-cCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999 99 985 8874 43 788999999999999999999999887665443
No 21
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.20 E-value=3.6e-11 Score=109.27 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 487 ~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
....++++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++. +| +.+..+++|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~-~~~~~~~~G~~fG 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN-EWATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TT-EEEEEECTTCEEC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CC-EEEEEecCCCEee
Confidence 4456789999999999999999999999999999999999999999999999999999975 33 4678999999999
Q ss_pred ecCCCCCCccccceeeecc
Q 007880 567 IWPGSRRCEICDTTFQVHV 585 (586)
Q Consensus 567 E~~~~~~~~~~at~~~~~~ 585 (586)
|.+.+...++.++..+...
T Consensus 110 e~~~~~~~~~~~~v~A~~~ 128 (154)
T 3pna_A 110 ELALIYGTPRAATVKAKTN 128 (154)
T ss_dssp CHHHHHCCCCSSEEEESSC
T ss_pred ehHhhcCCCcceEEEECcc
Confidence 9986666666666665544
No 22
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.19 E-value=4.3e-11 Score=108.18 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=80.0
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeec
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIW 568 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~ 568 (586)
.+.++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 468999999999999999999999999999999999999999999999999999998655556543 5899999999999
Q ss_pred CCCCCCc-cccceeeecc
Q 007880 569 PGSRRCE-ICDTTFQVHV 585 (586)
Q Consensus 569 ~~~~~~~-~~at~~~~~~ 585 (586)
+.....+ +.++..+...
T Consensus 91 ~~~~~~~~~~~~~~a~~~ 108 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVP 108 (154)
T ss_dssp GGGSSCSBCSSEEEESSS
T ss_pred hhccCCCCCceEEEEccc
Confidence 9766655 6666555443
No 23
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.14 E-value=2.3e-11 Score=103.05 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=53.0
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
..|..|+||+++|||| |||++|.|. .+++++++.+++|+.+++++++.+++.+.+..+
T Consensus 39 ~~~~~a~y~~~~T~tTvGyGDi~P~t~-~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 39 ISYPDAIWWSVETATTVGYGDRYPVTE-EGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CCGGGTTTTTTGGGGCCSCCSSCCCSS-SCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999 999999995 999999999999999999999999998876554
No 24
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.13 E-value=9.4e-11 Score=112.44 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=78.6
Q ss_pred HhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEEeecCCC
Q 007880 493 VRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGIWPGS 571 (586)
Q Consensus 493 l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~FGE~~~~ 571 (586)
|+++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++ .+..+++|++|||.+..
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46889999999999999999999999999999999999999999999999999887677765 45899999999998866
Q ss_pred CCCccccceeeecc
Q 007880 572 RRCEICDTTFQVHV 585 (586)
Q Consensus 572 ~~~~~~at~~~~~~ 585 (586)
...++.++..+...
T Consensus 81 ~~~~~~~~~~a~~~ 94 (216)
T 4ev0_A 81 DEGERSASAVAVED 94 (216)
T ss_dssp HCCBCSSEEEESSS
T ss_pred CCCCcceEEEEcCC
Confidence 55566666555543
No 25
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.12 E-value=8.4e-11 Score=120.98 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=87.7
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
.+.|+++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|.++....+|++.+..+++|++|||.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 47889999999999999999999999999999999999999999999999999999987778887779999999999999
Q ss_pred CCCCCccccceeeeccC
Q 007880 570 GSRRCEICDTTFQVHVC 586 (586)
Q Consensus 570 ~~~~~~~~at~~~~~~~ 586 (586)
.+...++.++..+...|
T Consensus 92 l~~~~~~~~~v~A~~~~ 108 (333)
T 4ava_A 92 LLRDSPRSATVTTIEPL 108 (333)
T ss_dssp HHHTCBCSSEEEESSCE
T ss_pred hcCCCCceEEEEEecCE
Confidence 77777777777666543
No 26
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.11 E-value=1.3e-10 Score=112.85 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=84.4
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeec
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIW 568 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~ 568 (586)
.++|+++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++|||.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 368899999999999999999999999999999999999999999999999999998876677654 5899999999999
Q ss_pred CCCCCCccccceeeeccC
Q 007880 569 PGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 569 ~~~~~~~~~at~~~~~~~ 586 (586)
+.....++.++..+...|
T Consensus 85 ~~~~~~~~~~~~~a~~~~ 102 (231)
T 3e97_A 85 AVLAHQERSASVRALTPV 102 (231)
T ss_dssp TTTCCCCCCEEEEESSCE
T ss_pred HHhCCCCceEEEEECCcE
Confidence 987777777776665543
No 27
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.10 E-value=2.1e-10 Score=122.01 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCc-EEEEEe
Q 007880 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI-KSCCML 559 (586)
Q Consensus 481 r~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~-~~i~~l 559 (586)
|.+-......+.|+++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|.++. ..+|. ..+..+
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l 213 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNY 213 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEe
Confidence 4555566678999999999999999999999999999999999999999999999999999999987 44554 456899
Q ss_pred CCCCEEeecCCCCCCccccceeeeccC
Q 007880 560 GPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 560 ~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
++|++|||++.+..+++.++..+...|
T Consensus 214 ~~G~~fGe~all~~~pr~atv~A~~d~ 240 (416)
T 3tnp_B 214 DNRGSFGELALMYNTPKAATITATSPG 240 (416)
T ss_dssp ESCCEECGGGGTSCCCCSSEEEESSSE
T ss_pred cCCCEEeeHHHhcCCCcccEEEEccCe
Confidence 999999999999999999888876654
No 28
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.09 E-value=3e-10 Score=122.57 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=100.1
Q ss_pred cCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCc-
Q 007880 475 NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI- 553 (586)
Q Consensus 475 ~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~- 553 (586)
..|+..|.+...+...+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|.++....+|.
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 4678889888888889999999999999999999999999999999999999999999999999999999988666664
Q ss_pred --EEEEEeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 554 --KSCCMLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 554 --~~i~~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
..+..+++|++|||.+ +...++.++..+...|
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~ 139 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-LDNTPRHATIVTRESS 139 (469)
T ss_dssp GCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSE
T ss_pred cceEEEEccCCCCcchhh-hCCCCccceEEEccce
Confidence 5678999999999999 8888888887776544
No 29
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.09 E-value=1.2e-10 Score=112.71 Aligned_cols=96 Identities=13% Similarity=0.321 Sum_probs=83.1
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeec
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIW 568 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~ 568 (586)
.+.++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++|||.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 357899999999999999999999999999999999999999999999999999998877677654 5899999999999
Q ss_pred CCCCCCccccceeeecc
Q 007880 569 PGSRRCEICDTTFQVHV 585 (586)
Q Consensus 569 ~~~~~~~~~at~~~~~~ 585 (586)
+.....++.++..+...
T Consensus 85 ~~~~~~~~~~~~~A~~~ 101 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITE 101 (227)
T ss_dssp HHHSCSCCSSEEEESSC
T ss_pred HHcCCCCceeEEEEccc
Confidence 86555566666555543
No 30
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.09 E-value=1.3e-10 Score=113.41 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEE
Q 007880 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFS 565 (586)
Q Consensus 487 ~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~F 565 (586)
....+.++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 344678999999999999999999999999999999999999999999999999999998877777654 5899999999
Q ss_pred eecCCCCCCccccceeeecc
Q 007880 566 GIWPGSRRCEICDTTFQVHV 585 (586)
Q Consensus 566 GE~~~~~~~~~~at~~~~~~ 585 (586)
|+.+.....++.++..+...
T Consensus 87 G~~~~~~~~~~~~~~~a~~~ 106 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTP 106 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSS
T ss_pred chHHHhcCCCCCceEEECCc
Confidence 99986555556655555443
No 31
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.09 E-value=1.2e-10 Score=109.87 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=81.6
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeec
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIW 568 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~ 568 (586)
..+++++|.|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 456778899999999999999999999999999999999999999999999999999877777655 4789999999998
Q ss_pred -CCCCCCccccceeeecc
Q 007880 569 -PGSRRCEICDTTFQVHV 585 (586)
Q Consensus 569 -~~~~~~~~~at~~~~~~ 585 (586)
++....++.++..+...
T Consensus 86 ~~~~~~~~~~~~~~a~~~ 103 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVEN 103 (194)
T ss_dssp HHHHHTCBCSSEEEESSC
T ss_pred HHHhcCCCCceEEEEECC
Confidence 44555556565555443
No 32
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.08 E-value=5.7e-10 Score=96.09 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 427 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~ 427 (586)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|+.++++.++.+++.++..+...+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999 999999995 999999999999999999999999999855554433
No 33
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.4e-10 Score=113.47 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=82.7
Q ss_pred HHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeec
Q 007880 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIW 568 (586)
Q Consensus 489 ~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~ 568 (586)
..+.|+++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|.++. ++. .+..+++|++|||.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~-~~~~~~~g~~fGe~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN-KVNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS-CCEEECTTCEECHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE-EEEecCCCCeeehh
Confidence 45789999999999999999999999999999999999999999999999999999864 343 46899999999999
Q ss_pred CCCCCCccccceeeeccC
Q 007880 569 PGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 569 ~~~~~~~~~at~~~~~~~ 586 (586)
+.+...++.++..+...|
T Consensus 81 ~l~~~~~~~~tv~a~~~~ 98 (246)
T 3of1_A 81 ALMYNSPRAATVVATSDC 98 (246)
T ss_dssp HHHHTCCCSSEEEESSCE
T ss_pred HHhcCCCCCcEEEECCCe
Confidence 977777777777766543
No 34
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.06 E-value=1e-09 Score=110.42 Aligned_cols=98 Identities=16% Similarity=0.270 Sum_probs=85.2
Q ss_pred HHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCc--EEEEEeCCCCEE
Q 007880 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI--KSCCMLGPGNFS 565 (586)
Q Consensus 488 ~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~--~~i~~l~~G~~F 565 (586)
+...+++++++|+++++..+..++..++...|.+|++|+++|+.++.+|+|.+|.|.+.....+|. ..+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 345677889999999999999999999999999999999999999999999999999987555542 457899999999
Q ss_pred eecCCCCCCccccceeeecc
Q 007880 566 GIWPGSRRCEICDTTFQVHV 585 (586)
Q Consensus 566 GE~~~~~~~~~~at~~~~~~ 585 (586)
||.+.+...++.++..+...
