BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007881
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV2|M Chain M, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|N Chain N, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|O Chain O, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|P Chain P, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|Q Chain Q, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|R Chain R, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|S Chain S, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|T Chain T, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|U Chain U, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|V Chain V, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|W Chain W, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|X Chain X, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis
Length = 181
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
+L+ G+++ GF+ G+ V V N L YG+ + +V + +I+ + +W S
Sbjct: 100 ILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKA 159
Query: 186 VYVQNYEEENGCQ 198
+ N ++N Q
Sbjct: 160 ELLLNSSDKNTEQ 172
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 10 DFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFD 69
D F C +S+++ + G++L L +G I + V C F Y TG D + K++D
Sbjct: 45 DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC--FTKYCVTGSADYSIKLWD 102
Query: 70 EMPERNLATWNA 81
+ +ATW +
Sbjct: 103 VSNGQCVATWKS 114
>pdb|2IVW|A Chain A, The Solution Structure Of A Domain From The Neisseria
Meningitidis Pilp Pilot Protein
Length = 113
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
+L+ G+++ GF+ G+ V V N L YG+ + +V + +I+ + +W S
Sbjct: 32 ILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKA 91
Query: 186 VYVQNYEEENGCQ 198
+ N ++N Q
Sbjct: 92 ELLLNSSDKNTEQ 104
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIA----ADNLFKLDP 414
DLL GL D +++ ++P ++ A LNA + G+ +LG IA AD + D
Sbjct: 298 DLLQGGGLDDVVRRLVR-YGLKPEWALRAATLNAAQRLGRSDLGLIAAGRRADIVVFEDL 356
Query: 415 ND-SGNHVLLSNMFAATG 431
N S HVL S A G
Sbjct: 357 NGFSARHVLASGRAVAEG 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,964,551
Number of Sequences: 62578
Number of extensions: 754988
Number of successful extensions: 1521
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1515
Number of HSP's gapped (non-prelim): 8
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)