Query 007881
Match_columns 586
No_of_seqs 807 out of 4258
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 16:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 8E-122 2E-126 991.1 65.4 580 5-586 118-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-117 3E-122 980.1 63.7 579 1-584 279-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 8.3E-75 1.8E-79 640.3 44.9 570 1-579 77-677 (857)
4 PLN03218 maturation of RBCL 1; 100.0 8.9E-65 1.9E-69 550.0 52.8 528 6-564 366-911 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6.7E-64 1.4E-68 543.2 57.0 441 8-453 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7.6E-61 1.6E-65 517.0 43.0 488 74-580 85-582 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-27 1.1E-31 264.8 49.4 425 12-448 433-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-26 3.2E-31 261.0 49.5 426 9-446 396-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.4E-30 3E-35 207.8 7.1 106 453-576 2-116 (116)
10 KOG4626 O-linked N-acetylgluco 99.9 4E-21 8.7E-26 185.9 28.9 377 46-435 117-508 (966)
11 PRK11447 cellulose synthase su 99.9 5.1E-19 1.1E-23 201.3 49.3 416 18-450 277-745 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 9.4E-21 2E-25 183.4 29.4 358 75-446 115-485 (966)
13 PRK11447 cellulose synthase su 99.9 1.2E-18 2.5E-23 198.3 47.7 416 16-445 118-665 (1157)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-18 5.4E-23 183.8 42.5 414 17-446 134-571 (615)
15 PRK11788 tetratricopeptide rep 99.9 1.5E-19 3.3E-24 183.2 29.9 288 157-453 46-354 (389)
16 PRK11788 tetratricopeptide rep 99.9 1.3E-19 2.9E-24 183.7 28.1 282 87-377 46-344 (389)
17 PRK15174 Vi polysaccharide exp 99.9 1.5E-17 3.3E-22 177.1 40.7 366 57-445 17-402 (656)
18 PRK10049 pgaA outer membrane p 99.8 1.5E-16 3.3E-21 173.1 45.3 396 13-417 18-461 (765)
19 PRK10049 pgaA outer membrane p 99.8 1.6E-16 3.4E-21 173.1 42.6 398 42-446 12-456 (765)
20 PRK09782 bacteriophage N4 rece 99.8 5.4E-16 1.2E-20 169.1 46.1 213 226-447 490-707 (987)
21 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.3E-21 170.7 37.5 321 50-382 47-384 (656)
22 PRK14574 hmsH outer membrane p 99.8 6E-15 1.3E-19 157.7 45.1 420 20-446 44-513 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.2E-14 2.6E-19 158.6 45.3 427 8-448 179-742 (987)
24 TIGR00990 3a0801s09 mitochondr 99.8 4.6E-15 9.9E-20 158.7 37.4 354 79-446 130-537 (615)
25 KOG4422 Uncharacterized conser 99.7 2.4E-13 5.3E-18 127.1 37.3 392 11-413 117-591 (625)
26 PRK14574 hmsH outer membrane p 99.7 3E-13 6.5E-18 144.9 42.2 385 53-446 42-479 (822)
27 KOG2002 TPR-containing nuclear 99.7 2.4E-13 5.3E-18 139.5 34.1 430 9-446 269-745 (1018)
28 KOG2003 TPR repeat-containing 99.6 4E-13 8.6E-18 126.4 26.1 409 16-432 207-709 (840)
29 KOG2002 TPR-containing nuclear 99.6 3.7E-12 8.1E-17 131.0 33.2 433 5-448 196-677 (1018)
30 PF13429 TPR_15: Tetratricopep 99.6 4E-15 8.7E-20 143.0 11.4 256 184-445 15-276 (280)
31 KOG2076 RNA polymerase III tra 99.6 1.2E-11 2.6E-16 126.5 33.9 318 124-445 152-511 (895)
32 KOG4422 Uncharacterized conser 99.6 6.1E-11 1.3E-15 111.3 35.1 349 9-377 206-587 (625)
33 KOG0495 HAT repeat protein [RN 99.6 5.8E-10 1.3E-14 110.2 42.7 425 18-457 384-855 (913)
34 PRK10747 putative protoheme IX 99.5 1.6E-11 3.6E-16 123.5 30.3 285 89-412 97-390 (398)
35 KOG4318 Bicoid mRNA stability 99.5 1.5E-11 3.2E-16 125.1 28.6 422 1-450 16-598 (1088)
36 KOG2076 RNA polymerase III tra 99.5 2.4E-10 5.2E-15 117.2 37.2 349 19-373 148-548 (895)
37 KOG0495 HAT repeat protein [RN 99.5 2.2E-09 4.8E-14 106.2 42.0 430 16-461 412-893 (913)
38 KOG0547 Translocase of outer m 99.5 9E-11 1.9E-15 112.1 31.0 214 224-445 338-565 (606)
39 PRK10747 putative protoheme IX 99.5 4.5E-11 9.8E-16 120.3 30.7 275 159-445 97-389 (398)
40 TIGR00540 hemY_coli hemY prote 99.5 1.5E-10 3.3E-15 117.2 33.0 223 184-411 160-398 (409)
41 KOG1155 Anaphase-promoting com 99.5 9.6E-10 2.1E-14 104.6 35.2 314 121-445 174-494 (559)
42 PF13429 TPR_15: Tetratricopep 99.5 2.8E-13 6.1E-18 130.2 12.1 254 83-342 15-275 (280)
43 KOG1126 DNA-binding cell divis 99.5 1.4E-11 3.1E-16 122.2 23.1 275 161-447 334-621 (638)
44 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.5E-15 109.7 28.8 249 186-444 271-534 (559)
45 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.4E-15 118.3 30.2 292 79-377 85-396 (409)
46 KOG1126 DNA-binding cell divis 99.5 2E-11 4.3E-16 121.2 23.0 244 191-445 333-585 (638)
47 KOG1173 Anaphase-promoting com 99.4 2E-09 4.3E-14 105.0 32.6 419 13-445 19-517 (611)
48 KOG2003 TPR repeat-containing 99.4 1.1E-09 2.3E-14 103.7 29.5 392 48-446 204-689 (840)
49 KOG1915 Cell cycle control pro 99.4 7.1E-09 1.5E-13 98.9 34.9 370 13-391 110-548 (677)
50 KOG1915 Cell cycle control pro 99.4 1E-08 2.2E-13 97.8 35.5 382 57-448 85-502 (677)
51 COG2956 Predicted N-acetylgluc 99.4 6E-10 1.3E-14 101.2 25.8 264 89-392 48-324 (389)
52 PF13041 PPR_2: PPR repeat fam 99.4 1.5E-12 3.2E-17 88.1 5.9 50 74-123 1-50 (50)
53 TIGR02521 type_IV_pilW type IV 99.4 2.2E-10 4.7E-15 106.9 22.4 197 246-445 30-231 (234)
54 KOG4318 Bicoid mRNA stability 99.3 4.9E-11 1.1E-15 121.5 17.4 272 198-511 11-283 (1088)
55 COG3071 HemY Uncharacterized e 99.3 1.4E-08 3.1E-13 95.3 32.3 295 81-412 87-390 (400)
56 KOG1174 Anaphase-promoting com 99.3 4.1E-08 8.8E-13 92.3 32.7 365 47-419 99-507 (564)
57 PF13041 PPR_2: PPR repeat fam 99.3 8.1E-12 1.8E-16 84.5 6.2 50 276-327 1-50 (50)
58 COG2956 Predicted N-acetylgluc 99.3 4.5E-09 9.8E-14 95.6 25.3 295 125-453 49-354 (389)
59 KOG0547 Translocase of outer m 99.3 2.7E-08 5.8E-13 95.6 30.4 371 19-413 124-567 (606)
60 KOG1840 Kinesin light chain [C 99.2 5.1E-09 1.1E-13 105.3 25.5 233 213-445 200-478 (508)
61 COG3071 HemY Uncharacterized e 99.2 4.9E-08 1.1E-12 91.8 29.5 276 159-446 97-390 (400)
62 PRK12370 invasion protein regu 99.2 3.1E-09 6.8E-14 111.9 24.7 257 176-447 255-536 (553)
63 TIGR02521 type_IV_pilW type IV 99.2 7.9E-09 1.7E-13 96.3 23.2 161 177-342 31-196 (234)
64 KOG1173 Anaphase-promoting com 99.2 4.6E-08 1E-12 95.7 27.0 279 142-426 240-532 (611)
65 KOG4162 Predicted calmodulin-b 99.1 1.9E-07 4.2E-12 94.7 31.9 399 40-446 318-783 (799)
66 KOG1840 Kinesin light chain [C 99.1 4.2E-08 9.2E-13 98.7 26.8 236 148-411 201-478 (508)
67 PRK11189 lipoprotein NlpI; Pro 99.1 9.2E-09 2E-13 99.2 21.4 211 226-447 40-266 (296)
68 KOG2376 Signal recognition par 99.1 2.6E-06 5.6E-11 84.2 37.1 403 17-442 19-516 (652)
69 KOG2047 mRNA splicing factor [ 99.1 3.7E-06 8E-11 83.8 38.2 429 12-445 104-614 (835)
70 KOG1129 TPR repeat-containing 99.1 4.6E-09 1E-13 95.6 16.6 227 181-446 227-458 (478)
71 PRK12370 invasion protein regu 99.1 1.2E-08 2.5E-13 107.6 22.6 225 211-445 255-501 (553)
72 KOG1156 N-terminal acetyltrans 99.1 3E-06 6.6E-11 84.6 35.0 423 13-448 11-470 (700)
73 PRK11189 lipoprotein NlpI; Pro 99.0 1.5E-07 3.3E-12 90.8 24.2 218 191-418 40-271 (296)
74 KOG2047 mRNA splicing factor [ 99.0 3.9E-05 8.5E-10 76.8 38.1 264 179-446 389-687 (835)
75 PF12569 NARP1: NMDA receptor- 98.9 6E-06 1.3E-10 84.5 33.7 412 18-442 12-516 (517)
76 PF12569 NARP1: NMDA receptor- 98.9 5.5E-07 1.2E-11 91.9 25.9 147 297-448 130-293 (517)
77 KOG1129 TPR repeat-containing 98.9 3.9E-08 8.5E-13 89.6 15.1 222 149-377 226-455 (478)
78 COG3063 PilF Tfp pilus assembl 98.9 1.2E-07 2.5E-12 82.8 17.4 161 281-448 38-204 (250)
79 KOG3785 Uncharacterized conser 98.9 1.8E-06 3.8E-11 79.9 25.2 414 17-450 29-494 (557)
80 KOG3785 Uncharacterized conser 98.9 2.4E-05 5.3E-10 72.6 31.5 407 17-452 64-520 (557)
81 KOG4162 Predicted calmodulin-b 98.9 1.2E-05 2.6E-10 82.1 32.1 402 6-418 319-789 (799)
82 KOG4340 Uncharacterized conser 98.9 1.9E-06 4.2E-11 77.9 23.3 383 48-446 13-443 (459)
83 KOG3616 Selective LIM binding 98.9 4.5E-06 9.7E-11 84.2 28.3 184 188-403 743-928 (1636)
84 KOG1125 TPR repeat-containing 98.9 6.5E-08 1.4E-12 95.1 15.2 218 223-445 296-526 (579)
85 COG3063 PilF Tfp pilus assembl 98.9 1.2E-06 2.6E-11 76.6 21.3 89 182-272 40-128 (250)
86 KOG0548 Molecular co-chaperone 98.8 2.8E-06 6.1E-11 83.2 24.8 216 216-447 228-456 (539)
87 cd05804 StaR_like StaR_like; a 98.8 1.1E-05 2.3E-10 80.8 29.6 257 185-447 51-337 (355)
88 KOG1156 N-terminal acetyltrans 98.8 2.9E-05 6.3E-10 77.8 31.4 352 86-448 51-436 (700)
89 KOG1174 Anaphase-promoting com 98.8 2.3E-05 5E-10 74.3 28.4 249 188-444 207-465 (564)
90 PF04733 Coatomer_E: Coatomer 98.8 3.2E-07 7E-12 87.2 16.2 80 366-445 182-264 (290)
91 PF04733 Coatomer_E: Coatomer 98.8 5.3E-07 1.1E-11 85.7 17.4 160 249-417 104-270 (290)
92 KOG0985 Vesicle coat protein c 98.7 4.1E-05 9E-10 80.2 31.2 365 30-443 967-1367(1666)
93 KOG3616 Selective LIM binding 98.7 9.9E-06 2.1E-10 81.9 25.3 258 153-446 739-1024(1636)
94 cd05804 StaR_like StaR_like; a 98.7 4.4E-05 9.4E-10 76.4 31.0 195 78-274 8-213 (355)
95 KOG1070 rRNA processing protei 98.7 1.3E-06 2.9E-11 94.0 20.4 209 235-450 1447-1667(1710)
96 PRK04841 transcriptional regul 98.7 2.3E-05 5E-10 88.9 31.6 326 122-447 385-761 (903)
97 KOG2376 Signal recognition par 98.6 0.00017 3.6E-09 71.8 31.1 336 83-441 19-400 (652)
98 PF12854 PPR_1: PPR repeat 98.6 4.9E-08 1.1E-12 59.1 4.2 33 242-274 2-34 (34)
99 KOG4340 Uncharacterized conser 98.6 3.8E-06 8.3E-11 76.0 17.5 303 114-442 13-335 (459)
100 KOG0985 Vesicle coat protein c 98.6 0.00011 2.4E-09 77.2 30.2 381 15-443 843-1246(1666)
101 PRK04841 transcriptional regul 98.6 0.00013 2.9E-09 82.7 34.7 361 55-416 351-764 (903)
102 KOG0548 Molecular co-chaperone 98.6 0.00018 3.9E-09 70.9 30.0 394 19-429 11-472 (539)
103 PF12854 PPR_1: PPR repeat 98.6 9E-08 2E-12 58.0 4.4 32 346-377 2-33 (34)
104 KOG1127 TPR repeat-containing 98.6 2.6E-05 5.7E-10 81.7 24.5 383 40-442 486-909 (1238)
105 KOG0624 dsRNA-activated protei 98.6 0.00012 2.6E-09 67.9 26.0 306 81-417 43-375 (504)
106 TIGR03302 OM_YfiO outer membra 98.6 6.2E-06 1.3E-10 77.1 18.2 179 246-446 32-232 (235)
107 KOG0624 dsRNA-activated protei 98.5 0.00023 4.9E-09 66.1 25.1 356 46-445 39-420 (504)
108 KOG3617 WD40 and TPR repeat-co 98.5 0.00092 2E-08 69.1 31.5 84 211-305 911-994 (1416)
109 KOG1127 TPR repeat-containing 98.5 0.0002 4.2E-09 75.5 27.2 421 12-444 494-994 (1238)
110 KOG1125 TPR repeat-containing 98.5 7.5E-06 1.6E-10 81.0 16.2 215 121-342 295-525 (579)
111 PRK15359 type III secretion sy 98.5 7.2E-06 1.6E-10 69.6 14.3 120 299-427 14-136 (144)
112 PRK10370 formate-dependent nit 98.4 2E-05 4.2E-10 70.8 17.4 118 328-447 52-174 (198)
113 PLN02789 farnesyltranstransfer 98.4 9.3E-05 2E-09 71.5 22.6 210 228-443 53-299 (320)
114 TIGR03302 OM_YfiO outer membra 98.4 3.5E-05 7.6E-10 72.0 19.0 60 146-205 33-98 (235)
115 PRK15359 type III secretion sy 98.4 9E-06 1.9E-10 69.0 12.6 107 336-447 14-122 (144)
116 KOG1070 rRNA processing protei 98.4 0.00014 3.1E-09 79.0 23.8 221 108-331 1454-1687(1710)
117 KOG3617 WD40 and TPR repeat-co 98.3 0.00073 1.6E-08 69.8 27.6 187 9-204 756-994 (1416)
118 PRK15179 Vi polysaccharide bio 98.3 4.8E-05 1E-09 81.0 20.3 159 276-447 84-246 (694)
119 PRK10370 formate-dependent nit 98.3 0.0001 2.2E-09 66.3 19.0 155 254-422 23-183 (198)
120 KOG1128 Uncharacterized conser 98.3 0.0001 2.2E-09 75.1 20.1 216 142-377 394-613 (777)
121 PRK15363 pathogenicity island 98.3 2.2E-05 4.8E-10 65.6 12.9 96 351-446 35-132 (157)
122 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3E-11 53.7 4.3 35 77-111 1-35 (35)
123 KOG2053 Mitochondrial inherita 98.3 0.0092 2E-07 62.8 38.8 411 22-452 21-508 (932)
124 KOG1128 Uncharacterized conser 98.3 4E-05 8.6E-10 78.0 16.4 188 243-447 394-583 (777)
125 COG5010 TadD Flp pilus assembl 98.3 8.5E-05 1.8E-09 66.7 16.7 127 319-447 70-198 (257)
126 KOG1914 mRNA cleavage and poly 98.2 0.0074 1.6E-07 59.9 31.3 428 9-443 19-536 (656)
127 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 5E-11 52.6 4.5 35 178-212 1-35 (35)
128 COG5010 TadD Flp pilus assembl 98.2 0.00018 3.9E-09 64.7 17.9 152 284-440 72-225 (257)
129 PLN02789 farnesyltranstransfer 98.2 0.001 2.3E-08 64.3 23.4 222 186-415 46-305 (320)
130 COG4783 Putative Zn-dependent 98.2 0.00038 8.3E-09 68.1 20.0 143 280-446 308-454 (484)
131 PF13812 PPR_3: Pentatricopept 98.1 3.6E-06 7.7E-11 51.4 4.1 34 76-109 1-34 (34)
132 PRK15179 Vi polysaccharide bio 98.1 0.00051 1.1E-08 73.4 22.2 142 243-391 82-230 (694)
133 TIGR02552 LcrH_SycD type III s 98.1 5.8E-05 1.3E-09 63.5 12.5 99 348-446 13-114 (135)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.5E-09 72.3 15.9 123 317-444 171-295 (395)
135 COG4783 Putative Zn-dependent 98.1 0.00041 8.9E-09 67.9 19.1 177 262-445 252-436 (484)
136 KOG3081 Vesicle coat complex C 98.1 0.003 6.6E-08 57.0 22.9 176 233-417 94-276 (299)
137 PRK14720 transcript cleavage f 98.1 0.00039 8.5E-09 75.0 20.6 215 175-428 29-268 (906)
138 PF13812 PPR_3: Pentatricopept 98.1 7.8E-06 1.7E-10 49.8 4.3 33 178-210 2-34 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00016 3.4E-09 71.3 15.5 128 248-381 170-298 (395)
140 PRK14720 transcript cleavage f 98.0 0.0056 1.2E-07 66.4 27.7 81 213-306 117-197 (906)
141 KOG3081 Vesicle coat complex C 97.9 0.0033 7.1E-08 56.8 20.0 159 200-369 96-259 (299)
142 TIGR02552 LcrH_SycD type III s 97.9 0.00038 8.3E-09 58.5 13.9 113 300-418 5-120 (135)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00061 1.3E-08 58.0 15.2 86 291-377 24-111 (145)
144 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.7E-10 47.1 3.6 31 77-107 1-31 (31)
145 PF09976 TPR_21: Tetratricopep 97.8 0.00091 2E-08 56.9 14.6 125 317-443 14-144 (145)
146 KOG1914 mRNA cleavage and poly 97.8 0.046 1E-06 54.5 32.0 397 42-446 17-501 (656)
147 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.6E-10 46.3 3.4 31 178-208 1-31 (31)
148 cd00189 TPR Tetratricopeptide 97.8 0.00029 6.4E-09 54.4 10.6 92 354-445 3-96 (100)
149 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00062 1.3E-08 55.6 12.3 99 320-418 7-111 (119)
150 KOG3060 Uncharacterized conser 97.8 0.0074 1.6E-07 54.2 19.2 167 250-421 55-229 (289)
151 PF12895 Apc3: Anaphase-promot 97.7 4.3E-05 9.3E-10 58.1 4.7 77 365-442 3-83 (84)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00058 1.3E-08 55.7 11.4 96 352-447 3-106 (119)
153 PF13414 TPR_11: TPR repeat; P 97.6 0.00017 3.7E-09 52.3 6.5 64 382-445 2-66 (69)
154 PLN03088 SGT1, suppressor of 97.6 0.0012 2.6E-08 65.3 13.9 99 322-423 9-110 (356)
155 KOG3060 Uncharacterized conser 97.6 0.0095 2.1E-07 53.5 17.3 161 281-447 55-221 (289)
156 PRK10153 DNA-binding transcrip 97.6 0.0026 5.5E-08 65.9 15.9 63 382-445 419-481 (517)
157 PF13432 TPR_16: Tetratricopep 97.5 0.0003 6.6E-09 50.3 6.5 58 389-446 3-60 (65)
158 PRK02603 photosystem I assembl 97.5 0.0016 3.5E-08 57.3 11.7 81 352-432 36-121 (172)
159 CHL00033 ycf3 photosystem I as 97.5 0.0015 3.2E-08 57.3 11.3 94 351-444 35-140 (168)
160 KOG0550 Molecular chaperone (D 97.5 0.004 8.7E-08 59.7 14.4 266 154-447 57-351 (486)
161 PF04840 Vps16_C: Vps16, C-ter 97.5 0.12 2.5E-06 50.1 29.0 104 254-376 184-287 (319)
162 PRK02603 photosystem I assembl 97.4 0.0056 1.2E-07 53.8 14.5 129 278-432 35-166 (172)
163 cd00189 TPR Tetratricopeptide 97.4 0.002 4.2E-08 49.6 10.6 91 281-376 3-93 (100)
164 KOG2041 WD40 repeat protein [G 97.4 0.11 2.4E-06 53.4 24.3 314 58-412 747-1086(1189)
165 KOG0553 TPR repeat-containing 97.4 0.0018 3.8E-08 59.7 10.9 98 325-425 91-191 (304)
166 PF08579 RPM2: Mitochondrial r 97.4 0.0022 4.9E-08 49.8 9.8 80 180-259 28-116 (120)
167 KOG1538 Uncharacterized conser 97.4 0.034 7.3E-07 56.5 20.5 231 114-411 601-845 (1081)
168 PF04840 Vps16_C: Vps16, C-ter 97.4 0.13 2.8E-06 49.8 24.3 113 315-444 177-289 (319)
169 PF14938 SNAP: Soluble NSF att 97.4 0.074 1.6E-06 51.0 22.7 99 180-278 158-268 (282)
170 PLN03088 SGT1, suppressor of 97.4 0.0037 7.9E-08 62.0 13.9 102 284-392 8-112 (356)
171 PF12895 Apc3: Anaphase-promot 97.4 0.00064 1.4E-08 51.6 6.6 81 291-376 2-83 (84)
172 PF08579 RPM2: Mitochondrial r 97.3 0.0033 7.2E-08 48.9 10.0 79 80-158 29-116 (120)
173 COG4700 Uncharacterized protei 97.3 0.04 8.7E-07 47.1 16.6 132 311-445 85-221 (251)
174 PRK15331 chaperone protein Sic 97.3 0.0086 1.9E-07 50.6 12.7 88 358-445 44-133 (165)
175 PF10037 MRP-S27: Mitochondria 97.3 0.0029 6.2E-08 62.9 11.4 119 41-159 62-186 (429)
176 PF14559 TPR_19: Tetratricopep 97.2 0.0005 1.1E-08 49.7 4.4 53 394-446 2-54 (68)
177 KOG0553 TPR repeat-containing 97.2 0.0013 2.8E-08 60.6 7.8 87 359-445 89-177 (304)
178 PF05843 Suf: Suppressor of fo 97.2 0.014 3.1E-07 55.7 15.3 134 279-417 2-141 (280)
179 PF14938 SNAP: Soluble NSF att 97.2 0.028 6E-07 53.9 17.2 92 324-415 123-228 (282)
180 PF10037 MRP-S27: Mitochondria 97.2 0.0071 1.5E-07 60.2 13.2 119 107-225 62-186 (429)
181 PF13432 TPR_16: Tetratricopep 97.2 0.0012 2.7E-08 47.1 6.0 61 357-417 3-65 (65)
182 PF13371 TPR_9: Tetratricopept 97.2 0.0015 3.2E-08 47.9 6.6 58 390-447 2-59 (73)
183 PF05843 Suf: Suppressor of fo 97.1 0.0059 1.3E-07 58.3 11.7 129 316-446 2-136 (280)
184 PRK10153 DNA-binding transcrip 97.1 0.023 5E-07 59.0 16.6 141 275-419 334-489 (517)
185 COG3898 Uncharacterized membra 97.1 0.3 6.5E-06 47.0 25.4 302 60-377 68-389 (531)
186 COG4235 Cytochrome c biogenesi 97.1 0.0062 1.3E-07 56.5 10.8 101 348-448 153-258 (287)
187 KOG2280 Vacuolar assembly/sort 97.1 0.54 1.2E-05 49.2 26.5 103 254-374 691-793 (829)
188 PF14559 TPR_19: Tetratricopep 97.0 0.0012 2.6E-08 47.6 4.8 60 327-389 3-64 (68)
189 PRK15363 pathogenicity island 97.0 0.026 5.5E-07 47.5 13.0 90 180-272 38-128 (157)
190 PF13281 DUF4071: Domain of un 97.0 0.084 1.8E-06 51.5 18.4 160 252-416 146-338 (374)
191 COG4700 Uncharacterized protei 97.0 0.11 2.4E-06 44.5 16.2 98 209-306 86-188 (251)
192 PF06239 ECSIT: Evolutionarily 97.0 0.0071 1.5E-07 53.3 9.5 97 267-366 34-153 (228)
193 KOG2280 Vacuolar assembly/sort 97.0 0.66 1.4E-05 48.6 26.9 319 105-442 426-795 (829)
194 PRK10866 outer membrane biogen 96.9 0.33 7.2E-06 45.2 21.2 61 182-244 37-101 (243)
195 PF12688 TPR_5: Tetratrico pep 96.9 0.018 3.9E-07 46.6 10.8 84 360-443 10-101 (120)
196 KOG1130 Predicted G-alpha GTPa 96.9 0.0092 2E-07 57.2 10.1 130 316-445 196-343 (639)
197 CHL00033 ycf3 photosystem I as 96.8 0.021 4.5E-07 50.0 12.0 80 77-157 36-117 (168)
198 PF13431 TPR_17: Tetratricopep 96.8 0.00096 2.1E-08 40.2 2.2 33 406-438 2-34 (34)
199 PF09205 DUF1955: Domain of un 96.8 0.2 4.3E-06 40.4 16.1 141 288-449 12-152 (161)
200 COG3898 Uncharacterized membra 96.8 0.55 1.2E-05 45.3 24.7 242 188-447 131-393 (531)
201 KOG2796 Uncharacterized conser 96.8 0.071 1.5E-06 48.3 14.5 234 76-319 69-323 (366)
202 PF13414 TPR_11: TPR repeat; P 96.8 0.0038 8.3E-08 45.1 5.7 64 351-414 3-69 (69)
203 PF03704 BTAD: Bacterial trans 96.7 0.02 4.4E-07 48.7 10.8 69 384-452 63-136 (146)
204 PF06239 ECSIT: Evolutionarily 96.7 0.015 3.2E-07 51.4 9.7 88 175-262 45-153 (228)
205 PRK10803 tol-pal system protei 96.7 0.014 3.1E-07 54.7 10.4 92 354-445 146-245 (263)
206 KOG0550 Molecular chaperone (D 96.7 0.71 1.5E-05 44.9 21.1 87 288-377 259-347 (486)
207 PRK10866 outer membrane biogen 96.7 0.079 1.7E-06 49.3 14.9 56 152-207 38-99 (243)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0099 2.2E-07 58.7 9.0 62 351-412 75-141 (453)
209 PF12688 TPR_5: Tetratrico pep 96.6 0.049 1.1E-06 44.1 11.5 90 183-272 7-100 (120)
210 PF12921 ATP13: Mitochondrial 96.6 0.03 6.6E-07 45.8 10.2 97 247-361 2-98 (126)
211 KOG2041 WD40 repeat protein [G 96.6 1.2 2.6E-05 46.3 25.1 56 384-440 1020-1080(1189)
212 KOG1538 Uncharacterized conser 96.5 0.31 6.6E-06 49.9 18.1 222 13-298 601-824 (1081)
213 KOG0543 FKBP-type peptidyl-pro 96.5 0.048 1E-06 52.7 12.1 63 383-445 257-319 (397)
214 PRK10803 tol-pal system protei 96.4 0.045 9.8E-07 51.4 11.7 98 317-417 145-251 (263)
215 PF13525 YfiO: Outer membrane 96.4 0.63 1.4E-05 42.1 18.8 177 183-370 11-197 (203)
216 KOG2796 Uncharacterized conser 96.3 0.17 3.7E-06 45.9 13.9 128 79-206 180-315 (366)
217 PF13428 TPR_14: Tetratricopep 96.3 0.0094 2E-07 38.5 4.5 42 384-425 2-43 (44)
218 PF07079 DUF1347: Protein of u 96.3 1.3 2.9E-05 43.7 33.6 406 21-443 17-521 (549)
219 PF13371 TPR_9: Tetratricopept 96.2 0.022 4.7E-07 41.6 6.8 63 359-421 3-67 (73)
220 PF12921 ATP13: Mitochondrial 96.0 0.083 1.8E-06 43.2 9.9 78 315-392 2-97 (126)
221 KOG2053 Mitochondrial inherita 95.9 3.1 6.7E-05 44.8 40.6 195 11-207 42-256 (932)
222 PF13424 TPR_12: Tetratricopep 95.7 0.018 4E-07 42.7 4.6 23 420-442 49-71 (78)
223 KOG1585 Protein required for f 95.7 1.6 3.4E-05 39.5 17.3 86 354-440 153-250 (308)
224 PF13424 TPR_12: Tetratricopep 95.7 0.022 4.8E-07 42.2 4.9 60 351-410 5-73 (78)
225 COG4235 Cytochrome c biogenesi 95.6 0.23 5E-06 46.3 12.0 97 176-274 155-254 (287)
226 PF13525 YfiO: Outer membrane 95.6 0.41 8.9E-06 43.2 13.7 51 284-334 147-197 (203)
227 KOG1130 Predicted G-alpha GTPa 95.5 0.076 1.7E-06 51.2 8.5 257 85-342 26-342 (639)
228 KOG0543 FKBP-type peptidyl-pro 95.4 0.21 4.6E-06 48.4 11.4 96 351-446 257-355 (397)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.11 2.3E-06 51.6 9.7 61 314-377 74-138 (453)
230 smart00299 CLH Clathrin heavy 95.4 0.95 2.1E-05 38.0 14.5 88 11-102 8-95 (140)
231 KOG4555 TPR repeat-containing 95.4 0.19 4.1E-06 40.3 9.1 89 360-448 52-146 (175)
232 KOG1941 Acetylcholine receptor 95.3 0.2 4.3E-06 47.6 10.6 162 280-442 85-271 (518)
233 COG0457 NrfG FOG: TPR repeat [ 95.2 2.4 5.2E-05 38.4 26.7 194 247-446 59-265 (291)
234 KOG3941 Intermediate in Toll s 95.1 0.17 3.6E-06 46.5 9.2 101 265-368 52-175 (406)
235 PF07079 DUF1347: Protein of u 95.0 4.3 9.3E-05 40.3 31.6 352 15-388 133-530 (549)
236 KOG2066 Vacuolar assembly/sort 94.9 6.2 0.00013 42.0 22.4 99 20-123 366-467 (846)
237 PRK11906 transcriptional regul 94.9 0.64 1.4E-05 46.4 13.3 78 368-445 321-400 (458)
238 PF03704 BTAD: Bacterial trans 94.8 0.27 5.9E-06 41.7 9.7 69 282-353 66-138 (146)
239 KOG3941 Intermediate in Toll s 94.8 0.2 4.3E-06 46.0 8.9 99 63-161 52-173 (406)
240 PF04053 Coatomer_WDAD: Coatom 94.5 0.64 1.4E-05 47.3 12.9 131 288-447 271-403 (443)
241 COG1729 Uncharacterized protei 94.5 0.39 8.4E-06 44.3 10.1 96 281-377 145-241 (262)
242 KOG1920 IkappaB kinase complex 94.5 5.7 0.00012 44.3 20.1 83 321-410 971-1053(1265)
243 COG3118 Thioredoxin domain-con 94.5 3.2 7E-05 38.9 15.8 140 288-431 144-286 (304)
244 COG5107 RNA14 Pre-mRNA 3'-end 94.4 5.8 0.00013 39.4 28.4 133 278-416 397-535 (660)
245 smart00299 CLH Clathrin heavy 94.4 2.6 5.6E-05 35.3 14.7 84 217-304 12-95 (140)
246 PRK11906 transcriptional regul 94.3 3.1 6.7E-05 41.7 16.5 158 279-441 252-431 (458)
247 PF13281 DUF4071: Domain of un 94.2 4.6 0.0001 39.8 17.4 33 210-242 303-335 (374)
248 PF13512 TPR_18: Tetratricopep 94.2 1.6 3.4E-05 36.3 11.9 56 362-417 21-81 (142)
249 PF09205 DUF1955: Domain of un 94.0 2.3 4.9E-05 34.6 12.0 64 180-244 89-152 (161)
250 PF04053 Coatomer_WDAD: Coatom 93.9 2.2 4.7E-05 43.5 15.1 157 84-272 269-427 (443)
251 PF13512 TPR_18: Tetratricopep 93.8 2.8 6E-05 34.9 12.8 19 399-417 115-133 (142)
252 PRK11619 lytic murein transgly 93.7 12 0.00026 40.4 31.9 76 149-226 102-177 (644)
253 PF10300 DUF3808: Protein of u 93.5 3.8 8.2E-05 42.4 16.4 162 280-445 190-375 (468)
254 PF00515 TPR_1: Tetratricopept 93.5 0.15 3.2E-06 30.5 3.8 32 384-415 2-33 (34)
255 KOG4555 TPR repeat-containing 93.4 0.73 1.6E-05 37.1 8.3 90 324-415 52-147 (175)
256 PF07719 TPR_2: Tetratricopept 93.3 0.22 4.9E-06 29.6 4.5 32 385-416 3-34 (34)
257 COG0457 NrfG FOG: TPR repeat [ 93.2 6.1 0.00013 35.6 26.0 197 213-415 60-268 (291)
258 KOG2610 Uncharacterized conser 93.2 2.6 5.5E-05 40.0 12.9 112 260-377 116-235 (491)
259 PF04184 ST7: ST7 protein; In 93.1 6.2 0.00014 39.9 16.1 98 319-416 263-379 (539)
260 COG1729 Uncharacterized protei 93.1 1 2.3E-05 41.5 10.2 101 317-418 144-250 (262)
261 KOG2610 Uncharacterized conser 92.8 1.4 3.1E-05 41.7 10.6 159 290-453 115-283 (491)
262 COG4105 ComL DNA uptake lipopr 92.8 7.7 0.00017 35.7 18.7 19 288-306 177-195 (254)
263 COG4105 ComL DNA uptake lipopr 92.8 7.8 0.00017 35.7 19.6 56 390-445 174-232 (254)
264 PRK15331 chaperone protein Sic 92.8 0.85 1.8E-05 38.8 8.5 84 188-273 48-131 (165)
265 PF04184 ST7: ST7 protein; In 92.7 3.4 7.4E-05 41.6 13.6 70 383-452 259-330 (539)
266 COG5107 RNA14 Pre-mRNA 3'-end 92.6 12 0.00026 37.2 19.9 143 247-396 397-548 (660)
267 PF08631 SPO22: Meiosis protei 92.4 10 0.00023 36.1 22.2 18 123-140 5-22 (278)
268 COG4785 NlpI Lipoprotein NlpI, 92.3 7.4 0.00016 34.7 13.7 31 417-447 237-267 (297)
269 COG3629 DnrI DNA-binding trans 91.6 1 2.3E-05 42.2 8.4 62 384-445 154-215 (280)
270 KOG4234 TPR repeat-containing 91.4 0.85 1.8E-05 39.8 7.0 87 361-447 105-198 (271)
271 KOG2114 Vacuolar assembly/sort 91.0 10 0.00023 40.7 15.6 25 353-377 433-457 (933)
272 COG4649 Uncharacterized protei 90.9 3.6 7.7E-05 35.2 10.0 132 78-210 61-200 (221)
273 PF13170 DUF4003: Protein of u 90.8 3.5 7.6E-05 39.5 11.4 91 264-359 120-225 (297)
274 KOG0890 Protein kinase of the 90.5 50 0.0011 40.4 25.8 308 119-448 1391-1733(2382)
275 COG3118 Thioredoxin domain-con 90.4 16 0.00034 34.5 17.5 117 221-343 143-264 (304)
276 PRK09687 putative lyase; Provi 90.3 17 0.00037 34.7 25.2 80 246-330 141-221 (280)
277 PF04097 Nic96: Nup93/Nic96; 90.3 19 0.00042 38.7 17.7 48 75-124 111-158 (613)
278 PRK12798 chemotaxis protein; R 90.3 21 0.00045 35.5 20.9 186 260-446 125-324 (421)
279 PF13176 TPR_7: Tetratricopept 90.2 0.64 1.4E-05 28.2 3.9 26 419-444 1-26 (36)
280 PF02259 FAT: FAT domain; Int 90.2 16 0.00034 36.2 16.3 68 381-448 144-215 (352)
281 KOG1258 mRNA processing protei 89.8 27 0.00059 36.2 29.4 181 246-431 296-489 (577)
282 KOG1258 mRNA processing protei 89.5 29 0.00063 36.1 26.0 348 75-438 44-421 (577)
283 PF09613 HrpB1_HrpK: Bacterial 89.3 1.8 3.9E-05 36.7 7.1 51 395-445 22-72 (160)
284 PF09613 HrpB1_HrpK: Bacterial 89.2 13 0.00028 31.7 12.7 89 323-414 18-108 (160)
285 PF07035 Mic1: Colon cancer-as 89.2 14 0.00029 31.9 13.2 133 197-341 14-146 (167)
286 COG3629 DnrI DNA-binding trans 89.2 2.5 5.5E-05 39.7 8.7 76 146-221 153-236 (280)
287 KOG1586 Protein required for f 88.8 9.4 0.0002 34.5 11.4 53 365-417 128-188 (288)
288 PF13181 TPR_8: Tetratricopept 88.8 0.74 1.6E-05 27.3 3.5 31 385-415 3-33 (34)
289 PF02259 FAT: FAT domain; Int 88.6 26 0.00057 34.5 19.8 68 276-343 144-212 (352)
290 PF10300 DUF3808: Protein of u 88.6 33 0.00072 35.6 23.0 155 82-239 194-374 (468)
291 PF13170 DUF4003: Protein of u 88.3 8.4 0.00018 37.0 11.9 49 93-141 79-133 (297)
292 KOG1941 Acetylcholine receptor 88.2 26 0.00057 34.0 16.6 162 179-341 85-272 (518)
293 TIGR02561 HrpB1_HrpK type III 88.2 2.1 4.5E-05 35.7 6.6 52 396-447 23-74 (153)
294 KOG1920 IkappaB kinase complex 87.9 53 0.0012 37.2 20.6 171 186-378 860-1053(1265)
295 PRK09687 putative lyase; Provi 87.9 26 0.00055 33.5 25.6 137 176-326 141-278 (280)
296 PF13176 TPR_7: Tetratricopept 87.4 0.98 2.1E-05 27.4 3.4 27 385-411 1-27 (36)
297 KOG4648 Uncharacterized conser 87.3 1.3 2.9E-05 41.9 5.6 96 322-420 104-202 (536)
298 PF10602 RPN7: 26S proteasome 87.2 5.2 0.00011 35.1 9.1 59 248-306 37-101 (177)
299 PF13428 TPR_14: Tetratricopep 86.7 2.1 4.5E-05 27.4 4.8 27 280-306 3-29 (44)
300 PF10602 RPN7: 26S proteasome 86.7 14 0.0003 32.4 11.5 95 279-377 37-139 (177)
301 PF13431 TPR_17: Tetratricopep 86.6 1 2.2E-05 26.9 3.1 31 135-166 3-33 (34)
302 COG4649 Uncharacterized protei 86.6 13 0.00029 31.9 10.5 18 289-306 178-195 (221)
303 KOG1585 Protein required for f 86.6 26 0.00056 32.1 15.3 45 147-203 92-136 (308)
304 KOG4570 Uncharacterized conser 86.0 5.3 0.00012 37.7 8.6 100 40-141 59-165 (418)
305 PF00637 Clathrin: Region in C 85.5 0.67 1.5E-05 39.0 2.7 85 15-102 12-96 (143)
306 PF00515 TPR_1: Tetratricopept 85.4 1.7 3.7E-05 25.7 3.7 27 280-306 3-29 (34)
307 PF14853 Fis1_TPR_C: Fis1 C-te 85.0 7 0.00015 26.2 6.7 50 420-495 4-53 (53)
308 PF02284 COX5A: Cytochrome c o 84.8 9.4 0.0002 29.5 8.0 61 296-360 28-88 (108)
309 KOG4648 Uncharacterized conser 84.5 3.3 7.3E-05 39.4 6.7 86 285-383 104-198 (536)
310 PF07035 Mic1: Colon cancer-as 84.0 27 0.00059 30.1 15.9 131 134-305 17-147 (167)
311 TIGR02508 type_III_yscG type I 83.8 18 0.00039 27.9 9.3 86 127-216 21-106 (115)
312 PF00637 Clathrin: Region in C 83.7 0.79 1.7E-05 38.6 2.3 86 218-306 13-98 (143)
313 PF07721 TPR_4: Tetratricopept 83.6 1.8 3.8E-05 24.0 2.9 24 418-441 2-25 (26)
314 TIGR02561 HrpB1_HrpK type III 83.3 12 0.00026 31.3 8.7 52 326-380 21-73 (153)
315 COG1747 Uncharacterized N-term 83.3 58 0.0012 33.4 21.1 159 177-343 66-233 (711)
316 PF07719 TPR_2: Tetratricopept 82.9 2.5 5.5E-05 24.8 3.7 28 418-445 2-29 (34)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 10 0.00023 28.9 7.4 62 294-359 23-84 (103)
318 COG3947 Response regulator con 82.8 43 0.00093 31.6 16.0 59 387-445 283-341 (361)
319 PRK15180 Vi polysaccharide bio 82.7 21 0.00046 35.9 11.5 83 362-444 334-418 (831)
320 TIGR02508 type_III_yscG type I 82.2 15 0.00033 28.3 8.1 87 25-115 20-106 (115)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 81.7 10 0.00022 29.0 7.0 59 94-153 25-83 (103)
322 KOG2114 Vacuolar assembly/sort 81.6 86 0.0019 34.2 21.7 117 150-274 338-458 (933)
323 KOG0276 Vesicle coat complex C 81.5 21 0.00045 37.1 11.2 25 248-272 667-691 (794)
324 PF13374 TPR_10: Tetratricopep 80.8 3.4 7.3E-05 25.6 4.0 28 418-445 3-30 (42)
325 KOG4279 Serine/threonine prote 80.6 10 0.00022 40.2 9.0 184 232-419 183-402 (1226)
326 PF02284 COX5A: Cytochrome c o 79.0 13 0.00028 28.8 6.9 49 376-424 38-86 (108)
327 COG1747 Uncharacterized N-term 78.9 82 0.0018 32.3 21.5 168 247-423 66-245 (711)
328 KOG3364 Membrane protein invol 78.4 29 0.00063 28.6 9.1 48 398-445 50-99 (149)
329 PRK15180 Vi polysaccharide bio 78.3 13 0.00028 37.3 8.5 120 290-415 301-423 (831)
330 PF13174 TPR_6: Tetratricopept 78.2 3.9 8.5E-05 23.7 3.4 24 391-414 8-31 (33)
331 PF11207 DUF2989: Protein of u 77.9 16 0.00034 32.5 8.2 73 194-267 123-198 (203)
332 PF13374 TPR_10: Tetratricopep 77.5 4.9 0.00011 24.8 3.9 27 280-306 4-30 (42)
333 PF13181 TPR_8: Tetratricopept 77.2 5.8 0.00012 23.2 4.0 28 418-445 2-29 (34)
334 KOG4570 Uncharacterized conser 77.1 22 0.00048 33.8 9.2 98 141-242 59-165 (418)
335 PF08631 SPO22: Meiosis protei 77.1 69 0.0015 30.5 24.3 59 248-306 85-149 (278)
336 PF07163 Pex26: Pex26 protein; 77.0 20 0.00044 33.4 8.9 89 285-376 90-183 (309)
337 smart00028 TPR Tetratricopepti 76.4 6.3 0.00014 21.9 4.1 29 386-414 4-32 (34)
338 PF13174 TPR_6: Tetratricopept 75.7 4.1 9E-05 23.6 3.0 28 419-446 2-29 (33)
339 PF11207 DUF2989: Protein of u 75.6 19 0.0004 32.0 8.0 70 368-437 123-198 (203)
340 PF14853 Fis1_TPR_C: Fis1 C-te 75.4 8 0.00017 26.0 4.5 33 388-420 6-38 (53)
341 PF13762 MNE1: Mitochondrial s 74.7 26 0.00056 29.4 8.3 86 39-124 31-128 (145)
342 KOG2066 Vacuolar assembly/sort 74.5 1.3E+02 0.0029 32.6 20.8 31 248-278 506-536 (846)
343 PF13934 ELYS: Nuclear pore co 74.3 71 0.0015 29.3 13.0 104 281-395 79-184 (226)
344 PRK10941 hypothetical protein; 73.7 18 0.0004 34.1 8.2 62 385-446 183-244 (269)
345 COG4455 ImpE Protein of avirul 73.4 71 0.0015 28.9 11.9 57 282-341 5-61 (273)
346 KOG1464 COP9 signalosome, subu 73.0 81 0.0018 29.4 18.1 208 181-396 69-317 (440)
347 PHA02875 ankyrin repeat protei 72.4 91 0.002 31.7 13.8 174 21-212 10-196 (413)
348 KOG0276 Vesicle coat complex C 72.2 28 0.00061 36.2 9.3 77 47-137 616-692 (794)
349 PF09477 Type_III_YscG: Bacter 69.8 52 0.0011 25.8 8.7 80 125-207 20-99 (116)
350 PF10345 Cohesin_load: Cohesin 69.4 1.7E+02 0.0037 31.6 27.5 49 396-444 547-604 (608)
351 COG2976 Uncharacterized protei 69.0 84 0.0018 27.9 13.1 89 322-415 96-191 (207)
352 COG4455 ImpE Protein of avirul 68.6 19 0.00042 32.3 6.5 64 355-418 5-70 (273)
353 PF14669 Asp_Glu_race_2: Putat 68.4 84 0.0018 27.7 14.9 57 216-272 136-206 (233)
354 PF06552 TOM20_plant: Plant sp 68.2 25 0.00055 30.6 7.0 46 399-451 96-141 (186)
355 PF09986 DUF2225: Uncharacteri 67.1 34 0.00074 31.1 8.2 62 386-447 121-195 (214)
356 PF10579 Rapsyn_N: Rapsyn N-te 66.6 15 0.00032 27.0 4.5 47 327-373 18-65 (80)
357 PRK13800 putative oxidoreducta 66.5 2.4E+02 0.0052 32.2 24.5 256 166-445 624-880 (897)
358 TIGR03504 FimV_Cterm FimV C-te 66.5 11 0.00023 24.2 3.4 27 421-447 3-29 (44)
359 KOG1308 Hsp70-interacting prot 66.4 3.4 7.4E-05 39.4 1.7 89 364-452 127-217 (377)
360 KOG4642 Chaperone-dependent E3 66.4 17 0.00036 33.1 5.7 67 379-445 39-106 (284)
361 KOG4234 TPR repeat-containing 65.7 89 0.0019 27.8 9.8 62 358-419 141-204 (271)
362 PF13762 MNE1: Mitochondrial s 64.8 84 0.0018 26.4 10.1 50 176-225 78-128 (145)
363 PF04910 Tcf25: Transcriptiona 63.4 1.6E+02 0.0036 29.2 14.2 64 382-445 99-167 (360)
364 PF14561 TPR_20: Tetratricopep 63.2 20 0.00043 27.3 5.0 45 403-447 8-52 (90)
365 PF06552 TOM20_plant: Plant sp 61.9 30 0.00064 30.1 6.3 32 294-329 51-83 (186)
366 KOG4507 Uncharacterized conser 61.0 26 0.00056 36.3 6.6 97 327-426 619-719 (886)
367 PF09477 Type_III_YscG: Bacter 60.5 82 0.0018 24.8 9.0 86 227-318 21-106 (116)
368 COG5159 RPN6 26S proteasome re 60.4 91 0.002 29.4 9.4 119 184-302 10-149 (421)
369 PF10366 Vps39_1: Vacuolar sor 60.0 80 0.0017 25.0 8.1 27 179-205 41-67 (108)
370 PF11846 DUF3366: Domain of un 59.8 37 0.00081 30.2 7.1 35 380-414 141-175 (193)
371 PF13929 mRNA_stabil: mRNA sta 59.7 1.6E+02 0.0035 28.0 13.1 109 92-200 144-261 (292)
372 PHA02875 ankyrin repeat protei 59.3 2.1E+02 0.0045 29.0 15.6 134 153-295 72-216 (413)
373 PF07163 Pex26: Pex26 protein; 59.2 1.1E+02 0.0023 28.9 9.7 18 184-201 90-107 (309)
374 KOG1550 Extracellular protein 58.5 2.6E+02 0.0055 29.9 19.6 48 92-139 228-277 (552)
375 PRK13800 putative oxidoreducta 58.4 3.3E+02 0.0072 31.1 26.0 254 66-343 625-880 (897)
376 cd08819 CARD_MDA5_2 Caspase ac 58.2 46 0.00099 25.0 5.9 65 29-95 21-85 (88)
377 KOG0545 Aryl-hydrocarbon recep 58.2 79 0.0017 29.1 8.4 56 391-446 238-293 (329)
378 PF04190 DUF410: Protein of un 57.9 1.7E+02 0.0036 27.6 19.1 159 158-344 2-170 (260)
379 TIGR03504 FimV_Cterm FimV C-te 57.1 25 0.00054 22.5 3.9 23 183-205 5-27 (44)
380 PRK13342 recombination factor 56.5 2.3E+02 0.0051 28.8 14.8 44 179-222 229-275 (413)
381 PF04097 Nic96: Nup93/Nic96; 56.3 2.9E+02 0.0064 29.9 15.9 40 151-190 116-158 (613)
382 PF11846 DUF3366: Domain of un 55.5 48 0.001 29.4 7.1 54 324-377 117-170 (193)
383 KOG4077 Cytochrome c oxidase, 55.1 92 0.002 25.3 7.4 71 296-379 67-137 (149)
384 KOG0292 Vesicle coat complex C 55.1 29 0.00062 37.8 6.1 96 291-412 606-701 (1202)
385 COG2976 Uncharacterized protei 54.9 1.6E+02 0.0034 26.3 14.1 89 119-207 97-189 (207)
386 KOG1550 Extracellular protein 54.5 3E+02 0.0064 29.4 17.6 108 61-172 228-354 (552)
387 KOG0376 Serine-threonine phosp 54.3 9.5 0.00021 38.3 2.4 97 321-420 10-109 (476)
388 smart00386 HAT HAT (Half-A-TPR 54.3 28 0.0006 19.6 3.7 29 397-425 1-29 (33)
389 PF09670 Cas_Cas02710: CRISPR- 53.8 2.3E+02 0.0049 28.5 12.1 53 288-343 141-197 (379)
390 PF10579 Rapsyn_N: Rapsyn N-te 53.3 31 0.00068 25.3 4.3 45 395-439 18-65 (80)
391 PF14863 Alkyl_sulf_dimr: Alky 53.2 66 0.0014 26.9 6.9 62 368-432 58-119 (141)
392 KOG2396 HAT (Half-A-TPR) repea 53.2 2.8E+02 0.006 28.7 19.0 248 132-384 303-565 (568)
393 KOG2063 Vacuolar assembly/sort 53.2 3.5E+02 0.0076 30.4 14.0 214 13-257 507-742 (877)
394 KOG3807 Predicted membrane pro 53.0 1.3E+02 0.0028 29.0 9.3 18 401-418 380-397 (556)
395 PF11663 Toxin_YhaV: Toxin wit 52.8 19 0.0004 29.5 3.4 33 87-121 106-138 (140)
396 cd08819 CARD_MDA5_2 Caspase ac 51.0 1.1E+02 0.0023 23.2 7.1 38 259-297 48-85 (88)
397 PRK11619 lytic murein transgly 50.6 3.7E+02 0.008 29.3 35.4 95 358-452 414-511 (644)
398 PF10366 Vps39_1: Vacuolar sor 50.1 1E+02 0.0022 24.4 7.2 27 78-104 41-67 (108)
399 PF11768 DUF3312: Protein of u 47.6 1.9E+02 0.0041 30.2 10.3 23 252-274 413-435 (545)
400 KOG2659 LisH motif-containing 47.0 1.8E+02 0.0038 26.6 8.9 93 279-376 27-128 (228)
401 cd08326 CARD_CASP9 Caspase act 46.9 52 0.0011 24.7 4.8 63 29-95 18-80 (84)
402 KOG4077 Cytochrome c oxidase, 46.8 1.1E+02 0.0024 24.9 6.7 46 95-140 68-113 (149)
403 KOG0991 Replication factor C, 46.5 2.4E+02 0.0052 26.0 10.9 133 253-413 136-268 (333)
404 PF12968 DUF3856: Domain of Un 45.7 1.6E+02 0.0035 23.8 8.1 61 383-443 55-126 (144)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 45.7 1.4E+02 0.003 24.4 7.6 42 401-442 81-124 (126)
406 PF12862 Apc5: Anaphase-promot 44.8 70 0.0015 24.4 5.5 52 394-445 9-69 (94)
407 PF11663 Toxin_YhaV: Toxin wit 44.7 28 0.0006 28.6 3.2 33 188-222 106-138 (140)
408 PF04190 DUF410: Protein of un 43.3 2.9E+02 0.0062 26.0 17.2 105 57-172 2-116 (260)
409 PRK10564 maltose regulon perip 43.2 46 0.00099 31.7 4.9 39 179-217 259-297 (303)
410 PF11838 ERAP1_C: ERAP1-like C 43.0 3.2E+02 0.0069 26.4 17.8 97 330-426 145-245 (324)
411 KOG3824 Huntingtin interacting 42.4 52 0.0011 31.2 5.0 45 395-439 128-172 (472)
412 PF13929 mRNA_stabil: mRNA sta 41.6 3.2E+02 0.0069 26.0 19.1 60 243-302 198-262 (292)
413 PF11848 DUF3368: Domain of un 41.4 99 0.0022 20.1 5.2 32 188-219 13-44 (48)
414 PF14689 SPOB_a: Sensor_kinase 41.1 59 0.0013 22.6 4.1 29 314-342 22-50 (62)
415 COG3947 Response regulator con 41.1 3.3E+02 0.0071 26.0 13.5 58 249-306 281-341 (361)
416 KOG0551 Hsp90 co-chaperone CNS 40.9 1.7E+02 0.0038 28.3 8.2 89 354-442 84-178 (390)
417 PRK10941 hypothetical protein; 40.8 2.9E+02 0.0062 26.2 9.9 68 282-353 185-253 (269)
418 PF11848 DUF3368: Domain of un 40.8 91 0.002 20.3 4.7 28 125-152 16-43 (48)
419 PF07720 TPR_3: Tetratricopept 39.9 86 0.0019 19.0 4.4 18 388-405 6-23 (36)
420 PF14689 SPOB_a: Sensor_kinase 39.7 65 0.0014 22.4 4.1 28 350-377 22-49 (62)
421 KOG4507 Uncharacterized conser 39.6 1.2E+02 0.0025 31.8 7.3 84 364-447 620-706 (886)
422 KOG4642 Chaperone-dependent E3 39.5 3.1E+02 0.0068 25.3 9.4 81 257-341 20-104 (284)
423 PF14669 Asp_Glu_race_2: Putat 39.3 2.8E+02 0.006 24.7 13.0 24 3-26 1-24 (233)
424 KOG0890 Protein kinase of the 39.1 9.1E+02 0.02 30.6 28.7 154 19-183 1392-1552(2382)
425 KOG4334 Uncharacterized conser 38.9 22 0.00049 35.6 2.3 145 4-159 409-573 (650)
426 PRK10564 maltose regulon perip 38.8 50 0.0011 31.4 4.5 30 79-108 260-289 (303)
427 KOG2582 COP9 signalosome, subu 38.6 4E+02 0.0087 26.3 14.5 127 121-274 193-343 (422)
428 TIGR02270 conserved hypothetic 38.4 4.4E+02 0.0096 26.8 25.5 98 83-188 45-142 (410)
429 PF07575 Nucleopor_Nup85: Nup8 38.1 3.1E+02 0.0067 29.4 11.0 61 211-273 404-464 (566)
430 PF12862 Apc5: Anaphase-promot 38.1 1.2E+02 0.0026 23.1 5.9 25 389-413 47-71 (94)
431 KOG1586 Protein required for f 37.4 3.4E+02 0.0073 25.1 19.7 17 326-342 165-181 (288)
432 KOG3364 Membrane protein invol 36.8 2E+02 0.0044 23.9 6.9 71 348-418 29-106 (149)
433 COG4976 Predicted methyltransf 36.5 73 0.0016 29.0 4.8 52 364-415 8-61 (287)
434 PF11817 Foie-gras_1: Foie gra 36.0 1.4E+02 0.0031 27.7 7.2 16 84-99 18-33 (247)
435 COG0735 Fur Fe2+/Zn2+ uptake r 35.7 2.3E+02 0.0051 23.8 7.7 62 199-261 8-69 (145)
436 cd08332 CARD_CASP2 Caspase act 35.5 90 0.0019 23.7 4.7 59 29-91 22-80 (90)
437 cd00280 TRFH Telomeric Repeat 35.5 2.1E+02 0.0047 25.1 7.3 28 359-386 119-146 (200)
438 TIGR02270 conserved hypothetic 35.4 4.9E+02 0.011 26.4 23.8 26 280-305 254-279 (410)
439 COG5108 RPO41 Mitochondrial DN 34.3 1.7E+02 0.0036 31.2 7.6 74 283-360 33-112 (1117)
440 smart00638 LPD_N Lipoprotein N 33.6 6.2E+02 0.014 27.1 22.5 101 43-146 308-411 (574)
441 COG0735 Fur Fe2+/Zn2+ uptake r 33.4 1.6E+02 0.0035 24.7 6.4 42 119-160 28-69 (145)
442 PF15469 Sec5: Exocyst complex 33.2 3.3E+02 0.0072 23.8 10.9 24 320-343 91-114 (182)
443 PF13934 ELYS: Nuclear pore co 33.2 3.9E+02 0.0084 24.5 13.0 119 252-382 81-203 (226)
444 PF10475 DUF2450: Protein of u 32.8 2.3E+02 0.0051 27.1 8.2 53 151-205 103-155 (291)
445 COG4785 NlpI Lipoprotein NlpI, 32.3 3.9E+02 0.0085 24.3 15.6 161 77-244 100-269 (297)
446 PF04034 DUF367: Domain of unk 32.3 2.8E+02 0.0061 22.7 7.5 51 353-403 68-119 (127)
447 PF02847 MA3: MA3 domain; Int 32.2 1.1E+02 0.0024 24.1 5.1 19 184-202 9-27 (113)
448 PF14427 Pput2613-deam: Pput_2 31.9 1.6E+02 0.0034 23.2 5.3 59 512-570 44-102 (118)
449 PF07575 Nucleopor_Nup85: Nup8 31.8 4.5E+02 0.0098 28.1 11.0 42 96-137 390-431 (566)
450 PF07064 RIC1: RIC1; InterPro 31.7 4.4E+02 0.0096 24.8 15.8 156 78-242 84-250 (258)
451 PF11525 CopK: Copper resistan 31.1 22 0.00048 25.0 0.7 22 562-583 8-29 (73)
452 PRK11639 zinc uptake transcrip 31.1 1.6E+02 0.0034 25.6 6.1 33 90-122 39-71 (169)
453 PF12968 DUF3856: Domain of Un 30.7 2.9E+02 0.0064 22.4 9.6 47 290-336 21-76 (144)
454 cd07153 Fur_like Ferric uptake 30.5 1.2E+02 0.0025 24.2 5.0 46 82-127 6-51 (116)
455 KOG2422 Uncharacterized conser 30.4 6.8E+02 0.015 26.5 13.0 54 391-444 350-405 (665)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 30.0 3.1E+02 0.0066 22.4 9.1 42 333-375 81-123 (126)
457 PRK14962 DNA polymerase III su 29.9 6.6E+02 0.014 26.2 11.7 24 88-111 255-278 (472)
458 KOG2297 Predicted translation 29.6 5.2E+02 0.011 24.9 11.1 19 248-266 322-340 (412)
459 PF11838 ERAP1_C: ERAP1-like C 29.3 5.3E+02 0.011 24.9 16.5 28 315-342 201-228 (324)
460 COG5108 RPO41 Mitochondrial DN 29.1 2.8E+02 0.0061 29.7 8.2 117 252-377 33-159 (1117)
461 PHA03100 ankyrin repeat protei 28.9 6.6E+02 0.014 25.9 15.4 21 255-275 255-275 (480)
462 PF14044 NETI: NETI protein 28.9 51 0.0011 22.3 2.0 16 483-498 10-25 (57)
463 TIGR02710 CRISPR-associated pr 28.6 6.1E+02 0.013 25.4 11.9 11 429-439 258-268 (380)
464 COG2909 MalT ATP-dependent tra 27.9 9E+02 0.02 27.1 24.5 311 114-442 330-684 (894)
465 PRK09169 hypothetical protein; 27.7 1.4E+03 0.03 29.2 40.0 435 9-443 161-692 (2316)
466 PF14561 TPR_20: Tetratricopep 26.7 2.8E+02 0.0062 21.0 8.4 62 382-443 21-85 (90)
467 PF08967 DUF1884: Domain of un 26.7 79 0.0017 23.3 2.8 27 476-502 7-33 (85)
468 KOG0376 Serine-threonine phosp 26.5 1.2E+02 0.0027 30.8 5.1 99 256-361 13-115 (476)
469 PRK13342 recombination factor 26.5 7E+02 0.015 25.4 15.6 97 209-325 173-275 (413)
470 PF12796 Ank_2: Ankyrin repeat 26.3 1.8E+02 0.0039 21.4 5.2 13 57-69 35-47 (89)
471 COG2178 Predicted RNA-binding 26.2 2.9E+02 0.0064 24.5 6.7 52 255-306 37-97 (204)
472 KOG1524 WD40 repeat-containing 26.2 3.3E+02 0.0072 28.2 7.9 89 351-442 573-669 (737)
473 PF04090 RNA_pol_I_TF: RNA pol 26.2 4.8E+02 0.01 23.4 10.1 29 278-306 41-69 (199)
474 KOG2659 LisH motif-containing 26.0 5.1E+02 0.011 23.7 10.2 95 311-408 22-128 (228)
475 KOG0687 26S proteasome regulat 25.7 6.3E+02 0.014 24.6 12.9 11 518-528 319-329 (393)
476 KOG0508 Ankyrin repeat protein 25.7 3.3E+02 0.0073 27.8 7.7 271 118-425 88-384 (615)
477 PF09454 Vps23_core: Vps23 cor 25.7 1.8E+02 0.0039 20.5 4.5 48 174-222 5-52 (65)
478 KOG1464 COP9 signalosome, subu 24.9 5.9E+02 0.013 24.0 16.1 118 189-306 39-173 (440)
479 cd08326 CARD_CASP9 Caspase act 24.9 3E+02 0.0065 20.6 5.8 38 157-194 41-78 (84)
480 PF10255 Paf67: RNA polymerase 24.5 4.2E+02 0.0092 26.8 8.4 57 249-305 124-191 (404)
481 COG4976 Predicted methyltransf 24.1 1.4E+02 0.003 27.3 4.4 55 393-447 5-59 (287)
482 PF10255 Paf67: RNA polymerase 24.0 3.3E+02 0.0071 27.5 7.6 57 148-204 124-191 (404)
483 PHA03100 ankyrin repeat protei 23.8 8.1E+02 0.018 25.2 13.5 238 17-273 39-306 (480)
484 smart00544 MA3 Domain in DAP-5 23.5 3.7E+02 0.0079 21.1 8.0 21 183-203 8-28 (113)
485 PLN03192 Voltage-dependent pot 23.5 1E+03 0.022 27.0 12.4 56 217-276 624-681 (823)
486 PF11817 Foie-gras_1: Foie gra 23.4 3.4E+02 0.0073 25.3 7.3 24 354-377 181-204 (247)
487 KOG0326 ATP-dependent RNA heli 23.4 23 0.0005 33.6 -0.4 17 569-585 362-381 (459)
488 PF02847 MA3: MA3 domain; Int 23.3 2.7E+02 0.0058 21.8 5.9 23 283-305 7-29 (113)
489 COG2912 Uncharacterized conser 23.2 2.3E+02 0.0049 26.7 5.9 58 389-446 187-244 (269)
490 KOG4567 GTPase-activating prot 23.2 6.9E+02 0.015 24.2 9.7 42 198-239 264-305 (370)
491 PF10155 DUF2363: Uncharacteri 22.8 4.3E+02 0.0093 21.6 10.8 94 79-172 21-124 (126)
492 PRK09857 putative transposase; 22.8 5.2E+02 0.011 24.8 8.6 65 387-451 210-274 (292)
493 PRK09462 fur ferric uptake reg 22.7 1.8E+02 0.004 24.4 5.0 59 1-59 8-66 (148)
494 PF11123 DNA_Packaging_2: DNA 22.7 1.2E+02 0.0027 21.8 3.1 33 25-58 12-44 (82)
495 COG0790 FOG: TPR repeat, SEL1 22.3 6.7E+02 0.015 23.7 19.2 77 369-448 173-268 (292)
496 PF12796 Ank_2: Ankyrin repeat 22.2 2.7E+02 0.0058 20.4 5.4 81 55-146 4-87 (89)
497 cd07153 Fur_like Ferric uptake 22.2 2E+02 0.0043 22.8 4.9 49 15-63 5-53 (116)
498 PRK14700 recombination factor 22.0 6.2E+02 0.013 24.4 8.6 31 90-120 140-170 (300)
499 cd00280 TRFH Telomeric Repeat 21.7 3.1E+02 0.0068 24.1 5.9 30 389-419 117-146 (200)
500 KOG2908 26S proteasome regulat 21.4 7.3E+02 0.016 24.3 8.8 53 188-240 86-143 (380)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.9e-122 Score=991.10 Aligned_cols=580 Identities=38% Similarity=0.653 Sum_probs=574.6
Q ss_pred CCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHH
Q 007881 5 CISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYIS 84 (586)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 84 (586)
++.||..||+.++.+|++.++++.|.++|..|++.|+.||..+||.|+++|+++|++++|.++|++|++||+++||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|+++|+++|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC
Q 007881 165 AKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244 (586)
Q Consensus 165 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (586)
|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007881 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
||..++++|+++|+++|++++|.++|++|.+||+++||+||.+|+++|+.++|+++|++|.+ .|+.||..||++++.+
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA--EGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007881 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
|++.|++++|.++|+.|.+++|+.|+..+|+++|++|+++|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|..
