BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007881
(586 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/586 (69%), Positives = 482/586 (82%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRRE + PNDFTFPC FKA ++L +PVTGKQ+HALA+K G+I DVFVGCSAFDMY KT L
Sbjct: 99 MRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRL 158
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DDA K+FDE+PERNL TWNA+ISN+V GRP+ AI+AFI RR G P+ ITFCAFLNA
Sbjct: 159 RDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNA 218
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CSD L LG QLHG ++RSGFD +VSVCNGL+DFYGKC ++ ++++F + KN VSW
Sbjct: 219 CSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSW 278
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
CS++ YVQN+E+E ++L +R++ VE DFMISSVLSACA +AGLELGRS+HA AVK
Sbjct: 279 CSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK 338
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
ACVE IFVGSALVDMYGKCG I+D+E AF++MPE+NLV N++IGGYAHQG DMAL+
Sbjct: 339 ACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALAL 398
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM C PNY+T V +LSACSRAGAVE GMKIF SM YGI+PGAEHY+C+VD+
Sbjct: 399 FEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDM 458
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG+V+RAYE IK+MP++PTISVWGAL NACR++GKP+LG +AA+NLFKLDP DSGNH
Sbjct: 459 LGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNH 518
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSN FAA GRW EA+ VR+E+K VGIKKGAG SWI+VKN++H FQAKD SH N EIQ
Sbjct: 519 VLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQ 578
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
L KLR EM+AAGY PD +LYD+EEEEK EV HHSEK+ALAFGL+++P VPIRIT
Sbjct: 579 TTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRIT 638
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCHS FKF+SG V RE+IVRDNNRFHRF DG CSC DYW
Sbjct: 639 KNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 166/358 (46%), Gaps = 6/358 (1%)
Query: 29 GKQLHALALKS-GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAV 87
G+ +HA +K+ F+ +MYSK + A + P RN+ +W + IS
Sbjct: 25 GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLA 84
Query: 88 LGGRPKNAIDAFINLRRTGGEPDLITF-CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNV 146
G A+ F +RR G P+ TF CAF A + L G+Q+H V+ G +V
Sbjct: 85 QNGHFSTALVEFFEMRREGVVPNDFTFPCAF-KAVASLRLPVTGKQIHALAVKCGRILDV 143
Query: 147 SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206
V D Y K A+ +FD I ++N +W + + V + + F+ RR
Sbjct: 144 FVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRI 203
Query: 207 GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266
P + L+AC+ L LG +H + +++ + ++ V + L+D YGKC I+ +
Sbjct: 204 DGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSS 263
Query: 267 EIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326
EI F +M +N V W +++ Y Q H D S + +++ + VLSAC+
Sbjct: 264 EIIFTEMGTKNAVSWCSLVAAYV-QNHEDEKASVLYLRSRKDIVETSDFM-ISSVLSACA 321
Query: 327 RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTIS 384
+E G I ++ +K ++ + +VD+ G+ G ++ + + EMP + ++
Sbjct: 322 GMAGLELGRSI-HAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVT 378
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/652 (38%), Positives = 363/652 (55%), Gaps = 78/652 (11%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
P+ P LFK + L GKQ+H ++ SG D FV S F MY + G DA K+
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKV 173
Query: 68 FDEMPER-----------------------------------NLATWNAYISNAVLGGRP 92
FD M ++ N+ +WN +S G
Sbjct: 174 FDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYH 233
Query: 93 KNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGL 152
K A+ F + G PD +T + L + D +L +GR +HG++++ G + V + +
Sbjct: 234 KEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAM 293
Query: 153 VDFYGKCNEV-----------------------GLAKVVFDGIIDK-------------- 175
+D YGK V GL++ +G++DK
Sbjct: 294 IDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSR---NGLVDKALEMFELFKEQTME 350
Query: 176 -NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSV 234
N VSW S++ QN ++ ++F + GV+P I S+L AC IA L GRS
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRST 410
Query: 235 HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHA 294
H AV+ + N+ VGSAL+DMY KCG I ++I FN MP +NLVCWN+++ G++ G A
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKA 470
Query: 295 DMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY 354
+S FE + MR P++++ +LSAC + G ++G K F M+ +YGIKP EHY
Sbjct: 471 KEVMSIFESL--MRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHY 528
Query: 355 ACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDP 414
+C+V+LLGRAG + AY++IKEMP P VWGALLN+CR+ +L IAA+ LF L+P
Sbjct: 529 SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEP 588
Query: 415 NDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHE 474
+ G +VLLSN++AA G W E D +R +M+ +G+KK GCSWI VKNR++ A D SH
Sbjct: 589 ENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHP 648
Query: 475 RNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPG 534
+ +I + ++ +EM+ +G+ P+ +FAL+DVEE+E+ + HSEK+A+ FGL+ P G
Sbjct: 649 QIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG 708
Query: 535 VPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
P+++ KNLRICGDCH+ KFIS GRE+ +RD NRFH F DG CSC D+W
Sbjct: 709 TPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/441 (23%), Positives = 172/441 (39%), Gaps = 76/441 (17%)
Query: 31 QLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90
Q HA LKSG +D ++ YS +DAD + +P+ + ++++ I
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150
+I F + G PD C++ S ++G+Q+H SG D + V
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 151 GLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML------------VVYVQNYEEENGCQ 198
+ Y +C +G A+ VFD + DK DV CS L VV + + E +G +
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDK-DVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 199 ------------------------MFLTARREGVEPKDFMISSVLSACARIAGLELGRSV 234
MF G P +SSVL + L +GR +
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 235 HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-------------------- 274
H +K + + V SA++DMYGK G + FN+
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 275 ---------------ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLV 319
E N+V W +II G A G AL F EM + PN+VT+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK--PNHVTIP 392
Query: 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPM 379
+L AC A+ G + + ++ + + ++D+ + G ++ + + MP
Sbjct: 393 SMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPT 451
Query: 380 RPTISVWGALLNACRVYGKPE 400
+ + W +L+N ++GK +
Sbjct: 452 K-NLVCWNSLMNGFSMHGKAK 471
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 149/371 (40%), Gaps = 78/371 (21%)
Query: 132 QLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY 191
Q H +++SG + + L+ Y N A +V I D S+ S++ +
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 192 EEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS 251
+F G+ P ++ ++ CA ++ ++G+ +H V+ + ++ + FV
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 252 ALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEA 311
++ MY +CG + DA F++M ++++V +A++ YA +G + + EM S EA
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215
Query: 312 VPNYVTLVCVLSACSRAGAVEKGMKIFYS------------------------------M 341
N V+ +LS +R+G ++ + +F +
Sbjct: 216 --NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273
Query: 342 TLKYGIKPGAEHYACV----VDLLGRA-------------------------------GL 366
Y IK G CV +D+ G++ GL
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 367 VDRA---YEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG---NH 420
VD+A +E+ KE M + W +++ C GK I A LF+ + +G NH
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKD----IEALELFR-EMQVAGVKPNH 388
Query: 421 VLLSNMFAATG 431
V + +M A G
Sbjct: 389 VTIPSMLPACG 399
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ + PN T P + A + G+ H A++ + +V VG + DMY+K G
Sbjct: 379 MQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGR 438
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ + +F+ MP +NL WN+ ++ + G+ K + F +L RT +PD I+F + L+A
Sbjct: 439 INLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498
Query: 121 CSDCSLLQLG 130
C L G
Sbjct: 499 CGQVGLTDEG 508
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/580 (41%), Positives = 356/580 (61%), Gaps = 4/580 (0%)
Query: 8 PNDFTF-PCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADK 66
P D F L K + + + G+ +HA L+S HD+ +G + +MY+K G ++A K
Sbjct: 57 PADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARK 116
Query: 67 MFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL 126
+F++MP+R+ TW IS RP +A+ F + R G P+ T + + A +
Sbjct: 117 VFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERR 176
Query: 127 LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVV 186
G QLHGF V+ GFD NV V + L+D Y + + A++VFD + +NDVSW +++
Sbjct: 177 GCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAG 236
Query: 187 YVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGN 246
+ + E ++F R+G P F +S+ AC+ LE G+ VHA +K+ +
Sbjct: 237 HARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV 296
Query: 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306
F G+ L+DMY K GSI DA F+++ +R++V WN+++ YA G A+ FEEM
Sbjct: 297 AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMR- 355
Query: 307 MRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366
R PN ++ + VL+ACS +G +++G +Y + K GI P A HY VVDLLGRAG
Sbjct: 356 -RVGIRPNEISFLSVLTACSHSGLLDEGWH-YYELMKKDGIVPEAWHYVTVVDLLGRAGD 413
Query: 367 VDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426
++RA I+EMP+ PT ++W ALLNACR++ ELG AA+++F+LDP+D G HV+L N+
Sbjct: 414 LNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 473
Query: 427 FAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKL 486
+A+ GRW +A VRK+MK+ G+KK CSW+ ++N IH+F A D H + EI ++
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEV 533
Query: 487 REEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRIC 546
++K GY+PDT+ + V+++E+ + +HSEKIALAF L+ PPG I I KN+R+C
Sbjct: 534 LAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 593
Query: 547 GDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
GDCH+A K S +VGRE+IVRD NRFH F DG CSC DYW
Sbjct: 594 GDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 159/340 (46%), Gaps = 4/340 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M R SPN+FT + KA++A G QLH +K G +V VG + D+Y++ GL
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL 211
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
DDA +FD + RN +WNA I+ + A++ F + R G P ++ + A
Sbjct: 212 MDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGA 271
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CS L+ G+ +H ++++SG N L+D Y K + A+ +FD + ++ VSW
Sbjct: 272 CSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSW 331
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
S+L Y Q+ + F RR G+ P + SVL+AC+ L+ G + + K
Sbjct: 332 NSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK 391
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADMALS 299
+ + +VD+ G+ G + A +MP E W A++ + ++
Sbjct: 392 DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAY 451
Query: 300 SFEEMTSMRCEAVPNYVTLVCVLSACSR---AGAVEKGMK 336
+ E + + + +V L + ++ R A V K MK
Sbjct: 452 AAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMK 491
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 256/591 (43%), Positives = 367/591 (62%), Gaps = 6/591 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MRR I P FT + ++L G+Q+H +LK G +V V + +Y++TG
Sbjct: 406 MRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGY 465
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRP-KNAIDAFINLRRTGGEPDLITFCAFLN 119
++ K+F MPE + +WN+ I R A+ F+N +R G + + ITF + L+
Sbjct: 466 LNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLS 525
Query: 120 ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKND-V 178
A S S +LG+Q+HG +++ + N L+ YGKC E+ + +F + ++ D V
Sbjct: 526 AVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNV 585
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
+W SM+ Y+ N + + G FM ++VLSA A +A LE G VHA +
Sbjct: 586 TWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACS 645
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
V+AC+E ++ VGSALVDMY KCG + A FN MP RN WN++I GYA G + AL
Sbjct: 646 VRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEAL 705
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
FE M + + P++VT V VLSACS AG +E+G K F SM+ YG+ P EH++C+
Sbjct: 706 KLFETM-KLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMA 764
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNAC-RVYG-KPELGRIAADNLFKLDPND 416
D+LGRAG +D+ + I++MPM+P + +W +L AC R G K ELG+ AA+ LF+L+P +
Sbjct: 765 DVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPEN 824
Query: 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERN 476
+ N+VLL NM+AA GRWE+ RK+MKD +KK AG SW+++K+ +H+F A D SH
Sbjct: 825 AVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDA 884
Query: 477 TEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAI-PPGV 535
I L +L +M+ AGY+P T FALYD+E+E K + +HSEK+A+AF L A +
Sbjct: 885 DVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTL 944
Query: 536 PIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
PIRI KNLR+CGDCHSAFK+IS I GR++I+RD+NRFH F DG CSCSD+W
Sbjct: 945 PIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 194/401 (48%), Gaps = 15/401 (3%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTG--KQLHALALKSGQIHDVFVGCSAFDMYSKT 58
M+ + P ++TF L + +L P +Q+ KSG + D+FVG ++K+
Sbjct: 197 MQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKS 256
Query: 59 GLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRR-TGGEPDLITFCAF 117
G A K+F++M RN T N + V + A F+++ P+ ++
Sbjct: 257 GSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVIL 314
Query: 118 LNACSDCSL-----LQLGRQLHGFLVRSGF-DGNVSVCNGLVDFYGKCNEVGLAKVVFDG 171
L++ + SL L+ GR++HG ++ +G D V + NGLV+ Y KC + A+ VF
Sbjct: 315 LSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYF 374
Query: 172 IIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG 231
+ DK+ VSW SM+ QN + + + RR + P F + S LS+CA + +LG
Sbjct: 375 MTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLG 434
Query: 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
+ +H ++K ++ N+ V +AL+ +Y + G + + F+ MPE + V WN+IIG A
Sbjct: 435 QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARS 494
Query: 292 GHA-DMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG 350
+ A+ F + + R N +T VLSA S E G +I + + LK I
Sbjct: 495 ERSLPEAVVCF--LNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQI-HGLALKNNIADE 551
Query: 351 AEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLN 391
A ++ G+ G +D +I M R W ++++
Sbjct: 552 ATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMIS 592
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 23/342 (6%)
Query: 32 LHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGR 91
H+ K+ DV++ + + Y +TG A K+FDEMP RN +W +S G
Sbjct: 23 FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82
Query: 92 PKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQL--GRQLHGFLVRSGFDGNVSVC 149
K A+ ++ + G + F + L AC + + + GRQ+HG + + + + V
Sbjct: 83 HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142
Query: 150 NGLVDFYGKC-NEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGV 208
N L+ Y KC VG A F I KN VSW S++ VY Q ++ + ++F + + +G
Sbjct: 143 NVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGS 202
Query: 209 EPKDFMISS-VLSACARI-AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266
P ++ S V +AC+ + L + K+ + ++FVGS LV + K GS+ A
Sbjct: 203 RPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYA 262
Query: 267 EIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326
FN+M RN V N ++ G Q + A F +M SM + +YV L+
Sbjct: 263 RKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPE-- 320
Query: 327 RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368
YS+ + G+K G E + V+ GLVD
Sbjct: 321 ------------YSLAEEVGLKKGREVHGHVIT----TGLVD 346
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/406 (26%), Positives = 187/406 (46%), Gaps = 22/406 (5%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIP--VTGKQLHALALKSGQIHDVFVGCSAFDMYSK- 57
M +E I N + F + +A + + G+Q+H L K D V MY K
Sbjct: 93 MVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKC 152
Query: 58 TGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAF 117
G A F ++ +N +WN+ IS G ++A F +++ G P TF +
Sbjct: 153 IGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSL 212
Query: 118 LNACSDCSL----LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173
+ CSL ++L Q+ + +SG ++ V +GLV + K + A+ VF+ +
Sbjct: 213 VTTA--CSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQME 270
Query: 174 DKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE-GVEPKDFMISSVLS-----ACARIAG 227
+N V+ ++V V+ E ++F+ V P+ ++I +LS + A G
Sbjct: 271 TRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVI--LLSSFPEYSLAEEVG 328
Query: 228 LELGRSVHA-VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIG 286
L+ GR VH V V+ + +G+ LV+MY KCGSI DA F M +++ V WN++I
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388
Query: 287 GYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG 346
G G A+ ++ M R + +P TL+ LS+C+ + G +I + +LK G
Sbjct: 389 GLDQNGCFIEAVERYKSMR--RHDILPGSFTLISSLSSCASLKWAKLGQQI-HGESLKLG 445
Query: 347 IKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNA 392
I ++ L G ++ +I MP +S W +++ A
Sbjct: 446 IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVS-WNSIIGA 490
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 144/327 (44%), Gaps = 19/327 (5%)
Query: 130 GRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQ 189
R H L ++ D +V +CN L++ Y + + A+ VFD + +N VSW ++ Y +
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 190 NYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA--GLELGRSVHAVAVKACVEGNI 247
N E + +EG+ + SVL AC I G+ GR +H + K +
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
Query: 248 FVGSALVDMYGKC-GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306
V + L+ MY KC GS+ A AF + +N V WN+II Y+ G S+F +S
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQR---SAFRIFSS 196
Query: 307 MRCEAV--PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
M+ + Y V +ACS + ++ K G+ + +V ++
Sbjct: 197 MQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKS 256
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
G + A ++ +M R +++ G ++ R E ++ D +D + +LLS
Sbjct: 257 GSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLS 316
Query: 425 NMFAATGRWEEADLVRKEMKDVGIKKG 451
+ + E L ++VG+KKG
Sbjct: 317 S-------FPEYSLA----EEVGLKKG 332
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/582 (40%), Positives = 344/582 (59%), Gaps = 4/582 (0%)
Query: 6 ISPNDFTFPCLFKASSALHIPVT-GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDA 64
+ P+ +T + KA+S+L ++ KQ+H A+K + D FV + D YS+ +A
Sbjct: 412 LKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA 471
Query: 65 DKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124
+ +F E +L WNA ++ + F + + G D T C
Sbjct: 472 EILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFL 530
Query: 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML 184
+ G+Q+H + ++SG+D ++ V +G++D Y KC ++ A+ FD I +DV+W +M+
Sbjct: 531 FAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMI 590
Query: 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244
++N EEE +F R GV P +F I+++ A + + LE GR +HA A+K
Sbjct: 591 SGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT 650
Query: 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEM 304
+ FVG++LVDMY KCGSI DA F ++ N+ WNA++ G A G L F++M
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQM 710
Query: 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
S+ + P+ VT + VLSACS +G V + K SM YGIKP EHY+C+ D LGRA
Sbjct: 711 KSLGIK--PDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
GLV +A +I+ M M + S++ LL ACRV G E G+ A L +L+P DS +VLLS
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 425 NMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLT 484
NM+AA +W+E L R MK +KK G SWI VKN+IHIF D S+ + I +
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVK 888
Query: 485 KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLR 544
+ ++K GY+P+T+F L DVEEEEK + +HSEK+A+AFGL++ PP PIR+ KNLR
Sbjct: 889 DMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLR 948
Query: 545 ICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+CGDCH+A K+I+ + RE+++RD NRFHRF DG CSC DYW
Sbjct: 949 VCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 190/391 (48%), Gaps = 6/391 (1%)
Query: 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMF 68
+ TF + + + G+Q+H +ALK G + V S +MY K A +F
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 69 DEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL-L 127
D M ER+L +WN+ I+ G A+ F+ L R G +PD T + L A S L
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433
Query: 128 QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVY 187
L +Q+H ++ + V L+D Y + + A+++F+ + + V+W +M+ Y
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGY 492
Query: 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNI 247
Q+++ ++F ++G DF +++V C + + G+ VHA A+K+ + ++
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSM 307
+V S ++DMY KCG + A+ AF+ +P + V W +I G G + A F +M M
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLM 612
Query: 308 RCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367
+P+ T+ + A S A+E+G +I ++ LK +VD+ + G +
Sbjct: 613 --GVLPDEFTIATLAKASSCLTALEQGRQI-HANALKLNCTNDPFVGTSLVDMYAKCGSI 669
Query: 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGK 398
D AY + K + M I+ W A+L +G+
Sbjct: 670 DDAYCLFKRIEMM-NITAWNAMLVGLAQHGE 699
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 156/324 (48%), Gaps = 10/324 (3%)
Query: 80 NAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVR 139
N +S + G+ + F ++ + E D +TF L L LG+Q+H ++
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 140 SGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQM 199
G D ++V N L++ Y K + G A+ VFD + +++ +SW S++ QN E +
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 200 FLTARREGVEPKDFMISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258
F+ R G++P + ++SVL A + + GL L + VH A+K + FV +AL+D Y
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463
Query: 259 KCGSIQDAEIAFNKMPERNLVCWNAIIGGY--AHQGHADMALSSFEEMTSMRCEAVPNYV 316
+ +++AEI F + +LV WNA++ GY +H GH + L + R +
Sbjct: 464 RNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDD----F 518
Query: 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376
TL V C A+ +G ++ ++ +K G + ++D+ + G + A
Sbjct: 519 TLATVFKTCGFLFAINQGKQV-HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 577
Query: 377 MPMRPTISVWGALLNACRVYGKPE 400
+P+ P W +++ C G+ E
Sbjct: 578 IPV-PDDVAWTTMISGCIENGEEE 600
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 10/346 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M ++ +DFT +FK L GKQ+HA A+KSG D++V DMY K G
Sbjct: 508 MHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGD 567
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
A FD +P + W IS + G + A F +R G PD T A
Sbjct: 568 MSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKA 627
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
S + L+ GRQ+H ++ + V LVD Y KC + A +F I N +W
Sbjct: 628 SSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAW 687
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGL--ELGRSVHAVA 238
+MLV Q+ E + Q+F + G++P VLSAC+ +GL E + + ++
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSH-SGLVSEAYKHMRSMH 746
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADMA 297
++ I S L D G+ G ++ AE M E + + ++ QG +
Sbjct: 747 GDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETG 806
Query: 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSR------AGAVEKGMKI 337
++ + YV L + +A S+ A + KG K+
Sbjct: 807 KRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 117 FLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKN 176
FL S L LG+ H ++ + + N L+ Y KC + A+ VFD + D++
Sbjct: 45 FLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRD 104
Query: 177 DVSWCSMLVVYVQNYE--EENGCQMFL---TARREGVEPKDFMISSVLSACARIAGLELG 231
VSW S+L Y Q+ E EN Q FL R++ V +S +L C +
Sbjct: 105 LVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS 164
Query: 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
S H A K ++G+ FV ALV++Y K G +++ ++ F +MP R++V WN ++ Y
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224
Query: 292 GHADMA--LSSFEEMTSMRCEAVPNYVTL 318
G + A LSS + + PN +TL
Sbjct: 225 GFKEEAIDLSSAFHSSGLN----PNEITL 249
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 131/324 (40%), Gaps = 40/324 (12%)
Query: 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYI----- 83
GK HA L + + F+ + MYSK G A ++FD+MP+R+L +WN+ +
Sbjct: 58 GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117
Query: 84 SNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFD 143
S+ + + A F LR+ +T L C + HG+ + G D
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLD 177
Query: 144 GNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTA 203
G+ V LV+ Y K +V KV+F+ + ++ V W ML Y++ +E +
Sbjct: 178 GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 237
Query: 204 RREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263
G+ P + L ARI+ G A VK+ GN S+
Sbjct: 238 HSSGLNPNEI----TLRLLARIS----GDDSDAGQVKSFANGN------------DASSV 277
Query: 264 QDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323
+EI F N + Y H G L F +M E + VT + +L+
Sbjct: 278 --SEIIFR----------NKGLSEYLHSGQYSALLKCFADMVESDVEC--DQVTFILMLA 323
Query: 324 ACSRAGAVEKGMKIFYSMTLKYGI 347
+ ++ G ++ + M LK G+
Sbjct: 324 TAVKVDSLALGQQV-HCMALKLGL 346
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/586 (40%), Positives = 346/586 (59%), Gaps = 3/586 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M E + P+ T + A SAL + GK++H A++SG V + + DMY+K G
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ A ++FD M ERN+ +WN+ I V PK A+ F + G +P ++ L+A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+D L+ GR +H V G D NVSV N L+ Y KC EV A +F + + VSW
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M++ + QN + F R V+P F SV++A A ++ + +H V ++
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+C++ N+FV +ALVDMY KCG+I A + F+ M ER++ WNA+I GY G AL
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
FEEM + PN VT + V+SACS +G VE G+K FY M Y I+ +HY +VDL
Sbjct: 527 FEEMQKGTIK--PNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDL 584
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG ++ A++ I +MP++P ++V+GA+L AC+++ AA+ LF+L+P+D G H
Sbjct: 585 LGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYH 644
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLL+N++ A WE+ VR M G++K GCS + +KN +H F + T+H + +I
Sbjct: 645 VLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIY 704
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
A L KL +K AGY+PDTN L VE + K + HSEK+A++FGL+ G I +
Sbjct: 705 AFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVR 763
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR+C DCH+A K+IS + GRE++VRD RFH F +G CSC DYW
Sbjct: 764 KNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 219 bits (557), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 214/411 (52%), Gaps = 8/411 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR + + P + F L K GK++H L +KSG D+F +MY+K
Sbjct: 126 MRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ 185
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
++A K+FD MPER+L +WN ++ G + A++ ++ +P IT + L A
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
S L+ +G+++HG+ +RSGFD V++ LVD Y KC + A+ +FDG++++N VSW
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
SM+ YVQN + +F EGV+P D + L ACA + LE GR +H ++V+
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
++ N+ V ++L+ MY KC + A F K+ R LV WNA+I G+A G AL+
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F +M S + P+ T V V++A + ++ K + + ++ + +VD+
Sbjct: 426 FSQMRSRTVK--PDTFTYVSVITAIAEL-SITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411
+ G + A I M R ++ W A+++ YG G+ AA LF+
Sbjct: 483 YAKCGAIMIARLIFDMMSER-HVTTWNAMIDG---YGTHGFGK-AALELFE 528
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 188/371 (50%), Gaps = 6/371 (1%)
Query: 30 KQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLG 89
+Q+ L K+G + F ++ + G D+A ++F+ + + ++ +
Sbjct: 54 RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113
Query: 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVC 149
A+ F+ +R EP + F L C D + L++G+++HG LV+SGF ++
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173
Query: 150 NGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE 209
GL + Y KC +V A+ VFD + +++ VSW +++ Y QN +M + E ++
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233
Query: 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIA 269
P I SVL A + + + +G+ +H A+++ + + + +ALVDMY KCGS++ A
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293