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~ 253 (291)
T 2qcs_B 234 GEIALLMNRPKAATVVARGP 253 (291)
T ss_dssp CSGGGTCCCCCSSEEEEEEE
T ss_pred cHHHHcCCCCcceEEEECCc
Confidence 99998887777777776654
No 35
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.06 E-value=1.8e-10 Score=111.37 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=84.3
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEEeec
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGIW 568 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~FGE~ 568 (586)
.+.++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++ .+..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 46889999999999999999999999999999999999999999999999999999876566654 45899999999999
Q ss_pred CCCCCCc-cccceeeeccC
Q 007880 569 PGSRRCE-ICDTTFQVHVC 586 (586)
Q Consensus 569 ~~~~~~~-~~at~~~~~~~ 586 (586)
+.....+ +.++..+...|
T Consensus 88 ~~~~~~~~~~~~~~a~~~~ 106 (227)
T 3dkw_A 88 MMFMDTPNYVATAQAVVPS 106 (227)
T ss_dssp TTTTTCSBCSSCEEESSCC
T ss_pred HhcCCCCCCceEEEEcCcE
Confidence 9777766 66666665544
No 36
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.05 E-value=6.4e-10 Score=107.66 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=72.2
Q ss_pred HHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeec
Q 007880 490 LDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIW 568 (586)
Q Consensus 490 ~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~ 568 (586)
...+++.++|.+++++.+..++..++...|.+|+.|+++|+.++.+|||.+|.|.++....+|++. +..+++|++|||.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 467889999999999999999999999999999999999999999999999999999877777754 5899999999999
Q ss_pred CCCCC-Cccccceeeecc
Q 007880 569 PGSRR-CEICDTTFQVHV 585 (586)
Q Consensus 569 ~~~~~-~~~~at~~~~~~ 585 (586)
+.... .++.++..+...
T Consensus 90 ~~~~~~~~~~~~~~a~~~ 107 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQ 107 (230)
T ss_dssp GGTSCCSBCCSEEEESSC
T ss_pred hhhcCCCCceeEEEEcCc
Confidence 86554 355555555443
No 37
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.04 E-value=1.9e-10 Score=102.01 Aligned_cols=90 Identities=32% Similarity=0.441 Sum_probs=75.7
Q ss_pred HHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeec
Q 007880 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIW 568 (586)
Q Consensus 489 ~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~ 568 (586)
..+.++++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|.++.. + ...+++|++||+.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~---~---~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP---N---PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS---S---CEEECTTCEECHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeC---C---cceECCCCEeeeh
Confidence 347899999999999999999999999999999999999999999999999999998642 2 2589999999999
Q ss_pred CCCCCCccccceeeec
Q 007880 569 PGSRRCEICDTTFQVH 584 (586)
Q Consensus 569 ~~~~~~~~~at~~~~~ 584 (586)
+.+...++..+..+..
T Consensus 83 ~~~~~~~~~~~~~a~~ 98 (138)
T 1vp6_A 83 ALISGEPRSATVSAAT 98 (138)
T ss_dssp HHHHCCCCSSCEEESS
T ss_pred HhccCCCceeEEEECC
Confidence 7544444445544443
No 38
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.04 E-value=4.4e-10 Score=109.42 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=83.1
Q ss_pred HHHHHhcCCcccCCCHHHHHHhhcc--cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEE
Q 007880 489 CLDLVRQVPLFQHMDDLVLENICDR--VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFS 565 (586)
Q Consensus 489 ~~~~l~~~~lF~~~~~~~l~~l~~~--l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~F 565 (586)
....+.++|+|++++++.+..++.. ++...|.+|++|+++|+.++.+|||.+|.|.++....+|++ .+..+++|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 3467899999999999999999998 99999999999999999999999999999999876666654 45899999999
Q ss_pred eecCCCCCCc-cccceeeecc
Q 007880 566 GIWPGSRRCE-ICDTTFQVHV 585 (586)
Q Consensus 566 GE~~~~~~~~-~~at~~~~~~ 585 (586)
||.+.....+ +.++..+...
T Consensus 96 G~~~~~~~~~~~~~~~~A~~~ 116 (232)
T 1zyb_A 96 EPQSLFGMNTNYASSYVAHTE 116 (232)
T ss_dssp CGGGGSSSCCBCSSEEEESSC
T ss_pred eehHHhCCCCCCceEEEEccc
Confidence 9999766655 6666655543
No 39
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.04 E-value=4.3e-10 Score=108.08 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=82.6
Q ss_pred HHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCE--Eee
Q 007880 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNF--SGI 567 (586)
Q Consensus 491 ~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~--FGE 567 (586)
++++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 57889999999999999999999999999999999999999999999999999999877777654 489999999 789
Q ss_pred cCCCCCCccccceeeecc
Q 007880 568 WPGSRRCEICDTTFQVHV 585 (586)
Q Consensus 568 ~~~~~~~~~~at~~~~~~ 585 (586)
.+.....++.++..+...
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKD 100 (220)
T ss_dssp GGGCTTCCCCCEEEESSC
T ss_pred HHHhCCCCCceEEEEeee
Confidence 987777777776666544
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.03 E-value=6e-10 Score=112.07 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeC
Q 007880 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLG 560 (586)
Q Consensus 481 r~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~ 560 (586)
|.+-..+...+.|+++|+|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|.++. +| ..+..++
T Consensus 29 ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g-~~~~~l~ 104 (291)
T 2qcs_B 29 KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN-EWATSVG 104 (291)
T ss_dssp CCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT-EEEEEEC
T ss_pred CCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC-eEEEEcC
Confidence 3334455667899999999999999999999999999999999999999999999999999999975 44 5679999
Q ss_pred CCCEEeecCCCCCCccccceeeeccC
Q 007880 561 PGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 561 ~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
+|++|||.+.+...++.++..+...|
T Consensus 105 ~G~~fGe~~l~~~~~~~~tv~a~~~~ 130 (291)
T 2qcs_B 105 EGGSFGELALIYGTPRAATVKAKTNV 130 (291)
T ss_dssp TTCEECGGGGTCCCBCSSEEEESSCE
T ss_pred CCCccchHHHhcCCCCceEEEECCCE
Confidence 99999999988888888877766543
No 41
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.02 E-value=3.9e-10 Score=118.51 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeC
Q 007880 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLG 560 (586)
Q Consensus 481 r~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~ 560 (586)
|.+-......+.|+++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|.++. +| +.+..++
T Consensus 120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~-~~v~~l~ 195 (381)
T 4din_B 120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG-EWVTNIS 195 (381)
T ss_dssp CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT-EEEEEEE
T ss_pred CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC-eEeeeCC
Confidence 4444455667899999999999999999999999999999999999999999999999999999975 33 4678999
Q ss_pred CCCEEeecCCCCCCccccceeeeccC
Q 007880 561 PGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 561 ~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
+|++|||++.+..+++.++..+...|
T Consensus 196 ~G~~fGe~all~~~~r~atv~A~~~~ 221 (381)
T 4din_B 196 EGGSFGELALIYGTPRAATVKAKTDL 221 (381)
T ss_dssp SSCCBCGGGGTSCCBCSSEEEESSSC
T ss_pred CCCEEEchHHhcCCCcceEEEECCCE
Confidence 99999999999999999988887655
No 42
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.01 E-value=7.4e-10 Score=111.99 Aligned_cols=99 Identities=16% Similarity=0.284 Sum_probs=86.8
Q ss_pred HHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEe-cCCc-EEEEEeCCCCEE
Q 007880 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL-HNNI-KSCCMLGPGNFS 565 (586)
Q Consensus 488 ~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~-~~~~-~~i~~l~~G~~F 565 (586)
.+..+++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|+|.+|.|.++... .+|+ ..+..+++|++|
T Consensus 154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence 35678899999999999999999999999999999999999999999999999999998755 3444 456899999999
Q ss_pred eecCCCCCCccccceeeeccC
Q 007880 566 GIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 566 GE~~~~~~~~~~at~~~~~~~ 586 (586)
||.+.+...++.++..+...|
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~~ 254 (299)
T 3shr_A 234 GEKALQGEDVRTANVIAAEAV 254 (299)
T ss_dssp CGGGGSSSEECSSEEEESSSE
T ss_pred ChHHHhCCCCcceEEEECCCE
Confidence 999988888888887776543
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=98.98 E-value=5.1e-10 Score=109.37 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=81.8
Q ss_pred HHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeec
Q 007880 489 CLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIW 568 (586)
Q Consensus 489 ~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~ 568 (586)
...+++++|+|+++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|.++.. +. ..+..+++|++|||.
T Consensus 123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~--~~-~~~~~l~~g~~fGe~ 199 (246)
T 3of1_A 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKK--GQ-GVINKLKDHDYFGEV 199 (246)
T ss_dssp SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEET--TT-EEEEEEETTCEECHH
T ss_pred HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEc--CC-ceEEEcCCCCcccHH
Confidence 346778899999999999999999999999999999999999999999999999999752 22 267899999999999
Q ss_pred CCCCCCccccceeeecc
Q 007880 569 PGSRRCEICDTTFQVHV 585 (586)
Q Consensus 569 ~~~~~~~~~at~~~~~~ 585 (586)
+.+...++.++..+...