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHH
Q 007881 405 AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLT 484 (586)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (586)
+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|.++|..||+.+++++.+.
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcEEEEecccccCCcchhhHhhccccCceE
Q 007881 485 KLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREV 564 (586)
Q Consensus 485 ~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~ 564 (586)
++..+|++.||+||+.+++|++++++|+..+.+||||||++|||+++|+|.||||+||||+|+|||+|+|+||++++|+|
T Consensus 596 ~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 675 (697)
T PLN03081 596 ELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREI 675 (697)
T ss_pred HHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccceecccccccCCCC
Q 007881 565 IVRDNNRFHRFWDGYCSCSDYW 586 (586)
Q Consensus 565 ~~~~~~~~h~~~~g~~~~~~~~ 586 (586)
||||.+|||||+||+|||+|||
T Consensus 676 ~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 676 VVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EEecCCccccCCCCcccccccC
Confidence 9999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-117 Score=980.08 Aligned_cols=579 Identities=39% Similarity=0.686 Sum_probs=570.0
Q ss_pred CccCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHH
Q 007881 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWN 80 (586)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (586)
|++.|+.||.+||+.+|.+|++.|+++.|.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|..||+++||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007881 81 AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN 160 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 160 (586)
+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..+||+|+++|+++|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH
Q 007881 161 EVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (586)
++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007881 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+ .|+.||..||+.
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~--~g~~Pd~~T~~~ 594 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE--SGVNPDEVTFIS 594 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCcccHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999 899999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|..+++.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999987789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHH
Q 007881 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQ 480 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (586)
.|+.+.+++.+++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++.+|.|.++|.+||+.++|+
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~ 754 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEIN 754 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcEEEEecccccCCcchhhHhhcccc
Q 007881 481 AMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIV 560 (586)
Q Consensus 481 ~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~ 560 (586)
..++++..+|++.||+||+.+++ ++++++|+..+++||||||++|||+++|+|.||||+||||+|+|||+++|+||+++
T Consensus 755 ~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~ 833 (857)
T PLN03077 755 TVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV 833 (857)
T ss_pred HHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHh
Confidence 99999999999999999999887 55778899999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccceecccccccCC
Q 007881 561 GREVIVRDNNRFHRFWDGYCSCSD 584 (586)
Q Consensus 561 ~~~~~~~~~~~~h~~~~g~~~~~~ 584 (586)
+|+|||||.+|||||+||+|||+|
T Consensus 834 ~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 834 RREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.3e-75 Score=640.28 Aligned_cols=570 Identities=23% Similarity=0.348 Sum_probs=513.0
Q ss_pred CccCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHH
Q 007881 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWN 80 (586)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (586)
|++.|+.|+..+|..++++|.+.+.++.|.++|..+++.+..++..++|+|+.+|+++|+++.|.++|++|++||+++||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007881 81 AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN 160 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 160 (586)
+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..+.+++..+.+.|+.||..++|+|+.+|+++|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH
Q 007881 161 EVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (586)
++++|.++|++|+.+|.++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007881 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
.|+.||..+||+|+++|+++|++++|.++|++|.+||.++||+||.+|++.|++++|+++|++|.+ .|+.||..||+.
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~Pd~~t~~~ 394 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ--DNVSPDEITIAS 394 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCCCceeHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
++.+|++.|++++|.++++.+.+. |+.|+..+|++||++|+++|++++|.++|++|. +||..+|++++.+|.+.|+.+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHH
Confidence 999999999999999999999775 999999999999999999999999999999996 479999999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCE------------------
Q 007881 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNR------------------ 462 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~------------------ 462 (586)
+|..+|++|.+.-++|..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++..
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~ 552 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK 552 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 99999999987667778899999999999999999999999998888877653322211100
Q ss_pred -EEEE---EecCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhhhhhh---hHHHHHHHHHhcccCCCCCC
Q 007881 463 -IHIF---QAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEV---GHHSEKIALAFGLIAIPPGV 535 (586)
Q Consensus 463 -~~~~---~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~ 535 (586)
+..| ..+...|+..++ +.+++++|.+.|+.||..++...+..+.+.+.+ ....+.|...+|+.|...++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~----A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 0000 001122343333 558999999999999999998888777765544 34566777788988877776
Q ss_pred cEEEEecccccCCcchhhHhhccccCc------eEEEecCCccceecccc
Q 007881 536 PIRITKNLRICGDCHSAFKFISGIVGR------EVIVRDNNRFHRFWDGY 579 (586)
Q Consensus 536 ~~~~~~~l~~~~~~~~~~~~~s~~~~~------~~~~~~~~~~h~~~~g~ 579 (586)
. ++++.+..+|+..+|.++|.+|+.+ ..++..|+.+.+.+.|+
T Consensus 629 ~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 629 A-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred H-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 6 7999999999999999999998644 23344555555555444
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.9e-65 Score=549.99 Aligned_cols=528 Identities=13% Similarity=0.166 Sum_probs=454.5
Q ss_pred CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCC-CCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHH
Q 007881 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQ-IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYIS 84 (586)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 84 (586)
..++...|..++..|.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346778899999999999999999999999999985 5677888899999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHH
Q 007881 165 AKVVFDGII----DKNDVSWCSMLVVYVQNYEEENGCQMFLTARR--EGVEPKDFMISSVLSACARIAGLELGRSVHAVA 238 (586)
Q Consensus 165 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 238 (586)
|.++|++|. .||.++||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999994 58999999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC
Q 007881 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN 314 (586)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd 314 (586)
.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+ .|+.||
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k--~G~~pd 683 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK--QGIKLG 683 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCC
Confidence 9999999999999999999999999999999999984 8999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHH
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM---PMRPTISVWGALLN 391 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~ 391 (586)
..+|++++.+|++.|++++|.++|++|... |+.||..+|++||.+|++.|++++|.++|++| ++.||..+|++++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999764 99999999999999999999999999999998 78899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccC-CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-ccCCceeeeeeCCEEEEEEec
Q 007881 392 ACRVYGKPELGRIAADNLFKLD-PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI-KKGAGCSWISVKNRIHIFQAK 469 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~~~~~~~~~~~~~ 469 (586)
+|++.|++++|.+++.+|.+.+ .++..+|..++.+|. ++++++..+.+.+..... .+...
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~---------------- 824 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIE---------------- 824 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccc----------------
Confidence 9999999999999999999876 456788888887654 245555555444332110 00000
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcE--EEEecccccC
Q 007881 470 DTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPI--RITKNLRICG 547 (586)
Q Consensus 470 ~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~l~~~~ 547 (586)
.. -...+..++++|.+.|+.||..++...+ .|.....-......|-..+++.+.+++... .+++.+ |.
T Consensus 825 ---n~----w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~ 894 (1060)
T PLN03218 825 ---NK----WTSWALMVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--GE 894 (1060)
T ss_pred ---cc----hHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--cc
Confidence 00 0122457888888888888887775554 333111112234455556777776666432 233332 11
Q ss_pred CcchhhHhhccccCceE
Q 007881 548 DCHSAFKFISGIVGREV 564 (586)
Q Consensus 548 ~~~~~~~~~s~~~~~~~ 564 (586)
.-..|..++..|..+.|
T Consensus 895 ~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 895 YDPRAFSLLEEAASLGV 911 (1060)
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 12467777777666644
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.7e-64 Score=543.17 Aligned_cols=441 Identities=19% Similarity=0.234 Sum_probs=415.0
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC----CCCcccHHHHH
Q 007881 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP----ERNLATWNAYI 83 (586)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li 83 (586)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||+.+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 48999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCC
Q 007881 84 SNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVR--SGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred hHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007881 162 VGLAKVVFDGIID----KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 162 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
+++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999954 577999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC
Q 007881 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP----ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP 313 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p 313 (586)
|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.. .|+.|
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~--~Gi~P 752 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR--LGLCP 752 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 9999999999999999999999999999999999995 59999999999999999999999999999999 89999
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----hcC-------------------ChHHH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLG----RAG-------------------LVDRA 370 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A 370 (586)
|..||+.++.+|++.|++++|.++|..|.+. |+.||..+|++|+.+|. +++ ..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 9999999999999999999999999999775 99999999999997643 222 24679
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 371 YEIIKEM---PMRPTISVWGALLNACRVYGKPELGRIAADNLFKL-DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 371 ~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+|++| ++.||..||+.++.++.+.+..+.+..+++.+... .+++..+|..|++.+.+. .++|..++++|...
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999 88999999999998888888999998888877654 466788999999987432 36899999999999
Q ss_pred CCccCCc
Q 007881 447 GIKKGAG 453 (586)
Q Consensus 447 g~~~~~~ 453 (586)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9999864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-61 Score=517.01 Aligned_cols=488 Identities=20% Similarity=0.276 Sum_probs=426.3
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007881 74 RNLATWNAYISNAVLGGRPKNAIDAFINLRRTG-GEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGL 152 (586)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (586)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHH
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGR 232 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 232 (586)
+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007881 233 SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+ .|+.
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~ 322 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVS 322 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007881 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNA 392 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 392 (586)
||..||++++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 99999999999999999999999999999876 999999999999999999999999999999996 5899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccC-CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-CCCccCCceeeeeeCCEEEEEEecC
Q 007881 393 CRVYGKPELGRIAADNLFKLD-PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD-VGIKKGAGCSWISVKNRIHIFQAKD 470 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (586)
|+++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|.+ .|+.|+...+... +..|
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l----i~~l---- 472 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM----IELL---- 472 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH----HHHH----
Confidence 999999999999999999876 55789999999999999999999999999986 6888875333222 2122
Q ss_pred CCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcccCCCCCCcEEEEecccccCCcc
Q 007881 471 TSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCH 550 (586)
Q Consensus 471 ~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~ 550 (586)
...+..+++ .+.+++.+..||..++..-+..+.+.+.+..-.+.....+++.+...+..+.+++.+..+|+..
T Consensus 473 ~r~G~~~eA-------~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 473 GREGLLDEA-------YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HhcCCHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 123333333 2334566889998776655555543332211111111234555554555666778889999999
Q ss_pred hhhHhhccccCceEE-------EecCCccceeccccc
Q 007881 551 SAFKFISGIVGREVI-------VRDNNRFHRFWDGYC 580 (586)
Q Consensus 551 ~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~~ 580 (586)
+|.+++..|..+.+- +.-.+..|.|..|-.
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999999998887653 223455677766643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5.2e-27 Score=264.75 Aligned_cols=425 Identities=11% Similarity=0.030 Sum_probs=299.8
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHc
Q 007881 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVL 88 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 88 (586)
....++..+.+.|+++.|..+++.+.+.. ++++.++..+...|.+.|++++|.+.|+++.+ .+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 34456666777788888888888777643 55667777788888888888888888876543 344556667777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007881 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.|++++|.+.|+++...+. .+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+
T Consensus 512 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888888887776532 255667777777777788888888877777664 44566677777777888888888877
Q ss_pred HhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007881 169 FDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 169 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
++.+.. .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+..+.
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 667 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD- 667 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 777643 355677777777777888888888877776643 334556666777777777788887777777765543
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+...+..++..+.+.|++++|.++++.+.+ .+...|..+...+...|++++|.+.|+++.. . .|+..++..+.
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~~~l~ 743 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--R--APSSQNAIKLH 743 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h--CCCchHHHHHH
Confidence 566777777777777777777777777754 3455666677777777777777777777766 2 35556666677
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
.++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ +
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 7777777777777777777653 2445667777777777777777777777776 222356667777777777777 6
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
+|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677777777777777777777777777777777777777777776543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.5e-26 Score=261.04 Aligned_cols=426 Identities=10% Similarity=-0.041 Sum_probs=344.3
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHH
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISN 85 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 85 (586)
+...+..+...+...|+++.|...+..+.+.. +........++..|.+.|++++|.++++.+.. ++..+|+.+...
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 34456666777788889999999998888765 33445666778888899999999998887754 456778888888
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007881 86 AVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 165 (586)
+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...|.+.|+.++|
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998877432 245566777788888899999999999888775 55677888888999999999999
Q ss_pred HHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC
Q 007881 166 KVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKAC 242 (586)
Q Consensus 166 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (586)
...|+++.. .+...+..++..|...|++++|+.+++++.... +.+..++..+..++...|++++|...+..+.+..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999888743 345677788888999999999999999887643 4567788888888889999999999998888776
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHH
Q 007881 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLV 319 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~ 319 (586)
+. +...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+ .. +++...+.
T Consensus 632 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~ 707 (899)
T TIGR02917 632 PD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QH-PKAALGFE 707 (899)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC-cCChHHHH
Confidence 43 567788888889999999999999988754 4567888888889999999999999999887 33 34667777
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 007881 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYG 397 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~ 397 (586)
.+...+...|++++|...|+.+... .|+..++..+...+.+.|++++|.+.++++ ..+.+..++..+...|...|
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 8888888999999999999888643 566677888888899999999999888887 23346677888888888899
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.++|...++++.+..|+++..+..++.++...|+ .+|..+++++.+.
T Consensus 785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999999999999999888888899999999988 8899988888764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=1.4e-30 Score=207.83 Aligned_cols=106 Identities=59% Similarity=0.994 Sum_probs=96.6
Q ss_pred ceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhh--------hhhhhHHHHHHHH
Q 007881 453 GCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEK--------MTEVGHHSEKIAL 524 (586)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 524 (586)
||+|+.+ |.|.+++.+||+. .+..+|...|+.|++..+.|+++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899875 9999999999976 566778889999999999998887765 5678999999999
Q ss_pred HhcccCCCCCCcEEEEecc-cccCCcchhhHhhccccCceEEEecCCccceec
Q 007881 525 AFGLIAIPPGVPIRITKNL-RICGDCHSAFKFISGIVGREVIVRDNNRFHRFW 576 (586)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 576 (586)
+||++++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899998 999999999999999999999999999999996
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4e-21 Score=185.91 Aligned_cols=377 Identities=15% Similarity=0.134 Sum_probs=210.8
Q ss_pred hhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HH
Q 007881 46 FVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN-AC 121 (586)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~ 121 (586)
.+|+.+.+.+-..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.+...+-+. ..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHH
Confidence 3455555555556666666666655543 2344565666666666666666666655554 3444443322222 22
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHH
Q 007881 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKND---VSWCSMLVVYVQNYEEENGCQ 198 (586)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~ 198 (586)
...|++++|...+.++++.. +--..+|+.|...+-..|++..|..-|++...-|+ ..|-.|...|-..+.+++|+.
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 23455666666665555552 12234556666666666666666666665544332 345555556666666666666
Q ss_pred HHHHHHHCCCCCC-HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 007881 199 MFLTARREGVEPK-DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-- 275 (586)
Q Consensus 199 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 275 (586)
.|.+... ..|+ ...+..+...|...|.++.|...+++.++..+. -...|+.|..++-..|++.+|.+.+.+...
T Consensus 274 ~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 6555544 2343 334444555555666666666666666554433 244566666666666666666666665543
Q ss_pred -CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hH
Q 007881 276 -RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AE 352 (586)
Q Consensus 276 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 352 (586)
....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++.. .++|+ ..
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 2234555566666666666666666666655 3454 3455666666666666666666666654 45555 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
.|+.+...|-..|+.+.|.+.+.+. .+.|. ...++.|.+.+...|+..+|++.++.+++++|+.+.+|..++..+.-.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 5666666666666666666666555 44443 234555666666666666666666666666666666666555554444
Q ss_pred CChHH
Q 007881 431 GRWEE 435 (586)
Q Consensus 431 g~~~~ 435 (586)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 44443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5.1e-19 Score=201.26 Aligned_cols=416 Identities=11% Similarity=0.045 Sum_probs=325.2
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCc---ccHHHH----------
Q 007881 18 KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNL---ATWNAY---------- 82 (586)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 82 (586)
..+...|++++|...++..++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34567899999999999999865 45778889999999999999999999988754 322 223222
Q ss_pred --HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007881 83 --ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN 160 (586)
Q Consensus 83 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 160 (586)
...+.+.|++++|+..|++...... .+...+..+...+...|++++|++.++++++.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 3356788999999999999988532 245567778888999999999999999999874 445666777777775 46
Q ss_pred ChHHHHHHHhcCCCCC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcccC
Q 007881 161 EVGLAKVVFDGIIDKN------------DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEP-KDFMISSVLSACARIAG 227 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~ 227 (586)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999988775432 123455677888999999999999999875 45 45566778888999999
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Ce---------eHHHHHHHHHHhcCCH
Q 007881 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER----NL---------VCWNAIIGGYAHQGHA 294 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---------~~~~~li~~~~~~g~~ 294 (586)
+++|...++.+++..+. +...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999886654 4555555666778899999999999988642 11 1123456678899999
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHH
Q 007881 295 DMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEI 373 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 373 (586)
++|.++++. . +++...+..+...+.+.|++++|+..|+.+.+. .| +...+..++..|...|++++|++.
T Consensus 590 ~eA~~~l~~--~-----p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 590 AEAEALLRQ--Q-----PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHHHh--C-----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999872 1 235566777888999999999999999999854 44 478889999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHHHHHH-
Q 007881 374 IKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS------GNHVLLSNMFAATGRWEEADLVRKEMK- 444 (586)
Q Consensus 374 ~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~- 444 (586)
++.. ...| +..++..+..++...|++++|..+++++.+..|+++ ..+..++.++...|++++|...+++..
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987 3444 455677788889999999999999999999876543 355567899999999999999999875
Q ss_pred hCCCcc
Q 007881 445 DVGIKK 450 (586)
Q Consensus 445 ~~g~~~ 450 (586)
..|+.|
T Consensus 740 ~~~~~~ 745 (1157)
T PRK11447 740 ASGITP 745 (1157)
T ss_pred hcCCCC
Confidence 345544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=9.4e-21 Score=183.37 Aligned_cols=358 Identities=14% Similarity=0.159 Sum_probs=308.8
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHH
Q 007881 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS-VCNGL 152 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l 152 (586)
-..+|..+...+-..|++++|+.+|+.|.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 3457888999999999999999999999984 45 4668999999999999999999999999887 45543 44455
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCc
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDKN---DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGL 228 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~ 228 (586)
.......|++++|...+.+..+.+ .+.|+.|...+-.+|+...|+..|++... +.|+- ..|..+...+...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcc
Confidence 566667899999999887765433 46899999999999999999999999876 45653 4788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-eeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007881 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN-LVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
+.|...+.+.....+. ...++..|.-.|-..|.++-|...+++..+ |+ ..+||.|..++-..|+..+|.+.|.+..
T Consensus 269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999888776544 456677788889999999999999999875 43 4699999999999999999999999998
Q ss_pred hccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 007881 306 SMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT 382 (586)
Q Consensus 306 ~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 382 (586)
. ..|+ ....+.|...+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+.-+++. .++|+
T Consensus 348 ~----l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 348 R----LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred H----hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 8 4466 5788999999999999999999999886 55676 677899999999999999999999987 88887
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 383 I-SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 383 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
. ..++.+...|...|+++.|.+.+.+++..+|.-..++..|+.+|..+|+..+|..-++...+.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 4 689999999999999999999999999999999999999999999999999999999988763
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.2e-18 Score=198.34 Aligned_cols=416 Identities=12% Similarity=0.059 Sum_probs=259.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhh-hHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCC
Q 007881 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFV-GCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGR 91 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 91 (586)
..+.+...|++++|.+.++.+.+.. +|+... ...+.......|+.++|++.|+++.. | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 3445778899999999999988654 344321 11122222345889999999988865 3 44567778888888899
Q ss_pred hhHHHHHHHHHHHCCC------------------C--------------CChhhH---------------------HHHH
Q 007881 92 PKNAIDAFINLRRTGG------------------E--------------PDLITF---------------------CAFL 118 (586)
Q Consensus 92 ~~~A~~~~~~m~~~g~------------------~--------------p~~~t~---------------------~~ll 118 (586)
.++|+..|+++..... . |+...+ ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999888754211 0 111000 0112
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh---hhHHHH----------
Q 007881 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--KND---VSWCSM---------- 183 (586)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 183 (586)
.++...|++++|...++++++.. +.+..++..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 33556788888888888888774 44677888888889999999999988887643 221 123222
Q ss_pred --HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007881 184 --LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 184 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
...+.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.++++++..+. +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 345678888999999998888753 234556666778888889999999999888876544 3444444554443 23
Q ss_pred CHHHHHHHHhhCCCCC------------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhcc
Q 007881 262 SIQDAEIAFNKMPERN------------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRA 328 (586)
Q Consensus 262 ~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~ 328 (586)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+ ..|+ ...+..+...|.+.
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~----~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA----LDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHc
Confidence 4555555554443210 11233334445555666666666666555 2233 33444555555566
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hHHH--------------------------------------------HHHHHHHHh
Q 007881 329 GAVEKGMKIFYSMTLKYGIKPG-AEHY--------------------------------------------ACVVDLLGR 363 (586)
Q Consensus 329 g~~~~a~~~~~~~~~~~~~~p~-~~~~--------------------------------------------~~li~~~~~ 363 (586)
|++++|...++.+.+. .|+ ...+ ..+.+.+..
T Consensus 509 G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666666666555432 121 1111 122334455
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 364 AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 364 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
.|+.++|.++++.-+ ++...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++..
T Consensus 586 ~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666666655332 233455666666777777888888888777777777777777777777777777777777766
Q ss_pred Hh
Q 007881 444 KD 445 (586)
Q Consensus 444 ~~ 445 (586)
.+
T Consensus 664 l~ 665 (1157)
T PRK11447 664 PA 665 (1157)
T ss_pred hc
Confidence 54
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.5e-18 Score=183.76 Aligned_cols=414 Identities=9% Similarity=-0.022 Sum_probs=275.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCChh
Q 007881 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGRPK 93 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 93 (586)
-..+.+.|+++.|...|...++. .|++..|..+...|.+.|++++|+..++...+ | +...|..+..+|...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455667777777777776653 35566666677777777777777777666543 2 3445666666777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007881 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 173 (586)
+|+.-|......+.. +......++..+.. ..+........+.. +++...+..+.. |........+..-++...
T Consensus 212 eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 212 DALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 777766655433211 11111111111111 11222222222221 222222222222 222111111111111111
Q ss_pred CCCh---hhHHHHHHHH---HHcCChHHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007881 174 DKND---VSWCSMLVVY---VQNYEEENGCQMFLTARREG-VEP-KDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 174 ~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
+.+. ..+..+...+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...+...++..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 1111 1111111111 23478999999999998765 334 3445677777788899999999999999887643
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCV 321 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~l 321 (586)
+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+ +.|+ ...+..+
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~----l~P~~~~~~~~l 439 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID----LDPDFIFSHIQL 439 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCccCHHHHHHH
Confidence 466788889999999999999999998754 4567899999999999999999999999988 3354 6677788
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHH
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-S-------VWGALLNA 392 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~ 392 (586)
..++.+.|++++|+..|+...+. .+.+...|+.+...+...|++++|++.|++. .+.|+. . .++..+..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88999999999999999998753 2334788899999999999999999999986 444421 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|++++|..+++++++++|++...+..++.++...|++++|.+.|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444699999999999999999999989999999999999999999999998763
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.5e-19 Score=183.24 Aligned_cols=288 Identities=11% Similarity=0.072 Sum_probs=181.5
Q ss_pred HhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhcccCcHH
Q 007881 157 GKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK---DFMISSVLSACARIAGLEL 230 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~ 230 (586)
...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+.+.|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444221 222344444444444555555554444443221111 1233444444455555555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC------eeHHHHHHHHHHhcCCHHHHHHHHH
Q 007881 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN------LVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
|..++..+.+... .+..+++.++..|.+.|++++|.+.|+.+.+ |+ ...|..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555544322 2344555556666666666666666655543 11 1134456666777888888888888
Q ss_pred HhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007881 303 EMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVDLLGRAGLVDRAYEIIKEM-P 378 (586)
Q Consensus 303 ~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 378 (586)
++.+ . .|+ ...+..+...+.+.|++++|.++|+++... .|+ ...++.++.+|.+.|++++|.+.++++ .
T Consensus 205 ~al~--~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 205 KALA--A--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHh--H--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8876 2 243 456667778888888888888888888643 333 456778888888888999988888887 4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh---cCChHHHHHHHHHHHhCCCccCCc
Q 007881 379 MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA---TGRWEEADLVRKEMKDVGIKKGAG 453 (586)
Q Consensus 379 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 453 (586)
..|+...+..+...+.+.|++++|..+++++.+..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5677777788888899999999999999999988887654 4444444432 568999999999999999988885
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.3e-19 Score=183.73 Aligned_cols=282 Identities=14% Similarity=0.143 Sum_probs=154.6
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChH
Q 007881 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN---VSVCNGLVDFYGKCNEVG 163 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~ 163 (586)
...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344555555555555554321 1233444455555555555555555555544321111 134455555666666666
Q ss_pred HHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhcccCcHHHHHHHH
Q 007881 164 LAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD----FMISSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 164 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~ 236 (586)
+|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++. ..+..+...+.+.|++++|...+.
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666655543 23445556666666666666666666666554322211 123344445556666666666666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC--eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007881 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN--LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
++.+..+. +...+..+...|.+.|++++|.++|+++.+ |+ ..+++.++.+|...|+.++|...++++.+ . .
T Consensus 205 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~--~ 279 (389)
T PRK11788 205 KALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E--Y 279 (389)
T ss_pred HHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--C
Confidence 66654432 344555566666666666666666666553 22 23456666666666666666666666665 2 3
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh---cCChHHHHHHHHhC
Q 007881 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR---AGLVDRAYEIIKEM 377 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m 377 (586)
|+...+..+...+.+.|++++|..+++.+.+. .|+...+..++..+.. .|+.++|+.++++|
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 55555566666666666666666666666532 5666666666655543 34666666666655
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.5e-17 Score=177.15 Aligned_cols=366 Identities=12% Similarity=0.012 Sum_probs=278.0
Q ss_pred hcCCchHHHHHhccCCC------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHH
Q 007881 57 KTGLKDDADKMFDEMPE------RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLG 130 (586)
Q Consensus 57 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 130 (586)
+..+++.-.-+|...++ .+..-...++..+.+.|++++|+.+++........+ ...+..++.+....|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 55566666666666654 122334456777888999999999999988765443 33444555666678999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 007881 131 RQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207 (586)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 207 (586)
.+.++.+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998885 45677888889999999999999999988744 356688888999999999999999999887653
Q ss_pred CCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHH
Q 007881 208 VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAI 284 (586)
Q Consensus 208 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~l 284 (586)
|+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|++..+ .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333222222334778899999999999888776545555566667888899999999999998764 456677888
Q ss_pred HHHHHhcCCHHH----HHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 007881 285 IGGYAHQGHADM----ALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVV 358 (586)
Q Consensus 285 i~~~~~~g~~~~----A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 358 (586)
...|...|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++..... .|+ ...+..+.
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La 325 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ----FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 889999999885 8999999987 3354 668888899999999999999999998753 454 56677788
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 007881 359 DLLGRAGLVDRAYEIIKEM-PMRPTISVWG-ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 436 (586)
..|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++.+..|++. ...+++|
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea 393 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEG 393 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHH
Confidence 9999999999999999987 4556654443 356678899999999999999999988753 2344455
Q ss_pred HHHHHHHHh
Q 007881 437 DLVRKEMKD 445 (586)
Q Consensus 437 ~~~~~~m~~ 445 (586)
...+....+
T Consensus 394 ~~~~~~~~~ 402 (656)
T PRK15174 394 LLALDGQIS 402 (656)
T ss_pred HHHHHHHHH
Confidence 555555544
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.5e-16 Score=173.12 Aligned_cols=396 Identities=8% Similarity=-0.081 Sum_probs=232.7
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcC
Q 007881 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLG 89 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 89 (586)
..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..+...+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3445566677788888888888877633 44555678888888888888888888887432 3455667777778888
Q ss_pred CChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007881 90 GRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
|++++|+..+++.... .| +.. +..+..++...|+.++|...++++++.. +.+...+..+..++.+.|..+.|.+.
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 8888888888888765 33 334 6667777778888888888888888774 34556666677778888888888888
Q ss_pred HhcCCCCChh--------hHHHHHHHHH-----HcCCh---HHHHHHHHHHHHC-CCCCCHh-HHH----HHHHHHhccc
Q 007881 169 FDGIIDKNDV--------SWCSMLVVYV-----QNYEE---ENGCQMFLTARRE-GVEPKDF-MIS----SVLSACARIA 226 (586)
Q Consensus 169 ~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~ 226 (586)
++.... ++. ....++.... ..+++ ++|++.++.+... ...|+.. .+. ..+.++...|
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 877655 211 1111222211 11223 5667777766643 1222221 111 1123344556
Q ss_pred CcHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-----eeHHHHHHHHHHhcCCHHHHH
Q 007881 227 GLELGRSVHAVAVKACVE-GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN-----LVCWNAIIGGYAHQGHADMAL 298 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-----~~~~~~li~~~~~~g~~~~A~ 298 (586)
+.++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+ |. ...+..+..++.+.|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 677777777776665532 221 122245566667777777777666543 11 123444555666667777777
Q ss_pred HHHHHhhhccC---------CCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007881 299 SSFEEMTSMRC---------EAVPNY---VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 299 ~~~~~m~~~~~---------g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
++++++..... .-.|+. ..+..+...+...|+.++|+..++++... .+.+...+..+...+...|+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 77766665100 001221 12334444555556666666666665432 22234555555556666666
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 367 VDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 367 ~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
+++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 66666666555 33343 33444444455555666666666666666666554
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.6e-16 Score=173.09 Aligned_cols=398 Identities=8% Similarity=-0.020 Sum_probs=299.5
Q ss_pred CCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHH
Q 007881 42 IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAF 117 (586)
Q Consensus 42 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 117 (586)
+-++....-.+......|+.++|++++..... .+...+..+...+...|++++|+.+|++.... .| +......+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 44555566677888899999999999998764 33445888999999999999999999998874 34 45566777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChH
Q 007881 118 LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--K-NDVSWCSMLVVYVQNYEEE 194 (586)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 194 (586)
...+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...+++..+ | +...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 788899999999999999999884 44566 88899999999999999999998854 3 4556677888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHh------HHHHHHHHHh-----cccCc---HHHHHHHHHHHHh-CCCCchh--HHHH---HH
Q 007881 195 NGCQMFLTARREGVEPKDF------MISSVLSACA-----RIAGL---ELGRSVHAVAVKA-CVEGNIF--VGSA---LV 254 (586)
Q Consensus 195 ~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~--~~~~---li 254 (586)
+|++.++.... .|+.. ....++.... ..+.+ ++|...++.+.+. ...|+.. .... .+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99998876553 33320 1111222221 11223 6778888888764 2222221 1111 12
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC--eeH--HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccC
Q 007881 255 DMYGKCGSIQDAEIAFNKMPERN--LVC--WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAG 329 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g 329 (586)
..+...|++++|+..|+.+.+.+ ... -..+...|...|++++|+..|+++........+ .......+..++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34457799999999999988632 122 222567899999999999999998762111101 1345566777889999
Q ss_pred CHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007881 330 AVEKGMKIFYSMTLKYG----------IKPG---AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACR 394 (586)
Q Consensus 330 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 394 (586)
++++|..+++.+..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999875310 1123 235567788999999999999999997 3334 5678889999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|+..++++++++|++...+..++..+...|++++|..+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999874
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=5.4e-16 Score=169.07 Aligned_cols=213 Identities=12% Similarity=-0.018 Sum_probs=159.6
Q ss_pred cCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007881 226 AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555555544443 3333333334445678888888888887653 4455666677778888888888888888
Q ss_pred hhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 007881 304 MTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP 381 (586)
Q Consensus 304 m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 381 (586)
..+ .. |+. ..+..+.......|++++|...++...+ +.|+...|..+...+.+.|++++|+..+++. ...|
T Consensus 568 AL~--l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 568 AEQ--RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHh--cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 877 32 443 3333444455566999999999998874 4678888899999999999999999999987 5555
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 382 T-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 382 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+ ...+..+..++...|+.++|+..++++++..|+++..+..++.++...|++++|...+++..+..
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4 55677777789999999999999999999999999999999999999999999999999987643
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.1e-16 Score=170.74 Aligned_cols=321 Identities=8% Similarity=-0.004 Sum_probs=242.7
Q ss_pred HHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCC
Q 007881 50 SAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCS 125 (586)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 125 (586)
.++..+.+.|++++|..+++.... .+...+..++.+....|++++|+..|+++... .| +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 345566788999999988877643 23445555666777789999999999998874 34 4456777777888889
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007881 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII--DK-NDVSWCSMLVVYVQNYEEENGCQMFLT 202 (586)
Q Consensus 126 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (586)
++++|...++.+++.. +.+...+..+...+...|++++|...++.+. .| +...+..+ ..+.+.|++++|+..++.
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999888774 4457788888889999999999998887663 22 33334333 347888999999999998
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH----HHHHHhhCCC---
Q 007881 203 ARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD----AEIAFNKMPE--- 275 (586)
Q Consensus 203 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~--- 275 (586)
+......++......+..++...|+.++|...+..+.+..+. +...+..+...|...|++++ |...|++..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 877543344445555567788889999999999998887654 67778888999999999885 7888888764
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH-H
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE-H 353 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~ 353 (586)
.+...+..+...+.+.|++++|+..+++... . .|+ ...+..+..++.+.|++++|+..|+.+... .|+.. .
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~ 354 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLA--T--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKW 354 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHH
Confidence 3456788888889999999999999999887 2 354 556677788888999999999999888754 55543 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRPT 382 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 382 (586)
+..+..++...|+.++|.+.|++. ...|+
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 444567788999999999999886 33343
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=6e-15 Score=157.73 Aligned_cols=420 Identities=9% Similarity=-0.009 Sum_probs=305.7
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCCh--hhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHH---HHHHcCCChhH
Q 007881 20 SSALHIPVTGKQLHALALKSGQIHDV--FVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYI---SNAVLGGRPKN 94 (586)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~ 94 (586)
..+.|++..|...+.+..+.. |+. .++ .++..+...|+.++|+..+++...|+...+..+. ..+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 357899999999999998865 442 344 8888899999999999999998877555554443 46777899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 007881 95 AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID 174 (586)
Q Consensus 95 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 174 (586)
|+++|+++.+.... |...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999886433 4566667778889999999999999998877 45555565555555556677669999998854
Q ss_pred --C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH------HHHHH-HH----hcccC---cHHHHHHHHH
Q 007881 175 --K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMI------SSVLS-AC----ARIAG---LELGRSVHAV 237 (586)
Q Consensus 175 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~-~~----~~~~~---~~~a~~~~~~ 237 (586)
| +...+..+..++.+.|-...|+++.++-... +.|...-. ...+. +. ..... .+.|..-++.
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 3 4566778888999999999998776543211 11111111 11110 00 01112 2334444444
Q ss_pred HHHh-CCCCc--hhHHHHH---HHHHHhcCCHHHHHHHHhhCCCC----CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 007881 238 AVKA-CVEGN--IFVGSAL---VDMYGKCGSIQDAEIAFNKMPER----NLVCWNAIIGGYAHQGHADMALSSFEEMTSM 307 (586)
Q Consensus 238 ~~~~-~~~~~--~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (586)
+... +..|. .....+. +-++.+.|++.++++.|+.+..+ ...+--++.++|...+++++|+.+|+.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 4431 22222 1222333 44677889999999999999842 2235566889999999999999999999762
Q ss_pred cCC---CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCChHHHH
Q 007881 308 RCE---AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG----------IKPG---AEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 308 ~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 371 (586)
... ..++......|.-++..++++++|..+++.+.+... -.|+ ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 111 122334457889999999999999999999975211 0122 344566788899999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 372 EIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 372 ~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.++++ ... -|...+..+...+...|.+.+|+..++.+..++|++..+....+..+...|+|.+|..+.+...+.
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998 333 478888999999999999999999999999999999999999999999999999999999887664
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.2e-14 Score=158.61 Aligned_cols=427 Identities=10% Similarity=-0.009 Sum_probs=305.3
Q ss_pred CCcccHHHH-HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHh-cCCchHHHHHhccCCCCCcccHHHHHHH
Q 007881 8 PNDFTFPCL-FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK-TGLKDDADKMFDEMPERNLATWNAYISN 85 (586)
Q Consensus 8 p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~ 85 (586)
|+..+.... .+.+...++++.+..++..+.+.+ +.+..-...|-.+|.. .++ ++|..++....+.|+..+..+...
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~ 256 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATA 256 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHH
Confidence 345555555 788999999999999999999987 4445556667778877 466 888888776555678888899999
Q ss_pred HHcCCChhHHHHHHHHHHHCCCC-CChhhHHHH------------------------------HHHHhc-----------
Q 007881 86 AVLGGRPKNAIDAFINLRRTGGE-PDLITFCAF------------------------------LNACSD----------- 123 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l------------------------------l~~~~~----------- 123 (586)
|.+.|+.++|..+++++...-.. |...++.-+ +..+.+
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999988887532111 222222111 111111
Q ss_pred ----------------------------------------------------CCChHHHHHHHHHHHHh-C-CCCChhHH
Q 007881 124 ----------------------------------------------------CSLLQLGRQLHGFLVRS-G-FDGNVSVC 149 (586)
Q Consensus 124 ----------------------------------------------------~~~~~~a~~~~~~~~~~-g-~~~~~~~~ 149 (586)
.|+.++|.+++...... + -..+....
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 337 ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 22233333333333221 0 01123344
Q ss_pred HHHHHHHHhcCC---hHHHHHH-------------------------HhcCCC---C--ChhhHHHHHHHHHHcCChHHH
Q 007881 150 NGLVDFYGKCNE---VGLAKVV-------------------------FDGIID---K--NDVSWCSMLVVYVQNYEEENG 196 (586)
Q Consensus 150 ~~ll~~~~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A 196 (586)
+-|+..|.+.+. ..++..+ +..... + +...|..+..++.. +++++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 456666666655 2222222 111111 1 44566667766666 788889
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007881 197 CQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276 (586)
Q Consensus 197 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 276 (586)
+..|.+.... .|+......+..++...|++++|...++.+.... |+...+..+...+.+.|++++|...|+...+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9988777664 4776554455556678999999999999876653 33344566778889999999999999987764
Q ss_pred CeeHHHHH---HHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hH
Q 007881 277 NLVCWNAI---IGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AE 352 (586)
Q Consensus 277 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 352 (586)
+...++.. .......|++++|+..+++..+ ..|+...+..+..++.+.|++++|+..|+.... ..|+ ..
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~ 644 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSN 644 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHH
Confidence 33333333 2334455999999999999988 458888899999999999999999999999974 3565 67
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
.++.+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....++.....
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 7888888999999999999999987 4445 5678999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007881 431 GRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 431 g~~~~a~~~~~~m~~~g~ 448 (586)
.+++.|.+-+++.-....
T Consensus 725 ~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 725 FNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHhhcCc
Confidence 999999998887765443
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=4.6e-15 Score=158.71 Aligned_cols=354 Identities=8% Similarity=-0.058 Sum_probs=253.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007881 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK 158 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 158 (586)
+......+.+.|++++|+..|++... +.|+...|..+..++.+.|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33456677888999999999988876 46777788888888888899999999998888774 4456778888889999
Q ss_pred cCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----------------------------
Q 007881 159 CNEVGLAKVVFDGIIDKN---DVSWCSMLVVYVQNYEEENGCQMFLTARREG---------------------------- 207 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------- 207 (586)
.|++++|..-|......+ ......++..+.. ..+...........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999887765442111 1111111111111 11111111111100
Q ss_pred ---CCCCH-hHHHHHHHH---HhcccCcHHHHHHHHHHHHhC-CCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C
Q 007881 208 ---VEPKD-FMISSVLSA---CARIAGLELGRSVHAVAVKAC-VEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R 276 (586)
Q Consensus 208 ---~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 276 (586)
..|+. ..+..+... ....+.+++|...+...++.+ ..| ....++.+...|...|++++|...|++..+ |
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00100 000000000 122357889999999988765 222 456788888999999999999999999764 4
Q ss_pred C-eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 007881 277 N-LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEH 353 (586)
Q Consensus 277 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 353 (586)
+ ..+|..+...+...|++++|+..|++..+ . .| +...+..+...+...|++++|...|+...+ +.|+ ...
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~ 435 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALK--L--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFS 435 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHH
Confidence 3 45788888899999999999999999988 3 34 467888899999999999999999999974 3554 677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH-------HH
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL-------LS 424 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~ 424 (586)
+..+...+.+.|++++|+..|++. ...| +...|+.+...+...|++++|+..+++++++.|.+...+.. ..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 888899999999999999999987 4444 46788889999999999999999999999998875433321 12
Q ss_pred HHHhhcCChHHHHHHHHHHHhC
Q 007881 425 NMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+...|++++|.+++++....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc
Confidence 2334479999999999998764
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.4e-13 Score=127.06 Aligned_cols=392 Identities=14% Similarity=0.144 Sum_probs=275.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHh--cCCch-------------------------H
Q 007881 11 FTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSK--TGLKD-------------------------D 63 (586)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~-------------------------~ 63 (586)
.+=+.+++.- ..|.+..+.-+++.|.+.|.+.+..+--.|...-+- ..++- -
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3455666543 467899999999999999988888776666554322 11111 1
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 007881 64 ADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFD 143 (586)
Q Consensus 64 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 143 (586)
|.-+|+.. .++..+|.+||.|+++--..+.|.++|++-.....+.+..+||.++.+-+ +..++++..+|+...+.
T Consensus 196 AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcC
Confidence 22223222 24667899999999999999999999999998888999999999998754 33458899999999999
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHH----hcC----CCCChhhHHHHHHHHHHcCChHH-HHHHHHHHHH----CCCCC
Q 007881 144 GNVSVCNGLVDFYGKCNEVGLAKVVF----DGI----IDKNDVSWCSMLVVYVQNYEEEN-GCQMFLTARR----EGVEP 210 (586)
Q Consensus 144 ~~~~~~~~ll~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p 210 (586)
||..|+|+++++..+.|+++.|.+.+ .+| .+|...+|.-+|..+.+.++..+ |..++.+++. ..++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999998876554 444 56899999999999999988755 4555555543 22333
Q ss_pred ----CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 007881 211 ----KDFMISSVLSACARIAGLELGRSVHAVAVKAC----VEGN---IFVGSALVDMYGKCGSIQDAEIAFNKMPE---- 275 (586)
Q Consensus 211 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 275 (586)
|..-|.+.++.|.+..+.+.|.+++....... +.|+ ...|..+....+....++.-...|+.|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 55678889999999999999999988765421 2222 34566778888899999999999999874
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC---------CHH-----HHHHHH---
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG---------AVE-----KGMKIF--- 338 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g---------~~~-----~a~~~~--- 338 (586)
|+..+-..++.+..-.|.++-.-+++..|+. .|..-+.....-++.-+++.. ++. -|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~--~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKE--YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHH--hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788888888888888888888877 443222222222232233222 000 011111
Q ss_pred ----HHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007881 339 ----YSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPTISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 339 ----~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
.++. ..+-.....++..-.+.|.|+.++|.+++.-. +..|......-|+.+-.+.++...|..+++
T Consensus 509 e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 509 ESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQ 585 (625)
T ss_pred HhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 1121 22334556777778888999999998887665 333444444456666677778888888888
Q ss_pred HHhccC
Q 007881 408 NLFKLD 413 (586)
Q Consensus 408 ~~~~~~ 413 (586)
.+...+
T Consensus 586 ~a~~~n 591 (625)
T KOG4422|consen 586 LASAFN 591 (625)
T ss_pred HHHHcC
Confidence 776554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=3e-13 Score=144.85 Aligned_cols=385 Identities=12% Similarity=0.086 Sum_probs=278.9
Q ss_pred HHHHhcCCchHHHHHhccCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHhcCCC
Q 007881 53 DMYSKTGLKDDADKMFDEMPERNLA---TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF---CAFLNACSDCSL 126 (586)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~ 126 (586)
-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+...+ ..+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3455899999999999998763332 23388888889999999999999987 3433333 333456778899
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHH--cCChHHHHHHHHHHH
Q 007881 127 LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQ--NYEEENGCQMFLTAR 204 (586)
Q Consensus 127 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 204 (586)
+++|.++++++++.. +.+..++..++..|...++.++|++.++++...++.....+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999985 44577788889999999999999999999976555433334445544 566666999999999
Q ss_pred HCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchh------HHHHHHHH-----HHhcCCH---HHHHHHH
Q 007881 205 REGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIF------VGSALVDM-----YGKCGSI---QDAEIAF 270 (586)
Q Consensus 205 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~-----~~~~g~~---~~A~~~~ 270 (586)
+.. +-+...+.....++.+.|....|.++..+-... +.+... ....++.. -....++ +.|..-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 864 335666677888889999888888766542211 110000 00011110 0011222 3344444
Q ss_pred hhCCC-----CCee-HHH----HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007881 271 NKMPE-----RNLV-CWN----AIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 271 ~~m~~-----~~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
+.+.. |... .|. -.+-++...|+..++++.|+.+.. .+.+....+-..+..+|...+.+++|..+|..