Query: 270 FNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV-PNYVTLVCVLSACSRA 328
F+ M ERN+V WN++I Y + A+ F++M E V P V+++ L AC+
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD---EGVKPTDVSVMGALHACADL 350
Query: 329 GAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGA 388
G +E+G + + ++++ G+ ++ + + VD A + ++ R +S W A
Sbjct: 351 GDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVS-WNA 408
Query: 389 LLNACRVYGKP 399
++ G+P
Sbjct: 409 MILGFAQNGRP 419
Score = 40.0 bits (92), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 13/187 (6%)
Query: 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNA 283
R + L+ R + + K + F + LV ++ + GS+ +A F + + V ++
Sbjct: 46 RCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105
Query: 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVP---NYVTLVCVLSACSRAGAVEKGMKIFYS 340
++ G+A D AL F M E V Y+ VC A R G G+ +
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165
Query: 341 MTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400
+L G E ++ + V+ A ++ MP R +S W ++ Y +
Sbjct: 166 FSLDLFAMTGLE------NMYAKCRQVNEARKVFDRMPERDLVS-WNTIVAG---YSQNG 215
Query: 401 LGRIAAD 407
+ R+A +
Sbjct: 216 MARMALE 222
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/588 (38%), Positives = 347/588 (59%), Gaps = 5/588 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ +SP+ FTFP L KA S L G+ +HA + G DVFV +Y+K
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 61 KDDADKMFD--EMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118
A +F+ +PER + +W A +S G P A++ F +R+ +PD + + L
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVL 229
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
NA + L+ GR +H +V+ G + + L Y KC +V AK++FD + N +
Sbjct: 230 NAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLI 289
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
W +M+ Y +N MF + V P I+S +SACA++ LE RS++
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
++ ++F+ SAL+DM+ KCGS++ A + F++ +R++V W+A+I GY G A A+
Sbjct: 350 GRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAI 409
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
S + M R PN VT + +L AC+ +G V +G F M + I P +HYACV+
Sbjct: 410 SLYRAME--RGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVI 466
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418
DLLGRAG +D+AYE+IK MP++P ++VWGALL+AC+ + ELG AA LF +DP+++G
Sbjct: 467 DLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTG 526
Query: 419 NHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTE 478
++V LSN++AA W+ VR MK+ G+ K GCSW+ V+ R+ F+ D SH R E
Sbjct: 527 HYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEE 586
Query: 479 IQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIR 538
I+ + + +K G++ + + +L+D+ +EE + HSE+IA+A+GLI+ P G P+R
Sbjct: 587 IERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLR 646
Query: 539 ITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
ITKNLR C +CH+A K IS +V RE++VRD NRFH F DG CSC DYW
Sbjct: 647 ITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 192/371 (51%), Gaps = 6/371 (1%)
Query: 30 KQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLG 89
KQ+HA L G F+ S G A ++FD++P + WNA I
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVC 149
++A+ + N++ PD TF L ACS S LQ+GR +H + R GFD +V V
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 150 NGLVDFYGKCNEVGLAKVVFDG--IIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207
NGL+ Y KC +G A+ VF+G + ++ VSW +++ Y QN E ++F R+
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 208 VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267
V+P + SVL+A + L+ GRS+HA VK +E + +L MY KCG + A+
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 268 IAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327
I F+KM NL+ WNA+I GYA G+A A+ F EM + + P+ +++ +SAC++
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK--DVRPDTISITSAISACAQ 335
Query: 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWG 387
G++E+ + Y + + + ++D+ + G V+ A ++ + + + VW
Sbjct: 336 VGSLEQA-RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWS 393
Query: 388 ALLNACRVYGK 398
A++ ++G+
Sbjct: 394 AMIVGYGLHGR 404
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/586 (39%), Positives = 339/586 (57%), Gaps = 2/586 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
+R+ + + FTFP + KA + G LH+L +K G HDV S +YS +G
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DA K+FDE+P+R++ TW A S GR + AID F + G +PD L+A
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C L G + ++ N V LV+ Y KC ++ A+ VFD +++K+ V+W
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+ Y N + G ++FL +E ++P F I LS+CA + L+LG ++ +
Sbjct: 282 STMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR 341
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
N+F+ +AL+DMY KCG++ F +M E+++V NA I G A GH ++ +
Sbjct: 342 HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAV 401
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F + + P+ T + +L C AG ++ G++ F +++ Y +K EHY C+VDL
Sbjct: 402 FGQTEKLGIS--PDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDL 459
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
GRAG++D AY +I +MPMRP VWGALL+ CR+ +L L L+P ++GN+
Sbjct: 460 WGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNY 519
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
V LSN+++ GRW+EA VR M G+KK G SWI ++ ++H F A D SH + +I
Sbjct: 520 VQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIY 579
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
A L L EM+ G++P T F +DVEEEEK +G+HSEK+A+A GLI+ G IR+
Sbjct: 580 AKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVV 639
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR+CGDCH K IS I RE++VRDNNRFH F +G CSC+DYW
Sbjct: 640 KNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 168/364 (46%), Gaps = 11/364 (3%)
Query: 30 KQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADK----MFDEMPERNLATWNAYISN 85
KQ+H + HD F+ ++ K L K +F N+ +N+ I+
Sbjct: 30 KQIHVSLINHHLHHDTFL----VNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLING 85
Query: 86 AVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN 145
V +D F+++R+ G TF L AC+ S +LG LH +V+ GF+ +
Sbjct: 86 FVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHD 145
Query: 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARR 205
V+ L+ Y + A +FD I D++ V+W ++ Y + +F
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVE 205
Query: 206 EGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265
GV+P + I VLSAC + L+ G + + ++ N FV + LV++Y KCG ++
Sbjct: 206 MGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEK 265
Query: 266 AEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC 325
A F+ M E+++V W+ +I GYA + F +M + P+ ++V LS+C
Sbjct: 266 ARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK--PDQFSIVGFLSSC 323
Query: 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISV 385
+ GA++ G + S+ ++ ++D+ + G + R +E+ KEM + + +
Sbjct: 324 ASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382
Query: 386 WGAL 389
A+
Sbjct: 383 NAAI 386
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/600 (38%), Positives = 352/600 (58%), Gaps = 16/600 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQI-HDVFVGCSAFDMYSKTG 59
M E + P++FT + A S L + TGK+LHA ALK+G + + FVG + DMY
Sbjct: 293 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352
Query: 60 LKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE-PDLITFCAFL 118
++FD M +R + WNA I+ K A+ FI + + G + T +
Sbjct: 353 QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 412
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
AC +HGF+V+ G D + V N L+D Y + ++ +A +F + D++ V
Sbjct: 413 PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV 472
Query: 179 SWCSMLVVYVQNYEEENGCQMFLT-----------ARREGVEPKDFMISSVLSACARIAG 227
+W +M+ YV + E+ + A R ++P + ++L +CA ++
Sbjct: 473 TWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSA 532
Query: 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGG 287
L G+ +HA A+K + ++ VGSALVDMY KCG +Q + F+++P++N++ WN II
Sbjct: 533 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 592
Query: 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI 347
Y G+ A+ M M PN VT + V +ACS +G V++G++IFY M YG+
Sbjct: 593 YGMHGNGQEAIDLLRMM--MVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 650
Query: 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMR-PTISVWGALLNACRVYGKPELGRIAA 406
+P ++HYACVVDLLGRAG + AY+++ MP W +LL A R++ E+G IAA
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710
Query: 407 DNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIF 466
NL +L+PN + ++VLL+N++++ G W++A VR+ MK+ G++K GCSWI + +H F
Sbjct: 711 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKF 770
Query: 467 QAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAF 526
A D+SH ++ ++ L L E M+ GY+PDT+ L++VEE+EK + HSEK+A+AF
Sbjct: 771 VAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAF 830
Query: 527 GLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
G++ PG IR+ KNLR+C DCH A KFIS IV RE+I+RD RFHRF +G CSC DYW
Sbjct: 831 GILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 196/391 (50%), Gaps = 9/391 (2%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQ-IHDVFVGCSAFDMYSKTGLKDDA 64
I P+++ FP L KA + L GKQ+HA K G + V V + ++Y K G
Sbjct: 93 IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 65 DKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124
K+FD + ERN +WN+ IS+ + + A++AF + EP T + + ACS+
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 125 SL---LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWC 181
+ L +G+Q+H + +R G + N + N LV YGK ++ +KV+ ++ V+W
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271
Query: 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK- 240
++L QN + + EGVEP +F ISSVL AC+ + L G+ +HA A+K
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
++ N FVGSALVDMY C + F+ M +R + WNA+I GY+ H AL
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 391
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F M + N T+ V+ AC R+GA + I + +K G+ ++D+
Sbjct: 392 FIGMEE-SAGLLANSTTMAGVVPACVRSGAFSRKEAI-HGFVVKRGLDRDRFVQNTLMDM 449
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLN 391
R G +D A I +M R ++ W ++
Sbjct: 450 YSRLGKIDIAMRIFGKMEDRDLVT-WNTMIT 479
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 138/278 (49%), Gaps = 10/278 (3%)
Query: 74 RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQL 133
R+ W + + V + A+ ++++ G +PD F A L A +D ++LG+Q+
Sbjct: 60 RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119
Query: 134 HGFLVRSGFD-GNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYE 192
H + + G+ +V+V N LV+ Y KC + G VFD I ++N VSW S++ +
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179
Query: 193 EENGCQMFLTARREGVEPKDFMISSVLSACARIA---GLELGRSVHAVAVKACVEGNIFV 249
E + F E VEP F + SV++AC+ + GL +G+ VHA ++ E N F+
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFI 238
Query: 250 GSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRC 309
+ LV MYGK G + +++ R+LV WN ++ + L + E + M
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN---EQLLEALEYLREMVL 295
Query: 310 EAV-PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG 346
E V P+ T+ VL ACS + G K ++ LK G
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTG-KELHAYALKNG 332
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/587 (39%), Positives = 343/587 (58%), Gaps = 3/587 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR+ P+DFTF + KA LH G+QLHAL++ +G D VG D YSK
Sbjct: 241 MRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDR 300
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ +FDEMPE + ++N IS+ + + ++ F ++ G + F L+
Sbjct: 301 VLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
++ S LQ+GRQLH + + D + V N LVD Y KC A+++F + + VSW
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSW 420
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+++ YVQ G ++F R + ++VL A A A L LG+ +HA ++
Sbjct: 421 TALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIR 480
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ N+F GS LVDMY KCGSI+DA F +MP+RN V WNA+I +A G + A+ +
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F +M + P+ V+++ VL+ACS G VE+G + F +M+ YGI P +HYAC++DL
Sbjct: 541 FAKMIESGLQ--PDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDL 598
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDP-NDSGN 419
LGR G A +++ EMP P +W ++LNACR++ L AA+ LF ++ D+
Sbjct: 599 LGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAA 658
Query: 420 HVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEI 479
+V +SN++AA G WE+ V+K M++ GIKK SW+ V ++IH+F + D +H EI
Sbjct: 659 YVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEI 718
Query: 480 QAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRI 539
+ +L E++ GY PDT+ + DV+E+ K+ + +HSE++A+AF LI+ P G PI +
Sbjct: 719 VRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVV 778
Query: 540 TKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR C DCH+A K IS IV RE+ VRD +RFH F +G CSC DYW
Sbjct: 779 MKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/391 (29%), Positives = 196/391 (50%), Gaps = 8/391 (2%)
Query: 5 CISPNDFTFPCLFKA-SSALHIPVTGKQLHALALKSGQIHDVFVGCS--AFDMYSKTGLK 61
C P+ TF L + A+ G Q+HA A+K G + F+ S Y +
Sbjct: 142 CTLPDHVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRL 200
Query: 62 DDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC 121
D A +F+E+PE++ T+N I+ G +I F+ +R++G +P TF L A
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV 260
Query: 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWC 181
LG+QLH V +GF + SV N ++DFY K + V +++FD + + + VS+
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYN 320
Query: 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241
++ Y Q + E F + G + ++F +++LS A ++ L++GR +H A+ A
Sbjct: 321 VVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLA 380
Query: 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSF 301
+ + VG++LVDMY KC ++AE+ F +P+R V W A+I GY +G L F
Sbjct: 381 TADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLF 440
Query: 302 EEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLL 361
+M A + T VL A + ++ G K ++ ++ G + +VD+
Sbjct: 441 TKMRGSNLRA--DQSTFATVLKASASFASLLLG-KQLHAFIIRSGNLENVFSGSGLVDMY 497
Query: 362 GRAGLVDRAYEIIKEMPMRPTISVWGALLNA 392
+ G + A ++ +EMP R +S W AL++A
Sbjct: 498 AKCGSIKDAVQVFEEMPDRNAVS-WNALISA 527
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 158/340 (46%), Gaps = 10/340 (2%)
Query: 57 KTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGG--EPDLITF 114
KTG A +FD MP+R + TW + A F + R+ PD +TF
Sbjct: 91 KTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTF 150
Query: 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGN--VSVCNGLVDFYGKCNEVGLAKVVFDGI 172
L C+D Q+H F V+ GFD N ++V N L+ Y + + LA V+F+ I
Sbjct: 151 TTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEI 210
Query: 173 IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGR 232
+K+ V++ +++ Y ++ +FL R+ G +P DF S VL A + LG+
Sbjct: 211 PEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQ 270
Query: 233 SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG 292
+HA++V + VG+ ++D Y K + + + F++MPE + V +N +I Y+
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQAD 330
Query: 293 HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE 352
+ +L F EM M + +LS + +++ G ++ L
Sbjct: 331 QYEASLHFFREMQCMGFDR--RNFPFATMLSIAANLSSLQMGRQLHCQALL--ATADSIL 386
Query: 353 HYA-CVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLN 391
H +VD+ + + + A I K +P R T+S W AL++
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTALIS 425
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 7/238 (2%)
Query: 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204
N N ++ + K +V A+ +FD + D+ V+W ++ Y +N + ++F
Sbjct: 78 NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137
Query: 205 REG--VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIF--VGSALVDMYGKC 260
R P +++L C VHA AVK + N F V + L+ Y +
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV 197
Query: 261 GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320
+ A + F ++PE++ V +N +I GY G ++ F +M + P+ T
Sbjct: 198 RRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ--PSDFTFSG 255
Query: 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP 378
VL A G ++ +++++ G A ++D + V + EMP
Sbjct: 256 VLKAVVGLHDFALGQQL-HALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP 312
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/595 (38%), Positives = 348/595 (58%), Gaps = 11/595 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR+ + P +FPC KA S+L +GKQ H A G D+FV + MYS G
Sbjct: 67 MRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF------ 114
+DA K+FDE+P+RN+ +W + I L G +A+ F +L + D F
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGL 186
Query: 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE--VGLAKVVFDGI 172
+ ++ACS L +H F+++ GFD VSV N L+D Y K E V +A+ +FD I
Sbjct: 187 VSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQI 246
Query: 173 IDKNDVSWCSMLVVYVQNYEEENGCQMFLT-ARREGVEPKDFMISSVLSACARIAGLELG 231
+DK+ VS+ S++ VY Q+ ++F + + V +S+VL A + L +G
Sbjct: 247 VDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG 306
Query: 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
+ +H ++ +E ++ VG++++DMY KCG ++ A AF++M +N+ W A+I GY
Sbjct: 307 KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366
Query: 292 GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351
GHA AL F M PNY+T V VL+ACS AG +G + F +M ++G++PG
Sbjct: 367 GHAAKALELFPAMIDSGVR--PNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGL 424
Query: 352 EHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411
EHY C+VDLLGRAG + +AY++I+ M M+P +W +LL ACR++ EL I+ LF+
Sbjct: 425 EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFE 484
Query: 412 LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDT 471
LD ++ G ++LLS+++A GRW++ + VR MK+ G+ K G S + + +H+F D
Sbjct: 485 LDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDE 544
Query: 472 SHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAI 531
H + +I L +L ++ AGY+ +T+ +DV+EEEK + HSEK+A+AFG++
Sbjct: 545 EHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNT 604
Query: 532 PPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
PG + + KNLR+C DCH+ K IS IV RE +VRD RFH F DG CSC DYW
Sbjct: 605 VPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 157/331 (47%), Gaps = 11/331 (3%)
Query: 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLH 134
++ +WN+ I++ G A+ AF ++R+ P +F + ACS + G+Q H
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99
Query: 135 GFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEE 194
G+ ++ V + L+ Y C ++ A+ VFD I +N VSW SM+ Y N
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159
Query: 195 NGCQMFLTARREGVEPKDFM------ISSVLSACARIAGLELGRSVHAVAVKACVEGNIF 248
+ +F + + D M + SV+SAC+R+ L S+H+ +K + +
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVS 219
Query: 249 VGSALVDMYGKCGS--IQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306
VG+ L+D Y K G + A F+++ +++ V +N+I+ YA G ++ A F +
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVK 279
Query: 307 MRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366
+ N +TL VL A S +GA+ G K + ++ G++ ++D+ + G
Sbjct: 280 NKV-VTFNAITLSTVLLAVSHSGALRIG-KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337
Query: 367 VDRAYEIIKEMPMRPTISVWGALLNACRVYG 397
V+ A + M + + W A++ ++G
Sbjct: 338 VETARKAFDRMKNK-NVRSWTAMIAGYGMHG 367
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 146/339 (43%), Gaps = 55/339 (16%)
Query: 167 VVFDGIIDKNDV-SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI 225
+F+ +DK DV SW S++ ++ + F + R+ + P + AC+ +
Sbjct: 30 TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89
Query: 226 AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAII 285
+ G+ H A + +IFV SAL+ MY CG ++DA F+++P+RN+V W ++I
Sbjct: 90 FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149
Query: 286 GGYAHQGHADMALSSFEEMTSMRCE----AVPNYVTLVCVLSACSRAGAVEKGM-KIFYS 340
GY G+A A+S F+++ + + + LV V+SACSR A KG+ + +S
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA--KGLTESIHS 207
Query: 341 MTLKYGIKPGAE---------------------------------HYACVVDLLGRAGLV 367
+K G G Y ++ + ++G+
Sbjct: 208 FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMS 267
Query: 368 DRAYEIIKEMPMRPTIS----VWGALLNACRVYGKPELGRIAADNLFKLDPNDS---GNH 420
+ A+E+ + + ++ +L A G +G+ D + ++ D G
Sbjct: 268 NEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISV 459
++ +M+ GR E A MK+ ++ SW ++
Sbjct: 328 II--DMYCKCGRVETARKAFDRMKNKNVR-----SWTAM 359
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/553 (40%), Positives = 335/553 (60%), Gaps = 20/553 (3%)
Query: 39 SGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDA 98
S + DV + Y+++G D+A ++FDE P +++ TW A +S + + A +
Sbjct: 244 SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAREL 303
Query: 99 FINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFD----GNVSVCNGLVD 154
F + E + +++ A L +++ ++L FD NVS N ++
Sbjct: 304 FDKM----PERNEVSWNAMLAGYVQGERMEMAKEL--------FDVMPCRNVSTWNTMIT 351
Query: 155 FYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFM 214
Y +C ++ AK +FD + ++ VSW +M+ Y Q+ ++F+ REG
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411
Query: 215 ISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274
SS LS CA + LELG+ +H VK E FVG+AL+ MY KCGSI++A F +M
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471
Query: 275 ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV-PNYVTLVCVLSACSRAGAVEK 333
+++V WN +I GY+ G ++AL FE SM+ E + P+ T+V VLSACS G V+K
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFE---SMKREGLKPDDATMVAVLSACSHTGLVDK 528
Query: 334 GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNAC 393
G + FY+MT YG+ P ++HYAC+VDLLGRAGL++ A+ ++K MP P ++WG LL A
Sbjct: 529 GRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS 588
Query: 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAG 453
RV+G EL AAD +F ++P +SG +VLLSN++A++GRW + +R M+D G+KK G
Sbjct: 589 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 648
Query: 454 CSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMT 513
SWI ++N+ H F D H EI A L +L MK AGY+ T+ L+DVEEEEK
Sbjct: 649 YSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKER 708
Query: 514 EVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFH 573
V +HSE++A+A+G++ + G PIR+ KNLR+C DCH+A K+++ I GR +I+RDNNRFH
Sbjct: 709 MVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFH 768
Query: 574 RFWDGYCSCSDYW 586
F DG CSC DYW
Sbjct: 769 HFKDGSCSCGDYW 781
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 179/427 (41%), Gaps = 91/427 (21%)
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF 114
Y + G + A K+FDEMPER+L +WN I ++ R G +L
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIK-------------GYVRNRNLGKARELFEI 151
Query: 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID 174
+ CS ++L SG+ NG VD A+ VFD + +
Sbjct: 152 MPERDVCSWNTML------------SGY-----AQNGCVDD---------ARSVFDRMPE 185
Query: 175 KNDVSWCSMLVVYVQNYEEENGCQMF-----------------LTARREGVEPKDFMIS- 216
KNDVSW ++L YVQN + E C +F +++ VE + F S
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245
Query: 217 ---------SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267
++++ A+ ++ R + ++ V+ ++F +A+V Y + +++A
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFD---ESPVQ-DVFTWTAMVSGYIQNRMVEEAR 301
Query: 268 IAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327
F+KMPERN V WNA++ GY +MA F+ M C V + T++ + C
Sbjct: 302 ELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP---CRNVSTWNTMITGYAQC-- 356
Query: 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPM---RPTIS 384
G + + +F M K +A ++ ++G A + +M R S
Sbjct: 357 -GKISEAKNLFDKMP-----KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRS 410
Query: 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDS---GNHVLLSNMFAATGRWEEADLVRK 441
+ + L+ C ELG+ L K GN +LL M+ G EEA+ + K
Sbjct: 411 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL--MYCKCGSIEEANDLFK 468
Query: 442 EM--KDV 446
EM KD+
Sbjct: 469 EMAGKDI 475
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M RE N +F + + GKQLH +K G FVG + MY K G
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 459
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
++A+ +F EM +++ +WN I+ G + A+ F +++R G +PD T A L+A
Sbjct: 460 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSA 519
Query: 121 CSDCSLLQLGRQ 132
CS L+ GRQ
Sbjct: 520 CSHTGLVDKGRQ 531
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 22/242 (9%)
Query: 150 NGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE 209
NG++ Y + E LA+ +FD + +++ VSW M+ YV+N ++F E +
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF-----EIMP 153
Query: 210 PKDF-MISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEI 268
+D +++LS A+ ++ RSV E N +AL+ Y + +++A +
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSV----FDRMPEKNDVSWNALLSAYVQNSKMEEACM 209
Query: 269 AFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRA 328
F LV WN ++GG+ + A F+ M V + V+ +++ +++
Sbjct: 210 LFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN------VRDVVSWNTIITGYAQS 263
Query: 329 GAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGA 388
G +++ ++F ++ + +V + +V+ A E+ +MP R +S W A
Sbjct: 264 GKIDEARQLFDESPVQ-----DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS-WNA 317
Query: 389 LL 390
+L
Sbjct: 318 ML 319
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSF 301
C + +I + + Y + G +A F +MP + V +N +I GY G ++A F
Sbjct: 59 CGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLF 118
Query: 302 EEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLL 361
+EM + V+ ++ R + K ++F M + + ++
Sbjct: 119 DEMPE------RDLVSWNVMIKGYVRNRNLGKARELFEIMPER-----DVCSWNTMLSGY 167
Query: 362 GRAGLVDRAYEIIKEMPMRPTISVWGALLNA 392
+ G VD A + MP + +S W ALL+A
Sbjct: 168 AQNGCVDDARSVFDRMPEKNDVS-WNALLSA 197
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/544 (41%), Positives = 321/544 (59%), Gaps = 4/544 (0%)
Query: 44 DVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLR 103
DV + + YSK G + A ++FD M ER+L +WN I A+D F+ +R
Sbjct: 95 DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMR 154
Query: 104 RTGGEPDLITFCAFLNACS-DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEV 162
G + T + L+AC +C L+ ++LH V++ D N+ V L+D Y KC +
Sbjct: 155 NEGFKFSEFTISSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMI 213
Query: 163 GLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222
A VF+ + DK+ V+W SM+ YVQN E ++ A+R +E F +SSV+ AC
Sbjct: 214 KDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICAC 273
Query: 223 ARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWN 282
+ +A L G+ +HAV K+ N+FV S+ VDMY KCGS++++ I F+++ E+NL WN
Sbjct: 274 SNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWN 333
Query: 283 AIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342
II G+A + FE+M PN VT +LS C G VE+G + F M
Sbjct: 334 TIISGFAKHARPKEVMILFEKMQQDGMH--PNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 391
Query: 343 LKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELG 402
YG+ P HY+C+VD+LGRAGL+ AYE+IK +P PT S+WG+LL +CRVY EL
Sbjct: 392 TTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELA 451
Query: 403 RIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNR 462
+AA+ LF+L+P ++GNHVLLSN++AA +WEE RK ++D +KK G SWI +K++
Sbjct: 452 EVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDK 511
Query: 463 IHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKI 522
+H F ++ H R EI + L L + + GY P L+DVE +K + HSEK+
Sbjct: 512 VHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKL 571
Query: 523 ALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSC 582
AL FGL+ +P P+RI KNLRIC DCH K S R +IVRD NRFH F DG+CSC
Sbjct: 572 ALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSC 631
Query: 583 SDYW 586
D+W
Sbjct: 632 GDFW 635
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 173/329 (52%), Gaps = 7/329 (2%)
Query: 118 LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKND 177
L C+ + + HG ++R +G+V++ N L++ Y KC V LA+ VFDG+++++
Sbjct: 68 LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127
Query: 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237
VSW +M+ +Y +N E +FL R EG + +F ISSVLSAC + +H +
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCL 187
Query: 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297
+VK C++ N++VG+AL+D+Y KCG I+DA F M +++ V W++++ GY + + A
Sbjct: 188 SVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA 247
Query: 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357
L + M E N TL V+ ACS A+ +G K +++ K G +
Sbjct: 248 LLLYRRAQRMSLE--QNQFTLSSVICACSNLAALIEG-KQMHAVICKSGFGSNVFVASSA 304
Query: 358 VDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK--LDPN 415
VD+ + G + +Y I E+ + + +W +++ + +P+ I + + + + PN
Sbjct: 305 VDMYAKCGSLRESYIIFSEVQEK-NLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPN 363
Query: 416 DSGNHVLLSNMFAATGRWEEADLVRKEMK 444
+ LLS + TG EE K M+
Sbjct: 364 EVTFSSLLS-VCGHTGLVEEGRRFFKLMR 391