T Consensus 200 ~~~~~~~~~~~v~a~~~ 216 (246)
T 3of1_A 200 ALLNDLPRQATVTATKR 216 (246)
T ss_dssp HHHHTCBCSSEEEESSC
T ss_pred HHhCCCCcccEEEECCC
Confidence 97767777777766554
No 44
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=98.98 E-value=7e-11 Score=104.79 Aligned_cols=78 Identities=40% Similarity=0.734 Sum_probs=69.0
Q ss_pred HHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EE--EeCCCCEEee
Q 007880 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CC--MLGPGNFSGI 567 (586)
Q Consensus 491 ~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~--~l~~G~~FGE 567 (586)
++++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|.+. ...+|++. +. .+++|++|||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence 45789999999999999999999999999999999999999999999999999965 34555532 24 9999999999
Q ss_pred cC
Q 007880 568 WP 569 (586)
Q Consensus 568 ~~ 569 (586)
.+
T Consensus 85 ~~ 86 (137)
T 1wgp_A 85 EL 86 (137)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 45
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.93 E-value=2.1e-09 Score=126.83 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=94.6
Q ss_pred HhhhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEec
Q 007880 471 EMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILH 550 (586)
Q Consensus 471 ~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~ 550 (586)
..|++ +|.-|.+--.++..+.|+++++|+++++..+.+|+..|+.+.|.+|++||++||.++.+|+|.+|+|+|+....
T Consensus 23 ~~L~K-~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDK-RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHS-CSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcC-CcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 34444 33556555556666889999999999999999999999999999999999999999999999999999986422
Q ss_pred C---CcEEEEEeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 551 N---NIKSCCMLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 551 ~---~~~~i~~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
+ ....+..+++|+.||| +.+..+++.+|..+...|
T Consensus 102 ~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s 139 (999)
T 4f7z_A 102 SSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESS 139 (999)
T ss_dssp SCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSE
T ss_pred CCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccce
Confidence 2 3456789999999999 778889988888776544
No 46
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.92 E-value=4.4e-09 Score=87.77 Aligned_cols=54 Identities=22% Similarity=0.479 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 421 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 421 (586)
.|..|+||+++|+|| |||++|.|. .+++++++.+++|+.++++.++.++..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~-~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTD-FGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478899999999999 999999995 999999999999999999999999988754
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.90 E-value=4.7e-09 Score=113.11 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccEEE-EecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEe
Q 007880 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSL-IFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCML 559 (586)
Q Consensus 481 r~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~-~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l 559 (586)
|.+-......+.++++|+|++++++.+..++..++.. .|.+|++|+++||.++.+|||.+|.|.++. ++...+..+
T Consensus 327 r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~l 403 (469)
T 1o7f_A 327 RTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTL 403 (469)
T ss_dssp CCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTTEEEEEE
T ss_pred cCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCCeeEEEe
Confidence 3333344456789999999999999999999999854 899999999999999999999999999975 344577999
Q ss_pred CCCCEEeecCCCCCCccccceeeec
Q 007880 560 GPGNFSGIWPGSRRCEICDTTFQVH 584 (586)
Q Consensus 560 ~~G~~FGE~~~~~~~~~~at~~~~~ 584 (586)
++|++|||.+.+...++.++..+..
T Consensus 404 ~~G~~fGe~~ll~~~~~~~tv~a~~ 428 (469)
T 1o7f_A 404 HEGDDFGKLALVNDAPRAASIVLRE 428 (469)
T ss_dssp ETTCEECGGGGTCCSCCSSEEEESS
T ss_pred cCCCEEEEehhhcCCCceEEEEEec
Confidence 9999999999888888888777754
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=114.41 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=86.8
Q ss_pred HHHHHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCc--EEEEEeCCCCEE
Q 007880 488 LCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNI--KSCCMLGPGNFS 565 (586)
Q Consensus 488 ~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~--~~i~~l~~G~~F 565 (586)
.+..+++++++|+++++..+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|+ ..+..+++|++|
T Consensus 245 ~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~f 324 (381)
T 4din_B 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYF 324 (381)
T ss_dssp HHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEE
T ss_pred HHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEe
Confidence 345678889999999999999999999999999999999999999999999999999987544443 357899999999
Q ss_pred eecCCCCCCccccceeeeccC
Q 007880 566 GIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 566 GE~~~~~~~~~~at~~~~~~~ 586 (586)
||.+.+...++.++..+...|
T Consensus 325 Ge~all~~~~r~~tv~A~~~~ 345 (381)
T 4din_B 325 GEIALLLNRPRAATVVARGPL 345 (381)
T ss_dssp CTTGGGSCCBCSSEEEESSCB
T ss_pred chHHHhCCCCceeEEEEcCCE
Confidence 999988888888888877654
No 49
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.90 E-value=5.1e-09 Score=99.74 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=73.3
Q ss_pred CcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCC-
Q 007880 497 PLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRC- 574 (586)
Q Consensus 497 ~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~- 574 (586)
++++.++++.+..++..++...|.+|+.|+++|+.++.+|||.+|.|.++....+|++. +..+++|++||+.+.....
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 46678999999999999999999999999999999999999999999998877777654 4899999999999966655
Q ss_pred ccccceeeecc
Q 007880 575 EICDTTFQVHV 585 (586)
Q Consensus 575 ~~~at~~~~~~ 585 (586)
++.++..+...
T Consensus 82 ~~~~~~~a~~~ 92 (210)
T 3ryp_A 82 ERSAWVRAKTA 92 (210)
T ss_dssp BCSSEEEESSC
T ss_pred CceEEEEECCc
Confidence 66666655543
No 50
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.89 E-value=7.3e-09 Score=83.59 Aligned_cols=52 Identities=19% Similarity=0.491 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFL 419 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il 419 (586)
.|..|+||+++|+|| |||+.|.|+ .+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~-~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTP-LGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999 999999995 9999999999999999999999999875
No 51
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.89 E-value=7.4e-10 Score=107.52 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=74.1
Q ss_pred hcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEEeecCCCC
Q 007880 494 RQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGIWPGSR 572 (586)
Q Consensus 494 ~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~FGE~~~~~ 572 (586)
.++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++ .+..+++|++|||.+...
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 3679999999999999999999999999999999999999999999999999876555654 468999999999998554
Q ss_pred CCccccceeeec
Q 007880 573 RCEICDTTFQVH 584 (586)
Q Consensus 573 ~~~~~at~~~~~ 584 (586)
..++.++..+..
T Consensus 93 ~~~~~~~~~A~~ 104 (232)
T 2gau_A 93 EETCSSTAIAVE 104 (232)
T ss_dssp TSCCSSEEEESS
T ss_pred CCCcceEEEEec
Confidence 555555555544
No 52
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.84 E-value=5.7e-09 Score=110.88 Aligned_cols=96 Identities=13% Similarity=0.211 Sum_probs=82.1
Q ss_pred HHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecC------Cc-EEEEEeCCCC
Q 007880 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN------NI-KSCCMLGPGN 563 (586)
Q Consensus 491 ~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~------~~-~~i~~l~~G~ 563 (586)
.+++++++|+.+++..+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+ |. ..+..+++|+
T Consensus 267 ~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~ 346 (416)
T 3tnp_B 267 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQ 346 (416)
T ss_dssp SSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTC
T ss_pred HHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCC
Confidence 4677889999999999999999999999999999999999999999999999999764432 33 3568999999
Q ss_pred EEeecCCCCCCccccceeeeccC
Q 007880 564 FSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 564 ~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
+|||.+.+...++.++..+...|
T Consensus 347 ~fGE~all~~~~r~~tv~A~~~~ 369 (416)
T 3tnp_B 347 YFGELALVTNKPRAASAHAIGTV 369 (416)
T ss_dssp EESGGGGTCCSCCSSEEEEEEEE
T ss_pred EecHHHHhCCCCceeEEEEcCCe
Confidence 99999988888888888776543
No 53
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.83 E-value=1.1e-08 Score=120.78 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCcccCCCHHHHHHhhcccEEEE-ecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 487 HLCLDLVRQVPLFQHMDDLVLENICDRVKSLI-FTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 487 ~~~~~~l~~~~lF~~~~~~~l~~l~~~l~~~~-~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+...+.+.++|+|++++...+..|+..+.... +.+|++|+++||.++.+|||.+|.|+|+. ++...+..|++|++|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~~~v~~L~~Gd~F 409 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTTEEEEEEETTCEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCCcceEEecCCCcc
Confidence 34567899999999999999999999999765 46799999999999999999999999975 455678999999999
Q ss_pred eecCCCCCCccccceeeec
Q 007880 566 GIWPGSRRCEICDTTFQVH 584 (586)
Q Consensus 566 GE~~~~~~~~~~at~~~~~ 584 (586)
||+|.+...|+.+|..+..
T Consensus 410 GElALL~~~PR~aTV~a~~ 428 (999)
T 4f7z_A 410 GKLALVNDAPRAASIVLRE 428 (999)
T ss_dssp CGGGGTCSCBCSSEEEESS
T ss_pred cchhhccCCCeeEEEEEec
Confidence 9999999999999988754
No 54
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.83 E-value=1.3e-08 Score=96.63 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=71.0
Q ss_pred CCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcE-EEEEeCCCCEEeecCCCCCC----cc
Q 007880 502 MDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIK-SCCMLGPGNFSGIWPGSRRC----EI 576 (586)
Q Consensus 502 ~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~-~i~~l~~G~~FGE~~~~~~~----~~ 576 (586)
++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++ .+..+++|++|||.+..... ++
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 57889999999999999999999999999999999999999999887777765 45899999999999876655 66
Q ss_pred ccceeeecc
Q 007880 577 CDTTFQVHV 585 (586)
Q Consensus 577 ~at~~~~~~ 585 (586)
.++..+...
T Consensus 81 ~~~~~A~~~ 89 (207)
T 2oz6_A 81 SAWVRAKVE 89 (207)
T ss_dssp CSEEEESSC
T ss_pred ceEEEECCc
Confidence 666665543
No 55
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.81 E-value=3.2e-10 Score=104.67 Aligned_cols=64 Identities=14% Similarity=0.325 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQ 430 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~ 430 (586)
..|..|+||+++|+|| |||++|.|. .+++++++.+++|++++++++|.+++.+.+...++.+..