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~--~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA--EGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh--cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44332 3222 222 246678889999999999999998 66544455778899999999999999999999
Q ss_pred hHHhcC----CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC-C---------------CCHH-HHHHHHHHHHHcCCH
Q 007881 341 MTLKYG----IKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPM-R---------------PTIS-VWGALLNACRVYGKP 399 (586)
Q Consensus 341 ~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~---------------p~~~-~~~~ll~~~~~~~~~ 399 (586)
+....+ ..++......|.-+|..++++++|..+++++.- . ||-. ....++..+.-.|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 865422 233455567889999999999999999999811 1 2222 234456668889999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.+|++.++++....|.|......++.++...|...+|++.++.....
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999776654
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.4e-13 Score=139.46 Aligned_cols=430 Identities=11% Similarity=0.017 Sum_probs=302.2
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCC--hhhhHHHHHHHHhcCCchHHHHHhccCCC--CCc--ccHHHH
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHD--VFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNL--ATWNAY 82 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l 82 (586)
|++..+.|..-+.--|++..+..+...++....... ...|--+.++|-..|++++|...|.+... +|- ..+--|
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 566677777777777888888888888877642221 23466678888888888888888876554 332 334456
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007881 83 ISNAVLGGRPKNAIDAFINLRRTGGEPD-LITFCAFLNACSDCS----LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYG 157 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 157 (586)
...+.+.|+.+.+...|+...+. .|| ..|...+-..|+..+ ..+.|..++....+.- +.|...|-.+..+|-
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 67788888888888888888764 344 456666666666553 4556666666666553 456667777777666
Q ss_pred hcCChHHHHHHHhc--------CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHh------HHHHHHH
Q 007881 158 KCNEVGLAKVVFDG--------IIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE---GVEPKDF------MISSVLS 220 (586)
Q Consensus 158 ~~g~~~~A~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~ 220 (586)
...-+.. +.+|.. +....+...|.+...+...|++++|...|...... ...+|.. +--.+..
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 5543332 443332 22345667888888899999999999999887654 2233432 2222334
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHH
Q 007881 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 297 (586)
..-..++.+.|.+.|..+++..+. -+..|--+.-+--..+...+|...+....+ .++..|.-+...|.....+..|
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 445667889999999999887543 222232333222233567788888887664 6777787777788888888888
Q ss_pred HHHHHHhhhccCCCCCCHHHHHHHHHHhhc------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007881 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSR------------AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 365 (586)
.+-|....+. ....+|..+..+|.+.|.. .+..++|+++|..+.+. -+.|...-|.+.-.++..|
T Consensus 584 ~k~f~~i~~~-~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 584 KKKFETILKK-TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccHHHHHHhh-hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhhcc
Confidence 8877777664 2334788888788776543 24578899999888752 3446777788888899999
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCchhHHHHHHHHhhcCChHHHHHHHH
Q 007881 366 LVDRAYEIIKEMP--MRPTISVWGALLNACRVYGKPELGRIAADNLFKLD--PNDSGNHVLLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 366 ~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (586)
++.+|.++|.+.. ..-+..+|-.+...|...|++-.|++.|+...+.. .+++.+...|+.++.+.|++.+|.+...
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999872 22345689999999999999999999999988853 4567788899999999999999999888
Q ss_pred HHHhC
Q 007881 442 EMKDV 446 (586)
Q Consensus 442 ~m~~~ 446 (586)
.....
T Consensus 741 ~a~~~ 745 (1018)
T KOG2002|consen 741 KARHL 745 (1018)
T ss_pred HHHHh
Confidence 77654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=4e-13 Score=126.40 Aligned_cols=409 Identities=12% Similarity=0.086 Sum_probs=280.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhhh-HHHHHHHHhcCCchHHHHHhccCCC--CC------cccHHHHHHHH
Q 007881 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVG-CSAFDMYSKTGLKDDADKMFDEMPE--RN------LATWNAYISNA 86 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~ 86 (586)
|.+-|.......+|...++-+++...-|+.... ..+.+.+.+...+.+|++++..... |+ +...|.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344455666778888899989888877776543 3456778888899999998764432 22 22344444568
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--------HHHHHHHHHHh
Q 007881 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS--------VCNGLVDFYGK 158 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--------~~~~ll~~~~~ 158 (586)
.+.|+++.|+..|+...+. .||..+-..|+-++...|+-++.++.|..++.....+|.. .-..|+.--.+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 8999999999999998774 6887765556656667799999999999998764333222 11222222222
Q ss_pred cCC-----------hHHH----HHHHhcCCCCChh---hHH------------------HHHHHHHHcCChHHHHHHHHH
Q 007881 159 CNE-----------VGLA----KVVFDGIIDKNDV---SWC------------------SMLVVYVQNYEEENGCQMFLT 202 (586)
Q Consensus 159 ~g~-----------~~~A----~~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~ 202 (586)
... .+++ .++..-...||-. -|. .-...|.++|+++.|+++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 211 1111 1222222233211 111 112457899999999999887
Q ss_pred HHHCCCCCCHhHHH--HHHHH----------------------------------HhcccCcHHHHHHHHHHHHhCCCCc
Q 007881 203 ARREGVEPKDFMIS--SVLSA----------------------------------CARIAGLELGRSVHAVAVKACVEGN 246 (586)
Q Consensus 203 m~~~g~~p~~~t~~--~ll~~----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (586)
..+..-+.-...-+ +++.. ....|++++|...+.+.+...-...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 76543221111111 11111 1124677888888888776554433
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~ 323 (586)
...|| +.-.+-+.|++++|++.|-++. ..++...-.+...|-...+..+|++++.+... -++.|+..+.-|..
T Consensus 525 ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ilskl~d 600 (840)
T KOG2003|consen 525 EALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHHHHHHHHH
Confidence 33444 3345677888999998887764 35666777777888888888999998877654 23445778888888
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHH
Q 007881 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNAC-RVYGKPEL 401 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~~~~~~ 401 (586)
.|-+.|+-.+|.+.+..--+ -++.+.++..-|..-|....-+++|+.+|++. -++|+.+-|..++..| ++.|++..
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999988765432 34557888888888888899999999999998 5679999999988775 66899999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007881 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
|..+++...+..|.+......|..++...|.
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999998887775
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.7e-12 Score=130.95 Aligned_cols=433 Identities=9% Similarity=-0.016 Sum_probs=274.3
Q ss_pred CCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhc---CCchHHHHHhccCC---CCCccc
Q 007881 5 CISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKT---GLKDDADKMFDEMP---ERNLAT 78 (586)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~ 78 (586)
...||+..- +-.++.+.++.+.|+..|.+..+.. +.++.++-.|--+-... ..+..+..++...- ..|++.
T Consensus 196 ~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~ 272 (1018)
T KOG2002|consen 196 ACKADVRIG--IGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVA 272 (1018)
T ss_pred ccCCCccch--hhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHH
Confidence 345555432 2234567888899999998888764 23333333333222222 23445555554432 257778
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007881 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGE--PDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFY 156 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 156 (586)
.|.|-..|.-.|++..++.+...+...-.. .-...|-.+.+++-..|++++|.+.|-+..+..-..-+..+-.|..+|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 888888888889999999988888654311 123457788888888899999999887776663221134455678889
Q ss_pred HhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007881 157 GKCNEVGLAKVVFDGIID--K-NDVSWCSMLVVYVQNY----EEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
.+.|+++.+...|+.+.. | +..+...+...|+..+ ..+.|..++.+....- +.|...|..+...+-. ++..
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~ 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPW 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChH
Confidence 999999999988888743 2 3455566666676665 4456666666655542 3355566555555443 3333
Q ss_pred HHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCee------HHHHHHHHHHhcC
Q 007881 230 LGRSVHAVAV----KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-------RNLV------CWNAIIGGYAHQG 292 (586)
Q Consensus 230 ~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~------~~~~li~~~~~~g 292 (586)
....++..+. ..+-.+.+...|.+...+...|++++|...|+.... +|.. +--.+...+-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 3355554443 445557788888888888888999888888876542 2321 1222444555567
Q ss_pred CHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007881 293 HADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 293 ~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 371 (586)
+.+.|.+.|..+.+ . -|.. ..|..++...-..+...+|...++.... ....++..++.+.+.+.+...+..|.
T Consensus 511 ~~~~A~e~Yk~Ilk--e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILK--E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hhhHHHHHHHHHHH--H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccc
Confidence 78888888888877 2 2553 4455555444455777777777777764 33444555555666666666666666
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007881 372 EIIKEM----PMRPTISVWGALLNACRV------------YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 372 ~~~~~m----~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
+-|+.. ...+|..+.-+|.+.|.. .+..+.|++.|.++++.+|.|..+-+.++-+++..|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 644433 333566666666665432 2345667777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCC
Q 007881 436 ADLVRKEMKDVGI 448 (586)
Q Consensus 436 a~~~~~~m~~~g~ 448 (586)
|..+|.+.++...
T Consensus 665 A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 665 ARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776554
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=4e-15 Score=143.02 Aligned_cols=256 Identities=17% Similarity=0.136 Sum_probs=112.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007881 184 LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL-SACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
...+.+.|++++|++++++-.....+|+...|..++ ..+-..++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 455566677777777765443332234444444433 3444567778888888777776544 56667777776 68889
Q ss_pred HHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007881 263 IQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 263 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
+++|.+++...-+ ++...+..++..+.+.|+++++.+++++.... ....++...|..+...+.+.|+.++|+..++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999888877643 66677888888899999999999999997752 33456777888888999999999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 341 MTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 341 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
..+. .|+ ......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9864 665 778889999999999999988888776 1234556788999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.....++.++...|+.++|.+++++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=1.2e-11 Score=126.46 Aligned_cols=318 Identities=12% Similarity=0.069 Sum_probs=223.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 007881 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDG---IIDKNDVSWCSMLVVYVQNYEEENGCQMF 200 (586)
Q Consensus 124 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (586)
.|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+-. +...|...|-.+..-..+.|.+++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 377888888887777775 45666777777888888887777766532 34456677777777777778888888777
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHHHHHHHHhhCCC-
Q 007881 201 LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSA----LVDMYGKCGSIQDAEIAFNKMPE- 275 (586)
Q Consensus 201 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~- 275 (586)
.+..+.. +++...+---...|-+.|+...|..-+.++....++.|..-... .+..|...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 7777653 34444444455666777777777777777777665434333322 34455566666777777766543
Q ss_pred ----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh-------------------------ccCCCCCCHHHHHHHHHHhh
Q 007881 276 ----RNLVCWNAIIGGYAHQGHADMALSSFEEMTS-------------------------MRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 276 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------~~~g~~pd~~t~~~ll~a~~ 326 (586)
-+...++.++..|.+...++.|......+.. .+.++.++... .-+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 3445677777777777778888777766654 11122233222 12222344
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHH
Q 007881 327 RAGAVEKGMKIFYSMTLKYGIKP--GAEHYACVVDLLGRAGLVDRAYEIIKEMPM---RPTISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~ll~~~~~~~~~~~ 401 (586)
+....+....+......+ .+.| +...|.-+.++|...|++.+|+++|..+.- .-+...|--+..+|...|.+++
T Consensus 389 ~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 444444444444444333 5333 477899999999999999999999999822 2357799999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|++.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999874
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=6.1e-11 Score=111.30 Aligned_cols=349 Identities=13% Similarity=0.043 Sum_probs=181.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC----CCCcccHHHHHH
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP----ERNLATWNAYIS 84 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~ 84 (586)
+..||+.+|.++++....+.|++++.+........+..++|.+|.+-+-.-+ .+++.+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4456666666666666666666666665555445566666666554322111 33444443 366666666666
Q ss_pred HHHcCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH-HHHHHHHHHH----hCCCC----ChhHHHH
Q 007881 85 NAVLGGRPKN----AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQL-GRQLHGFLVR----SGFDG----NVSVCNG 151 (586)
Q Consensus 85 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~~----~~~~~~~ 151 (586)
+.++.|+++. |++++.+|++-|+.|...+|..+|..+.+.++..+ +..+...+.. ..+.| |...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665543 34455666666666666666666666655555433 2222222221 11221 2334455
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007881 152 LVDFYGKCNEVGLAKVVFDGIID--------K---NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLS 220 (586)
Q Consensus 152 ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 220 (586)
.++.+.+..+.+-|.++-.-... + ...-|..+....++....+.-+..|..|.-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 55555566666655555432211 1 112234455555566666666666666655555566666666666
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhc--CCHHHHH
Q 007881 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ--GHADMAL 298 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~--g~~~~A~ 298 (586)
+....+.++-..+++..++..|...+.....-+...+++.. ..|+...-..+-...++. .-.+...
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665553322222222221111111 012222111121111110 1111112
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH---HHHHhcCChHHHHHHHH
Q 007881 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV---DLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 299 ~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li---~~~~~~g~~~~A~~~~~ 375 (586)
..-.+|.+ .. ......+.++..+.+.|..++|.++|..+.++..--|.....++|+ +.-.+......|...++
T Consensus 510 ~~~~R~r~--~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 510 SQPIRQRA--QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQ 585 (625)
T ss_pred hhHHHHHh--cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 22334444 33 3455666677778899999999999999876655556555666444 44455667777777776
Q ss_pred hC
Q 007881 376 EM 377 (586)
Q Consensus 376 ~m 377 (586)
-|
T Consensus 586 ~a 587 (625)
T KOG4422|consen 586 LA 587 (625)
T ss_pred HH
Confidence 65
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=5.8e-10 Score=110.15 Aligned_cols=425 Identities=13% Similarity=0.107 Sum_probs=326.2
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhH
Q 007881 18 KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 94 (586)
++.......+.|+-++.+.++. ++.+...| -+|++...++.|.++++...+ .+...|.+-...=-.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 3344455666677777777664 23344444 445566678889888887654 477788777666677899888
Q ss_pred HHHHHHH----HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHH
Q 007881 95 AIDAFIN----LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN--VSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 95 A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
..++..+ +...|+..|...|-.=..+|-..|..-....+....+..|++.. ..+|+.-...+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 8887654 56688899999998888899999999999999988888886543 46888888999999999999999
Q ss_pred HhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007881 169 FDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 169 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
|....+ .+...|...+..=-..|..++-..+|++.... ++-....+.......-..|+...|+.++.++.+..+.
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 987644 35667877777767778889999999998875 2334445555556666779999999999999988776
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll 322 (586)
+..++-+-+..-....+++.|+.+|.+... ++...|.--+...--.++.++|++++++..+ .-|+ ...|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk----~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK----SFPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH----hCCchHHHHHHHh
Confidence 788888889999999999999999998764 7777887777766678899999999999887 3466 46777788
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMR--PTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~ 400 (586)
..+-+.++++.|...|..-.+ .++-.+..|-.|.+.=-+.|.+-.|..++++..++ -+...|-..+..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 888889999999988876643 33444678888888888899999999999988433 46788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------------------------CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007881 401 LGRIAADNLFKLDPN------------------------------DSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
.|..+..++++-.|. |+.+...++.++....+++.|++.|.+..+.+ |
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~ 848 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--P 848 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--C
Confidence 998888887764443 45556667777888888888888888887644 5
Q ss_pred CCceeee
Q 007881 451 GAGCSWI 457 (586)
Q Consensus 451 ~~~~~~~ 457 (586)
+.|-.|.
T Consensus 849 d~GD~wa 855 (913)
T KOG0495|consen 849 DNGDAWA 855 (913)
T ss_pred ccchHHH
Confidence 5555553
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.6e-11 Score=123.53 Aligned_cols=285 Identities=11% Similarity=0.001 Sum_probs=166.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH--HHHHHHHHhcCChHHHH
Q 007881 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVC--NGLVDFYGKCNEVGLAK 166 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~g~~~~A~ 166 (586)
.|+++.|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+.++.+. .|+...+ ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 477777776665544321111 112222233335667777777777776654 3443222 23355666667777776
Q ss_pred HHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCC
Q 007881 167 VVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACV 243 (586)
Q Consensus 167 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (586)
..+++..+ .++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 66666533 23445556666666667777777666666665433211 111000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007881 244 EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
...|..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++++..+ . .||... .
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~--~~~~~l--~ 299 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--R--QYDERL--V 299 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c--CCCHHH--H
Confidence 01122223223333445555566666543 4556666777777777777777777777765 2 244421 1
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCH
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~ 399 (586)
++.+....++.+++.+..+...++ .+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 233334557777777777777654 2233556677777788888888888888776 6667777777777778888888
Q ss_pred HHHHHHHHHHhcc
Q 007881 400 ELGRIAADNLFKL 412 (586)
Q Consensus 400 ~~a~~~~~~~~~~ 412 (586)
++|...+++.+.+
T Consensus 378 ~~A~~~~~~~l~~ 390 (398)
T PRK10747 378 EEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888777664
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=1.5e-11 Score=125.09 Aligned_cols=422 Identities=10% Similarity=-0.000 Sum_probs=235.0
Q ss_pred CccCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHH
Q 007881 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWN 80 (586)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 80 (586)
|+..|+.||.+||.++|..|+..|+.+.|- +|..|.-...+.+..+++.++....+.++.+.+. +|...+|+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt 87 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYT 87 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHH
Confidence 345799999999999999999999999988 9999988888888899999999999999887765 77888999
Q ss_pred HHHHHHHcCCChhHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhcCC-ChH------HHHHHHHHHHHhCC-CC
Q 007881 81 AYISNAVLGGRPKNAIDAFIN-LR-------RTGGEPDLITFCAFLNACSDCS-LLQ------LGRQLHGFLVRSGF-DG 144 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~~~------~a~~~~~~~~~~g~-~~ 144 (586)
.|..+|.+.|+... ++..++ |. ..|+.--..-|-..+++|-..- +.. --+.++...++.+. .|
T Consensus 88 ~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999765 333333 21 1222111111111111111100 000 00111111222110 01
Q ss_pred ChhHHHH-H--HHHH-HhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007881 145 NVSVCNG-L--VDFY-GKCNEVGLAKVVFDGIID-KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL 219 (586)
Q Consensus 145 ~~~~~~~-l--l~~~-~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 219 (586)
...-++. . ++-. .-...+++-...-....+ ++..++.+.+..-..+|+.+.|..++.+|++.|++.+.+-|..++
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 0000000 0 1000 001112222222222222 555666666666666666666666666666666666665555555
Q ss_pred HHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---------------------------------------
Q 007881 220 SACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC--------------------------------------- 260 (586)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------------------------------- 260 (586)
-+ .++......+..-|...|+.|+..|+.-.+-...+.
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 33 555555555566666666666655554433333322
Q ss_pred -------------------------------CCHHHHHHHHhhCCC-------CCeeHHHHHHHHHHhcCCHHHHHHHHH
Q 007881 261 -------------------------------GSIQDAEIAFNKMPE-------RNLVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 261 -------------------------------g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
|+-++.+++-..+.. .++..|..++. ++|+
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------------qyFr 391 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------------QYFR 391 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------------HHHH
Confidence 222222222222211 11222222222 2222
Q ss_pred Hhhhc--------c-------------------CCCCCCHH----------------------------HHHHHHHHhhc
Q 007881 303 EMTSM--------R-------------------CEAVPNYV----------------------------TLVCVLSACSR 327 (586)
Q Consensus 303 ~m~~~--------~-------------------~g~~pd~~----------------------------t~~~ll~a~~~ 327 (586)
+.... + ....||.. .-+.++..|..
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 22210 0 00112211 11222233333
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHH
Q 007881 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP-----MRPTISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~~~~~~a 402 (586)
.-+..+++..-+.. +..-+ ...|..||+.+....+.+.|..+.++.. ..-|..-+..+...+.+.+....+
T Consensus 472 e~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 33333333322222 11111 2578899999999999999999999882 224566778888889999999999
Q ss_pred HHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007881 403 RIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 403 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
..+++++.+.- |.-.....-+.+..+..|+.+...++++-+...|+.-
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99988888743 3334555667777788999999999999999988866
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=2.4e-10 Score=117.18 Aligned_cols=349 Identities=12% Similarity=0.132 Sum_probs=263.5
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccC---CCCCcccHHHHHHHHHcCCChhHH
Q 007881 19 ASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEM---PERNLATWNAYISNAVLGGRPKNA 95 (586)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 95 (586)
.+...|++++|.+++.++++.. +.....|-.|...|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3445599999999999999986 677889999999999999999998776433 335778899999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChHHHHHHHhc
Q 007881 96 IDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS----VCNGLVDFYGKCNEVGLAKVVFDG 171 (586)
Q Consensus 96 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~ 171 (586)
.-.|.+..+..+ ++...+--=...|-+.|+...|...+.++.....+.|.. .--..+..|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988642 244444445566888999999999999998885322322 223345667777888999998887
Q ss_pred CCC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----------------------HHH----HHHH
Q 007881 172 IID--K---NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF----------------------MIS----SVLS 220 (586)
Q Consensus 172 ~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~~----~ll~ 220 (586)
... . +...++.++..|.+...++.|......+......+|.. .|. -+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 654 2 44578899999999999999999988887622222221 111 1223
Q ss_pred HHhcccCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCH
Q 007881 221 ACARIAGLELGRSVHAVAVKAC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHA 294 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~ 294 (586)
++.+....+....+........ +..++..|.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4455666666777777777766 555677889999999999999999999999875 4677999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhH-------HhcCCCCChHHHHHHHHHHHhcCC
Q 007881 295 DMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMT-------LKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
++|.+.|+.... ..|+ ...-.+|-+.+.+.|+.++|.+.+..+. +..+..|+.....-..+.|.+.|+
T Consensus 466 e~A~e~y~kvl~----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 466 EEAIEFYEKVLI----LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHh----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999999988 3455 4455567777889999999999998853 111344555555666677888888
Q ss_pred hHHHHHH
Q 007881 367 VDRAYEI 373 (586)
Q Consensus 367 ~~~A~~~ 373 (586)
.++=++.
T Consensus 542 ~E~fi~t 548 (895)
T KOG2076|consen 542 REEFINT 548 (895)
T ss_pred HHHHHHH
Confidence 7764433
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=2.2e-09 Score=106.18 Aligned_cols=430 Identities=15% Similarity=0.065 Sum_probs=259.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--------CCcc----------
Q 007881 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--------RNLA---------- 77 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~---------- 77 (586)
|.-++++...++.|+.++....+. ++.+..+|.+-...=-..|..+...+++++-.. -+..
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 556677778888888888887653 577777887776666777777777777654210 1111
Q ss_pred ---------------------------cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHH
Q 007881 78 ---------------------------TWNAYISNAVLGGRPKNAIDAFINLRRTGGEP-DLITFCAFLNACSDCSLLQL 129 (586)
Q Consensus 78 ---------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 129 (586)
+|+.--..|.+.+.++-|..+|...++. -| +...|......=-..|..+.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence 3333333444444445555555544442 22 22233333333333455555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 007881 130 GRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206 (586)
Q Consensus 130 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (586)
...+++.++..- +.....|-....-+...|++..|+.++++..+ .+...|-+-+..-..+.++++|..+|.+....
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 555555555542 22334444445555556666666665555422 23445555556666666666666666655542
Q ss_pred CCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHH
Q 007881 207 GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNA 283 (586)
Q Consensus 207 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~ 283 (586)
.|+...|.--+..---.++.++|.+++++.++.-+. -...|-.+...+-+.++++.|++.|..-.+ | .+..|-.
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 344444433333333455666666666665554322 344555566666666666666666655443 3 2345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007881 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 363 (586)
+...--+.|..-.|..++++... .+ +-|...|...+..-.+.|..++|..+.....++ .+.+-..|..-|.+..+
T Consensus 725 LakleEk~~~~~rAR~ildrarl--kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARL--KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHh--cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccC
Confidence 55555556666666666666655 22 124556666666666666666666666666543 34445556666666666
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 364 AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 364 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
.++-..+.+.+++.. .|..+.-++...+....+++.|...|.++.+.+|++..+|..+...+...|.-++-.+++.+.
T Consensus 800 ~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred cccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666555555555543 355566666777888889999999999999999999999999999999999999999999888
Q ss_pred HhCCCccCCceeeeeeCC
Q 007881 444 KDVGIKKGAGCSWISVKN 461 (586)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~ 461 (586)
... .|.-|..|..+..
T Consensus 878 ~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 878 ETA--EPTHGELWQAVSK 893 (913)
T ss_pred hcc--CCCCCcHHHHHhh
Confidence 763 4667778876543
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=9e-11 Score=112.09 Aligned_cols=214 Identities=16% Similarity=0.083 Sum_probs=176.7
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHH
Q 007881 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSS 300 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 300 (586)
-.|+.-.+.+-++..++..+.++. .|--+..+|....+-++..+.|+...+ .|..+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888899999999988766443 365667789999999999999998764 5667888878888888999999999
Q ss_pred HHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007881 301 FEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P 378 (586)
Q Consensus 301 ~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 378 (586)
|++.+. +.|+ ...|..+..+..+.+.++++...|++.+++ ++--++.|+.....+...+++++|.+.|+.. .
T Consensus 417 F~Kai~----L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAIS----LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999987 4464 678888888889999999999999999875 4555889999999999999999999999986 4
Q ss_pred CCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 379 MRPT---------ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 379 ~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.|+ +.+-.+++-.-. .+++..|..+++++.+++|....+|..|+.+-.+.|+.++|.++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4443 223333333333 38999999999999999999999999999999999999999999998653
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=4.5e-11 Score=120.34 Aligned_cols=275 Identities=9% Similarity=0.031 Sum_probs=202.8
Q ss_pred cCChHHHHHHHhcCCCC--Chhh-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH--HHHHHHhcccCcHHHHH
Q 007881 159 CNEVGLAKVVFDGIIDK--NDVS-WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS--SVLSACARIAGLELGRS 233 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 233 (586)
.|+++.|++.+....+. ++.. |-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765442 2222 322234447888888888888888763 45554333 23456677888899999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe-----------eHHHHHHHHHHhcCCHHHHHHHHH
Q 007881 234 VHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNL-----------VCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
.++.+.+..+. +..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888887755 677888888999999999999988888875221 133344444444555667777777
Q ss_pred HhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 007881 303 EMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP 381 (586)
Q Consensus 303 ~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 381 (586)
...+ ..+.+......+..++...|+.++|..++....+. .|+.... ++.+....++.+++++.+++. ...|
T Consensus 254 ~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7754 13446778889999999999999999999988753 5555322 233334569999999999888 4455
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 382 T-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+ ...+.++...|...+++++|...|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 4567788888999999999999999999999985 5678999999999999999999997654
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1.5e-10 Score=117.17 Aligned_cols=223 Identities=12% Similarity=-0.002 Sum_probs=114.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHH-------HHHHH
Q 007881 184 LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS-------ALVDM 256 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~ 256 (586)
...+...|++++|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+...... .+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444445555555554444432 1122334444444445555555555555554443322111111 11111
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHH---HHHHHHhhccCC
Q 007881 257 YGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTL---VCVLSACSRAGA 330 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~---~~ll~a~~~~g~ 330 (586)
-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+ . .||.... ..........++
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~--~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--K--LGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--h--CCCcccchhHHHHHhhhcCCCC
Confidence 1111223344444544443 3666777777777778888888888877776 2 2444321 111112233456
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007881 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE--M-PMRPTISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.++++
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666654322222113445666667777777777777773 2 445666666666666777777777776666
Q ss_pred HHhc
Q 007881 408 NLFK 411 (586)
Q Consensus 408 ~~~~ 411 (586)
+.+.
T Consensus 395 ~~l~ 398 (409)
T TIGR00540 395 DSLG 398 (409)
T ss_pred HHHH
Confidence 6544
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=9.6e-10 Score=104.58 Aligned_cols=314 Identities=10% Similarity=0.045 Sum_probs=225.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhH-HHHHHHHHHcCChHHHHHH
Q 007881 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSW-CSMLVVYVQNYEEENGCQM 199 (586)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~ 199 (586)
+.+.|..+.|...+...+.. -+..|.+.+...--..+.+.+..+-...+..+...- --+..++....+.+++++-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666555433 122333333333334444444444333332211111 1234556666677888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHH-HHHHHhhCCCC
Q 007881 200 FLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE--GNIFVGSALVDMYGKCGSIQD-AEIAFNKMPER 276 (586)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 276 (586)
.......|++-+...-+-...+.....++++|..+|+++.+..+- .|..+|+.++-.--.+.++.- |..++ .+.+-
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKy 328 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKY 328 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccC
Confidence 888888776655554455555566778999999999999987532 266777766544333333332 33333 23334
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007881 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
-+.|...+.+-|.-.++.++|...|++..+ +.|. ...|+.+..-|....+...|++-++.+++ -.+.|-..|-
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALk----LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWY 402 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALK----LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWY 402 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHh----cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHh
Confidence 456666777778889999999999999988 3355 56788888899999999999999999974 2244678999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|.++...+..+...+..|+.+|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999999998 6666 7789999999999999999999999999999887889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007881 434 EEADLVRKEMKD 445 (586)
Q Consensus 434 ~~a~~~~~~m~~ 445 (586)
++|...+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=2.8e-13 Score=130.23 Aligned_cols=254 Identities=12% Similarity=0.083 Sum_probs=93.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007881 83 ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAF-LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
-..+.+.|++++|++++++-......|+...|-.+ ...+...++.+.|.+.++.+.+.+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 34455666666666666544333223444443333 333444566777777777766654 2244555556655 56677
Q ss_pred hHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcccCcHHHHHHHHHH
Q 007881 162 VGLAKVVFDGII--DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VEPKDFMISSVLSACARIAGLELGRSVHAVA 238 (586)
Q Consensus 162 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 238 (586)
+++|.+++...- .++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777666542 2455566677777777788888887777766432 3345566666777777788888888888888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007881 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
++..+. |..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++..+ .. +.|.
T Consensus 173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~-p~d~ 248 (280)
T PF13429_consen 173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LN-PDDP 248 (280)
T ss_dssp HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HS-TT-H
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cc-cccc
Confidence 777655 56677777888888888877666666554 25667777788888888888888888888776 22 2256
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
.....+..++...|+.++|..+...+.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 677777778888888888887776654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.4e-11 Score=122.16 Aligned_cols=275 Identities=15% Similarity=0.070 Sum_probs=212.2
Q ss_pred ChHHHHHHHhcCCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007881 161 EVGLAKVVFDGIID--KND-VSWCSMLVVYVQNYEEENGCQMFLTARREG--VEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 161 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
+..+|...|..++. +|. .....+..+|...+++++|.++|+...+.. ..-+...|.++|..+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45678888887643 233 334557788999999999999999987642 11255678877765532 1222223
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 007881 236 -AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER---NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEA 311 (586)
Q Consensus 236 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~ 311 (586)
+.+++.. +-.+.+|-++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~ 484 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----V 484 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----C
Confidence 2333333 236789999999999999999999999998763 557888887788888999999999998876 3
Q ss_pred CCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007881 312 VPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 312 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
.|. ...|-.+...|.+.++++.|.-.|+.+. .+.|. .+....+...+.+.|+.++|+++++++ .+.| |+..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 343 3456678889999999999999999986 56775 556667778899999999999999998 4443 444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
--...+...+++++|++.++++.++-|++...|.+++.+|.+.|+.+.|..-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455667778999999999999999999999999999999999999999999888876643
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-10 Score=109.72 Aligned_cols=249 Identities=11% Similarity=0.084 Sum_probs=176.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007881 186 VYVQNYEEENGCQMFLTARREGV--EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
+.-...++++|+.+|+++.++.. --|..+|+.++-.-.....+.---+....+- +--+.|...+.+-|+-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhH
Confidence 34455677777777777776531 1255677766654332222211111111111 12344666777888888888
Q ss_pred HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007881 264 QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 264 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
++|...|++..+ ....+|+.|..-|....+...|++.+++..+ .. +-|...|-.|..+|.-.+...-|+-+|++
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC-chhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 999999988765 3456788888889999999999999998887 22 23678888899999999999999999988
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc------
Q 007881 341 MTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFK------ 411 (586)
Q Consensus 341 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------ 411 (586)
.. .++| |...|.+|.+.|.+.+++++|++-|.+. .-..+...+..|...+-+.++.++|.+.+++-++
T Consensus 424 A~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg 500 (559)
T KOG1155|consen 424 AL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG 500 (559)
T ss_pred HH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 86 3455 5788899999999999999999998887 2223557888888999999999999988888777
Q ss_pred -cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 412 -LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 412 -~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+|....+...|+.-+.+.+++++|..+.....
T Consensus 501 ~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 501 EIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 234344455567888888999999887765544
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.1e-10 Score=118.26 Aligned_cols=292 Identities=11% Similarity=-0.029 Sum_probs=210.4
Q ss_pred HHHHHHHHH--cCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007881 79 WNAYISNAV--LGGRPKNAIDAFINLRRTGGEPDLI-TFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDF 155 (586)
Q Consensus 79 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 155 (586)
...+..+.. ..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+..+.+....+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344555543 579999999999887664 45433 3344456677889999999999998776422223344556888
Q ss_pred HHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH---hcccCcH
Q 007881 156 YGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC---ARIAGLE 229 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~ 229 (586)
+...|+++.|...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+. ...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998854 356678889999999999999999999999987543332211111221 2222333
Q ss_pred HHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeH---HHHHHHHHHhcCCHHHHHHHH
Q 007881 230 LGRSVHAVAVKACVE---GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVC---WNAIIGGYAHQGHADMALSSF 301 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~~~ 301 (586)
.+.+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+ ||... +..........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 334455555554432 3788889999999999999999999999875 54432 122222334457888999999
Q ss_pred HHhhhccCCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 302 EEMTSMRCEAVPNY---VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 302 ~~m~~~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
++..+ ..|+. ....++...|.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk----~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAK----NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHH----hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88877 23554 4556888999999999999999995322 256899999999999999999999999999874
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=2e-11 Score=121.17 Aligned_cols=244 Identities=12% Similarity=0.118 Sum_probs=192.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH-HH
Q 007881 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACV--EGNIFVGSALVDMYGKCGSIQD-AE 267 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~ 267 (586)
-+..+|+..|...... +.-.......+..+|...+++++++.+|+.+.+..+ ..+..+|++.+--+-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568899999885443 333445666778899999999999999999987542 2267788877655443322222 22
Q ss_pred HHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC
Q 007881 268 IAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG 346 (586)
Q Consensus 268 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 346 (586)
.+.+. ....+.+|.++..+|..+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+
T Consensus 412 ~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 412 DLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 23332 235678999999999999999999999999988 456 57889888888888999999999998775
Q ss_pred CCCChHHHHH---HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH
Q 007881 347 IKPGAEHYAC---VVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 347 ~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 421 (586)
..|..+|++ |.-.|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.|+|+++++++..++|.|+-.-+
T Consensus 483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 345556654 556789999999999999998 6666 4556666777789999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHh
Q 007881 422 LLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
--+.++...+++++|...++++++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999999987
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2e-09 Score=105.04 Aligned_cols=419 Identities=10% Similarity=-0.034 Sum_probs=290.2
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhcc--CCCCCcccHHHHHHHHHcCC
Q 007881 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDE--MPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g 90 (586)
+..+++-+....++..|.-+-+.+...+ .|+..---+..+|.-.|+++.|..+... +.+.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555566666766666665544 3444444466777777888888877653 45678888888888888899
Q ss_pred ChhHHHHHHH----HHHH------C-C--CCCChhh----HHHHHH-------HHhcCCChHHHHHHHHHHHHhCCCCCh
Q 007881 91 RPKNAIDAFI----NLRR------T-G--GEPDLIT----FCAFLN-------ACSDCSLLQLGRQLHGFLVRSGFDGNV 146 (586)
Q Consensus 91 ~~~~A~~~~~----~m~~------~-g--~~p~~~t----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~g~~~~~ 146 (586)
++++|+.++. .+.. . + +.+|..- -+.-.+ .+....+.++|+..+.+++... .
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D----~ 172 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD----A 172 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc----h
Confidence 9999998887 2211 0 0 1122111 111111 2344455677777777665442 2
Q ss_pred hHHHHHH---HHHHh-----------------c-CChHHHHHHHhc----CC----------------CCChhhHHHHHH
Q 007881 147 SVCNGLV---DFYGK-----------------C-NEVGLAKVVFDG----II----------------DKNDVSWCSMLV 185 (586)
Q Consensus 147 ~~~~~ll---~~~~~-----------------~-g~~~~A~~~~~~----~~----------------~~~~~~~~~li~ 185 (586)
..+.++. ....- + .+.+.-+.+|+- +. +.++.....-..
T Consensus 173 ~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad 252 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD 252 (611)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence 2222221 11110 0 011111222221 10 013333344455
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007881 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (586)
-+...+++.+..+++....+.. ++....+..-|.++...|+..+-..+-..+++.-+. ...+|-++.-.|.-.|+.++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHH
Confidence 6778899999999999988753 556666666677888889888877777888887655 67788888888888999999
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|++.|.+... .-...|-....+|+-.|..|+|+..+...-+.=.| ....+.-+.--|.+.++.+.|.++|.+..
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999998664 33468999999999999999999998877652112 22233344456888999999999999886
Q ss_pred HhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CC------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007881 343 LKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PM------RP-TISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 343 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
++-|+ +...+-+.-.....+.+.+|..+|+.. ++ ++ -..+++.|..+|++.+.+++|+..+++.+.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 56664 667777777777888999999999876 11 11 2456888999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 413 DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.|.+..+|..++-+|...|+++.|.+.|.+...
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999998754
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.1e-09 Score=103.67 Aligned_cols=392 Identities=12% Similarity=0.053 Sum_probs=258.3
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCC----CCcccHH-HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHH---
Q 007881 48 GCSAFDMYSKTGLKDDADKMFDEMPE----RNLATWN-AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN--- 119 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--- 119 (586)
...|..-|.-.....+|+..++-+.. ||..... .+-..+.+...+.+|++.|+-.+..-+..+..+-.-+++
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 34455566666777888888876654 3332211 133457788899999999987766533334444433443
Q ss_pred -HHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----------------CChhhHHH
Q 007881 120 -ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID----------------KNDVSWCS 182 (586)
Q Consensus 120 -~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~ 182 (586)
.+.+.|+++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|..|.. |+....|.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 467889999999999999887 68887777777788888999999999988732 12222222
Q ss_pred HH-----HHHHHc--CChHHHHHHHHHHHHCCCCCCHhH-HHH--------------------HHHHHhcccCcHHHHHH
Q 007881 183 ML-----VVYVQN--YEEENGCQMFLTARREGVEPKDFM-ISS--------------------VLSACARIAGLELGRSV 234 (586)
Q Consensus 183 li-----~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t-~~~--------------------ll~~~~~~~~~~~a~~~ 234 (586)
-| .-.-+. .+.++++-.--++...-+.||... +.. -..-+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 22 111111 112233322223333223343210 000 11234567889999988
Q ss_pred HHHHHHhCCCCchhHHHHHHHH------------------------------------HHhcCCHHHHHHHHhhCCCCCe
Q 007881 235 HAVAVKACVEGNIFVGSALVDM------------------------------------YGKCGSIQDAEIAFNKMPERNL 278 (586)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~------------------------------------~~~~g~~~~A~~~~~~m~~~~~ 278 (586)
+.-..+..-+.-...-|.|-.. -...|++++|.+.+.+....|.
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 8777654322111111111110 0124778888888888776665
Q ss_pred eHHHHHHH---HHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007881 279 VCWNAIIG---GYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 279 ~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
..-.+|.. .+-..|+.++|++.|-++.. . +.-+...+..+.+.|-...+..+|++++.+... -++.|+.+.+
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~--i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ils 596 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHA--I-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILS 596 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--H-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHH
Confidence 54444332 35678999999999988754 1 234567777888889999999999999988752 4555688999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
-|.+.|-+.|+-.+|.+..-+- .. .-+..+..-|..-|....-.+.++..|+++.-+.|+...-...++..+.+.|++
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999998876554 32 336667666777778888889999999999999998655555666777889999
Q ss_pred HHHHHHHHHHHhC
Q 007881 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
..|.++++....+
T Consensus 677 qka~d~yk~~hrk 689 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=7.1e-09 Score=98.92 Aligned_cols=370 Identities=12% Similarity=0.106 Sum_probs=213.2
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC--CCCcccHHHHHHHHHcCC
Q 007881 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP--ERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g 90 (586)
|...+..-.+......|+.++++.+..-...| ..|-..+.+=-..|++..|.++|+.-. +|+..+|++.|.-=.+..
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Confidence 33344445566677788888888776532222 344445555556788888888887643 488889999998888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHhcCChHHHHHH
Q 007881 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRS-GF-DGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.++.|..+|++..- +.|+..+|.--.+-=-+.|....+.++++.+++. |- ..+...+++....=.++..++.|.-+
T Consensus 189 eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 189 EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999988876 4588888887777777888888888888887764 21 11233455555555566666766666
Q ss_pred Hhc----CCCC-------------------------------------------ChhhHHHHHHHHHHcCChHHHHHHHH
Q 007881 169 FDG----IIDK-------------------------------------------NDVSWCSMLVVYVQNYEEENGCQMFL 201 (586)
Q Consensus 169 ~~~----~~~~-------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (586)
|.- ++.. |-.+|--.+..--..|+.+...++|+
T Consensus 267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 542 2211 22233334444444556666666665
Q ss_pred HHHHCCCCCCH-------hHHHHHHHHH---hcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcCCHHHHH
Q 007881 202 TARREGVEPKD-------FMISSVLSAC---ARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG----KCGSIQDAE 267 (586)
Q Consensus 202 ~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~ 267 (586)
+.... ++|-. ..|..+=-+| ....+.+.++++++..++. ++...+++.-+=-+|+ ++.++..|+
T Consensus 347 rAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~AR 424 (677)
T KOG1915|consen 347 RAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGAR 424 (677)
T ss_pred HHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHH
Confidence 55543 33311 1222222222 1234555566666555552 2223344443333332 345566666
Q ss_pred HHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007881 268 IAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 268 ~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
+++..... |-.-++..-|..-.+.+++|.+..++++.++ .+ | |..++......=...|+.+.|..+|.-++..
T Consensus 425 kiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 425 KILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FS--PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 66655442 5555555555555566666666666666665 22 3 3455555555555566666666666666544
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007881 345 YGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLN 391 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 391 (586)
..+......|.+.|+-=...|.++.|..+++++ ...+...+|-++..
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 333333445555555555666666666666665 22334445554443
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1e-08 Score=97.85 Aligned_cols=382 Identities=12% Similarity=0.083 Sum_probs=278.2
Q ss_pred hcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 007881 57 KTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQL 133 (586)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 133 (586)
..+++..|.++|+.... +++..|---+..=.++..+..|..++++....=+..|..-|.. +..=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHHHHH
Confidence 35667789999998765 6677777778888889999999999999877534444433322 2233456899999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 007881 134 HGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI--IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK 211 (586)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 211 (586)
|+.-.+. .|+...|++.|+.=.+-..++.|..++++. ..|++.+|--...-=.+.|....|..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 9987765 899999999999999999999999999986 5688999988888888899999999999887653 223
Q ss_pred HhHHHHHHHHH----hcccCcHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHH--------hhCCC---
Q 007881 212 DFMISSVLSAC----ARIAGLELGRSVHAVAVKACVEGN-IFVGSALVDMYGKCGSIQDAEIAF--------NKMPE--- 275 (586)
Q Consensus 212 ~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~--- 275 (586)
...-..+..++ .+....+.|.-++...+..=++.. ...|..+...=-+-|+-.....+. +.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 33333333333 456678889999988887654432 345555555545566654443332 22222
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-------HHHHHHHHHh---hccCCHHHHHHHHHHhHHhc
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-------VTLVCVLSAC---SRAGAVEKGMKIFYSMTLKY 345 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~ 345 (586)
-|-.+|--.+..-...|+.+...++|++.+. +++|-. ..|.-+=-+| ....+++.+.++|+...+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa---nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA---NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc---cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 3556777777777778999999999999986 466632 1222222222 356788899999988864
Q ss_pred CCCCChHHHHHHHHHH----HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007881 346 GIKPGAEHYACVVDLL----GRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 346 ~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
-++....++.-+=-+| .++.++..|.+++... +.-|-..++...|..-.+.++++....++++.++.+|.+..++
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 3343455555444343 4678888999988876 7778888888888888888899999999999999999988888
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 421 VLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
.-.+..-...|+++.|..+|+...+...
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 8888888888999999999988877654
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=6e-10 Score=101.24 Aligned_cols=264 Identities=14% Similarity=0.192 Sum_probs=144.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCChHHH
Q 007881 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG-FDGN--VSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A 165 (586)
+.++++|.++|-+|.+... -+..+--+|-+.+.+.|..+.|..+|..+.++. ++.+ ....-.|..-|.+.|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4678889999988877321 133345567777888888999999888877652 1111 22344566677788888888
Q ss_pred HHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcccCcHHHHHHHHHH
Q 007881 166 KVVFDGIIDKND---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF----MISSVLSACARIAGLELGRSVHAVA 238 (586)
Q Consensus 166 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~ 238 (586)
+.+|..+.+... .....|+..|-+..+|++|++.-+++.+.+-++..+ .|--+........+.+.|...+...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888877766333 344556777888888888888777777655433322 1122222222333444444444444
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HH
Q 007881 239 VKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YV 316 (586)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~ 316 (586)
.+.+++ .+..--.+.+. +...|++..|++.++...+ .+ |+ ..
T Consensus 207 lqa~~~-cvRAsi~lG~v-------------------------------~~~~g~y~~AV~~~e~v~e--Qn--~~yl~e 250 (389)
T COG2956 207 LQADKK-CVRASIILGRV-------------------------------ELAKGDYQKAVEALERVLE--QN--PEYLSE 250 (389)
T ss_pred HhhCcc-ceehhhhhhHH-------------------------------HHhccchHHHHHHHHHHHH--hC--hHHHHH
Confidence 443332 22222233333 4455555555555555555 22 32 23
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH-hCCCCCCHHHHHHHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIK-EMPMRPTISVWGALLNA 392 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~~ 392 (586)
+...|..+|.+.|+.+++..++..+.+. .++...-..+.+.-....-.+.|...+. .+.-+|+...+..|+..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 4445555555556655555555555432 2333333333333333333344433332 33455666666666555
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.5e-12 Score=88.10 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 007881 74 RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD 123 (586)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 123 (586)
||+++||++|++|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=2.2e-10 Score=106.94 Aligned_cols=197 Identities=16% Similarity=0.071 Sum_probs=162.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+ .. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC-CCCHHHHHHHH
Confidence 456677788899999999999999987653 3456778888889999999999999999987 32 23456777888
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
..+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999998754222233566777888999999999999999987 3334 4567888888899999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+|...++++.+..|+++..+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999888888888899999999999999999888765
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=4.9e-11 Score=121.46 Aligned_cols=272 Identities=15% Similarity=0.121 Sum_probs=197.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007881 198 QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN 277 (586)
Q Consensus 198 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 277 (586)
.++-.|...|+.|+.+||.++|.-|+..|+.+.|- +|..|.-.....+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35667888999999999999999999999999999 9999988888888999999999999999887775 788
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
..+|+.+..+|..+|+... ++..++- ...+...++..|.-..-..++..+.-..+.-||.. ..
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqd-------------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ 145 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQD-------------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NA 145 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHH-------------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HH
Confidence 8999999999999999865 3333331 11244455666666666666665533334555544 35
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 007881 358 VDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGK-PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 436 (586)
+..+.-.|.++.+++++..+|...-......++.-+..... +++-....+...+ . .++.+|..+...-..+|+.+.|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhH
Confidence 56667788899999999998654211111223555544443 3333333444444 3 4578888888888899999999
Q ss_pred HHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhh
Q 007881 437 DLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEK 511 (586)
Q Consensus 437 ~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~ 511 (586)
..++..|+++|++.++...|..+-+ .+....++.+++-|++.|+.||..|....+.++..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 9999999999999998888866532 11122356788999999999999987665555544
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=1.4e-08 Score=95.34 Aligned_cols=295 Identities=14% Similarity=0.093 Sum_probs=193.5
Q ss_pred HHHHHHHc--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007881 81 AYISNAVL--GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK 158 (586)
Q Consensus 81 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 158 (586)
.+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-..+.++.+..-.++..++-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34445443 588888888888876665443 334555666677778888888888887776445666677777777777
Q ss_pred cCChHHHHHHHhcC---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007881 159 CNEVGLAKVVFDGI---IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 159 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
.|+++.|..-.++. ..+++........+|.+.|++.+...++.+|.+.|+--|+..- ++
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l- 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL- 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-
Confidence 88887777666554 3456667777778888888888888888888777754432210 00
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007881 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+ .+..
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk--~~~D 295 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK--RQWD 295 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH--hccC
Confidence 122344444444444444444455665552 4455566667777778888888888777777 4544
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007881 313 PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLN 391 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 391 (586)
|+ ...+-.+.+.++.+.-++..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..
T Consensus 296 ~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~ 369 (400)
T COG3071 296 PR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELAD 369 (400)
T ss_pred hh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 44 2222345566777666666666655544444 56777777788888888888887765 66777788888888
Q ss_pred HHHHcCCHHHHHHHHHHHhcc
Q 007881 392 ACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~ 412 (586)
++.+.|++++|.+..++.+.+
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 888888888777777776643
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.1e-08 Score=92.32 Aligned_cols=365 Identities=13% Similarity=0.024 Sum_probs=245.3
Q ss_pred hhHHHHHHHHhcCCchHHHHHhccCCCC-CcccHHHHHHHHHcCC-ChhHH--------------HHHHHHHHHCC----
Q 007881 47 VGCSAFDMYSKTGLKDDADKMFDEMPER-NLATWNAYISNAVLGG-RPKNA--------------IDAFINLRRTG---- 106 (586)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A--------------~~~~~~m~~~g---- 106 (586)
.-...+..|...++-+.|...+.+.+.. ...--|.|+.-+-+.| +-.++ +..+.-..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcch
Confidence 3345667777788888999888888763 3333344443333332 22222 12222122211
Q ss_pred -----------CCCChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007881 107 -----------GEPDLITFCAFLNACSD--CSLLQLGRQLHGFLVRSG-FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 107 -----------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
+.|+..+...-+.+++. .++-..+.+.+-.+.... ++.|+....++...|...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 23444444444444433 344455555555444443 5677888999999999999999999999987
Q ss_pred CCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhH
Q 007881 173 IDKNDVSWCSM---LVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFV 249 (586)
Q Consensus 173 ~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (586)
..-|+.+...| .-.+.+.|+.++...+...+.... .-....|..-+......++++.|..+-+..++.... ++..
T Consensus 259 ~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~a 336 (564)
T KOG1174|consen 259 LCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEA 336 (564)
T ss_pred hhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchH
Confidence 65555444333 344567888888888777776532 112222322333344567788888877777766543 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH-HHh
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL-SAC 325 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll-~a~ 325 (586)
+-.-...+...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~---~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL---FQNSARSLTLFGTLVL 413 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH---hhcchhhhhhhcceee
Confidence 44445667788999999999987653 47889999999999999999999887776551 233555555442 233
Q ss_pred h-ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 007881 326 S-RAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 326 ~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a 402 (586)
. ....-++|..+++... .+.|+ ....+.+...+...|+.++++.++++. ...||....+.|...+...+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 2334578888888765 56787 456677888899999999999999987 6678999999999999999999999
Q ss_pred HHHHHHHhccCCCCchh
Q 007881 403 RIAADNLFKLDPNDSGN 419 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~ 419 (586)
...|..+++++|++..+
T Consensus 491 m~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhcCccchHH
Confidence 99999999999987543
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=8.1e-12 Score=84.46 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=43.6
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
||+++||++|.+|++.|++++|.++|++|.+ .|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~--~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK--RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHcC
Confidence 6888888889998888889999999999888 8888888888888888874
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4.5e-09 Score=95.64 Aligned_cols=295 Identities=11% Similarity=0.082 Sum_probs=193.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh-------HHHHHHHHHHcCChHHHH
Q 007881 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS-------WCSMLVVYVQNYEEENGC 197 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~ 197 (586)
++.++|...|-+|.+.. +.+..+.-+|.+.|-+.|.++.|.++-+.+.+....| .-.|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56777888888777653 3345566677788888888888888877665432222 234556677777777777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007881 198 QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN 277 (586)
Q Consensus 198 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 277 (586)
.+|..+.+.+. --......++..|-...+|++|..+-..+.+.+.++... -+...|
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAqfy-------------------- 183 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQFY-------------------- 183 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHHHH--------------------
Confidence 77777765431 122334445555555556666665555555554332211 112222
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV-TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYAC 356 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 356 (586)
.-+...+....+.+.|..++.+..+ .+ |+.+ .-..+.......|+++.|.+.++.+.+. +..--..+...
T Consensus 184 ----CELAq~~~~~~~~d~A~~~l~kAlq--a~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~ 254 (389)
T COG2956 184 ----CELAQQALASSDVDRARELLKKALQ--AD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEM 254 (389)
T ss_pred ----HHHHHHHhhhhhHHHHHHHHHHHHh--hC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence 2234444556788899999999887 33 5543 3335567788999999999999999765 33333677889
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh--hcCCh
Q 007881 357 VVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA--ATGRW 433 (586)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~ 433 (586)
|..+|...|+.++...++.++ ...+....-..+..--....-.+.|.....+-+...|.--..|..+-.-.. .-|++
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 999999999999999999887 444555555555555455556677888777777778875444444433333 45679
Q ss_pred HHHHHHHHHHHhCCCccCCc
Q 007881 434 EEADLVRKEMKDVGIKKGAG 453 (586)
Q Consensus 434 ~~a~~~~~~m~~~g~~~~~~ 453 (586)
.+...+++.|....++..|.
T Consensus 335 k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCC
Confidence 99999999998877765553
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.7e-08 Score=95.55 Aligned_cols=371 Identities=11% Similarity=-0.032 Sum_probs=240.7
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCC-hhhhHHHHHHHHhcCCchHHHHHhccCCCCCcc---cHHHHHHHHHcCCChhH
Q 007881 19 ASSALHIPVTGKQLHALALKSGQIHD-VFVGCSAFDMYSKTGLKDDADKMFDEMPERNLA---TWNAYISNAVLGGRPKN 94 (586)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 94 (586)
-|-+.|.+++|...+.+.+.. .|| +.-|...-..|...|+|++..+--....+-++. ++..-.+++-..|++.+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 356778899999999998875 566 777888888898999988887766655543332 33333345555566666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH--------HHHH-hC--CCCChhHHHHHHHHHHh-----
Q 007881 95 AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHG--------FLVR-SG--FDGNVSVCNGLVDFYGK----- 158 (586)
Q Consensus 95 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~-~g--~~~~~~~~~~ll~~~~~----- 158 (586)
|+.=.. ..+++..+....-.-.+.+++. +-.+ .+ +-|.....++....+..
T Consensus 202 al~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 202 ALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 543222 2222222222211111122211 1111 11 11221111111111110
Q ss_pred ----c-------------------CChHHHHHHHhcC-------CCCC---h------hhHHHHHHHHHHcCChHHHHHH
Q 007881 159 ----C-------------------NEVGLAKVVFDGI-------IDKN---D------VSWCSMLVVYVQNYEEENGCQM 199 (586)
Q Consensus 159 ----~-------------------g~~~~A~~~~~~~-------~~~~---~------~~~~~li~~~~~~g~~~~A~~~ 199 (586)
. ..+..|...+.+- ...+ . .+...-..-+.-.|+.-.|...
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 0122222222111 0111 1 1111112234557888999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C
Q 007881 200 FLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---R 276 (586)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~ 276 (586)
|+........++. .|.-+...|....+.++..+.|....+.++. |..+|.--..++.-.+++++|..=|++... .