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 165/340 (48%), Gaps = 2/340 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR E ++FT + A + K+LH L++K+ +++VG + D+Y+K G+
Sbjct: 153 MRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 212
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
DA ++F+ M +++ TW++ ++ V + A+ + +R E + T + + A
Sbjct: 213 IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 272
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CS+ + L G+Q+H + +SGF NV V + VD Y KC + + ++F + +KN W
Sbjct: 273 CSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELW 332
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA-V 239
+++ + ++ + +F +++G+ P + SS+LS C +E GR +
Sbjct: 333 NTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRT 392
Query: 240 KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADMAL 298
+ N+ S +VD+ G+ G + +A +P + W +++ + ++A
Sbjct: 393 TYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAE 452
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIF 338
+ E++ + E N+V L + +A + + K K+
Sbjct: 453 VAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLL 492
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 214 MISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKM 273
++ +L CAR + ++ H ++ +EG++ + + L++ Y KCG ++ A F+ M
Sbjct: 63 LVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGM 122
Query: 274 PERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACS-RAGAV 331
ER+LV WN +IG Y AL F E MR E + T+ VLSAC A+
Sbjct: 123 LERSLVSWNTMIGLYTRNRMESEALDIFLE---MRNEGFKFSEFTISSVLSACGVNCDAL 179
Query: 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALL 390
E K + +++K I ++DL + G++ A ++ + M + +++ W +++
Sbjct: 180 E--CKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVT-WSSMV 235
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/586 (37%), Positives = 332/586 (56%), Gaps = 2/586 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ E I PN +T+P + K L G+Q+H+ +K+ + +V DMY+K G
Sbjct: 481 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 540
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
D A + +++ +W I+ A+ F + G D + ++A
Sbjct: 541 LDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSA 600
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+ L+ G+Q+H SGF ++ N LV Y +C ++ + + F+ ++++W
Sbjct: 601 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAW 660
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+++ + Q+ E ++F+ REG++ +F S + A + A ++ G+ VHAV K
Sbjct: 661 NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 720
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ V +AL+ MY KCGSI DAE F ++ +N V WNAII Y+ G AL S
Sbjct: 721 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDS 780
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F++M + PN+VTLV VLSACS G V+KG+ F SM +YG+ P EHY CVVD+
Sbjct: 781 FDQM--IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDM 838
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
L RAGL+ RA E I+EMP++P VW LL+AC V+ E+G AA +L +L+P DS +
Sbjct: 839 LTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATY 898
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VLLSN++A + +W+ DL R++MK+ G+KK G SWI VKN IH F D +H EI
Sbjct: 899 VLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIH 958
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
L + GY+ D L +++ E+K + HSEK+A++FGL+++P VPI +
Sbjct: 959 EYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVM 1018
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLR+C DCH+ KF+S + RE+IVRD RFH F G CSC DYW
Sbjct: 1019 KNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 180/395 (45%), Gaps = 4/395 (1%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
I P + F + A + G+QLH L LK G D +V + +Y G A+
Sbjct: 284 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE 343
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+F M +R+ T+N I+ G + A++ F + G EPD T + + ACS
Sbjct: 344 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
L G+QLH + + GF N + L++ Y KC ++ A F +N V W MLV
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 463
Query: 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245
Y + N ++F + E + P + S+L C R+ LELG +H+ +K +
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL 523
Query: 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMT 305
N +V S L+DMY K G + A + +++V W +I GY D AL++F +M
Sbjct: 524 NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583
Query: 306 SMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365
+ + V L +SAC+ A+++G +I ++ G +V L R G
Sbjct: 584 DRGIRS--DEVGLTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCG 640
Query: 366 LVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400
++ +Y ++ I+ W AL++ + G E
Sbjct: 641 KIEESYLAFEQTEAGDNIA-WNALVSGFQQSGNNE 674
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 185/392 (47%), Gaps = 12/392 (3%)
Query: 6 ISPNDFTFPCLF----KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLK 61
I PN T L K + +L G++LH+ LK G + + FD Y G
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLD---EGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 136
Query: 62 DDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC 121
A K+FDEMPER + TWN I F+ + P+ TF L AC
Sbjct: 137 YGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196
Query: 122 SDCSL-LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
S+ + Q+H ++ G + VCN L+D Y + V LA+ VFDG+ K+ SW
Sbjct: 197 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+ +N E ++F G+ P + SSVLSAC +I LE+G +H + +K
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ +V +ALV +Y G++ AE F+ M +R+ V +N +I G + G+ + A+
Sbjct: 317 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F+ M E P+ TL ++ ACS G + +G ++ ++ T K G + +++L
Sbjct: 377 FKRMHLDGLE--PDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFASNNKIEGALLNL 433
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNA 392
+ ++ A + E + + +W +L A
Sbjct: 434 YAKCADIETALDYFLETEVENVV-LWNVMLVA 464
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 190/399 (47%), Gaps = 9/399 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPV-TGKQLHALALKSGQIHDVFVGCSAF-DMYSKT 58
M E ++PN+ TF + +A + +Q+HA L G + D V C+ D+YS+
Sbjct: 177 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG-LRDSTVVCNPLIDLYSRN 235
Query: 59 GLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118
G D A ++FD + ++ ++W A IS AI F ++ G P F + L
Sbjct: 236 GFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVL 295
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
+AC L++G QLHG +++ GF + VCN LV Y + A+ +F + ++ V
Sbjct: 296 SACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 355
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
++ +++ Q E ++F +G+EP ++S++ AC+ L G+ +HA
Sbjct: 356 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
K N + AL+++Y KC I+ A F + N+V WN ++ Y G D
Sbjct: 416 TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLR 472
Query: 299 SSFEEMTSMRCEA-VPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357
+SF M+ E VPN T +L C R G +E G +I +S +K + A + +
Sbjct: 473 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQI-HSQIIKTNFQLNAYVCSVL 531
Query: 358 VDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVY 396
+D+ + G +D A++I+ + +S W ++ Y
Sbjct: 532 IDMYAKLGKLDTAWDILIRFAGKDVVS-WTTMIAGYTQY 569
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 199/433 (45%), Gaps = 14/433 (3%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M + + P+ T L A SA G+QLHA K G + + + ++Y+K
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+ A F E N+ WN + L +N+ F ++ P+ T+ + L
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C L+LG Q+H ++++ F N VC+ L+D Y K ++ A + K+ VSW
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 559
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+ Y Q ++ F G+ + +++ +SACA + L+ G+ +HA +
Sbjct: 560 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA---Q 616
Query: 241 ACVEG---NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297
ACV G ++ +ALV +Y +CG I+++ +AF + + + WNA++ G+ G+ + A
Sbjct: 617 ACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676
Query: 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357
L F M R N T + A S +++G ++ +++ K G E +
Sbjct: 677 LRVFVRMN--REGIDNNNFTFGSAVKAASETANMKQGKQV-HAVITKTGYDSETEVCNAL 733
Query: 358 VDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKL-DPND 416
+ + + G + A + E+ + +S W A++NA Y K G A D+ ++ N
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINA---YSKHGFGSEALDSFDQMIHSNV 789
Query: 417 SGNHVLLSNMFAA 429
NHV L + +A
Sbjct: 790 RPNHVTLVGVLSA 802
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 134/318 (42%), Gaps = 12/318 (3%)
Query: 106 GGEPDLITFCAFLNACSDCS-LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164
G P+ T L C + L GR+LH +++ G D N + L DFY ++
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138
Query: 165 AKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC-A 223
A VFD + ++ +W M+ +F+ E V P + S VL AC
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198
Query: 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNA 283
++ +HA + + + V + L+D+Y + G + A F+ + ++ W A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258
Query: 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343
+I G + A+ F +M + +P VLSAC + ++E G ++ + + L
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGI--MPTPYAFSSVLSACKKIESLEIGEQL-HGLVL 315
Query: 344 KYGIKPGAEHYAC--VVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRV--YGKP 399
K G ++ Y C +V L G + A I M R ++ + L+N YG+
Sbjct: 316 KLGF--SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVT-YNTLINGLSQCGYGEK 372
Query: 400 ELGRIAADNLFKLDPNDS 417
+ +L L+P+ +
Sbjct: 373 AMELFKRMHLDGLEPDSN 390
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 4/191 (2%)
Query: 202 TARREGVEPKDFMISSVLSACARIAG-LELGRSVHAVAVKACVEGNIFVGSALVDMYGKC 260
+ G+ P + +L C + G L+ GR +H+ +K ++ N + L D Y
Sbjct: 74 SVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFK 133
Query: 261 GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320
G + A F++MPER + WN +I A + F M S PN T
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSEN--VTPNEGTFSG 191
Query: 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMR 380
VL AC ++ ++ L G++ ++DL R G VD A + + ++
Sbjct: 192 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 251
Query: 381 PTISVWGALLN 391
S W A+++
Sbjct: 252 DH-SSWVAMIS 261
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/559 (38%), Positives = 328/559 (58%), Gaps = 2/559 (0%)
Query: 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVL 88
G+++HA +K+ + ++ Y K +DA K+ DEMPE+N+ +W A IS
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130
Query: 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV 148
G A+ F + R+ G+P+ TF L +C S L LG+Q+HG +V+ +D ++ V
Sbjct: 131 TGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFV 190
Query: 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGV 208
+ L+D Y K ++ A+ +F+ + +++ VS +++ Y Q +E +MF EG+
Sbjct: 191 GSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGM 250
Query: 209 EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEI 268
P +S+L+A + +A L+ G+ H ++ + + ++L+DMY KCG++ A
Sbjct: 251 SPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARR 310
Query: 269 AFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRA 328
F+ MPER + WNA++ GY+ G L F M + P+ VTL+ VLS CS
Sbjct: 311 LFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEK-RVKPDAVTLLAVLSGCSHG 369
Query: 329 GAVEKGMKIFYSMTL-KYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWG 387
+ G+ IF M +YG KPG EHY C+VD+LGRAG +D A+E IK MP +PT V G
Sbjct: 370 RMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLG 429
Query: 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447
+LL ACRV+ ++G L +++P ++GN+V+LSN++A+ GRW + + VR M
Sbjct: 430 SLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKA 489
Query: 448 IKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVE 507
+ K G SWI + +H F A D +H R E+ A + ++ +MK AGY+PD + LYDV+
Sbjct: 490 VTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVD 549
Query: 508 EEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVR 567
EE+K + HSEK+AL FGLIA G+PIR+ KNLRIC DCH+ K S + REV +R
Sbjct: 550 EEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLR 609
Query: 568 DNNRFHRFWDGYCSCSDYW 586
D NRFH+ DG CSC DYW
Sbjct: 610 DKNRFHQIVDGICSCGDYW 628
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 164/316 (51%), Gaps = 8/316 (2%)
Query: 97 DAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFY 156
+A + + G E + A LNAC D L+ G+++H ++++ + + L+ FY
Sbjct: 38 EALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFY 97
Query: 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS 216
GKC+ + A+ V D + +KN VSW +M+ Y Q +F R +P +F +
Sbjct: 98 GKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFA 157
Query: 217 SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276
+VL++C R +GL LG+ +H + VK + +IFVGS+L+DMY K G I++A F +PER
Sbjct: 158 TVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPER 217
Query: 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMK 336
++V AII GYA G + AL F + S PNYVT +L+A S ++ G K
Sbjct: 218 DVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMS--PNYVTYASLLTALSGLALLDHG-K 274
Query: 337 IFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVY 396
+ L+ + A ++D+ + G + A + MP R IS W A+L Y
Sbjct: 275 QAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAIS-WNAMLVG---Y 330
Query: 397 GKPELGRIAADNLFKL 412
K LGR + LF+L
Sbjct: 331 SKHGLGREVLE-LFRL 345
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
+ E +SPN T+ L A S L + GKQ H L+ + S DMYSK G
Sbjct: 245 LHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 304
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLR-RTGGEPDLITFCAFLN 119
A ++FD MPER +WNA + G + ++ F +R +PD +T A L+
Sbjct: 305 LSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364
Query: 120 ACSDCSLLQLGRQLHGFLVRSG---FDGNVS 147
CS HG + +G FDG V+
Sbjct: 365 GCS-----------HGRMEDTGLNIFDGMVA 384
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/587 (38%), Positives = 332/587 (56%), Gaps = 3/587 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR PN++TF KAS L K +H LK+ + D VG +Y++ G
Sbjct: 238 MRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGD 297
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
DA K+F+EMP+ ++ W+ I+ G A+D FI +R P+ T + LN
Sbjct: 298 MSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNG 357
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+ LG QLHG +V+ GFD ++ V N L+D Y KC ++ A +F + KN+VSW
Sbjct: 358 CAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSW 417
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+++V Y E MF A R V + SS L ACA +A ++LG VH +A+K
Sbjct: 418 NTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIK 477
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ V ++L+DMY KCG I+ A+ FN+M ++ WNA+I GY+ G AL
Sbjct: 478 TNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRI 537
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
+ M C+ PN +T + VLS CS AG +++G + F SM +GI+P EHY C+V L
Sbjct: 538 LDIMKDRDCK--PNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRL 595
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGR+G +D+A ++I+ +P P++ +W A+L+A E R +A+ + K++P D +
Sbjct: 596 LGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATY 655
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
VL+SNM+A +W +RK MK++G+KK G SWI + +H F + H I
Sbjct: 656 VLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLIN 715
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVP-IRI 539
ML L + AGY+PD N L D+++EEK + HSE++ALA+GL+ +P I I
Sbjct: 716 GMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILI 775
Query: 540 TKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRIC DCHSA K IS IV R++++RD NRFH F G CSC D+W
Sbjct: 776 MKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 172/390 (44%), Gaps = 23/390 (5%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M R CI ND P++ K +H LK G D+F + Y K G
Sbjct: 55 MLRRCIQKND---------------PISAKAIHCDILKKGSCLDLFATNILLNAYVKAGF 99
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
DA +FDEMPERN N G ++ I + L R G E + F +FL
Sbjct: 100 DKDALNLFDEMPERN----NVSFVTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKL 155
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
++ LH +V+ G+D N V L++ Y C V A+ VF+GI+ K+ V W
Sbjct: 156 FVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVW 215
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
++ YV+N E+ ++ R G P ++ + L A + + + VH +K
Sbjct: 216 AGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILK 275
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
C + VG L+ +Y + G + DA FN+MP+ ++V W+ +I + G + A+
Sbjct: 276 TCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDL 335
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F M VPN TL +L+ C+ G ++ + + +K G ++D+
Sbjct: 336 FIRMR--EAFVVPNEFTLSSILNGCAIGKCSGLGEQL-HGLVVKVGFDLDIYVSNALIDV 392
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALL 390
+ +D A ++ E+ + +S W ++
Sbjct: 393 YAKCEKMDTAVKLFAELSSKNEVS-WNTVI 421
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/405 (25%), Positives = 183/405 (45%), Gaps = 7/405 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
+ RE N F K +L LH+ +K G + FVG + + YS G
Sbjct: 137 LHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGS 196
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
D A +F+ + +++ W +S V G ++++ +R G P+ TF L A
Sbjct: 197 VDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA 256
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
+ +HG ++++ + + V GL+ Y + ++ A VF+ + + V W
Sbjct: 257 SIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPW 316
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
M+ + QN +F+ R V P +F +SS+L+ CA LG +H + VK
Sbjct: 317 SFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVK 376
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ +I+V +AL+D+Y KC + A F ++ +N V WN +I GY + G A S
Sbjct: 377 VGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSM 436
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F E ++R + VT L AC+ +++ G+++ + + +K ++D+
Sbjct: 437 FRE--ALRNQVSVTEVTFSSALGACASLASMDLGVQV-HGLAIKTNNAKKVAVSNSLIDM 493
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIA 405
+ G + A + EM ++ W AL++ +G LGR A
Sbjct: 494 YAKCGDIKFAQSVFNEMET-IDVASWNALISGYSTHG---LGRQA 534
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/562 (40%), Positives = 329/562 (58%), Gaps = 8/562 (1%)
Query: 31 QLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90
++H L +G D F+ MYS G D A K+FD+ +R + WNA L G
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157
Query: 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNAC--SDCSL--LQLGRQLHGFLVRSGFDGNV 146
+ + + + R G E D T+ L AC S+C++ L G+++H L R G+ +V
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHV 217
Query: 147 SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206
+ LVD Y + V A VF G+ +N VSW +M+ Y +N + + F RE
Sbjct: 218 YIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRE 277
Query: 207 GVE--PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQ 264
+ P + SVL ACA +A LE G+ +H ++ ++ + V SALV MYG+CG ++
Sbjct: 278 TKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLE 337
Query: 265 DAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324
+ F++M +R++V WN++I Y G+ A+ FEEM + A P VT V VL A
Sbjct: 338 VGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEM--LANGASPTPVTFVSVLGA 395
Query: 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTIS 384
CS G VE+G ++F +M +GIKP EHYAC+VDLLGRA +D A +++++M P
Sbjct: 396 CSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK 455
Query: 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444
VWG+LL +CR++G EL A+ LF L+P ++GN+VLL++++A W+E V+K ++
Sbjct: 456 VWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLE 515
Query: 445 DVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALY 504
G++K G W+ V+ +++ F + D + +I A L KL E+MK GYIP T LY
Sbjct: 516 HRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLY 575
Query: 505 DVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREV 564
++E EEK V HSEK+ALAFGLI G PIRITKNLR+C DCH KFIS + +E+
Sbjct: 576 ELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEI 635
Query: 565 IVRDNNRFHRFWDGYCSCSDYW 586
+VRD NRFHRF +G CSC DYW
Sbjct: 636 LVRDVNRFHRFKNGVCSCGDYW 657
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 6/245 (2%)
Query: 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNI 247
+Q+ +E + + + P ++ C + L VH + + +
Sbjct: 53 IQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDP 112
Query: 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSM 307
F+ + L+ MY GS+ A F+K +R + WNA+ GH + L + +M +
Sbjct: 113 FLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRI 172
Query: 308 RCEA---VPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
E+ YV CV S C+ + KG +I +T + G +VD+ R
Sbjct: 173 GVESDRFTYTYVLKACVASECT-VNHLMKGKEIHAHLT-RRGYSSHVYIMTTLVDMYARF 230
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
G VD A + MP+R +S W A++ GK + + + S N V +
Sbjct: 231 GCVDYASYVFGGMPVRNVVS-WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMV 289
Query: 425 NMFAA 429
++ A
Sbjct: 290 SVLQA 294
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/656 (37%), Positives = 354/656 (53%), Gaps = 74/656 (11%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGK--QLHALALKSGQIHDVFVGCSAFDMYSK- 57
M+ E P++FTF + A AL + Q HA ALKSG + V + +YSK
Sbjct: 139 MKHEGFKPDNFTFASVL-AGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKC 197
Query: 58 ---TGLKDDADKMFDEMPERNLATW--------------------------------NAY 82
L A K+FDE+ E++ +W NA
Sbjct: 198 ASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAM 257
Query: 83 ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGF 142
IS V G + A++ + +G E D T+ + + AC+ LLQLG+Q+H +++R
Sbjct: 258 ISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE- 316
Query: 143 DGNVSVCNGLVDFYGKCNE-------------------------------VGLAKVVFDG 171
D + N LV Y KC + +G AK++F
Sbjct: 317 DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376
Query: 172 IIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG 231
+ +KN +SW M+ +N E G ++F +REG EP D+ S + +CA + G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436
Query: 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
+ HA +K + ++ G+AL+ MY KCG +++A F MP + V WNA+I
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496
Query: 292 GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351
GH A+ +EEM ++ P+ +TL+ VL+ACS AG V++G K F SM Y I PGA
Sbjct: 497 GHGAEAVDVYEEM--LKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGA 554
Query: 352 EHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411
+HYA ++DLL R+G A +I+ +P +PT +W ALL+ CRV+G ELG IAAD LF
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614
Query: 412 LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDT 471
L P G ++LLSNM AATG+WEE VRK M+D G+KK CSWI ++ ++H F DT
Sbjct: 615 LIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674
Query: 472 SHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEE-EKMTEVGHHSEKIALAFGLIA 530
SH + L L +EM+ GY+PDT+F L+DVE + K + HSEKIA+AFGL+
Sbjct: 675 SHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMK 734
Query: 531 IPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+PPG IRI KNLR CGDCH+ F+F+S +V R++I+RD RFH F +G CSC ++W
Sbjct: 735 LPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/419 (25%), Positives = 180/419 (42%), Gaps = 87/419 (20%)
Query: 55 YSKTGLKDDADKMFDEMP--ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLI 112
Y +G A +F++ P R+ +NA I+ +AI+ F ++ G +PD
Sbjct: 90 YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149
Query: 113 TFCAFLNACSDCSLLQLG-RQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE----VGLAKV 167
TF + L + + + Q H ++SG SV N LV Y KC + A+
Sbjct: 150 TFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARK 209
Query: 168 VFDGIIDKNDVSWCSMLVVYVQN----------------------------------YEE 193
VFD I++K++ SW +M+ YV+N Y+E
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE 269
Query: 194 ENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSAL 253
+M G+E +F SV+ ACA L+LG+ VHA ++ + + ++L
Sbjct: 270 --ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR-EDFSFHFDNSL 326
Query: 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP 313
V +Y KCG +A F KMP ++LV WNA++ GY GH A F+EM
Sbjct: 327 VSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKE------K 380
Query: 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP--------------------GAEH 353
N ++ + ++S + G E+G+K+F M + G +P G ++
Sbjct: 381 NILSWMIMISGLAENGFGEEGLKLFSCMK-REGFEPCDYAFSGAIKSCAVLGAYCNGQQY 439
Query: 354 YA---------------CVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYG 397
+A ++ + + G+V+ A ++ + MP ++S W AL+ A +G
Sbjct: 440 HAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS-WNALIAALGQHG 497
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 84/361 (23%)
Query: 109 PDLIT-----FCAFLNACSDC--SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161
PDL+ + A L C + LQL R +HG ++ GF + N L+D Y K +E
Sbjct: 5 PDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSE 64
Query: 162 VGLAKVVFD---------------------------GIIDK------NDVSWCSMLVVYV 188
+ A+ +FD G+ +K + V + +M+ +
Sbjct: 65 LNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFS 124
Query: 189 QNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG-RSVHAVAVKACVEGNI 247
N + + +F + EG +P +F +SVL+ A +A E HA A+K+
Sbjct: 125 HNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYIT 184
Query: 248 FVGSALVDMYGKCGS----IQDAEIAFNKMPERN-------------------------- 277
V +ALV +Y KC S + A F+++ E++
Sbjct: 185 SVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEG 244
Query: 278 ------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331
LV +NA+I GY ++G AL M S E + T V+ AC+ AG +
Sbjct: 245 MDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL--DEFTYPSVIRACATAGLL 302
Query: 332 EKGMKIFYSMTLKYGIKPGAEHY-ACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALL 390
+ G ++ ++ L+ + + H+ +V L + G D A I ++MP + +S W ALL
Sbjct: 303 QLGKQV-HAYVLRR--EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVS-WNALL 358
Query: 391 N 391
+
Sbjct: 359 S 359
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/560 (39%), Positives = 335/560 (59%), Gaps = 10/560 (1%)
Query: 30 KQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLG 89
K + +++ + G I D VGC Y + G A+K+FDEMPER+L +WN+ IS
Sbjct: 56 KVVKSVSYRHGFIGDQLVGC-----YLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGR 110
Query: 90 GRPKNAIDAF--INLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS 147
G + + + G P+ +TF + ++AC + GR +HG +++ G V
Sbjct: 111 GYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVK 170
Query: 148 VCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207
V N +++YGK ++ + +F+ + KN VSW +M+V+++QN E G F +RR G
Sbjct: 171 VVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVG 230
Query: 208 VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267
EP +VL +C + + L + +H + + GN + +AL+D+Y K G ++D+
Sbjct: 231 HEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSS 290
Query: 268 IAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327
F+++ + + W A++ YA G A+ FE M P++VT +L+ACS
Sbjct: 291 TVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGIS--PDHVTFTHLLNACSH 348
Query: 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWG 387
+G VE+G F +M+ +Y I P +HY+C+VDLLGR+GL+ AY +IKEMPM P+ VWG
Sbjct: 349 SGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWG 408
Query: 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447
ALL ACRVY +LG AA+ LF+L+P D N+V+LSN+++A+G W++A +R MK G
Sbjct: 409 ALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKG 468
Query: 448 IKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAA-GYIPDTNFALYDV 506
+ + +GCS+I N+IH F D SH + +IQ L ++R++MK+ GY T F L+DV
Sbjct: 469 LVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDV 528
Query: 507 EEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIV 566
E+ K + HSEKIA+AFGL+ + P PI I KNLRICGDCH K IS I R +I+
Sbjct: 529 GEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIII 588
Query: 567 RDNNRFHRFWDGYCSCSDYW 586
RD+ RFH F DG CSCSDYW
Sbjct: 589 RDSKRFHHFLDGSCSCSDYW 608
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 2/319 (0%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
PN+ TF + A G+ +H L +K G + +V V + + Y KTG + K+
Sbjct: 132 PNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKL 191
Query: 68 FDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127
F+++ +NL +WN I + G + + F RR G EPD TF A L +C D ++
Sbjct: 192 FEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVV 251
Query: 128 QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVY 187
+L + +HG ++ GF GN + L+D Y K + + VF I + ++W +ML Y
Sbjct: 252 RLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAY 311
Query: 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRS-VHAVAVKACVEGN 246
+ + + F G+ P + +L+AC+ +E G+ ++ + ++
Sbjct: 312 ATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPR 371
Query: 247 IFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADMALSSFEEMT 305