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~-~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~~ 131 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTL-WGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQF 131 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSS-TTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999 999999995 999999999999999999999999999887665554433
No 56
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.79 E-value=3.7e-09 Score=101.73 Aligned_cols=76 Identities=8% Similarity=0.162 Sum_probs=69.3
Q ss_pred HHHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEee
Q 007880 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGI 567 (586)
Q Consensus 491 ~~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE 567 (586)
.+++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++ ...+|++. +..+++|++|||
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~ 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC
Confidence 45788999999999999999999999999999999999999999999999999995 55666644 589999999999
No 57
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.76 E-value=2.2e-08 Score=99.11 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=71.8
Q ss_pred cCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCC-ccc
Q 007880 500 QHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRC-EIC 577 (586)
Q Consensus 500 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~-~~~ 577 (586)
..++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++|||.+..... ++.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 55899999999999999999999999999999999999999999999877777754 5899999999999976665 666
Q ss_pred cceeeecc
Q 007880 578 DTTFQVHV 585 (586)
Q Consensus 578 at~~~~~~ 585 (586)
++..+...
T Consensus 135 ~~~~A~~~ 142 (260)
T 3kcc_A 135 AWVRAKTA 142 (260)
T ss_dssp SEEEESSC
T ss_pred eEEEECCC
Confidence 66666544
No 58
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=98.74 E-value=6.7e-09 Score=100.10 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=67.3
Q ss_pred HHhcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEe
Q 007880 492 LVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSG 566 (586)
Q Consensus 492 ~l~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FG 566 (586)
+++++|+|++++++.+..++..++...|.+|++|+++|+.++.+|+|.+|.|.++ ...+|++. +..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec
Confidence 3678999999999999999999999999999999999999999999999999997 56667654 58999999999
No 59
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.73 E-value=2e-08 Score=113.02 Aligned_cols=111 Identities=12% Similarity=0.152 Sum_probs=89.8
Q ss_pred hHhhhcCCchhHHHHHHHHHHHHHhcCCcccCCCHHHHHHhhcccE-EEEecCCCEEEcCCCccCeEEEEEeeeEEEEEE
Q 007880 470 CEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVK-SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI 548 (586)
Q Consensus 470 ~~il~~Lp~~Lr~~i~~~~~~~~l~~~~lF~~~~~~~l~~l~~~l~-~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~ 548 (586)
..++... +..|.+.......+.++++|+|++++++.+..++..+. ...|.+|++|+++||.++.+|||.+|.|.++..
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 4555444 44455444555678999999999999999999999998 789999999999999999999999999999762
Q ss_pred ecCCcEEEEEeCCCCEEeecCCCCCCccccceeeec
Q 007880 549 LHNNIKSCCMLGPGNFSGIWPGSRRCEICDTTFQVH 584 (586)
Q Consensus 549 ~~~~~~~i~~l~~G~~FGE~~~~~~~~~~at~~~~~ 584 (586)
|...+..+++|++|||.+.....++.++..+..
T Consensus 91 ---g~~il~~l~~Gd~fGe~al~~~~~~~~tv~A~e 123 (694)
T 3cf6_E 91 ---GKGVVCTLHEGDDFGKLALVNDAPRAASIVLRE 123 (694)
T ss_dssp ---TTEEEEEEETTCEECHHHHHHTCBCSSEEEECS
T ss_pred ---CCEEEEEeCCCCEeehHHHhCCCCceEEEEEee
Confidence 335779999999999998655556666665554
No 60
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.70 E-value=1.7e-08 Score=96.77 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCC
Q 007880 496 VPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRC 574 (586)
Q Consensus 496 ~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~ 574 (586)
-|.|+..++.-...++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++||+.+.....
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 478888889999999999999999999999999999999999999999998877777754 4899999999999865543
Q ss_pred -ccccceeeecc
Q 007880 575 -EICDTTFQVHV 585 (586)
Q Consensus 575 -~~~at~~~~~~ 585 (586)
++.++..+...
T Consensus 84 ~~~~~~~~A~~~ 95 (213)
T 1o5l_A 84 PRFPVNVVAGEN 95 (213)
T ss_dssp CBCSSEEEESSS
T ss_pred CCceEEEEEccc
Confidence 66666655543
No 61
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.67 E-value=2.9e-08 Score=99.98 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 422 (586)
..|..|+|||++|||| |||++|.+ ..+++++++.+++|++++|+++|.+.+.++..
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t-~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIG-PLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4688999999999999 99999999 49999999999999999999999988887543
No 62
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.61 E-value=4.9e-08 Score=95.82 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=73.4
Q ss_pred hcCCcccCCCHHHHHHhhcccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCC
Q 007880 494 RQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSR 572 (586)
Q Consensus 494 ~~~~lF~~~~~~~l~~l~~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~ 572 (586)
.+...+..++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++||+ . ..
T Consensus 12 ~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~-l~ 89 (250)
T 3e6c_C 12 GAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-L-YP 89 (250)
T ss_dssp CCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-C-SC
T ss_pred hhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-e-cC
Confidence 33444488999999999999999999999999999999999999999999999877777764 489999999999 4 33
Q ss_pred CCccccceeeecc
Q 007880 573 RCEICDTTFQVHV 585 (586)
Q Consensus 573 ~~~~~at~~~~~~ 585 (586)
.. +.++..+...
T Consensus 90 ~~-~~~~~~A~~~ 101 (250)
T 3e6c_C 90 TG-NNIYATAMEP 101 (250)
T ss_dssp CS-CCEEEEESSS
T ss_pred CC-CceEEEEccc
Confidence 33 5555555443
No 63
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.58 E-value=3.2e-08 Score=100.82 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 366 EKILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
..|..|+||+++|||| |||++|.| ..+++++++.+++|++++|+++|.+.+.++...+
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t-~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQT-VYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999 99999999 4999999999999999999999999998876543
No 64
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.53 E-value=2.6e-07 Score=93.77 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
.|..|+|||++|||| |||+.|.| ..+++++++.|++|++++|+++|.+.+.++...+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t-~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQT-VYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588899999999999 99999999 5999999999999999999999999998876544
No 65
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.52 E-value=1.9e-07 Score=93.80 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcC
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQ 444 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~ 444 (586)
.|..|+||+++|||| |||++|.|. .+++++++.+++|+.+++++++.+++.+..... ..+..++..+.+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~-~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~------~~i~~le~~~~~~~ 187 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTD-AGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR------HGIGHIEAIFLKWH 187 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTHHHHHHHTTTC
T ss_pred ChhhhhHhhheeeeecccCCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHhccc
Confidence 689999999999999 999999995 999999999999999999999999999876432 23333444555555
Q ss_pred CChH
Q 007880 445 LPQG 448 (586)
Q Consensus 445 lp~~ 448 (586)
.++.
T Consensus 188 ~~~~ 191 (309)
T 3um7_A 188 VPPE 191 (309)
T ss_dssp --CC
T ss_pred cchh
Confidence 5544
No 66
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.43 E-value=3.9e-07 Score=85.75 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=58.4
Q ss_pred EEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCCccccceeeeccC
Q 007880 517 LIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRCEICDTTFQVHVC 586 (586)
Q Consensus 517 ~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~~~~at~~~~~~~ 586 (586)
+.|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++||| +.+...++.++..+...|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~ 71 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEA 71 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcE
Confidence 578999999999999999999999999998876777654 589999999999 877777777777666543
No 67
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.42 E-value=4e-07 Score=88.92 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=62.7
Q ss_pred HHHHHHhhcccE---EEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCCc
Q 007880 504 DLVLENICDRVK---SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRCE 575 (586)
Q Consensus 504 ~~~l~~l~~~l~---~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~~ 575 (586)
++.+..++.... .+.|.+|++|+++|+.++.+|||.+|.|.++....+|++. +..+++|++||+.+.....+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~ 105 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNK 105 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCC
Confidence 678888888888 9999999999999999999999999999999877777754 48999999999998554443
No 68
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.42 E-value=5.3e-07 Score=87.72 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=62.4
Q ss_pred CCCHHHHHHhhc--ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEEeecCCCCCC
Q 007880 501 HMDDLVLENICD--RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFSGIWPGSRRC 574 (586)
Q Consensus 501 ~~~~~~l~~l~~--~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~FGE~~~~~~~ 574 (586)
+++++.+..++. .++...|.+|++|+++|+.++.+|||.+|.|.++....+|++.+ ..+ +|++|||.+.....
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~ 78 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTE 78 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTC
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCC
Confidence 577888888874 69999999999999999999999999999999988777777655 667 99999999866554
No 69
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.37 E-value=1.5e-06 Score=88.40 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhhhccc--ccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 366 EKILFPIFWGLMTLST--FGNLEST--TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~--t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
..+..++|||+.|+|| |||++|. + ...++++++.+++|.++.|+++|.+.+-++...+
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~-~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKC-PEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3466799999999999 9999997 4 4899999999999999999999999888876554
No 70
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.30 E-value=4.3e-07 Score=85.88 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=57.0
Q ss_pred hhcccEEEEecCCCEEEcCCCcc--CeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEEeecCCCCCCccccceeeec
Q 007880 510 ICDRVKSLIFTKGEVITKEGDPV--QRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFSGIWPGSRRCEICDTTFQVH 584 (586)
Q Consensus 510 l~~~l~~~~~~~ge~I~~~gd~~--~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~FGE~~~~~~~~~~at~~~~~ 584 (586)
|+..++...|.+|++|+++|+.+ +.+|||.+|.|.++....+|++. +..+++|++||+ +.+...++..+..+..