T Consensus 349 ~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 9998886543333 2777777889999999999999999998876 777888888888899999999999999876 3
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC------
Q 007881 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG------ 350 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------ 350 (586)
++..|-.+-.+..+.+++++++..|++.++ .++--+..|+.....+...+++++|.+.|+..+. +.|+
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk---kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v 500 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKK---KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIV 500 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccc
Confidence 556676677777788999999999999987 2444478899999999999999999999998863 3444
Q ss_pred ---hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007881 351 ---AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 351 ---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
+.+.-.++..- -.+++.+|.+++++. .+.| ....|.+|...-.+.|+.++|+++|++...+.
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22222333222 448999999999998 5555 45789999999999999999999999987754
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=5.1e-09 Score=105.27 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=171.5
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--
Q 007881 213 FMISSVLSACARIAGLELGRSVHAVAVKA-----CV-EGNIF-VGSALVDMYGKCGSIQDAEIAFNKMPE-------R-- 276 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-------~-- 276 (586)
.+...+...|...|+++.|..++...++. |. .|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566778888888888888888877664 21 12222 234467788889999999888887752 2
Q ss_pred --CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc---CCCC-CCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcC--C
Q 007881 277 --NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR---CEAV-PNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYG--I 347 (586)
Q Consensus 277 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~g~~-pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 347 (586)
-..+++.|...|.+.|++++|...+++..+.- .+.. |+. ..++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22467777788999999988888777665410 1222 222 3466777788999999999999987765543 2
Q ss_pred CCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-------CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-
Q 007881 348 KPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-------PM--RP-TISVWGALLNACRVYGKPELGRIAADNLFKL- 412 (586)
Q Consensus 348 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 412 (586)
.++ ..+++.|...|...|++++|.++++++ .. .+ ....++.|...|.+.+++++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 232 467899999999999999999999987 11 12 2456778888899999999999998887653
Q ss_pred ---CC---CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 413 ---DP---NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 413 ---~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+| +-..+|..|+..|...|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34 4456788999999999999999999988763
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=4.9e-08 Score=91.80 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=191.8
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007881 159 CNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
.|++..|+++..+-.+ .....|..-+.+--+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655322 2233444444555666777777777776665422334444455555666777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----------eeHHHHHHHHHHhcCCHHHHHHHHHHh
Q 007881 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN-----------LVCWNAIIGGYAHQGHADMALSSFEEM 304 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 304 (586)
.++.+.++. ++.+.......|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 777776655 56677777788888888888888887776522 236777777666666666655666665
Q ss_pred hhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 007881 305 TSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMR 380 (586)
Q Consensus 305 ~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 380 (586)
.. ..+-++..-.+++.-+...|+.++|.++..+..++ +..|+.. .+ -...+-++...-++..++. |..
T Consensus 256 pr---~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 256 PR---KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred cH---HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 54 34556666778888899999999999999988776 6666511 11 1233455555544444443 444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 381 PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
| ..+.+|..-|.+++.+.+|...++.+++..|. ...|..++.++.+.|+.++|.+++++....
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4 78899999999999999999999999998886 678999999999999999999999987643
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=3.1e-09 Score=111.86 Aligned_cols=257 Identities=11% Similarity=0.015 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHh---------cccCcHHHHHHHHHHHH
Q 007881 176 NDVSWCSMLVVYVQ-----NYEEENGCQMFLTARREGVEPKD-FMISSVLSACA---------RIAGLELGRSVHAVAVK 240 (586)
Q Consensus 176 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 240 (586)
+...|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555566655322 23467899999998874 4554 34444444333 22447899999999998
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-H
Q 007881 241 ACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-V 316 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-~ 316 (586)
..+. +...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+. .
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~----l~P~~~~ 407 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK----LDPTRAA 407 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCChh
Confidence 8765 678888888999999999999999999764 4 356788888899999999999999999988 34553 2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISV-WGALLNAC 393 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~ 393 (586)
.+..++..+...|++++|...++++.+. ..|+ ...+..+...|...|++++|...++++ +..|+... ++.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3334455566789999999999988653 2353 555777888899999999999999987 44555444 44455556
Q ss_pred HHcCCHHHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 394 RVYGKPELGRIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...| +.|...++.+.+.. |.++.. +...|.-.|+-+.+... +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 47777777776643 443333 56667778888877777 7777654
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=7.9e-09 Score=96.32 Aligned_cols=161 Identities=11% Similarity=-0.013 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007881 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+....+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3456666777777777777777777766542 223444455555556666666666666666555433 33444445555
Q ss_pred HHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCH
Q 007881 257 YGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~ 331 (586)
|...|++++|.+.|++..+ .....+..+...+...|++++|...|.+... .. +.+...+..+...+...|++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--ID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-cCChHHHHHHHHHHHHcCCH
Confidence 5555555555555555432 1122333344444444555555555544444 11 11223344444444444444
Q ss_pred HHHHHHHHHhH
Q 007881 332 EKGMKIFYSMT 342 (586)
Q Consensus 332 ~~a~~~~~~~~ 342 (586)
++|...+++..
T Consensus 186 ~~A~~~~~~~~ 196 (234)
T TIGR02521 186 KDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.6e-08 Score=95.75 Aligned_cols=279 Identities=10% Similarity=-0.026 Sum_probs=216.5
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007881 142 FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV---SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSV 218 (586)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 218 (586)
...+..+...-.+-+...+++.+..++++...+.|+. .+..-|.++...|+..+-..+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456667777778888899999999999998776554 4555678889999998888888888875 34567789998
Q ss_pred HHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCCHH
Q 007881 219 LSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 295 (586)
.--|...|+.++|++.+......+.. -...|-.+...|+-.|.-+.|...+....+ | ....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 88888889999999999988776544 345677888899999999998877765443 1 1111222344578889999
Q ss_pred HHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc-CC---C-CChHHHHHHHHHHHhcCChHH
Q 007881 296 MALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY-GI---K-PGAEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~ 369 (586)
-|.+.|.+... +-| |+..++-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++
T Consensus 398 LAe~Ff~~A~a----i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 398 LAEKFFKQALA----IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHh----cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999876 455 56777777777777899999999998876211 11 1 135578899999999999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007881 370 AYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 370 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
|+..+++. ... -|..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|..+
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999987 333 4788899999999999999999999999999999997766666543
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=1.9e-07 Score=94.73 Aligned_cols=399 Identities=12% Similarity=0.055 Sum_probs=258.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhh-HH
Q 007881 40 GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLIT-FC 115 (586)
Q Consensus 40 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 115 (586)
.+..|+.+|..|.-+..++|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+.+.-......|+..+ +-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567899999999999999999999999998754 3455799999999999999999999988765433354443 33
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhcC-----------ChHHHHHHHhcCCCC---C
Q 007881 116 AFLNACS-DCSLLQLGRQLHGFLVRS--GF--DGNVSVCNGLVDFYGKCN-----------EVGLAKVVFDGIIDK---N 176 (586)
Q Consensus 116 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~---~ 176 (586)
..-+.|. +.+..+++...-.+++.. +. ......|-.+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333444 446777777777766662 11 112334444544554321 234556666665433 2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007881 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
+.+---+.--|+..++.+.|++..++....+-.-+...|..+.-.++..+++..|..+.+.....-.. |......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhh
Confidence 22222233457778899999999999988765677778888888888889999999888766543211 00000000111
Q ss_pred HHhcCCHHHHH--------------------------HHHhhCCC-----CCe-eHHHHHHHHHHhcCCHHHHHHHHHHh
Q 007881 257 YGKCGSIQDAE--------------------------IAFNKMPE-----RNL-VCWNAIIGGYAHQGHADMALSSFEEM 304 (586)
Q Consensus 257 ~~~~g~~~~A~--------------------------~~~~~m~~-----~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 304 (586)
-...++.++|. +.+..+.- .+. .++..+ .+... -+.+.+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-c
Confidence 11123333332 22222210 111 222222 22221 11111110000 2
Q ss_pred hhccCCCCC--CH------HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007881 305 TSMRCEAVP--NY------VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 305 ~~~~~g~~p--d~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
.. ..+.| +. ..+......+.+.+..++|...+.+..+ ...-....|......+...|.+++|.+.|..
T Consensus 634 p~--s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 634 PS--STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred Cc--ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 22 22223 31 2234455677888999999988887753 2233466777777888999999999999988
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 377 M-PMRPT-ISVWGALLNACRVYGKPELGRI--AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 377 m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
. .+.|+ +.+..++...+.+.|+...|.. ++..+.+.+|.++..|..++.++.+.|+.++|.+.|......
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7 66665 5678889999999998888887 999999999999999999999999999999999999988764
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=4.2e-08 Score=98.74 Aligned_cols=236 Identities=9% Similarity=0.102 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC----------CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCC
Q 007881 148 VCNGLVDFYGKCNEVGLAKVVFDGIID----------KNDV-SWCSMLVVYVQNYEEENGCQMFLTARRE-----G-VEP 210 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p 210 (586)
+...|..+|...|+++.|..+++...+ +.+. ..+.+...|...+++++|..+|+++..- | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 333455555555555555555543321 1221 1234566777888888888888877542 1 111
Q ss_pred C-HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCee-HHHHHH
Q 007881 211 K-DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLV-CWNAII 285 (586)
Q Consensus 211 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~-~~~~li 285 (586)
. ..+++.|..+|.+.|++++|...++.+.+. ++... .+.+. .++.++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHHH
Confidence 1 123333444455555555554444433321 11100 01111 233344
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccC-CCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc----C-CCCC-hHHH
Q 007881 286 GGYAHQGHADMALSSFEEMTSMRC-EAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY----G-IKPG-AEHY 354 (586)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~-g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~ 354 (586)
..++..+++++|..++++..+.-. -+.++ ..+++.|...|.+.|++++|.++|++++... + ..+. ...+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 555666666666666665443100 01122 3567788888888888888888888776543 1 1222 4566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 355 ACVVDLLGRAGLVDRAYEIIKEM--------PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+.|...|.+.+++.+|.++|.+. +..|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77778888888888888888775 23344 36788999999999999999999888774
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=9.2e-09 Score=99.18 Aligned_cols=211 Identities=14% Similarity=0.030 Sum_probs=147.7
Q ss_pred cCcHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHH
Q 007881 226 AGLELGRSVHAVAVKAC-VEG--NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 122 245677778889999999999999988764 456789999999999999999999
Q ss_pred HHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 007881 300 SFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM- 377 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 377 (586)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++.
T Consensus 120 ~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLE----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999987 3465 577788888888999999999999988753 555432222223345567899999999664
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 378 -PMRPTISVWGALLNACRVYGKPELGRIAADNLF-------KLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 378 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...|+...| .......|+..++ ..++.+. ++.|....+|..++..|...|++++|...|++..+..
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223333222 2222334555443 2444443 3445666789999999999999999999999988644
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.6e-06 Score=84.19 Aligned_cols=403 Identities=12% Similarity=0.045 Sum_probs=221.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHH--HHHHHH--cCCCh
Q 007881 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNA--YISNAV--LGGRP 92 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g~~ 92 (586)
+.-....+++++|.+....++..+ +.|...+..-+-+..+.+.+++|+++.+.-..- .+++. +=.+|| +.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 344566778999999999998876 556666666677778889999999777654321 12222 234444 56788
Q ss_pred hHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHh
Q 007881 93 KNAIDAFINLRRTGGEPDL-ITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDG-NVSVCNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 93 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
++|+..++ |..++. .+...-...|.+.++++++..+|+.+.+++.+. +...-..++.+-.. -.+. +.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ 165 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence 88888877 333333 255555556778888888888888887765321 11111111111000 0000 122
Q ss_pred cCCCCChhhHHH---HHHHHHHcCChHHHHHHHHHHHHCC-------CCCCH------h-HHHHHHHHHhcccCcHHHHH
Q 007881 171 GIIDKNDVSWCS---MLVVYVQNYEEENGCQMFLTARREG-------VEPKD------F-MISSVLSACARIAGLELGRS 233 (586)
Q Consensus 171 ~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~------~-t~~~ll~~~~~~~~~~~a~~ 233 (586)
..+.....+|.. ....++..|++.+|+++++...+.+ -.-+. . .-.-+.-++-..|+-++|.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 222211212221 1223344455555555554441110 00000 0 00112222334455555555
Q ss_pred HHHHHHHhCCCC--------------------------------------------------chhHHHHHHHHHHhcCCH
Q 007881 234 VHAVAVKACVEG--------------------------------------------------NIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 234 ~~~~~~~~~~~~--------------------------------------------------~~~~~~~li~~~~~~g~~ 263 (586)
++...++..+.. ....-+.++.+|. +..
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~ 323 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKM 323 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhH
Confidence 554444433221 1111222333332 334
Q ss_pred HHHHHHHhhCCCC-CeeHHHHHHHHHH--hcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCHHHHHHHH
Q 007881 264 QDAEIAFNKMPER-NLVCWNAIIGGYA--HQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 264 ~~A~~~~~~m~~~-~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~ 338 (586)
+.++++-...+.. ....+.+++.... +.....+|.+++...-+ . .|+. +.....+......|+++.|.+++
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--G--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--c--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4455555554431 1233444444332 22346777787777765 2 2443 34445566678899999999999
Q ss_pred H--------HhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007881 339 Y--------SMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--------PMRPT-ISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 339 ~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~ 401 (586)
. .+.+ .+-. +.+...++.++.+.++-+-|..++.+. +-++. ..+|.-+..--.++|+-++
T Consensus 400 ~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 4432 2333 445667788888888877776666654 22222 1233333344456799999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
|..+++++.+.+|++..+...+..+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999999999999875 45666655443
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.11 E-value=3.7e-06 Score=83.84 Aligned_cols=429 Identities=12% Similarity=0.086 Sum_probs=261.7
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHh-CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007881 12 TFPCLFKASSALHIPVTGKQLHALALKS-GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
.|-..++.+...+++..-+..|+..++. .+.-...+|.-.+......|-++.+.++++....-++..-+--|.-+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3444555666778888888888887764 223334578888888888888888988888877666666777888888899
Q ss_pred ChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhcC
Q 007881 91 RPKNAIDAFINLRRTG------GEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGF--DGN--VSVCNGLVDFYGKCN 160 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~ll~~~~~~g 160 (586)
++++|.+.+....... .+.+...|..+-...++..+.-....+ +.+++.|+ -+| -..|++|.+-|.+.|
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 9999988888775422 233444566555555555443332222 22233332 233 357999999999999
Q ss_pred ChHHHHHHHhcCCCC--ChhhHHHHHHHHHHc----------------CC------hHHHHHHHHHHHHCCC--------
Q 007881 161 EVGLAKVVFDGIIDK--NDVSWCSMLVVYVQN----------------YE------EENGCQMFLTARREGV-------- 208 (586)
Q Consensus 161 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-------- 208 (586)
+++.|..+|++.... .+.-++.+-.+|++- |+ ++-.+.-|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999876442 222333333333321 11 1222333444333210
Q ss_pred ---CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh-C----CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe--
Q 007881 209 ---EPKDFMISSVLSACARIAGLELGRSVHAVAVKA-C----VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNL-- 278 (586)
Q Consensus 209 ---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 278 (586)
+-+..+|..-.. ...|+..+-...+.++++. + +..-...+..+.+.|-..|+++.|+.+|++..+.+-
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 011122222111 1234556666677776653 1 111235678889999999999999999999876332
Q ss_pred -----eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC---------CCCCHHH------HHHHHHHhhccCCHHHHHHHH
Q 007881 279 -----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCE---------AVPNYVT------LVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 279 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g---------~~pd~~t------~~~ll~a~~~~g~~~~a~~~~ 338 (586)
.+|..-...-.++.+++.|+++.++......+ .++-... |...+..--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34555555566788999999998887652111 0111112 223333334456777777888
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C-CC-CC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHhc
Q 007881 339 YSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P-MR-PT-ISVWGALLNACRV---YGKPELGRIAADNLFK 411 (586)
Q Consensus 339 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~-p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~ 411 (586)
+.+..-.-..|... ....-.+-...-++++.+.+++- + ++ |+ ...|++.+.-+.+ ...++.|..+|+++++
T Consensus 501 driidLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 501 DRIIDLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 87765322233322 12222344556788999999886 2 22 44 3578888877654 2368999999999999
Q ss_pred cCCCCch--hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 412 LDPNDSG--NHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 412 ~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..|+... .|...+..-.+-|....|..++++...
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8875332 333334444456888888888888643
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.6e-09 Score=95.55 Aligned_cols=227 Identities=13% Similarity=0.069 Sum_probs=132.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007881 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC 260 (586)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (586)
+.|..+|.+.|.+.+|.+.|+.-..+ .|-..||..+-.+|.+..+.+.|..++.+-++.-+. |+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 44566666666666666666665553 344445555555555555555555555554443221 333333334444444
Q ss_pred CCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007881 261 GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 261 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
++.+ +|.++|+...+. . ..+.....++...|.-.++++-|+.+++.
T Consensus 304 ~~~~-------------------------------~a~~lYk~vlk~--~-~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 304 EQQE-------------------------------DALQLYKLVLKL--H-PINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred HhHH-------------------------------HHHHHHHHHHhc--C-CccceeeeeeeeccccCCChHHHHHHHHH
Confidence 4444 444444444441 1 11233333444444444445555555544
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 341 MTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM---PMRP--TISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 341 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+..- |+. +.+.|+.+.-.|.-.+++|-++.-|++. ...| -..+|..|.......|++..|.+.|+.++..+|+
T Consensus 350 iLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 4432 322 3334444444444444555444444443 1112 2346777777777789999999999999999999
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 416 DSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+..+++.|+-.-.+.|++++|+.+++...+.
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999999999999988764
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=1.2e-08 Score=107.57 Aligned_cols=225 Identities=14% Similarity=-0.009 Sum_probs=169.9
Q ss_pred CHhHHHHHHHHHhc-----ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC-
Q 007881 211 KDFMISSVLSACAR-----IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG---------KCGSIQDAEIAFNKMPE- 275 (586)
Q Consensus 211 ~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~- 275 (586)
+...|...+.+-.. .+++++|...+++.++..+. +...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 33445555554321 24568999999999987655 4556666665554 23458899999998765
Q ss_pred --CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-
Q 007881 276 --RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA- 351 (586)
Q Consensus 276 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~- 351 (586)
.+..+|..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...++...+ +.|+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~ 406 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRA 406 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCh
Confidence 3567788888888999999999999999988 3365 56788888899999999999999999974 45653
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM--PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
..+..+...+...|++++|...+++. ...|+ ...+..+..++...|+.++|...++++....|.+......+...|.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 23334455577789999999999887 22354 4456677777889999999999999998888887778888888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 007881 429 ATGRWEEADLVRKEMKD 445 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~ 445 (586)
..| ++|...++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 487 QNS--ERALPTIREFLE 501 (553)
T ss_pred ccH--HHHHHHHHHHHH
Confidence 888 588887777765
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=3e-06 Score=84.63 Aligned_cols=423 Identities=13% Similarity=0.047 Sum_probs=263.7
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcC
Q 007881 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLG 89 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 89 (586)
|-.+++.| ..+++..+....+.+++ +.+....+.....-.+...|+-++|......-.. ++.+.|..+.-.+...
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44455544 45778888888888877 3333444444444445567899999988876654 4667899888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007881 90 GRPKNAIDAFINLRRTGGEPD-LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.++++|++.|+..... .|| ...+.-+--.-++.++++.....-.+..+.. +.....|..+..++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874 444 4455544444556788887777776666653 44566788888888889999999888
Q ss_pred HhcCCC-----CChhhHHH------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhcccCcHHHHHHHH
Q 007881 169 FDGIID-----KNDVSWCS------MLVVYVQNYEEENGCQMFLTARREGVEPKDFMI-SSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 169 ~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~ 236 (586)
.++... ++...+.- .......+|..++|++.+..-... ..|...+ ..-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 776522 33333322 234567788888888887655432 1233332 233455678899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhCCC--CCeeHHHHHHHHHHhcCC-HHHHHHHHHHhhhccCCCC
Q 007881 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAE-IAFNKMPE--RNLVCWNAIIGGYAHQGH-ADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~g~~ 312 (586)
.++...+. +...|--+..++++--+.-++. .+|....+ |-...-..+--......+ .+..-.++..+.+ .|++
T Consensus 244 ~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~--Kg~p 320 (700)
T KOG1156|consen 244 RLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS--KGVP 320 (700)
T ss_pred HHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh--cCCC
Confidence 99887754 5555666666665443333443 66665543 111000000011111122 2333445566666 5655
Q ss_pred CCHHHHHHHHHHhhccCCHH----HHHHHHHHhHHhc-------C--CCCChH--HHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 313 PNYVTLVCVLSACSRAGAVE----KGMKIFYSMTLKY-------G--IKPGAE--HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 313 pd~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~~-------~--~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
|-...+ .+-|-.....+ -+..+...+.... + -+|+.. ++-.++..+-+.|+++.|+.+++..
T Consensus 321 ~vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 SVFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred chhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 433322 22222211111 1111222111100 0 145544 4457788899999999999999987
Q ss_pred -CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 378 -PMRPTIS-VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 378 -~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
.-.|+.+ .|..-...+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5456543 3444456688889999999999999999876655444455556688999999999998887764
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=1.5e-07 Score=90.75 Aligned_cols=218 Identities=10% Similarity=-0.057 Sum_probs=143.5
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007881 191 YEEENGCQMFLTARREG-VEPK--DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+.+.++..+. +...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666432 2222 234555556677778888888888888777654 6778888888888999999999
Q ss_pred HHHhhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007881 268 IAFNKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 268 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
..|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~----~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ----DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 88888754 3 456777788888888999999999998887 235543222222234456788999999976543
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHH--HHHHHhC-CCC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 345 YGIKPGAEHYACVVDLLGRAGLVDRA--YEIIKEM-PMR----P-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~~----p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
...|+...+ .++.. ..|+..++ .+.+.+. ... | ....|..+...+...|++++|+..|+++.+.+|++
T Consensus 194 -~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 233433222 23332 34544333 3223221 111 1 23578889999999999999999999999999754
Q ss_pred ch
Q 007881 417 SG 418 (586)
Q Consensus 417 ~~ 418 (586)
..
T Consensus 270 ~~ 271 (296)
T PRK11189 270 FV 271 (296)
T ss_pred HH
Confidence 33
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=3.9e-05 Score=76.76 Aligned_cols=264 Identities=12% Similarity=0.137 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhcccCcHHHHHHHHHHHHhC-----------CC
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPK---DFMISSVLSACARIAGLELGRSVHAVAVKAC-----------VE 244 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~ 244 (586)
.|-.+...|-.+|+.+.|..+|.+..+-..+-- ..+|..-...=.+..+++.|..+.+.+.... .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 355556666666666666666665544321110 0111111111123344555555554443210 00
Q ss_pred C------chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHH---HHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007881 245 G------NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIG---GYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 245 ~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
+ +..+|+..++.--..|-++....+++++.+--+.|-..+++ -+-.+.-++++.+++++-+. .---|+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~--LFk~p~v 546 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS--LFKWPNV 546 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc--cCCCccH
Confidence 1 12334444444455566666666666665422222222221 12345567888888887765 2223443
Q ss_pred -HHHHHHHHHhh---ccCCHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--HHH
Q 007881 316 -VTLVCVLSACS---RAGAVEKGMKIFYSMTLKYGIKPGAE--HYACVVDLLGRAGLVDRAYEIIKEMP--MRPT--ISV 385 (586)
Q Consensus 316 -~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~ 385 (586)
..|++.+.-+. ....++.|+.+|++..+ +.+|... .|-.....=-+-|....|+.++++.. +++. ...
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34555554443 34578999999999975 6666522 22233333345688889999999983 3332 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh--HHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 386 WGALLNACRVYGKPELGRIAADNLFKLDPNDSGN--HVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
|+..|.--...=-+.....+++++++.-|++..- ..-.+.+-.+.|..+.|+.++..-.+-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 7877766544444556678899999887765433 234566778899999999998876553
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=6e-06 Score=84.45 Aligned_cols=412 Identities=14% Similarity=0.119 Sum_probs=255.6
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccH-HHHHHHHHc-----C
Q 007881 18 KASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATW-NAYISNAVL-----G 89 (586)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~-----~ 89 (586)
..+...|+++.|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.. |+-..| ..+..+..- .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4567789999999998765443 344456677888999999999999999999876 433333 444444422 2
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007881 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL-QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 168 (586)
.+.+...++|+++...- |.......+.-.+.....+ ..+...+..+++.|+| .+++.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 35677788899887643 4444443333233332222 2355566667777755 3566677777755555555555
Q ss_pred HhcCC------------------CCChhhH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcccC
Q 007881 169 FDGII------------------DKNDVSW--CSMLVVYVQNYEEENGCQMFLTARREGVEPK-DFMISSVLSACARIAG 227 (586)
Q Consensus 169 ~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 227 (586)
+.... .|....| .-+...|-..|++++|++++++..+. .|+ ...|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 54321 1233334 55677888999999999999999885 465 5577788889999999
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee----------HH--HHHHHHHHhcCCHH
Q 007881 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLV----------CW--NAIIGGYAHQGHAD 295 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~--~~li~~~~~~g~~~ 295 (586)
+.+|....+........ |..+-+-.+..+.++|++++|.+++....+++.. .| .-...+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999998876 8889999999999999999999999888765421 23 22456788999999
Q ss_pred HHHHHHHHhhhccCCCC---CC----------HHHHHHHHHHhhccC-------CHHHHHHHHHHhHHhcCCCC------
Q 007881 296 MALSSFEEMTSMRCEAV---PN----------YVTLVCVLSACSRAG-------AVEKGMKIFYSMTLKYGIKP------ 349 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~---pd----------~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p------ 349 (586)
.|++.|....+.=..+. -| ..+|..++...-+.. -...|.+++-.+........
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~ 402 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEA 402 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 99887776654111111 22 223333333221111 12334444444432210000
Q ss_pred -----ChHHHHHHHHHH---HhcCChHHHHHHHH-----------hC----C--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007881 350 -----GAEHYACVVDLL---GRAGLVDRAYEIIK-----------EM----P--MRPTISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 350 -----~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m----~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
+..--..+-.-. .+...-+++...-. +. + ..||+.- ..|+ ....-.++|..
T Consensus 403 ~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~k 478 (517)
T PF12569_consen 403 DNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMK 478 (517)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHH
Confidence 000000110000 01111111111100 00 1 1122211 1122 12335688999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 405 AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 479 fl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 479 FLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999888877653
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.94 E-value=5.5e-07 Score=91.91 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=100.1
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc-------------CCCCChH--HHHHHHHHH
Q 007881 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY-------------GIKPGAE--HYACVVDLL 361 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~ 361 (586)
+...+..+.. .|+++ +|+.|-..|......+-..+++....... .-+|+.. ++.-+.+.|
T Consensus 130 ~~~yl~~~l~--KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 130 LDEYLRPQLR--KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHh--cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 3444555555 55433 44444444554444444444444433211 1134432 445667788
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 007881 362 GRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
-..|++++|++++++. ...|+ +..|..-...+...|++++|....+.+.++++.|-..-.-.+..+.++|+.++|.++
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899999999999876 55565 456777777788899999999999999999988887777788888899999999999
Q ss_pred HHHHHhCCC
Q 007881 440 RKEMKDVGI 448 (586)
Q Consensus 440 ~~~m~~~g~ 448 (586)
+......+.
T Consensus 285 ~~~Ftr~~~ 293 (517)
T PF12569_consen 285 ASLFTREDV 293 (517)
T ss_pred HHhhcCCCC
Confidence 988877665
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.9e-08 Score=89.64 Aligned_cols=222 Identities=12% Similarity=0.009 Sum_probs=125.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhcc
Q 007881 149 CNGLVDFYGKCNEVGLAKVVFDGII--DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMIS-SVLSACARI 225 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 225 (586)
-+-+..+|.+.|-+.+|.+.|+.-. .+-+.||-.|-..|.+-.+++.|+.+|.+-.+. .|-.+||. .+...+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3445556666666666666665542 234555555666666666666666666555542 34444443 233445555
Q ss_pred cCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHH
Q 007881 226 AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
++.+.+.++++...+.... ++....++...|.-.++.+-|...+.++.+ .+...|+.+.-+|.-.+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 6666666666666555432 444445555555556666666666665443 455556666656666666666666666
Q ss_pred HhhhccCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 303 EMTSMRCEAVPNY--VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 303 ~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+... .--.|+. ..|-.+.......|++..|.+.|+-.... -.-+.+.++.|.-.-.+.|++++|..+++..
T Consensus 383 RAls--tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALS--TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHh--hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 6555 2222332 33444555555666777776666665432 1223566666666666777777777776665
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=1.2e-07 Score=82.77 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=127.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVV 358 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 358 (586)
...+.-+|.+.|+...|..-+++.++ . .|+ ..++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG 110 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--H--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--h--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhh
Confidence 34456677888888888888888877 2 254 5677777778888888888888888776 34554 56777777
Q ss_pred HHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 007881 359 DLLGRAGLVDRAYEIIKEMPMRP----TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWE 434 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 434 (586)
.-+|..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++.+|+.+.....+.....+.|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 77888888888888888873333 24678888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 007881 435 EADLVRKEMKDVGI 448 (586)
Q Consensus 435 ~a~~~~~~m~~~g~ 448 (586)
+|..+++.....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998877654
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.8e-06 Score=79.92 Aligned_cols=414 Identities=10% Similarity=-0.016 Sum_probs=241.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHH-HHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCCh
Q 007881 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCS-AFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRP 92 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 92 (586)
+.-+...+++..|..+++.-...+-+.. ...+. +...|.+.|++++|...+..+.+ ++...|--|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 3344455677777777776553332111 12222 23445677888888888876543 4555566665555556777
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007881 93 KNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 93 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
.+|..+-.... -++..-..++...-+.++-++...+++.+... ..-.-+|.++..-.-.+.+|.+++.++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766654432 13334445555555677777777777665432 233445666655566788999999887
Q ss_pred CCC--ChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcHHHHH--------------H
Q 007881 173 IDK--NDVSWCS-MLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLELGRS--------------V 234 (586)
Q Consensus 173 ~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~--------------~ 234 (586)
... +-...|. |.-+|.+..-++-+.+++.--.++ -||. +..+.......+.=+-..|.+ .
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 553 3445554 445677777777777777766654 2433 233322222222111111111 1
Q ss_pred HHHHHHhCC------C------C-----chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCC----
Q 007881 235 HAVAVKACV------E------G-----NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGH---- 293 (586)
Q Consensus 235 ~~~~~~~~~------~------~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~---- 293 (586)
...+.++++ + | -+..--.|+-.|.+.+++++|..+.++....++.-|-.-.-.++..|+
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCc
Confidence 112222210 0 0 011222345568889999999999888765333333222222333332
Q ss_pred ---HHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH
Q 007881 294 ---ADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 294 ---~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 369 (586)
..-|.+.|+..-. .+..-|. .--.++.+++.-..++++.+-+++.+.. +-...|...+ .+.++++..|.+.+
T Consensus 336 reHlKiAqqffqlVG~--Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGE--SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHHHhcc--cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHH
Confidence 4455666655544 4433332 2334566677777889999999988853 3344444444 57899999999999
Q ss_pred HHHHHHhCC-CC-CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccC-CCCc-hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 370 AYEIIKEMP-MR-PTISVWGALLNA-CRVYGKPELGRIAADNLFKLD-PNDS-GNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 370 A~~~~~~m~-~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
|+++|-.+. .+ .|..+|.+++.- |...++++.|-.+ +++.+ |.+. .....+++-|.+++.+--|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999998872 11 467778776655 5667788776554 44444 3333 334467888999999999999999887
Q ss_pred hCCCcc
Q 007881 445 DVGIKK 450 (586)
Q Consensus 445 ~~g~~~ 450 (586)
..+..|
T Consensus 489 ~lDP~p 494 (557)
T KOG3785|consen 489 ILDPTP 494 (557)
T ss_pred ccCCCc
Confidence 755433
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.4e-05 Score=72.60 Aligned_cols=407 Identities=11% Similarity=0.049 Sum_probs=225.5
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCC-----
Q 007881 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGR----- 91 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~----- 91 (586)
..++.+.|++++|..++..+.... .++...+-.|.-.+.-.|.+.+|..+-...++ ++..-..|...-.+.++
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHH
Confidence 344568899999999999988754 56666666666666667889999988877654 11111222222233333
Q ss_pred -------------------------hhHHHHHHHHHHHCCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCC
Q 007881 92 -------------------------PKNAIDAFINLRRTGGEPDLITFCAFLN-ACSDCSLLQLGRQLHGFLVRSGFDGN 145 (586)
Q Consensus 92 -------------------------~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~ 145 (586)
+.+|+++|.+.... .|+-...|.-+. +|.+..-++-+.+++.-.++. ++.+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDS 218 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCc
Confidence 34444444444332 122222222221 233334444444444333332 1222
Q ss_pred hhHHHHHHHHHHhc--CChHHHHHHHhcCCCCChhhHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007881 146 VSVCNGLVDFYGKC--NEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY-----EEENGCQMFLTARREGVEPKDFMISSV 218 (586)
Q Consensus 146 ~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~l 218 (586)
....|.......+. |+..++ -..++.. |...--..+.-+++.+ .-+.|++++-.+.+ +.|. .-..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~--E~k~lad-N~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL 291 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAED--EKKELAD-NIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNL 291 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHH--HHHHHHh-cccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhh
Confidence 22233222222221 111111 1111100 0000001122222221 23455555444332 2232 22334
Q ss_pred HHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHH
Q 007881 219 LSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV-----DMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGY 288 (586)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~ 288 (586)
+--+.+.+++.+|..+...+.- ..|-..+...++ .-......+.-|.+.|+..-+ .++.--.+|.+.+
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 4456778888888777654321 112222222222 212222235667888876654 3445567788888
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHHhcCCh
Q 007881 289 AHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY-ACVVDLLGRAGLV 367 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~ 367 (586)
.-..++++.+-.+..... -- .-|...--.+..|.+..|.+.+|.++|-.+... .+ .|..+| +.|.+.|.+++.+
T Consensus 370 FL~~qFddVl~YlnSi~s--YF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES--YF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHH--Hh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCc
Confidence 888999999999988876 33 333333345778999999999999999887421 22 345555 4667899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 368 DRAYEIIKEMPMRPTISVWGALL-NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+-|.+++-++....+..+.-.+| .-|.+.+.+=-|-+.|+.+..++|.. ..| .|+-....-+|..+...
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANH 514 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcC
Confidence 99999999986544555544444 55999999999999999999999863 322 45555566677777665
Q ss_pred CCccCC
Q 007881 447 GIKKGA 452 (586)
Q Consensus 447 g~~~~~ 452 (586)
.-.|.|
T Consensus 515 ~~~~~p 520 (557)
T KOG3785|consen 515 KTDPIP 520 (557)
T ss_pred CCCCCc
Confidence 444444
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=1.2e-05 Score=82.14 Aligned_cols=402 Identities=13% Similarity=0.022 Sum_probs=255.6
Q ss_pred CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC----CCcccHHH
Q 007881 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE----RNLATWNA 81 (586)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 81 (586)
++-|...|-.+--++...|+++.+-+.|++.+..- -.....|+.+-..|..+|.-..|..+++.-.. |+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45678888888889999999999999999987653 34567888899999999999999999886543 33333333
Q ss_pred HHH-HHH-cCCChhHHHHHHHHHHHC--CCC--CChhhHHHHHHHHhcC----C-------ChHHHHHHHHHHHHhCCCC
Q 007881 82 YIS-NAV-LGGRPKNAIDAFINLRRT--GGE--PDLITFCAFLNACSDC----S-------LLQLGRQLHGFLVRSGFDG 144 (586)
Q Consensus 82 li~-~~~-~~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g~~~ 144 (586)
++. .|. +.+..+++++.-.+.... +.. .....|..+--+|... . ...++.+.++.+++.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 332 233 347778888777766551 111 1222333333333221 1 1345777888887776 22
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 007881 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGI----IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK-DFMISSVL 219 (586)
Q Consensus 145 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 219 (586)
|..+.-.+.--|+..++++.|.....+. ...+...|.-+.-.+...+++.+|+.+.+.....- |+ ......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhh
Confidence 3333333444577888999998887765 34578899999999999999999999988765431 11 00000000
Q ss_pred HHHhcccCcHHHHHHH-------H----------HHHH----hC-------CCCchhHHHHHHHHHHhcC---CHHHHHH
Q 007881 220 SACARIAGLELGRSVH-------A----------VAVK----AC-------VEGNIFVGSALVDMYGKCG---SIQDAEI 268 (586)
Q Consensus 220 ~~~~~~~~~~~a~~~~-------~----------~~~~----~~-------~~~~~~~~~~li~~~~~~g---~~~~A~~ 268 (586)
..-...++.+++.... + +... .| ....+.++..+.......+ ..+....
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 1111122222222211 1 1111 11 1111223322222211111 1111111
Q ss_pred HHhhCCCCCe------eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007881 269 AFNKMPERNL------VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 269 ~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
.+...+.|+. ..|......+.+.++.++|...+.+... +.| ....|......+...|..++|.+.|...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 2222222332 2455666778889999999988888766 334 3455666666778889999999999887
Q ss_pred HHhcCCCCC-hHHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 342 TLKYGIKPG-AEHYACVVDLLGRAGLVDRAYE--IIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 342 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
. .+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-+.|.-+.++++.+
T Consensus 711 l---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 711 L---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred H---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 5 56777 6788899999999998877777 88877 5555 67899999999999999999999999999998766
Q ss_pred ch
Q 007881 417 SG 418 (586)
Q Consensus 417 ~~ 418 (586)
|.
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 53
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.9e-06 Score=77.85 Aligned_cols=383 Identities=8% Similarity=-0.015 Sum_probs=189.1
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHhc
Q 007881 48 GCSAFDMYSKTGLKDDADKMFDEMPER---NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA-FLNACSD 123 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 123 (586)
+++.+..+.+..++++|++++..-.++ +....+.|..+|-+..++..|...|+++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 334444444555555555555444332 3334444555555555566666666555432 233222221 1222334
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHH--HHHHhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChHHHHHHH
Q 007881 124 CSLLQLGRQLHGFLVRSGFDGNVSVCNGLV--DFYGKCNEVGLAKVVFDGIID-KNDVSWCSMLVVYVQNYEEENGCQMF 200 (586)
Q Consensus 124 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (586)
.+.+..|..+...|... ++...-..-+ ......+++..+..+.++.+. .+..+.+.......+.|++++|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 44555555555444321 1111100011 112234555566666666552 34444444444455666666666666
Q ss_pred HHHHHC-CCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-------------c---------------hhHHH
Q 007881 201 LTARRE-GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG-------------N---------------IFVGS 251 (586)
Q Consensus 201 ~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~ 251 (586)
+...+- |..| ...|+..+ +..+.++.+.|.+...+++++|+.. | +..+|
T Consensus 168 qaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 665543 3333 33444333 3344556666666666666554321 1 11223
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007881 252 ALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
.-...+.+.|+++.|.+.+-.|+. .|++|...+.-.-. .+++.+..+-+.-+.. .. +-...||..++-.|+
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~--~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ--QN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh--cC-CCChHHHHHHHHHHh
Confidence 333346778999999999999984 46676655533222 3455555555555555 22 124678999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHh-cCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH-
Q 007881 327 RAGAVEKGMKIFYSMTLKYGI-KPGAEHYACVVDLLGR-AGLVDRAYEIIKEMPMRPTISVWGALLNA-CRVYGKPELG- 402 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~~ll~~-~~~~~~~~~a- 402 (586)
+..-++.|-.++.+-... .. -.+...|+ |++++.- .-..++|++-++.+.-.-....-...+.. -.++.+-+++
T Consensus 322 KNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999988887543211 00 11233343 3344333 34566666655544100000000111111 1122222222
Q ss_pred ---HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 403 ---RIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 403 ---~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..-+++.+++- ..+...-++.|.+..++..++++|+.-.+-
T Consensus 400 R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 400 RKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22233333322 123445567788889999999999876653
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=4.5e-06 Score=84.25 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=82.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007881 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
....+|.+|+.+++.++.+.. -..-|..+...|+..|+++.|.++|.+. ..++--|+||.+.|++++|.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 344455555555555544322 1223444445555555555555555322 12333455555555555555
Q ss_pred HHHhhCCCC--CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc
Q 007881 268 IAFNKMPER--NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY 345 (586)
Q Consensus 268 ~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 345 (586)
++-.+...| .++.|-+-..-+-++|++.+|.++|-.... |+. .|..|-+.|..+..+++...-..
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~------p~~-----aiqmydk~~~~ddmirlv~k~h~-- 878 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE------PDK-----AIQMYDKHGLDDDMIRLVEKHHG-- 878 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC------chH-----HHHHHHhhCcchHHHHHHHHhCh--
Confidence 555554432 223333333444455555555555543322 332 23344555555555544432211
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007881 346 GIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 346 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
..-..+...+..-|...|++..|.+.|-+.+ -|.+-++.|...+-+++|-
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~day 928 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAY 928 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHH
Confidence 1112233344444555555555555554442 2344444444444444443
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=6.5e-08 Score=95.10 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=174.4
Q ss_pred hcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHH
Q 007881 223 ARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
.+.|++.+|.-.|+..++..+. +...|--|.......++-..|+..+.+..+ .|..+.-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 5678899999999999988876 788888888888888888888888888775 455677777778888998899999
Q ss_pred HHHHhhhccCCC------C--CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007881 300 SFEEMTSMRCEA------V--PNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 300 ~~~~m~~~~~g~------~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 371 (586)
.++.-+. ... . ++..+-.. ..+.....+....++|-++....+.++|..++.+|.-.|--.|.+++|.
T Consensus 375 ~L~~Wi~--~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 375 MLDKWIR--NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHH--hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8887755 110 0 01000000 1223333455666777777666566688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 372 EIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 372 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+-|+.. .++| |...||-|...++...+.++|+..+.+++++.|.-..+.+.|+-.|...|.++||.+.|-....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999998 6777 5688999999999999999999999999999999999999999999999999999999887665
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=1.2e-06 Score=76.61 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=39.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007881 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
.+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+..++..+. +..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 34445555555555555555554432 112233444444444444444444444444444333 3334444444444444
Q ss_pred CHHHHHHHHhh
Q 007881 262 SIQDAEIAFNK 272 (586)
Q Consensus 262 ~~~~A~~~~~~ 272 (586)
++++|...|++
T Consensus 118 ~~~eA~q~F~~ 128 (250)
T COG3063 118 RPEEAMQQFER 128 (250)
T ss_pred ChHHHHHHHHH
Confidence 44444444444
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.8e-06 Score=83.17 Aligned_cols=216 Identities=14% Similarity=0.095 Sum_probs=140.8
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe---e-------HHHHHH
Q 007881 216 SSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNL---V-------CWNAII 285 (586)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~-------~~~~li 285 (586)
..+.++..+..+++.+.+-+....... .++.-++....+|...|.+......-+...+..- . +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345566666677777777777777765 3666667777778887777766655544332111 1 122233
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhc
Q 007881 286 GGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRA 364 (586)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~ 364 (586)
.+|.+.++++.|+..|.+... .-..||..+ +....+++........ -+.|... -...-...+.+.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLt--e~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALT--EHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhh--hhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhc
Confidence 456667788888888887766 333343322 2233344444333321 2334321 111224567788
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 365 GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 365 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
|++..|+..+.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998888887 3334 5677888888888889999999888999999988888888888888888888888888887
Q ss_pred HHhCC
Q 007881 443 MKDVG 447 (586)
Q Consensus 443 m~~~g 447 (586)
..+..
T Consensus 452 ale~d 456 (539)
T KOG0548|consen 452 ALELD 456 (539)
T ss_pred HHhcC
Confidence 76643
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=1.1e-05 Score=80.81 Aligned_cols=257 Identities=13% Similarity=-0.040 Sum_probs=137.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhc----ccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHH
Q 007881 185 VVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACAR----IAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYG 258 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 258 (586)
..+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.+.. .....| .......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 3445667777777777766654 2332 22221 111222 2333444443333 111122 2333444556677
Q ss_pred hcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCHHH
Q 007881 259 KCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 333 (586)
..|++++|.+.+++..+ .+...+..+...|...|++++|...+++....... .|+. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHCCCHHH
Confidence 77788888777777653 34456666777777778888888887777652111 1222 234456667777788888
Q ss_pred HHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007881 334 GMKIFYSMTLKYGIKPGAEHY-A--CVVDLLGRAGLVDRAYEI---IKE---M-PMRPTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
|..+++.........+..... + .++..+...|....+.+. ... . +.............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 888887764221111111111 1 223333334432222222 111 1 11111122224555567788888888
Q ss_pred HHHHHHhccCC---------CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 404 IAADNLFKLDP---------NDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 404 ~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..++.+....- .........+.++...|++++|.+.+......+
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88877765321 123445566777889999999999999887643
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.80 E-value=2.9e-05 Score=77.84 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=226.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007881 86 AVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 165 (586)
+...|+-++|....+.-....++ +.+.|..+.-.+....++++|.+.+..+...+ +.|...+.-|.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 45568889999988877665444 66677777766777789999999999999886 55677777666666677777766
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHH------HHhcccCcHHHHHHH
Q 007881 166 KVVFDGII---DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VEPKDFMISSVLS------ACARIAGLELGRSVH 235 (586)
Q Consensus 166 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~ 235 (586)
...-.... ......|...+.++.-.|+...|..++++..+.. -.|+...+.-... .....|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 55544442 2356789999999999999999999999987764 2466655544332 234566777776666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHH-HHHhcCCHHHHH-HHHHHhhhccCCC
Q 007881 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIG-GYAHQGHADMAL-SSFEEMTSMRCEA 311 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~g~ 311 (586)
......- ......-..-.+.+.+.+++++|..++..+.. ||...|.-... ++.+-.+.-+++ .+|....+ .
T Consensus 209 ~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~----~ 283 (700)
T KOG1156|consen 209 LDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE----K 283 (700)
T ss_pred HhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----c
Confidence 5443321 11333444567788899999999999999875 66666655444 343333333444 56665544 1
Q ss_pred CCCHHHHHHH-HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH----HHHHHHhC-C-------
Q 007881 312 VPNYVTLVCV-LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR----AYEIIKEM-P------- 378 (586)
Q Consensus 312 ~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------- 378 (586)
.|-...-..+ ++........+..-.++....++ |+++ ++..+...|-.-...+- +..+...+ +
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 2221111111 11112222233334444555443 6654 23333333322221111 12222222 1
Q ss_pred -----CCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 379 -----MRPTISVWGA--LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 379 -----~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
..|....|.. +...+-..|+++.|....+.++...|.-+..|..-+.++...|..++|...+++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 2466666665 455588899999999999999999999888999999999999999999999999987553
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.3e-05 Score=74.29 Aligned_cols=249 Identities=10% Similarity=0.052 Sum_probs=141.5
Q ss_pred HHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007881 188 VQNYEEENGCQMFLTARREG-VEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 266 (586)
+-.++...|...+-.+.... ++-|......+...+...|+.+++...|+.....++. ++.......-.+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 33455555555554444332 4445666677777777778888877777776654322 111111122234456666666
Q ss_pred HHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 267 EIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 267 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
..+-..+-. .....|-.-........+++.|+.+-++.++ +.|+ ...|..=..++...|++++|.-.|+...
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 555554432 2333444444445556677777777777666 2232 3344444455667777777777777764
Q ss_pred HhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHhccCCCCc
Q 007881 343 LKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALL-NACR-VYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 343 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+.| +...|..|+..|...|++.||.-.-+.. .+..+..+...+. ..|. ...--|.|..++++.+.++|.-.
T Consensus 362 ---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 362 ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred ---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 3443 4677777777777777777766544332 1112223332221 1111 11223567777777777777776
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+.+.++..+...|+.+++..++++-.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 777777777777777777777776654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=3.2e-07 Score=87.19 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh-HHHHHHHHH
Q 007881 366 LVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW-EEADLVRKE 442 (586)
Q Consensus 366 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 442 (586)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|..++.++.+.+|.++.+...++.+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 344555555554 22244455555555555555666666665665555566555555555555555555 445555555
Q ss_pred HHh
Q 007881 443 MKD 445 (586)
Q Consensus 443 m~~ 445 (586)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 543
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=5.3e-07 Score=85.75 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc-
Q 007881 249 VGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR- 327 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~- 327 (586)
+.-....+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+ . ..| .+...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~--~eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--I--DED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--C--SCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--c--CCc-HHHHHHHHHHHHH
Confidence 3333445667788888888888775 4556666678888899999999999999877 3 234 344445544432
Q ss_pred ---cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HH
Q 007881 328 ---AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKP-EL 401 (586)
Q Consensus 328 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~-~~ 401 (586)
...+++|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| |..+...++......|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 3468899999999865 44677888888888999999999999998886 3333 455666777777777877 67
Q ss_pred HHHHHHHHhccCCCCc
Q 007881 402 GRIAADNLFKLDPNDS 417 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~ 417 (586)
+.+...++....|+.+
T Consensus 255 ~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 7888888888888765
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.1e-05 Score=80.22 Aligned_cols=365 Identities=14% Similarity=0.138 Sum_probs=213.7
Q ss_pred HHHHHHHHHhCCC--CChhhhHHHHHHHHhcCCchHHHHHhccCC-CCCccc-----HHHHHHHHHcCCChhHHHHHHHH
Q 007881 30 KQLHALALKSGQI--HDVFVGCSAFDMYSKTGLKDDADKMFDEMP-ERNLAT-----WNAYISNAVLGGRPKNAIDAFIN 101 (586)
Q Consensus 30 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~ 101 (586)
+++.++.++.+++ .|+.-.+..+.++...+-..+-+++++++. ++++++ -|.||-...+. +.....+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 4556666666553 355666677788888888888888888764 344443 23344333333 44556666666
Q ss_pred HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHH
Q 007881 102 LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWC 181 (586)
Q Consensus 102 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 181 (586)
+-... .|+ +...+...+-+++|..+|+.. ..+....+.|+. .-+.++.|.+.-++..+ +..|.
T Consensus 1046 LdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWs 1108 (1666)
T KOG0985|consen 1046 LDNYD-APD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWS 1108 (1666)
T ss_pred hccCC-chh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHH
Confidence 54332 122 233344555667777777653 344555555554 34667777777776655 45699
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007881 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++..+.+..-+|.+ -+.||-+|++.+
T Consensus 1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhc
Confidence 9999999999999998877322 36678999999999999999999888888777666554 457888999999
Q ss_pred CHHHHHHHHhhCCCCCee--------------------------HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007881 262 SIQDAEIAFNKMPERNLV--------------------------CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 262 ~~~~A~~~~~~m~~~~~~--------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
++.+-+++... ||+. -|..+...+...|++..|.+.-++. .+.
T Consensus 1181 rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--------ns~ 1249 (1666)
T KOG0985|consen 1181 RLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--------NST 1249 (1666)
T ss_pred hHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--------cch
Confidence 98887766542 3333 3444444444455554444433322 134
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 393 (586)
.||..+-.+|...+.+..|. |.. .++.....-..-|+.-|-..|.+++-+.+++.. +++ .....|+-|.-.|
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 45555555555554443331 211 122223444555666677777777777666654 433 2334455444444
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
.+. +++...+.++.....- ..--++.++.++..|.|..-++.+-
T Consensus 1324 sky-kp~km~EHl~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred Hhc-CHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443 2343333333332210 0112445555666666666555443
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=9.9e-06 Score=81.86 Aligned_cols=258 Identities=16% Similarity=0.157 Sum_probs=184.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHH
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDKNDV--SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLEL 230 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 230 (586)
+.+-....++.+|..+++.+..+++. -|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|.|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34445667788888888888776554 36777889999999999999995432 35567888999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 007881 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE 310 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g 310 (586)
|.++-.+. .|++..+..|-+-..-+-+.|++.+|+++|-.+..|+. -|..|-++|..+..+++..+-.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 98876443 56666777787777788899999999999999988875 4778999999999998887642
Q ss_pred CCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007881 311 AVPN--YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGA 388 (586)
Q Consensus 311 ~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 388 (586)
|| ..|...+..-+-..|+++.|...|-+.. -|.+-+++|-..+.+++|.++-+.-+- .|..--..
T Consensus 878 --~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~ 944 (1636)
T KOG3616|consen 878 --GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVA 944 (1636)
T ss_pred --hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHH
Confidence 33 3566677778888999999999887652 356678899999999999988876532 23333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHH------hcc------------------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 389 LLNACRVYGKPELGRIAADNL------FKL------------------DPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~------~~~------------------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+.+-..-| +.|.+++.+. ... ...-+..+.-++..+...|++++|-+-+-+..
T Consensus 945 flwaksigg--daavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 945 FLWAKSIGG--DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHHhhCc--HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 333322223 4455555542 110 11123455666777788899999977766655
Q ss_pred hC
Q 007881 445 DV 446 (586)
Q Consensus 445 ~~ 446 (586)
+.
T Consensus 1023 kl 1024 (1636)
T KOG3616|consen 1023 KL 1024 (1636)
T ss_pred hc
Confidence 43
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=4.4e-05 Score=76.37 Aligned_cols=195 Identities=9% Similarity=-0.098 Sum_probs=100.9
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH---H
Q 007881 78 TWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITFC-AFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNG---L 152 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l 152 (586)
.|..+...+...|+.+.+...+.+...... .++..... .....+...|+++++.+.++...+.. +.+...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444555555666666555555433211 12221111 11223445577777777777766653 333333331 1
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDKND---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
.......+..+.+.+.++.....+. .....+...+...|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 1112223444555555544222222 223344456677777777777777776643 223445555666666777777
Q ss_pred HHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007881 230 LGRSVHAVAVKACVE-GNI--FVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
+|...+....+.... ++. ..+..+...+...|++++|..+|++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 777777666654321 222 233456666777777777777777654
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.3e-06 Score=93.99 Aligned_cols=209 Identities=14% Similarity=0.179 Sum_probs=172.1
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 235 HAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--------RNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
|.+.+...+. ....|-..|......+++++|++++++... .-...|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 3444444433 455677778888899999999999998764 2345788888888888888899999999987
Q ss_pred ccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC
Q 007881 307 MRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT 382 (586)
Q Consensus 307 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~ 382 (586)
. --....|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.+. |-+-.