+ S +VD+ G+ G +QDA +MP E + W A++G + + E +
Sbjct: 372 LDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLF 431
Query: 306 SMRCEAVPNYVTLVCVLSA 324
+ NYV L + SA
Sbjct: 432 ELEPRDGRNYVMLSNIYSA 450
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 7/196 (3%)
Query: 200 FLTARR-----EGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV 254
FL RR V D +SS+++A +EL R +H VK+ + F+G LV
Sbjct: 14 FLYRRRFLSQSSFVHSLDANVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLV 73
Query: 255 DMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN 314
Y + G AE F++MPER+LV WN++I GY+ +G+ M PN
Sbjct: 74 GCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPN 133
Query: 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374
VT + ++SAC G+ E+G + + + +K+G+ + ++ G+ G + + ++
Sbjct: 134 EVTFLSMISACVYGGSKEEG-RCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLF 192
Query: 375 KEMPMRPTISVWGALL 390
+++ ++ +S W ++
Sbjct: 193 EDLSIKNLVS-WNTMI 207
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 137/317 (43%), Gaps = 10/317 (3%)
Query: 116 AFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDK 175
+ + A C ++L R LH +V+S + + + LV Y + A+ +FD + ++
Sbjct: 36 SLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPER 95
Query: 176 NDVSWCSMLVVYVQNYEEENGCQMF--LTARREGVEPKDFMISSVLSACARIAGLELGRS 233
+ VSW S++ Y ++ + G P + S++SAC E GR
Sbjct: 96 DLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRC 155
Query: 234 VHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGH 293
+H + +K V + V +A ++ YGK G + + F + +NLV WN +I + G
Sbjct: 156 IHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGL 215
Query: 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEH 353
A+ L+ F S R P+ T + VL +C G V I + + + G
Sbjct: 216 AEKGLAYFN--MSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGI-HGLIMFGGFSGNKCI 272
Query: 354 YACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNL-FKL 412
++DL + G ++ + + E+ P W A+L A +G GR A + +
Sbjct: 273 TTALLDLYSKLGRLEDSSTVFHEIT-SPDSMAWTAMLAAYATHG---FGRDAIKHFELMV 328
Query: 413 DPNDSGNHVLLSNMFAA 429
S +HV +++ A
Sbjct: 329 HYGISPDHVTFTHLLNA 345
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Query: 2 RRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLK 61
RR P+ TF + ++ + + + +H L + G + + + D+YSK G
Sbjct: 227 RRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRL 286
Query: 62 DDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC 121
+D+ +F E+ + W A ++ G ++AI F + G PD +TF LNAC
Sbjct: 287 EDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNAC 346
Query: 122 SDCSLLQLGRQ-LHGFLVRSGFDGNVSVCNGLVDFYGK 158
S L++ G+ R D + + +VD G+
Sbjct: 347 SHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/626 (36%), Positives = 351/626 (56%), Gaps = 49/626 (7%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
P++ T + ++L GKQLH A+ S I ++FVG DMY+K G+ D+A+ +
Sbjct: 227 PDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTV 286
Query: 68 FDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRR----------------------- 104
F M +++ +WNA ++ GR ++A+ F ++
Sbjct: 287 FSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLG 346
Query: 105 ------------TGGEPDLITFCAFLNACSDCSLLQLGRQLHGF-------LVRSGFDGN 145
+G +P+ +T + L+ C+ L G+++H + L ++G
Sbjct: 347 YEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDE 406
Query: 146 VSVCNGLVDFYGKCNEVGLAKVVFDGII--DKNDVSWCSMLVVYVQNYEEENGCQMFLTA 203
V N L+D Y KC +V A+ +FD + +++ V+W M+ Y Q+ + ++
Sbjct: 407 NMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM 466
Query: 204 RREGVE--PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYGKC 260
E + P F IS L ACA +A L +G+ +HA A++ +FV + L+DMY KC
Sbjct: 467 FEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKC 526
Query: 261 GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320
GSI DA + F+ M +N V W +++ GY G+ + AL F+EM R + VTL+
Sbjct: 527 GSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR--RIGFKLDGVTLLV 584
Query: 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMR 380
VL ACS +G +++GM+ F M +G+ PG EHYAC+VDLLGRAG ++ A +I+EMPM
Sbjct: 585 VLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPME 644
Query: 381 PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440
P VW A L+ CR++GK ELG AA+ + +L N G++ LLSN++A GRW++ +R
Sbjct: 645 PPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIR 704
Query: 441 KEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTN 500
M+ G+KK GCSW+ F D +H EI +L + +K GY+P+T
Sbjct: 705 SLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETG 764
Query: 501 FALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIV 560
FAL+DV++EEK + HSEK+ALA+G++ P G IRITKNLR+CGDCH+AF ++S I+
Sbjct: 765 FALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRII 824
Query: 561 GREVIVRDNNRFHRFWDGYCSCSDYW 586
++I+RD++RFH F +G CSC YW
Sbjct: 825 DHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 212/457 (46%), Gaps = 52/457 (11%)
Query: 7 SPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADK 66
+P+++TFP +FKA + G+ HAL+L +G I +VFVG + MYS+ DA K
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARK 183
Query: 67 MFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITFCAFLNACSDCS 125
+FDEM ++ +WN+ I + G+PK A++ F + G PD IT L C+
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
LG+QLH F V S N+ V N LVD Y KC + A VF + K+ VSW +M+
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303
Query: 186 VYVQNYEEENGCQMFLTARRE-----------------------------------GVEP 210
Y Q E+ ++F + E G++P
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363
Query: 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVE-------GNIFVGSALVDMYGKCGSI 263
+ + SVLS CA + L G+ +H A+K ++ V + L+DMY KC +
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV 423
Query: 264 QDAEIAFNKMP--ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321
A F+ + ER++V W +IGGY+ G A+ AL EM C+ PN T+ C
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483
Query: 322 LSACSRAGAVEKGMKIF-YSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMR 380
L AC+ A+ G +I Y++ + P C++D+ + G + A + M +
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNMMAK 542
Query: 381 PTISVWGALLNACRVYGKPELGRIAADNL----FKLD 413
++ W +L+ ++G E D + FKLD
Sbjct: 543 NEVT-WTSLMTGYGMHGYGEEALGIFDEMRRIGFKLD 578
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/462 (24%), Positives = 191/462 (41%), Gaps = 50/462 (10%)
Query: 7 SPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADK 66
S + T P + K + + + ++L + + + + + Y G A
Sbjct: 26 SAPEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLTSHLI-----STYISVGCLSHAVS 80
Query: 67 MFDEMPERNLAT--WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124
+ P + WN+ I + G + F + PD TF AC +
Sbjct: 81 LLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEI 140
Query: 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML 184
S ++ G H + +GF NV V N LV Y +C + A+ VFD + + VSW S++
Sbjct: 141 SSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSII 200
Query: 185 VVYVQNYEEENGCQMFLTARRE-GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACV 243
Y + + + +MF E G P + + +VL CA + LG+ +H AV + +
Sbjct: 201 ESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEM 260
Query: 244 EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303
N+FVG+ LVDMY KCG + +A F+ M +++V WNA++ GY+ G + A+ FE+
Sbjct: 261 IQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEK 320
Query: 304 MTSMRC---------------------EAV------------PNYVTLVCVLSACSRAGA 330
M + EA+ PN VTL+ VLS C+ GA
Sbjct: 321 MQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGA 380
Query: 331 VEKGMKIFYSMTLKYGIK-----PGAEHYAC--VVDLLGRAGLVDRAYEIIKEM-PMRPT 382
+ G +I + +KY I G E+ ++D+ + VD A + + P
Sbjct: 381 LMHGKEI-HCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERD 439
Query: 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
+ W ++ +G +F+ D N +S
Sbjct: 440 VVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 22/331 (6%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALAL-------KSGQIHDVFVGCSAFDMYSKT 58
I PN+ T + +++ + GK++H A+ K+G + V DMY+K
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKC 420
Query: 59 GLKDDADKMFDEMP--ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE--PDLITF 114
D A MFD + ER++ TW I G A++ + + P+ T
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480
Query: 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDG-NVSVCNGLVDFYGKCNEVGLAKVVFDGII 173
L AC+ + L++G+Q+H + +R+ + + V N L+D Y KC + A++VFD ++
Sbjct: 481 SCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMM 540
Query: 174 DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG-- 231
KN+V+W S++ Y + E +F RR G + + VL AC+ ++ G
Sbjct: 541 AKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME 600
Query: 232 ---RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGG 287
R V E + LVD+ G+ G + A +MP E V W A +
Sbjct: 601 YFNRMKTVFGVSPGPEHY----ACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656
Query: 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTL 318
G ++ + E++T + +Y L
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLL 687
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/653 (37%), Positives = 359/653 (54%), Gaps = 70/653 (10%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK--- 57
M +E I P FT + + +A TGK++H+ +K G +V V S +MY+K
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196
Query: 58 ----------------------------TGLKDDADKMFDEMPERNLATWNAYISNAVLG 89
G D A F++M ER++ TWN+ IS
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256
Query: 90 GRPKNAIDAFIN-LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV 148
G A+D F LR + PD T + L+AC++ L +G+Q+H +V +GFD + V
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV 316
Query: 149 CNGLVDFYGKC---------------------------------NEVGLAKVVFDGIIDK 175
N L+ Y +C ++ AK +F + D+
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR 376
Query: 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVH 235
+ V+W +M+V Y Q+ +F + G P + ++++LS + +A L G+ +H
Sbjct: 377 DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIH 436
Query: 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHA 294
AVK+ ++ V +AL+ MY K G+I A AF+ + ER+ V W ++I A GHA
Sbjct: 437 GSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496
Query: 295 DMALSSFEEMTSMRCEAV-PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEH 353
+ AL FE +M E + P+++T V V SAC+ AG V +G + F M I P H
Sbjct: 497 EEALELFE---TMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH 553
Query: 354 YACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLD 413
YAC+VDL GRAGL+ A E I++MP+ P + WG+LL+ACRV+ +LG++AA+ L L+
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLE 613
Query: 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSH 473
P +SG + L+N+++A G+WEEA +RK MKD +KK G SWI VK+++H+F +D +H
Sbjct: 614 PENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTH 673
Query: 474 ERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPP 533
EI + K+ +E+K GY+PDT L+D+EEE K + HHSEK+A+AFGLI+ P
Sbjct: 674 PEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPD 733
Query: 534 GVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+RI KNLR+C DCH+A KFIS +VGRE+IVRD RFH F DG+CSC DYW
Sbjct: 734 KTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 201/472 (42%), Gaps = 105/472 (22%)
Query: 28 TGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYIS--- 84
T + +H +KSG + V++ + ++YSKTG A K+FDEMP R +WN +S
Sbjct: 32 TAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYS 91
Query: 85 ------------------------NAVLG----GRPKNAIDAFINLRRTGGEPDLITFCA 116
++G G+ AI ++ + G EP T
Sbjct: 92 KRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTN 151
Query: 117 FLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKN 176
L + + ++ G+++H F+V+ G GNVSV N L++ Y KC + +AK VFD ++ ++
Sbjct: 152 VLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRD 211
Query: 177 DVSWCSMLVVYVQ---------NYEEE----------------------NGCQMFLTARR 205
SW +M+ +++Q +E+ +F R
Sbjct: 212 ISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLR 271
Query: 206 EG-VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQ 264
+ + P F ++SVLSACA + L +G+ +H+ V + + V +AL+ MY +CG ++
Sbjct: 272 DSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVE 331
Query: 265 ---------------------------------DAEIAFNKMPERNLVCWNAIIGGYAHQ 291
A+ F + +R++V W A+I GY
Sbjct: 332 TARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQH 391
Query: 292 GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351
G A++ F M PN TL +LS S ++ G +I S +K G
Sbjct: 392 GSYGEAINLFRSMVG--GGQRPNSYTLAAMLSVASSLASLSHGKQIHGS-AVKSGEIYSV 448
Query: 352 EHYACVVDLLGRAGLV---DRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400
++ + +AG + RA+++I+ R T+S W +++ A +G E
Sbjct: 449 SVSNALITMYAKAGNITSASRAFDLIR--CERDTVS-WTSMIIALAQHGHAE 497
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 210 PKDFMISSVLSACARIAGLELGRS--------VHAVAVKACVEGNIFVGSALVDMYGKCG 261
P +S++L C + + +S VH +K+ + ++++ + L+++Y K G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 262 SIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321
A F++MP R WN ++ Y+ +G D F+++ + V+ +
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQ------RDSVSWTTM 117
Query: 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD---RAYEIIKEMP 378
+ G K +++ M +K GI+P V+ + ++ + + I ++
Sbjct: 118 IVGYKNIGQYHKAIRVMGDM-VKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLG 176
Query: 379 MRPTISVWGALLNACRVYGKPELGRIAADNLFKLD 413
+R +SV +LLN G P + + D + D
Sbjct: 177 LRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRD 211
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/533 (38%), Positives = 328/533 (61%), Gaps = 3/533 (0%)
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRT-GGEPDLIT 113
Y++ GL ++A K+FDEM E++ +W A ++ V +P+ A+ + ++R P++ T
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220
Query: 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173
+ A + ++ G+++HG +VR+G D + + + L+D YGKC + A+ +FD I+
Sbjct: 221 VSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIV 280
Query: 174 DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRS 233
+K+ VSW SM+ Y ++ G +F P ++ + VL+ACA + ELG+
Sbjct: 281 EKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQ 340
Query: 234 VHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGH 293
VH + + F S+LVDMY KCG+I+ A+ + P+ +LV W ++IGG A G
Sbjct: 341 VHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQ 400
Query: 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEH 353
D AL F+ + ++ P++VT V VLSAC+ AG VEKG++ FYS+T K+ + ++H
Sbjct: 401 PDEALKYFDLL--LKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDH 458
Query: 354 YACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLD 413
Y C+VDLL R+G ++ +I EMPM+P+ +W ++L C YG +L AA LFK++
Sbjct: 459 YTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIE 518
Query: 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSH 473
P + +V ++N++AA G+WEE +RK M+++G+ K G SW +K + H+F A DTSH
Sbjct: 519 PENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSH 578
Query: 474 ERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPP 533
+I L +LR++MK GY+P T+ L+DVE+E+K + +HSEK+A+AF +++
Sbjct: 579 PMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEE 638
Query: 534 GVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
G I++ KNLR C DCH A KFIS I R++ VRD+ RFH F +G CSC DYW
Sbjct: 639 GTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 162/334 (48%), Gaps = 5/334 (1%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
PN FT A++A+ GK++H +++G D + S DMY K G D+A +
Sbjct: 216 PNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNI 275
Query: 68 FDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127
FD++ E+++ +W + I R + F L + P+ TF LNAC+D +
Sbjct: 276 FDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTE 335
Query: 128 QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVY 187
+LG+Q+HG++ R GFD + LVD Y KC + AK V DG + VSW S++
Sbjct: 336 ELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGC 395
Query: 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRS-VHAVAVKACVEGN 246
QN + + + F + G +P +VLSAC +E G +++ K +
Sbjct: 396 AQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHT 455
Query: 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPER-NLVCWNAIIGGYAHQGHADMALSSFEEMT 305
+ LVD+ + G + + ++MP + + W +++GG + G+ D+A + +E+
Sbjct: 456 SDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELF 515
Query: 306 SMRCEAVPNYVTLVCVLSACSR---AGAVEKGMK 336
+ E YVT+ + +A + G + K M+
Sbjct: 516 KIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQ 549
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 38/362 (10%)
Query: 100 INLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC 159
+ L +P T+C + CS L+ G+++H + SGF + + N L+ Y KC
Sbjct: 74 VQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKC 133
Query: 160 N----------------------------EVGL---AKVVFDGIIDKNDVSWCSMLVVYV 188
EVGL A+ +FD + +K+ SW +M+ YV
Sbjct: 134 GSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYV 193
Query: 189 QNYEEENGCQMF-LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNI 247
+ + E ++ L R P F +S ++A A + + G+ +H V+A ++ +
Sbjct: 194 KKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDE 253
Query: 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSM 307
+ S+L+DMYGKCG I +A F+K+ E+++V W ++I Y S F E+
Sbjct: 254 VLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVG- 312
Query: 308 RCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367
CE PN T VL+AC+ E G ++ MT + G P + + +VD+ + G +
Sbjct: 313 SCER-PNEYTFAGVLNACADLTTEELGKQVHGYMT-RVGFDPYSFASSSLVDMYTKCGNI 370
Query: 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427
+ A ++ P +P + W +L+ C G+P+ D L K +HV N+
Sbjct: 371 ESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEALKYFDLLLK--SGTKPDHVTFVNVL 427
Query: 428 AA 429
+A
Sbjct: 428 SA 429
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 5 CISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDA 64
C PN++TF + A + L GKQ+H + G F S DMY+K G + A
Sbjct: 314 CERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESA 373
Query: 65 DKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124
+ D P+ +L +W + I G+P A+ F L ++G +PD +TF L+AC+
Sbjct: 374 KHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHA 433
Query: 125 SLLQLGRQL 133
L++ G +
Sbjct: 434 GLVEKGLEF 442
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/561 (39%), Positives = 332/561 (59%), Gaps = 6/561 (1%)
Query: 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVL 88
G +H+ ++K G ++FV D+Y++ G D K+FD M R+L +WN+ I L
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYEL 325
Query: 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG-FDGNVS 147
+P AI F +R + +PD +T + + S ++ R + GF +R G F +++
Sbjct: 326 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDIT 385
Query: 148 VCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207
+ N +V Y K V A+ VF+ + + + +SW +++ Y QN +M+ EG
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEG 445
Query: 208 -VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266
+ SVL AC++ L G +H +K + ++FV ++L DMYGKCG ++DA
Sbjct: 446 EIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDA 505
Query: 267 EIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV-PNYVTLVCVLSAC 325
F ++P N V WN +I + GH + A+ F+EM E V P+++T V +LSAC
Sbjct: 506 LSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD---EGVKPDHITFVTLLSAC 562
Query: 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISV 385
S +G V++G F M YGI P +HY C+VD+ GRAG ++ A + IK M ++P S+
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622
Query: 386 WGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445
WGALL+ACRV+G +LG+IA+++LF+++P G HVLLSNM+A+ G+WE D +R
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682
Query: 446 VGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYD 505
G++K G S + V N++ +F + +H E+ LT L+ ++K GY+PD F L D
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742
Query: 506 VEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVI 565
VE++EK + HSE++A+AF LIA P IRI KNLR+CGDCHS KFIS I RE+I
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802
Query: 566 VRDNNRFHRFWDGYCSCSDYW 586
VRD+NRFH F +G CSC DYW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 207/427 (48%), Gaps = 17/427 (3%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
++P+ TFP + KA + + G ++H LALK G + DV+V S +YS+ +A
Sbjct: 149 LTPDYRTFPSVLKACRTV---IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNAR 205
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+FDEMP R++ +WNA IS G K A+ LR D +T + L+AC++
Sbjct: 206 ILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAG 261
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
G +H + ++ G + + V N L+D Y + + + VFD + ++ +SW S++
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIK 321
Query: 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAV-KACVE 244
Y N + +F R ++P + S+ S +++ + RSV + K
Sbjct: 322 AYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFL 381
Query: 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEM 304
+I +G+A+V MY K G + A FN +P +++ WN II GYA G A A+ + M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 441
Query: 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
E N T V VL ACS+AGA+ +GMK+ + LK G+ + D+ G+
Sbjct: 442 EE-EGEIAANQGTWVSVLPACSQAGALRQGMKL-HGRLLKNGLYLDVFVVTSLADMYGKC 499
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK--LDPNDSGNHVL 422
G ++ A + ++P ++ W L+ +G E A LFK LD +H+
Sbjct: 500 GRLEDALSLFYQIPRVNSVP-WNTLIACHGFHGHGE----KAVMLFKEMLDEGVKPDHIT 554
Query: 423 LSNMFAA 429
+ +A
Sbjct: 555 FVTLLSA 561
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 180/383 (46%), Gaps = 26/383 (6%)
Query: 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERN 75
LF+ + L + K LHA + S QI +V + ++Y G A FD + R+
Sbjct: 60 LFRYCTNLQ---SAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRD 116
Query: 76 LATWNAYISNAVLGGRPKNAIDAF-INLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLH 134
+ WN IS G I F + + +G PD TF + L AC + G ++H
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT---VIDGNKIH 173
Query: 135 GFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEE 194
++ GF +V V L+ Y + VG A+++FD + ++ SW +M+ Y Q+ +
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAK 233
Query: 195 NGCQMFLTARREGVEPKD-FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSAL 253
+ G+ D + S+LSAC G ++H+ ++K +E +FV + L
Sbjct: 234 EALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKL 288
Query: 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP 313
+D+Y + G ++D + F++M R+L+ WN+II Y A+S F+EM R + P
Sbjct: 289 IDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQ--P 346
Query: 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG-----IKPGAEHYACVVDLLGRAGLVD 368
+ +TL+ + S S+ G + + + TL+ G I G VV + + GLVD
Sbjct: 347 DCLTLISLASILSQLGDI-RACRSVQGFTLRKGWFLEDITIG----NAVVVMYAKLGLVD 401
Query: 369 RAYEIIKEMPMRPTISVWGALLN 391
A + +P IS W +++
Sbjct: 402 SARAVFNWLPNTDVIS-WNTIIS 423
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 16/279 (5%)
Query: 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSM 183
C+ LQ + LH LV S NV + LV+ Y V LA+ FD I +++ +W M
Sbjct: 64 CTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLM 123
Query: 184 LVVYVQ--NYEEENGC-QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+ Y + N E C +F+ + G+ P SVL AC + G +H +A+K
Sbjct: 124 ISGYGRAGNSSEVIRCFSLFMLS--SGLTPDYRTFPSVLKACRTVID---GNKIHCLALK 178
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+++V ++L+ +Y + ++ +A I F++MP R++ WNA+I GY G+A AL+
Sbjct: 179 FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL 238
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
+ +M + VT+V +LSAC+ AG +G+ I +S ++K+G++ ++DL
Sbjct: 239 SNGLRAM------DSVTVVSLLSACTEAGDFNRGVTI-HSYSIKHGLESELFVSNKLIDL 291
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKP 399
G + ++ M +R IS W +++ A + +P
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLIS-WNSIIKAYELNEQP 329
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
I+ N T+ + A S G +LH LK+G DVFV S DMY K G +DA
Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDAL 506
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+F ++P N WN I+ G + A+ F + G +PD ITF L+ACS
Sbjct: 507 SLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566
Query: 126 LLQLGRQLHGFL-VRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS-WCSM 183
L+ G+ + G ++ +VD YG+ ++ A + + D S W ++
Sbjct: 567 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 626
Query: 184 L 184
L
Sbjct: 627 L 627
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 205 REGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQ 264
+ G E K+ I V + L+ + +HA V + N+ + + LV++Y G++
Sbjct: 46 KNGNESKE--IDDVHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVA 103
Query: 265 DAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324
A F+ + R++ WN +I GY G++ + F + + P+Y T VL A
Sbjct: 104 LARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCF-SLFMLSSGLTPDYRTFPSVLKA 162
Query: 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTIS 384
C V G KI + + LK+G A ++ L R V A + EMP+R S
Sbjct: 163 CR---TVIDGNKI-HCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS 218
Query: 385 VWGALLN 391
W A+++
Sbjct: 219 -WNAMIS 224
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/616 (37%), Positives = 336/616 (54%), Gaps = 32/616 (5%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR + T + K SS+ GKQ+H +K G + VG MY+ G
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC 189
Query: 61 KDDADKMFDEMPERNLA------------------------------TWNAYISNAVLGG 90
DA K+F + +RN +W A I G
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNG 249
Query: 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150
K AI+ F ++ G + D F + L AC + G+Q+H ++R+ F ++ V +
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309
Query: 151 GLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEP 210
L+D Y KC + AK VFD + KN VSW +M+V Y Q E ++FL +R G++P
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDP 369
Query: 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAF 270
+ + +SACA ++ LE G H A+ + + + V ++LV +YGKCG I D+ F
Sbjct: 370 DHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLF 429
Query: 271 NKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA 330
N+M R+ V W A++ YA G A + F++M + P+ VTL V+SACSRAG
Sbjct: 430 NEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLK--PDGVTLTGVISACSRAGL 487
Query: 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALL 390
VEKG + F MT +YGI P HY+C++DL R+G ++ A I MP P W LL
Sbjct: 488 VEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLL 547
Query: 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450
+ACR G E+G+ AA++L +LDP+ + LLS+++A+ G+W+ +R+ M++ +KK
Sbjct: 548 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKK 607
Query: 451 GAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEE 510
G SWI K ++H F A D S +I A L +L ++ GY PDT+F +DVEE
Sbjct: 608 EPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAV 667
Query: 511 KMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNN 570
K+ + +HSE++A+AFGLI +P G PIR+ KNLR+C DCH+A K IS + GRE++VRD
Sbjct: 668 KVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAV 727
Query: 571 RFHRFWDGYCSCSDYW 586
RFHRF DG CSC D+W
Sbjct: 728 RFHRFKDGTCSCGDFW 743
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 181/379 (47%), Gaps = 43/379 (11%)
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRT-GGEPDLIT 113
YSK GL + + F+++P+R+ TWN I L G A+ A+ + R +T
Sbjct: 82 YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173
L S + LG+Q+HG +++ GF+ + V + L+ Y + AK VF G+
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201
Query: 174 DKN------------------------------DVSWCSMLVVYVQNYEEENGCQMFLTA 203
D+N VSW +M+ QN + + F
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREM 261
Query: 204 RREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263
+ +G++ + SVL AC + + G+ +HA ++ + +I+VGSAL+DMY KC +
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 264 QDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323
A+ F++M ++N+V W A++ GY G A+ A+ F +M R P++ TL +S
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM--QRSGIDPDHYTLGQAIS 379
Query: 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV----VDLLGRAGLVDRAYEIIKEMPM 379
AC+ ++E+G + F+ I G HY V V L G+ G +D + + EM +
Sbjct: 380 ACANVSSLEEGSQ-FHGK----AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV 434
Query: 380 RPTISVWGALLNACRVYGK 398
R +S W A+++A +G+
Sbjct: 435 RDAVS-WTAMVSAYAQFGR 452
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 130/313 (41%), Gaps = 25/313 (7%)
Query: 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204
N+ N L+ Y K + + F+ + D++ V+W ++ Y + + + T
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 205 RE-GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263
R+ + ++L + + LG+ +H +K E + VGS L+ MY G I
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
Query: 264 QDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323
DA+ F + +RN V +N+++GG G + AL F M + V+ ++
Sbjct: 191 SDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEK-------DSVSWAAMIK 243