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~ 77 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAAT 77 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESS
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcc
Confidence 34567889999999999999999 99999999999998877777755 489999999999 7554555555555444
No 71
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.30 E-value=6.1e-06 Score=79.98 Aligned_cols=58 Identities=9% Similarity=0.143 Sum_probs=37.5
Q ss_pred hhHHHHHHHHhhhhccc--ccccccc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007880 365 LEKILFPIFWGLMTLST--FGNLEST----TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (586)
Q Consensus 365 ~~~Y~~slYwa~~TmtT--yGDi~p~----t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 422 (586)
++....|++|.+.++|+ +||+... +...-..+..++++.+.++....+|.+.+-+++.
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~ 226 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQK 226 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999998 8886221 1112233444555666677777777777766543
No 72
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.27 E-value=1.9e-06 Score=95.03 Aligned_cols=52 Identities=19% Similarity=0.534 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGN-IKVFL 419 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~-i~~il 419 (586)
.|..|+||+++|||| |||++|.|. .+++++++++++|++++++.++. +.+.+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESD-AGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999 999999994 99999999999999999999998 55544
No 73
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.19 E-value=6e-06 Score=84.01 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhhhccc--ccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 366 EKILFPIFWGLMTLST--FGNLEST--TEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 366 ~~Y~~slYwa~~TmtT--yGDi~p~--t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
..+..++||++.|+|| |||++|. + ...++++.+.+++|+++.|+++|.+.+-++...+
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~-~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEEC-PLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4578899999999999 9999874 6 5899999999999999999999999888876553
No 74
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.16 E-value=8.8e-07 Score=88.93 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEV------VFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQ 427 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~------i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~ 427 (586)
.|+.|+||+++|+|| |||++|.++ .++ +++++++++|+.+++++++.+++.+....++++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~-~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~~ 291 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGAD-PRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTR 291 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCC-TTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC-
T ss_pred CHHHHHHHHHhheeccccCCCCCCCc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999 999999996 776 599999999999999999999999877765443
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.13 E-value=3e-06 Score=83.79 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHAT 422 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~ 422 (586)
.|..|+||+++|+|| |||++|.|+ .+++++++.+++|+.+++++++.++..+...
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~-~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSD-GGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999 999999995 9999999999999999999999998766543
No 76
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.99 E-value=4e-06 Score=82.90 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=48.7
Q ss_pred HHHHHHHHhhhhccc--cccccccccch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 367 KILFPIFWGLMTLST--FGNLESTTEWL-------EVVFNIIVLTSGLLLVTMLIGNIKVFLHA 421 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT--yGDi~p~t~~~-------E~i~~i~~mi~G~~~fa~iig~i~~il~~ 421 (586)
.|+.|+||+++|+|| |||+.|.++ . .++++++.+++|+.+++++++.+++++..
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~-~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEG-YNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCS-SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCC-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999 999999985 4 49999999999999999999999887643
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.82 E-value=1.2e-06 Score=90.17 Aligned_cols=56 Identities=18% Similarity=0.475 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhccc--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 007880 368 ILFPIFWGLMTLST--FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTS 424 (586)
Q Consensus 368 Y~~slYwa~~TmtT--yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~ 424 (586)
|..|+||+++|+|| |||++|.|. .+++++++++++|+++++++++.+++.+.+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~-~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTP-LGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCS-SHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55699999999999 999999994 999999999999999999999999998876543
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.57 E-value=0.00017 Score=63.34 Aligned_cols=78 Identities=8% Similarity=0.060 Sum_probs=50.2
Q ss_pred HhhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHhhheeEEeecCccccccccc
Q 007880 86 QEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAAD 165 (586)
Q Consensus 86 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv 165 (586)
+.+|.+++++++.++...-+.. .. ..+.+....+..+|+++-++|.+|+++|+..+ +
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et----~~------~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~---------- 62 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEY----TM------QLSGEYLVRLYLVDLILVIILWADYAYRAYKS---G---------- 62 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HS------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----ch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----------
Confidence 3466666666665554432211 10 11122334567899999999999999999432 1
Q ss_pred cCCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhh
Q 007880 166 DEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQ 203 (586)
Q Consensus 166 ~~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~ 203 (586)
+ .++|+ + |=++|+++++|+..
T Consensus 63 --~------------~~~y~--~-~niiDllailp~~~ 83 (132)
T 1ors_C 63 --D------------PAGYV--K-KTLYEIPALVPAGL 83 (132)
T ss_dssp --S------------TTTTT--T-TCGGGTGGGSCHHH
T ss_pred --C------------HHHHH--H-HHHHHHHHHHHHHH
Confidence 1 14677 7 88999999999843
No 79
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.54 E-value=0.00016 Score=64.75 Aligned_cols=77 Identities=8% Similarity=0.072 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHhhhchheeeeeccCcceeeeecCcchhhhHHHHHHHHHHHHHHHHhhheeEEeecCcccccccccc
Q 007880 87 EWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADD 166 (586)
Q Consensus 87 ~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~F~~Diil~f~t~y~~~~~~~~~G~lv~ 166 (586)
.||.+++++++.+++++-+..+. . .+.+....+..+|.++-++|++|+++|+..+ +
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~-~---------i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~----------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTM-Q---------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---G----------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-C---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH-h---------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----------
Confidence 36666666665555443322111 1 1112234567899999999999999999433 1
Q ss_pred CCCCCCCCCChHHHHHHHhhcccchhhHHhhhcchhh
Q 007880 167 EDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQ 203 (586)
Q Consensus 167 ~d~~~~~~~~~k~Ia~~Yl~sk~~F~iDlls~lP~~~ 203 (586)
| .++|+ |+ -++|++|++|+..
T Consensus 78 ---------~----k~~f~--~~-~iiDllailP~~~ 98 (147)
T 2kyh_A 78 ---------D----PAGYV--KK-TLYEIPALVPAGL 98 (147)
T ss_dssp ---------C----HHHHH--HH-STTTHHHHCCHHH
T ss_pred ---------c----HHHHH--HH-HHHHHHHHHHHHH
Confidence 1 24688 44 5899999999853
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=55.30 E-value=31 Score=28.22 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=36.3
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEee
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGI 567 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE 567 (586)
.+....+.||..+-..-...+++++|++|++++.. +++ ...+++|+.+=-
T Consensus 37 ~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~i 86 (114)
T 3fjs_A 37 EVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGA--QRRLHQGDLLYL 86 (114)
T ss_dssp EEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTE--EEEECTTEEEEE
T ss_pred EEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCE--EEEECCCCEEEE
Confidence 45566788998876555556799999999999864 333 367888887643
No 81
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=53.98 E-value=37 Score=28.13 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=34.3
Q ss_pred EEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 515 ~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
....+.||..+-.. ...+++++|++|++.+.. +|+ ...+++||.+=--+
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~--~~~l~~GD~v~ip~ 91 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGE--TVTAGPGEIVYMPK 91 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECT
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECC
Confidence 34556788766433 266899999999999864 343 35899999874433
No 82
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=53.59 E-value=16 Score=32.85 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=37.2
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+....+.||...-.....++++++|++|++.+.....++. ....+++||.+=
T Consensus 42 ~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~ 94 (178)
T 1dgw_A 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEE
Confidence 35666788988765443345899999999999865444433 356888888763
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=53.18 E-value=32 Score=27.72 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=32.9
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-.......++++|++|++.+.. ++. ...+.+|+.+=
T Consensus 40 ~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~ 87 (114)
T 2ozj_A 40 ISLFSFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ--KIDLVPEDVLM 87 (114)
T ss_dssp EEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCccccEECCCCeEEEEEeCEEEEEE---CCE--EEEecCCCEEE
Confidence 3334466777664444456889999999999854 333 35889999763
No 84
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=47.64 E-value=50 Score=26.12 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=33.4
Q ss_pred cEEEEecCCCEEEcC--CCc-cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKE--GDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~--gd~-~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-.. -.. ..++++|++|++.+.. ++. ...+++|+.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH--TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE--EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 455667899877543 333 6789999999999864 332 25788888763
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=46.32 E-value=51 Score=26.37 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=33.3
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-....++++|++|.+.+.. +++. ..+++|+.+=
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ 89 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET--YRVAEGQTIV 89 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE--EEEETTCEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE--EEECCCCEEE
Confidence 4555678888764333345789999999999854 3332 5788888774
No 86
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=45.05 E-value=36 Score=30.48 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=30.7
Q ss_pred ccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCCc
Q 007880 531 PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRCE 575 (586)
Q Consensus 531 ~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~~ 575 (586)
..++++++++|...+-.. ++|+.....|++|+.|=--++..=+|
T Consensus 54 ~~dE~FyvlkG~m~i~v~-d~g~~~~v~l~eGE~f~lP~gvpH~P 97 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLW-VDGRRERADLKEGDIFLLPPHVRHSP 97 (174)
T ss_dssp SSCEEEEEEESCEEEEEE-ETTEEEEEEECTTCEEEECTTCCEEE
T ss_pred CCceEEEEEeeEEEEEEE-cCCceeeEEECCCCEEEeCCCCCcCc
Confidence 467999999999998653 33544457999999985444444333
No 87
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=44.48 E-value=27 Score=39.27 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhhccc-cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007880 367 KILFPIFWGLMTLST-FGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHA 421 (586)
Q Consensus 367 ~Y~~slYwa~~TmtT-yGDi~p~t~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~ 421 (586)
....++|+++.+++. =++..|.+ ...|++.+++++++.++.+..-+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g~~~~p~~-~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGADISPRS-LSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcCCcc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999888 55688888 5999999999999999999999999999864
No 88
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=44.44 E-value=60 Score=25.06 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=32.4