T Consensus 1526 --y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1526 --Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred --h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 2 22346688999999999999999999999999876 56778999999999999999999999886 32223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007881 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
.....-.+..-.++|+.+.+..+|+..+...|.....|..++.+-.+.|..+.++.+|++....++.+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 44555556666789999999999999999999999999999999999999999999999999987754
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=2.3e-05 Score=88.87 Aligned_cols=326 Identities=12% Similarity=0.009 Sum_probs=204.6
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCC---h---h--hHHHHHHHHHH
Q 007881 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII----DKN---D---V--SWCSMLVVYVQ 189 (586)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~---~---~--~~~~li~~~~~ 189 (586)
...|+++.+...+..+.......+..........+...|++++|...++... ..+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3446666666665544211111223333445556678899999888876542 111 1 1 11223345668
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhcccCcHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhc
Q 007881 190 NYEEENGCQMFLTARREGVEPKD----FMISSVLSACARIAGLELGRSVHAVAVKACV-----EGNIFVGSALVDMYGKC 260 (586)
Q Consensus 190 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~ 260 (586)
.|++++|...+++....--..+. ...+.+...+...|+++.|...+.+.....- .........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 99999999999987763111122 2334455566778999999999888765311 11223455667788889
Q ss_pred CCHHHHHHHHhhCCC-------CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHhhc
Q 007881 261 GSIQDAEIAFNKMPE-------RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTLVCVLSACSR 327 (586)
Q Consensus 261 g~~~~A~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~~~ll~a~~~ 327 (586)
|++++|...+++... ++ ...+..+...+...|++++|...+.+.........|. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 11 1234445556777899999999998876521122222 3344456667788
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHc
Q 007881 328 AGAVEKGMKIFYSMTLKYGIKPGAEHY-----ACVVDLLGRAGLVDRAYEIIKEMPMR--PTI----SVWGALLNACRVY 396 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 396 (586)
.|+.++|...+...............+ ...+..+...|+.+.|.+++...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875321111111111 11224456689999999998776211 111 1234566678889
Q ss_pred CCHHHHHHHHHHHhccC------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 397 GKPELGRIAADNLFKLD------PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
|+.++|...++++.... +....+...++.+|...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988752 1223467788889999999999999999988744
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00017 Score=71.82 Aligned_cols=336 Identities=13% Similarity=0.042 Sum_probs=186.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHH--HHh
Q 007881 83 ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNG--LVDF--YGK 158 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--ll~~--~~~ 158 (586)
++-+.+.|++++|+....++...+ +-|...+..=+-++.+.+.+++|..+.+. .+ -..+++. +=.+ ..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 345566788888888888887754 22344455555567777778877754432 11 1111222 2233 347
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007881 159 CNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEP-KDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
.+..++|...++.....+..+...-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-... .+ ..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HH
Confidence 7888888888885555554455556677788899999999999887765332 111222222221110 11 01
Q ss_pred HHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHhhCC--------CCCe----------eHHHHHHHHHHhcCCHHH
Q 007881 238 AVKACVEGNIFVGSAL---VDMYGKCGSIQDAEIAFNKMP--------ERNL----------VCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--------~~~~----------~~~~~li~~~~~~g~~~~ 296 (586)
+......| ..+|..+ .-.+...|++.+|+++++... +.|. ..--.|.-.+...|+..+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11122222 2233333 334567889999999888761 1111 112234445677899999
Q ss_pred HHHHHHHhhhccCCCCCCHHH----HHHHHHHhhccCCHH--HHHHHHHHhHHhc------CC--CCChHHH--HHHHHH
Q 007881 297 ALSSFEEMTSMRCEAVPNYVT----LVCVLSACSRAGAVE--KGMKIFYSMTLKY------GI--KPGAEHY--ACVVDL 360 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t----~~~ll~a~~~~g~~~--~a~~~~~~~~~~~------~~--~p~~~~~--~~li~~ 360 (586)
|.+++...++ .. .+|... -|.|+ +...-.++- .++..++...... .+ .--...+ ++++.+
T Consensus 243 a~~iy~~~i~--~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 243 ASSIYVDIIK--RN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHH--hc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 32 345422 22332 222222211 1222222221100 00 0001122 233333
Q ss_pred HHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHH-c-CCHHHHHHHHHHHhccCCCC-chhHHHHHHHHhhcCChHHH
Q 007881 361 LGRAGLVDRAYEIIKEMPMR-PTISVWGALLNACRV-Y-GKPELGRIAADNLFKLDPND-SGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a 436 (586)
| .+..+.+.++-...+.. |. ..+..++..+.+ . .....+..++....+..|.+ ..+...++......|+|+.|
T Consensus 319 ~--tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred H--hhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 56667778887777443 44 445555554322 2 24677888888888888876 44555677888999999999
Q ss_pred HHHHH
Q 007881 437 DLVRK 441 (586)
Q Consensus 437 ~~~~~ 441 (586)
.+++.
T Consensus 396 ~~il~ 400 (652)
T KOG2376|consen 396 LEILS 400 (652)
T ss_pred HHHHH
Confidence 99999
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.9e-08 Score=59.13 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=25.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007881 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777788888888888888888888877774
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=3.8e-06 Score=75.98 Aligned_cols=303 Identities=15% Similarity=0.060 Sum_probs=156.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHH-HHHHHHHc
Q 007881 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--KNDVSWCS-MLVVYVQN 190 (586)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 190 (586)
+++++..+.+..++..+.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555444442 22444455555666666666666666655532 22222211 12344556
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007881 191 YEEENGCQMFLTARREGVEPKDFMISSVLSA--CARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEI 268 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 268 (586)
+.+.+|+.+...|.+. |+...-..-+.+ ..+.+++..++.+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6667777776666542 222111111111 233455555555555443222 22333333334456677777777
Q ss_pred HHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007881 269 AFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 269 ~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
-|+...+ ....+||.-+. ..+.|+.+.|++...++++ .|++-.+.. ..|...++..+ +.+
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIie--RG~r~HPEl---------gIGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIE--RGIRQHPEL---------GIGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHH--hhhhcCCcc---------CccceeccCch-hcc---
Confidence 7766554 34455554433 3345667777777777666 333211100 00000000000 000
Q ss_pred cCCCCChHHHHHHH-------HHHHhcCChHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007881 345 YGIKPGAEHYACVV-------DLLGRAGLVDRAYEIIKEMPMR----PTISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 345 ~~~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
| .|-.-+-+.++ ..+.+.|+++.|.+-+..||-+ .|++|...+.-. -..+++..+..-+.-+++++
T Consensus 230 -g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 -G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 0 01111222333 3456788888888888888432 466666554332 23455666777777778888
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 414 PNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 414 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
|-.+.++..+.-+|++..-++-|..++-+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 87788888888888888888888777654
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00011 Score=77.21 Aligned_cols=381 Identities=13% Similarity=0.093 Sum_probs=246.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhH
Q 007881 15 CLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 94 (586)
-+..-+-+.+++..-...++..++.| ..|+.++|+|...|...++-.+ +++.+ |..--+..+.-||..+++.-
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~l 915 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHL 915 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCce
Confidence 34455566777777788888888888 5789999999999987764332 22222 11111222334555544444
Q ss_pred HHHHHHHHHHC----CCCCChhhHHHHHHHHhcCCChHH-----------HHHHHHHHHHhCCC--CChhHHHHHHHHHH
Q 007881 95 AIDAFINLRRT----GGEPDLITFCAFLNACSDCSLLQL-----------GRQLHGFLVRSGFD--GNVSVCNGLVDFYG 157 (586)
Q Consensus 95 A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~g~~--~~~~~~~~ll~~~~ 157 (586)
|.-.|++=... .+--....|....+-+....+.+. -+++.++.++.+++ .|+.-.+.-+.++.
T Consensus 916 A~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 916 ACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred EEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 33333221000 001111223333333333333222 33556666666543 34556667788888
Q ss_pred hcCChHHHHHHHhcCC-CCChhh-----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHH
Q 007881 158 KCNEVGLAKVVFDGII-DKNDVS-----WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG 231 (586)
Q Consensus 158 ~~g~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 231 (586)
..+-..+-.++++++. ++++.+ -|.||-. +-.-+....++..+++-.-. .|+ +...+...+-+++|
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEA 1067 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHH
Confidence 8888888888888874 333332 2233332 33345566777776665432 222 23345556677888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q 007881 232 RSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEA 311 (586)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~ 311 (586)
..+|... ..+....+.||+ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1068 F~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------- 1130 (1666)
T KOG0985|consen 1068 FAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------- 1130 (1666)
T ss_pred HHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-------
Confidence 8888654 234555555554 467889999888888765 57999999999999999999988553
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 007881 312 VPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLN 391 (586)
Q Consensus 312 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 391 (586)
-|+..|.-++..+.+.|.+++-.+++....++ .-.|.+. +.||-+|++.+++.+-++++. -||..-...+..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 36778999999999999999999999888665 5566544 578999999999999887764 477777788888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
-|...+.++.|.-++... +.|..|+..+...|.+..|...-++.
T Consensus 1203 rcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 899999998888887653 55667777777777777666554443
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.00013 Score=82.69 Aligned_cols=361 Identities=11% Similarity=-0.043 Sum_probs=217.1
Q ss_pred HHhcCCchHHHHHhccCCCCCccc--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 007881 55 YSKTGLKDDADKMFDEMPERNLAT--WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQ 132 (586)
Q Consensus 55 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 132 (586)
+...|++.+|..........+... .......+...|++..+...++.+.......+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 444455555555444443322111 011112344567777766666655221111122222333444567789999999
Q ss_pred HHHHHHHhCC------CCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCh----hhHHHHHHHHHHcCChHHH
Q 007881 133 LHGFLVRSGF------DGN--VSVCNGLVDFYGKCNEVGLAKVVFDGIID----KND----VSWCSMLVVYVQNYEEENG 196 (586)
Q Consensus 133 ~~~~~~~~g~------~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A 196 (586)
.+..+.+.-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8887754311 111 12223344566789999999998876532 222 2445666778889999999
Q ss_pred HHHHHHHHHCCC---CC--CHhHHHHHHHHHhcccCcHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHH
Q 007881 197 CQMFLTARREGV---EP--KDFMISSVLSACARIAGLELGRSVHAVAVKA----CVE--G-NIFVGSALVDMYGKCGSIQ 264 (586)
Q Consensus 197 ~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~ 264 (586)
...+.+.....- .+ ...++..+...+...|+++.|...+.+.... +.. + ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999988764311 11 1234445566778899999999998877652 221 1 2334555666777889999
Q ss_pred HHHHHHhhCCC------C--CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHH--HHHHHHhhccCCHH
Q 007881 265 DAEIAFNKMPE------R--NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTL--VCVLSACSRAGAVE 332 (586)
Q Consensus 265 ~A~~~~~~m~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~--~~ll~a~~~~g~~~ 332 (586)
+|...+++... + ....+..+...+...|+.++|.+.+.+.........+. .... ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99998887642 1 12334445567788999999999998875411111111 1010 11224445688999
Q ss_pred HHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007881 333 KGMKIFYSMTLKYGIKPG---AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPT-ISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~ 401 (586)
.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++
T Consensus 671 ~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 671 AAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998776431 11111 111345677788999999999998876 21221 2355666677899999999
Q ss_pred HHHHHHHHhccCCCC
Q 007881 402 GRIAADNLFKLDPND 416 (586)
Q Consensus 402 a~~~~~~~~~~~p~~ 416 (586)
|...+.+++++....
T Consensus 750 A~~~L~~Al~la~~~ 764 (903)
T PRK04841 750 AQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999986443
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=0.00018 Score=70.93 Aligned_cols=394 Identities=13% Similarity=0.015 Sum_probs=244.2
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CC-cccHHHHHHHHHcCCChhHH
Q 007881 19 ASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RN-LATWNAYISNAVLGGRPKNA 95 (586)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 95 (586)
+....|+++.|...|...+... +++...|+.-..+|++.|++++|++==.+-.+ |+ ...|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3456799999999999999876 56888999999999999999998765444332 33 34688888888889999999
Q ss_pred HHHHHHHHHCCCCC-ChhhHHHHHHHHhcC---CChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHH----------h
Q 007881 96 IDAFINLRRTGGEP-DLITFCAFLNACSDC---SLLQLGRQLHGFLVRSG---FDGNVSVCNGLVDFYG----------K 158 (586)
Q Consensus 96 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~----------~ 158 (586)
+.-|.+=++. .| |...++.+..+.... ++.-..-.++....... .......|..++..+- .
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999987764 34 344556666655111 00000001111111000 0000112222222221 1
Q ss_pred cCChHHHHHHHhcC----------------CCC------------C----------hhhHHHHHHHHHHcCChHHHHHHH
Q 007881 159 CNEVGLAKVVFDGI----------------IDK------------N----------DVSWCSMLVVYVQNYEEENGCQMF 200 (586)
Q Consensus 159 ~g~~~~A~~~~~~~----------------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~ 200 (586)
-.++..|...+... .+| | ..-.-.+.++..+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11222232222111 111 0 012344666777788888898888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHH-------HHHHHHHHhcCCHHHHHHHHhhC
Q 007881 201 LTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG-------SALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 201 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~~m 273 (586)
....... -+..-++....++...|........-...++.|-. ...-| ..+..+|.+.++++.|...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 8877643 33333445556677777777776666665555433 11122 22445778888999999999885
Q ss_pred CCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH
Q 007881 274 PERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE 352 (586)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 352 (586)
..+... -....+....++++.......- +.|+. .-...-...+.+.|++..|+..|.+++++ -+-|..
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~----~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~ 393 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAY----INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDAR 393 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHh----hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhH
Confidence 431111 1112223345555555555433 34553 12223366788999999999999999865 244688
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA 429 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (586)
.|+...-+|.+.|.+.+|++-.+.. ...|+ ...|.--..++....+++.|...|.+.++.+|.+......+...+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999998876665 44554 34555556667777899999999999999999987766666555443
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=9e-08 Score=57.97 Aligned_cols=32 Identities=38% Similarity=0.665 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 346 GIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 346 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67788888888888888888888888888777
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=2.6e-05 Score=81.72 Aligned_cols=383 Identities=12% Similarity=-0.028 Sum_probs=225.0
Q ss_pred CCCCC-hhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCChhhH
Q 007881 40 GQIHD-VFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITF 114 (586)
Q Consensus 40 g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~ 114 (586)
.+.++ ...|..|...|....+...|.+-|+..-+ -|..++-.....|++..+++.|+.+.-.--+... ..-...|
T Consensus 486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 33444 35788899999888888899999987655 4667888999999999999999998332222110 0011122
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH---HHHHHHHcC
Q 007881 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCS---MLVVYVQNY 191 (586)
Q Consensus 115 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g 191 (586)
...--.+-..++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 223334567788888998888888775 5578899999999999999999999998876655544432 223346789
Q ss_pred ChHHHHHHHHHHHHCC------CCCCHhHHHHHHHHHhcccCcHHHHHHHH-------HHHHhCCCCchhHHHHHHHHHH
Q 007881 192 EEENGCQMFLTARREG------VEPKDFMISSVLSACARIAGLELGRSVHA-------VAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 192 ~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.+.+|+..+....... ..--..++..+...+...|-...+..+++ -........+...+-.+
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----- 719 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----- 719 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----
Confidence 9999999887775421 11111222222222222332233333332 22222222222222222
Q ss_pred hcCCHHHHHHHHhhCCCCCee--HHHHHHHH-HHhcCCH---H---HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc--
Q 007881 259 KCGSIQDAEIAFNKMPERNLV--CWNAIIGG-YAHQGHA---D---MALSSFEEMTSMRCEAVPNYVTLVCVLSACSR-- 327 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~-- 327 (586)
.+|..+|-... |+.+ .+..++.. +-..+.. | -+.+.+-.-++ ...+..+|..++..|.+
T Consensus 720 -----sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls----l~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 720 -----SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS----LAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred -----hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH----HhhccchHHHHhHHHHHHH
Confidence 23334444443 3321 11111111 1111111 1 11111111111 11233444444333322
Q ss_pred --c---C-CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC
Q 007881 328 --A---G-AVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGK 398 (586)
Q Consensus 328 --~---g-~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~ 398 (586)
. + +...|+..+...++ ...+ ...|+.|. .+...|.+.-|.--|-+. ..+....+|..+...|.+..+
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~---L~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVS---LCANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHH---HhhccHHHHHHHH-HhhccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 1 2 23466777766653 2333 44555544 446667777666655444 223466788888888889999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 399 PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
++.|...|.....++|.+...+...+......|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888777777788888888887776
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=0.00012 Score=67.86 Aligned_cols=306 Identities=10% Similarity=0.020 Sum_probs=149.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHH
Q 007881 81 AYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAF---LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVC-NGLVDFY 156 (586)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~ 156 (586)
-+-..+...|++..|+.-|....+- |+..|.++ ...|...|+...|..-+..+++. .||-..- ---...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3445555666666666666665542 22223322 22355556655666656555554 3442211 1112234
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHH
Q 007881 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 236 (586)
.+.|.++.|..=|+.+.+.++.- +....++.+.-..++- ......+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHH
Confidence 55566666665555543322110 0000111110000111 112223334455666667777776
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC
Q 007881 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP 313 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p 313 (586)
.+++..+ .|...+..-..+|...|++..|+.-+.... ..+....--+-..+..-|+.+.++...++-.+ +.|
T Consensus 180 ~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldp 254 (504)
T KOG0624|consen 180 HLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDP 254 (504)
T ss_pred HHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCc
Confidence 6666543 366677777777777777777766555443 35555555566666777777777777777766 346
Q ss_pred CHHH-HH---HH---------HHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHH
Q 007881 314 NYVT-LV---CV---------LSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACVVDLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 314 d~~t-~~---~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~ 375 (586)
|... |. .+ +......+.+.++++-.+...+. .|. ...+..+-.++...|++.+|++...
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 6422 11 11 01122334444444444444322 232 1122233344444555555555555
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 376 EM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 376 ~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
+. .+.|| +.++---..+|.....++.|+.-++++.+.++++.
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 44 33443 44444444555555555666666666665555543
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=6.2e-06 Score=77.07 Aligned_cols=179 Identities=9% Similarity=-0.016 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe----eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY---- 315 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~---- 315 (586)
....+..+...|.+.|++++|...|+++.+ |+. .+|..+..+|.+.|++++|...++++.+. .|+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----HPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCCchH
Confidence 455667777888889999999998887754 332 35677788888899999999999998872 2432
Q ss_pred HHHHHHHHHhhcc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 007881 316 VTLVCVLSACSRA--------GAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVW 386 (586)
Q Consensus 316 ~t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 386 (586)
.++..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHH
Confidence 2444555555544 6788888888888754 44432 22222111 1011100 0011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 387 GALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+...+...|+++.|...++++.+..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 245566888999999999999999987654 468889999999999999999999988764
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.47 E-value=0.00023 Score=66.12 Aligned_cols=356 Identities=10% Similarity=0.028 Sum_probs=227.4
Q ss_pred hhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHH---HHHHcCCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHH
Q 007881 46 FVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYI---SNAVLGGRPKNAIDAFINLRRTGGEPDLITFC-AFLNAC 121 (586)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~ 121 (586)
.-.--|...+...|++.+|+.-|....+-|+..|-++. ..|...|+-..|+.=+.+.++ ++||-..-. .--..+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 33345667777889999999999999888888888876 468888999999999999887 688854322 122346
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 007881 122 SDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFL 201 (586)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (586)
.+.|.++.|..-|+.+++.. |+..+ ...++.+.-..++-..+ ...+..+.-.|+...|+....
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHH
Confidence 78899999999999999874 32211 12222222222221111 223445566777777777777
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee
Q 007881 202 TARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLV 279 (586)
Q Consensus 202 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~ 279 (586)
.+.+-. +-|...+..-..+|...|.+..|..=+....+..-. ++...--+-..+...|+.+.++...++..+ ||.-
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 777632 235555666666777777777777666666555433 444444556667777777777777776654 3322
Q ss_pred ----HHHHH---------HHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHH---HHHHHHHhhccCCHHHHHHHHHHh
Q 007881 280 ----CWNAI---------IGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVT---LVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 280 ----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t---~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
.|..+ +......+++.++++-.+...+ .. |. .++ +..+-.++...|.+.+|++...++
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cC--CcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 11111 1234567888889888888877 32 43 233 344556777889999999999988
Q ss_pred HHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 342 TLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 342 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
. .+.|| +.++.--.++|.-...+++|+.-|+.. ...++.. ...++++-.+++.+.... ...
T Consensus 334 L---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-------------~~reGle~Akrlkkqs~k-RDY 396 (504)
T KOG0624|consen 334 L---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-------------RAREGLERAKRLKKQSGK-RDY 396 (504)
T ss_pred H---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-------------HHHHHHHHHHHHHHHhcc-chH
Confidence 6 56776 888888889999999999999999887 3333321 223334444444433211 123
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 420 HVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|-.|+ -.+...-.+-.+.+++|..
T Consensus 397 YKILG--VkRnAsKqEI~KAYRKlAq 420 (504)
T KOG0624|consen 397 YKILG--VKRNASKQEITKAYRKLAQ 420 (504)
T ss_pred HHHhh--hcccccHHHHHHHHHHHHH
Confidence 44443 2344455666677777754
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=0.00092 Score=69.09 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=44.0
Q ss_pred CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHh
Q 007881 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAH 290 (586)
Q Consensus 211 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 290 (586)
|...|..-..-+-..|+.+.|..+|..+.. |-+++...|-.|+.++|-++-++- .|..+...+...|-.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYEN 979 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhh
Confidence 333444444444556666666666655433 233444455556666665555442 234444445555555
Q ss_pred cCCHHHHHHHHHHhh
Q 007881 291 QGHADMALSSFEEMT 305 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~ 305 (586)
.|++.+|..+|.+.+
T Consensus 980 ~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566666665555443
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=0.0002 Score=75.49 Aligned_cols=421 Identities=11% Similarity=-0.014 Sum_probs=232.4
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCC---cccHHHHH--HHH
Q 007881 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERN---LATWNAYI--SNA 86 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li--~~~ 86 (586)
.|+.+-..|....+...|+..|+...+.. ..+...+....+.|++..+++.|..+.-...+.+ ...||.+- -.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 35555555555556667777777776654 4566778889999999999999988743333221 11233322 235
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 007881 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAK 166 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 166 (586)
.+.++...|+.-|+...+..++ |...|..+..+|...|++..|.++|..+.... +.+.+.---..-+-+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5667777777777776654332 55567777777777777777777776665542 112222222333445566677766
Q ss_pred HHHhcCCCC----------ChhhHHHHHHHHHHcCChHHHHHHHHHH-------HHCCCCCCHhHHHHHHHH--------
Q 007881 167 VVFDGIIDK----------NDVSWCSMLVVYVQNYEEENGCQMFLTA-------RREGVEPKDFMISSVLSA-------- 221 (586)
Q Consensus 167 ~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~p~~~t~~~ll~~-------- 221 (586)
..+..+... -..++-.+...+.-.|-..+|..+|++- .......+...|-.+-.+
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 666554211 0112222222222222222222222221 111111111111111111
Q ss_pred ---------------HhcccCc---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC----CHHHHHHHHhh
Q 007881 222 ---------------CARIAGL---E---LGRSVHAVAVKACVEGNIFVGSALVDMYGK----CG----SIQDAEIAFNK 272 (586)
Q Consensus 222 ---------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~ 272 (586)
.-..+.. + .|-+.+-.- ..+..+...+..|+.-|.+ +| +...|...+..
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 1122221 1 011111000 1111122333333333322 22 22355666655
Q ss_pred CCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC
Q 007881 273 MPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP 349 (586)
Q Consensus 273 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 349 (586)
..+ .+...||.|.-. ...|++.-|...|-+-.. . .+-...+|..+.-.|....+++.|...|.... .+.|
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP 881 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--S-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDP 881 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--c-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCc
Confidence 442 667788876554 555677777666655544 1 22356778888778888999999999998885 4566
Q ss_pred C-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHhc
Q 007881 350 G-AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPTISVWGALLNACRVYGKPELGRI----------AADNLFK 411 (586)
Q Consensus 350 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~----------~~~~~~~ 411 (586)
+ ...|-.........|+.-++..+|..- +--|+..-|.+...-...+|+.++-+. ..++...
T Consensus 882 ~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~ 961 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL 961 (1238)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh
Confidence 4 455554444455678888888888762 223566566555555566666665443 3444455
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 412 LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
..|+...+|...+....+.+.+.+|.+...+..
T Consensus 962 ~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 962 GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 679999999999998888898888888776653
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=7.5e-06 Score=80.97 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=154.8
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHH
Q 007881 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGC 197 (586)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 197 (586)
+.+.|++.+|.-.|+..++.. +.+...|-.|.......++-..|+..+.+..+- |....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346788999999999888885 557788888888888888888888888877553 4556666777888899999999
Q ss_pred HHHHHHHHCCCC--------CCHhHHHHHHHHHhcccCcHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007881 198 QMFLTARREGVE--------PKDFMISSVLSACARIAGLELGRSVHAVAVK-ACVEGNIFVGSALVDMYGKCGSIQDAEI 268 (586)
Q Consensus 198 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 268 (586)
..|+.-.....+ ++..+-.. ..+.....+....++|-++.. .+..+|..++..|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988887653210 01000000 111222233444555544444 4445788888888888989999999999
Q ss_pred HHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 269 AFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 269 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
.|+.... .|...||-|...++...+.++|+..|++.++ ++|+. ...-.|.-+|...|.+++|...|-.++
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9988764 4668899999999999999999999999987 66773 334455667889999999988886654
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=7.2e-06 Score=69.59 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=84.1
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 299 SSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 299 ~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++.
T Consensus 14 ~~~~~al~----~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLS----VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHH----cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555554 33543 44556677778888888888877763 344 4667777777788888888888888776
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007881 378 -PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 378 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
...| +...|..+..++...|+.++|+..++++++..|+++..+.....+.
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3333 5667777777788888888888888888888888877776665544
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=2e-05 Score=70.84 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHH
Q 007881 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC-RVYGK--PELG 402 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~~~--~~~a 402 (586)
.++.+++...++...+. -+.+...|..|...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777766543 2445778888888888888888888888887 4445 556666666664 56666 5899
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 403 RIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987643
No 113
>PLN02789 farnesyltranstransferase
Probab=98.42 E-value=9.3e-05 Score=71.49 Aligned_cols=210 Identities=12% Similarity=0.017 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCH--HHHHHHH
Q 007881 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG-SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHA--DMALSSF 301 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~~~ 301 (586)
.+.|..+...+++..+. +..+++.....+.+.| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.++
T Consensus 53 serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 33444444444443322 2233333333333444 34555555555442 3334455443334444432 4556666
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc---CC----hHHHHHHH
Q 007881 302 EEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA---GL----VDRAYEII 374 (586)
Q Consensus 302 ~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~ 374 (586)
+++.+ .. +-|..+|.....++.+.|+++++++.++.+++. . .-+...|+.....+.+. |. .++++++.
T Consensus 132 ~kal~--~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 132 RKILS--LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHH--hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 66665 21 114555665556666666666677666666543 1 22234444444333333 22 23556665
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-----------------
Q 007881 375 KEM-PMRP-TISVWGALLNACRVY----GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG----------------- 431 (586)
Q Consensus 375 ~~m-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 431 (586)
.++ ...| |...|+-+...+... ++..+|...+.++.+.+|.++.+...|+.+|+...
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 444 3344 567788888777763 34567888888888888998889999999998632
Q ss_pred -ChHHHHHHHHHH
Q 007881 432 -RWEEADLVRKEM 443 (586)
Q Consensus 432 -~~~~a~~~~~~m 443 (586)
..++|.++++.+
T Consensus 287 ~~~~~a~~~~~~l 299 (320)
T PLN02789 287 SDSTLAQAVCSEL 299 (320)
T ss_pred ccHHHHHHHHHHH
Confidence 235677777777
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=3.5e-05 Score=71.96 Aligned_cols=60 Identities=7% Similarity=-0.113 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007881 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIID--KN-D---VSWCSMLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
...+..+...+.+.|++++|...|+++.. |+ . .+|..+...|.+.|++++|+..|+++.+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555554422 11 1 2334445555555555555555555544
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=9e-06 Score=69.00 Aligned_cols=107 Identities=11% Similarity=-0.023 Sum_probs=91.2
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007881 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 336 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
.+|+... .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444443 335553 556788889999999999999997 4444 67888999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 414 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
|+++..+..++.++...|+.++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987743
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.00014 Score=79.05 Aligned_cols=221 Identities=12% Similarity=0.128 Sum_probs=171.7
Q ss_pred CCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CCC---CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C-hhhH
Q 007881 108 EPD-LITFCAFLNACSDCSLLQLGRQLHGFLVRS-GFD---GNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDK-N-DVSW 180 (586)
Q Consensus 108 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~-~~~~ 180 (586)
.|| ...|..-+.-....++++.|+++.++++.. ++. --..+|.++++.-..-|.-+...++|++..+- | -..|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 355 446777777788889999999999988765 111 12457888888888888889999999988653 3 3468
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHh
Q 007881 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYGK 259 (586)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 259 (586)
..|...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+...-+.|+.++.++.+.-++. .+....-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999875 34566778888899999999999999999888765442 34556667778889
Q ss_pred cCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCH
Q 007881 260 CGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAV 331 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~ 331 (586)
+|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++... .++.|-. ..|.-.|..=-..|+-
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~--l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE--LKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHhcCch
Confidence 9999999999998764 3567899999999999999999999999998 6666642 3444444433333443
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.00073 Score=69.82 Aligned_cols=187 Identities=9% Similarity=0.017 Sum_probs=96.4
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHh-C--------CCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccH
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKS-G--------QIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATW 79 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 79 (586)
+...|..+.+.|.+.++++-|+-.+..|... | -.++ ..-....-.....|.+++|+.++.+-++ |
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----Y 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----H
Confidence 3456777777777777777777666665421 1 1121 2222222233455677777777766554 3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH----------HhC--------
Q 007881 80 NAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLV----------RSG-------- 141 (586)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----------~~g-------- 141 (586)
..|=..|-..|.+++|+++-+.=-+-.++ .||..-..-+-..++.+.|.+.|+..- ...
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 33334455566677766665442221111 234333444444555665555544321 110
Q ss_pred -CCCChhHHHHHHHHHHhcCChHHHHHHHhcCC------------------------CCChhhHHHHHHHHHHcCChHHH
Q 007881 142 -FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII------------------------DKNDVSWCSMLVVYVQNYEEENG 196 (586)
Q Consensus 142 -~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~A 196 (586)
-..|...|.-...-.-..|+.+.|+.+|.... ..|.....-+...|-..|++.+|
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence 01233334434444445566666666665431 12444555666777777777777
Q ss_pred HHHHHHHH
Q 007881 197 CQMFLTAR 204 (586)
Q Consensus 197 ~~~~~~m~ 204 (586)
+.+|.+.+
T Consensus 987 v~FfTrAq 994 (1416)
T KOG3617|consen 987 VKFFTRAQ 994 (1416)
T ss_pred HHHHHHHH
Confidence 77776553
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=4.8e-05 Score=81.01 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=123.3
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHH
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEH 353 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 353 (586)
.++..+-.|.....+.|++++|..+++...+ +.|| ......+...+.+.+++++|+...++... ..|+ ...
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~ 156 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSARE 156 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHH
Confidence 3477788888889999999999999999987 5687 45677788899999999999999998874 3555 667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
...+..++.+.|++++|.++|++. ...| +..+|..+..++...|+.++|...|+++.+...+-...|..++ +
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~ 230 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------H
Confidence 788888999999999999999998 2334 4788999999999999999999999999998755444443332 2
Q ss_pred ChHHHHHHHHHHHhCC
Q 007881 432 RWEEADLVRKEMKDVG 447 (586)
Q Consensus 432 ~~~~a~~~~~~m~~~g 447 (586)
++..-..+++++.-.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 231 DLNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHHHcCccc
Confidence 3333445555554333
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=0.0001 Score=66.27 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=116.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007881 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
+-.|.+.|+++.+....+.+..+. . .|...++.++++..++...+ .. +.|...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIR--AN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 456888888887765554433221 0 12235677888888888777 22 3467888899999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007881 334 GMKIFYSMTLKYGIKP-GAEHYACVVDLL-GRAGL--VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
|...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998874 345 577788888864 67777 59999999998 4455 56788888888999999999999999
Q ss_pred HHhccCCCCchhHHH
Q 007881 408 NLFKLDPNDSGNHVL 422 (586)
Q Consensus 408 ~~~~~~p~~~~~~~~ 422 (586)
+++++.|++..-+..
T Consensus 169 ~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 169 KVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHhhCCCCccHHHH
Confidence 999999887654433
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.0001 Score=75.14 Aligned_cols=216 Identities=9% Similarity=0.044 Sum_probs=170.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007881 142 FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSA 221 (586)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 221 (586)
++|-...-..+...+.+.|-..+|..+|++ ...|...|-+|...|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 455556677788899999999999999997 46788899999999999999999888776 37888889888888
Q ss_pred HhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHH
Q 007881 222 CARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMAL 298 (586)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 298 (586)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++...|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 87777788888887665432 122222223346889999999987544 34568888888888999999999
Q ss_pred HHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 299 SSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 299 ~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+++..+- + .-+...|-..+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt----L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT----LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh----cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99998877 4566 578999999999999999999999998753 4 344556666677778899999999998887
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.29 E-value=2.2e-05 Score=65.57 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
....-.+...+...|++++|..+|+-. ...| +..-|..|..+|...|++++|+..+.++..++|+++..+..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455666778899999999999987 4445 56678889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007881 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999998763
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.4e-06 Score=53.67 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh
Q 007881 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDL 111 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 111 (586)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.0092 Score=62.83 Aligned_cols=411 Identities=12% Similarity=0.065 Sum_probs=239.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCCChhhhHHHHHH--HHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHH
Q 007881 22 ALHIPVTGKQLHALALKSGQIHDVFVGCSAFDM--YSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAI 96 (586)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 96 (586)
..+++..|.+-.+.+.+. .|+. .|...+.+ ..|.|+.++|..+++.... .|..|...+-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456788888888888775 2443 23333443 3478999999988887654 36678888888999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHH
Q 007881 97 DAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE----------VGLAK 166 (586)
Q Consensus 97 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~ 166 (586)
.+|++.... -|+..-...+..++.+.+++.+-.++--++-+. ++.+.+.+=++++.+...-. +.-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998763 577777888888898888877655544444333 45556666666666655422 33456
Q ss_pred HHHhcCCCCC-h-hhH---HHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH
Q 007881 167 VVFDGIIDKN-D-VSW---CSMLVVYVQNYEEENGCQMFL-TARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 167 ~~~~~~~~~~-~-~~~---~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (586)
+.++.+.+.+ . .+- -.-...+-..|++++|++++. ..-+.-...+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6666665544 1 111 111233456788999999884 333332333444445566777788889998888888888
Q ss_pred hCCCCchhHHHHHHHHHHh----------------cCCHHHHHHHHhhCCC-CCeeHHHHHHHHHH---hcCCHHHHHHH
Q 007881 241 ACVEGNIFVGSALVDMYGK----------------CGSIQDAEIAFNKMPE-RNLVCWNAIIGGYA---HQGHADMALSS 300 (586)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~---~~g~~~~A~~~ 300 (586)
.|.. | |...++.+.+ .+.++...+..++... ..-..|-+-+..+. .-|+.+++...
T Consensus 255 k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 8765 2 3333333222 2333333333332221 12223333333333 34777776655
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChH-------HHHHHHHHHHhcCCh-----H
Q 007881 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAE-------HYACVVDLLGRAGLV-----D 368 (586)
Q Consensus 301 ~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~ 368 (586)
|-+- -|-+| .+..=+..|...=..++-..++.... +..++.. -+.+.+....-.|.+ +
T Consensus 331 y~~k----fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 331 YFKK----FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHH----hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 4332 22222 11112222222222233333333332 1122211 122222222223311 1
Q ss_pred HHHHHHHhC------C------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCCCchhHHHHH
Q 007881 369 RAYEIIKEM------P------MRPTI---------SVWGALLNACRVYGKPE---LGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 369 ~A~~~~~~m------~------~~p~~---------~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.-..++++. + .-|+. -+.+.|+..+++.++.. +|+-+++......|.|..+-..++
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 122222221 1 11222 34567788888888754 788888888889999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCccCC
Q 007881 425 NMFAATGRWEEADLVRKEMKDVGIKKGA 452 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 452 (586)
.+|+-.|-+..|.++++.+--+.|..+.
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 9999999999999999998777776654
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=4e-05 Score=78.01 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=150.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
++|--..-..+...+.++|-...|..+|++. ..|...|.+|+..|+..+|..+..+-.+ -+||+..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le----k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE----KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc----CCCcchhHHHhh
Confidence 3444455667888999999999999999984 5788899999999999999998887766 358999999999
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
.......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 9888888899999999876432 1111222233468888888888764 4443 4568888888888888999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.|.+.|.....++|++...|+.++.+|.+.|+..+|...+++..+-.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999988887765
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.25 E-value=8.5e-05 Score=66.70 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=96.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc
Q 007881 319 VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVY 396 (586)
Q Consensus 319 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 396 (586)
..+-.++.-.|+-+....+...... .-..|......++....+.|++.+|...|++. +-.+|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 5555666777777777777766532 22334555666778888888888888888887 4446778888888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 397 GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
|+.++|...+.+++++.|+++.....++..|.-.|+.++|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888888776543
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.23 E-value=0.0074 Score=59.92 Aligned_cols=428 Identities=12% Similarity=0.084 Sum_probs=244.1
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHH
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNA 86 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 86 (586)
|..+|+.||+-+... ..++++..+++++.. ++..+..|..-|..-.+..+++..+++|.+... -++..|..-|+--
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 677788888876655 788888888888764 456677788888888888888888888887653 4667777776533
Q ss_pred Hc-CCChhH----HHHHHHH-HHHCCCCCChh-hHHH---HHHH------HhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 007881 87 VL-GGRPKN----AIDAFIN-LRRTGGEPDLI-TFCA---FLNA------CSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 87 ~~-~g~~~~----A~~~~~~-m~~~g~~p~~~-t~~~---ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
-+ .|.... ....|+- |.+.|+.|-+. .|+. .+.. +....+++..++++..++...+..=...|+
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 22 233322 2223332 23445444332 2333 3332 222334556667777776543221111221
Q ss_pred H------HHHHH-------HhcCChHHHHHHHhcCCC------CC---------------hhhHHHHHHHHHHcCCh---
Q 007881 151 G------LVDFY-------GKCNEVGLAKVVFDGIID------KN---------------DVSWCSMLVVYVQNYEE--- 193 (586)
Q Consensus 151 ~------ll~~~-------~~~g~~~~A~~~~~~~~~------~~---------------~~~~~~li~~~~~~g~~--- 193 (586)
- =|+.. -+...+-.|+++++++.. ++ +..|-.+|.-=-.++.-
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 1 11110 122344556666655411 11 11243333321111110
Q ss_pred -----HHHHHHHHH-HHHCCCCCCHhHH-HHHH----HHHhcccC-------cHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007881 194 -----ENGCQMFLT-ARREGVEPKDFMI-SSVL----SACARIAG-------LELGRSVHAVAVKACVEGNIFVGSALVD 255 (586)
Q Consensus 194 -----~~A~~~~~~-m~~~g~~p~~~t~-~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 255 (586)
....-.+++ |.--+..|+.... ...+ ..+...|+ -+++..+++..+..-...+..+|..+.+
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~ 336 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD 336 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011111111 1222334433211 1111 11222232 4677788888777655556666666654
Q ss_pred HHHhcC---CHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhc
Q 007881 256 MYGKCG---SIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSR 327 (586)
Q Consensus 256 ~~~~~g---~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~ 327 (586)
.=-..- ..+.....+++... .-..+|-..+..-.+..-...|..+|.+..+ .+..+ +....++++.-+ .
T Consensus 337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~--~~r~~hhVfVa~A~mEy~-c 413 (656)
T KOG1914|consen 337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE--DKRTRHHVFVAAALMEYY-C 413 (656)
T ss_pred hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh--ccCCcchhhHHHHHHHHH-h
Confidence 321111 24455555555442 3445777778777777778899999999998 66666 556666777655 4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHH
Q 007881 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM---PMRPT--ISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a 402 (586)
+++.+-|.++|+.=.+++|-. ..--...++-+...++-..|..+|++. .+.|| ..+|..+|.-=..-|+...+
T Consensus 414 skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 688899999999877765433 344467788889999999999999987 23333 47899999998899999999
Q ss_pred HHHHHHHhccCCCC----chhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 403 RIAADNLFKLDPND----SGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 403 ~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
..+-++....-|.+ ...-..+.+.|.-.+....-..-++.|
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88888877655521 123334555566555554444333333
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.3e-06 Score=52.60 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 007881 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD 212 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 212 (586)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00018 Score=64.67 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=83.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007881 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 363 (586)
+-..+...|+.+....+...... .-.-|.......+......|++.+|...|.+... .-++|...|+.+.-+|.+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 34445555555555555544332 1111233333455555566666666666665542 334455666666666666
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 007881 364 AGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
.|+.++|..-|.+. .+.| +....+.|...+.-.|+.+.|..++.......+.++.+-..|.-+....|++++|..+-
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666555554 2222 34455566666666666666666666666666656666666666666666666665543
No 129
>PLN02789 farnesyltranstransferase
Probab=98.16 E-value=0.001 Score=64.28 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=113.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007881 186 VYVQNYEEENGCQMFLTARREGVEPKDF-MISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
.+...++.++|+.+..++.+. .|+.. .|..--.++...| .++++...+..+.+..++ +..+++-....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 344455666666666666552 34333 2332223333444 456666666666665544 344444443344444442
Q ss_pred --HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhcc---CC----H
Q 007881 264 --QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRA---GA----V 331 (586)
Q Consensus 264 --~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~---g~----~ 331 (586)
+++..+++++.+ .|..+|+...-.+...|+++++++.+.++++ .+. -|...|+.....+.+. |. .
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDV-RNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCC-CchhHHHHHHHHHHhccccccccccH
Confidence 455566655543 4556666666666666777777777777766 331 2344444443333332 21 2
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC--------
Q 007881 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA----GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG-------- 397 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-------- 397 (586)
++.+.+...++.. .+-+...|+.+...|... ++..+|.+++.+. ...| +......|+..|+...
T Consensus 200 e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 3455555444432 122355566565555552 3345566666654 2233 4455566666655421
Q ss_pred ----------CHHHHHHHHHHHhccCCC
Q 007881 398 ----------KPELGRIAADNLFKLDPN 415 (586)
Q Consensus 398 ----------~~~~a~~~~~~~~~~~p~ 415 (586)
..++|..+++.+.+.+|-
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235667777766544553
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00038 Score=68.05 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACV 357 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 357 (586)
.+--..-.+...|++++|+..++.+.. . .|| ..........+...++.++|.+.++.+.. ..|+ ....-.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--A--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 333344455667888999999988877 2 355 44444556778888999999999988874 4666 5566677
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007881 358 VDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
.++|.+.|++.+|+.++++. ..+-|+..|..|..+|...|+..++.... +..|+..|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 88888999999999888887 33446778899999999988877665543 345778899999
Q ss_pred HHHHHHHHHhC
Q 007881 436 ADLVRKEMKDV 446 (586)
Q Consensus 436 a~~~~~~m~~~ 446 (586)
|...+....++
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 99888888765
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=3.6e-06 Score=51.37 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 007881 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEP 109 (586)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 109 (586)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578889999999999999999999998888887
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.00051 Score=73.35 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=117.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHH
Q 007881 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTL 318 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~ 318 (586)
...++..+-.|.......|.+++|+.+++...+ | +...+..+...+.+.+++++|+..+++... ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHHHH
Confidence 445688888899999999999999999999875 5 445777788999999999999999999988 3476 4566
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 007881 319 VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLN 391 (586)
Q Consensus 319 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 391 (586)
..+..++.+.|++++|..+|+++... .|+ ...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 67778899999999999999999752 344 788899999999999999999999998 33455566665554
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=5.8e-05 Score=63.51 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007881 348 KPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 348 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++.+.+|+++..+..++
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 443 344556667777788888888888776 3333 5667777777788888888888888888888888888888888
Q ss_pred HHHhhcCChHHHHHHHHHHHhC
Q 007881 425 NMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..|...|++++|...++...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887764
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00011 Score=72.35 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=101.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACR 394 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 394 (586)
...+++..+...++++.|+.+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3446677777888999999999998754 455 4455788888888888999998887 3333 5556666666688
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
..++++.|+.+++++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999875
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.00041 Score=67.85 Aligned_cols=177 Identities=19% Similarity=0.125 Sum_probs=129.1
Q ss_pred CHHHHHHHHhhCCC------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007881 262 SIQDAEIAFNKMPE------RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGM 335 (586)
Q Consensus 262 ~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 335 (586)
++.+++..-+.++. ++...+...+.+.........+..++-+-.+ .+ -...-|...+ .+...|.+++|+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~--~~aa~YG~A~-~~~~~~~~d~A~ 326 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RG--GLAAQYGRAL-QTYLAGQYDEAL 326 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--cc--chHHHHHHHH-HHHHhcccchHH
Confidence 44555656666653 4445555555554433333333333222221 11 1233344433 455789999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007881 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 336 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
..++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+..++.....+
T Consensus 327 ~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 327 KLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 999998764 3334566667889999999999999999998 66677 6778888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 414 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|+++..|..|+.+|...|+..++.....++..
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999998887764
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.003 Score=56.98 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=109.1
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q 007881 233 SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAV 312 (586)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~ 312 (586)
.+.+.+.......+......-...|+..|++++|.+.......-.....+ ...+.+..+.+-|.+.+++|.+ .
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--i--- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--I--- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--c---
Confidence 34444444444444344444455678888888888888774333333333 3345667778888888888877 2
Q ss_pred CCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHH
Q 007881 313 PNYVTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVW 386 (586)
Q Consensus 313 pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~ 386 (586)
-+..|.+.|..++.+ .+.+..|.-+|++|.. ...|+..+.+....+....|++++|..++++. ....++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 356677766666543 3567788888888864 35677777777777777778888888887776 222345555
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHhccCCCCc
Q 007881 387 GALLNACRVYGKP-ELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 387 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 417 (586)
..++..-...|.. +--.+...++....|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5555544444544 334456666666666543
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=0.00039 Score=75.00 Aligned_cols=215 Identities=9% Similarity=0.066 Sum_probs=144.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 007881 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL-SACARIAGLELGRSVHAVAVKACVEGNIFVGSAL 253 (586)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 253 (586)
.+...|..|+..|...+++++|.++.+...+. .|+...+-... ..+.+.++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35678899999999999999999999866663 56654433222 244555555444433 23
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCH
Q 007881 254 VDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAV 331 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~ 331 (586)
++...+..++.-...+...|.+ .+-.++-.+..+|-+.|+.++|.++|+++.+ .. +-|....|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--AD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cC-cccHHHHHHHHHHHHHh-hH
Confidence 3333333344333333333332 2334677788888888999999999999888 33 23577788888888888 88
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C---------------------CCCCHHHHHHH
Q 007881 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P---------------------MRPTISVWGAL 389 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------------------~~p~~~~~~~l 389 (586)
++|.+++..++.. |....++.++.+++.++ . ..--+.++--+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 8888888877653 33334444444444444 1 11223445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 390 LNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 577888899999999999999999999888888888776
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=7.8e-06 Score=49.81 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 007881 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEP 210 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 210 (586)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888887
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00016 Score=71.34 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007881 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
....+|+..+...++++.|.++|+++.+.+...+..++..+...++-.+|++++++..+ .. +-|...+..-...|.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--EN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHh
Confidence 34445666777788999999999999887777777788888888899999999999887 22 2255556666677889
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 007881 328 AGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEMPMRP 381 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 381 (586)
.++++.|+.+.+++.. ..|+ ..+|..|...|.+.|++++|+..++.+|..|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999974 4666 5689999999999999999999999987654
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.02 E-value=0.0056 Score=66.37 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcC
Q 007881 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG 292 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 292 (586)
..+-.+..+|.+.|+.+++..+++++++..+. |+.+.|.+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 35555556666666666666666666666633 666666666666666 666666666553 22255555
Q ss_pred CHHHHHHHHHHhhh
Q 007881 293 HADMALSSFEEMTS 306 (586)
Q Consensus 293 ~~~~A~~~~~~m~~ 306 (586)
++.++.++|.++..
T Consensus 184 q~~~~~e~W~k~~~ 197 (906)
T PRK14720 184 QYVGIEEIWSKLVH 197 (906)
T ss_pred cchHHHHHHHHHHh
Confidence 66666666666665
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0033 Score=56.77 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=97.5
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCe
Q 007881 200 FLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-RNL 278 (586)
Q Consensus 200 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 278 (586)
.+.+.......+......-...|...+++++|........ +......=+..+.|..+++-|.+.++.|.+ .+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3334443334443334444455666777777766654411 223333334556677778888888888876 444
Q ss_pred eHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 007881 279 VCWNAIIGGYAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY 354 (586)
Q Consensus 279 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 354 (586)
.+.+.|..++.+ .+...+|.-+|++|-+ ...|+..+.+....++...|++++|..+++....+. ..++.+.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL 244 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETL 244 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHH
Confidence 566666666554 3457788888888865 366888888888888888888888888888877542 2334555
Q ss_pred HHHHHHHHhcCChHH
Q 007881 355 ACVVDLLGRAGLVDR 369 (586)
Q Consensus 355 ~~li~~~~~~g~~~~ 369 (586)
..+|-.-...|...+
T Consensus 245 ~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHhCCChH
Confidence 555555445555433
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.92 E-value=0.00038 Score=58.47 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=86.4
Q ss_pred HHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 007881 300 SFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM- 377 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 377 (586)
.+++... ..|+ ......+...+...|++++|...|+.+... -+.+...+..+...+.+.|++++|...+++.
T Consensus 5 ~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLG----LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHc----CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544 3354 345666777788889999999999888653 2345778888888899999999999988887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007881 378 PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 378 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
...| +...+..+...+...|+++.|...++++.+++|++..
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3334 5677777888899999999999999999999988754
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00061 Score=58.00 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCChH
Q 007881 291 QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~ 368 (586)
.++...+...++.+.+...+-.........+...+...|++++|...|+.+... ...|+ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555511110001122223334455556666666666555543 21111 112223444455555555
Q ss_pred HHHHHHHhC
Q 007881 369 RAYEIIKEM 377 (586)
Q Consensus 369 ~A~~~~~~m 377 (586)
+|+..++..
T Consensus 103 ~Al~~L~~~ 111 (145)
T PF09976_consen 103 EALATLQQI 111 (145)
T ss_pred HHHHHHHhc
Confidence 555555443
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.7e-05 Score=47.08 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 007881 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGG 107 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 107 (586)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=0.00091 Score=56.91 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALL 390 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll 390 (586)
.|..++.++ ..++...+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 47888999999999987633221 1234445668889999999999999998 222443 3455567
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
..+...|++++|+..++.. ...+..+..+...+.+|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7789999999999999763 233445677889999999999999999999864
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.81 E-value=0.046 Score=54.52 Aligned_cols=397 Identities=10% Similarity=0.069 Sum_probs=231.1
Q ss_pred CCChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 007881 42 IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFL 118 (586)
Q Consensus 42 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 118 (586)
+-|..+|+.||.-+... .+++++..++++.. | ....|..-|..-....+++....+|.+-+..-+. ..-|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 67899999999988766 99999999999876 3 4457999999999999999999999998765443 44444444
Q ss_pred HHHhcC-CChHH----HHHHHHHH-HHhCCCCC-hhHHHHHHHH---------HHhcCChHHHHHHHhcCCCC-------
Q 007881 119 NACSDC-SLLQL----GRQLHGFL-VRSGFDGN-VSVCNGLVDF---------YGKCNEVGLAKVVFDGIIDK------- 175 (586)
Q Consensus 119 ~~~~~~-~~~~~----a~~~~~~~-~~~g~~~~-~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~------- 175 (586)
.-..+. ++... ..+.|+.. .+.|+++- ...|+..+.. |....+++..+++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 433222 33333 23344443 34565553 3356665553 33445677788888887542
Q ss_pred ---ChhhHHHHHHHHH-------HcCChHHHHHHHHHHHH--CCCCCCHhH---------------HHHHHHHHhcccCc
Q 007881 176 ---NDVSWCSMLVVYV-------QNYEEENGCQMFLTARR--EGVEPKDFM---------------ISSVLSACARIAGL 228 (586)
Q Consensus 176 ---~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~~~~ 228 (586)
|-..|..=|+... +...+..|.+++++... .|+.-+..+ |...|.- -+.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCc
Confidence 2222322222211 23345567777776643 354433322 2222211 111111
Q ss_pred H--H-------HHHHHHH-HHHhCCCCchhHHHH-----HHHHHHhcCCH-------HHHHHHHhhCCC----CCeeHHH
Q 007881 229 E--L-------GRSVHAV-AVKACVEGNIFVGSA-----LVDMYGKCGSI-------QDAEIAFNKMPE----RNLVCWN 282 (586)
Q Consensus 229 ~--~-------a~~~~~~-~~~~~~~~~~~~~~~-----li~~~~~~g~~-------~~A~~~~~~m~~----~~~~~~~ 282 (586)
. . ..-++++ +.-.+..|++....+ .-+.+...|+. +++..+++.... .+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 0011111 112334443332111 12233334443 333444443322 1222222
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 007881 283 AIIGGYA---HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVV 358 (586)
Q Consensus 283 ~li~~~~---~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 358 (586)
.+..--- ..+..+.....+++.... ..+.| ..+|..+++.--+..-++.|+.+|.++.+. +..+ ++.++++++
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKI-EDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALM 409 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhh-hccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHH
Confidence 2221111 111245556666666652 22333 346777788888888899999999999766 5555 677888888
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcc--CCC-CchhHHHHHHHHhhcCCh
Q 007881 359 DLLGRAGLVDRAYEIIKEM-PMRPTISV-WGALLNACRVYGKPELGRIAADNLFKL--DPN-DSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~ 433 (586)
.-|| .++.+-|.++|+-- .--+|... -...+.-+...++-..+..+|++++.. .|+ ....|..++.--+.-|+.
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 8665 56778889988764 22244433 455666677788888899999998886 332 346788888877888999
Q ss_pred HHHHHHHHHHHhC
Q 007881 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
+.+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887653
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.6e-05 Score=46.26 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 007881 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGV 208 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 208 (586)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00029 Score=54.39 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888888776 3333 33566677777788888888888888888888887778888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 007881 432 RWEEADLVRKEMKD 445 (586)
Q Consensus 432 ~~~~a~~~~~~m~~ 445 (586)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00062 Score=55.58 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=48.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 007881 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNAC 393 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 393 (586)
.+...+...|++++|...|..+...+.-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 344444555555555555555543211101 1223444555555555555555555554 11222 33455555555
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCch
Q 007881 394 RVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
...|+.++|...++++.+..|++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666665543
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0074 Score=54.17 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHH---HHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAI---IGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
|.-++-+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++++...+ .+ +.|.+++..=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cC-cchhHHHHHHHHHHH
Confidence 34444455567777777777776654212222111 1113446888999999999887 43 345677776666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHH
Q 007881 327 RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY---GKPEL 401 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~ 401 (586)
..|+.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++ -..| ++..+..+...+... .+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788888888776 45778889999999999999999999989887 3344 444455555554333 36778
Q ss_pred HHHHHHHHhccCCCCchhHH
Q 007881 402 GRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~ 421 (586)
|...+.+.+++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 89999999999986554443
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=4.3e-05 Score=58.11 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=39.9
Q ss_pred CChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 007881 365 GLVDRAYEIIKEM-PMRP---TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 365 g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444555554444 1111 233444455555555566666555555 4444544455555566666667777666666
Q ss_pred HH
Q 007881 441 KE 442 (586)
Q Consensus 441 ~~ 442 (586)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00058 Score=55.74 Aligned_cols=96 Identities=19% Similarity=0.063 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHH
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLL 423 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 423 (586)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999988 33343 3466778888999999999999999999988775 4578889
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCC
Q 007881 424 SNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.65 E-value=0.00017 Score=52.33 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG-RWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 445 (586)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999998765
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.0012 Score=65.34 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=59.3
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
...+...|++++|+..|.++++. .| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34455566777777777666542 33 3455556666666666666666666665 3333 34455666666666666
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHH
Q 007881 399 PELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
+++|+..++++++++|+++.....+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6666666666666666665554444
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0095 Score=53.48 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH-HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV-LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
|..++-+....|+.+.|...++++.. . + |...-...+ ..-+-..|.+++|+++++.+..+ -+.|..+|-.-+-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~--~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRD--R-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH--h-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHH
Confidence 33445556678999999999999887 2 3 543322211 11244579999999999999875 2445777777777
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC---ChH
Q 007881 360 LLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG---RWE 434 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 434 (586)
..-..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++-..|.++..+..++..+.-.| +.+
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 777888888888877776 455799999999999999999999999999999999999999999999877655 566
Q ss_pred HHHHHHHHHHhCC
Q 007881 435 EADLVRKEMKDVG 447 (586)
Q Consensus 435 ~a~~~~~~m~~~g 447 (586)
-+++++.+..+..