Query: 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEI---IKEMPMR 380
++ G ++ ++ F M ++ G+K + V+ G G ++ +I I +
Sbjct: 244 GLAQNGLAKEAIECFREMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ 302
Query: 381 PTISVWGALLN-----ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435
I V AL++ C Y K R+ N+ G + TGR EE
Sbjct: 303 DHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVG--------YGQTGRAEE 354
Query: 436 ADLVRKEMKDVGI 448
A + +M+ GI
Sbjct: 355 AVKIFLDMQRSGI 367
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 44/252 (17%)
Query: 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
+ +H ++A F+ + +V Y S A F+++P+ NL WN ++ Y+
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 292 GHADMALSSFEE-----------------MTSMRCEAVPNY-------------VTLVCV 321
G S+FE+ ++ + AV Y VTL+ +
Sbjct: 86 GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145
Query: 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV----VDLLGRAGLVDRAYEIIKEM 377
L S G V G +I + IK G E Y V + + G + A ++ +
Sbjct: 146 LKLSSSNGHVSLGKQIHGQV-----IKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGL 200
Query: 378 PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEAD 437
R T+ ++ +L+ G E A LF+ DS + + A G +EA
Sbjct: 201 DDRNTV-MYNSLMGGLLACGMIE----DALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAI 255
Query: 438 LVRKEMKDVGIK 449
+EMK G+K
Sbjct: 256 ECFREMKVQGLK 267
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/591 (39%), Positives = 349/591 (59%), Gaps = 15/591 (2%)
Query: 6 ISPNDFTFPC--------LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK 57
++ + F PC L +S+ + G QLH +KSG V + + YSK
Sbjct: 3 LNSSAFFVPCHNYNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSK 62
Query: 58 TGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAF 117
+ L D+ + F++ P+++ TW++ IS P +++ + PD +
Sbjct: 63 SQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSA 122
Query: 118 LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKND 177
+C+ S +GR +H +++G+D +V V + LVD Y KC E+ A+ +FD + +N
Sbjct: 123 TKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNV 182
Query: 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237
V+W M+ Y Q E E +F A E + D+ SSV+S CA LELGR +H +
Sbjct: 183 VTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGL 242
Query: 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297
++K+ + + FVGS+LV +Y KCG + A FN++P +NL WNA++ YA H
Sbjct: 243 SIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKV 302
Query: 298 LSSFEEM--TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355
+ F+ M + M+ PN++T + VL+ACS AG V++G F M + I+P +HYA
Sbjct: 303 IELFKRMKLSGMK----PNFITFLNVLNACSHAGLVDEGRYYFDQMK-ESRIEPTDKHYA 357
Query: 356 CVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415
+VD+LGRAG + A E+I MP+ PT SVWGALL +C V+ EL AAD +F+L P
Sbjct: 358 SLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPV 417
Query: 416 DSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHER 475
SG H+ LSN +AA GR+E+A RK ++D G KK G SW+ +N++H F A + HE+
Sbjct: 418 SSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEK 477
Query: 476 NTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGV 535
+ EI L +L EEM+ AGYI DT++ L +V+ +EK + +HSE++A+AFGLI P
Sbjct: 478 SKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADR 537
Query: 536 PIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
PIR+ KNLR+CGDCH+A KF+S R +IVRDNNRFHRF DG CSC+DYW
Sbjct: 538 PIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 1/183 (0%)
Query: 4 ECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDD 63
E ++ ND++F + + + G+Q+H L++KS FVG S +YSK G+ +
Sbjct: 211 ENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEG 270
Query: 64 ADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD 123
A ++F+E+P +NL WNA + + I+ F ++ +G +P+ ITF LNACS
Sbjct: 271 AYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSH 330
Query: 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLA-KVVFDGIIDKNDVSWCS 182
L+ GR + S + LVD G+ + A +V+ + ID + W +
Sbjct: 331 AGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGA 390
Query: 183 MLV 185
+L
Sbjct: 391 LLT 393
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/622 (37%), Positives = 339/622 (54%), Gaps = 38/622 (6%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK--- 57
MR P+ FP + K+ + + G+ +H ++ G D++ G + +MY+K
Sbjct: 96 MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLG 155
Query: 58 TGLKDDADKMFDEMPER---------------------------------NLATWNAYIS 84
G K +FDEMP+R ++ ++N I+
Sbjct: 156 MGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIA 215
Query: 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDG 144
G ++A+ + T +PD T + L S+ + G+++HG+++R G D
Sbjct: 216 GYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS 275
Query: 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204
+V + + LVD Y K + ++ VF + ++ +SW S++ YVQN ++F
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV 335
Query: 205 REGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQ 264
V+P SSV+ ACA +A L LG+ +H ++ NIF+ SALVDMY KCG+I+
Sbjct: 336 TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIK 395
Query: 265 DAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324
A F++M + V W AII G+A GH A+S FEEM R PN V V VL+A
Sbjct: 396 AARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK--RQGVKPNQVAFVAVLTA 453
Query: 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTIS 384
CS G V++ F SMT YG+ EHYA V DLLGRAG ++ AY I +M + PT S
Sbjct: 454 CSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGS 513
Query: 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444
VW LL++C V+ EL A+ +F +D + G +VL+ NM+A+ GRW+E +R M+
Sbjct: 514 VWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMR 573
Query: 445 DVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALY 504
G++K CSWI +KN+ H F + D SH +I L + E+M+ GY+ DT+ L+
Sbjct: 574 KKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLH 633
Query: 505 DVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREV 564
DV+EE K + HSE++A+AFG+I PG IR+TKN+RIC DCH A KFIS I RE+
Sbjct: 634 DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREI 693
Query: 565 IVRDNNRFHRFWDGYCSCSDYW 586
IVRDN+RFH F G CSC DYW
Sbjct: 694 IVRDNSRFHHFNRGNCSCGDYW 715
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/428 (22%), Positives = 187/428 (43%), Gaps = 41/428 (9%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+S + L K + + KQLHA +++ + +Y+ L +A
Sbjct: 1 MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEAL 59
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+F + + W + I A+ +F+ +R +G PD F + L +C+
Sbjct: 60 LLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMM 119
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC----NEVGLAKV-------------- 167
L+ G +HGF+VR G D ++ N L++ Y K +++ + V
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDE 179
Query: 168 ------------------VFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE 209
VF+ + K+ VS+ +++ Y Q+ E+ +M ++
Sbjct: 180 DVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLK 239
Query: 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIA 269
P F +SSVL + + G+ +H ++ ++ ++++GS+LVDMY K I+D+E
Sbjct: 240 PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV 299
Query: 270 FNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG 329
F+++ R+ + WN+++ GY G + AL F +M + + + P V V+ AC+
Sbjct: 300 FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK--PGAVAFSSVIPACAHLA 357
Query: 330 AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGAL 389
+ G K + L+ G + +VD+ + G + A +I M + +S W A+
Sbjct: 358 TLHLG-KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAI 415
Query: 390 LNACRVYG 397
+ ++G
Sbjct: 416 IMGHALHG 423
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/612 (37%), Positives = 340/612 (55%), Gaps = 35/612 (5%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDA--- 64
PN +TFP + K+ + G+Q+H LK G D++V S MY + G +DA
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191
Query: 65 ----------------------------DKMFDEMPERNLATWNAYISNAVLGGRPKNAI 96
K+FDE+P +++ +WNA IS G K A+
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 97 DAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFY 156
+ F ++ +T PD T ++AC+ ++LGRQ+H ++ GF N+ + N L+D Y
Sbjct: 252 ELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLY 311
Query: 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS 216
KC E+ A +F+ + K+ +SW +++ Y + +F R G P D +
Sbjct: 312 SKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTML 371
Query: 217 SVLSACARIAGLELGRSVHAVAVKAC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274
S+L ACA + +++GR +H K V + ++L+DMY KCG I+ A FN +
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431
Query: 275 ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334
++L WNA+I G+A G AD + F M + + P+ +T V +LSACS +G ++ G
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ--PDDITFVGLLSACSHSGMLDLG 489
Query: 335 MKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACR 394
IF +MT Y + P EHY C++DLLG +GL A E+I M M P +W +LL AC+
Sbjct: 490 RHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACK 549
Query: 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGC 454
++G ELG A+NL K++P + G++VLLSN++A+ GRW E R + D G+KK GC
Sbjct: 550 MHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGC 609
Query: 455 SWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTE 514
S I + + +H F D H RN EI ML ++ ++ AG++PDT+ L ++EEE K
Sbjct: 610 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGA 669
Query: 515 VGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHR 574
+ HHSEK+A+AFGLI+ PG + I KNLR+C +CH A K IS I RE+I RD RFH
Sbjct: 670 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 729
Query: 575 FWDGYCSCSDYW 586
F DG CSC+DYW
Sbjct: 730 FRDGVCSCNDYW 741
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 178/370 (48%), Gaps = 37/370 (10%)
Query: 64 ADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD 123
A +F + E NL WN L P +A+ ++ + G P+ TF L +C+
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFY---GKCNE------------------- 161
+ G+Q+HG +++ G D ++ V L+ Y G+ +
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 162 ---------VGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD 212
+ A+ +FD I K+ VSW +M+ Y + + ++F + V P +
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNK 272
+ +V+SACA+ +ELGR VH N+ + +AL+D+Y KCG ++ A F +
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326
Query: 273 MPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE 332
+P ++++ WN +IGGY H AL F+EM +R PN VT++ +L AC+ GA++
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEM--LRSGETPNDVTMLSILPACAHLGAID 384
Query: 333 KG--MKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALL 390
G + ++ LK G+ + ++D+ + G ++ A+++ + + ++S W A++
Sbjct: 385 IGRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMI 442
Query: 391 NACRVYGKPE 400
++G+ +
Sbjct: 443 FGFAMHGRAD 452
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 140/305 (45%), Gaps = 34/305 (11%)
Query: 118 LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDF---YGKCNEVGLAKVVFDGIID 174
L+ +C LQ R +H +++ G + L++F + A VF I +
Sbjct: 37 LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96
Query: 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSV 234
N + W +M + + + + ++++ G+ P + VL +CA+ + G+ +
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 235 HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHA 294
H +K + +++V ++L+ MY + G ++DA F+K P R++V + A+I GYA +G+
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216
Query: 295 DMALSSFEEMT-----------------------------SMRCEAVPNYVTLVCVLSAC 325
+ A F+E+ M+ P+ T+V V+SAC
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSAC 276
Query: 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISV 385
+++G++E G ++ + +G + ++DL + G ++ A + + +P + IS
Sbjct: 277 AQSGSIELGRQVHLWID-DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS- 334
Query: 386 WGALL 390
W L+
Sbjct: 335 WNTLI 339
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/590 (40%), Positives = 342/590 (57%), Gaps = 19/590 (3%)
Query: 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK---TGLKDDAD 65
+ FT +F A + L GKQLH+ A++SG + DV CS DMY+K G DD
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCR 325
Query: 66 KMFDEMPERNLATWNAYISNAVLG-GRPKNAIDAFINLRRTGG-EPDLITFCAFLNACSD 123
K+FD M + ++ +W A I+ + AI+ F + G EP+ TF + AC +
Sbjct: 326 KVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385
Query: 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSM 183
S ++G+Q+ G + G N SV N ++ + K + + A+ F+ + +KN VS+ +
Sbjct: 386 LSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTF 445
Query: 184 LVVYVQNYEEENGCQMF--LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241
L +N E ++ +T R GV F +S+LS A + + G +H+ VK
Sbjct: 446 LDGTCRNLNFEQAFKLLSEITERELGVSA--FTFASLLSGVANVGSIRKGEQIHSQVVKL 503
Query: 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSF 301
+ N V +AL+ MY KCGSI A FN M RN++ W ++I G+A G A L +F
Sbjct: 504 GLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETF 563
Query: 302 EEMTSMRCEAV-PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
+M E V PN VT V +LSACS G V +G + F SM + IKP EHYAC+VDL
Sbjct: 564 NQMIE---EGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDL 620
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
L RAGL+ A+E I MP + + VW L ACRV+ ELG++AA + +LDPN+ +
Sbjct: 621 LCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAY 680
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
+ LSN++A G+WEE+ +R++MK+ + K GCSWI V ++IH F DT+H +I
Sbjct: 681 IQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIY 740
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTE----VGHHSEKIALAFGLIAIPPGVP 536
L +L E+K GY+PDT+ L+ +EEE E + HSEKIA+AFGLI+ P
Sbjct: 741 DELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRP 800
Query: 537 IRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+R+ KNLR+CGDCH+A K+IS + GRE+++RD NRFH F DG CSC+DYW
Sbjct: 801 VRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 193/397 (48%), Gaps = 13/397 (3%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIH-DVFVGCSAFDMYSK-TGLKDDAD 65
PND+ + + +A S G+ +K+G DV VGCS DM+ K ++A
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
K+FD+M E N+ TW I+ + G P+ AI F+++ +G E D T + +AC++
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLA---KVVFDGIIDKNDVSWCS 182
L LG+QLH + +RSG +V LVD Y KC+ G + VFD + D + +SW +
Sbjct: 284 NLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341
Query: 183 MLVVYVQNYE-EENGCQMFLTARREG-VEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
++ Y++N +F +G VEP F SS AC ++ +G+ V A K
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK 401
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ N V ++++ M+ K ++DA+ AF + E+NLV +N + G + + A
Sbjct: 402 RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
E+T E + T +LS + G++ KG +I +S +K G+ ++ +
Sbjct: 462 LSEITER--ELGVSAFTFASLLSGVANVGSIRKGEQI-HSQVVKLGLSCNQPVCNALISM 518
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYG 397
+ G +D A + M R IS W +++ +G
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVIS-WTSMITGFAKHG 554
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 190/404 (47%), Gaps = 14/404 (3%)
Query: 1 MRRECISPND-FTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTG 59
M R+ I P D TF L K+ GK +HA ++ D + S +YSK+G
Sbjct: 52 MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111
Query: 60 LKDDADKMFDEMP---ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA 116
A+ +F+ M +R++ +W+A ++ GR +AI F+ G P+ + A
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171
Query: 117 FLNACSDCSLLQLGRQLHGFLVRSG-FDGNVSVCNGLVDFYGKC-NEVGLAKVVFDGIID 174
+ ACS+ + +GR GFL+++G F+ +V V L+D + K N A VFD + +
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231
Query: 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSV 234
N V+W M+ +Q + FL G E F +SSV SACA + L LG+ +
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Query: 235 HAVAVKACVEGNIFVGSALVDMYGKC---GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
H+ A+++ + + V +LVDMY KC GS+ D F++M + +++ W A+I GY
Sbjct: 292 HSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349
Query: 292 GH-ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG 350
+ A A++ F EM + + PN+ T AC G ++ K G+
Sbjct: 350 CNLATEAINLFSEMIT-QGHVEPNHFTFSSAFKACGNLSDPRVGKQVL-GQAFKRGLASN 407
Query: 351 AEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACR 394
+ V+ + ++ ++ A + + + +S L CR
Sbjct: 408 SSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 166/368 (45%), Gaps = 5/368 (1%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+ PN FTF FKA L P GKQ+ A K G + V S M+ K+ +DA
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQ 428
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+ F+ + E+NL ++N ++ + A + TF + L+ ++
Sbjct: 429 RAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVG 488
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
++ G Q+H +V+ G N VCN L+ Y KC + A VF+ + ++N +SW SM+
Sbjct: 489 SIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMIT 548
Query: 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG-RSVHAVAVKACVE 244
+ ++ + F EGV+P + ++LSAC+ + + G R +++ ++
Sbjct: 549 GFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIK 608
Query: 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADMALSSFEE 303
+ + +VD+ + G + DA N MP + +++ W +G + ++ + +
Sbjct: 609 PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARK 668
Query: 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363
+ + Y+ L + AC AG E+ ++ M + +K G + V D + +
Sbjct: 669 ILELDPNEPAAYIQLSNIY-AC--AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHK 725
Query: 364 AGLVDRAY 371
+ D A+
Sbjct: 726 FYVGDTAH 733
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/582 (38%), Positives = 321/582 (55%), Gaps = 5/582 (0%)
Query: 5 CISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDA 64
C + T + A + L G Q+H+LA K+G +V +YSK G
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMG 275
Query: 65 DKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124
+F E + ++ +NA I G + ++ F L +G T + +
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGH- 334
Query: 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML 184
L L +HG+ ++S F + SV L Y K NE+ A+ +FD +K+ SW +M+
Sbjct: 335 --LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMI 392
Query: 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244
Y QN E+ +F ++ P I+ +LSACA++ L LG+ VH + E
Sbjct: 393 SGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE 452
Query: 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEM 304
+I+V +AL+ MY KCGSI +A F+ M ++N V WN +I GY G AL+ F EM
Sbjct: 453 SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM 512
Query: 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
+ P VT +CVL ACS AG V++G +IF SM +YG +P +HYAC+VD+LGRA
Sbjct: 513 --LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRA 570
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
G + RA + I+ M + P SVW LL ACR++ L R ++ LF+LDP++ G HVLLS
Sbjct: 571 GHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLS 630
Query: 425 NMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLT 484
N+ +A + +A VR+ K + K G + I + H+F + D SH + EI L
Sbjct: 631 NIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLE 690
Query: 485 KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLR 544
KL +M+ AGY P+T AL+DVEEEE+ V HSE++A+AFGLIA PG IRI KNLR
Sbjct: 691 KLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLR 750
Query: 545 ICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
+C DCH+ K IS I R ++VRD NRFH F DG CSC DYW
Sbjct: 751 VCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 180/395 (45%), Gaps = 10/395 (2%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+ PN T+ A+S G+ +H A+ G ++ +G + MY K +DA
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDAR 174
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINL-RRTGGEPDLITFCAFLNACSDC 124
K+FD MPE++ WN IS +I F +L + D T L A ++
Sbjct: 175 KVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAEL 234
Query: 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML 184
L+LG Q+H ++G + V G + Y KC ++ + +F + V++ +M+
Sbjct: 235 QELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMI 294
Query: 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG-LELGRSVHAVAVKACV 243
Y N E E +F G + SS L + ++G L L ++H +K+
Sbjct: 295 HGYTSNGETELSLSLFKELMLSGARLR----SSTLVSLVPVSGHLMLIYAIHGYCLKSNF 350
Query: 244 EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303
+ V +AL +Y K I+ A F++ PE++L WNA+I GY G + A+S F E
Sbjct: 351 LSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410
Query: 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363
M + E PN VT+ C+LSAC++ GA+ G K + + + ++ + +
Sbjct: 411 M--QKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAK 467
Query: 364 AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGK 398
G + A + M + ++ W +++ ++G+
Sbjct: 468 CGSIAEARRLFDLMTKKNEVT-WNTMISGYGLHGQ 501
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 202/479 (42%), Gaps = 54/479 (11%)
Query: 6 ISPNDFTFPCLFKASSAL-HIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDA 64
IS N T+ FK S+++ H+ Q HA + G +D+ + S G A
Sbjct: 18 ISKN--TYLDFFKRSTSISHLA----QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYA 71
Query: 65 DKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRR-TGGEPDLITFCAFLNACSD 123
+F + ++ +N + + P +++ F +LR+ T +P+ T+ ++A S
Sbjct: 72 RDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASG 131
Query: 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSM 183
+ GR +HG V G D + + + +V Y K V A+ VFD + +K+ + W +M
Sbjct: 132 FRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTM 191
Query: 184 LVVYVQNYEEENGCQMFLTARREGVEPKDFM-ISSVLSACARIAGLELGRSVHAVAVKAC 242
+ Y +N Q+F E D + +L A A + L LG +H++A K
Sbjct: 192 ISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG 251
Query: 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFE 302
+ +V + + +Y KCG I+ F + + ++V +NA+I GY G +++LS F+
Sbjct: 252 CYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 303 EM--------TSMRCEAVP------------------NYVTLVCVLSAC----SRAGAVE 332
E+ +S VP N+++ V +A S+ +E
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIE 371
Query: 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP---MRPTISVWGAL 389
K+F K + ++ + GL + A + +EM P +
Sbjct: 372 SARKLFDESPEK-----SLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426
Query: 390 LNACRVYGKPELGRIAADNLFKLDPNDSGNHV--LLSNMFAATGRWEEA----DLVRKE 442
L+AC G LG+ D L + +S +V L M+A G EA DL+ K+
Sbjct: 427 LSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 2/186 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M++ SPN T C+ A + L GK +H L + ++V + MY+K G
Sbjct: 411 MQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGS 470
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+A ++FD M ++N TWN IS L G+ + A++ F + +G P +TF L A
Sbjct: 471 IAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYA 530
Query: 121 CSDCSLLQLGRQLHGFLV-RSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI-IDKNDV 178
CS L++ G ++ ++ R GF+ +V +VD G+ + A + + I+
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSS 590
Query: 179 SWCSML 184
W ++L
Sbjct: 591 VWETLL 596
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/612 (36%), Positives = 343/612 (56%), Gaps = 35/612 (5%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
PN +TFP L KA++ + G+ LH +A+KS DVFV S Y G D A K+
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188
Query: 68 FDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127
F + E+++ +WN+ I+ V G P A++ F + + +T L+AC+ L
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248
Query: 128 QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVY 187
+ GRQ+ ++ + + N+++ N ++D Y KC + AK +FD + +K++V+W +ML Y
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 308
Query: 188 V--QNYEEEN------------GCQMFLTARREGVEPKDFMIS----------------- 216
++YE ++A + +P + +I
Sbjct: 309 AISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITL 368
Query: 217 -SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE 275
S LSACA++ LELGR +H+ K + N V SAL+ MY KCG ++ + FN + +
Sbjct: 369 VSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK 428
Query: 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGM 335
R++ W+A+IGG A G + A+ F +M + PN VT V ACS G V++
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK--PNGVTFTNVFCACSHTGLVDEAE 486
Query: 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRV 395
+F+ M YGI P +HYAC+VD+LGR+G +++A + I+ MP+ P+ SVWGALL AC++
Sbjct: 487 SLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKI 546
Query: 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCS 455
+ L +A L +L+P + G HVLLSN++A G+WE +RK M+ G+KK GCS
Sbjct: 547 HANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCS 606
Query: 456 WISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEE-KMTE 514
I + IH F + D +H + ++ L ++ E++K+ GY P+ + L +EEEE K
Sbjct: 607 SIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQS 666
Query: 515 VGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHR 574
+ HSEK+A+ +GLI+ IR+ KNLR+CGDCHS K IS + RE+IVRD RFH
Sbjct: 667 LNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHH 726
Query: 575 FWDGYCSCSDYW 586
F +G CSC+D+W
Sbjct: 727 FRNGQCSCNDFW 738
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 221/453 (48%), Gaps = 44/453 (9%)
Query: 30 KQLHALALKSGQIHDVFVGCSAFDMYSKTGLK--DDADKMFDEMPERNLATWNAYISNAV 87
KQ H +++G D + F M + + + A K+FDE+P+ N WN I
Sbjct: 47 KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106
Query: 88 LGGRPKNAIDAFINL-RRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNV 146
G P +I AF+++ + P+ TF + A ++ S L LG+ LHG V+S +V
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDV 166
Query: 147 SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206
V N L+ Y C ++ A VF I +K+ VSW SM+ +VQ + ++F E
Sbjct: 167 FVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESE 226
Query: 207 GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266
V+ + VLSACA+I LE GR V + + V N+ + +A++DMY KCGSI+DA
Sbjct: 227 DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDA 286
Query: 267 EIAF-------------------------------NKMPERNLVCWNAIIGGYAHQGHAD 295
+ F N MP++++V WNA+I Y G +
Sbjct: 287 KRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPN 346
Query: 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355
AL F E+ + + N +TLV LSAC++ GA+E G + +S K+GI+ +
Sbjct: 347 EALIVFHELQLQKNMKL-NQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTS 404
Query: 356 CVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKL-DP 414
++ + + G ++++ E+ + R + VW A++ ++G G A D +K+ +
Sbjct: 405 ALIHMYSKCGDLEKSREVFNSVEKR-DVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEA 460
Query: 415 NDSGNHVLLSNMFAA---TGRWEEADLVRKEMK 444
N N V +N+F A TG +EA+ + +M+
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/546 (38%), Positives = 325/546 (59%), Gaps = 11/546 (2%)
Query: 42 IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFIN 101
+ DV + + G D+A +FDEM ERN+ TW I+ G R N +D
Sbjct: 169 VKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMIT----GYRQNNRVDVARK 224
Query: 102 LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161
L E +++ + L + ++ + + V CN ++ +G+ E
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKP----VIACNAMIVGFGEVGE 280
Query: 162 VGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSA 221
+ A+ VFD + D+++ +W M+ Y + E +F +++GV P + S+LS
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340
Query: 222 CARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCW 281
CA +A L+ GR VHA V+ + +++V S L+ MY KCG + A++ F++ ++++ W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400
Query: 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSM 341
N+II GYA G + AL F EM S +PN VTL+ +L+ACS AG +E+G++IF SM
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPS--SGTMPNKVTLIAILTACSYAGKLEEGLEIFESM 458
Query: 342 TLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPEL 401
K+ + P EHY+C VD+LGRAG VD+A E+I+ M ++P +VWGALL AC+ + + +L
Sbjct: 459 ESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDL 518
Query: 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKN 461
+AA LF+ +P+++G +VLLS++ A+ +W + +VRK M+ + K GCSWI V
Sbjct: 519 AEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGK 578
Query: 462 RIHIF-QAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSE 520
++H+F + +H I ML K ++ AGY PD + L+DV+EEEK+ + HSE
Sbjct: 579 KVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSE 638
Query: 521 KIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYC 580
++A+A+GL+ +P GVPIR+ KNLR+CGDCH+A K IS + RE+I+RD NRFH F +G C
Sbjct: 639 RLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGEC 698
Query: 581 SCSDYW 586
SC DYW
Sbjct: 699 SCRDYW 704
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 140/360 (38%), Gaps = 62/360 (17%)
Query: 35 LALKSGQIHDVFVGCS-AFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPK 93
L L+ + V CS S+ G ++A K FD + + + +WN+ +S G PK
Sbjct: 6 LILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPK 65
Query: 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLV 153