Q ss_pred cEEEEecCCCEEEcCCCc-cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~-~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-.. .+++++|++|++.+.. ++. ...+++|+.+=
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ 78 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAF 78 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 445567888876433323 3579999999999854 232 36888888763
No 89
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=44.15 E-value=41 Score=33.65 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=36.0
Q ss_pred cEEEEecCCCEEEcC-CCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 514 VKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 514 l~~~~~~~ge~I~~~-gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+....+.||...-.. ...++++++|++|++.+.....+|......+++||.+
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~ 106 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLW 106 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEE
Confidence 445567788865332 3336899999999999876544554445788888875
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=44.10 E-value=53 Score=26.87 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=34.6
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+....+.||..+-..-....++++|++|++.+.. ++. ...+++|+.+=
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 90 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEE--TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTE--EEEECTTEEEE
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCE--EEEeCCCCEEE
Confidence 45566778888775444445789999999999864 333 25788888763
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=43.44 E-value=50 Score=30.69 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=36.1
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
.+....+.||+.+=..-...+.+++|++|++++.. ++.+ ..+++|+++
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~--~~l~~Gd~~ 85 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK--KTISNGDFL 85 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE--EEEETTEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE--EEECCCCEE
Confidence 45566688999997777778999999999999865 2332 467777765
No 92
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=42.93 E-value=57 Score=26.16 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=32.6
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-....++++|++|++.+.. ++. ...+.+|+.+=
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 83 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV--IKVLTAGDSFF 83 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE--EEEeCCCCEEE
Confidence 4555677887653322336789999999999864 333 35788998763
No 93
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=42.33 E-value=41 Score=34.04 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=37.1
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
.+....+.||..+-..-....++++|++|++.+.....+|+.....+++||++
T Consensus 80 ~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~ 132 (385)
T 1j58_A 80 ASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW 132 (385)
T ss_dssp EEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred EEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence 34556678888664332336899999999999876444566444588899876
No 94
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=41.58 E-value=64 Score=25.82 Aligned_cols=48 Identities=6% Similarity=0.062 Sum_probs=33.2
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEee
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGI 567 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE 567 (586)
.-...+.||..-.. ....++++|++|++.+.. +++. ...+++||.+=-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~--~~~l~~GD~i~i 80 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGK--KYVIEKGDLVTF 80 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCC--EEEEETTCEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCC--EEEECCCCEEEE
Confidence 44556777776544 346899999999999864 2243 358999998743
No 95
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.35 E-value=50 Score=27.02 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=33.7
Q ss_pred ccEEEEecCCCEEEcCCCcc-CeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~-~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+....+.||..+-..-... .++++|++|++.+.. .++.. ..+++|+.+=
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~~ 90 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV--THLKAGDIAI 90 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE--EEEETTEEEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE--EEeCCCCEEE
Confidence 45556788888875443443 789999999999742 23432 5788888763
No 96
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=40.07 E-value=62 Score=34.20 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=43.4
Q ss_pred HHHhhcccEEEEecCCCEEEcC-CCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEE
Q 007880 507 LENICDRVKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (586)
Q Consensus 507 l~~l~~~l~~~~~~~ge~I~~~-gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~F 565 (586)
+..+-..+....+.||-.+-.- ...++++++|++|++.+.....+|.+.. ..+++||+|
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 5566667788888999876432 2335899999999999876555556554 579999987
No 97
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=39.78 E-value=66 Score=29.23 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=36.0
Q ss_pred ccEEEEecCCCEEEcC-CCccCeEEEEEeeeEEEEEEecC---CcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHN---NIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~-gd~~~~~yfI~~G~v~v~~~~~~---~~~~i~~l~~G~~FG 566 (586)
.+....+.||...-.. ....+++++|++|++.+.....+ ++.....+++|+.|=
T Consensus 73 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 73 SMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 3556678888865322 23357999999999998653222 332247899999874
No 98
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=39.54 E-value=9.4 Score=30.68 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=33.8
Q ss_pred ccEEEEecCCCEEEcCC-CccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 513 RVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~g-d~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+++...+.||..+-..- ......|+|.+|++.+.. .++......+.+|+.+
T Consensus 18 rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 18 RVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCE
T ss_pred EEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEE
Confidence 35667789998884443 334578889999999843 5555444567888764
No 99
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=39.49 E-value=60 Score=32.75 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=37.9
Q ss_pred ccEEEEecCCCEEEcCCCcc-CeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~-~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+....+.||...-..-... +++++|++|++.+.....+|......+++||.|=
T Consensus 258 ~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ 312 (385)
T 1j58_A 258 ASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGY 312 (385)
T ss_dssp EEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEE
T ss_pred EEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEE
Confidence 35556678888764333334 8999999999998754445543456899999874
No 100
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=39.13 E-value=63 Score=32.23 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=37.7
Q ss_pred ccEEEEecCCCEEEcCCCc-cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~-~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+....+.||..+-..-.. .+++++|++|++.+.....+|+.....+++||.|=
T Consensus 235 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 235 TGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred eEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 3556678888876433233 38999999999998654445553447899999874
No 101
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=39.03 E-value=32 Score=28.86 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=32.7
Q ss_pred EEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 517 LIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 517 ~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
....||..-....+ .+++++|++|++.+.. ++|.. ..+++||.+---+
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~--~~l~~GD~~~ip~ 101 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV--HAVKAGDAFIMPE 101 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE--EEEETTCEEEECT
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE--EEECCCCEEEECC
Confidence 34556766554332 3899999999999853 34543 5899999886444
No 102
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=38.48 E-value=37 Score=30.41 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=30.5
Q ss_pred CccCeEEEEEeeeEEEEEEecCC----cEEEEEeCCCCEEeecCCCCCCc
Q 007880 530 DPVQRMLFVVRGHLQSSQILHNN----IKSCCMLGPGNFSGIWPGSRRCE 575 (586)
Q Consensus 530 d~~~~~yfI~~G~v~v~~~~~~~----~~~i~~l~~G~~FGE~~~~~~~~ 575 (586)
+..++++++++|...+-... +| +.....+++|+.|=--++..-+|
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfllP~gvpHsP 100 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLLPGNVPHSP 100 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEECTTCCEEE
T ss_pred CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEcCCCCCcCC
Confidence 34579999999999986543 34 23347999999995444443333
No 103
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=38.44 E-value=62 Score=34.33 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHhhcccEEEEecCCCEEEcCC-CccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEE
Q 007880 507 LENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (586)
Q Consensus 507 l~~l~~~l~~~~~~~ge~I~~~g-d~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~F 565 (586)
+..+-..+....+.||-.+-.-= ..++++++|++|++.+.....+|.+.. ..+++||+|
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 55666677888899998764322 235899999999999876556655544 578999876
No 104
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=38.20 E-value=35 Score=26.73 Aligned_cols=53 Identities=13% Similarity=0.000 Sum_probs=33.5
Q ss_pred cEEEEecCCCEEEcCCCcc-CeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 514 VKSLIFTKGEVITKEGDPV-QRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~-~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
+....+.||...-..-... +++++|++|++.+.. +++. ....+.+|+.+=.-+
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~-~~~~l~~Gd~~~~p~ 73 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS-VTSQLTRGVSYTRPE 73 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE-EEEEECTTCCEEECT
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC-EEEEEcCCCEEEeCC
Confidence 4455678887652222223 359999999999854 3331 346899999875443
No 105
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=37.23 E-value=52 Score=29.51 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=34.8
Q ss_pred cEEEEecCCCEEEc---CCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 514 VKSLIFTKGEVITK---EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 514 l~~~~~~~ge~I~~---~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
+....+.||...-. ....+.++++|++|++.+.. .+++......|++||.+=--+
T Consensus 119 ~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~-~~~~~~~~~~l~~GD~~~~~~ 176 (198)
T 2bnm_A 119 PLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW-GDKENPKEALLPTGASMFVEE 176 (198)
T ss_dssp EEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE-SCTTSCEEEEECTTCEEEECT
T ss_pred EEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE-CCcCCcccEEECCCCEEEeCC
Confidence 33445678876542 23345799999999999865 111122346899999874433
No 106
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=35.47 E-value=40 Score=34.80 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=39.6
Q ss_pred cccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 512 ~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
..+....+.||..+-..-...+++++|++|++.+..... +......+++||++
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNN-DDRDSYNLHPGDAQ 101 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECS-SCEEEEEECTTEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEEC-CCCeEEEecCCCEE
Confidence 457778889998776555556899999999999865434 33445788888876
No 107
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=35.21 E-value=98 Score=32.88 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHhhcccEEEEecCCCEEEcC-CCccCeEEEEEeeeEEEEEEecCCcEE-EEEeCCCCEE
Q 007880 506 VLENICDRVKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKS-CCMLGPGNFS 565 (586)
Q Consensus 506 ~l~~l~~~l~~~~~~~ge~I~~~-gd~~~~~yfI~~G~v~v~~~~~~~~~~-i~~l~~G~~F 565 (586)
.+..+-..+....+.||-++-.- .-.++++.+|++|++.+.....+|.+. ...|.+||+|
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 46666667788889999887432 233689999999999997766666654 4789999986
No 108
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=35.13 E-value=33 Score=28.60 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=32.2
Q ss_pred EecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 518 IFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 518 ~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
...||..-+... ..+++++|++|++.+.. ++|. ...+++||.|---+
T Consensus 48 e~tPG~~~~~~~-~~~E~~~iLeG~~~lt~--ddG~--~~~l~aGD~~~~P~ 94 (116)
T 3es4_A 48 MAEPGIYNYAGR-DLEETFVVVEGEALYSQ--ADAD--PVKIGPGSIVSIAK 94 (116)
T ss_dssp EECSEEEEECCC-SEEEEEEEEECCEEEEE--TTCC--CEEECTTEEEEECT
T ss_pred ecCCceeECeeC-CCcEEEEEEEeEEEEEe--CCCe--EEEECCCCEEEECC
Confidence 355666555543 23589999999999854 4554 36899999885443
No 109
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=34.23 E-value=40 Score=35.17 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=39.9