T Consensus 209 ~arkyy~~alkl~ 221 (289)
T KOG3060|consen 209 LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhC
Confidence 7888888877643
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.0026 Score=65.92 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+...|.++.......|++++|...++++.+++| +...|..++..|...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555445556666666666666666666 355666666666666666666666666554
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.0003 Score=50.29 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778889999999999999999998889999999999999999999999888653
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0016 Score=57.29 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
..+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555556666667777776666665 22222 35677777778888888888888888888888888788778888
Q ss_pred HhhcCC
Q 007881 427 FAATGR 432 (586)
Q Consensus 427 ~~~~g~ 432 (586)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777666
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0015 Score=57.26 Aligned_cols=94 Identities=11% Similarity=-0.107 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
...|..+...+...|++++|+..|++. ...|+ ..+|..+...+...|++++|+..++++.++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 556667777777888889888888877 33332 3478888888999999999999999999999988888888888
Q ss_pred HHh-------hcCChHHHHHHHHHHH
Q 007881 426 MFA-------ATGRWEEADLVRKEMK 444 (586)
Q Consensus 426 ~~~-------~~g~~~~a~~~~~~m~ 444 (586)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 7888887776666543
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.004 Score=59.69 Aligned_cols=266 Identities=14% Similarity=0.044 Sum_probs=157.3
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcH
Q 007881 154 DFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLE 229 (586)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~ 229 (586)
..+.+..++.+|+..+...++ .+..-|..-...+...|++++|+--.+.-.+ ++|.. ....-.-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 445556666666666654322 2344555566666666666666655443332 22221 12223333333334444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHH-HHHHHhcCCHHHHHHHHHH
Q 007881 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAI-IGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 303 (586)
+|.+.+. +...+ ....|...++.... |...+|-.+ ..++.-.|+.++|.+.-..
T Consensus 135 ~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 4443333 00000 11122222222221 223344433 2345667888888887766
Q ss_pred hhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH-------------HHHHHhcCChHHH
Q 007881 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV-------------VDLLGRAGLVDRA 370 (586)
Q Consensus 304 m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------------i~~~~~~g~~~~A 370 (586)
..+. . .-+......-..++...++.+.|...|++.+ .+.|+...-..+ .+...+.|++.+|
T Consensus 195 ilkl--d-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--D-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--c-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 6662 1 0122222222234456678888888888775 456653322111 2345678999999
Q ss_pred HHHHHhC-CCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 371 YEIIKEM-PMR-----PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 371 ~~~~~~m-~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+.+.+. .+. |+...|.....+..+.|+.++|+.-.+++.+++|.-...+..-++.+...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 444 4556677777778889999999999999999999888888888999999999999999999877
Q ss_pred hCC
Q 007881 445 DVG 447 (586)
Q Consensus 445 ~~g 447 (586)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 643
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.12 Score=50.07 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=64.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007881 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
|.-+...|+...|.++-.+..-|+-.-|-..+.+|+..+++++-.++... .+ .++-|-.++.+|.+.|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-------sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-KK-------SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-------CCCChHHHHHHHHHCCCHHH
Confidence 44455567777777777666667777777777777777777666554322 11 23556666777777777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007881 334 GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
|..+...+ + +..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666542 1 13345667777777777655443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0056 Score=53.81 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=76.1
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHH
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHY 354 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 354 (586)
...+..+...+...|++++|...|++..+ ....|+ ...+..+...+.+.|++++|...+.+.... .| +...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALK--LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHH
Confidence 34556666666677777777777777765 221111 345666666777777777777777766542 33 24445
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007881 355 ACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
..+...|...|+...+..-++.. ...+++|.+.++++.+.+|++ +..+...+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55555666666555444322211 112577888888888888876 4445555554443
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.44 E-value=0.002 Score=49.58 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
|..+...+...|++++|...+++..+ .. +.+...+..+...+...|++++|...|+..... .+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHH
Confidence 44455555566666666666666555 21 112244444555555555555555555554321 11122334444444
Q ss_pred HHhcCChHHHHHHHHh
Q 007881 361 LGRAGLVDRAYEIIKE 376 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~ 376 (586)
+...|++++|...+.+
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444433
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.11 Score=53.36 Aligned_cols=314 Identities=13% Similarity=0.095 Sum_probs=157.1
Q ss_pred cCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHH
Q 007881 58 TGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPD----LITFCAFLNACSDCSLLQLGRQL 133 (586)
Q Consensus 58 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 133 (586)
.|++++|.+++-.|.++|.. |..+.+.|++-...++++. -|-..| ...++.+...++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999888888877753 5566667777666655542 111111 23566666666666667777666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh
Q 007881 134 HGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF 213 (586)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 213 (586)
+..-.. ....+.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+- + .|
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p--- 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP--- 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc---
Confidence 654321 123556666666666666665555543 334556677777888888887766332 1 12
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHhCCC-----------CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---Cee
Q 007881 214 MISSVLSACARIAGLELGRSVHAVAVKACVE-----------GNIFVGSALVDMYGKCGSIQDAEIAFNKMPER---NLV 279 (586)
Q Consensus 214 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 279 (586)
...+..|...++|.+|.++-+...-..+. .+..+. --|..+-+.|+.-+|-+++.+|.+. .-+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~ 958 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYV 958 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccC
Confidence 23455666677776666554322110000 000111 1245566677766666666666531 111
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007881 280 CWNAIIGGYA----HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 280 ~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
.|..+=..|. -..+..++++-.++... .|...|... +...|-..++-++.+..-+ -....++.
T Consensus 959 p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~--~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFm 1025 (1189)
T KOG2041|consen 959 PYLRLKKLYVLGALLVENHRQTIKELRKIDK--HGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFM 1025 (1189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--cCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHH
Confidence 1111111111 11122233333333333 332222111 1122333333333332211 12345556
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM----PMRPTISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
.|.+--...|..+.|+..--.+ .+-|...+|..|.-+-+....+.---+.|-++...
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 6666666778888877654333 23356666766655544444444444444444443
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0018 Score=59.65 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=74.5
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007881 325 CSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~ 401 (586)
..+.+++++|+..|..++ .+.|+ .+.|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456788888888888876 34554 566667778888888888888777766 55554 4678888888999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHH
Q 007881 402 GRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
|++.|+++++++|++......|-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999999988755544443
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0022 Score=49.83 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccc--------CcHHHHHHHHHHHHhCCCCchhHH
Q 007881 180 WCSMLVVYVQNYEEENGCQMFLTARREGV-EPKDFMISSVLSACARIA--------GLELGRSVHAVAVKACVEGNIFVG 250 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 250 (586)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677777999999999999999999 999999999999887653 344567788999999999999999
Q ss_pred HHHHHHHHh
Q 007881 251 SALVDMYGK 259 (586)
Q Consensus 251 ~~li~~~~~ 259 (586)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.034 Score=56.50 Aligned_cols=231 Identities=14% Similarity=0.097 Sum_probs=117.6
Q ss_pred HHHHHHHHhcCCChHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 007881 114 FCAFLNACSDCSLLQLGR--QLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY 191 (586)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 191 (586)
++..=.+|.+.++..--+ .-++.+.+.|-.|+... +...++-.|++.+|.++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 344444555555443322 22445666776676554 44556778888888888754 56
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 007881 192 EEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFN 271 (586)
Q Consensus 192 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 271 (586)
.-..|+++|..|+--. ...-+...|..++-..+.+.-.+.. -++.--.+...++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 6666777776654211 1112223344333333332211110 00111123345556677777775543
Q ss_pred hCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh
Q 007881 272 KMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA 351 (586)
Q Consensus 272 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 351 (586)
..+|-.+-+.++-+++-. .+..+...+..-+.+...+..|-++|..|-.
T Consensus 727 -----------------~d~gW~d~lidI~rkld~------~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK------AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch------hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 334445555555544433 2334444444445555666667777766621
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEMP-MRPTISV-----------WGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-----------~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
...++++-...+++.+|..+-++.| ..||+.. |.-.-.+|.+.|+..+|.++++++..
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1345666677777777777777763 3344311 11122344555566666666666544
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.13 Score=49.79 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACR 394 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 394 (586)
..+.+..+.-|...|....|.++-.+. .+ |+...|...+.+|+..++|++-.++... +-.+.-|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345666677788889988888876544 44 8899999999999999999998887654 334578999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
..|+..+|..+..++ .+..-..+|.+.|+|.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999888772 12455678899999999988755443
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.074 Score=50.95 Aligned_cols=99 Identities=7% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----Hh-HHHHHHHHHhcccCcHHHHHHHHHHHHhC--CCC--chhH
Q 007881 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPK-----DF-MISSVLSACARIAGLELGRSVHAVAVKAC--VEG--NIFV 249 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~ 249 (586)
+..+...+.+.|++++|+++|++....-...+ .. .+...+-++...|+...|...++...... +.. ...+
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34456667777778888877777765432211 11 12222334444566666666666655432 211 1334
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhhCCCCCe
Q 007881 250 GSALVDMYGK--CGSIQDAEIAFNKMPERNL 278 (586)
Q Consensus 250 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~ 278 (586)
...|+.+|-. ...++.|..-|+.+.+.|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 4455555543 2346666666666655443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.38 E-value=0.0037 Score=61.98 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=82.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 007881 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLL 361 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 361 (586)
....+...|++++|++.|++.++ . .| +...|..+..+|.+.|++++|+..++.+.. +.| +...|..+..+|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--L--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHH
Confidence 34556788999999999999998 3 34 467888888999999999999999999974 355 477888999999
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 007881 362 GRAGLVDRAYEIIKEM-PMRPTISVWGALLNA 392 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 392 (586)
...|++++|+..|++. .+.|+.......+..
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999987 566665555544443
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.37 E-value=0.00064 Score=51.55 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHH
Q 007881 291 QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 369 (586)
.|+++.|+.+|+++.+.... .|+...+..+..++.+.|++++|..+++.. ...|+ ......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 46677777777777662110 113334444666777777777777777662 12222 2333344666667777777
Q ss_pred HHHHHHh
Q 007881 370 AYEIIKE 376 (586)
Q Consensus 370 A~~~~~~ 376 (586)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766654
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.0033 Score=48.90 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 007881 80 NAYISNAVLGGRPKNAIDAFINLRRTGG-EPDLITFCAFLNACSDCS--------LLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+.....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 899999999999987653 2445678899999999999999999
Q ss_pred HHHHHHHh
Q 007881 151 GLVDFYGK 158 (586)
Q Consensus 151 ~ll~~~~~ 158 (586)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.04 Score=47.11 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHH
Q 007881 311 AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI-KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP---TISV 385 (586)
Q Consensus 311 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 385 (586)
+.|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...+++. ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 457777777888999999999999999998864 54 456777788888999999999999999887 2112 2223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 386 WGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.-.+...+...|+++.|+..|+.+....|. +..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455667788999999999999999998875 45556667778999998888765555543
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.0086 Score=50.57 Aligned_cols=88 Identities=11% Similarity=-0.015 Sum_probs=75.5
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007881 358 VDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
.--+...|++++|..+|+-+ -.. -+..-|..|..+|...++++.|+..+..+..++++|+..+...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33456789999999999887 222 2455678888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007881 436 ADLVRKEMKD 445 (586)
Q Consensus 436 a~~~~~~m~~ 445 (586)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.26 E-value=0.0029 Score=62.91 Aligned_cols=119 Identities=10% Similarity=-0.021 Sum_probs=88.0
Q ss_pred CCCChhhhHHHHHHHHhcCCchHHHHHhccCCC-C-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhH
Q 007881 41 QIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE-R-----NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF 114 (586)
Q Consensus 41 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 114 (586)
.+.+......+++......+++++..++-+... | -..|..++|+.|.+.|..++++.+++.=...|+-||.+|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 345555666677777777777777777665543 2 1234568888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 007881 115 CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC 159 (586)
Q Consensus 115 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 159 (586)
+.|+..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887776666666666666666555
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.0005 Score=49.68 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=42.8
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
...|++++|+..++++.+..|++......++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888877653
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0013 Score=60.56 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=76.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 007881 359 DLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 436 (586)
+-+.+.+++++|+..|.+. .+.| |.+-|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999987 6666 4555666777799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007881 437 DLVRKEMKD 445 (586)
Q Consensus 437 ~~~~~~m~~ 445 (586)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999988765
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.014 Score=55.68 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=94.3
Q ss_pred eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007881 279 VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA-CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
.+|-.++...-+.+..+.|..+|.+..+ .+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 3577777777777778888888888876 32 1223333333333 333566777999999988754 4566778888
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 358 VDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
++.+.+.|+.+.|..+|++. ..-|.. ..|...+.-=.+.|+.+....+.+++.+.-|.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999887 222333 4899999988899999999999999988877743
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.028 Score=53.90 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=49.6
Q ss_pred Hhhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC---CC-----CCHH-HHHHH
Q 007881 324 ACSRA-GAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEMP---MR-----PTIS-VWGAL 389 (586)
Q Consensus 324 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~l 389 (586)
.|-.. |++++|++.|+....-+..... ...+..+...+.+.|++++|.++|++.. .. .+.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5666666666655443221111 3345556677777888888888877651 11 1111 12223
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 390 LNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+-.+...|++..|...+++....+|.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33455567888888888888877764
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.18 E-value=0.0071 Score=60.17 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=72.0
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhH
Q 007881 107 GEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG--FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID----KNDVSW 180 (586)
Q Consensus 107 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 180 (586)
.+.+...+..+++.+....+++.++.++-...... ...-..|..++|+.|.+.|..+.+..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 44466677777777777777777777766655442 112233445666666666666666666654322 566666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007881 181 CSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI 225 (586)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (586)
|.+|..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666655555666666555555544
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0012 Score=47.08 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=44.1
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 357 VVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345667778888888888777 4445 456677777778888888888888888888888763
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.17 E-value=0.0015 Score=47.94 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=50.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 390 LNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...+...++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3467788999999999999999999999999999999999999999999999988643
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.0059 Score=58.29 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR-AGLVDRAYEIIKEM--PMRPTISVWGALLNA 392 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 392 (586)
.+|..++...-+.+..+.|+.+|..+.+.... +..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888899999999999999999753222 34555555555344 46666699999987 344577889999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 393 CRVYGKPELGRIAADNLFKLDPNDS---GNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...++.+.|..+|++.+..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999766543 57888888888999999999999998764
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.023 Score=58.97 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=104.1
Q ss_pred CCCeeHHHHHHHHHHhc--CC---HHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhcc--------CCHHHHHHHHHH
Q 007881 275 ERNLVCWNAIIGGYAHQ--GH---ADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRA--------GAVEKGMKIFYS 340 (586)
Q Consensus 275 ~~~~~~~~~li~~~~~~--g~---~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~ 340 (586)
..|..+|...+.+.... +. ..+|..+|++..+ ..|| ...|..+..++... .++..+.+....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 36788999999986543 33 6799999999998 4476 45566554444322 123344444444
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 341 MTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 341 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
.........+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3221123345577887777777789999999999998 777898899999999999999999999999999999998753
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.09 E-value=0.3 Score=46.99 Aligned_cols=302 Identities=13% Similarity=0.045 Sum_probs=180.9
Q ss_pred CchHHHHHhccCCCCCcccHHHHHHHHHc--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh--cCCChHHHHHHHH
Q 007881 60 LKDDADKMFDEMPERNLATWNAYISNAVL--GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS--DCSLLQLGRQLHG 135 (586)
Q Consensus 60 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~ 135 (586)
....+.+.|..-+. | .-|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..+|.+-. -.|+.+.|++-|+
T Consensus 68 sP~t~~Ryfr~rKR-d-rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERKR-D-RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHHh-h-hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34445555544332 1 236666666554 46666676665554322 4557777777777644 3489999999999
Q ss_pred HHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CC
Q 007881 136 FLVRSGFDGNVSV--CNGLVDFYGKCNEVGLAKVVFDGIID--K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VE 209 (586)
Q Consensus 136 ~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 209 (586)
.|... |.... ...|.-.--+.|..+.|...-+..-. | -...|.+.+...+..|+|+.|+++++.-+... +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 88743 22211 12222233466888877777665532 2 24567888999999999999999998776543 34
Q ss_pred CCHh--HHHHHHHHHhc---ccCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHH
Q 007881 210 PKDF--MISSVLSACAR---IAGLELGRSVHAVAVKACVEGNIFV-GSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCW 281 (586)
Q Consensus 210 p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~ 281 (586)
++.. .-..++.+-+. ..+...|+..-.+..+. .||..- --.-...|.+.|++.++-.+++.+-+ |....|
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 4443 22334433322 12445555555555543 333221 12235678888999999999888865 444333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
. +-.+.+.| |-++.-+++..+. ..++|| ..+...+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 300 ~--lY~~ar~g--dta~dRlkRa~~L-~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 300 L--LYVRARSG--DTALDRLKRAKKL-ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred H--HHHHhcCC--CcHHHHHHHHHHH-HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 2 22234444 3455555544443 335565 4566677777788888888777666554 457888888777776
Q ss_pred HHh-cCChHHHHHHHHhC
Q 007881 361 LGR-AGLVDRAYEIIKEM 377 (586)
Q Consensus 361 ~~~-~g~~~~A~~~~~~m 377 (586)
-.. .|+-.++...+.+.
T Consensus 372 eeAetGDqg~vR~wlAqa 389 (531)
T COG3898 372 EEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhhccCchHHHHHHHHHH
Confidence 543 48888887777766
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0062 Score=56.47 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=81.0
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCchhHHH
Q 007881 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVY---GKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
+-|...|-.|...|.+.|+.+.|..-|.+. .+. ++...+..+..++... ....++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445788888888888888888888888876 333 3455666666664332 24568899999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 423 LSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
|+..+...|++.+|...++.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
No 187
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.54 Score=49.20 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007881 254 VDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 254 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
+.-+...|+..+|.++-.+.+-||-..|--=+.+++..+++++-+++-+.+.. +.-|.....+|.+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--------PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--------PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--------CCCchhHHHHHHhcccHHH
Confidence 33444566666676666666666666666666666666666665555444322 2334455666667777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007881 334 GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
|.+++.... |.. -.+.+|.+.|++.+|.++-
T Consensus 763 A~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 763 AKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 766665441 111 3456666666666665543
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0012 Score=47.60 Aligned_cols=60 Identities=15% Similarity=0.304 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 007881 327 RAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGAL 389 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 389 (586)
..|++++|+.+|+.+... .| +...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777776543 33 4555566667777777777777777666 344554444443
No 189
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.026 Score=47.53 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007881 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.-.+..-+...|++++|.++|+....- .|.. .-|-.+..+|-..|++++|...|.......+. |+..+-.+..+|.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 334444455566666666666655542 2322 23333444444556666666666666555543 4555555556666
Q ss_pred hcCCHHHHHHHHhh
Q 007881 259 KCGSIQDAEIAFNK 272 (586)
Q Consensus 259 ~~g~~~~A~~~~~~ 272 (586)
+.|+.+.|++.|+.
T Consensus 115 ~lG~~~~A~~aF~~ 128 (157)
T PRK15363 115 ACDNVCYAIKALKA 128 (157)
T ss_pred HcCCHHHHHHHHHH
Confidence 66666666666554
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.01 E-value=0.084 Score=51.55 Aligned_cols=160 Identities=17% Similarity=0.089 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-Ce------eHHHHHHHHHHh---cCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007881 252 ALVDMYGKCGSIQDAEIAFNKMPER-NL------VCWNAIIGGYAH---QGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~~-~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
.++-.|-...+++...++.+.+... +. ..--...-++-+ .|+.++|++++..+.. ..-.++..||..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~--~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE--SDENPDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh--ccCCCChHHHHHH
Confidence 4445678888888888888888752 11 111123344555 7888999999888665 3445677777776
Q ss_pred HHHhh---------ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH----HHHHH---HhC-------C
Q 007881 322 LSACS---------RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR----AYEII---KEM-------P 378 (586)
Q Consensus 322 l~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~m-------~ 378 (586)
...|- .....++|+..|.+. +.+.|+..+--.++..+...|...+ ..++- ..+ .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 65542 223477888887755 4566775554444555555554222 22222 111 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 379 MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 379 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
-..|...+.+++.++.-.|+.+.|.+..+++.++.|+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 22567778899999999999999999999999998774
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.11 Score=44.48 Aligned_cols=98 Identities=16% Similarity=0.025 Sum_probs=53.1
Q ss_pred CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHH
Q 007881 209 EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNA 283 (586)
Q Consensus 209 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 283 (586)
.|+...-..+..+....|+..+|...|.+...--+..|..+.-.+.++....+++..|...++++-+ .....--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555545555556666666666666666655544444555555555555556666666655555432 12223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 007881 284 IIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+...|.-.|++.+|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44455555555555555555555
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.95 E-value=0.0071 Score=53.32 Aligned_cols=97 Identities=13% Similarity=0.317 Sum_probs=69.3
Q ss_pred HHHHhhC--CCCCeeHHHHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC----------
Q 007881 267 EIAFNKM--PERNLVCWNAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG---------- 329 (586)
Q Consensus 267 ~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g---------- 329 (586)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+ -|+.-|..+|+.||..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e--fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE--FGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH--cCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3455554 346677777777777643 667777777888888 888888899999988776532
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007881 330 ------AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 330 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
+-+-|++++++|. ++|+-||.+++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 3466778888884 45888888888888887766553
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.66 Score=48.58 Aligned_cols=319 Identities=11% Similarity=0.029 Sum_probs=175.5
Q ss_pred CCCCCChhhHH-----HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCC--
Q 007881 105 TGGEPDLITFC-----AFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE---VGLAKVVFDGIID-- 174 (586)
Q Consensus 105 ~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~-- 174 (586)
-|+..+..-|. .+++-+...+.+..|.++-..+-..-.. ...++.....-+.+..+ -+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 44554444443 3444455566677777765554321111 14566666666666532 2223333344443
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC--------
Q 007881 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE----PKDFMISSVLSACARIAGLELGRSVHAVAVKAC-------- 242 (586)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------- 242 (586)
...++|..+..--.+.|+++-|..+++.=...+-+ .+..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777766432211100 112234445555666677666666554443321
Q ss_pred ---CCCchhHHHHHHH---------HHHhcCCHHHHHHHHh--hCC-----CCCeeHHHHHHHHHHhcCC---HHH----
Q 007881 243 ---VEGNIFVGSALVD---------MYGKCGSIQDAEIAFN--KMP-----ERNLVCWNAIIGGYAHQGH---ADM---- 296 (586)
Q Consensus 243 ---~~~~~~~~~~li~---------~~~~~g~~~~A~~~~~--~m~-----~~~~~~~~~li~~~~~~g~---~~~---- 296 (586)
.+.....|.-++. .|-...+. .+...|. ... ++-..........+++... .++
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1111122221111 11111111 1111111 100 1111122223334444332 112
Q ss_pred ---HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 007881 297 ---ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEI 373 (586)
Q Consensus 297 ---A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 373 (586)
-+.+.+.+..+ .|..-...|.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++
T Consensus 664 ~~kLl~lQ~~Le~q-~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQ-FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHH-hccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 22333333332 3333445566666777888899999998877663 58888999999999999999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 374 IKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 374 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
-+.+. .+.-|.-+..+|.+.|+.++|...+-+...+. -...+|.+.|++.+|.++--+
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 87763 24567788899999999999988877653321 456778899999988876443
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.93 E-value=0.33 Score=45.16 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=36.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-HH---HHHHHHHhcccCcHHHHHHHHHHHHhCCC
Q 007881 182 SMLVVYVQNYEEENGCQMFLTARREGVEPKDF-MI---SSVLSACARIAGLELGRSVHAVAVKACVE 244 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (586)
.....+.+.|++++|.+.|+++...- |+.. .. -.+..++.+.++++.|...+++.++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34455566777777777777776642 3222 11 23445566677777777777776665544
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.018 Score=46.57 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CchhHHHHHHHHhhcC
Q 007881 360 LLGRAGLVDRAYEIIKEM---PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPN---DSGNHVLLSNMFAATG 431 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 431 (586)
++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.....|+ +......++.++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555544 21111 123444555566666666666666666665555 4445555555666666
Q ss_pred ChHHHHHHHHHH
Q 007881 432 RWEEADLVRKEM 443 (586)
Q Consensus 432 ~~~~a~~~~~~m 443 (586)
+.++|.+.+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 666666665443
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.86 E-value=0.0092 Score=57.18 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSM---TLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMR-PTI 383 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~-p~~ 383 (586)
..|..|.+.|.-.|++++|+..++.- .+.+|-... ...++.+.+++.-.|+++.|.+.++.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45667777777788999998877642 233443322 456778888888899999998888764 211 344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----C--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 384 SVWGALLNACRVYGKPELGRIAADNLFKL----D--PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
-+..+|.+.|.....++.|+..+.+-+.+ + .....++..|+++|...|..+.|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56778888888888899998887765543 2 23457888999999999999999888776543
No 197
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.85 E-value=0.021 Score=49.98 Aligned_cols=80 Identities=9% Similarity=-0.095 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007881 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPD--LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++.+.+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3455566666667777777777777765432221 2356666666777777777777777766552 223344555555
Q ss_pred HHH
Q 007881 155 FYG 157 (586)
Q Consensus 155 ~~~ 157 (586)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.81 E-value=0.00096 Score=40.23 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.6
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007881 406 ADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 199
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.80 E-value=0.2 Score=40.36 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=89.7
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007881 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
+.-.|..++..++..+... + .+..-+|.++.-...+-+-+-..+.++.+-+-+.+. .+|++
T Consensus 12 ~ildG~V~qGveii~k~v~--S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~Nl 72 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN--S---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNL 72 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH--H---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-T
T ss_pred HHHhchHHHHHHHHHHHcC--c---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcch
Confidence 4456888888888888877 2 356667777766555666666666676664433222 34455
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.....-+-.++ .+..-....+.....+|+-+.-.++...+.+.+..++....-++++|.+.|+..++.+++++.-++|
T Consensus 73 KrVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 73 KRVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 55444444443 2344556677888899999988889888887666678899999999999999999999999999999
Q ss_pred Cc
Q 007881 448 IK 449 (586)
Q Consensus 448 ~~ 449 (586)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.79 E-value=0.55 Score=45.28 Aligned_cols=242 Identities=16% Similarity=0.141 Sum_probs=155.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHH----HHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007881 188 VQNYEEENGCQMFLTARREGVEPKDFMIS----SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
.-.|++++|.+-|+.|.. |..|-. .+.-..-+.|+.+.|.++-+.....-+. -.....+.+...+..|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDW 204 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCCh
Confidence 345666667666766654 222222 2222234567777777777766665444 345667778888888888
Q ss_pred HHHHHHHhhCCC-----CCee--HHHHHHHHHHh---cCCHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHhhccCCHH
Q 007881 264 QDAEIAFNKMPE-----RNLV--CWNAIIGGYAH---QGHADMALSSFEEMTSMRCEAVPNYVT-LVCVLSACSRAGAVE 332 (586)
Q Consensus 264 ~~A~~~~~~m~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~g~~pd~~t-~~~ll~a~~~~g~~~ 332 (586)
+.|+++.+.-.. +++. .--.|+.+-+. .-+...|...-.+..+ +.||.+. -.....++.+.|++.
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK----LAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchh
Confidence 888888876542 4332 12223332221 2345566666665555 5566432 334457889999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007881 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRP-TISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
++-.+++.+-+ ..|.+..+...+ +.+.|+. +++-+++. .++| +..+..++..+-...|++..|..-.+
T Consensus 281 Kg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 281 KGSKILETAWK---AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred hhhhHHHHHHh---cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999864 477776655444 3355543 32222222 3445 45666777788888999999999999
Q ss_pred HHhccCCCCchhHHHHHHHHh-hcCChHHHHHHHHHHHhCC
Q 007881 408 NLFKLDPNDSGNHVLLSNMFA-ATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~g 447 (586)
.+....|. ...|.+|+.+-. ..|+-.+++..+-+..+..
T Consensus 354 aa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 354 AAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 99999987 467888888765 4599999998888776643
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.071 Score=48.26 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=128.2
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH-hcCCC-hHHHH-HHHHHHHHhCCCCChhHHHHH
Q 007881 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC-SDCSL-LQLGR-QLHGFLVRSGFDGNVSVCNGL 152 (586)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~~a~-~~~~~~~~~g~~~~~~~~~~l 152 (586)
...|+.-+..+++....++|..-+...-+-. .||.+ |...=..+ .+.|. +.-+. -+|.++.+. .| .-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lg--npqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LG--NPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cC--CcHHHH
Confidence 3456666777777777777766655543321 11210 00000000 11222 12222 233344332 11 235667
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC--Chh--------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDK--NDV--------SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 222 (586)
.+.|.-..-+++-...|+.-..+ .+. ..+.++..+.-.|.+.-.+.++++..+..-+.++.....+.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 76666666666666666543322 222 33456666666777777777777777765555666666677777
Q ss_pred hcccCcHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCH
Q 007881 223 ARIAGLELGRSVHAVAVKACVEGNIFVGS-----ALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHA 294 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 294 (586)
.+.|+.+.|...++...+..-..|....+ .....|.-.+++..|...|+++.. .|++.-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 77788888888777666543333333333 333345556677777777777664 3444445444444445777
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHH
Q 007881 295 DMALSSFEEMTSMRCEAVPNYVTLV 319 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~t~~ 319 (586)
.+|++..+.|.. ..|...+-+
T Consensus 303 ~DAiK~~e~~~~----~~P~~~l~e 323 (366)
T KOG2796|consen 303 KDALKQLEAMVQ----QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHhc----cCCccchhh
Confidence 777777777776 335544444
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.78 E-value=0.0038 Score=45.10 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG-KPELGRIAADNLFKLDP 414 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 414 (586)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666666677777777777777665 3334 4556777777777777 67888888888877776
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.73 E-value=0.02 Score=48.68 Aligned_cols=69 Identities=28% Similarity=0.257 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCccCC
Q 007881 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD-----VGIKKGA 452 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 452 (586)
.+...++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.++++++.. .|+.|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777788899999999999999999999999999999999999999999999998853 4776654
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.72 E-value=0.015 Score=51.39 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=55.7
Q ss_pred CChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc----------------cCcHHHHH
Q 007881 175 KNDVSWCSMLVVYVQ-----NYEEENGCQMFLTARREGVEPKDFMISSVLSACARI----------------AGLELGRS 233 (586)
Q Consensus 175 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 233 (586)
+|..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444445555544443 244444555566666667766777777776665432 23456777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007881 234 VHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888887776654
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.72 E-value=0.014 Score=54.71 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHHHH
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLLSN 425 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 425 (586)
|..-+..+.+.|++++|...|+.+ ...|+. ..+.-+...+...|++++|...|+.+.+..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445555555555554 222221 244455555666666666666666666655543 233334455
Q ss_pred HHhhcCChHHHHHHHHHHHh
Q 007881 426 MFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 426 ~~~~~g~~~~a~~~~~~m~~ 445 (586)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666554
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.71 Score=44.92 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HHhcCCHHHHHHHHHHhhhcc-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 007881 288 YAHQGHADMALSSFEEMTSMR-CEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAG 365 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 365 (586)
..+.|++.+|.+.|.+.+..+ ..+.|+...|.....+..+.|+.++|+.--+... .+.|. ...|..-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 455677777777777665511 1233444555555566666777777776666554 23332 122222223344455
Q ss_pred ChHHHHHHHHhC
Q 007881 366 LVDRAYEIIKEM 377 (586)
Q Consensus 366 ~~~~A~~~~~~m 377 (586)
++++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.66 E-value=0.079 Score=49.29 Aligned_cols=56 Identities=9% Similarity=-0.054 Sum_probs=37.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCh---hh---HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 007881 152 LVDFYGKCNEVGLAKVVFDGIIDKND---VS---WCSMLVVYVQNYEEENGCQMFLTARREG 207 (586)
Q Consensus 152 ll~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 207 (586)
....+.+.|++++|.+.|+.+....+ .. .-.++.+|.+.+++++|...|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34445667888888888877744221 11 1235577788888999998888887753
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.63 E-value=0.0099 Score=58.67 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555566666666655553 444442 23555555555556666666666555554
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.62 E-value=0.049 Score=44.07 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=48.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 007881 183 MLVVYVQNYEEENGCQMFLTARREGVEPKD--FMISSVLSACARIAGLELGRSVHAVAVKACVEG--NIFVGSALVDMYG 258 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 258 (586)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++......+.+ +..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556677777777777777776654432 234445555666666666666666665543221 1111222233444
Q ss_pred hcCCHHHHHHHHhh
Q 007881 259 KCGSIQDAEIAFNK 272 (586)
Q Consensus 259 ~~g~~~~A~~~~~~ 272 (586)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 55555555555443
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.59 E-value=0.03 Score=45.75 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
..++.++|.++++.|+++....+.+..-..|+.. -...+. ...+....|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~-----------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD-----------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc-----------cCCCCCCCCCHHHHHHHHHHHH
Confidence 3456666667777777776666665543211110 000000 1222456788888888888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007881 327 RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLL 361 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 361 (586)
..|++..|+++.+...+.|+++-+...|..|++-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888777777777776543
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=1.2 Score=46.30 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=29.1
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHH
Q 007881 384 SVWGALLNA--CRVYGKPELGRIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 384 ~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
..|.-+|-+ ....|.++.|.+..-.+...+ |+ ...|..|+-+-+....+.-.-+.|
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP-AEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HHHHHHHHHHHhhhhhhhhhHHHH
Confidence 344444444 455678888877665555432 33 456666655444443343333333
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.31 Score=49.91 Aligned_cols=222 Identities=12% Similarity=0.037 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCCCchHHHHHH--HHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007881 13 FPCLFKASSALHIPVTGKQLH--ALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~--~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
++..=++|.+-+++.--+-+. +.+.+.|-.|+... +...++-.|.+.+|.++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 333444555555444333332 23444554455443 33445556677777766643 45
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007881 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
.-..|+++|..|+-- -..+-+...|+.++-+.+.+.-.+. ..+..--.+...++...|+.++|..+.-
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~ 727 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICG 727 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhh
Confidence 555666666665431 1223344455555544443322211 1111111233445555666666655432
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHH
Q 007881 171 GIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG 250 (586)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (586)
.+|=.+-+.++-+++- ..+..+...+..-+-+...+..|.++|..|-..
T Consensus 728 ------------------d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 728 ------------------DHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred ------------------cccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 1222222222222221 122333433333444555666777777665332
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHH
Q 007881 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMAL 298 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 298 (586)
.+++++....+++++|..+-++.++--...|-.-..-++...++++|.
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH
Confidence 246777778888888888888887622222333333344444444443
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.048 Score=52.73 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..++..|..++.+.+++..|+...++.++++|+|.-..+.-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 356777888899999999999999999999999999999999999999999999999999986
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.42 E-value=0.045 Score=51.37 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWG 387 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~ 387 (586)
.|...+....+.|++++|...|+.+.+.+ |+ ...+-.+...|...|++++|...|+.+ ...|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444433345566777777777666542 33 235556666777777777777777666 11122 33455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 388 ALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+...+...|+.+.|...++++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 556667778888888888888888888754
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.63 Score=42.05 Aligned_cols=177 Identities=12% Similarity=0.052 Sum_probs=78.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007881 183 MLVVYVQNYEEENGCQMFLTARREGVE--PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC 260 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (586)
....+.+.|++.+|.+.|+++...-.. --......+..++.+.|+++.|...++..++.-+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344556677777777777777654211 111233445566666777777777776666654432222222222222111
Q ss_pred CCHHHHHHHHhhCCCCC-------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHH
Q 007881 261 GSIQDAEIAFNKMPERN-------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEK 333 (586)
Q Consensus 261 g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 333 (586)
...... + ...+| ...+..++.-|=......+|...+..+... .-. .-..+..-|.+.|.+..
T Consensus 91 ~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-----la~-~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-----LAE-HELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHCTT-HHH
T ss_pred HhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHcccHHH
Confidence 111111 0 01111 112333444444444455554444443320 000 11124455677777777
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHH
Q 007881 334 GMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRA 370 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 370 (586)
|..-++.+++++.-.+. ......++.+|.+.|..+.|
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777766422222 23445566666666666543
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.17 Score=45.89 Aligned_cols=128 Identities=7% Similarity=-0.070 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH-----HHH
Q 007881 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN-----GLV 153 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~ll 153 (586)
-+.++..+.-.|.+.-.+.++.+.++...+-++.-.+.+.+.-.+.||.+.|...|+...+..-..|..+.+ ...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345555666667777777777777776555566666667766677777777777777665443223333333 333
Q ss_pred HHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 007881 154 DFYGKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206 (586)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (586)
..|.-.+++.+|...|++++.. |++.-|.-.-+..-.|+..+|++.+..|+..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455556777777777766543 3444454444555567777777777777663
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.28 E-value=0.0094 Score=38.48 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007881 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
.+|..+..++...|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788889999999999999999999999999888877653
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.28 E-value=1.3 Score=43.69 Aligned_cols=406 Identities=13% Similarity=0.078 Sum_probs=224.8
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCC------hhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHH--HcCC
Q 007881 21 SALHIPVTGKQLHALALKSGQIHD------VFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNA--VLGG 90 (586)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g 90 (586)
-+.+++.++..+|..+.+.- ..+ ....+.++++|... +++.....+....+ | ...|-.|..++ -+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 46789999999999998653 222 23456778888653 34444444433332 3 33455555543 4678
Q ss_pred ChhHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC----CChhHHHHH
Q 007881 91 RPKNAIDAFINLRRT--GGEP------------DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFD----GNVSVCNGL 152 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l 152 (586)
.+.+|++.+....+. +-.| |-.-=+..+.++...|++.+|+.++++++..=++ -+..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999998877654 3222 1112245666788999999999999988765443 688899998
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcC-------------------------------ChHHHHHHHH
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNY-------------------------------EEENGCQMFL 201 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------------------------------~~~~A~~~~~ 201 (586)
+-++++.=-++--. .+...=...|--||..|.+.= +..--++++.
T Consensus 174 vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 174 VLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88877653222111 111111112333333332211 1111122222
Q ss_pred HHHHCCCCCCHhH-HHHHHHHHhcccCcHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 007881 202 TARREGVEPKDFM-ISSVLSACARIAGLELGRSVHAVAVKACVEG----NIFVGSALVDMYGKCGSIQDAEIAFNKMP-- 274 (586)
Q Consensus 202 ~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 274 (586)
.-...-+.|+... ...+...+.+ +.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-+.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2223334454322 2223333322 4455554444444332111 13455666666677788888877766544
Q ss_pred CCCee-------HHHHHHHHHH----hcCCHHHHHHHHHHhhhccCCCCCCHHHH-HHHH---HHhhccCC-HHHHHHHH
Q 007881 275 ERNLV-------CWNAIIGGYA----HQGHADMALSSFEEMTSMRCEAVPNYVTL-VCVL---SACSRAGA-VEKGMKIF 338 (586)
Q Consensus 275 ~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~g~~pd~~t~-~~ll---~a~~~~g~-~~~a~~~~ 338 (586)
+|+.. +-.++-+..+ ..-+...=+.+|+.... .+ .|..-. ..++ .-+-+.|. -++|++++
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs--~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS--YD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--hc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 23322 1111222222 11233344556666655 22 233221 1222 22344455 78889998
Q ss_pred HHhHHhcCCCC-ChHHHHHHH----HHHHhc---C---ChHHHHHHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHH
Q 007881 339 YSMTLKYGIKP-GAEHYACVV----DLLGRA---G---LVDRAYEIIKEMPMRP----TISVWGALLNA--CRVYGKPEL 401 (586)
Q Consensus 339 ~~~~~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~ 401 (586)
+.+.+ +.| |...-|.+. ..|..+ . ++-+-..++++.++.| +...-|.|..| +..+|++.+
T Consensus 404 k~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 404 KLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 88863 333 333333222 122221 1 1222344455555554 34456667766 678999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+...-.=+.+..| ++.+|..++-.+....++++|..++..+
T Consensus 481 c~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 481 CYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 9988888888999 7899999999999999999999999865
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.21 E-value=0.022 Score=41.62 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=47.4
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH
Q 007881 359 DLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 421 (586)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4577788888888888877 4444 4556677777788888899999999998888887665443
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.03 E-value=0.083 Score=43.22 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHh--------------HHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC---
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIFYSM--------------TLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--- 377 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 377 (586)
..++..++.++++.|+++....+.+.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344455555555555555554444332 111234455555555666665566666655555544
Q ss_pred -CCCCCHHHHHHHHHH
Q 007881 378 -PMRPTISVWGALLNA 392 (586)
Q Consensus 378 -~~~p~~~~~~~ll~~ 392 (586)
+++-+...|..|+.=
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333345555555544
No 221
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.93 E-value=3.1 Score=44.77 Aligned_cols=195 Identities=11% Similarity=-0.041 Sum_probs=127.9
Q ss_pred ccHHHHHHHHh--cCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHH
Q 007881 11 FTFPCLFKASS--ALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNA 86 (586)
Q Consensus 11 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 86 (586)
..|..++++++ +.|..++|..+++.....+. .|..+...+-..|...|..++|..+++.... |+......+..+|
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay 120 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY 120 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 34677777754 78899999988887766553 4888999999999999999999999999876 5544444556678
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC-C---------hHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 007881 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCS-L---------LQLGRQLHGFLVRSG-FDGNVSVCNGLVDF 155 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~ 155 (586)
++.+++.+--+.--+|.+. .+-+.+.|-++++...+.- . +..|....+.+++.+ ---+..=.-.-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 8877776543333333332 3335667767766654331 1 234555666665554 11111111222334
Q ss_pred HHhcCChHHHHHHHhc-----CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 007881 156 YGKCNEVGLAKVVFDG-----IIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG 207 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 207 (586)
....|++++|..++.. ....+...-+--+..+...+++.+..++-.++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 5567889999999832 233344455566777888899999988888888876
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.73 E-value=0.018 Score=42.71 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=10.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHH
Q 007881 420 HVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+..++.+|...|++++|.+++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=1.6 Score=39.52 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCCchhHH
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEMP-----M--RPTI-SVWGALLNACRVYGKPELGRIAADNLFKL----DPNDSGNHV 421 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~ 421 (586)
|...-..|.+..++++|-..|.+-. . -|+. ..|-+.|-.+....++..|+..++.-.+. +|.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344455666666666655554431 0 1222 23444444555556777777777775553 356666677
Q ss_pred HHHHHHhhcCChHHHHHHH
Q 007881 422 LLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~ 440 (586)
.|+.+| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777766 557777666554
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.68 E-value=0.022 Score=42.24 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-------P-MRPT-ISVWGALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
..+|+.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|+..+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999999886 2 1133 5678888899999999999999999875
No 225
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.23 Score=46.34 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=48.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc---ccCcHHHHHHHHHHHHhCCCCchhHHHH
Q 007881 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR---IAGLELGRSVHAVAVKACVEGNIFVGSA 252 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (586)
|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++.. ...-.++..+++++++..+. |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 55566666666666666666666666655421 2233333333333321 12344555555555554433 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC
Q 007881 253 LVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~ 274 (586)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4444555555555555555444
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.58 E-value=0.41 Score=43.25 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007881 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 334 (586)
+..-|.+.|.+..|..-++.+++.=.+..-.......++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455577788888888888888772111111123456677777777777644
No 227
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.46 E-value=0.076 Score=51.16 Aligned_cols=257 Identities=12% Similarity=0.045 Sum_probs=148.2
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHH--H--hCC-CCChhHHHHHHHH
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGEPDLI----TFCAFLNACSDCSLLQLGRQLHGFLV--R--SGF-DGNVSVCNGLVDF 155 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~-~~~~~~~~~ll~~ 155 (586)
-+++.|+....+.+|+...+.|.. |.. .|+.|-++|.-.+++++|.+.|..=+ . .|- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 367788888888888888777643 333 34555566666777888887765321 1 110 0012223334444
Q ss_pred HHhcCChHHHHHHHhc-C------CCC--ChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHH--
Q 007881 156 YGKCNEVGLAKVVFDG-I------IDK--NDVSWCSMLVVYVQNYE--------------------EENGCQMFLTAR-- 204 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~-~------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 204 (586)
+--.|.+++|...-.+ + -.+ ....+..+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665433211 1 000 12233345555554443 233444443321
Q ss_pred --HCCC-CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 007881 205 --REGV-EPKDFMISSVLSACARIAGLELGRSVHAVAVK----ACVE-GNIFVGSALVDMYGKCGSIQDAEIAFNKMP-- 274 (586)
Q Consensus 205 --~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 274 (586)
+.|- -.....|..+-..|.-.|+++.|...|+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+.-.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 11223455666666677899999888865433 2211 124567778888889999999998887532
Q ss_pred -----CCC--eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc---CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 275 -----ERN--LVCWNAIIGGYAHQGHADMALSSFEEMTSMR---CEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 275 -----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
++. ..+..+|...|.-..++.+|+.++.+-.... ....-....+-+|..++...|..++|+.+...-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 3355667777877788889988876543310 0112245678889999999999999988766544
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.21 Score=48.43 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
..++..|.-.|.+.+++.+|++.-+.. .. ++|.-....=..+|...|+++.|+..|+++++++|.|..+..-|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346677778889999999999888876 33 3567777777888999999999999999999999999888888887766
Q ss_pred hcCChHHH-HHHHHHHHhC
Q 007881 429 ATGRWEEA-DLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a-~~~~~~m~~~ 446 (586)
+..+..+. .++|..|-.+
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 66555444 7888888754
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.41 E-value=0.11 Score=51.60 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA----EHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+...++.+..+|.+.|++++|+..|+...+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467888899999999999999999998864 46774 35888899999999999999999887
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.39 E-value=0.95 Score=37.97 Aligned_cols=88 Identities=9% Similarity=-0.000 Sum_probs=57.6
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007881 11 FTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
.....++..+...+........++.+++.+ ..++..+|.++..|++.. .++....++. ..+......+++.+.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 345567777777778888888888888776 467778888888888763 3444455542 223344445666666666
Q ss_pred ChhHHHHHHHHH
Q 007881 91 RPKNAIDAFINL 102 (586)
Q Consensus 91 ~~~~A~~~~~~m 102 (586)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666554
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.38 E-value=0.19 Score=40.35 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=66.0
Q ss_pred HHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----chhHHHHHHHHhhcCCh
Q 007881 360 LLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPND----SGNHVLLSNMFAATGRW 433 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 433 (586)
+++..|+++.|++.|.+. .+- -..+.||.-..+++-+|+.++|+.-+++++++.-+. -..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888776 222 356778888888888888888888888888875322 23566667778888999
Q ss_pred HHHHHHHHHHHhCCC
Q 007881 434 EEADLVRKEMKDVGI 448 (586)
Q Consensus 434 ~~a~~~~~~m~~~g~ 448 (586)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999888888877663
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.32 E-value=0.2 Score=47.62 Aligned_cols=162 Identities=9% Similarity=0.006 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCC--C--ChH
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN---YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK--P--GAE 352 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~ 352 (586)
+|..+..++-+.-++.+++.+-+.-... .|..|. .....++..+....+.++++++.|+...+--.-. | ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3344444444444444444444333221 232231 1223334455555566666666666554321111 1 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhccC------C
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-------PMRPTIS-----VWGALLNACRVYGKPELGRIAADNLFKLD------P 414 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p 414 (586)
+|..|...|.+..++++|.-+..+. +++.=.. +...+.-+++..|....|.+..+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 5666666666666666654443332 2221111 12233445666677766766666665542 1
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 415 NDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 415 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
-.......++++|...|+.|.|..-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1223334566777777776666655554
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.17 E-value=2.4 Score=38.43 Aligned_cols=194 Identities=18% Similarity=0.134 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMP-----ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
...+......+...+.+..+...+.... ......+..+...+...+....+.+.+..... ....+ .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA--LDPDP-DLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--CCCCc-chHHHHH
Confidence 3455556666666676666666665543 13334455555556666667777777777665 22111 1122222
Q ss_pred HH-HhhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHH
Q 007881 322 LS-ACSRAGAVEKGMKIFYSMTLKYGIKP----GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT--ISVWGALLNAC 393 (586)
Q Consensus 322 l~-a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~ 393 (586)
.. .+...|+++.|...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 22 56777777777777777642 222 2333444444466677788888777776 33333 56677777777
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
...++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77778888888888888887765555666666666667788888777776653
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.13 E-value=0.17 Score=46.46 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=81.3
Q ss_pred HHHHHHhhCC--CCCeeHHHHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC--------
Q 007881 265 DAEIAFNKMP--ERNLVCWNAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG-------- 329 (586)
Q Consensus 265 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g-------- 329 (586)
..++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+ .|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 3456677776 57888899988888754 557777778889999 899999999999999876553
Q ss_pred --------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007881 330 --------AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 330 --------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
+-+-++.++++| +.+|+.||.++-..|++++++.+..-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234578899999 56799999999999999999988643
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.97 E-value=4.3 Score=40.31 Aligned_cols=352 Identities=12% Similarity=0.023 Sum_probs=163.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCC----CCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007881 15 CLFKASSALHIPVTGKQLHALALKSGQ----IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
..+.++...|++.+|+.++++++..=+ ..+..+||.++-++++.=-++ +-+.+...=..-|--+|-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHH
Confidence 345566778888888888887775533 367788888777776532111 111121111112333444443221
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC--CChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 007881 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC--SLLQLGRQLHGFLVRSGFDGNV-SVCNGLVDFYGKCNEVGLAKV 167 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~ 167 (586)
..++.-.-..+.|...-+..++.-..-. .++.--.++++.-...-+.|+- -+...|+.-+.+ +.+++..
T Consensus 209 ------~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 ------HAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred ------HHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 1111100011334444444444433222 1223333444433333344442 233344444444 3333333
Q ss_pred HHhcC--------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHH-------HHHHHh-c---ccCc
Q 007881 168 VFDGI--------IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISS-------VLSACA-R---IAGL 228 (586)
Q Consensus 168 ~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~-~---~~~~ 228 (586)
+-+.+ .+.=+.++..++...++.++..+|-+.+.-+.. +.|+...-.- +-+..+ . ..++
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 32222 222345777888888888888888887766654 2343321111 111111 0 0112
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCC-HHHHHHHHhhCCC---CCeeHHHHHHH----HHHhc---CCH
Q 007881 229 ELGRSVHAVAVKACVEGNIFVGSAL---VDMYGKCGS-IQDAEIAFNKMPE---RNLVCWNAIIG----GYAHQ---GHA 294 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~----~~~~~---g~~ 294 (586)
..-..++..+...++..- ....-| ..-+.+.|. -++|.++++.+.+ -|...-|.+.. .|.+. ...
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 222333444433333211 111111 222444454 5667777766653 33333333221 12211 123
Q ss_pred HHHHHHHHHhhhccCCCCCCHH----HHHHHHH--HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007881 295 DMALSSFEEMTSMRCEAVPNYV----TLVCVLS--ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~----t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
.+-+.+-+-+.+ .|+.|-.+ .-|.+.. -+...|++.++.-+-..+. .+.|++.+|..+.-.+....+++
T Consensus 438 ~rLlkLe~fi~e--~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 438 PRLLKLEDFITE--VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred HHHHHHHHHHHh--cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHH
Confidence 333333333334 55555322 2222222 2345677777766555553 45777777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHH
Q 007881 369 RAYEIIKEMPMRPTISVWGA 388 (586)
Q Consensus 369 ~A~~~~~~m~~~p~~~~~~~ 388 (586)
+|.+++..+| |+..++++
T Consensus 513 eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 513 EAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHhCC--CchhhHHH
Confidence 7777777775 45555554
No 236
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=6.2 Score=41.97 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=61.3
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCC---ChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHH
Q 007881 20 SSALHIPVTGKQLHALALKSGQIH---DVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAI 96 (586)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 96 (586)
+...+.+++|..+-.... |..| -..++...|+.+.-.|++++|-++.-.|...+..-|---+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 344455555555433332 2333 23467778888888888888888888888878888887777777777665433
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhc
Q 007881 97 DAFINLRRTGGEPDLITFCAFLNACSD 123 (586)
Q Consensus 97 ~~~~~m~~~g~~p~~~t~~~ll~~~~~ 123 (586)
.+ +.....+.+...|..+|..+..
T Consensus 444 ~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 444 PY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---CCCCCcccCchHHHHHHHHHHH
Confidence 32 2221122345567777777665
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=94.90 E-value=0.64 Score=46.43 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=54.8
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 368 DRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 368 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+|.++.++. ... -|......+..+....++.+.|...|+++..++|+.+..+...+..+.-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3455555444 222 35566666666666677788888888888888888888888888888888888888888777544
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.84 E-value=0.27 Score=41.67 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH----HhcCCCCChHH
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT----LKYGIKPGAEH 353 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 353 (586)
..++..+...|++++|+.+.+.+.. .. +-|...|..++.+|...|+...|.+.|+.+. +..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445556666777777777777666 21 2356666777777777777777777665543 23466676554
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.84 E-value=0.2 Score=45.96 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=76.1
Q ss_pred HHHHHhccCC--CCCcccHHHHHHHHHcC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------
Q 007881 63 DADKMFDEMP--ERNLATWNAYISNAVLG-----GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL--------- 126 (586)
Q Consensus 63 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--------- 126 (586)
..++.|...+ ++|-.+|-+.+..+... +.++=....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888898888877643 5566666778899999999999999999998755432
Q ss_pred -------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007881 127 -------LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 127 -------~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
-+=+..++++|...|+-||-.+-..|++++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12366788888888888888888888888877765
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.55 E-value=0.64 Score=47.28 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=83.2
Q ss_pred HHhcCCHHHHHHHHH--HhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007881 288 YAHQGHADMALSSFE--EMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG 365 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~--~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 365 (586)
....|+++++.+..+ ++. ..+ | ..-.+.++.-+-+.|..+.|+++-..-.. -.+...++|
T Consensus 271 av~~~d~~~v~~~i~~~~ll---~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg 332 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL---PNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLG 332 (443)
T ss_dssp HHHTT-HHH-----HHHHTG---GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT
T ss_pred HHHcCChhhhhhhhhhhhhc---ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcC
Confidence 445677877776665 222 122 2 34466777777888888888877543322 235566788
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 366 LVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 366 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+++.|.++.++.. +...|..|......+|+.+.|+..+.+. .-+..|+-.|...|+.+.-.++.+....
T Consensus 333 ~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888776653 7778888888888889998888888875 3466677778888888777777766666
Q ss_pred CC
Q 007881 446 VG 447 (586)
Q Consensus 446 ~g 447 (586)
+|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.52 E-value=0.39 Score=44.27 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVD 359 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 359 (586)
|+.-+.. .+.|++.+|...|...++...+-.-....+-.|..++...|+++.|..+|..+.++++-.|. +..+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5544433 34566777777777766621111111234445666777777777777777766665544444 245555555
Q ss_pred HHHhcCChHHHHHHHHhC
Q 007881 360 LLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m 377 (586)
...+.|+.++|...|++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555555555555555554
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.50 E-value=5.7 Score=44.31 Aligned_cols=83 Identities=14% Similarity=-0.003 Sum_probs=44.5
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
.+.+|-.+|++.+|+.+..++.. +-.--..+-..|+.-+...+++-+|-++..+..-.|. -.+..+++...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHH
Confidence 44566666666666666655521 1111122235566666677777777777666532222 2233344555666
Q ss_pred HHHHHHHHHh
Q 007881 401 LGRIAADNLF 410 (586)
Q Consensus 401 ~a~~~~~~~~ 410 (586)
+|.++.....
T Consensus 1044 eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1044 EALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcc
Confidence 7766665544
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=3.2 Score=38.86 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=62.6
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007881 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
....|+..+|..+|+..... . .-+...-..+..+|...|+.+.|..++..+-.+ --.........-|..+.+....