A F + E +++++ ++ ++ R + + + NV +V
Sbjct: 66 EARQLFDEM----SERNVVSWNGLVSGYIKNRMIVEARNVFELMP----ERNVVSWTAMV 117
Query: 154 DFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF 213
Y + VG A+ +F + ++N+VSW M + + + +++ D
Sbjct: 118 KGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLY-----------DM 166
Query: 214 M-ISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNK 272
M + V+++ I GL C EG + +A + F++
Sbjct: 167 MPVKDVVASTNMIGGL-------------CREGR----------------VDEARLIFDE 197
Query: 273 MPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE 332
M ERN+V W +I GY D+A FE M V+ +L + +G +E
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE------KTEVSWTSMLLGYTLSGRIE 251
Query: 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNA 392
+ F M + KP A +V G G + +A + M R + W ++ A
Sbjct: 252 DAEEFFEVMPM----KPVIACNAMIVG-FGEVGEISKARRVFDLMEDRDN-ATWRGMIKA 305
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 4/187 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+++ + P+ + + + L G+Q+HA ++ DV+V MY K G
Sbjct: 322 MQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGE 381
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
A +FD +++ WN+ IS G + A+ F + +G P+ +T A L A
Sbjct: 382 LVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTA 441
Query: 121 CSDCSLLQLGRQLHGFLVRSGF--DGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
CS L+ G ++ + S F V + VD G+ +V A + + + K D
Sbjct: 442 CSYAGKLEEGLEIFESM-ESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDA 500
Query: 179 S-WCSML 184
+ W ++L
Sbjct: 501 TVWGALL 507
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 27/258 (10%)
Query: 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS 216
GK NE A+ FD + K SW S++ Y N + Q+F V + ++S
Sbjct: 31 GKINE---ARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87
Query: 217 SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276
+ + R+V + E N+ +A+V Y + G + +AE F +MPER
Sbjct: 88 GYIKNRMIVEA----RNVFELMP----ERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER 139
Query: 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMK 336
N V W + GG G D A ++ M A N + +C R G V++
Sbjct: 140 NEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLC------REGRVDEARL 193
Query: 337 IFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVY 396
IF M + + + ++ + VD A ++ + MP + +S W ++L +
Sbjct: 194 IFDEMRERNVVT-----WTTMITGYRQNNRVDVARKLFEVMPEKTEVS-WTSMLLGYTLS 247
Query: 397 GKPELGRIAADNLFKLDP 414
G+ E A+ F++ P
Sbjct: 248 GRIE----DAEEFFEVMP 261
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/542 (39%), Positives = 315/542 (58%), Gaps = 7/542 (1%)
Query: 45 VFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRR 104
+F+ +MY K L +DA ++FD+MP+RN+ +W IS + A++ + + R
Sbjct: 96 MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155
Query: 105 TGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164
P++ T+ + L +C+ S + R LH +++ G + +V V + L+D + K E
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPED 212
Query: 165 AKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR 224
A VFD ++ + + W S++ + QN + ++F +R G + ++SVL AC
Sbjct: 213 ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTG 272
Query: 225 IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAI 284
+A LELG H VK + ++ + +ALVDMY KCGS++DA FN+M ER+++ W+ +
Sbjct: 273 LALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTM 330
Query: 285 IGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344
I G A G++ AL FE M S + PNY+T+V VL ACS AG +E G F SM
Sbjct: 331 ISGLAQNGYSQEALKLFERMKSSGTK--PNYITIVGVLFACSHAGLLEDGWYYFRSMKKL 388
Query: 345 YGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRI 404
YGI P EHY C++DLLG+AG +D A +++ EM P W LL ACRV L
Sbjct: 389 YGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEY 448
Query: 405 AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIH 464
AA + LDP D+G + LLSN++A + +W+ + +R M+D GIKK GCSWI V +IH
Sbjct: 449 AAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508
Query: 465 IFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIAL 524
F D SH + E+ L +L + GY+P+TNF L D+E E+ + HHSEK+AL
Sbjct: 509 AFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLAL 568
Query: 525 AFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSD 584
AFGL+ +P IRI KNLRICGDCH K S + R +++RD R+H F DG CSC D
Sbjct: 569 AFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGD 628
Query: 585 YW 586
YW
Sbjct: 629 YW 630
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 163/338 (48%), Gaps = 13/338 (3%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M R+ + PN +T+ + ++ + + + LH +K G DVFV + D+++K G
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNGMS---DVRMLHCGIIKEGLESDVFVRSALIDVFAKLGE 209
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DA +FDEM + WN+ I R A++ F ++R G + T + L A
Sbjct: 210 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 269
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C+ +LL+LG Q H +V+ +D ++ + N LVD Y KC + A VF+ + +++ ++W
Sbjct: 270 CTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG----RSVHA 236
+M+ QN + ++F + G +P I VL AC+ LE G RS+
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387
Query: 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHAD 295
+ V + ++D+ GK G + DA N+M E + V W ++G Q +
Sbjct: 388 LYGIDPVREHY---GCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMV 444
Query: 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333
+A + +++ ++ E Y L + + + +VE+
Sbjct: 445 LAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 482
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 9/297 (3%)
Query: 95 AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154
A+ A +L+ G D T+ + C + G + L +G + + N L++
Sbjct: 45 AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104
Query: 155 FYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFM 214
Y K N + A +FD + +N +SW +M+ Y + + ++ + R+ V P +
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164
Query: 215 ISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274
SSVL +C G+ R +H +K +E ++FV SAL+D++ K G +DA F++M
Sbjct: 165 YSSVLRSC---NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221
Query: 275 ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334
+ + WN+IIGG+A +D+AL F+ M R + TL VL AC+ +E G
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMK--RAGFIAEQATLTSVLRACTGLALLELG 279
Query: 335 MKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLN 391
M+ + +KY + +VD+ + G ++ A + +M R I+ W +++
Sbjct: 280 MQAHVHI-VKYDQDLILNN--ALVDMYCKCGSLEDALRVFNQMKERDVIT-WSTMIS 332
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/589 (38%), Positives = 337/589 (57%), Gaps = 9/589 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR + ++ +F + K + L +QLH +K G + D + + YSK
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345
Query: 61 KDDADKMFDEMP-ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN 119
DA ++F E+ N+ +W A IS + + A+D F ++R G P+ T+ L
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT 405
Query: 120 ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS 179
A S ++H +V++ ++ + +V L+D Y K +V A VF GI DK+ V+
Sbjct: 406 ALPVIS----PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVA 461
Query: 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI-AGLELGRSVHAVA 238
W +ML Y Q E E +MF + G++P +F SS+L+ CA A + G+ H A
Sbjct: 462 WSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFA 521
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
+K+ ++ ++ V SAL+ MY K G+I+ AE F + E++LV WN++I GYA G A AL
Sbjct: 522 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKAL 581
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
F+EM + + + VT + V +AC+ AG VE+G K F M I P EH +C+V
Sbjct: 582 DVFKEMKKRKVKM--DGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMV 639
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418
DL RAG +++A ++I+ MP ++W +L ACRV+ K ELGR+AA+ + + P DS
Sbjct: 640 DLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSA 699
Query: 419 NHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTE 478
+VLLSNM+A +G W+E VRK M + +KK G SWI VKN+ + F A D SH +
Sbjct: 700 AYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQ 759
Query: 479 IQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIR 538
I L L +K GY PDT++ L D+++E K + HSE++A+AFGLIA P G P+
Sbjct: 760 IYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLL 819
Query: 539 ITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRF-WDGYCSCSDYW 586
I KNLR+CGDCH K I+ I RE++VRD+NRFH F DG CSC D+W
Sbjct: 820 IIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 193/399 (48%), Gaps = 8/399 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ E PN FTF + + G Q+H + +K+G + V S ++Y K G
Sbjct: 185 MQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGN 244
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
A +FD+ +++ TWN+ IS G A+ F ++R +F + +
Sbjct: 245 VRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKL 304
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI-IDKNDVS 179
C++ L+ QLH +V+ GF + ++ L+ Y KC + A +F I N VS
Sbjct: 305 CANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVS 364
Query: 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAV 239
W +M+ ++QN +E +F +R+GV P +F S +L+A I+ E VHA V
Sbjct: 365 WTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVV 420
Query: 240 KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALS 299
K E + VG+AL+D Y K G +++A F+ + ++++V W+A++ GYA G + A+
Sbjct: 421 KTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIK 480
Query: 300 SFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359
F E+T + PN T +L+ C+ A K F+ +K + + ++
Sbjct: 481 MFGELTKGGIK--PNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 360 LLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGK 398
+ + G ++ A E+ K + +S W ++++ +G+
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVS-WNSMISGYAQHGQ 576
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 177/389 (45%), Gaps = 9/389 (2%)
Query: 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP 72
F + K S+ L + G+QLH +K G + DV VG S D Y K D K+FDEM
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155
Query: 73 ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQ 132
ERN+ TW IS + F+ ++ G +P+ TF A L ++ + G Q
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Query: 133 LHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYE 192
+H +V++G D + V N L++ Y KC V A+++FD K+ V+W SM+ Y N
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275
Query: 193 EENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSA 252
+ MF + R V + +SV+ CA + L +H VK + + +A
Sbjct: 276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTA 335
Query: 253 LVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEA 311
L+ Y KC ++ DA F ++ N+V W A+I G+ + A+ F EM R
Sbjct: 336 LMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMK--RKGV 393
Query: 312 VPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAY 371
PN T +L+A E ++ +K + + ++D + G V+ A
Sbjct: 394 RPNEFTYSVILTALPVISPSE-----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAA 448
Query: 372 EIIKEMPMRPTISVWGALLNACRVYGKPE 400
++ + + ++ W A+L G+ E
Sbjct: 449 KVFSGIDDKDIVA-WSAMLAGYAQTGETE 476
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 7/256 (2%)
Query: 63 DADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122
+A +FD+ P R+ ++ + + GR + A F+N+ R G E D F + L +
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104
Query: 123 DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCS 182
GRQLH ++ GF +VSV LVD Y K + + VFD + ++N V+W +
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164
Query: 183 MLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKAC 242
++ Y +N + +F+ + EG +P F ++ L A G VH V VK
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224
Query: 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFE 302
++ I V ++L+++Y KCG+++ A I F+K +++V WN++I GYA G AL F
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF- 283
Query: 303 EMTSMRCEAVPNYVTL 318
SMR NYV L
Sbjct: 284 --YSMRL----NYVRL 293
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/558 (36%), Positives = 330/558 (59%), Gaps = 3/558 (0%)
Query: 30 KQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLG 89
K+LH +LK +++ V + Y+K G A ++F + + + +WNA I
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474
Query: 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVC 149
P+ ++DA + ++ +G PD T C+ L+ACS L+LG+++HGF++R+ + ++ V
Sbjct: 475 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 534
Query: 150 NGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE 209
++ Y C E+ + +FD + DK+ VSW +++ Y+QN + +F G++
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 594
Query: 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIA 269
+ V AC+ + L LGR HA A+K +E + F+ +L+DMY K GSI +
Sbjct: 595 LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKV 654
Query: 270 FNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG 329
FN + E++ WNA+I GY G A A+ FEEM R P+ +T + VL+AC+ +G
Sbjct: 655 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ--RTGHNPDDLTFLGVLTACNHSG 712
Query: 330 AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII-KEMPMRPTISVWGA 388
+ +G++ M +G+KP +HYACV+D+LGRAG +D+A ++ +EM + +W +
Sbjct: 713 LIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKS 772
Query: 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448
LL++CR++ E+G A LF+L+P N+VLLSN++A G+WE+ VR+ M ++ +
Sbjct: 773 LLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSL 832
Query: 449 KKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEE 508
+K AGCSWI + ++ F + + EI+++ + L ++ GY PDT +D+ E
Sbjct: 833 RKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSE 892
Query: 509 EEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRD 568
EEK+ ++ HSEK+AL +GLI G IR+ KNLRIC DCH+A K IS ++ RE++VRD
Sbjct: 893 EEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRD 952
Query: 569 NNRFHRFWDGYCSCSDYW 586
N RFH F +G CSC DYW
Sbjct: 953 NKRFHHFKNGVCSCGDYW 970
Score = 152 bits (383), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 165/336 (49%), Gaps = 8/336 (2%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
P+ FT+PC+ KA + + G +H L +K+G + DVFVG + Y G DA ++
Sbjct: 185 PDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQL 244
Query: 68 FDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE----PDLITFCAFLNACSD 123
FD MPERNL +WN+ I G + + + G+ PD+ T L C+
Sbjct: 245 FDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAR 304
Query: 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSM 183
+ LG+ +HG+ V+ D + + N L+D Y KC + A+++F +KN VSW +M
Sbjct: 305 EREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTM 364
Query: 184 LVVYVQNYEEENGCQMF--LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241
+ + + + + A E V+ + I + + C + L + +H ++K
Sbjct: 365 VGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ 424
Query: 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSF 301
N V +A V Y KCGS+ A+ F+ + + + WNA+IGG+A ++L +
Sbjct: 425 EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAH 484
Query: 302 EEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKI 337
+M +P+ T+ +LSACS+ ++ G ++
Sbjct: 485 LQMKI--SGLLPDSFTVCSLLSACSKLKSLRLGKEV 518
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 176/372 (47%), Gaps = 8/372 (2%)
Query: 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVL 88
GK +H A+K ++ + + DMYSK G +A +F +N+ +WN +
Sbjct: 311 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 370
Query: 89 GGRPKNAIDAFINLRRTGGE---PDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN 145
G D + GGE D +T + C S L ++LH + ++ F N
Sbjct: 371 EGDTHGTFDVLRQML-AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYN 429
Query: 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARR 205
V N V Y KC + A+ VF GI K SW +++ + Q+ + L +
Sbjct: 430 ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 489
Query: 206 EGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265
G+ P F + S+LSAC+++ L LG+ VH ++ +E ++FV +++ +Y CG +
Sbjct: 490 SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCT 549
Query: 266 AEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC 325
+ F+ M +++LV WN +I GY G D AL F +M + ++++ V AC
Sbjct: 550 VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG--ISMMPVFGAC 607
Query: 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISV 385
S ++ G + ++ LK+ ++ A ++D+ + G + ++ ++ + + T S
Sbjct: 608 SLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS- 665
Query: 386 WGALLNACRVYG 397
W A++ ++G
Sbjct: 666 WNAMIMGYGIHG 677
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 158/316 (50%), Gaps = 6/316 (1%)
Query: 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCS-AFDMYSKTGLKDDADKMFDEMPER 74
L +AS G+++H L S ++ + V C+ MY+ G DD+ +FD + +
Sbjct: 90 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149
Query: 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE-PDLITFCAFLNACSDCSLLQLGRQL 133
NL WNA IS+ ++ FI + T PD T+ + AC+ S + +G +
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 209
Query: 134 HGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQN-YE 192
HG +V++G +V V N LV FYG V A +FD + ++N VSW SM+ V+ N +
Sbjct: 210 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 269
Query: 193 EENGCQMFLTARREG---VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFV 249
EE+ + G P + +VL CAR + LG+ VH AVK ++ + +
Sbjct: 270 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL 329
Query: 250 GSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRC 309
+AL+DMY KCG I +A++ F +N+V WN ++GG++ +G +M +
Sbjct: 330 NNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGE 389
Query: 310 EAVPNYVTLVCVLSAC 325
+ + VT++ + C
Sbjct: 390 DVKADEVTILNAVPVC 405
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 153/347 (44%), Gaps = 3/347 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ + P+ FT L A S L GK++H +++ D+FV S +Y G
Sbjct: 487 MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE 546
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+FD M +++L +WN I+ + G P A+ F + G + I+ A
Sbjct: 547 LCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 606
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
CS L+LGR+ H + ++ + + + L+D Y K + + VF+G+ +K+ SW
Sbjct: 607 CSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 666
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG-RSVHAVAV 239
+M++ Y + + ++F +R G P D VL+AC + G R + +
Sbjct: 667 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 726
Query: 240 KACVEGNIFVGSALVDMYGKCGSIQDA--EIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297
++ N+ + ++DM G+ G + A +A E ++ W +++ + +M
Sbjct: 727 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMG 786
Query: 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344
++ + E NYV L + + + V K + M+L+
Sbjct: 787 EKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 20/308 (6%)
Query: 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV- 148
G +++ DAF+ +R G L A +++GR++H + S N V
Sbjct: 71 GDDESSSDAFLLVREALG--------LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVL 122
Query: 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQN--YEE--ENGCQMFLTAR 204
C ++ Y C ++ VFD + KN W +++ Y +N Y+E E +M T
Sbjct: 123 CTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT- 181
Query: 205 REGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQ 264
+ P F V+ ACA ++ + +G +VH + VK + ++FVG+ALV YG G +
Sbjct: 182 --DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 239
Query: 265 DAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEA--VPNYVTLVCVL 322
DA F+ MPERNLV WN++I ++ G ++ + EM + +P+ TLV VL
Sbjct: 240 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299
Query: 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPT 382
C+R + G K + +K + ++D+ + G + A I K M
Sbjct: 300 PVCAREREIGLG-KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK-MNNNKN 357
Query: 383 ISVWGALL 390
+ W ++
Sbjct: 358 VVSWNTMV 365
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/563 (37%), Positives = 326/563 (57%), Gaps = 7/563 (1%)
Query: 30 KQLHALALKSG-QIHDVFVGCS-AFDMYSKTGLK--DDADKMFDEMPER-NLATWNAYIS 84
+Q+HA +++ G I D +G F + S A K+F ++ + N+ WN I
Sbjct: 34 RQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIR 93
Query: 85 NAVLGGRPKNAIDAFINLRRTG-GEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFD 143
G +A + +R +G EPD T+ + A + + ++LG +H ++RSGF
Sbjct: 94 GYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFG 153
Query: 144 GNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTA 203
+ V N L+ Y C +V A VFD + +K+ V+W S++ + +N + E ++
Sbjct: 154 SLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM 213
Query: 204 RREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263
+G++P F I S+LSACA+I L LG+ VH +K + N+ + L+D+Y +CG +
Sbjct: 214 NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRV 273
Query: 264 QDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323
++A+ F++M ++N V W ++I G A G A+ F+ M S +P +T V +L
Sbjct: 274 EEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEG-LLPCEITFVGILY 332
Query: 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTI 383
ACS G V++G + F M +Y I+P EH+ C+VDLL RAG V +AYE IK MPM+P +
Sbjct: 333 ACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNV 392
Query: 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443
+W LL AC V+G +L A + +L+PN SG++VLLSNM+A+ RW + +RK+M
Sbjct: 393 VIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQM 452
Query: 444 KDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFAL 503
G+KK G S + V NR+H F D SH ++ I A L ++ +++ GY+P +
Sbjct: 453 LRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVY 512
Query: 504 YDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGRE 563
DVEEEEK V +HSEKIA+AF LI+ P PI + KNLR+C DCH A K +S + RE
Sbjct: 513 VDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNRE 572
Query: 564 VIVRDNNRFHRFWDGYCSCSDYW 586
++VRD +RFH F +G CSC DYW
Sbjct: 573 IVVRDRSRFHHFKNGSCSCQDYW 595
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 15/353 (4%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+ P+ T+P L KA + + G+ +H++ ++SG ++V S +Y+ G A
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
K+FD+MPE++L WN+ I+ G+P+ A+ + + G +PD T + L+AC+
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
L LG+++H ++++ G N+ N L+D Y +C V AK +FD ++DKN VSW S++V
Sbjct: 237 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296
Query: 186 VYVQNYEEENGCQMF-LTARREGVEPKDFMISSVLSACARIA----GLELGRSVHAVAVK 240
N + ++F EG+ P + +L AC+ G E R + +
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMRE---E 353
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADMALS 299
+E I +VD+ + G ++ A MP + N+V W ++G G +D+A
Sbjct: 354 YKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEF 413
Query: 300 SFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK--PG 350
+ ++ + +YV L + ++ R V+K K L+ G+K PG
Sbjct: 414 ARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRK----QMLRDGVKKVPG 462
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M + I P+ FT L A + + GK++H +K G ++ D+Y++ G
Sbjct: 213 MNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGR 272
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITFCAFLN 119
++A +FDEM ++N +W + I + G K AI+ F + T G P ITF L
Sbjct: 273 VEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILY 332
Query: 120 ACSDCSLLQLG 130
ACS C +++ G
Sbjct: 333 ACSHCGMVKEG 343
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/531 (38%), Positives = 318/531 (59%), Gaps = 10/531 (1%)
Query: 57 KTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA 116
K G D+A ++FDEM ER++ TW ++ G N +D + E +++ +
Sbjct: 184 KEGRVDEAREIFDEMSERSVITWTTMVT----GYGQNNRVDDARKIFDVMPEKTEVSWTS 239
Query: 117 FLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKN 176
L ++ +L + V CN ++ G+ E+ A+ VFD + ++N
Sbjct: 240 MLMGYVQNGRIEDAEELFEVMPVKP----VIACNAMISGLGQKGEIAKARRVFDSMKERN 295
Query: 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236
D SW +++ ++ +N E +F+ +++GV P + S+LS CA +A L G+ VHA
Sbjct: 296 DASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHA 355
Query: 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADM 296
V+ + +++V S L+ MY KCG + +++ F++ P ++++ WN+II GYA G +
Sbjct: 356 QLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEE 415
Query: 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYAC 356
AL F EM + PN VT V LSACS AG VE+G+KI+ SM +G+KP HYAC
Sbjct: 416 ALKVFCEM-PLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYAC 474
Query: 357 VVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416
+VD+LGRAG + A E+I M + P +VWG+LL ACR + + ++ A L +++P +
Sbjct: 475 MVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPEN 534
Query: 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIF-QAKDTSHER 475
SG ++LLSNM+A+ GRW + +RK MK ++K GCSW V+N++H F + SH
Sbjct: 535 SGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPE 594
Query: 476 NTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGV 535
I +L +L ++ AGY PD ++AL+DV+EEEK+ + +HSE++A+A+ L+ + G+
Sbjct: 595 QESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGI 654
Query: 536 PIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
PIR+ KNLR+C DCH+A K IS + RE+I+RD NRFH F +G CSC DYW
Sbjct: 655 PIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 173/442 (39%), Gaps = 102/442 (23%)
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF 114
Y K G D+A K+FD MPERN+ +W A + V G+ A F + +
Sbjct: 89 YMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVML 148
Query: 115 CAFL------NACS------DCSLLQLGRQLHGFL-------VRSGFDG----NVSVCNG 151
FL +AC D + +HG R FD +V
Sbjct: 149 IGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTT 208
Query: 152 LVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK 211
+V YG+ N V A+ +FD + +K +VSW SML+ YVQN E+ ++F V P
Sbjct: 209 MVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELF------EVMP- 261
Query: 212 DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFN 271
+ V++ A I+GL G+ G I A F+
Sbjct: 262 ---VKPVIACNAMISGL-----------------------------GQKGEIAKARRVFD 289
Query: 272 KMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331
M ERN W +I + G AL F M P + TL+ +LS C+ ++
Sbjct: 290 SMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVR--PTFPTLISILSVCASLASL 347
Query: 332 EKGMK------------------IFYSMTLKYG--IK--------PGAE--HYACVVDLL 361
G + + +M +K G +K P + + ++
Sbjct: 348 HHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGY 407
Query: 362 GRAGLVDRAYEIIKEMPM----RPTISVWGALLNACRVYGKPELG-RI--AADNLFKLDP 414
GL + A ++ EMP+ +P + A L+AC G E G +I + +++F + P
Sbjct: 408 ASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKP 467
Query: 415 NDSGNHVLLSNMFAATGRWEEA 436
+ ++ + +M GR+ EA
Sbjct: 468 I-TAHYACMVDMLGRAGRFNEA 488
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 153/345 (44%), Gaps = 38/345 (11%)
Query: 56 SKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPD--LIT 113
S+ G +A K+FD +++++WN+ ++ P++A F + PD +I+
Sbjct: 28 SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------PDRNIIS 81
Query: 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173
+ ++ + R++ + + NV LV Y +V +A+ +F +
Sbjct: 82 WNGLVSGYMKNGEIDEARKVFDLMP----ERNVVSWTALVKGYVHNGKVDVAESLFWKMP 137
Query: 174 DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGL-ELGR 232
+KN VSW ML+ ++Q+ ++ C+++ E + KD ++ + I GL + GR
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLY-----EMIPDKDN-----IARTSMIHGLCKEGR 187
Query: 233 SVHAVAV-KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ 291
A + E ++ + +V YG+ + DA F+ MPE+ V W +++ GY
Sbjct: 188 VDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQN 247
Query: 292 GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351
G + A FE M V + ++S + G + K ++F SM +
Sbjct: 248 GRIEDAEELFEVM------PVKPVIACNAMISGLGQKGEIAKARRVFDSMKER-----ND 296
Query: 352 EHYACVVDLLGRAGLVDRAYE---IIKEMPMRPTISVWGALLNAC 393
+ V+ + R G A + ++++ +RPT ++L+ C
Sbjct: 297 ASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVC 341
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 123/310 (39%), Gaps = 68/310 (21%)
Query: 136 FLVRSGFDGNVS--VCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEE 193
L+R + + N + + ++ A+ +FD K+ SW SM+ Y N
Sbjct: 5 ILLRRTYSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMP 64
Query: 194 ENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSAL 253
+ ++F D M + NI + L
Sbjct: 65 RDARKLF-----------DEM----------------------------PDRNIISWNGL 85
Query: 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP 313
V Y K G I +A F+ MPERN+V W A++ GY H G D+A S F +M
Sbjct: 86 VSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE------K 139
Query: 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA--CVVDLLGRAGLVDRAY 371
N V+ +L + G ++ K+ Y + P ++ A ++ L + G VD A
Sbjct: 140 NKVSWTVMLIGFLQDGRIDDACKL-------YEMIPDKDNIARTSMIHGLCKEGRVDEAR 192
Query: 372 EIIKEMPMRPTISVWGALLNACRVYGKPELGRI-AADNLFKLDPNDSGNHVLLSNM---F 427
EI EM R I+ W ++ YG+ R+ A +F + P + V ++M +
Sbjct: 193 EIFDEMSERSVIT-WTTMVTG---YGQN--NRVDDARKIFDVMPEKT--EVSWTSMLMGY 244
Query: 428 AATGRWEEAD 437
GR E+A+
Sbjct: 245 VQNGRIEDAE 254