Q ss_pred cccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 512 ~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
..+....+.||..+-..-..++++++|++|++.+.....++ .....+++||++=
T Consensus 86 ~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~-~~~~~l~~GDv~~ 139 (445)
T 2cav_A 86 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDG-RDTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTE-EEEEEEETTEEEE
T ss_pred EEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCC-CEEEEecCCCEEE
Confidence 45667788999887655455689999999999986544433 3567889998864
No 110
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=34.01 E-value=55 Score=27.70 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=31.6
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 516 SLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 516 ~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
...+.||..-.. ...+++++|++|++.+.. +|.. ..+++||.+---+
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~---~g~~--~~l~~GD~i~~p~ 107 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH---EGET--MIAKAGDVMFIPK 107 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE---TTEE--EEEETTCEEEECT
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE---CCEE--EEECCCcEEEECC
Confidence 445677733222 236899999999999864 3433 4899999875444
No 111
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=33.64 E-value=85 Score=27.55 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=32.9
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-....++++|++|++.+.. +++ ...+++|+.+=
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR--VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 4455667877654333346889999999999864 333 36788888763
No 112
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=32.84 E-value=74 Score=33.45 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=41.2
Q ss_pred HHhhcccEEEEecCCCEEEcCC-CccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEE
Q 007880 508 ENICDRVKSLIFTKGEVITKEG-DPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (586)
Q Consensus 508 ~~l~~~l~~~~~~~ge~I~~~g-d~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~F 565 (586)
..+-..+....+.||-.+-.-- ..++++++|++|++.+.....+|.+.. ..+++||+|
T Consensus 334 ~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 334 SWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp TTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 3444567778889998764332 235899999999999876555665544 578999876
No 113
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=32.39 E-value=48 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=29.2
Q ss_pred EEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 515 ~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
....+.||...-..-....++++|++|++.+.. ++.. ...+.+|+.+=
T Consensus 30 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~-~~~l~~Gd~i~ 77 (117)
T 2b8m_A 30 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE-PHNYKEGNIVY 77 (117)
T ss_dssp EEEEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC-CEEEETTCEEE
T ss_pred EEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCEE-EEEeCCCCEEE
Confidence 344566776542222235689999999999864 2222 12678888663
No 114
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=31.97 E-value=1e+02 Score=32.20 Aligned_cols=60 Identities=7% Similarity=0.120 Sum_probs=45.1
Q ss_pred HHHHhhcccEEEEecCCCEEEcC-CCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEE
Q 007880 506 VLENICDRVKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (586)
Q Consensus 506 ~l~~l~~~l~~~~~~~ge~I~~~-gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~F 565 (586)
.+..+-..+....+.||-+.--- .-.++++++|++|++.+.....+|.+.+ ..+.+||+|
T Consensus 316 ~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 316 ILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 46666667778888998876432 2336899999999999977666666655 579999987
No 115
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=31.38 E-value=67 Score=28.96 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=33.9
Q ss_pred cEEEEecCCCEEE-------cCCC--ccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 514 VKSLIFTKGEVIT-------KEGD--PVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 514 l~~~~~~~ge~I~-------~~gd--~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+....+.||...- .... ...++++|++|++.+....+.|......+++||.+
T Consensus 69 ~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v 129 (190)
T 1x82_A 69 FATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVV 129 (190)
T ss_dssp EEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEE
T ss_pred EEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEE
Confidence 3344677886621 1111 12699999999999876444455445689999976
No 116
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=30.81 E-value=54 Score=34.05 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=39.8
Q ss_pred cccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 512 ~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
..+....+.||..+-..-..++++++|++|++.+..... +......+++||++
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNP-DSRDSYILEQGHAQ 113 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECS-SCEEEEEEETTEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeC-CCCEEEEeCCCCEE
Confidence 557788899999886665556899999999999865433 33445678888876
No 117
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=29.81 E-value=1.3e+02 Score=26.68 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=31.9
Q ss_pred EEEEecCCCEEEc--CCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 515 KSLIFTKGEVITK--EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 515 ~~~~~~~ge~I~~--~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
....+.||...-. -.....++++|++|++.+.. ++. ...|.+||.+=
T Consensus 107 ~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~ 155 (192)
T 1y9q_A 107 FEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIR 155 (192)
T ss_dssp EEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCE--EEEeCCCCEEE
Confidence 3455678877642 22334789999999999864 333 35899999763
No 118
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=29.61 E-value=99 Score=28.60 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=36.1
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+....+.||..+-..-...++++++++|++++.. ++. ...+.+|+.+=
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~--~~~l~~Gd~i~ 202 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGK--PFIVKKGESAV 202 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTE--EEEEETTEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCE--EEEECCCCEEE
Confidence 45667789999886544556789999999999864 333 36888998763
No 119
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=29.17 E-value=80 Score=26.96 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=31.9
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-....++++|++|++.+.. ++.. ...+.+|+.+=
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~-~~~l~~Gd~i~ 98 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP-ARILKKGDVVE 98 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC-CEEEETTCEEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE-EEEECCCCEEE
Confidence 4455677887763322334789999999999854 2321 14678888764
No 120
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=29.10 E-value=53 Score=29.37 Aligned_cols=49 Identities=8% Similarity=0.084 Sum_probs=33.3
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
.+....+.||...-.--....+..+|++|++++.. ++++ ...|++||.+
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge--~~~L~~GDsi 128 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGA--KRTVRQGGII 128 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGC--EEEECTTCEE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCe--EEEECCCCEE
Confidence 35556688887543323334578899999999853 3233 2689999998
No 121
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=29.08 E-value=73 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=33.5
Q ss_pred cEEEEecCCCEEE--cCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 514 VKSLIFTKGEVIT--KEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 514 l~~~~~~~ge~I~--~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
+....+.||.... ......+++++|++|++.+.. +++ ...+++|+.+=--+
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~ip~ 97 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG--EHPMVPGDCAAFPA 97 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECT
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE--EEEeCCCCEEEECC
Confidence 4556677888552 222223699999999999864 333 36888988764333
No 122
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=29.04 E-value=71 Score=29.71 Aligned_cols=45 Identities=20% Similarity=0.097 Sum_probs=28.3
Q ss_pred EecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 518 IFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 518 ~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+.||...=.--...+++|+|++|.+++.. +++. ...+++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v--~~g~--~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHL--RNAP--DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEE--TTSC--CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEE--CCCC--EEecCCCCEEE
Confidence 344444432222346799999999999754 3232 36888998763
No 123
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=28.80 E-value=74 Score=28.06 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=31.8
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-....++++|++|++++.. +++ ...+++|+.+=
T Consensus 55 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~--~~~l~~GD~i~ 102 (166)
T 3jzv_A 55 LRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA--VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 4444567776653333345789999999999854 333 35788888763
No 124
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.68 E-value=97 Score=29.11 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=37.8
Q ss_pred hcccEEEEecCCCEEEc-CCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEee
Q 007880 511 CDRVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGI 567 (586)
Q Consensus 511 ~~~l~~~~~~~ge~I~~-~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE 567 (586)
...+....+.||..+=. +-....+.++|++|+..+.. +++. ..+++||++--
T Consensus 164 ~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~--~~l~~GD~~~~ 216 (246)
T 1sfn_A 164 DFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY--YPVTAGDIIWM 216 (246)
T ss_dssp SEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE--EEEETTCEEEE
T ss_pred CeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE--EEcCCCCEEEE
Confidence 44567778899988753 44456789999999999754 4433 58999998643
No 125
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=28.41 E-value=54 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=25.4
Q ss_pred CccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecC
Q 007880 530 DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWP 569 (586)
Q Consensus 530 d~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~ 569 (586)
...+++++|++|++.+.. +++. ....|++||.+=--+
T Consensus 51 ~~~~E~~~Vl~G~~~l~~--~~~~-~~~~l~~Gd~i~ipa 87 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC--EGDT-APRVMRPGDWLHVPA 87 (112)
T ss_dssp CSSEEEEEEEESCEEEEE--TTCS-SCEEECTTEEEEECT
T ss_pred CCccEEEEEEeCeEEEEE--CCEE-EEEEECCCCEEEECC
Confidence 345789999999999864 2222 114789999875444
No 126
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=28.23 E-value=1.1e+02 Score=24.95 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=31.3
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||...-..-....++++|++|++.+.. +++ ...+++|+.+=
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~--~~~l~~Gd~~~ 83 (128)
T 4i4a_A 36 GAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDE--DFPVTKGDLII 83 (128)
T ss_dssp EEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTE--EEEEETTCEEE
T ss_pred EEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCE--EEEECCCcEEE
Confidence 4445566776443333345789999999999865 333 25778888763
No 127
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=28.12 E-value=78 Score=27.56 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=30.7
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+....+.||..+-..-....++++|++|++++.. +++ ...+.+|+.+
T Consensus 46 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~--~~~l~~Gd~i 92 (156)
T 3kgz_A 46 WRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GET--ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEE
Confidence 3444556776553333345689999999999864 333 3578888876
No 128
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=28.08 E-value=76 Score=27.40 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=32.3
Q ss_pred cEEEEecCCCE-E-EcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 514 VKSLIFTKGEV-I-TKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 514 l~~~~~~~ge~-I-~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
+....+.||.. . .......+++++|++|++.+.. +++ ...+++|+.+
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END--QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE--EEEeCCCCEE
Confidence 45566788874 2 1222245899999999999864 333 3689999987
No 129
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=28.06 E-value=60 Score=28.87 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=24.7
Q ss_pred CccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEee
Q 007880 530 DPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGI 567 (586)