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--A-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--C-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34456666666666655551 1 012333445555666666666666666555321 0000111111223334444433
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCchhHHHHHHHHhhcC
Q 007881 368 DRAYEIIKEMPMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD--PNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 368 ~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 431 (586)
.+..++-++....| |...-..|...+...|+.+.|.+.+-.+++.+ -.+...-..|+.++.-.|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333332333 33344444555555566665555544444432 233444445555444444
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.42 E-value=5.8 Score=39.35 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=85.4
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHH-H
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE-AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY-A 355 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~ 355 (586)
..+|...+..-.+..-.+.|..+|-+..+ .+ +.++...+++++.-++ .|+...|..+|+.-... -||...| +
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk--~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRK--EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhc--cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 34566666666666667777778877777 55 5566777777776443 56777777777765543 2343333 3
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM--PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
-.+.-+.+.++-+.|..+|+.. .+..+ ..+|..+|.--...|+...+..+-+++.+.-|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 4555666777777777777754 22222 4567777777777777777777777777776653
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.41 E-value=2.6 Score=35.29 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHH
Q 007881 217 SVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 217 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 296 (586)
.++..+...+.......+++.+.+.+. .+....+.++..|++.+ .++..+.+.. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 344444444555555555555555543 45556666666666543 2233333331 1222223334444444444445
Q ss_pred HHHHHHHh
Q 007881 297 ALSSFEEM 304 (586)
Q Consensus 297 A~~~~~~m 304 (586)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 54444443
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=94.32 E-value=3.1 Score=41.74 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=102.2
Q ss_pred eHH--HHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhc---------cCCHHHHHHHHHHh
Q 007881 279 VCW--NAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSR---------AGAVEKGMKIFYSM 341 (586)
Q Consensus 279 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~---------~g~~~~a~~~~~~~ 341 (586)
..| ...+.|.... -..+.|+.+|.+.... +.+.|+ ...|..+..++.. .....+|.++-+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 556 5556555441 1356788889988832 235566 3444444333221 23455666766666
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007881 342 TLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 342 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
++ +.| |......+..++.-.|+++.|..+|++. .+.||. .+|......+.-.|+.++|.+.+++.++++|....
T Consensus 331 ve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 331 SD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred Hh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 53 334 4666677777778888899999999998 566764 55666666677899999999999999999997554
Q ss_pred hHH--HHHHHHhhcCChHHHHHHHH
Q 007881 419 NHV--LLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 419 ~~~--~l~~~~~~~g~~~~a~~~~~ 441 (586)
.-. ..+.+|... ..++|.+++-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 433 334455544 4566666554
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.25 E-value=4.6 Score=39.76 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=24.4
Q ss_pred CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC
Q 007881 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKAC 242 (586)
Q Consensus 210 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (586)
.|-..+.+++.++.-.|+.++|.+..+.+.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 355566777777777888888888888887664
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.15 E-value=1.6 Score=36.32 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=30.9
Q ss_pred HhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 362 GRAGLVDRAYEIIKEM----PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+.|++++|.+.|+.+ |..| ..-.--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3455556665555555 2111 223344455666666666666666666666666543
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.01 E-value=2.3 Score=34.56 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC
Q 007881 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVE 244 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (586)
.+.-+..+++.|+-++--++++++.+. -.+++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 445567777888888888888877653 3677777778888888888888888888888777754
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.88 E-value=2.2 Score=43.53 Aligned_cols=157 Identities=11% Similarity=0.010 Sum_probs=93.7
Q ss_pred HHHHcCCChhHHHHHHH--HHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007881 84 SNAVLGGRPKNAIDAFI--NLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 84 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
....-.++++++.+... ++.. .+ ...-.+.++.-+-+.|..+.|.++-. |.. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34455678888766664 1111 11 23446777777888888888887643 221 22345568899
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 007881 162 VGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241 (586)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (586)
++.|.++-++.. +...|..|.....+.|+++-|.+.|++..+ +..++-.+...|+.+.-.++.......
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988877665 567899999999999999999888876543 455555666677777766666666555
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007881 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNK 272 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 272 (586)
|- +|....++...|++++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 33344445555666666666554
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.83 E-value=2.8 Score=34.86 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhccCCCCc
Q 007881 399 PELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~ 417 (586)
...|...|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5567777777777777754
No 252
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.71 E-value=12 Score=40.38 Aligned_cols=76 Identities=8% Similarity=-0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc
Q 007881 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA 226 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 226 (586)
-...+..+.+.+++....+++.. ...+...-.....+....|+.++|....+.+=..| .........++..+.+.|
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 33444455566666666663322 22344344445556666676666665555554433 222334444554444333
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.53 E-value=3.8 Score=42.39 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-----HHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCC
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY-----VTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPG 350 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~ 350 (586)
....+++...-.|+-+.+++.+.+..+. .++.-.. .+|..++..++. ....+.|.++++.+.++ -|+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~ 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPN 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCC
Confidence 3344555556667777777777776552 3332221 233344433333 45788899999999765 577
Q ss_pred hHHHHH-HHHHHHhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH-H
Q 007881 351 AEHYAC-VVDLLGRAGLVDRAYEIIKEMPM-R-----PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV-L 422 (586)
Q Consensus 351 ~~~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~ 422 (586)
...|.. -.+.+...|++++|++.|++.-. + .....+--+...+....++++|...+.++.+...-+...|. .
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 655543 34567778999999999997621 1 12344555666778889999999999999997655445554 4
Q ss_pred HHHHHhhcCCh-------HHHHHHHHHHHh
Q 007881 423 LSNMFAATGRW-------EEADLVRKEMKD 445 (586)
Q Consensus 423 l~~~~~~~g~~-------~~a~~~~~~m~~ 445 (586)
.+..+...|+. ++|.++|++...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 45556778888 888888887765
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.48 E-value=0.15 Score=30.49 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777778888888888888888887775
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.40 E-value=0.73 Score=37.14 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=57.6
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-C-CHH---HHHHHHHHHHHcC
Q 007881 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-P-TIS---VWGALLNACRVYG 397 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p-~~~---~~~~ll~~~~~~~ 397 (586)
+.+..|+++.|++.|.+... -.+.....||.-.+++.-.|+.++|++-+++. .+. | .-. .|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667777777777777653 22334667777777777778777777777665 111 1 111 2222233467788
Q ss_pred CHHHHHHHHHHHhccCCC
Q 007881 398 KPELGRIAADNLFKLDPN 415 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~ 415 (586)
+.+.|..-|+.+-+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888777654
No 256
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.33 E-value=0.22 Score=29.56 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 385 VWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
.|..+...+...|++++|+..++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666667777777777777777777777754
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.25 E-value=6.1 Score=35.62 Aligned_cols=197 Identities=15% Similarity=0.077 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe-eHHHHHHH-H
Q 007881 213 FMISSVLSACARIAGLELGRSVHAVAVKA-CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL-VCWNAIIG-G 287 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~-~ 287 (586)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555555444432 2222344455555556666666677766666553 221 22333333 6
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 007881 288 YAHQGHADMALSSFEEMTSMRCEAVP----NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLG 362 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 362 (586)
+...|+.+.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 140 LYELGDYEEALELYEKALE----LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh----cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHH
Confidence 7778888888888888744 223 2334444444466778888888888888643 222 3567777788888
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 363 RAGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 363 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
..+.+++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888888877 44444 445555555555667789999999998888876
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=2.6 Score=40.04 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHH----HHHHHhhccCCHH
Q 007881 260 CGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLV----CVLSACSRAGAVE 332 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~----~ll~a~~~~g~~~ 332 (586)
.|+..+|-..++++.+ .|..+|+--=.+|.-+|+.+.-...++++..+ ..||...|. .+.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4555555555555543 35556666666666666666666666665541 223332221 2223344556666
Q ss_pred HHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 333 KGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+|.+.-++..+ +.| |.-.-.++...+.-.|++.++.++..+-
T Consensus 193 dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66665555432 222 2333344555555566666666665554
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.14 E-value=6.2 Score=39.85 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHHHHH
Q 007881 319 VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP-M-RPT--ISVWGALLNACR 394 (586)
Q Consensus 319 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~ 394 (586)
..+..++-+.|+.++|++.|+++.+.+...-...+...|+..|...+.+.++..++.+.. + -|. ...|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 356667778899999999999998754322335567789999999999999999998873 1 133 345666554444
Q ss_pred HcCCH---------------HHHHHHHHHHhccCCCC
Q 007881 395 VYGKP---------------ELGRIAADNLFKLDPND 416 (586)
Q Consensus 395 ~~~~~---------------~~a~~~~~~~~~~~p~~ 416 (586)
..++. ..|.++..++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 33331 23557778887777653
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=1 Score=41.54 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=65.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK-PGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT-ISVWGALL 390 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll 390 (586)
.|+..+. +.+.|++..|...|...+++|.-. -....+--|.+.+...|++++|...|..+ |..|- +...--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4665554 446677888888888887654211 11334555777788888888887777766 22222 24555566
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007881 391 NACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
......|+.++|...++++.+..|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6667777777777777777777776543
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=1.4 Score=41.68 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=116.3
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHHhcC
Q 007881 290 HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV----VDLLGRAG 365 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g 365 (586)
-.|+..+|...++++.+ ..+.|...+...=.+|...|+.+.-...++.+.. ...||...|..+ .-++..+|
T Consensus 115 ~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 47888899999999987 3566778888888899999999999999988864 346676555444 34456899
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHHHH
Q 007881 366 LVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPN----DSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 366 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
-+++|++.-++. .+.| |...-.++...+-..|+..++.++..+-...-.. -...|-..+-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999887 5554 5556667777788899999999887765543221 122344455556777999999999
Q ss_pred HHHHHhCCCccCCc
Q 007881 440 RKEMKDVGIKKGAG 453 (586)
Q Consensus 440 ~~~m~~~g~~~~~~ 453 (586)
|+.=.-+.+.++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 99866555555543
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.83 E-value=7.7 Score=35.68 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 007881 288 YAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~ 306 (586)
|.+.|.+..|..-+++|++
T Consensus 177 Y~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhcChHHHHHHHHHHHh
Confidence 4455555555555555554
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.81 E-value=7.8 Score=35.67 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 390 LNACRVYGKPELGRIAADNLFKLDPNDS---GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..-|.+.|.+..|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3447888999999999999998766544 3555677889999999999988776654
No 264
>PRK15331 chaperone protein SicA; Provisional
Probab=92.81 E-value=0.85 Score=38.79 Aligned_cols=84 Identities=8% Similarity=-0.094 Sum_probs=35.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007881 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
-+.|++++|..+|+-+...+. -|..-+..+..++-..+++++|...|......+.. |+...--...+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 345555555555555443221 11222222333333344555555555444433321 2222222344555555555555
Q ss_pred HHHhhC
Q 007881 268 IAFNKM 273 (586)
Q Consensus 268 ~~~~~m 273 (586)
..|+..
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 555443
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.66 E-value=3.4 Score=41.61 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCC
Q 007881 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPN--DSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGA 452 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 452 (586)
..+=..|..++.+.|+.++|++.++.+.+..|. +......|+..+...+++.++..++.+--+...++..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 334455666677778888888877777766654 3456667777777778888887777775443343433
No 266
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.56 E-value=12 Score=37.24 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHH-HH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTL-VC 320 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~-~~ 320 (586)
..++..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++. |+..-|..+|+--.. --||...| .-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~----~f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL----KFPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH----hCCCchHHHHH
Confidence 45677778888888889999999988764 788899999998774 777889999987766 23554443 45
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVY 396 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 396 (586)
.+.-+...++-+.|..+|+..+.+ +..+ ...|..+|+-=..-|++..|..+=++| ..-|...+-..+.+-|...
T Consensus 472 yl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 666778889999999999976653 3333 678999999888999999888877777 3345555555555554443
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.37 E-value=10 Score=36.09 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=11.5
Q ss_pred cCCChHHHHHHHHHHHHh
Q 007881 123 DCSLLQLGRQLHGFLVRS 140 (586)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~ 140 (586)
+.|+.+.|...+.++...
T Consensus 5 ~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhCCHHHHHHHHHHhhhH
Confidence 456777777777666543
No 268
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.32 E-value=7.4 Score=34.70 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=26.3
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 417 SGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..+|..|+.-|...|..++|..+|+......
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3578889999999999999999999887643
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.57 E-value=1 Score=42.21 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 384 SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.++..++..+...|+.+.+...++++...+|-+...|..+..+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777777788888888888888888888888888888888888888888888888765
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.42 E-value=0.85 Score=39.80 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007881 361 LGRAGLVDRAYEIIKEM-PMRP------TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
+.+.|++++|..-|... ..-| -.+.|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45566666666666554 1111 2344555556678889999999999999999998888888888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 007881 434 EEADLVRKEMKDVG 447 (586)
Q Consensus 434 ~~a~~~~~~m~~~g 447 (586)
++|..=++++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988754
No 271
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=10 Score=40.72 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+-..|+.+|.+.++.+.-.++++..
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcC
Confidence 3344444444444444444444433
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.93 E-value=3.6 Score=35.22 Aligned_cols=132 Identities=8% Similarity=0.011 Sum_probs=63.1
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHH--H
Q 007881 78 TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLI-TFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS-VCNGL--V 153 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l--l 153 (586)
.|.+.+. +++.+..++|+.-|..+.+.|..-=+. ..-......+..|+...|...|.++-...-.|... -..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444332 345566666666666666554321000 01111122445566666666666655443223222 11111 1
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 007881 154 DFYGKCNEVGLAKVVFDGIIDK-ND---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEP 210 (586)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 210 (586)
-.+...|.+++.....+-+..+ ++ ..-.+|.-+-.+.|++.+|.+.|..+....-.|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1234566666666655554321 21 122345555566777777777777665543344
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.79 E-value=3.5 Score=39.53 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHhhCCC-------CCeeHHHHHHHHHHhcCC----HHHHHHHHHHhhhccCCCCCC-H-HHHHHHHHHhhccCC
Q 007881 264 QDAEIAFNKMPE-------RNLVCWNAIIGGYAHQGH----ADMALSSFEEMTSMRCEAVPN-Y-VTLVCVLSACSRAGA 330 (586)
Q Consensus 264 ~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~g~~pd-~-~t~~~ll~a~~~~g~ 330 (586)
..|..+|+.|.+ ++...+.+|+.. ..++ .+.+..+|+.+.+ .|+..+ . .....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~--~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLAD--AGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHhccccch
Confidence 345555555553 344445444433 1222 3566777777777 565543 3 333444433332222
Q ss_pred --HHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007881 331 --VEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 331 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
+.++.++++.+.+. |+++...+|..+.-
T Consensus 196 ~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 196 EKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 44778888888665 88888877776543
No 274
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.51 E-value=50 Score=40.38 Aligned_cols=308 Identities=14% Similarity=0.065 Sum_probs=168.1
Q ss_pred HHHhcCCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-CCCCChhhHHHHHHHHHHcCCh
Q 007881 119 NACSDCSLLQLGRQLHGFL----VRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDG-IIDKNDVSWCSMLVVYVQNYEE 193 (586)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 193 (586)
.+-.+.+.+..|...++.- .+. ......+-.+...|+.-++++....+... ...+ +....|......|++
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 3444556666777666652 111 11233444555588888888777666652 3322 233455666778999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHhh
Q 007881 194 ENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFV-GSALVDMYGKCGSIQDAEIAFNK 272 (586)
Q Consensus 194 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~ 272 (586)
..|..-|+.+.+.+ ++...+++-++......+.++......+-..... .+.... ++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999998754 3336678877777777777776665443333322 222222 3333444567778777776666
Q ss_pred CCCCCeeHHHHH-HH-HHHhcC--CHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH---------
Q 007881 273 MPERNLVCWNAI-IG-GYAHQG--HADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFY--------- 339 (586)
Q Consensus 273 m~~~~~~~~~~l-i~-~~~~~g--~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~--------- 339 (586)
..+..+|.+. +. .+.+.. +.-.-.++.+.+++ .-+. =+.+|+..|.+..+.++.-
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~--~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE--LVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHH--Hhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5666677665 22 222221 11111123333332 1111 1222333322222222211
Q ss_pred -HhHHhcCCCCChHH------HHHHHHHHHhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHHcCCHHHHH
Q 007881 340 -SMTLKYGIKPGAEH------YACVVDLLGRAGLVDRAYEIIKEM----PMRP-----TISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 340 -~~~~~~~~~p~~~~------~~~li~~~~~~g~~~~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
......+..++..+ |..-+..-....+..+-+--+++. ..+| -..+|-.....++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111133333221 111111111111122222222221 1122 2467888899999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 404 IAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
...-++.+..+ +..+.-.+..+...|+...|..++++..+...
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99888888875 46888899999999999999999999886543
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=16 Score=34.46 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=66.6
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeeHHH---HHHHHHHhcCCHHH
Q 007881 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER-NLVCWN---AIIGGYAHQGHADM 296 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~---~li~~~~~~g~~~~ 296 (586)
.....|+...+..++......... +...--.+...|...|+.+.|..++..++.. ....|- +-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777788877777776554 3455556788888888888888888888741 111121 22333333333333
Q ss_pred HHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007881 297 ALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333322 13 344444555566666777776665554443
No 276
>PRK09687 putative lyase; Provisional
Probab=90.33 E-value=17 Score=34.65 Aligned_cols=80 Identities=10% Similarity=-0.084 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcC-CHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG-HADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
+..+-...+.++++.|+.+....+...+..+|...-..-+.++.+.+ ...++...+..+.. .+|...-...+.+
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-----D~~~~VR~~A~~a 215 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-----DKNEEIRIEAIIG 215 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-----CCChHHHHHHHHH
Confidence 34444444555555554332222222233333333333333333332 12234444444433 1344444444455
Q ss_pred hhccCC
Q 007881 325 CSRAGA 330 (586)
Q Consensus 325 ~~~~g~ 330 (586)
+.+.|+
T Consensus 216 Lg~~~~ 221 (280)
T PRK09687 216 LALRKD 221 (280)
T ss_pred HHccCC
Confidence 555544
No 277
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.28 E-value=19 Score=38.71 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 007881 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 124 (586)
+...|- +|--+.|.|++++|.++..+... ........|...+..+...
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 333443 44455666666666666644432 2333445555566665543
No 278
>PRK12798 chemotaxis protein; Reviewed
Probab=90.27 E-value=21 Score=35.53 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHhhCCC----CCeeHHHHHHHHHH-hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007881 260 CGSIQDAEIAFNKMPE----RNLVCWNAIIGGYA-HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 334 (586)
.|+.++|.+.+..+.. +....|-+|+.+-. ...+..+|+++|+...-.-.|--..+....--+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 6899999999998864 45667777777644 456799999999988762233222334455555667889999999
Q ss_pred HHHHHHhHHhcCCCCChHHHH-HHHHHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007881 335 MKIFYSMTLKYGIKPGAEHYA-CVVDLLGR---AGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 335 ~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
..+-.....+|.-.|=...|. .+...+.+ ....+.-..++..|.-.--...|..+...-...|+.+.|....+++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 888877777766555433332 23333333 33445556666666433345688888888999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHh-----hcCChHHHHHHHHHHHhC
Q 007881 411 KLDPNDSGNHVLLSNMFA-----ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~ 446 (586)
.+... ...-...+..|. -..+.+++.+.++.+-..
T Consensus 285 ~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 285 KLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 98633 222333333343 344567777766665443
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.17 E-value=0.64 Score=28.23 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 419 NHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
++..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888999999999999988854
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.16 E-value=16 Score=36.19 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 381 PTISVWGALLNACRVYGKPELGRIAADNLFKLDP----NDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
....+|..+...+++.|+++.|...+.++....+ ..+.....-+..+...|+.++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3557889999999999999999999999988652 2456667778889999999999999988877433
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.82 E-value=27 Score=36.25 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=122.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPER---NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+..+|+..++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|-.++.+..+-...-.|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 4667888888889999999999999987643 223455555555555888888888877665211122333333333
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGA-EHYACVVDLLGRAGLVDRAY---EIIKEM-PMRPTISVWGALLNA----- 392 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~----- 392 (586)
-+-..|++..|..+++.+..+ . |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.--
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 345678999999999999765 3 663 33344566777888888887 444443 222232233322222
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007881 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 445689999999999999999999999999888776655
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.48 E-value=29 Score=36.06 Aligned_cols=348 Identities=9% Similarity=0.032 Sum_probs=165.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007881 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF-CAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLV 153 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 153 (586)
+...|+.+|..--...+.+.+...++.++.. .|..+-| .....-=.+.|..+.+.++|++.+.. ++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4456777765544445555556666666542 4554433 22233334567777777777776654 455555555555
Q ss_pred HHHH-hcCChHHHHHHHhcCCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--
Q 007881 154 DFYG-KCNEVGLAKVVFDGIID------KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR-- 224 (586)
Q Consensus 154 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 224 (586)
.... ..|+.+...+.|+.... .+...|...|.--...+++.....++++.++. | ...|+....-+.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHH
Confidence 4433 34566666666665432 23456777776666777777777777777652 1 1112222111111
Q ss_pred -------ccCcHHHHHHHHHHHHh----CCCCchhHHHHHHHHHH-hcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcC
Q 007881 225 -------IAGLELGRSVHAVAVKA----CVEGNIFVGSALVDMYG-KCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQG 292 (586)
Q Consensus 225 -------~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 292 (586)
....+++.++-...... ...+.......-++--. ..+.++++.....+. ....-..+...-
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-------~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI-------VSIHEKVYQKSE 269 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-------HHHHHHHHHhhH
Confidence 11122222222111110 00000011111110000 011111111111110 000111122222
Q ss_pred CHHHHHHHHHHhhhcc-CCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007881 293 HADMALSSFEEMTSMR-CEAVP----NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 293 ~~~~A~~~~~~m~~~~-~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
...+....|+.-.+.. ..++| +..+|...+.--...|+.+...-+|+.... .+.-=...|-..+.-....|+.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCch
Confidence 2333333333333210 01222 345677777777777787777777776642 1111134455555555556777
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007881 368 DRAYEIIKEM-P-MRPTISVWGALLNA-CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 368 ~~A~~~~~~m-~-~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
+-|..++... . ..|+......+-.+ +-..|+...|..+++.+.+.-|.....-..-++...+.|+.+.+..
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 7777666654 1 11222222222222 3345688888888888877666655555555666677777777773
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.30 E-value=1.8 Score=36.73 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=28.2
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..++.+.+..++.-+.-+.|..+..-..-+..+...|+|.+|.++|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555555544
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.24 E-value=13 Score=31.68 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=54.2
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRAGLVDRAYEIIKEMP-MRPTISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~ 400 (586)
+.-.+.++.+++..+++.+. -+.|... .-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|....+-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34456678888888888774 4466532 22233445677888888888888883 3344455556666665554444
Q ss_pred HHHHHHHHHhccCC
Q 007881 401 LGRIAADNLFKLDP 414 (586)
Q Consensus 401 ~a~~~~~~~~~~~p 414 (586)
.=....+++.+.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44455555666554
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.24 E-value=14 Score=31.94 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=69.2
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007881 197 CQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPER 276 (586)
Q Consensus 197 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 276 (586)
+++++.+.+.+++|+...+..++..+.+.|....-. +++..++-+|.......+-.+.. ....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 345556666777777777888888887777655433 33344444444333332222221 222222222222222
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007881 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
=-..+..++..+...|++-+|+++.+.... . +...-..++.+-.+.++...-..+|+-.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~--~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK--V----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--c----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223455566777778888888888776533 1 1122234555555566555444444443
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.17 E-value=2.5 Score=39.71 Aligned_cols=76 Identities=9% Similarity=0.230 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHhHHHH
Q 007881 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEENGCQMFLTARR-----EGVEPKDFMISS 217 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 217 (586)
..++..++..+..+|+.+.+.+.++++.+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778889999999999999999888553 567899999999999999999999998865 467776665554
Q ss_pred HHHH
Q 007881 218 VLSA 221 (586)
Q Consensus 218 ll~~ 221 (586)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=9.4 Score=34.53 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=30.4
Q ss_pred CChHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 365 GLVDRAYEIIKEM-----PMRPTISVWGALLNA---CRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 365 g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.++++|+..++.. +.+.+...-.+++.+ -...+++.+|+.+|+++.....+++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3445555555544 222333334444443 3456788999999998887654443
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.77 E-value=0.74 Score=27.28 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 385 VWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777776663
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.63 E-value=26 Score=34.51 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=39.2
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
....+|..++..+.+.|+++.|...+.++........+ +......-....-..|+.++|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456777777777777777777777776651100000 222333334445566777777777766654
No 290
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.55 E-value=33 Score=35.55 Aligned_cols=155 Identities=10% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCC-CCCC-----hhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHH
Q 007881 82 YISNAVLGGRPKNAIDAFINLRRTG-GEPD-----LITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGNVSVCNG 151 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 151 (586)
++....-.|+-+.+++++.+-.+.+ +.-. ..+|..++..+.. ..+.+.+.+++..+.+. -|+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 3444445566667776666654321 2211 1123333333322 34556677777766665 344444332
Q ss_pred -HHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-
Q 007881 152 -LVDFYGKCNEVGLAKVVFDGIIDK-------NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC- 222 (586)
Q Consensus 152 -ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~- 222 (586)
-.+.+...|++++|.+.|++.... ....+--+.-.+.-..+|++|.+.|..+.+.. .-+..+|.-+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 234556667777777777654321 12223334555666677777777777776543 22333444333333
Q ss_pred hcccCc-------HHHHHHHHHHH
Q 007881 223 ARIAGL-------ELGRSVHAVAV 239 (586)
Q Consensus 223 ~~~~~~-------~~a~~~~~~~~ 239 (586)
...++. ++|.+++.++.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 334444 55555555443
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.27 E-value=8.4 Score=36.97 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhc--CC----ChHHHHHHHHHHHHhC
Q 007881 93 KNAIDAFINLRRTGGEPDLITFCAFLNACSD--CS----LLQLGRQLHGFLVRSG 141 (586)
Q Consensus 93 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g 141 (586)
++.+.+++.|.+.|++-+.++|-+.+-.... .. ....+..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4556678888888888777777654433322 12 2455777777777663
No 292
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.24 E-value=26 Score=33.98 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HhHHHHHHHHHhcccCcHHHHHHHHHHHHhC-----CCCchhH
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARR-EGVEPK---DFMISSVLSACARIAGLELGRSVHAVAVKAC-----VEGNIFV 249 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 249 (586)
+|-.+..++-+..++.+++.+-+.-.. .|..|. .....++-.++...+.++++.+.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554433222 222231 1223345556666667777777776655421 2223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-------CCee------HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPE-------RNLV------CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~ 316 (586)
+-+|...|.+..++++|.-+..+..+ .|.. +.-.|.-++-..|+...|.+..++..+. .-..-|..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl-al~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL-ALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-HHHhCChH
Confidence 67777777777777766544333211 2221 1122334455556666666665555441 00112332
Q ss_pred HH----HHHHHHhhccCCHHHHHHHHHHh
Q 007881 317 TL----VCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 317 t~----~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
++ ..+...|-..|+.+.|+.-|+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22 23334444555555555544443
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.22 E-value=2.1 Score=35.68 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.++.+++..++..+.-+.|+.+..-..-+..+...|+|++|.++|+...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5667777777777777777777777777777777777777777777776654
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.93 E-value=53 Score=37.21 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=100.3
Q ss_pred HHHHcCChHHHHHHHHHHHHC-----CCCCCHh--HHHHHHHHHhccc--CcHHHHHHHHHHHHhC--------CCCchh
Q 007881 186 VYVQNYEEENGCQMFLTARRE-----GVEPKDF--MISSVLSACARIA--GLELGRSVHAVAVKAC--------VEGNIF 248 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~--t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--------~~~~~~ 248 (586)
+-..+.++.+=+-+++++++. ..+.|.+ -|...+..++..| -++++..+ +.+++ ..|+..
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~---I~kh~Ly~~aL~ly~~~~e 936 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNY---IKKHGLYDEALALYKPDSE 936 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHH---HHhcccchhhhheeccCHH
Confidence 334566777777777776632 1222222 2444555555555 34444333 22332 234444
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHH--HHHHH
Q 007881 249 VG----SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVT--LVCVL 322 (586)
Q Consensus 249 ~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t--~~~ll 322 (586)
.+ .+..+-+...+.+++|.-.|+..-+ ..--+.+|...|++.+|+.+-.++.. . -|... --.|.
T Consensus 937 ~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~--~---~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 937 KQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE--G---KDELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC--C---HHHHHHHHHHHH
Confidence 43 4444444556777777777766543 12246677788888888888877654 1 23322 24667
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
.-+...++.-+|-++..+... .| ..-+..|+++..+++|..+.....
T Consensus 1007 s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 778888888888888876643 22 234567788888999988877663
No 295
>PRK09687 putative lyase; Provisional
Probab=87.88 E-value=26 Score=33.46 Aligned_cols=137 Identities=7% Similarity=-0.008 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007881 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALV 254 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li 254 (586)
+..+=...+.++.+.++ ++|+..+..+.. .+|...-...+.++.+.+ .-..+...+..+. ..++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHH
Confidence 33333344455555554 445555555554 234444444555555442 1234444444444 234566666677
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhh
Q 007881 255 DMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACS 326 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~ 326 (586)
.++++.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+ . .||...-...+.+|.
T Consensus 214 ~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--K--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--h--CCChhHHHHHHHHHh
Confidence 77777777543334444444443 234567777777775 67777777765 2 256666555555553
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.44 E-value=0.98 Score=27.39 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 385 VWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+|..|...|...|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777554
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.29 E-value=1.3 Score=41.95 Aligned_cols=96 Identities=9% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGK 398 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~ 398 (586)
.+-|.+.|.+++|+..|.... .+.| +.++|..-..+|.+..++..|+.-.... .+. .-...|..-..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999998775 4566 7888888888999999988877655544 111 112345555555556788
Q ss_pred HHHHHHHHHHHhccCCCCchhH
Q 007881 399 PELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
..+|..-++.+++++|.+...-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 8999999999999999865433
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.22 E-value=5.2 Score=35.11 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------eeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERN------LVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677888888888888888888877532 23455666677777787777777766654
No 299
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.73 E-value=2.1 Score=27.36 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+|..+...|...|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666666666666665
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.70 E-value=14 Score=32.43 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=63.8
Q ss_pred eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-----
Q 007881 279 VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA----- 351 (586)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----- 351 (586)
..+..+..-|++.|+.++|++.|.++.+ ....|. ...+..++..+...+++..+.....++..-..-..|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~--~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD--YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh--hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3566778889999999999999999888 444444 3456677888888899988888877765321111111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 352 -EHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 352 -~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
..|..|. +...+++.+|-+.|-+.
T Consensus 115 lk~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 115 LKVYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHH--HHHhchHHHHHHHHHcc
Confidence 2222222 23467888888888776
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.62 E-value=1 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 007881 135 GFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAK 166 (586)
Q Consensus 135 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 166 (586)
+++++.. |.+...|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 445667777777777777777664
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.57 E-value=13 Score=31.91 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=8.0
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 007881 289 AHQGHADMALSSFEEMTS 306 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~ 306 (586)
.+.|++.+|.+.|..+..
T Consensus 178 ~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccchHHHHHHHHHHHc
Confidence 344444444444444433
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=26 Score=32.10 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 007881 147 SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTA 203 (586)
Q Consensus 147 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (586)
..++.-..+|..+|..+.|-..+++.- -...+-++++|+++|++-
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHH
Confidence 345555566777776666555444321 122344556666666554
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.01 E-value=5.3 Score=37.66 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC-------CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh
Q 007881 40 GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE-------RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLI 112 (586)
Q Consensus 40 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 112 (586)
|.+.+..+...++..-....+++++...+-++.. |+... .+.++.+. .-++++++.++..=...|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4455666666777776667778888777665543 22221 12233332 335678888887778888888888
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 007881 113 TFCAFLNACSDCSLLQLGRQLHGFLVRSG 141 (586)
Q Consensus 113 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 141 (586)
|++.+++.+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888877777666553
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.53 E-value=0.67 Score=39.04 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=63.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhH
Q 007881 15 CLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 94 (586)
.+++.+...+.+......++.+++.+...+....+.++..|++.++.++..++++.... .-...+++.+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45777777888888888899998877667788899999999999888888888884433 333456667777777777
Q ss_pred HHHHHHHH
Q 007881 95 AIDAFINL 102 (586)
Q Consensus 95 A~~~~~~m 102 (586)
|.-+|.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777665
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.42 E-value=1.7 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777777777777777766
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.99 E-value=7 Score=26.24 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCc
Q 007881 420 HVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMKAAGY 495 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 495 (586)
...++-++.+.|++++|.+..+.+.+. +|...+.......+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456777889999999999999998763 45556665556667777777774
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.82 E-value=9.4 Score=29.50 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
+..+-+..+.. ..+.|++....+.+.||-+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~--~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFG--YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTT--SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhc--cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 55566666666 77889999999999999999999999999999976544 333377776643
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.48 E-value=3.3 Score=39.36 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007881 285 IGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR 363 (586)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 363 (586)
..-|.+.|.+++|++.|.+... +.| |.+++..-..+|.+...+..|..-....+. .-...+.+|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSR 170 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSR 170 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHH
Confidence 4569999999999999998877 567 899999999999999998887776655542 11233455555
Q ss_pred c-------CChHHHHHHHHhC-CCCCCH
Q 007881 364 A-------GLVDRAYEIIKEM-PMRPTI 383 (586)
Q Consensus 364 ~-------g~~~~A~~~~~~m-~~~p~~ 383 (586)
. |...+|.+-++.. .+.|+.
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4 5555555555444 566763
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.96 E-value=27 Score=30.12 Aligned_cols=131 Identities=9% Similarity=0.003 Sum_probs=74.3
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh
Q 007881 134 HGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF 213 (586)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 213 (586)
...+.+.+++|+...+..+++.+.+.|++... ..+...++-||..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L-----------------------------------~qllq~~Vi~DSk 61 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL-----------------------------------HQLLQYHVIPDSK 61 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH-----------------------------------HHHHhhcccCCcH
Confidence 33444556666666666666666666655443 3334455556655
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCC
Q 007881 214 MISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGH 293 (586)
Q Consensus 214 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 293 (586)
.....+-.+.. ....+.++--.|.++= ...+..+++.+...|++-+|.++.......+......++.+-.+.++
T Consensus 62 ~lA~~LLs~~~--~~~~~~Ql~lDMLkRL----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 62 PLACQLLSLGN--QYPPAYQLGLDMLKRL----GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSND 135 (167)
T ss_pred HHHHHHHHhHc--cChHHHHHHHHHHHHh----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCC
Confidence 55544433322 2333444443443320 01345567788889999999999888765555555666777666666
Q ss_pred HHHHHHHHHHhh
Q 007881 294 ADMALSSFEEMT 305 (586)
Q Consensus 294 ~~~A~~~~~~m~ 305 (586)
..-=..+|+-..
T Consensus 136 ~~lf~~V~~ff~ 147 (167)
T PF07035_consen 136 DQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHHHH
Confidence 554444444433
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.83 E-value=18 Score=27.91 Aligned_cols=86 Identities=9% Similarity=-0.054 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 007881 127 LQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARRE 206 (586)
Q Consensus 127 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (586)
-++|.-+-+.+...+- ....+--.-++.+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 3445444444443331 1222222334556778999999999999989999999877653 667777777777777777
Q ss_pred CCCCCHhHHH
Q 007881 207 GVEPKDFMIS 216 (586)
Q Consensus 207 g~~p~~~t~~ 216 (586)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 45544444
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.65 E-value=0.79 Score=38.60 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=60.5
Q ss_pred HHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHH
Q 007881 218 VLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 297 (586)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777777888888888777666788888999999998877888887774333 3334566667777777777
Q ss_pred HHHHHHhhh
Q 007881 298 LSSFEEMTS 306 (586)
Q Consensus 298 ~~~~~~m~~ 306 (586)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 777776544
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.62 E-value=1.8 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHH
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~ 441 (586)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677788888888888887765
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.32 E-value=12 Score=31.33 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=31.2
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007881 326 SRAGAVEKGMKIFYSMTLKYGIKPGAE-HYACVVDLLGRAGLVDRAYEIIKEMPMR 380 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 380 (586)
...++.+++..+++.+. -+.|+.. .-..-.-.+.+.|++++|..+|++....
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34677777777777774 3455422 2222233456777788888877777433
No 315
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.26 E-value=58 Score=33.35 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007881 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
....-+++..+.++-.+.-...+..+|..-| -+...|..++.+|... ..+.-..+++++++..+. |+....-|...
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3345567777777777777777888888754 4667788888888777 556777888888888776 66666777777
Q ss_pred HHhcCCHHHHHHHHhhCCCC------Ce---eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007881 257 YGKCGSIQDAEIAFNKMPER------NL---VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
|-+ ++.+.+...|.++..+ +. ..|..++.-- ..+.|..+.+..++... .|..--.+.+.-+-.-|..
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHhcc
Confidence 776 7778887777765421 11 1454444311 23455566666655542 3333334555555566777
Q ss_pred cCCHHHHHHHHHHhHH
Q 007881 328 AGAVEKGMKIFYSMTL 343 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~ 343 (586)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777776654
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.88 E-value=2.5 Score=24.76 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..+..++..|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999876
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.86 E-value=10 Score=28.94 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007881 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 294 ~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
.-++.+-++.+.. ..+.|++....+.+.||-+.+++..|.++|+.++.+. ..+...|..+++
T Consensus 23 ~we~rr~mN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFG--YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 3456666666666 6788999999999999999999999999999886443 334556766654
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.83 E-value=43 Score=31.58 Aligned_cols=59 Identities=20% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 387 GALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.....|...|.+.+|.++.++++.++|-+...+..|.+.|+..|+--.|.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34445688999999999999999999999999999999999999998888888888754
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.72 E-value=21 Score=35.87 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=35.6
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 007881 362 GRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
...|.++.+...+... .+.....+..+++......|++++|....+.++..+-.++......+..-...|-++++.-.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3444555554444443 11123344444444444555555555555555444333333322222222333445555555
Q ss_pred HHHHH
Q 007881 440 RKEMK 444 (586)
Q Consensus 440 ~~~m~ 444 (586)
+++..
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 55444
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.22 E-value=15 Score=28.29 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=58.7
Q ss_pred CchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 007881 25 IPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRR 104 (586)
Q Consensus 25 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 104 (586)
..++|.-+-+++...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|-.+++..-+.+|-.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456777787777665421 233333334567789999999999999999999999887543 55666666666667766
Q ss_pred CCCCCChhhHH
Q 007881 105 TGGEPDLITFC 115 (586)
Q Consensus 105 ~g~~p~~~t~~ 115 (586)
.| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 55 34444443
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.75 E-value=10 Score=29.02 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007881 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLV 153 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 153 (586)
++.+-++.+....+.|++....+.|+||.+.+++..|.++++-+.... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455556666667788888888888888888888888888888765332 22334555444
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.60 E-value=86 Score=34.22 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHH----HHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007881 150 NGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSML----VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI 225 (586)
Q Consensus 150 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (586)
..-+++..+...++.|..+-+.-.. |...-..+. .-+-+.|++++|...|-+-... +.|. .++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3445556666666666666544222 222222222 3345678888887776554332 2232 233344444
Q ss_pred cCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007881 226 AGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
.....--.+++.+.+.|+. +...-+.|+.+|.|.++.++-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4455555566677777765 55556677888888888777777666654
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.47 E-value=21 Score=37.10 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhh
Q 007881 248 FVGSALVDMYGKCGSIQDAEIAFNK 272 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~ 272 (586)
.-|..|.++..+.|++..|.+.|..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHh
Confidence 3444455555555555555554444
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.82 E-value=3.4 Score=25.61 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.++..|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888999999988888765
No 325
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.64 E-value=10 Score=40.15 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=102.1
Q ss_pred HHHHHHHHHhCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCee----------HHHHHHHHHHhcCCHHHH
Q 007881 232 RSVHAVAVKACVEGNI---FVGSALVDMYGKCGSIQDAEIAFNKMPE-RNLV----------CWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 232 ~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~----------~~~~li~~~~~~g~~~~A 297 (586)
..++.+|.+.--.|++ .+...++-.|-...+++...++.+.+.. ||.. .|.--++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 3445555554333433 3344455566677778877777776654 3221 121112222234677788
Q ss_pred HHHHHHhhhccCCCCCCHHHHHH-------HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC-hHH
Q 007881 298 LSSFEEMTSMRCEAVPNYVTLVC-------VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL-VDR 369 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd~~t~~~-------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~ 369 (586)
+...-.|.++...+.||...... +-+.|...+..+.|.+.|++. +.+.|+...--.+...+..+|. ++.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccc
Confidence 88877777754557888654332 223456667788888888876 4667875543333333333332 111
Q ss_pred HHHHHHhC--------CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 370 AYEIIKEM--------PMRPTI------SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 370 A~~~~~~m--------~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
..++ +.+ +.+-.. .-....+.+-.-.+++..|.++.+.|.++.|+.-..
T Consensus 340 s~El-q~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 340 SLEL-QQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred hHHH-HHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 1111 111 111110 011234455566789999999999999999885433
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.99 E-value=13 Score=28.78 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=34.4
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007881 376 EMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 376 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.+.+-|++.+..+.+.+|++.+++..|.++++-+.....+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3466799999999999999999999999999988876554443555444
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.88 E-value=82 Score=32.32 Aligned_cols=168 Identities=12% Similarity=0.061 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
....-++++.++..-+.+-.+.+..+|.. .+-..|..++..|..+ ..++-..+|+++.+ .. -|.+.+..-+.-
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~d--fnDvv~~ReLa~ 140 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YD--FNDVVIGRELAD 140 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hc--chhHHHHHHHHH
Confidence 33444555556555555555555555543 4445566666666666 44556666666655 22 344444444444
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 007881 325 CSRAGAVEKGMKIFYSMTLKYGIKPG------AEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPTISVWGALLNACR 394 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 394 (586)
+...++.+.+..+|..+..+ +-|. .+.|.-|+..- ..+.+..+.+..+. +...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44446666666666665432 2221 12333333221 12333333333333 22222333444444455
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
...++.+|+++...+++.+..|..+...+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 56666666666666666554444443333
No 328
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.42 E-value=29 Score=28.55 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHhcc-CCCCc-hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 398 KPELGRIAADNLFKL-DPNDS-GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~-~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..+++.+++.+.+. .|... .....|+-++.+.++++.++++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 455666777777752 23322 2333455567777777777777777665
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.29 E-value=13 Score=37.31 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=71.0
Q ss_pred hcCCHHHHHH-HHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007881 290 HQGHADMALS-SFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 290 ~~g~~~~A~~-~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
..|+...|-+ ++.-+.. ..-.|+.+...+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|+++
T Consensus 301 ~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN--QQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHh--CCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 3566555544 3333333 23345555544443 4567788888777766643 34445566777777777788888
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 369 RAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 369 ~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+|..+-..| +.+ .+..+...........|-++++.-.++++..++|+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 887777766 211 23333333333445566777777777777777654
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.23 E-value=3.9 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=11.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCC
Q 007881 391 NACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
.++.+.|+.++|...++++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444455555555555444444
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.95 E-value=16 Score=32.49 Aligned_cols=73 Identities=14% Similarity=0.017 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 007881 194 ENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA---CVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 194 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
++|.+.|-++...+.- +.......+..+....+.+++.+++....+. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666665533 3333333444444456677777777666553 23567777777888888777777764
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.51 E-value=4.9 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+++.|...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 556666677777777777777766654
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.23 E-value=5.8 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998765
No 334
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.14 E-value=22 Score=33.76 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=59.4
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-C--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 007881 141 GFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID-K--------NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK 211 (586)
Q Consensus 141 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 211 (586)
|.+....+...++..-....+++++...+-.+.. + ..++|-- ++-.-++++++.++..=.+-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhccccc
Confidence 4444455555555555556666766666544422 1 1222222 2233456677777777777777788
Q ss_pred HhHHHHHHHHHhcccCcHHHHHHHHHHHHhC
Q 007881 212 DFMISSVLSACARIAGLELGRSVHAVAVKAC 242 (586)
Q Consensus 212 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (586)
.+++..+++.+.+.++...|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888877777777777766665543
No 335
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.12 E-value=69 Score=30.50 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHhhCCC--CC-eeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 248 FVGSALVDMYGKCGSIQ---DAEIAFNKMPE--RN-LVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
.+...++.+|...+..+ +|.++++.+.+ |+ ...+-.-+..+.+.++.+++.+.+.+|..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 34555666666655543 34444444432 22 23333334444446666666666666665
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.01 E-value=20 Score=33.41 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-
Q 007881 285 IGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR- 363 (586)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 363 (586)
|.+++..|++.+++...-+--+....++|...-...+ .|++.+....+.++-..-... .-.-+...|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 7778888888888765444333223455555444444 478888888887777666543 222234457777776654
Q ss_pred ----cCChHHHHHHHHh
Q 007881 364 ----AGLVDRAYEIIKE 376 (586)
Q Consensus 364 ----~g~~~~A~~~~~~ 376 (586)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 6889999888844
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.37 E-value=6.3 Score=21.86 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007881 386 WGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555444
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.67 E-value=4.1 Score=23.57 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 419 NHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888899999999999999998764
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.60 E-value=19 Score=32.02 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----CCCchhHHHHHHHHhhcCChHHHH
Q 007881 368 DRAYEIIKEMPMR--PTISVWGALLNACRVYGKPELGRIAADNLFKLD----PNDSGNHVLLSNMFAATGRWEEAD 437 (586)
Q Consensus 368 ~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~a~ 437 (586)
++|.+.|-.+.-. .+....-..+..|....+.+.++.++.+++++. ..|+..+..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666212 233333444444555677888888888888764 235778888888888888887763
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.45 E-value=8 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007881 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
.+.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456678999999999999999999999986443
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.75 E-value=26 Score=29.36 Aligned_cols=86 Identities=5% Similarity=0.024 Sum_probs=55.1
Q ss_pred hCCCCCh--hhhHHHHHHHHhcCCchHHHHHhccCCC---------CCcccHHHHHHHHHcCCC-hhHHHHHHHHHHHCC
Q 007881 39 SGQIHDV--FVGCSAFDMYSKTGLKDDADKMFDEMPE---------RNLATWNAYISNAVLGGR-PKNAIDAFINLRRTG 106 (586)
Q Consensus 39 ~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g 106 (586)
.+..++. ...|.++.-.+..+++.-..++++.+.. .+-.+|++++.+.++... ---+..+|..|++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 3444443 2356666666666677776666666532 355567777777766555 335666777777767
Q ss_pred CCCChhhHHHHHHHHhcC
Q 007881 107 GEPDLITFCAFLNACSDC 124 (586)
Q Consensus 107 ~~p~~~t~~~ll~~~~~~ 124 (586)
.+++..-|..++.++.+.
T Consensus 111 ~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 777777777777776654
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.47 E-value=1.3e+02 Score=32.55 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Q 007881 248 FVGSALVDMYGKCGSIQDAEIAFNKMPERNL 278 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 278 (586)
.+...|+..|...+++++|.+.+-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3444588999999999999999988876544
No 343
>PF13934 ELYS: Nuclear pore complex assembly
Probab=74.29 E-value=71 Score=29.30 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=50.3
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007881 281 WNAIIGGYA--HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358 (586)
Q Consensus 281 ~~~li~~~~--~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 358 (586)
|...+.||. .++++++|++.+-. ..+.|+... -++.++...|+.+.|..+++.+. ..-.+......++
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~ 148 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHH
Confidence 344445433 34556666665522 222233221 25555555677777777766552 1111222223333
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007881 359 DLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRV 395 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 395 (586)
.. ..++.+.||..+-+..+.+-....|..++..|..
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 33 4456777777766665322123455666655553
No 344
>PRK10941 hypothetical protein; Provisional
Probab=73.73 E-value=18 Score=34.05 Aligned_cols=62 Identities=18% Similarity=0.042 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+.|-.+|.+.++++.|..+.+.++.+.|+++.-+---+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34566677899999999999999999999999988888888999999999999988888764
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.40 E-value=71 Score=28.86 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
+.-++.+.+.+...+|+...++-.+ .+ +.|.-+-..++..++-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--ak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3445555555556666555555444 21 112334444555555555555555544433
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.05 E-value=81 Score=29.38 Aligned_cols=208 Identities=17% Similarity=0.230 Sum_probs=121.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH---CCC--CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh-----CCCCchhHH
Q 007881 181 CSMLVVYVQNYEEENGCQMFLTARR---EGV--EPKDFMISSVLSACARIAGLELGRSVHAVAVKA-----CVEGNIFVG 250 (586)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 250 (586)
-.+|..+.+.|++++.++.+++|.. ..+ .-+..+.++++.-.+.+.+.+.-..+++.-.+. +-..=-.+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3567777888888888887777743 112 234556777887777777766666665543321 100111233
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---------------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007881 251 SALVDMYGKCGSIQDAEIAFNKMPE---------------RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
+-|...|...|.+.+-.+++.++.+ .-...|..=|..|....+-..-..++++.... ....|.+
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi-KSAIPHP 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI-KSAIPHP 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh-hccCCch
Confidence 4567778888888887777776642 11245666677788777777777788876652 1223444
Q ss_pred HHHHHHHHHh-----hccCCHHHHHHHHHHhHHhcCC--CCCh---HHHHHHHHHHHhcCC----hHHHHHHHHhCCCC-
Q 007881 316 VTLVCVLSAC-----SRAGAVEKGMKIFYSMTLKYGI--KPGA---EHYACVVDLLGRAGL----VDRAYEIIKEMPMR- 380 (586)
Q Consensus 316 ~t~~~ll~a~-----~~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~li~~~~~~g~----~~~A~~~~~~m~~~- 380 (586)
... .+++-| .+.|.+++|-.-|-++-+.+.- .|.. --|-.|.+++.+.|- -.+|. |.+
T Consensus 228 lIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK------PyKN 300 (440)
T KOG1464|consen 228 LIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK------PYKN 300 (440)
T ss_pred HHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC------CCCC
Confidence 433 445545 3567888876554444444422 2322 235566777777662 11211 333
Q ss_pred -CCHHHHHHHHHHHHHc
Q 007881 381 -PTISVWGALLNACRVY 396 (586)
Q Consensus 381 -p~~~~~~~ll~~~~~~ 396 (586)
|.....+.|+.+|..+
T Consensus 301 dPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN 317 (440)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 5667778888887654
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.35 E-value=91 Score=31.66 Aligned_cols=174 Identities=10% Similarity=0.043 Sum_probs=83.3
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChhh--hHHHHHHHHhcCCchHHHHHhccCCCCCcc--cHHHHHHHHHcCCChhHHH
Q 007881 21 SALHIPVTGKQLHALALKSGQIHDVFV--GCSAFDMYSKTGLKDDADKMFDEMPERNLA--TWNAYISNAVLGGRPKNAI 96 (586)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~ 96 (586)
+..|+.+. .+.+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 34455544 444555676665432 344556666778877766666554333321 1123344556677766544
Q ss_pred HHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHh
Q 007881 97 DAFINLRRTGGEPD----LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV--CNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 97 ~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
.++ ..|...+ ..-. +.+...+..|+.+ +.+.+++.|..|+... ..+.+...+..|+.+-+..+++
T Consensus 86 ~Ll----~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 86 ELL----DLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHH----HcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 444 3332211 1112 2233333445543 4445556666554321 2234455566777776666665
Q ss_pred cCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 007881 171 GIIDK---NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD 212 (586)
Q Consensus 171 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 212 (586)
.-... |..-++.+..+ +..|+. ++++.+.+.|..|+.
T Consensus 157 ~g~~~~~~d~~g~TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~ 196 (413)
T PHA02875 157 HKACLDIEDCCGCTPLIIA-MAKGDI----AICKMLLDSGANIDY 196 (413)
T ss_pred cCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHhCCCCCCc
Confidence 44322 22233333332 333443 233444555655543
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.19 E-value=28 Score=36.19 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 007881 47 VGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL 126 (586)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 126 (586)
..+.+...+.+.|-.++|+.+--. ||- -.....+.|+++.|.++..+.. +..-|..|-.+..+.++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhccc
Confidence 445666666677766666544221 111 0112234455555555544321 33445555555555555
Q ss_pred hHHHHHHHHHH
Q 007881 127 LQLGRQLHGFL 137 (586)
Q Consensus 127 ~~~a~~~~~~~ 137 (586)
+..|.+.+...
T Consensus 682 l~lA~EC~~~a 692 (794)
T KOG0276|consen 682 LPLASECFLRA 692 (794)
T ss_pred chhHHHHHHhh
Confidence 55555555443
No 349
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.80 E-value=52 Score=25.83 Aligned_cols=80 Identities=9% Similarity=-0.071 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007881 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
...++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||..+|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 346677777777666652 233344444556778888888855555556678888776644 46777777777777776
Q ss_pred HCC
Q 007881 205 REG 207 (586)
Q Consensus 205 ~~g 207 (586)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 554
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.45 E-value=1.7e+02 Score=31.64 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHhccC---CC-CchhHH-----HHHHHHhhcCChHHHHHHHHHHH
Q 007881 396 YGKPELGRIAADNLFKLD---PN-DSGNHV-----LLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~---p~-~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.|+..+..........+. |+ ....|. .+...|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 577766555554444432 22 123332 44455778899999988887664
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.98 E-value=84 Score=27.87 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=56.1
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCChHHHHHHHHhCCCCCCHH--HHHHHHHHHH
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA-----CVVDLLGRAGLVDRAYEIIKEMPMRPTIS--VWGALLNACR 394 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~p~~~--~~~~ll~~~~ 394 (586)
...+...|++++|...++..... |....+. .|.......|.+++|+..++...- ++-. ....-...+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHH
Confidence 34566778888888777766421 2222332 344567778889999888886521 1111 1222234577
Q ss_pred HcCCHHHHHHHHHHHhccCCC
Q 007881 395 VYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~ 415 (586)
..|+-++|+..|++.++.++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 888888888888888887643
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.58 E-value=19 Score=32.25 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007881 355 ACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
+.-+..+.+.+++++|+...++- ..+| |...-..++.-++..|++++|..-++-+-++.|++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34456777888888888877664 4455 4455666778889999999999888888888887543
No 353
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=68.43 E-value=84 Score=27.70 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007881 216 SSVLSACARIAGLELGRSVHAVAVKACV--------------EGNIFVGSALVDMYGKCGSIQDAEIAFNK 272 (586)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 272 (586)
.+++..|.+..++.+++.++..+.+..+ .+--.+.|.-...+.++|.++.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3455566677777777777777665332 12233455556666666666666666653
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.24 E-value=25 Score=30.56 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccC
Q 007881 399 PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKG 451 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 451 (586)
+++|...|+++.+.+|.+......| .+. +.|-+++.++.+.+....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHhhhh
Confidence 5677888888888999875444333 333 357788888877766443
No 355
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.12 E-value=34 Score=31.06 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHH-------HHHHHHHHHhccC--CC----CchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 386 WGALLNACRVYGKPE-------LGRIAADNLFKLD--PN----DSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+--+...|+..|+.+ .|...|+++.+.+ |. ......+++.++.+.|+.++|.+.|.++...+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344444466666644 4555555555543 22 23566688889999999999999999998754
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.60 E-value=15 Score=26.98 Aligned_cols=47 Identities=4% Similarity=-0.000 Sum_probs=22.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHH
Q 007881 327 RAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEI 373 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 373 (586)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555543222222 23344555555555555555443
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.50 E-value=2.4e+02 Score=32.25 Aligned_cols=256 Identities=9% Similarity=-0.036 Sum_probs=139.1
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007881 166 KVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 166 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
..+...+..+|+..-..-+..+.+.+. +++...+..... .+|...-...+.++.+.+........+..+.+. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 345555567777777777777777665 345555555553 234444445555555443221122233333332 4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC 325 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~ 325 (586)
|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. + ..... .+|...-.....++
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l-~~~l~-----D~~~~VR~~aa~aL 766 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---V-AGAAT-----DENREVRIAVAKGL 766 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---H-HHHhc-----CCCHHHHHHHHHHH
Confidence 666666666666654321 12344555566777666667777776554332 2 22222 25555556666677
Q ss_pred hccCCHHH-HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007881 326 SRAGAVEK-GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 326 ~~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
...+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+-..+|..+-...+.++...+. +++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 76665442 3444444433 466777778888888888766554444444334565566666777776665 34555
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 405 AADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+..+++ +| +...-...+.++.+...-..+...+....+
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5555543 22 344555556666654323455555555544
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.47 E-value=11 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 421 VLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357888999999999999999988643
No 359
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.44 E-value=3.4 Score=39.42 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 007881 364 AGLVDRAYEIIKEM-PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (586)
.|.+++|++.|... +..|. ...|.-=.+++.+.++...|++-+..+++++|+...-|-.-..+....|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45566666666554 33332 33344444556666777777777777777777777667666666667777777777777
Q ss_pred HHHhCCCccCC
Q 007881 442 EMKDVGIKKGA 452 (586)
Q Consensus 442 ~m~~~g~~~~~ 452 (586)
...+.++.+..