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 1 MRRECISPNDFTFPCLFKASS------ALHIPVTGKQLHALALKSGQIHDVFVGCSAFDM 54
M+++ + P TFP L S +LH GKQ+HA ++ DV+V M
Sbjct: 322 MQKQGVRP---TFPTLISILSVCASLASLH---HGKQVHAQLVRCQFDVDVYVASVLMTM 375
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLIT 113
Y K G + +FD P +++ WN+ IS G + A+ F + +G +P+ +T
Sbjct: 376 YIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVT 435
Query: 114 FCAFLNACSDCSLLQLGRQLHGFLVRS-GFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172
F A L+ACS +++ G +++ + G + +VD G+ A + D +
Sbjct: 436 FVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495
Query: 173 IDKNDVS-WCSML 184
+ D + W S+L
Sbjct: 496 TVEPDAAVWGSLL 508
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/619 (36%), Positives = 347/619 (56%), Gaps = 36/619 (5%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSG-QIHDVFVGCSAFDMYSKTG 59
+R E ++PN T C+ A + L TG++++A SG +++D+ V + DMY K
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS-ALVDMYMKCN 285
Query: 60 LKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN 119
D A ++FDE NL NA SN V G + A+ F + +G PD I+ + ++
Sbjct: 286 AIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAIS 345
Query: 120 ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS 179
+CS + G+ HG+++R+GF+ ++CN L+D Y KC+ A +FD + +K V+
Sbjct: 346 SCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVT 405
Query: 180 WCSMLVVYVQNYEEENGCQMFLT--------------------------------ARREG 207
W S++ YV+N E + + F T +EG
Sbjct: 406 WNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG 465
Query: 208 VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267
V + S+ SAC + L+L + ++ K ++ ++ +G+ LVDM+ +CG + A
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525
Query: 268 IAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327
FN + R++ W A IG A G+A+ A+ F++M + P+ V V L+ACS
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLK--PDGVAFVGALTACSH 583
Query: 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWG 387
G V++G +IFYSM +G+ P HY C+VDLLGRAGL++ A ++I++MPM P +W
Sbjct: 584 GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWN 643
Query: 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447
+LL ACRV G E+ AA+ + L P +G++VLLSN++A+ GRW + VR MK+ G
Sbjct: 644 SLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKG 703
Query: 448 IKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVE 507
++K G S I ++ + H F + D SH I+AML ++ + G++PD + L DV+
Sbjct: 704 LRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVD 763
Query: 508 EEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVR 567
E+EK+ + HSEK+A+A+GLI+ G IRI KNLR+C DCHS KF S + RE+I+R
Sbjct: 764 EKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILR 823
Query: 568 DNNRFHRFWDGYCSCSDYW 586
DNNRFH G CSC D+W
Sbjct: 824 DNNRFHYIRQGKCSCGDFW 842
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 187/404 (46%), Gaps = 10/404 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M ISP+ +TFP A + G Q+H L +K G D+FV S Y++ G
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 184
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINL-RRTGGEPDLITFCAFLN 119
D A K+FDEM ERN+ +W + I K+A+D F + R P+ +T ++
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244
Query: 120 ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS 179
AC+ L+ G +++ F+ SG + N + + LVD Y KCN + +AK +FD N
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304
Query: 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAV 239
+M YV+ +F GV P + S +S+C+++ + G+S H +
Sbjct: 305 CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL 364
Query: 240 KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALS 299
+ E + +AL+DMY KC A F++M + +V WN+I+ GY G D A
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424
Query: 300 SFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359
+FE M N V+ ++S + E+ +++F SM + G+ +
Sbjct: 425 TFETMPE------KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478
Query: 360 LLGRAGLVDRA---YEIIKEMPMRPTISVWGALLNACRVYGKPE 400
G G +D A Y I++ ++ + + L++ G PE
Sbjct: 479 ACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE 522
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 5/313 (1%)
Query: 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLV 138
+N+ I G AI F+ + +G PD TF L+AC+ G Q+HG +V
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 139 RSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQ 198
+ G+ ++ V N LV FY +C E+ A+ VFD + ++N VSW SM+ Y + ++
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 199 MFL-TARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMY 257
+F R E V P + V+SACA++ LE G V+A + +E N + SALVDMY
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281
Query: 258 GKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVT 317
KC +I A+ F++ NL NA+ Y QG AL F M M P+ ++
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM--MDSGVRPDRIS 339
Query: 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377
++ +S+CS+ + G K + L+ G + ++D+ + D A+ I M
Sbjct: 340 MLSAISSCSQLRNILWG-KSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Query: 378 PMRPTISVWGALL 390
+ T+ W +++
Sbjct: 399 SNK-TVVTWNSIV 410
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/611 (36%), Positives = 333/611 (54%), Gaps = 60/611 (9%)
Query: 31 QLHALALKSGQIHDVFVG------CSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYIS 84
Q+HA+ +KSGQ+ D C+ D++ + D A K+F++MP+RN +WN I
Sbjct: 41 QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRD--LDYAHKIFNQMPQRNCFSWNTIIR 98
Query: 85 NAVLGGRPKN--AIDAFINLRRTGG-EPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG 141
K AI F + EP+ TF + L AC+ +Q G+Q+HG ++ G
Sbjct: 99 GFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYG 158
Query: 142 F---------------------------------------------DGNVSVCNGLVDFY 156
F DG + + N ++D Y
Sbjct: 159 FGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGY 218
Query: 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS 216
+ + A+++FD + ++ VSW +M+ Y N ++ ++F ++ + P +
Sbjct: 219 MRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLV 278
Query: 217 SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276
SVL A +R+ LELG +H A + + + +GSAL+DMY KCG I+ A F ++P
Sbjct: 279 SVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE 338
Query: 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV-PNYVTLVCVLSACSRAGAVEKGM 335
N++ W+A+I G+A G A A+ F MR V P+ V + +L+ACS G VE+G
Sbjct: 339 NVITWSAMINGFAIHGQAGDAIDCF---CKMRQAGVRPSDVAYINLLTACSHGGLVEEGR 395
Query: 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRV 395
+ F M G++P EHY C+VDLLGR+GL+D A E I MP++P +W ALL ACR+
Sbjct: 396 RYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRM 455
Query: 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCS 455
G E+G+ A+ L + P+DSG +V LSNM+A+ G W E +R MK+ I+K GCS
Sbjct: 456 QGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCS 515
Query: 456 WISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEV 515
I + +H F +D SH + EI +ML ++ ++++ AGY P T L ++EEE+K +
Sbjct: 516 LIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVL 575
Query: 516 GHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRF 575
+HSEKIA AFGLI+ PG PIRI KNLRIC DCHS+ K IS + R++ VRD RFH F
Sbjct: 576 HYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHF 635
Query: 576 WDGYCSCSDYW 586
DG CSC DYW
Sbjct: 636 QDGSCSCMDYW 646
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 152/344 (44%), Gaps = 47/344 (13%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M E + PN FTFP + KA + GKQ+H LALK G D FV + MY G
Sbjct: 119 MSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGF 178
Query: 61 KDDA-----------------DK----------------------------MFDEMPERN 75
DA D+ +FD+M +R+
Sbjct: 179 MKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRS 238
Query: 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHG 135
+ +WN IS L G K+A++ F +++ P+ +T + L A S L+LG LH
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298
Query: 136 FLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEEN 195
+ SG + + + L+D Y KC + A VF+ + +N ++W +M+ + + + +
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGD 358
Query: 196 GCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA-CVEGNIFVGSALV 254
F R+ GV P D ++L+AC+ +E GR + V +E I +V
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418
Query: 255 DMYGKCGSIQDAEIAFNKMPER-NLVCWNAIIGGYAHQGHADMA 297
D+ G+ G + +AE MP + + V W A++G QG+ +M
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMG 462
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 56/329 (17%)
Query: 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN----EVGLAKVVFDGIIDKND 177
++C ++ Q+H ++SG + ++ F + ++ A +F+ + +N
Sbjct: 31 NNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNC 90
Query: 178 VSWCSMLVVYVQNYEEENGCQMFL---TARREGVEPKDFMISSVLSACARIAGLELGRSV 234
SW +++ + ++ E++ + L E VEP F SVL ACA+ ++ G+ +
Sbjct: 91 FSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQI 150
Query: 235 HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEI-------------------------- 268
H +A+K G+ FV S LV MY CG ++DA +
Sbjct: 151 HGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVL 210
Query: 269 -------------------AFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRC 309
F+KM +R++V WN +I GY+ G A+ F EM +
Sbjct: 211 WNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK--KG 268
Query: 310 EAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR 369
+ PNYVTLV VL A SR G++E G + + GI+ + ++D+ + G++++
Sbjct: 269 DIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 370 AYEIIKEMPMRPTISVWGALLNACRVYGK 398
A + + +P R + W A++N ++G+
Sbjct: 328 AIHVFERLP-RENVITWSAMINGFAIHGQ 355
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/582 (36%), Positives = 329/582 (56%), Gaps = 8/582 (1%)
Query: 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKM 67
PN+F +FK+ S GKQ H LK G I FV + MYS +A ++
Sbjct: 134 PNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRV 193
Query: 68 FDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP---DLITFCAFLNACSDC 124
D++P +L+ +++ +S + G K +D LR+T E + +T+ + L S+
Sbjct: 194 LDDLPYCDLSVFSSALSGYLECGAFKEGLDV---LRKTANEDFVWNNLTYLSSLRLFSNL 250
Query: 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML 184
L L Q+H +VR GF+ V C L++ YGKC +V A+ VFD +N +++
Sbjct: 251 RDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIM 310
Query: 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244
Y Q+ E +F + V P ++ + +L++ A ++ L+ G +H + +K+
Sbjct: 311 DAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYR 370
Query: 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEM 304
++ VG+ALV+MY K GSI+DA AF+ M R++V WN +I G +H G AL +F+ M
Sbjct: 371 NHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRM 430
Query: 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364
+ +PN +T + VL ACS G VE+G+ F + K+ ++P +HY C+V LL +A
Sbjct: 431 --IFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKA 488
Query: 365 GLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424
G+ A + ++ P+ + W LLNAC V LG+ A+ + PNDSG +VLLS
Sbjct: 489 GMFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLS 548
Query: 425 NMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLT 484
N+ A + WE VR M + G+KK G SWI ++N+ H+F A+D H T I A +
Sbjct: 549 NIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVK 608
Query: 485 KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLR 544
++ ++K GY PD A +DV+EE++ + +HSEK+A+A+GLI P P+ +TKN+R
Sbjct: 609 EVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVR 668
Query: 545 ICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
IC DCHSA K IS I R +++RD+NRFH F DG CSC DYW
Sbjct: 669 ICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 171/392 (43%), Gaps = 14/392 (3%)
Query: 20 SSALHIPVTGKQLHALAL---KSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNL 76
SS L I G+ +HA + +S + D + S ++Y K A K+FD MPERN+
Sbjct: 44 SSYLRI---GESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNV 100
Query: 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTG-GEPDLITFCAFLNACSDCSLLQLGRQLHG 135
+W A + G + F ++ +G P+ +CS+ ++ G+Q HG
Sbjct: 101 VSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHG 160
Query: 136 FLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEEN 195
++ G + V N LV Y C+ G A V D + + + S L Y++ +
Sbjct: 161 CFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKE 220
Query: 196 GCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVD 255
G + E + S L + + L L VH+ V+ + AL++
Sbjct: 221 GLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALIN 280
Query: 256 MYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315
MYGKCG + A+ F+ +N+ I+ Y + AL+ F +M + E PN
Sbjct: 281 MYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTK--EVPPNE 338
Query: 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIK 375
T +L++ + +++G + + + LK G + +V++ ++G ++ A +
Sbjct: 339 YTFAILLNSIAELSLLKQG-DLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFS 397
Query: 376 EMPMRPTISVWGALLNACRVYGKPELGRIAAD 407
M R ++ W +++ C +G LGR A +
Sbjct: 398 GMTFRDIVT-WNTMISGCSHHG---LGREALE 425
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M + + PN++TF L + + L + G LH L LKSG + V VG + +MY+K+G
Sbjct: 329 MDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGS 388
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
+DA K F M R++ TWN IS G + A++AF + TG P+ ITF L A
Sbjct: 389 IEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQA 448
Query: 121 CSDCSLLQLGRQLHGF 136
CS ++ G LH F
Sbjct: 449 CSHIGFVEQG--LHYF 462
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 121/264 (45%), Gaps = 7/264 (2%)
Query: 117 FLNACSDCSLLQLGRQLHGFLV---RSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173
L C++ S L++G +H L+ +S + N L++ Y KC E A+ +FD +
Sbjct: 37 LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMP 96
Query: 174 DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VEPKDFMISSVLSACARIAGLELGR 232
++N VSWC+M+ Y + + ++F + G P +F+ + V +C+ +E G+
Sbjct: 97 ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGK 156
Query: 233 SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG 292
H +K + + FV + LV MY C +A + +P +L +++ + GY G
Sbjct: 157 QFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECG 216
Query: 293 HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE 352
L + + + V N +T + L S + +++ +S +++G E
Sbjct: 217 AFKEGLDVLRKTANE--DFVWNNLTYLSSLRLFSNLRDLNLALQV-HSRMVRFGFNAEVE 273
Query: 353 HYACVVDLLGRAGLVDRAYEIIKE 376
++++ G+ G V A + +
Sbjct: 274 ACGALINMYGKCGKVLYAQRVFDD 297
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 215 ISSVLSACARIAGLELGRSVHA---VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFN 271
++ +L CA + L +G S+HA V ++ + + ++L+++Y KC A F+
Sbjct: 34 LNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFD 93
Query: 272 KMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331
MPERN+V W A++ GY + G L F+ M E+ PN V +CS +G +
Sbjct: 94 LMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMF-FSGESRPNEFVATVVFKSCSNSGRI 152
Query: 332 EKGMKIFYSMTLKYGI 347
E+G K F+ LKYG+
Sbjct: 153 EEG-KQFHGCFLKYGL 167
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/615 (35%), Positives = 333/615 (54%), Gaps = 32/615 (5%)
Query: 3 RECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTG--- 59
R I N F ++ + +GKQLH L + SG D F+ MYSK G
Sbjct: 37 RLNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFP 96
Query: 60 --------LKD--------------------DADKMFDEMPERNLATWNAYISNAVLGGR 91
++ +A K+FDEMP+R L TWNA I+ +
Sbjct: 97 SAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEF 156
Query: 92 PKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNG 151
+ + F + G PD T + + + + +G+Q+HG+ ++ G + ++ V +
Sbjct: 157 NEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSS 216
Query: 152 LVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK 211
L Y + ++ ++V + +N V+W ++++ QN E ++ + G P
Sbjct: 217 LAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPN 276
Query: 212 DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFN 271
+VLS+C+ +A G+ +HA A+K + V S+L+ MY KCG + DA AF+
Sbjct: 277 KITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 336
Query: 272 KMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331
+ + + V W+++I Y G D A+ F M + N V + +L ACS +G
Sbjct: 337 EREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEI-NEVAFLNLLYACSHSGLK 395
Query: 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLN 391
+KG+++F M KYG KPG +HY CVVDLLGRAG +D+A II+ MP++ I +W LL+
Sbjct: 396 DKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLS 455
Query: 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKG 451
AC ++ E+ + + ++DPNDS +VLL+N+ A+ RW + VRK M+D +KK
Sbjct: 456 ACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKE 515
Query: 452 AGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEK 511
AG SW K +H F+ D S ++ EI + L +L EMK GY PDT L+D++EEEK
Sbjct: 516 AGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEK 575
Query: 512 MTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNR 571
+++ HSEK+A+AF L+ +P G PIRI KNLR+C DCH AFK+IS I RE+ +RD +R
Sbjct: 576 ESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSR 635
Query: 572 FHRFWDGYCSCSDYW 586
FH F +G CSC DYW
Sbjct: 636 FHHFINGKCSCGDYW 650
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/586 (38%), Positives = 308/586 (52%), Gaps = 40/586 (6%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+ P+ +TFPC+ KA S V G+++H A K G +FVG MY K G +A
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 195
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+ DEM R++ +WN+ + R +A++ + D T + L A S+ +
Sbjct: 196 LVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT 255
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
V K +F + K+ VSW M+
Sbjct: 256 ---------------------------------TENVMYVKDMFFKMGKKSLVSWNVMIG 282
Query: 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245
VY++N +++ +G EP I+SVL AC + L LG+ +H + +
Sbjct: 283 VYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP 342
Query: 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMT 305
N+ + +AL+DMY KCG ++ A F M R++V W A+I Y G A++ F ++
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402
Query: 306 SMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365
VP+ + V L+ACS AG +E+G F MT Y I P EH AC+VDLLGRAG
Sbjct: 403 D--SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAG 460
Query: 366 LVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425
V AY I++M M P VWGALL ACRV+ ++G +AAD LF+L P SG +VLLSN
Sbjct: 461 KVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSN 520
Query: 426 MFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTK 485
++A GRWEE +R MK G+KK G S + V IH F D SH ++ EI L
Sbjct: 521 IYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDV 580
Query: 486 LREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIP-----PGVPIRIT 540
L ++MK GY+PD+ AL+DVEEE+K T + HSEK+A+ F L+ IRIT
Sbjct: 581 LVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRIT 640
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCH A K IS I RE+I+RD NRFH F G CSC DYW
Sbjct: 641 KNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 165/374 (44%), Gaps = 27/374 (7%)
Query: 131 RQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQN 190
R +H ++ N S+ L+ Y +V A+ VFD I ++N + M+ YV N
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG 250
G ++F T V P + VL AC+ + +GR +H A K + +FVG
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178
Query: 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE 310
+ LV MYGKCG + +A + ++M R++V WN+++ GYA D AL EM S++
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238
Query: 311 AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRA 370
+ T+ +L A S + + M K G K + ++ + + + A
Sbjct: 239 H--DAGTMASLLPAVS--NTTTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEA 293
Query: 371 YEIIKEMP---MRPTISVWGALLNACRVYGKPELGRIAADNL--FKLDPNDSGNHVLLSN 425
E+ M P ++L AC LG+ + KL PN + L+ +
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI-D 352
Query: 426 MFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTK 485
M+A G E+A V + MK + SW ++ + + F R + A+ +K
Sbjct: 353 MYAKCGCLEKARDVFENMKSRDV-----VSWTAMIS-AYGFSG------RGCDAVALFSK 400
Query: 486 LREEMKAAGYIPDT 499
L++ +G +PD+
Sbjct: 401 LQD----SGLVPDS 410
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/590 (36%), Positives = 332/590 (56%), Gaps = 14/590 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M R SP+ F+FP + K+ ++L +PV+G+QLH K G + FV + MY K GL
Sbjct: 44 MLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGL 103
Query: 61 KDDADKMFDEMPERNLAT--WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118
DA K+F+E P+ + + +NA IS + +A F ++ TG D +T +
Sbjct: 104 VADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLV 163
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV 178
C+ L LGR LHG V+ G D V+V N + Y KC V + +FD + K +
Sbjct: 164 PLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLI 223
Query: 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238
+W +++ Y QN + +++ + GV P F + SVLS+CA + ++G V +
Sbjct: 224 TWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLV 283
Query: 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298
N+FV +A + MY +CG++ A F+ MP ++LV W A+IG Y G ++ L
Sbjct: 284 ESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGL 343
Query: 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358
F++M P+ V VLSACS +G +KG+++F +M +Y ++PG EHY+C+V
Sbjct: 344 MLFDDMIKRGIR--PDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401
Query: 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418
DLLGRAG +D A E I+ MP+ P +VWGALL AC+++ ++ +A + + +PN+ G
Sbjct: 402 DLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIG 461
Query: 419 NHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTE 478
+VL+SN+++ + E +R M++ +K G S++ K R+H+F A D SHE+ E
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEE 521
Query: 479 IQAMLTKLREE-MKAAGYIPDTNFALYDVEE-EEKMTEVGHHSEKIALAFGLIAIPPGVP 536
+ ML +L M+ AG + D + EE + HSE++A+AFG++ PG
Sbjct: 522 VHRMLDELETSVMELAGNM--------DCDRGEEVSSTTREHSERLAIAFGILNSIPGTE 573
Query: 537 IRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
I + KNLR+C DCH K +S IV R+ +VRD +RFH F DG CSC DYW
Sbjct: 574 ILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 159/335 (47%), Gaps = 6/335 (1%)
Query: 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLV 138
WN + +I + ++ R+G PD +F L +C+ SL G+QLH +
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 139 RSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWC--SMLVVYVQNYEEENG 196
+ G + V L+ Y KC V A+ VF+ + +S C +++ Y N + +
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 197 CQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256
MF + GV + ++ C L LGRS+H VK ++ + V ++ + M
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 257 YGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316
Y KCGS++ F++MP + L+ WNA+I GY+ G A L +E+M S P+
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKS--SGVCPDPF 258
Query: 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376
TLV VLS+C+ GA + G ++ + G P + + R G + +A +
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVG-KLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDI 317
Query: 377 MPMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411
MP++ +S W A++ ++G E+G + D++ K
Sbjct: 318 MPVKSLVS-WTAMIGCYGMHGMGEIGLMLFDDMIK 351
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/576 (34%), Positives = 330/576 (57%), Gaps = 3/576 (0%)
Query: 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEM 71
T +F + + G+ +H++ +K+ + + DMYSK G D A +F EM
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREM 357
Query: 72 PERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGR 131
+R++ ++ + I+ G A+ F + G PD+ T A LN C+ LL G+
Sbjct: 358 SDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGK 417
Query: 132 QLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY 191
++H ++ + ++ V N L+D Y KC + A++VF + K+ +SW +++ Y +N
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC 477
Query: 192 EEENGCQMF-LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG 250
+F L + P + ++ VL ACA ++ + GR +H ++ + V
Sbjct: 478 YANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA 537
Query: 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE 310
++LVDMY KCG++ A + F+ + ++LV W +I GY G A++ F +M E
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597
Query: 311 AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRA 370
A + ++ V +L ACS +G V++G + F M + I+P EHYAC+VD+L R G + +A
Sbjct: 598 A--DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKA 655
Query: 371 YEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430
Y I+ MP+ P ++WGALL CR++ +L A+ +F+L+P ++G +VL++N++A
Sbjct: 656 YRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEA 715
Query: 431 GRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEM 490
+WE+ +RK + G++K GCSWI +K R++IF A D+S+ I+A L K+R M
Sbjct: 716 EKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARM 775
Query: 491 KAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCH 550
GY P T +AL D EE EK + HSEK+A+A G+I+ G IR+TKNLR+CGDCH
Sbjct: 776 IEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCH 835
Query: 551 SAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KF+S + RE+++RD+NRFH+F DG+CSC +W
Sbjct: 836 EMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 219 bits (557), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/392 (32%), Positives = 210/392 (53%), Gaps = 3/392 (0%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+ + +TF C+ K+ S+L G+QLH LKSG VG S Y K D A
Sbjct: 191 VEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSAR 250
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
K+FDEM ER++ +WN+ I+ V G + + F+ + +G E DL T + C+D
Sbjct: 251 KVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSR 310
Query: 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLV 185
L+ LGR +H V++ F CN L+D Y KC ++ AK VF + D++ VS+ SM+
Sbjct: 311 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 370
Query: 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245
Y + ++F EG+ P + +++VL+ CAR L+ G+ VH + +
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF 430
Query: 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMT 305
+IFV +AL+DMY KCGS+Q+AE+ F++M ++++ WN IIGGY+ +A+ ALS F +
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 306 SMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365
+ P+ T+ CVL AC+ A +KG +I + ++ G +VD+ + G
Sbjct: 491 EEK-RFSPDERTVACVLPACASLSAFDKGREI-HGYIMRNGYFSDRHVANSLVDMYAKCG 548
Query: 366 LVDRAYEIIKEMPMRPTISVWGALLNACRVYG 397
+ A+ + ++ + +S W ++ ++G
Sbjct: 549 ALLLAHMLFDDIASKDLVS-WTVMIAGYGMHG 579
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 181/366 (49%), Gaps = 12/366 (3%)
Query: 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVL 88
GK++ +G + D +G MY+ G +A ++FDE+ WN ++
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAK 172
Query: 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV 148
G +I F + +G E D TF + S + G QLHGF+++SGF SV
Sbjct: 173 SGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSV 232
Query: 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGV 208
N LV FY K V A+ VFD + +++ +SW S++ YV N E G +F+ G+
Sbjct: 233 GNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI 292
Query: 209 EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEI 268
E I SV + CA + LGR+VH++ VKAC + L+DMY KCG + A+
Sbjct: 293 EIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 352
Query: 269 AFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV-PNYVTLVCVLSACSR 327
F +M +R++V + ++I GYA +G A A+ FEEM E + P+ T+ VL+ C+R
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE---EGISPDVYTVTAVLNCCAR 409
Query: 328 AGAVEKGMKI---FYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTIS 384
+++G ++ L + I ++D+ + G + A + EM ++ IS
Sbjct: 410 YRLLDEGKRVHEWIKENDLGFDIFVS----NALMDMYAKCGSMQEAELVFSEMRVKDIIS 465
Query: 385 VWGALL 390
W ++
Sbjct: 466 -WNTII 470
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 13/341 (3%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M E ISP+ +T + + + GK++H ++ D+FV + DMY+K G
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 447
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKN-----AIDAF-INLRRTGGEPDLITF 114
+A+ +F EM +++ +W N ++GG KN A+ F + L PD T
Sbjct: 448 MQEAELVFSEMRVKDIISW-----NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 502
Query: 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID 174
L AC+ S GR++HG+++R+G+ + V N LVD Y KC + LA ++FD I
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 562
Query: 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSV 234
K+ VSW M+ Y + + +F R+ G+E + S+L AC+ ++ G
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622
Query: 235 HAVAVKAC-VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQG 292
+ C +E + + +VDM + G + A MP + W A++ G
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHH 682
Query: 293 HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333
+A E++ + E YV + + + + V++
Sbjct: 683 DVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKR 723
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 158/373 (42%), Gaps = 44/373 (11%)