Q Consensus 530 d~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE 567 (586)
..+.+++||++|++++.. ++. ...|++|++|=-
T Consensus 108 h~gEE~~yVLeG~v~vtl---~g~--~~~L~~Gds~~i 140 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV---CKN--KFLSVKGSTFQI 140 (166)
T ss_dssp CSEEEEEEEEESEEEEEE---TTE--EEEEETTCEEEE
T ss_pred CCceEEEEEEEeEEEEEE---CCE--EEEEcCCCEEEE
Confidence 345789999999999865 333 258999998743
No 130
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.69 E-value=1e+02 Score=25.70 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=31.8
Q ss_pred cEEEEecCCCEEEcCCCc-cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDP-VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~-~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-.. ..++++|++|++.+.. ++. ...+.+|+.+=
T Consensus 59 ~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ 107 (133)
T 1o4t_A 59 FARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVCF 107 (133)
T ss_dssp EEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEE
T ss_pred EEEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE--EEEeCCCcEEE
Confidence 345567888766322222 3689999999999854 333 35788888763
No 131
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=26.66 E-value=74 Score=30.76 Aligned_cols=50 Identities=4% Similarity=0.022 Sum_probs=33.9
Q ss_pred EEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeecCCCCCCc
Q 007880 524 VITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIWPGSRRCE 575 (586)
Q Consensus 524 ~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~~~~~~~~ 575 (586)
..+. -+..+++|++++|...+-.. ++|+..-..+++|++|=-=++..-+|
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~-d~g~~~~V~i~eGemfllP~gv~HsP 93 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVL-EQGKHRDVVIRQGEIFLLPARVPHSP 93 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEE-ETTEEEEEEECTTEEEEECTTCCEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEE-eCCceeeEEECCCeEEEeCCCCCcCC
Confidence 3444 45578999999999998653 34544457999999985444444344
No 132
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=24.55 E-value=1.7e+02 Score=30.80 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=44.6
Q ss_pred HHHHhhcccEEEEecCCCEEEc-CCCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEE
Q 007880 506 VLENICDRVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (586)
Q Consensus 506 ~l~~l~~~l~~~~~~~ge~I~~-~gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~F 565 (586)
.+..+-..+....+.||-+.-- -.-.++++.+|++|++.|.....+|...+ ..|.+||+|
T Consensus 352 ~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 352 VLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp THHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEE
Confidence 4566656677788888887632 22346899999999999977666666665 589999986
No 133
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=24.47 E-value=89 Score=27.22 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=23.3
Q ss_pred cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 532 VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 532 ~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+++++|++|++++.. +|. ...+++||.+=
T Consensus 84 ~eE~~yVLeG~~~l~i---~g~--~~~l~~GD~i~ 113 (151)
T 4axo_A 84 YDEIDYVIDGTLDIII---DGR--KVSASSGELIF 113 (151)
T ss_dssp SEEEEEEEEEEEEEEE---TTE--EEEEETTCEEE
T ss_pred CcEEEEEEEeEEEEEE---CCE--EEEEcCCCEEE
Confidence 5789999999999864 443 36899999773
No 134
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=24.28 E-value=89 Score=26.99 Aligned_cols=53 Identities=8% Similarity=-0.066 Sum_probs=32.1
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecC----CcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN----NIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~----~~~~i~~l~~G~~FG 566 (586)
+....+.||..+-..-....++++|++|++.+.....+ +......+++|+.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 44555778775422222346799999999998652110 111346888888763
No 135
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=23.44 E-value=1.4e+02 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=33.7
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeec
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIW 568 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~ 568 (586)
+....+.||...-..- ++++++|++|++++.. +++. ..|++||++=--
T Consensus 52 ~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~~--~~l~~Gd~~~~p 99 (246)
T 1sfn_A 52 QFTAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGET--RTLREYDYVYLP 99 (246)
T ss_dssp EEEEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSCE--EEECTTEEEEEC
T ss_pred EEEEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCEE--EEECCCCEEEEC
Confidence 3455678887765443 7789999999999854 3332 588999876433
No 136
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=23.35 E-value=90 Score=31.88 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=36.4
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEeec
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGIW 568 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FGE~ 568 (586)
+....+.||+..-..-...+++|+|++|+..+.. +|+ ...+++||+|=.-
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~ge--~~~~~~GD~~~iP 345 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GGK--RFDWSEHDIFCVP 345 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TTE--EEEECTTCEEEEC
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CCE--EEEEeCCCEEEEC
Confidence 4677789999876555556789999999997643 443 3688999987543
No 137
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=22.74 E-value=77 Score=32.41 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=34.7
Q ss_pred EEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 515 KSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 515 ~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
....+.||+.+-..-....++|||++|+-.... .+|++ ..+++||+|=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~--v~G~~--~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI--VDGHK--VELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE--ETTEE--EEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE--ECCEE--EEEcCCCEEE
Confidence 777899999986554455689999999986522 34543 5788888773
No 138
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=22.48 E-value=97 Score=25.42 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=30.1
Q ss_pred cEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||...-.--....++++|++|++.+.. ++.. ..+.+|+.+=
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ 97 (126)
T 1vj2_A 50 MRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE--ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE--EEEETTEEEE
T ss_pred EEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE--EEECCCCEEE
Confidence 3344556666553222336789999999999753 2332 5778887763
No 139
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=22.41 E-value=97 Score=26.63 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=26.5
Q ss_pred cCCCccCeEEEEEeeeEEEEEEec-CCc--EEEEEeCCCCEEe
Q 007880 527 KEGDPVQRMLFVVRGHLQSSQILH-NNI--KSCCMLGPGNFSG 566 (586)
Q Consensus 527 ~~gd~~~~~yfI~~G~v~v~~~~~-~~~--~~i~~l~~G~~FG 566 (586)
...+..|++|+|++|++.+..... ++. .....+++|+++=
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv 87 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN 87 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE
Confidence 334556999999999999864321 111 1236889998773
No 140
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=22.28 E-value=1.5e+02 Score=28.36 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=37.1
Q ss_pred cccEEEEecCCCEEEc-CCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 512 DRVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 512 ~~l~~~~~~~ge~I~~-~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
..+....+.||..|-. +-....+.++|++|+..+.. +++ ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~--~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQD--WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTE--EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 5577788999999964 44444678999999999753 443 36889999763
No 141
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=22.19 E-value=2.3e+02 Score=29.55 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHhhcccEEEEecCCCEEEc-CCCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEE
Q 007880 506 VLENICDRVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (586)
Q Consensus 506 ~l~~l~~~l~~~~~~~ge~I~~-~gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~F 565 (586)
.++.+-..+....+.||-..-- -.-.++++.+|++|++.+.....+|.+.+ ..|.+||+|
T Consensus 317 ~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVf 378 (465)
T 3qac_A 317 ILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLV 378 (465)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred CccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEE
Confidence 4566656677777888877632 22336899999999999977666666655 579999987
No 142
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=22.14 E-value=1.2e+02 Score=24.60 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=28.9
Q ss_pred cEEEEecCCCEEE--cCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 514 VKSLIFTKGEVIT--KEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 514 l~~~~~~~ge~I~--~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
+....+.||..+- ..-+....+|+|++|++.+.. +++ ...+++|+.+=
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~ 77 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGE--KIELQAGDWLR 77 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTE--EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 4445667877552 222223457779999999854 333 25677777653
No 143
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=21.74 E-value=1.1e+02 Score=30.44 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=25.5
Q ss_pred cCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 532 VQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 532 ~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
.+++++|++|++++.....+|......|++||++
T Consensus 71 ~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v 104 (350)
T 1juh_A 71 HYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYG 104 (350)
T ss_dssp CEEEEEEEESEEEEEEEETTSCCEEEEEETTCEE
T ss_pred ceEEEEEEEEEEEEEECCcCCceEEEEECCCCEE
Confidence 5789999999999876442444345788999875
No 144
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=21.28 E-value=1.6e+02 Score=28.05 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=34.3
Q ss_pred ccEEEEecCCCEEEc-CCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEEe
Q 007880 513 RVKSLIFTKGEVITK-EGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSG 566 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~-~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~FG 566 (586)
.+....+.||..+-. .-....++++|++|++.+.. +++ ...+++||.+=
T Consensus 183 ~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~~--~~~l~~GD~i~ 232 (274)
T 1sef_A 183 NMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE--WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE--EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 355566889887643 33346789999999999864 333 36889998763
No 145
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=21.08 E-value=1.9e+02 Score=30.14 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=44.2
Q ss_pred HHHHhhcccEEEEecCCCEEEcC-CCccCeEEEEEeeeEEEEEEecCCcEEE-EEeCCCCEE
Q 007880 506 VLENICDRVKSLIFTKGEVITKE-GDPVQRMLFVVRGHLQSSQILHNNIKSC-CMLGPGNFS 565 (586)
Q Consensus 506 ~l~~l~~~l~~~~~~~ge~I~~~-gd~~~~~yfI~~G~v~v~~~~~~~~~~i-~~l~~G~~F 565 (586)
.+..+-..+....+.||-+.--- .-.++++-+|++|++.|.....+|++.. ..|.+||+|
T Consensus 317 ~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 317 ILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp THHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence 45666677778888888776322 2346899999999999977666666544 689999986
No 146
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=20.89 E-value=95 Score=31.75 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=40.4
Q ss_pred cccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCE
Q 007880 512 DRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNF 564 (586)
Q Consensus 512 ~~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~ 564 (586)
..+....+.||......-..++++++|++|+..+.....++. ....+++||+
T Consensus 52 ~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~-~~~~l~~GDv 103 (397)
T 2phl_A 52 YRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDR-REYFFLTSDN 103 (397)
T ss_dssp CEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTE-EEEEEEESSC
T ss_pred EEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCc-EEEEECCCCc
Confidence 457778889998876555567899999999999876555544 4678999998
No 147
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=20.75 E-value=1.5e+02 Score=27.72 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=33.6
Q ss_pred ccEEEEecCCCEEEcCCCccCeEEEEEeeeEEEEEEecCCcEEEEEeCCCCEE
Q 007880 513 RVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFS 565 (586)
Q Consensus 513 ~l~~~~~~~ge~I~~~gd~~~~~yfI~~G~v~v~~~~~~~~~~i~~l~~G~~F 565 (586)
.+....+.||..+-..-....++++|++|++++.. ++. ...+.+|+.+
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i 82 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GDV--TRKMTALESA 82 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TTE--EEEEETTTCE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CCE--EEEECCCCEE
Confidence 34555688988775444446789999999999864 333 2578888833
Done!