Query: 110 DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVF 169
D T C+ L C+D L+ G+++ F+ +GF + ++ + L Y C ++ A VF
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152
Query: 170 DGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229
D + + + W ++ ++ + +F GVE + S V + + + +
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212
Query: 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYA 289
G +H +K+ VG++LV Y K + A F++M ER+++ WN+II GY
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272
Query: 290 HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP 349
G A+ LS F +M E + T+V V + C+ + + G + +S+ +K
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEI--DLATIVSVFAGCADSRLISLGRAV-HSIGVKACFSR 329
Query: 350 GAEHYACVVDLLGRAGLVDRAYEIIKEMPMR----------------------------- 380
++D+ + G +D A + +EM R
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389
Query: 381 -----PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN----MFAATG 431
P + A+LN C Y + G+ + + ND G + +SN M+A G
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHE---WIKENDLGFDIFVSNALMDMYAKCG 446
Query: 432 RWEEADLVRKEMK 444
+EA+LV EM+
Sbjct: 447 SMQEAELVFSEMR 459
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/597 (37%), Positives = 326/597 (54%), Gaps = 16/597 (2%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M R+ I PN+FTF KA L+ G Q+H LK G V VG S DMYSK G
Sbjct: 98 MGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGR 157
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTG--GEPDLITFCAFL 118
++A+K+F + +R+L +WNA I+ V G A+D F ++ PD T + L
Sbjct: 158 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 217
Query: 119 NACSDCSLLQLGRQLHGFLVRSGFD--GNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKN 176
ACS ++ G+Q+HGFLVRSGF + ++ LVD Y KC + A+ FD I +K
Sbjct: 218 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 277
Query: 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236
+SW S+++ Y Q E +F + + F +SS++ A A L G+ + A
Sbjct: 278 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 337
Query: 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADM 296
+AVK V +++VDMY KCG + +AE F +M ++++ W +I GY G
Sbjct: 338 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 397
Query: 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYAC 356
++ F EM +R P+ V + VLSACS +G +++G ++F + +GIKP EHYAC
Sbjct: 398 SVRIFYEM--LRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYAC 455
Query: 357 VVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416
VVDLLGRAG + A +I MP++P + +W LL+ CRV+G ELG+ L ++D +
Sbjct: 456 VVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKN 515
Query: 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERN 476
N+V++SN++ G W E R+ G+KK AG SW+ ++ +H F++ + SH
Sbjct: 516 PANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLT 575
Query: 477 TEIQAMLT----KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIA-- 530
IQ L +LREE+ GY+ L+D+++E K + HSEK+A+ L
Sbjct: 576 PVIQETLKEAERRLREEL---GYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGG 632
Query: 531 -IPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
G IR+ KNLR+C DCH K +S I +VRD RFH F DG CSC DYW
Sbjct: 633 LNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 212/433 (48%), Gaps = 22/433 (5%)
Query: 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVL 88
G Q+H LKSG ++ DMY K A K+FD MPERN+ +W+A +S VL
Sbjct: 25 GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVL 84
Query: 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV 148
G K ++ F + R G P+ TF L AC + L+ G Q+HGF ++ GF+ V V
Sbjct: 85 NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144
Query: 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGV 208
N LVD Y KC + A+ VF I+D++ +SW +M+ +V F + +
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANI 204
Query: 209 E--PKDFMISSVLSACARIAGLELGRSVHAVAVKA---CVEGNIFVGSALVDMYGKCGSI 263
+ P +F ++S+L AC+ + G+ +H V++ C GS LVD+Y KCG +
Sbjct: 205 KERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGS-LVDLYVKCGYL 263
Query: 264 QDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323
A AF+++ E+ ++ W+++I GYA +G A+ F+ + + + + L ++
Sbjct: 264 FSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI--DSFALSSIIG 321
Query: 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA--CVVDLLGRAGLVDRAYEIIKEMPMRP 381
+ + +G ++ L + G E VVD+ + GLVD A + EM ++
Sbjct: 322 VFADFALLRQGKQM---QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKD 378
Query: 382 TISVWGALLNACRVYGKPELGRIAADNLFKL-----DPNDSGNHVLLSNMFAATGRWEEA 436
IS W ++ YGK LG+ + +++ +P++ +LS + E
Sbjct: 379 VIS-WTVVITG---YGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE 434
Query: 437 DLVRKEMKDVGIK 449
+L K ++ GIK
Sbjct: 435 ELFSKLLETHGIK 447
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 4/280 (1%)
Query: 113 TFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172
+ L C+ L G Q+H +L++SG N+ N L+D Y KC E +A VFD +
Sbjct: 8 NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67
Query: 173 IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGR 232
++N VSW +++ +V N + + +F R+G+ P +F S+ L AC + LE G
Sbjct: 68 PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGL 127
Query: 233 SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG 292
+H +K E + VG++LVDMY KCG I +AE F ++ +R+L+ WNA+I G+ H G
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAG 187
Query: 293 HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK--PG 350
+ AL +F M + P+ TL +L ACS G + G +I + ++ G
Sbjct: 188 YGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQI-HGFLVRSGFHCPSS 246
Query: 351 AEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALL 390
A +VDL + G + A + ++ + IS W +L+
Sbjct: 247 ATITGSLVDLYVKCGYLFSARKAFDQIKEKTMIS-WSSLI 285
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/526 (39%), Positives = 311/526 (59%), Gaps = 11/526 (2%)
Query: 62 DDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC 121
+ A FD MP ++ A+WN I+ G + A + F ++ E + +++ A ++
Sbjct: 141 EKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM----EKNEVSWNAMISGY 196
Query: 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVF-DGIIDKNDVSW 180
+C L+ G V ++ Y K +V LA+ +F D ++KN V+W
Sbjct: 197 IECGDLEKASHFFKVAPVRG----VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+ YV+N E+G ++F EG+ P +SS L C+ ++ L+LGR +H + K
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSS 300
+ + ++ ++L+ MY KCG + DA F M ++++V WNA+I GYA G+AD AL
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 372
Query: 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360
F EM + P+++T V VL AC+ AG V GM F SM Y ++P +HY C+VDL
Sbjct: 373 FREMIDNKIR--PDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDL 430
Query: 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420
LGRAG ++ A ++I+ MP RP +V+G LL ACRV+ EL AA+ L +L+ ++ +
Sbjct: 431 LGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGY 490
Query: 421 VLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480
V L+N++A+ RWE+ VRK MK+ + K G SWI ++N++H F++ D H I
Sbjct: 491 VQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIH 550
Query: 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRIT 540
L +L ++MK AGY P+ FAL++VEEE+K + HSEK+A+AFG I +P G I++
Sbjct: 551 KKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVF 610
Query: 541 KNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KNLRICGDCH A KFIS I RE+IVRD RFH F DG CSC DYW
Sbjct: 611 KNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 36/287 (12%)
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF 114
Y + +D K+F M E + ++ +S+A+LG
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLG------------------------- 293
Query: 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID 174
CS+ S LQLGRQ+H + +S +V+ L+ Y KC E+G A +F+ +
Sbjct: 294 ------CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKK 347
Query: 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSV 234
K+ V+W +M+ Y Q+ + +F + P +VL AC + +G +
Sbjct: 348 KDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAY 407
Query: 235 HAVAVKAC-VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER-NLVCWNAIIGGYAHQG 292
V+ VE + +VD+ G+ G +++A MP R + + ++G
Sbjct: 408 FESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHK 467
Query: 293 HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR---AGAVEKGMK 336
+ ++A + E++ + + YV L + ++ +R V K MK
Sbjct: 468 NVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMK 514
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 61/139 (43%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M E I PN S L G+Q+H + KS +DV S MY K G
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGE 334
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
DA K+F+ M ++++ WNA IS G A+ F + PD ITF A L A
Sbjct: 335 LGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA 394
Query: 121 CSDCSLLQLGRQLHGFLVR 139
C+ L+ +G +VR
Sbjct: 395 CNHAGLVNIGMAYFESMVR 413
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 40/276 (14%)
Query: 104 RTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVG 163
R+ G PD I + ++ L R +L + + N ++ + ++
Sbjct: 21 RSIGNPDTILVESCSSSSCSSPEPSLVRS--DYLTKPSDQDQIFPLNKIIARCVRSGDID 78
Query: 164 LAKVVFDGIIDKNDVSWCSMLVVYVQNYEE-ENGCQMFLTARREGVEPKDFMISSVLSAC 222
A VF G+ KN ++W S+L+ ++ Q+F E EP F + +LS
Sbjct: 79 GALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF----DEIPEPDTFSYNIMLSCY 134
Query: 223 ARIAGLELGRS----------------VHAVAVK-----------ACVEGNIFVGSALVD 255
R E +S + A + + +E N +A++
Sbjct: 135 VRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMIS 194
Query: 256 MYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315
Y +CG ++ A F P R +V W A+I GY ++A + F++MT + N
Sbjct: 195 GYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNK-----NL 249
Query: 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351
VT ++S E G+K+F +M L+ GI+P +
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAM-LEEGIRPNS 284
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 244 EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303
E + F + ++ Y + + + A+ F++MP ++ WN +I GYA +G + A F
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180
Query: 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363
M N V+ ++S G +EK F ++ G + ++ +
Sbjct: 181 MME------KNEVSWNAMISGYIECGDLEKASHFFKVAPVR-----GVVAWTAMITGYMK 229
Query: 364 AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK--LDPNDSG 418
A V+ A + K+M + + W A+++ +PE G + + + PN SG
Sbjct: 230 AKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/611 (35%), Positives = 322/611 (52%), Gaps = 43/611 (7%)
Query: 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDD----ADKM 67
T CL + S + KQ+HA LK+G + D + + F + + D A +
Sbjct: 17 TMSCLQRCSKQEEL----KQIHARMLKTGLMQDSY-AITKFLSFCISSTSSDFLPYAQIV 71
Query: 68 FDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127
FD + WN I P+ ++ + + + + TF + L ACS+ S
Sbjct: 72 FDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAF 131
Query: 128 QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI--------------- 172
+ Q+H + + G++ +V N L++ Y LA ++FD I
Sbjct: 132 EETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGY 191
Query: 173 ----------------IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS 216
+KN +SW +M+ YVQ + Q+F + VEP + ++
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLA 251
Query: 217 SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276
+ LSACA++ LE G+ +H+ K + + +G L+DMY KCG +++A F + ++
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKK 311
Query: 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMK 336
++ W A+I GYA+ GH A+S F EM M + PN +T VL+ACS G VE+G
Sbjct: 312 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIK--PNVITFTAVLTACSYTGLVEEGKL 369
Query: 337 IFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVY 396
IFYSM Y +KP EHY C+VDLLGRAGL+D A I+EMP++P +WGALL ACR++
Sbjct: 370 IFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 429
Query: 397 GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSW 456
ELG + L +DP G +V +N+ A +W++A R+ MK+ G+ K GCS
Sbjct: 430 KNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCST 489
Query: 457 ISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYD-VEEEEKMTEV 515
IS++ H F A D SH +IQ+ +R +++ GY+P+ L D V+++E+ V
Sbjct: 490 ISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIV 549
Query: 516 GHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNNRFHRF 575
HSEK+A+ +GLI PG IRI KNLR+C DCH K IS I R++++RD RFH F
Sbjct: 550 HQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHF 609
Query: 576 WDGYCSCSDYW 586
DG CSC DYW
Sbjct: 610 RDGKCSCGDYW 620
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 33/310 (10%)
Query: 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMF 68
N +TFP L KA S L Q+HA K G +DV+ S + Y+ TG A +F
Sbjct: 114 NAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLF 173
Query: 69 DEMPERNLATWNAYISNAVLGGR-------------------------------PKNAID 97
D +PE + +WN+ I V G+ K A+
Sbjct: 174 DRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQ 233
Query: 98 AFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYG 157
F ++ + EPD ++ L+AC+ L+ G+ +H +L ++ + + L+D Y
Sbjct: 234 LFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYA 293
Query: 158 KCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISS 217
KC E+ A VF I K+ +W +++ Y + F+ ++ G++P ++
Sbjct: 294 KCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTA 353
Query: 218 VLSACARIAGLELGRSV-HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276
VL+AC+ +E G+ + +++ ++ I +VD+ G+ G + +A+ +MP +
Sbjct: 354 VLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK 413
Query: 277 -NLVCWNAII 285
N V W A++
Sbjct: 414 PNAVIWGALL 423
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 2/186 (1%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
M+ + P++ + A + L GK +H+ K+ D +GC DMY+K G
Sbjct: 238 MQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGE 297
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
++A ++F + ++++ W A IS G + AI F+ +++ G +P++ITF A L A
Sbjct: 298 MEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTA 357
Query: 121 CSDCSLLQLGRQLHGFLVRS-GFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI-IDKNDV 178
CS L++ G+ + + R + +VD G+ + AK + + N V
Sbjct: 358 CSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417
Query: 179 SWCSML 184
W ++L
Sbjct: 418 IWGALL 423
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/616 (36%), Positives = 327/616 (53%), Gaps = 41/616 (6%)
Query: 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMF 68
+ F+F + KA S + G +LH +A K + D FV DMY+ G + A +F
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVF 169
Query: 69 DEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQ 128
DEM R++ TWN I G A F ++ + PD + C ++AC ++
Sbjct: 170 DEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR 229
Query: 129 LGRQLHGFLV---------------------------RSGFDG----NVSVCNGLVDFYG 157
R ++ FL+ R F N+ V +V Y
Sbjct: 230 YNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYS 289
Query: 158 KCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISS 217
KC + A+V+FD K+ V W +M+ YV++ + ++F G++P + S
Sbjct: 290 KCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFS 349
Query: 218 VLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN 277
V+SACA + L+ + VH+ +E + + +AL++MY KCG + F KMP RN
Sbjct: 350 VISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN 409
Query: 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKI 337
+V W+++I + G A ALS F M E PN VT V VL CS +G VE+G KI
Sbjct: 410 VVSWSSMINALSMHGEASDALSLFARMKQENVE--PNEVTFVGVLYGCSHSGLVEEGKKI 467
Query: 338 FYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYG 397
F SMT +Y I P EHY C+VDL GRA L+ A E+I+ MP+ + +WG+L++ACR++G
Sbjct: 468 FASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHG 527
Query: 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWI 457
+ ELG+ AA + +L+P+ G VL+SN++A RWE+ +R+ M++ + K G S I
Sbjct: 528 ELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587
Query: 458 SVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGH 517
+ H F D H+++ EI A L ++ ++K AGY+PD L DVEEEEK V
Sbjct: 588 DQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLW 647
Query: 518 HSEKIALAFGLIAIPP-------GVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNN 570
HSEK+AL FGL+ GV IRI KNLR+C DCH FK +S + RE+IVRD
Sbjct: 648 HSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRT 706
Query: 571 RFHRFWDGYCSCSDYW 586
RFH + +G CSC DYW
Sbjct: 707 RFHCYKNGLCSCRDYW 722
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 193/425 (45%), Gaps = 46/425 (10%)
Query: 30 KQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLA-TWNAYISNAVL 88
KQLHA L++ H + + S + A +F +P + +N ++ +
Sbjct: 29 KQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSR 88
Query: 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV 148
P+ I + +R GG D +F L A S S L G +LHG + + V
Sbjct: 89 SSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFV 148
Query: 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGV 208
G +D Y C + A+ VFD + ++ V+W +M+ Y + + ++F + V
Sbjct: 149 ETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNV 208
Query: 209 EPKDFMISSVLSACARIAGLELGRSVHAVAVK--------------------ACVE---- 244
P + ++ +++SAC R + R+++ ++ C++
Sbjct: 209 MPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMARE 268
Query: 245 -------GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297
N+FV +A+V Y KCG + DA++ F++ +++LVCW +I Y + A
Sbjct: 269 FFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEA 328
Query: 298 LSSFEEMTSMRCEAV-PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYAC 356
L FEEM C + P+ V++ V+SAC+ G ++K K +S G++
Sbjct: 329 LRVFEEMC---CSGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNA 384
Query: 357 VVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE-----LGRIAADNLFK 411
++++ + G +D ++ ++MP R +S W +++NA ++G+ R+ +N
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVS-WSSMINALSMHGEASDALSLFARMKQEN--- 440
Query: 412 LDPND 416
++PN+
Sbjct: 441 VEPNE 445
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 87/181 (48%), Gaps = 2/181 (1%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
I P+ + + A + L I K +H+ +G ++ + + +MY+K G D
Sbjct: 340 IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399
Query: 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS 125
+F++MP RN+ +W++ I+ + G +A+ F +++ EP+ +TF L CS
Sbjct: 400 DVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSG 459
Query: 126 LLQLGRQLHGFLV-RSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI-IDKNDVSWCSM 183
L++ G+++ + + +VD +G+ N + A V + + + N V W S+
Sbjct: 460 LVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSL 519
Query: 184 L 184
+
Sbjct: 520 M 520
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/564 (37%), Positives = 318/564 (56%), Gaps = 37/564 (6%)
Query: 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF 114
Y+ G + +F + + +L + A I+ A + G A ++ L + P+ TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEV------------ 162
+ L +CS S G+ +H +++ G + V GLVD Y K +V
Sbjct: 134 SSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189
Query: 163 -------------------GLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTA 203
A+ +FD + +++ VSW M+ Y Q+ + +F
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 204 RREG-VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS 262
EG +P + + + LSAC++I LE GR +H + + N+ V + L+DMY KCGS
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309
Query: 263 IQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322
+++A + FN P +++V WNA+I GYA G++ AL F EM + P +T + L
Sbjct: 310 LEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGI-TGLQPTDITFIGTL 368
Query: 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPT 382
AC+ AG V +G++IF SM +YGIKP EHY C+V LLGRAG + RAYE IK M M
Sbjct: 369 QACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDAD 428
Query: 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442
+W ++L +C+++G LG+ A+ L L+ +SG +VLLSN++A+ G +E VR
Sbjct: 429 SVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNL 488
Query: 443 MKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFA 502
MK+ GI K G S I ++N++H F+A D H ++ EI ML K+ E +K+ GY+P+TN
Sbjct: 489 MKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTV 548
Query: 503 LYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGR 562
L D+EE EK + HSE++A+A+GLI+ PG P++I KNLR+C DCH+ K IS I GR
Sbjct: 549 LQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGR 608
Query: 563 EVIVRDNNRFHRFWDGYCSCSDYW 586
++++RD NRFH F DG CSC D+W
Sbjct: 609 KIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 145/317 (45%), Gaps = 41/317 (12%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
I+PN+FTF L K+ S +GK +H LK G D +V D+Y+K G A
Sbjct: 126 INPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQ 181
Query: 66 KMFDEMPERNLAT-------------------------------WNAYISNAVLGGRPKN 94
K+FD MPER+L + WN I G P +
Sbjct: 182 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPND 241
Query: 95 AIDAFINLRRTGG-EPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLV 153
A+ F L G +PD IT A L+ACS L+ GR +H F+ S NV VC GL+
Sbjct: 242 ALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLI 301
Query: 154 DFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARR-EGVEPKD 212
D Y KC + A +VF+ K+ V+W +M+ Y + ++ ++F + G++P D
Sbjct: 302 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 213 FMISSVLSACARIAGL--ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA-EIA 269
L ACA AGL E R ++ + ++ I LV + G+ G ++ A E
Sbjct: 362 ITFIGTLQACAH-AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420
Query: 270 FNKMPERNLVCWNAIIG 286
N + + V W++++G
Sbjct: 421 KNMNMDADSVLWSSVLG 437
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/574 (38%), Positives = 325/574 (56%), Gaps = 8/574 (1%)
Query: 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERN 75
L +ASS+ P K++HA+ L++G + + G A ++FDEM +
Sbjct: 16 LLRASSSK--PKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPR 73
Query: 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHG 135
+ WN V P ++ + +R G PD T+ + A S G LH
Sbjct: 74 IFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHA 133
Query: 136 FLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEEN 195
+V+ GF V LV Y K E+ A+ +F+ + K+ V+W + L V VQ
Sbjct: 134 HVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAI 193
Query: 196 GCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVD 255
+ F + V+ F + S+LSAC ++ LE+G ++ A K ++ NI V +A +D
Sbjct: 194 ALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLD 253
Query: 256 MYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV-PN 314
M+ KCG+ + A + F +M +RN+V W+ +I GYA G + AL+ F T+M+ E + PN
Sbjct: 254 MHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLF---TTMQNEGLRPN 310
Query: 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLK--YGIKPGAEHYACVVDLLGRAGLVDRAYE 372
YVT + VLSACS AG V +G + F M ++P EHYAC+VDLLGR+GL++ AYE
Sbjct: 311 YVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYE 370
Query: 373 IIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432
IK+MP+ P +WGALL AC V+ LG+ AD L + P+ HVLLSN++AA G+
Sbjct: 371 FIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGK 430
Query: 433 WEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKA 492
W+ D VR +M+ +G KK A S + + +IH F D SH ++ I L ++ ++++
Sbjct: 431 WDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRK 490
Query: 493 AGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSA 552
GY+PDT +DVE EEK + HHSEK+A+AFGLI PG PIR+ KNLR C DCH+
Sbjct: 491 MGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAF 550
Query: 553 FKFISGIVGREVIVRDNNRFHRFWDGYCSCSDYW 586
KF+S + E+I+RD NRFH F +G CSC ++W
Sbjct: 551 SKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 190/419 (45%), Gaps = 30/419 (7%)
Query: 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGL 60
MR + P++FT+P + KA S L G LHA +K G V MY K G
Sbjct: 100 MRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGE 159
Query: 61 KDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120
A+ +F+ M ++L WNA+++ V G A++ F + + D T + L+A
Sbjct: 160 LSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSA 219
Query: 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW 180
C L++G +++ + D N+ V N +D + KC A+V+F+ + +N VSW
Sbjct: 220 CGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSW 279
Query: 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240
+M+V Y N + +F T + EG+ P VLSAC+ + G+ ++ V+
Sbjct: 280 STMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQ 339
Query: 241 A---CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-ERNLVCWNAIIGGYAHQGHADM 296
+ +E + +VD+ G+ G +++A KMP E + W A++G A H DM
Sbjct: 340 SNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACA--VHRDM 397
Query: 297 ALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE 352
L +++ + E P+ +V L + +A + V+K S K G K A
Sbjct: 398 ILG--QKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDK----VRSKMRKLGTKKVAA 451
Query: 353 HYACVVDLLGRAGLVDRA----------YEIIKEMPMRPTISVWGALLNACRVYGKPEL 401
+ + V+ G+ +R YE + E+ + I G + + C V+ E+
Sbjct: 452 YSS--VEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKK--IRKMGYVPDTCSVFHDVEM 506
>sp|Q8VYH0|PP313_ARATH Pentatricopeptide repeat-containing protein At4g15720
OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1
Length = 616
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 221/568 (38%), Positives = 321/568 (56%), Gaps = 15/568 (2%)
Query: 32 LHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGR 91
LH L LK G D F Y K + A K+FDEM E N+ +W + IS G+
Sbjct: 51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110
Query: 92 PKNAIDAFINLRRTGG-EPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150
P+NA+ F + P+ TF + ACS + ++G+ +H L SG N+ V +
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSS 170
Query: 151 GLVDFYGKCNEVGLAKVVFDGIID--KNDVSWCSMLVVYVQNYEEENGCQMF--LTARRE 206
LVD YGKCN+V A+ VFD +I +N VSW SM+ Y QN ++F A
Sbjct: 171 SLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALT 230
Query: 207 GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266
FM++SV+SAC+ + L+ G+ H + + E N V ++L+DMY KCGS+ A
Sbjct: 231 SDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCA 290
Query: 267 EIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326
E F ++ +++ + ++I A G + A+ F+EM + R PNYVTL+ VL ACS
Sbjct: 291 EKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRIN--PNYVTLLGVLHACS 348
Query: 327 RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIK--EMPMRPTIS 384
+G V +G++ M KYG+ P + HY CVVD+LGR G VD AYE+ K E+
Sbjct: 349 HSGLVNEGLEYLSLMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGAL 408
Query: 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444
+WGALL+A R++G+ E+ A+ L + + + ++ LSN +A +G WE+++ +R EMK
Sbjct: 409 LWGALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMK 468
Query: 445 DVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGY------IPD 498
G K CSWI K+ +++F A D S + + EI+ L L + MK G+ I
Sbjct: 469 RSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITT 528
Query: 499 TNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISG 558
++ DV+EE K V H E++ALA+GL+ +P G IRI NLR+C DCH AFK IS
Sbjct: 529 SSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISE 588
Query: 559 IVGREVIVRDNNRFHRFWDGYCSCSDYW 586
IV RE++VRD NRFH F +G C+C DYW
Sbjct: 589 IVEREIVVRDVNRFHCFKNGSCTCRDYW 616
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 157/359 (43%), Gaps = 15/359 (4%)
Query: 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDAD 65
+ PN++TF +FKA SAL GK +HA SG ++ V S DMY K + A
Sbjct: 127 VPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETAR 186
Query: 66 KMFDEMP--ERNLATWNAYISNAVLGGRPKNAIDAF--INLRRTGGEPDLITFCAFLNAC 121
++FD M RN+ +W + I+ R AI+ F N T + + ++AC
Sbjct: 187 RVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISAC 246
Query: 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWC 181
S LQ G+ HG + R G++ N V L+D Y KC + A+ +F I + +S+
Sbjct: 247 SSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYT 306
Query: 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG-RSVHAVAVK 240
SM++ ++ E ++F + P + VL AC+ + G + +A K
Sbjct: 307 SMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEK 366
Query: 241 ACVEGNIFVGSALVDMYGKCGSIQDA-EIA--FNKMPERNLVCWNAIIGGYAHQGHADMA 297
V + + +VDM G+ G + +A E+A E+ + W A++ G ++
Sbjct: 367 YGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLHGRVEIV 426
Query: 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYAC 356
+ + + + Y+ L S A AV G + S+ L+ + AC
Sbjct: 427 SEASKRLIQSNQQVTSAYIAL-------SNAYAVSGGWEDSESLRLEMKRSGNVKERAC 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,094,014
Number of Sequences: 539616
Number of extensions: 9590986
Number of successful extensions: 25503
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 20321
Number of HSP's gapped (non-prelim): 1837
length of query: 586
length of database: 191,569,459
effective HSP length: 123
effective length of query: 463
effective length of database: 125,196,691
effective search space: 57966067933
effective search space used: 57966067933
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)