T Consensus 207 ~a~kld~dE~~ 217 (377)
T KOG1308|consen 207 LACKLDYDEAN 217 (377)
T ss_pred HHHhccccHHH
Confidence 77777665554
No 360
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=17 Score=33.14 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=37.8
Q ss_pred CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 379 MRPTISVW-GALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 379 ~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.|+..+| ..=+-.+.+..+++.+..-..+++++.|+.......++........+++|...+.+..+
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444332 23333344455566666666666666666666666666666666666666666666543
No 361
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.71 E-value=89 Score=27.81 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=33.0
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 358 VDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
..++.+.+.++.|++-..+. .+.|.. .....-..+|.+...+++|+.-++++++.+|....+
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 34445555555555544443 233321 111112234566667788888888888888765433
No 362
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.82 E-value=84 Score=26.39 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=36.6
Q ss_pred ChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007881 176 NDVSWCSMLVVYVQNYE-EENGCQMFLTARREGVEPKDFMISSVLSACARI 225 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (586)
+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45567777777765555 344677888888877888888888888887665
No 363
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.42 E-value=1.6e+02 Score=29.24 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=49.3
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHhccCCC-CchhHHHHHHHHh-hcCChHHHHHHHHHHHh
Q 007881 382 TISVWGAL---LNACRVYGKPELGRIAADNLFKLDPN-DSGNHVLLSNMFA-ATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 445 (586)
|-..|.++ +..+.+.|-+..|.+..+-+..++|. |+..-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34444443 45578899999999999999999998 8877777788775 67888877777776554
No 364
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.17 E-value=20 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 403 RIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
...++...+.+|+|......++..+...|++++|.+.+-.+....
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345566677788888888888888888899998888888877643
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.89 E-value=30 Score=30.15 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccC
Q 007881 294 ADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAG 329 (586)
Q Consensus 294 ~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g 329 (586)
+++|+.-|++.+. +.|+ ..++..+..++...+
T Consensus 51 iedAisK~eeAL~----I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALK----INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHH
Confidence 3456666666666 4576 467777777665543
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.05 E-value=26 Score=36.28 Aligned_cols=97 Identities=14% Similarity=0.045 Sum_probs=59.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 007881 327 RAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 327 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a 402 (586)
-.|+...|...+.... ...|- -+....|.+.+.+.|...+|-.++.+. .+ ...+.++..+..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3466677777666554 33442 123334555666666666666666553 11 22345666677777777778888
Q ss_pred HHHHHHHhccCCCCchhHHHHHHH
Q 007881 403 RIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
++.++.+.+++|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888877777666555443
No 367
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.50 E-value=82 Score=24.79 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
..++|..|.+.+...+-. ...+.-.-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356777777777666542 33333334556778899999955545555688888876643 467888888888887766
Q ss_pred ccCCCCCCHHHH
Q 007881 307 MRCEAVPNYVTL 318 (586)
Q Consensus 307 ~~~g~~pd~~t~ 318 (586)
.| .|....|
T Consensus 98 --~g-~~~~q~F 106 (116)
T PF09477_consen 98 --SG-SPELQAF 106 (116)
T ss_dssp ---S-SHHHHHH
T ss_pred --CC-CHHHHHH
Confidence 33 3444444
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.41 E-value=91 Score=29.36 Aligned_cols=119 Identities=12% Similarity=0.024 Sum_probs=66.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHhcccCcHHHHHHHHH----HHHhCCCCchhHHHH
Q 007881 184 LVVYVQNYEEENGCQMFLTARREGVEPKDFM-------ISSVLSACARIAGLELGRSVHAV----AVKACVEGNIFVGSA 252 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~ 252 (586)
.+-.++.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+.... |..-.-+..+.+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445667788888888888888877666544 34455566666665443333222 111111223445556
Q ss_pred HHHHHHhc-CCHHHHHHHHhhCCC---C------CeeHHHHHHHHHHhcCCHHHHHHHHH
Q 007881 253 LVDMYGKC-GSIQDAEIAFNKMPE---R------NLVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 253 li~~~~~~-g~~~~A~~~~~~m~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
|++.+... ..++.-..+.....+ + -...-.-+|..+.+.|.+.+|+.+..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66665443 235555555544332 0 01122346778888888888887554
No 369
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.01 E-value=80 Score=24.98 Aligned_cols=27 Identities=4% Similarity=0.098 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999998876
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.79 E-value=37 Score=30.18 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007881 380 RPTISVWGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 380 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
.|+..+|..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555555555555555555555555
No 371
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.74 E-value=1.6e+02 Score=27.96 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHH-CCCCCChhhHHHHHHHHhcC--CChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChHHHHH
Q 007881 92 PKNAIDAFINLRR-TGGEPDLITFCAFLNACSDC--SLLQLGRQLHGFLVRS-GFDGNVSVCNGLVDFYGKCNEVGLAKV 167 (586)
Q Consensus 92 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~ 167 (586)
..+|+.+|+..-. ..+--|......+++..... ..+..--++.+.+... |-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666653211 22334556666666655441 1222233333334322 335666677777788888888888777
Q ss_pred HHhcC-----CCCChhhHHHHHHHHHHcCChHHHHHHH
Q 007881 168 VFDGI-----IDKNDVSWCSMLVVYVQNYEEENGCQMF 200 (586)
Q Consensus 168 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~ 200 (586)
+++.. +..|...|..+|......|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 77654 2347778888888888888776554444
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.35 E-value=2.1e+02 Score=29.05 Aligned_cols=134 Identities=9% Similarity=-0.060 Sum_probs=55.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhccc
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDK----NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFM--ISSVLSACARIA 226 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 226 (586)
+...++.|+.+.+..+++.-... +..-++.+. ..+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH-LATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHH-HHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 34445556666655555443211 111122222 22334443 33444455555543321 112233334455
Q ss_pred CcHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeH---HHHHHHHHHhcCCHH
Q 007881 227 GLELGRSVHAVAVKACVEGNIF--VGSALVDMYGKCGSIQDAEIAFNKMPERNLVC---WNAIIGGYAHQGHAD 295 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~ 295 (586)
+.+.+..+ .+.|..++.. ...+.+...+..|+.+-+.-+++.-..++... ..+.+..-+..|+.+
T Consensus 147 ~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~ 216 (413)
T PHA02875 147 DIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID 216 (413)
T ss_pred CHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH
Confidence 55443333 3444333221 11223334455677776666666544433221 123333334556554
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.21 E-value=1.1e+02 Score=28.88 Aligned_cols=18 Identities=6% Similarity=-0.080 Sum_probs=11.8
Q ss_pred HHHHHHcCChHHHHHHHH
Q 007881 184 LVVYVQNYEEENGCQMFL 201 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~ 201 (586)
|.+++..++|.+++...-
T Consensus 90 IQALAEmnrWreVLsWvl 107 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVL 107 (309)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 567777777777665443
No 374
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.50 E-value=2.6e+02 Score=29.87 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHCCCCCChhhH-HHHHHH-HhcCCChHHHHHHHHHHHH
Q 007881 92 PKNAIDAFINLRRTGGEPDLITF-CAFLNA-CSDCSLLQLGRQLHGFLVR 139 (586)
Q Consensus 92 ~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~-~~~~~~~~~a~~~~~~~~~ 139 (586)
...|+..++...+.|-.-..... .....+ .....+.+.|...++.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 34566777666655522111111 111112 3445667777777776655
No 375
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.37 E-value=3.3e+02 Score=31.15 Aligned_cols=254 Identities=9% Similarity=-0.017 Sum_probs=126.5
Q ss_pred HHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC
Q 007881 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN 145 (586)
Q Consensus 66 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 145 (586)
.+.+.+..+|...--..+..+.+.+.. +++..+...... +|...-...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 333444455555555555555555543 344444444331 2333223333333332211111122222222 245
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007881 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI 225 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (586)
..+-...+..+...+.- ....+...+..+|...=...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543321 12234444555665555555566555544322 11222 134555555666666666
Q ss_pred cCcHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007881 226 AGLEL-GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE-IAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 226 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..++...-...+.++...+. .++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 55432 2333333333 346777777888888888765543 33444445665555566677776665 456666666
Q ss_pred hhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007881 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 304 m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
+.+ .|+...-...+.++.+.+....+...+.....
T Consensus 846 ~L~-----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT-----DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc-----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 654 25666666777777775444566666666654
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.21 E-value=46 Score=25.03 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHH
Q 007881 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNA 95 (586)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 95 (586)
+.++++.+.+.|+ -+..-.+.+-..-...|+.+.|.++++.++ +....|...++++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777764 222233333332235577888888888888 7777788888888777765544
No 377
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.18 E-value=79 Score=29.09 Aligned_cols=56 Identities=9% Similarity=-0.054 Sum_probs=46.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.++...|++-++++....++...|.|..+|..-+.+.+..=+.++|..=|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 44556788889999999999999999999999888888877888888888877653
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.90 E-value=1.7e+02 Score=27.57 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=75.5
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHhHHHHHHHHHhcccCcH-HHH
Q 007881 158 KCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMF----LTARREGVEPKDFMISSVLSACARIAGLE-LGR 232 (586)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 232 (586)
+.+++++|.+++.. =...+.+.|+..-|-++- +-..+.++++|......++..+.....-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34556666655432 123344555554443332 22334456666665555555554443221 223
Q ss_pred HHHHHHHH---hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 007881 233 SVHAVAVK---AC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSM 307 (586)
Q Consensus 233 ~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (586)
.+...+++ .+ ..-++.....+...|.+.|++.+|+..|-.-.+++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 33333333 22 2346778888999999999999999887665444333332233222222222221
Q ss_pred cCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007881 308 RCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 308 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
|...-..++ -|...+++..|...++...++
T Consensus 141 ------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222222 355677888888877776654
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.05 E-value=25 Score=22.52 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=12.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 007881 183 MLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 380
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.52 E-value=2.3e+02 Score=28.80 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=29.2
Q ss_pred hHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007881 179 SWCSMLVVYVQ---NYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222 (586)
Q Consensus 179 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 222 (586)
.+..+++++.+ ..+++.|+..+..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34455555555 478888888888888888777655544444443
No 381
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.34 E-value=2.9e+02 Score=29.89 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=21.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcC---CCCChhhHHHHHHHHHHc
Q 007881 151 GLVDFYGKCNEVGLAKVVFDGI---IDKNDVSWCSMLVVYVQN 190 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~ 190 (586)
++|--+.|+|++++|.++..+. ..+....+-..+..|+.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 4566667777777777777222 222334445555555554
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.52 E-value=48 Score=29.45 Aligned_cols=54 Identities=11% Similarity=-0.052 Sum_probs=36.7
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
......+.+......+.+.+-....|+..+|..++..+...|+.++|.+..+++
T Consensus 117 ~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 117 LARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333555555555555554444455788888888888888888888888887777
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.08 E-value=92 Score=25.34 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 007881 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 375 (586)
+..+-+..... -.+.|++......+.||-+.+++..|.++|+-++.+ ..+....|..+++ +-..+++
T Consensus 67 EvrkglN~l~~--yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~---------elkpvl~ 133 (149)
T KOG4077|consen 67 EVRKGLNNLFD--YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK---------ELKPVLN 133 (149)
T ss_pred HHHHHHHhhhc--cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH---------HHHHHHH
Confidence 44455556655 678899999999999999999999999999988653 3444445666653 3445555
Q ss_pred hCCC
Q 007881 376 EMPM 379 (586)
Q Consensus 376 ~m~~ 379 (586)
++++
T Consensus 134 ELGI 137 (149)
T KOG4077|consen 134 ELGI 137 (149)
T ss_pred HhCC
Confidence 6543
No 384
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.07 E-value=29 Score=37.81 Aligned_cols=96 Identities=14% Similarity=0.207 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHH
Q 007881 291 QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRA 370 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 370 (586)
+.++++.+.+.+...- .| .++|..+.+.|-.+-|+.+.+.=..++ .....+|+++.|
T Consensus 606 ~k~ydeVl~lI~ns~L--vG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~a 662 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNL--VG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVA 662 (1202)
T ss_pred hhhhHHHHHHHHhcCc--cc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHH
Confidence 4567777666655433 22 134555667777777777665443322 234568888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007881 371 YEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 371 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
++.-.+.. |..+|..|......+|+.+.|+..+++....
T Consensus 663 le~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 663 LEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 88877764 6778999998888888888888888876553
No 385
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.86 E-value=1.6e+02 Score=26.26 Aligned_cols=89 Identities=10% Similarity=-0.033 Sum_probs=51.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh--HHHHHHHHHHcCChH
Q 007881 119 NACSDCSLLQLGRQLHGFLVRSGFDGN--VSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS--WCSMLVVYVQNYEEE 194 (586)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 194 (586)
..+...+++++|+.-++..+...-+.+ ..+--.|.......|.+++|+..++....++-.+ ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 345666777777777776654321111 1122234455666777777777777766554332 222335667777777
Q ss_pred HHHHHHHHHHHCC
Q 007881 195 NGCQMFLTARREG 207 (586)
Q Consensus 195 ~A~~~~~~m~~~g 207 (586)
+|..-|.+.+..+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777766654
No 386
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.48 E-value=3e+02 Score=29.39 Aligned_cols=108 Identities=11% Similarity=-0.051 Sum_probs=57.3
Q ss_pred chHHHHHhccCCC-CCcccHHHHH----HH-HHcCCChhHHHHHHHHHHH-------CCCCCChhhHHHHHHHHhcCC--
Q 007881 61 KDDADKMFDEMPE-RNLATWNAYI----SN-AVLGGRPKNAIDAFINLRR-------TGGEPDLITFCAFLNACSDCS-- 125 (586)
Q Consensus 61 ~~~A~~~~~~~~~-~~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 125 (586)
...|.++++.... .++..-..+. .+ +....+++.|+..|+...+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3456666665543 2332222222 23 5567888999999988866 44 3334445555555432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHhcC
Q 007881 126 ---LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK-CNEVGLAKVVFDGI 172 (586)
Q Consensus 126 ---~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~ 172 (586)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLA 354 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence 5566778887777777 3343333222222222 13445666666544
No 387
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.34 E-value=9.5 Score=38.32 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=65.7
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHH-HHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcC
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHY-ACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNACRVYG 397 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~ 397 (586)
-+......+.++.|..++..++ .+.|+...| ..-..++.+.+++..|+.=+.+. ...|+. ..|.-=..+|-..+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3455667788999999998887 457865444 33337778888888887666554 444442 23333345566677
Q ss_pred CHHHHHHHHHHHhccCCCCchhH
Q 007881 398 KPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
.+.+|+..++....+.|+++..-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHH
Confidence 88888888888888899876443
No 388
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.34 E-value=28 Score=19.65 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007881 397 GKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677778888888777777666665543
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.76 E-value=2.3e+02 Score=28.50 Aligned_cols=53 Identities=6% Similarity=-0.091 Sum_probs=32.8
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCHH--HHHHHHHHhh--ccCCHHHHHHHHHHhHH
Q 007881 288 YAHQGHADMALSSFEEMTSMRCEAVPNYV--TLVCVLSACS--RAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 343 (586)
+...+++..|.++|+.+.. . ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~--r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLR--R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHH--h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456778888888888876 3 444443 3344444443 35567778888777654
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.31 E-value=31 Score=25.31 Aligned_cols=45 Identities=7% Similarity=-0.019 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHH---HHHHHHhhcCChHHHHHH
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHV---LLSNMFAATGRWEEADLV 439 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 439 (586)
...+.+.|+..++++++..++.+.-+. .|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777766554444333 445556667777666654
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.20 E-value=66 Score=26.91 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007881 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
+.|.++.+-|+ .....-.........|++..|..+.+.+...+|+|...-...+++|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 55677777774 333444445556778999999999999999999999888888887765543
No 392
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.18 E-value=2.8e+02 Score=28.66 Aligned_cols=248 Identities=7% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---------CCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007881 132 QLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI---------IDKNDVSWCSMLVVYVQNYEEENGCQMFLT 202 (586)
Q Consensus 132 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (586)
++++..++. -|+...++..|..+...-....-..+...+ ......-+.-....+.......++...-..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Q ss_pred HHHCCCCCCHhHHHHHHHHHhcc--cCcHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCCHHHHHHHHhhCCCCCee
Q 007881 203 ARREGVEPKDFMISSVLSACARI--AGLELGRSVHAVAVKACVEGNIFVGSALV-DMYGKCGSIQDAEIAFNKMPERNLV 279 (586)
Q Consensus 203 m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~ 279 (586)
+...+++-+...|..-+....+. .---.-..++....+.-..+....+++.. ..+......+.....+..+..++..
T Consensus 381 l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~ 460 (568)
T KOG2396|consen 381 LTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSV 460 (568)
T ss_pred hhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCcee
Q ss_pred HH-HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007881 280 CW-NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358 (586)
Q Consensus 280 ~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 358 (586)
+. +..+.-+.+.|-..+|...+..+... .+...+..--..=+..-..+-++.-++.+++.|...+| .|+..|.-.+
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~ 537 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYM 537 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCCHH
Q 007881 359 DLLGRAGLVDRAYEIIKEM--PMRPTIS 384 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m--~~~p~~~ 384 (586)
..=...|..+.+-.++.+. .+.|...
T Consensus 538 ~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 538 KEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred HhhccCCCcccccHHHHHHHHhhChhhh
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.15 E-value=3.5e+02 Score=30.43 Aligned_cols=214 Identities=9% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHH---hCCCCChhhhHHHHHHHHhcCCc--hHHHHHhccCCC----CCcccHHH--
Q 007881 13 FPCLFKASSALHIPVTGKQLHALALK---SGQIHDVFVGCSAFDMYSKTGLK--DDADKMFDEMPE----RNLATWNA-- 81 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~----~~~~~~~~-- 81 (586)
|..|+-.|...|..++|.+++..... ..-..-...+-.++.-+.+.+.. +-.++.-+.... -.+..++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCCChhHHH
Q 007881 82 ----------YISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL-LQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 82 ----------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
-+-.|.....++-+...++.+....-.++..-.+.++..|+..-+ ......--++..+.+ +-
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~-------~r 659 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT-------VR 659 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh-------HH
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHH
Q 007881 151 GLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLEL 230 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 230 (586)
..+..+....+.=....+++........-..+++-+ +.|+.++|+.++-.... +++.
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~--rl~khe~aL~Iyv~~L~---------------------d~~~ 716 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLERLNGDELYEERAILLG--RLGKHEEALHIYVHELD---------------------DIDA 716 (877)
T ss_pred HHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHh--hhhhHHHHHHHHHHHhc---------------------chhH
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007881 231 GRSVHAVAVKACVEGNIFVGSALVDMY 257 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~ 257 (586)
|..+....-+ ..+++...|-.++..|
T Consensus 717 A~~Yc~~~y~-~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 717 AESYCLPQYE-SDKTNKEIYLTLLRIY 742 (877)
T ss_pred HHHHHHHhcc-CCCcccHHHHHHHHHH
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.01 E-value=1.3e+02 Score=29.01 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=11.0
Q ss_pred HHHHHHHHHhccCCCCch
Q 007881 401 LGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~ 418 (586)
.|.+...++.+.+|.-+.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 355666677777766443
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.81 E-value=19 Score=29.55 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=24.3
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 007881 87 VLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC 121 (586)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 121 (586)
-..|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667788899999999988875 66666654
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.97 E-value=1.1e+02 Score=23.16 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHH
Q 007881 259 KCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 297 (586)
..|+.+.|+++++.+. .....|...++++-..|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 6666777777777776665544
No 397
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.57 E-value=3.7e+02 Score=29.32 Aligned_cols=95 Identities=8% Similarity=-0.175 Sum_probs=51.7
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCChH
Q 007881 358 VDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLD---PNDSGNHVLLSNMFAATGRWE 434 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 434 (586)
+..+...|...+|...+..+....+......+.......|..+.+..........+ -.-+..|...+..+++.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34556677777777777666223455555555555667777777776665433211 011223555555555555566
Q ss_pred HHHHHHHHHHhCCCccCC
Q 007881 435 EADLVRKEMKDVGIKKGA 452 (586)
Q Consensus 435 ~a~~~~~~m~~~g~~~~~ 452 (586)
.+.-.---..+.+..|..
T Consensus 494 ~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 494 QSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 555433333466666653
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.10 E-value=1e+02 Score=24.42 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=23.3
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHH
Q 007881 78 TWNAYISNAVLGGRPKNAIDAFINLRR 104 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 104 (586)
-|..|+.-|-..|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588889899999999999999988866
No 399
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.61 E-value=1.9e+02 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC
Q 007881 252 ALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888888888888888775
No 400
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.00 E-value=1.8e+02 Score=26.58 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=45.5
Q ss_pred eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC---CHHHHH--HHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHH
Q 007881 279 VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP---NYVTLV--CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEH 353 (586)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p---d~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 353 (586)
.-.|.||--|.-+..+.+|.+.|..= .|+.| |..++. .-+......|+++.|++........ -+.-|...
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~e----~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l 101 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAKE----SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNREL 101 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhccc----cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhH
Confidence 34455555555554555555555432 33333 222222 3445556667777777766655322 22333222
Q ss_pred HHHHH----HHHHhcCChHHHHHHHHh
Q 007881 354 YACVV----DLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 354 ~~~li----~~~~~~g~~~~A~~~~~~ 376 (586)
+--|. --+.|.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 21111 124566777777777765
No 401
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.93 E-value=52 Score=24.66 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHH
Q 007881 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNA 95 (586)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 95 (586)
...+++.+++.|+- +....-...+...+.+.|.++++.++.+...+|.+...++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34577777776642 2222333334556778888888888888888888888888777765443
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.81 E-value=1.1e+02 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007881 95 AIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRS 140 (586)
Q Consensus 95 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 140 (586)
..+-++.+....+.|++...-..|++|.+.+|+..|..+++-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444556666778899999999999999999999999998876544
No 403
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.53 E-value=2.4e+02 Score=25.98 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHH
Q 007881 253 LVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE 332 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~ 332 (586)
-+..|++.-++.-|-..++++.+|- .+-.+++ -|.+..+..---++.+-... .++.-+......++ +...|+..
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPI-QSRCAiL-Rysklsd~qiL~Rl~~v~k~--Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPI-QSRCAIL-RYSKLSDQQILKRLLEVAKA--EKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhH-HhhhHhh-hhcccCHHHHHHHHHHHHHH--hCCCCCcchHHHhh--hhccchHH
Confidence 4667777777777777777776641 1111221 23333332222233333333 44544444444443 45678888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007881 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
+|+.-++.-...+|..- +..+|+-. ..|.+.....++..|.. +++++|.+.+.++.++
T Consensus 210 QalNnLQst~~g~g~Vn--------------------~enVfKv~-d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 210 QALNNLQSTVNGFGLVN--------------------QENVFKVC-DEPHPLLVKKMLQACLK-RNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHHHhccccccc--------------------hhhhhhcc-CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHc
Confidence 88888877665433221 12223222 24666666666666543 4677777777777776
Q ss_pred C
Q 007881 413 D 413 (586)
Q Consensus 413 ~ 413 (586)
+
T Consensus 268 g 268 (333)
T KOG0991|consen 268 G 268 (333)
T ss_pred C
Confidence 6
No 404
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.74 E-value=1.6e+02 Score=23.79 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCchhHH----HHHHHHhhcCChHHHHHHHHHH
Q 007881 383 ISVWGALLNACRVYGKPELGRIAADNLF-------KLDPNDSGNHV----LLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 443 (586)
...+..|-.++...|++++++.-.++.+ ++..+....|. .-+.++...|+.++|...|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4455556666666776666555444443 34444443333 3344567889999999988764
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.67 E-value=1.4e+02 Score=24.42 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcc--CCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 401 LGRIAADNLFKL--DPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 401 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
.+..+|..|... +...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777788887764 456677888889999999999999999875
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.84 E-value=70 Score=24.43 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=32.8
Q ss_pred HHcCCHHHHHHHHHHHhccCCC----C-----chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 394 RVYGKPELGRIAADNLFKLDPN----D-----SGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+.|++..|.+.+.+..+.... . ......++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666666655555543211 1 12334566777888999999999888765
No 407
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.73 E-value=28 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007881 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 222 (586)
-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4456778899999999999998885 56666543
No 408
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.27 E-value=2.9e+02 Score=26.00 Aligned_cols=105 Identities=12% Similarity=-0.028 Sum_probs=49.3
Q ss_pred hcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHH----HHHHCCCCCChhhHHHHHHHHhcCCChH-HHH
Q 007881 57 KTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFI----NLRRTGGEPDLITFCAFLNACSDCSLLQ-LGR 131 (586)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 131 (586)
+.+++++|..++.. =...+.+.|+...|.++-. .+.+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34556666655532 1224556666655555433 3334566666665555555544433211 122
Q ss_pred HHHHHHHH---hCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007881 132 QLHGFLVR---SGF--DGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 132 ~~~~~~~~---~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
++.+.+++ .|- .-+......+...|.+.|++.+|+.-|=.-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 23333332 221 225667777777788888887777766443
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.18 E-value=46 Score=31.65 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISS 217 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 217 (586)
-||..|..-++.|++++|++++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467788888888888888888888888886554444433
No 410
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.98 E-value=3.2e+02 Score=26.42 Aligned_cols=97 Identities=15% Similarity=0.011 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007881 330 AVEKGMKIFYSMTLKYGI---KPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAA 406 (586)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 406 (586)
-.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+++...+.+.-..++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367888889888753111 34556666777777888887766666665555567888889999998888999888899
Q ss_pred HHHhccC-CCCchhHHHHHHH
Q 007881 407 DNLFKLD-PNDSGNHVLLSNM 426 (586)
Q Consensus 407 ~~~~~~~-p~~~~~~~~l~~~ 426 (586)
+.+..-+ ......+..+...
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHH
Confidence 9888843 2223344444444
No 411
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.42 E-value=52 Score=31.20 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=20.5
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
+.|+.+.|..+|+.++.+.|.++....-++.......++-+|.++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~ 172 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC 172 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence 344555555555555555555544444444433333333333333
No 412
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=41.57 E-value=3.2e+02 Score=26.05 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=41.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHH
Q 007881 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFE 302 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (586)
-.++..+...++..+++.+++.+-.++++.... .|...|..+|......|+..-...+..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445666666777777777777777777776432 577778888888888887765555444
No 413
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.41 E-value=99 Score=20.14 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=19.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007881 188 VQNYEEENGCQMFLTARREGVEPKDFMISSVL 219 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 219 (586)
.+.|...++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 45555666666666666666666655555544
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.10 E-value=59 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|..-...++.++...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334455556666666666666655554
No 415
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.09 E-value=3.3e+02 Score=26.03 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 249 VGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+.+.....|..+|.+.+|.++-+.... -+...|-.++..++..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556788999999999999998775 4567788899999999998888887777754
No 416
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.93 E-value=1.7e+02 Score=28.33 Aligned_cols=89 Identities=16% Similarity=0.044 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM-P---MRP--TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
|--=.+-|.+..++..|...|.+- . -.| +.+.|+.=..+-...|++..++.-..+++..+|.+...|..-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333345677888888898888775 1 123 4566766666667778999999999999999999888888877777
Q ss_pred hhcCChHHHHHHHHH
Q 007881 428 AATGRWEEADLVRKE 442 (586)
Q Consensus 428 ~~~g~~~~a~~~~~~ 442 (586)
....++++|....+.
T Consensus 164 ~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 164 LELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777776666655444
No 417
>PRK10941 hypothetical protein; Provisional
Probab=40.84 E-value=2.9e+02 Score=26.20 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHH
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEH 353 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 353 (586)
+.+-.+|.+.++++.|+.+.+.+.. +.|+ ..-+.--.-.|.+.|.+..|..=++...+...-.|+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ----FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3444555666666666666666655 2343 223333334455556666665555555443333333333
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.80 E-value=91 Score=20.32 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007881 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGL 152 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (586)
|-++++..+++.|.+.|+..+...+..+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 3344444444444444444444444433
No 419
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.87 E-value=86 Score=18.98 Aligned_cols=18 Identities=17% Similarity=-0.079 Sum_probs=8.3
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 007881 388 ALLNACRVYGKPELGRIA 405 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~ 405 (586)
.+...+-..|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333444455555555555
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.66 E-value=65 Score=22.40 Aligned_cols=28 Identities=29% Similarity=0.156 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 350 GAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
|-...-.+|.+|...|++++|.++++++
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444556778888888888888887765
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.58 E-value=1.2e+02 Score=31.84 Aligned_cols=84 Identities=13% Similarity=0.037 Sum_probs=65.7
Q ss_pred cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 007881 364 AGLVDRAYEIIKEM-PMRP--TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
.|+...|...+... ..+| ..+....|.....+.|-...|-.++.+.+.+.-..+-++..++++|.-..+++.|.+.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 58888888877766 3333 22344556666677777788888999988888777889999999999999999999999
Q ss_pred HHHHhCC
Q 007881 441 KEMKDVG 447 (586)
Q Consensus 441 ~~m~~~g 447 (586)
+...+..
T Consensus 700 ~~a~~~~ 706 (886)
T KOG4507|consen 700 RQALKLT 706 (886)
T ss_pred HHHHhcC
Confidence 9887653
No 422
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.48 E-value=3.1e+02 Score=25.35 Aligned_cols=81 Identities=9% Similarity=-0.014 Sum_probs=49.1
Q ss_pred HHhcCCHHHHHHHHhhCC--CCCeeH-HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHhhccCCHH
Q 007881 257 YGKCGSIQDAEIAFNKMP--ERNLVC-WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVT-LVCVLSACSRAGAVE 332 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t-~~~ll~a~~~~g~~~ 332 (586)
|....+++.|...|.+.. .|++.+ |+.-+.++.+..+++.+..--++.++ +.||.+- .-.+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhcccc
Confidence 444556777777666544 365533 45566677777777777776666655 4566543 333444555666677
Q ss_pred HHHHHHHHh
Q 007881 333 KGMKIFYSM 341 (586)
Q Consensus 333 ~a~~~~~~~ 341 (586)
+|+..+++.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 777776655
No 423
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.28 E-value=2.8e+02 Score=24.66 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=17.3
Q ss_pred cCCCCCCcccHHHHHHHHhcCCCc
Q 007881 3 RECISPNDFTFPCLFKASSALHIP 26 (586)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~~~~~ 26 (586)
+.|..+|...++.+++.+....-.
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s 24 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQAS 24 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCc
Confidence 357788888888888877655433
No 424
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.09 E-value=9.1e+02 Score=30.61 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=80.5
Q ss_pred HHhcCCCchHHHHHHHHH----HHhCCCCChhhhHHHHHHHHhcCCchHHHHHhc-cCCCCCcccHHHHHHHHHcCCChh
Q 007881 19 ASSALHIPVTGKQLHALA----LKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFD-EMPERNLATWNAYISNAVLGGRPK 93 (586)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 93 (586)
+--+.+.+..|...++.- .+. ......|-.+...|+.-+++|...-+.. ....|+. ..-|-.....|++.
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWA 1466 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHH
Confidence 344555566666665552 111 0112233444447777777776665555 2333332 22344556678888
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhcCChHHHHHHHhc
Q 007881 94 NAIDAFINLRRTGGEPD-LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNG-LVDFYGKCNEVGLAKVVFDG 171 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-ll~~~~~~g~~~~A~~~~~~ 171 (586)
.|...|+++...+ |+ ..+++.++......+.++...-..+-.... ..+....+++ =+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 8888888887643 44 556776776666666666555433322222 1222222222 2334456666666655544
Q ss_pred CCCCChhhHHHH
Q 007881 172 IIDKNDVSWCSM 183 (586)
Q Consensus 172 ~~~~~~~~~~~l 183 (586)
..+..+|.+.
T Consensus 1543 --~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE 1552 (2382)
T ss_pred --cccccchhHH
Confidence 4455556554
No 425
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=38.94 E-value=22 Score=35.56 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=82.1
Q ss_pred CCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHH-HH-HHHHhcCCchHHHHHhccCCC--CCc---
Q 007881 4 ECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCS-AF-DMYSKTGLKDDADKMFDEMPE--RNL--- 76 (586)
Q Consensus 4 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li-~~~~~~g~~~~A~~~~~~~~~--~~~--- 76 (586)
.|+.||.++|.+=..+--+.-....|+..++.++ ||...-.. .- ..-...|.-..-+++|+.+.- |.+
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ 483 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEM 483 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHH
Confidence 5778888888766555555556667777776664 33332221 00 011122344556788887753 322
Q ss_pred -------ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc------CCChHHHHHHHHHHHHhCCC
Q 007881 77 -------ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD------CSLLQLGRQLHGFLVRSGFD 143 (586)
Q Consensus 77 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~------~~~~~~a~~~~~~~~~~g~~ 143 (586)
.-|+.|..++.++-.+.+ +.+=.+|...|-.-+.++. +|.+ ..+..++.++-.+.+-.-+.
T Consensus 484 ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im-----~~Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 484 CTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIM-----ILGKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred hhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEe-----eeccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 247778887777655531 1222334333322233222 2221 23456677777766655578
Q ss_pred CChhHHHHHHHHHHhc
Q 007881 144 GNVSVCNGLVDFYGKC 159 (586)
Q Consensus 144 ~~~~~~~~ll~~~~~~ 159 (586)
|...+|.+|+++|.+.
T Consensus 558 Ph~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 558 PHLLTWGSLLRIYGRL 573 (650)
T ss_pred HHhhhHHHHHHHhhhh
Confidence 9999999999999886
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.79 E-value=50 Score=31.40 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 007881 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGE 108 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 108 (586)
||..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 455566666666666666666666555544
No 427
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.57 E-value=4e+02 Score=26.31 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=61.6
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH--------hcCCh--------HHHHHHHhcCCCCChhhHHHHH
Q 007881 121 CSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYG--------KCNEV--------GLAKVVFDGIIDKNDVSWCSML 184 (586)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--------~~g~~--------~~A~~~~~~~~~~~~~~~~~li 184 (586)
|...++++.|+.++...+.. |...+-...+.+|- -.|++ ..|.+.|+-|.. .|..+.
T Consensus 193 ciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~----pY~ef~ 265 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSN----PYHEFL 265 (422)
T ss_pred eeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCc----hHHHHH
Confidence 45567888888888777643 33333333444443 23443 344455554432 244444
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH----HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHH----HH
Q 007881 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLS----ACARIAGLELGRSVHAVAVKACVEGNIFVGSALV----DM 256 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~ 256 (586)
.+|.+...-+ ..+++. .+.+-++...+.+....+.++.+..=..+|.+|= .-
T Consensus 266 ~~Y~~~~~~e--------------------Lr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~ 325 (422)
T KOG2582|consen 266 NVYLKDSSTE--------------------LRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIAS 325 (422)
T ss_pred HHHhcCCcHH--------------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444332211 222222 2334455666666666666655554455555542 22
Q ss_pred HHhcCCHHHHHHHHhhCC
Q 007881 257 YGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~ 274 (586)
....+.-++|.+..-+|.
T Consensus 326 ~vQLa~~qevek~Ilqmi 343 (422)
T KOG2582|consen 326 RVQLASAQEVEKYILQMI 343 (422)
T ss_pred HHHhcchHHHHHHHHHHh
Confidence 224455555555444443
No 428
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=38.38 E-value=4.4e+02 Score=26.78 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=42.1
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007881 83 ISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEV 162 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 162 (586)
|+++...| ..++..+....... ++...+.....++....+......+.+.+ -.++..+....+.++.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCch
Confidence 56666666 44555555554322 22222333333333222222122222222 133444566666666666555
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHH
Q 007881 163 GLAKVVFDGIIDKNDVSWCSMLVVYV 188 (586)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~li~~~~ 188 (586)
.....+...+..+++..-.+.+.++.
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 55444444444444433333334433
No 429
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=38.06 E-value=3.1e+02 Score=29.36 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=22.6
Q ss_pred CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007881 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 211 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 273 (586)
+......++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+.++|+......+-+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555666666666666666666544433222 123334445556666665555544443
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.05 E-value=1.2e+02 Score=23.09 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccC
Q 007881 389 LLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
+.......|++++|...+++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444667788888888888887753
No 431
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.36 E-value=3.4e+02 Score=25.08 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=9.3
Q ss_pred hccCCHHHHHHHHHHhH
Q 007881 326 SRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~ 342 (586)
+..+++.+|+.+|+++.
T Consensus 165 a~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455556666665554
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.80 E-value=2e+02 Score=23.88 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHhcCCh---HHHHHHHHhC-C-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007881 348 KPGAEHYACVVDLLGRAGLV---DRAYEIIKEM-P-MRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
.++..+--.+..++.+..+. .+-+.++++. + ..|+ -....-|.-++.+.++++.++++.+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 34444444455555554433 3344455544 2 2222 233344556688889999999999999998888753
No 433
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.48 E-value=73 Score=29.02 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=23.6
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 364 AGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
.|+.+.|.+++.+. ...| ....|-.+...--+.|+.+.|.+.+++.++++|+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34444444444443 2222 2334444444444555555555555555554444
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.98 E-value=1.4e+02 Score=27.73 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=6.8
Q ss_pred HHHHcCCChhHHHHHH
Q 007881 84 SNAVLGGRPKNAIDAF 99 (586)
Q Consensus 84 ~~~~~~g~~~~A~~~~ 99 (586)
++|...|++.+|++-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3444444444444433
No 435
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.66 E-value=2.3e+02 Score=23.77 Aligned_cols=62 Identities=8% Similarity=-0.016 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007881 199 MFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 199 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
+.+.+.+.|++++.. -..++..+...+..-.|.++|..+.+.++..+..|--.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344556777776543 34566777777777889999999998887776555444455555555
No 436
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.50 E-value=90 Score=23.72 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCC
Q 007881 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGR 91 (586)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 91 (586)
...+++.+++.|+-.+. ..-...+...+.+.+.++++.++.+...+|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvlt~~----~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDILTDS----MAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34566677666642221 222223344567778888888887777788888777765544
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.50 E-value=2.1e+02 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 007881 359 DLLGRAGLVDRAYEIIKEMPMRPTISVW 386 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 386 (586)
-.|.+.|.+++|.+++++.--.|+....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 3466667777777777665224444333
No 438
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=35.43 E-value=4.9e+02 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
+-...+.++.+.|+...+--+.+.|.
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 34445556666666655555554443
No 439
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.29 E-value=1.7e+02 Score=31.24 Aligned_cols=74 Identities=7% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHH------HHHHHHHHhHHhcCCCCChHHHHH
Q 007881 283 AIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE------KGMKIFYSMTLKYGIKPGAEHYAC 356 (586)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~------~a~~~~~~~~~~~~~~p~~~~~~~ 356 (586)
+++.+|..+|++-.+.++++.......|-+.=...||..|+...+.|.++ .|.+.++.. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 67777888888888877777777643443333455666677777777543 333333333 34556666666
Q ss_pred HHHH
Q 007881 357 VVDL 360 (586)
Q Consensus 357 li~~ 360 (586)
|+++
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 6554
No 440
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.57 E-value=6.2e+02 Score=27.06 Aligned_cols=101 Identities=5% Similarity=-0.029 Sum_probs=54.3
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCCCCC-cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 007881 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMPERN-LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNAC 121 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 121 (586)
+....++.|+..+.. =+.++-.++++++.. . ...|..++++....|-.....-+.+.+....+. +...-..+..+.
T Consensus 308 ~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~~~~ 384 (574)
T smart00638 308 PAAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLAVLP 384 (574)
T ss_pred chHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 345567777777643 345666677776654 3 567888899999888765544444444443333 333222233322
Q ss_pred --hcCCChHHHHHHHHHHHHhCCCCCh
Q 007881 122 --SDCSLLQLGRQLHGFLVRSGFDGNV 146 (586)
Q Consensus 122 --~~~~~~~~a~~~~~~~~~~g~~~~~ 146 (586)
...-..+....+++.+......+..
T Consensus 385 ~~~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 385 HTARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred HhhhcCCHHHHHHHHHHhcCccccccH
Confidence 2334444444444444333344444
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.41 E-value=1.6e+02 Score=24.74 Aligned_cols=42 Identities=7% Similarity=-0.028 Sum_probs=17.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007881 119 NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCN 160 (586)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 160 (586)
..+...++.-.|.++|+.+.+.+...+..|--.-++.+...|
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 28 ELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333333333445555555555443333333222334444444
No 442
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.19 E-value=3.3e+02 Score=23.79 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=15.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHH
Q 007881 320 CVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
.-|.-|.+.|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445556667777777777766643
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.16 E-value=3.9e+02 Score=24.52 Aligned_cols=119 Identities=12% Similarity=0.175 Sum_probs=66.3
Q ss_pred HHHHHHH--hcCCHHHHHHHHhhCCCCCeeHH--HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007881 252 ALVDMYG--KCGSIQDAEIAFNKMPERNLVCW--NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 252 ~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
.++++|. ..+++++|.+.+-.- .+..| .-++.++...|+.+.|+.+++.+.- .. .+......++.+ ..
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p--~l--~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGP--PL--SSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCC--CC--CCHHHHHHHHHH-HH
Confidence 3445443 346677777776443 22211 2377888888999999998887644 22 222233333333 45
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 007881 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPT 382 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 382 (586)
.+.+.+|..+-+..... -....+..++..+.....-....+.+-.+|+.+.
T Consensus 153 ~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEE 203 (226)
T ss_pred cCCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChH
Confidence 57888888877665331 1134666666666544432333444445565543
No 444
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.81 E-value=2.3e+02 Score=27.14 Aligned_cols=53 Identities=8% Similarity=-0.005 Sum_probs=34.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007881 151 GLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
.++..+.+.+++......+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555555555555555555442 233344567778889999999998877765
No 445
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=32.27 E-value=3.9e+02 Score=24.34 Aligned_cols=161 Identities=11% Similarity=-0.009 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 007881 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG-FDGNVSVCNGLVDF 155 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~ 155 (586)
..||-|.--+...|+++.|.+.|+...+..+.-+-...|.-|. +.-.|++..|.+-+-..-+.. -+|-...|--|..
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 3577776667777888888888877766443322222222222 233467777766555544442 1222223322221
Q ss_pred HHhcCChHHHHHH-HhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------HhHHHHHHHHHhcccC
Q 007881 156 YGKCNEVGLAKVV-FDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK-------DFMISSVLSACARIAG 227 (586)
Q Consensus 156 ~~~~g~~~~A~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~~~ 227 (586)
+.-+..+|..- .++....|..-|..-|-.|.-..-.+++ +|++.... -.-+ ..||--+..-+...|+
T Consensus 178 --~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~--l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEET--LMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHH--HHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22344444433 3344444555555544444322222221 22332221 1111 2356667777778888
Q ss_pred cHHHHHHHHHHHHhCCC
Q 007881 228 LELGRSVHAVAVKACVE 244 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~ 244 (586)
+++|..+|...+..++-
T Consensus 253 ~~~A~~LfKLaiannVy 269 (297)
T COG4785 253 LDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 88888888877776543
No 446
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=32.26 E-value=2.8e+02 Score=22.65 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHH
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWG-ALLNACRVYGKPELGR 403 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~~~~~~a~ 403 (586)
+-.++..++.-.|..++|.++++....-++....| -++..|....+.++-.
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~ 119 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVI 119 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 33444455555555555555555554333333222 2444444444444333
No 447
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.16 E-value=1.1e+02 Score=24.08 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=8.1
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 007881 184 LVVYVQNYEEENGCQMFLT 202 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~ 202 (586)
+..|...|+.++|..-+++
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444443
No 448
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=31.87 E-value=1.6e+02 Score=23.17 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=45.1
Q ss_pred hhhhhHHHHHHHHHhcccCCCCCCcEEEEecccccCCcchhhHhhccccCceEEEecCC
Q 007881 512 MTEVGHHSEKIALAFGLIAIPPGVPIRITKNLRICGDCHSAFKFISGIVGREVIVRDNN 570 (586)
Q Consensus 512 ~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~ 570 (586)
+..+.-|.|.-++--=-.+..+|..+.|.--++-|..|..+|.-.+.-.|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 34567788877664433333448888888889999999999999999999988877643
No 449
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.77 E-value=4.5e+02 Score=28.13 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 007881 96 IDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFL 137 (586)
Q Consensus 96 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 137 (586)
....+.+..+-+-.+.....-++..|.+.|-.+.+..+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333344433323334445555555566655555555555443
No 450
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.68 E-value=4.4e+02 Score=24.76 Aligned_cols=156 Identities=8% Similarity=-0.036 Sum_probs=82.8
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh-----HHHHHHHHHHHHhCCCCChhHHHHH
Q 007881 78 TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL-----QLGRQLHGFLVRSGFDGNVSVCNGL 152 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l 152 (586)
-.+.+|+.+.+.+....|+.+.+.+... +-=....-.++......... ......+...++.= .. ...|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~-f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QE-FPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-Hc-CcchHHH
Confidence 3566788888888888888888777542 21122333333332211111 11122222222210 11 1224444
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC-----CHhHHHHHHHHHhccc
Q 007881 153 VDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VEP-----KDFMISSVLSACARIA 226 (586)
Q Consensus 153 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-----~~~t~~~ll~~~~~~~ 226 (586)
+..|.|.=+...-..+|+....| ..+..-|.+.|+.+.|-.++--+...+ ... +.....-++......+
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 55555555566666677765322 356777788888888877666554332 111 2233444566666777
Q ss_pred CcHHHHHHHHHHHHhC
Q 007881 227 GLELGRSVHAVAVKAC 242 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~ 242 (586)
+++.+.++.+-+...+
T Consensus 235 ~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 235 DWDLCFELVRFLKALD 250 (258)
T ss_pred cHHHHHHHHHHHHHhC
Confidence 7777777777666544
No 451
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=31.15 E-value=22 Score=24.99 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.2
Q ss_pred ceEEEecCCccceecccccccC
Q 007881 562 REVIVRDNNRFHRFWDGYCSCS 583 (586)
Q Consensus 562 ~~~~~~~~~~~h~~~~g~~~~~ 583 (586)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4677889999999999997643
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.11 E-value=1.6e+02 Score=25.57 Aligned_cols=33 Identities=18% Similarity=0.016 Sum_probs=13.8
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 007881 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
++.-.|.++++.+.+.+..++..|.-..|..+.
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~ 71 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLL 71 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 333444444444444444444444333333333
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.72 E-value=2.9e+02 Score=22.39 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCC---------CHHHHHHHHHHhhccCCHHHHHH
Q 007881 290 HQGHADMALSSFEEMTSMRCEAVP---------NYVTLVCVLSACSRAGAVEKGMK 336 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~p---------d~~t~~~ll~a~~~~g~~~~a~~ 336 (586)
+.|.+++|..-+++..+....++| |...+..|-.++...|++++++.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHH
Confidence 356677776666555443233433 33455566666777777665544
No 454
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.52 E-value=1.2e+02 Score=24.17 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=30.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 007881 82 YISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 127 (586)
++..+...+.+-.|-++++.+.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555566667777888887777666776666666666665543
No 455
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.39 E-value=6.8e+02 Score=26.52 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC-CchhHHHHHHHHh-hcCChHHHHHHHHHHH
Q 007881 391 NACRVYGKPELGRIAADNLFKLDPN-DSGNHVLLSNMFA-ATGRWEEADLVRKEMK 444 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 444 (586)
..+.+.|-+.-|.+..+.+++++|. ||.....+++.|+ ++.+++=-.++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456778888888888888888887 7777777777775 4556665666666553
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.95 E-value=3.1e+02 Score=22.37 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHH
Q 007881 333 KGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 375 (586)
.+.++|..|..+ |+--. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666777777554 55443 5566666777777777777777765
No 457
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.86 E-value=6.6e+02 Score=26.17 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=13.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCh
Q 007881 88 LGGRPKNAIDAFINLRRTGGEPDL 111 (586)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~g~~p~~ 111 (586)
+.++++.|+.++.+|...|..|..
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~ 278 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEV 278 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 345666666666666665555443
No 458
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.62 E-value=5.2e+02 Score=24.91 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhcCCHHHH
Q 007881 248 FVGSALVDMYGKCGSIQDA 266 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A 266 (586)
..|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3555566666666655443
No 459
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.28 E-value=5.3e+02 Score=24.86 Aligned_cols=28 Identities=14% Similarity=-0.074 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
...-..++.+.+...+.+...++++...
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l 228 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLL 228 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHc
Confidence 3334444444444444444444444443
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.09 E-value=2.8e+02 Score=29.70 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC------CCeeHHHHHHHHHHhcCCHH--HHHHHHHHhhhccCCCCCCHHHHHHHHH
Q 007881 252 ALVDMYGKCGSIQDAEIAFNKMPE------RNLVCWNAIIGGYAHQGHAD--MALSSFEEMTSMRCEAVPNYVTLVCVLS 323 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~g~~pd~~t~~~ll~ 323 (586)
+|..+|...|++-.+.++++.... .-...+|..|..+.+.|.++ +..+-..+..+. ..+.-|..||..++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~-a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ-ARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-hhcCCcchHHHHHHH
Confidence 789999999999999999988753 23457888899999999764 334444444442 446678889988887
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc--CChHHHHHHHHhC
Q 007881 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA--GLVDRAYEIIKEM 377 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m 377 (586)
+-...-.-..+.-++.+.... .-|.+++.+... =.+++.--+.+++
T Consensus 112 ~sln~t~~~l~~pvl~~~i~~--------s~ngv~di~~~~~v~s~~ev~limd~l 159 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIHR--------SANGVIDILMHESVFSPEEVKLIMDQL 159 (1117)
T ss_pred hhcChHhHHhccHHHHHHHHh--------hhhhHHHHHhhhccCCHHHHHHHHHhc
Confidence 766654445555555555432 223344444332 3456666666666
No 461
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.92 E-value=6.6e+02 Score=25.92 Aligned_cols=21 Identities=0% Similarity=-0.221 Sum_probs=12.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCC
Q 007881 255 DMYGKCGSIQDAEIAFNKMPE 275 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~ 275 (586)
...+..|..+-+..+++.-..
T Consensus 255 ~~A~~~~~~~iv~~Ll~~gad 275 (480)
T PHA03100 255 HYAVYNNNPEFVKYLLDLGAN 275 (480)
T ss_pred HHHHHcCCHHHHHHHHHcCCC
Confidence 344556777666666655443
No 462
>PF14044 NETI: NETI protein
Probab=28.90 E-value=51 Score=22.30 Aligned_cols=16 Identities=31% Similarity=0.629 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCcccC
Q 007881 483 LTKLREEMKAAGYIPD 498 (586)
Q Consensus 483 ~~~l~~~m~~~g~~pd 498 (586)
+.+.+.+|++.||.|-
T Consensus 10 I~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPV 25 (57)
T ss_pred HHHHHHHHHHcCCCce
Confidence 4588899999999984
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.60 E-value=6.1e+02 Score=25.42 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=7.5
Q ss_pred hcCChHHHHHH
Q 007881 429 ATGRWEEADLV 439 (586)
Q Consensus 429 ~~g~~~~a~~~ 439 (586)
..|++++|.-.
T Consensus 258 ~~~ry~da~~r 268 (380)
T TIGR02710 258 TQGRYDDAAAR 268 (380)
T ss_pred HccCHHHHHHH
Confidence 56788777643
No 464
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.88 E-value=9e+02 Score=27.15 Aligned_cols=311 Identities=14% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 007881 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEE 193 (586)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 193 (586)
|..++..=.+.+......++|..+-+. -.+...-.--|.-..+.|+++.|..++++.... +...++.
T Consensus 330 FaeFL~~r~~~~~~~~~~~lH~~Aa~w--~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~-----------L~~~~~l 396 (894)
T COG2909 330 FAEFLRQRLQRELAARLKELHRAAAEW--FAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQ-----------LFNGSEL 396 (894)
T ss_pred HHHHHHhhhccccCCchhHHHHHHHHH--HHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhh-----------hhcccch
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH--------HhcCCHHH
Q 007881 194 ENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMY--------GKCGSIQD 265 (586)
Q Consensus 194 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--------~~~g~~~~ 265 (586)
.--+...+.+...-+.-++.....-.-......++++|..+..++...-..|+......+.-.+ ...|++++
T Consensus 397 sll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~ 476 (894)
T COG2909 397 SLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEE 476 (894)
T ss_pred HHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHH
Q ss_pred HHHHHhhCCC--------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH-----hhccC--C
Q 007881 266 AEIAFNKMPE--------RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA-----CSRAG--A 330 (586)
Q Consensus 266 A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a-----~~~~g--~ 330 (586)
|.++-+...+ ..++.+..+..+..-.|++++|..+.++..+ ..-.-|...|...... +...| .
T Consensus 477 a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~--~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 477 AEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ--MARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH--HHHHcccHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHH--HHHHHHHHc
Q 007881 331 VEKGMKIFYSMTLKYGIKPGA-----EHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPTISVWG--ALLNACRVY 396 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~--~ll~~~~~~ 396 (586)
..+....|......+...... .++..+..++.+ ++.+..-.... ...|-..... .|.......
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~ 631 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR 631 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHhccCCCC-------chhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 397 GKPELGRIAADNLFKLDPND-------SGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
|+.+.|.....++..+--+. ...+..-...-...|+.+.+.....+
T Consensus 632 Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 632 GDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
No 465
>PRK09169 hypothetical protein; Validated
Probab=27.74 E-value=1.4e+03 Score=29.19 Aligned_cols=435 Identities=13% Similarity=0.015 Sum_probs=235.1
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHh-------CCCCChhhhHHHHHHHHhcCCchHHHHHhccCC-----C---
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKS-------GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP-----E--- 73 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~--- 73 (586)
|...+..+|.++++-.+-..+...-..+-.. -...+......++++++|--+-......-+.+. +
T Consensus 161 ~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l 240 (2316)
T PRK09169 161 DAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGL 240 (2316)
T ss_pred hhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHH
Confidence 4556677777777766555444443333111 012344445566777777655444333322221 1
Q ss_pred ---CCcccHHHHHHHHHcCCChhHHHHHHHHH----HHC-C--CCCChhhHHHHHHHHhcCCChHHHHHHH----HHHHH
Q 007881 74 ---RNLATWNAYISNAVLGGRPKNAIDAFINL----RRT-G--GEPDLITFCAFLNACSDCSLLQLGRQLH----GFLVR 139 (586)
Q Consensus 74 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~----~~~~~ 139 (586)
-+......++++++|-.+-+.+...-..+ ... + ...|..-....++++++-.+-+...... ..+..
T Consensus 241 ~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~ 320 (2316)
T PRK09169 241 LQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQ 320 (2316)
T ss_pred HHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 13445667888888876655443332222 111 1 1246667888899999887655433222 22211
Q ss_pred ---hCCCCChhHHHHHHHHHHhcCChHHHHHHH----hcCC-------CCChhhHHHHHHHHHHcCChHH----HHHHHH
Q 007881 140 ---SGFDGNVSVCNGLVDFYGKCNEVGLAKVVF----DGII-------DKNDVSWCSMLVVYVQNYEEEN----GCQMFL 201 (586)
Q Consensus 140 ---~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~----~~~~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~~ 201 (586)
..-..+..-....+++++|..+-+.+.... +.+. .-+..-....+.++++-++-+. |..+..
T Consensus 321 ~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~ 400 (2316)
T PRK09169 321 ERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAA 400 (2316)
T ss_pred ChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 112345555667788889988776543322 2221 1244555667788888766442 333433
Q ss_pred HHHHC-C--CCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHH---h----CCCCchhHHHHHHHHHHhcCCHHH----HH
Q 007881 202 TARRE-G--VEPKDFMISSVLSACARIAGLELGRSVHAVAVK---A----CVEGNIFVGSALVDMYGKCGSIQD----AE 267 (586)
Q Consensus 202 ~m~~~-g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~----~~~~~~~~~~~li~~~~~~g~~~~----A~ 267 (586)
.+... + -..|..-...++.+|++-+.-+.+.+....+.. . .-..+..-....+.+++|.++-+. |.
T Consensus 401 rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~ 480 (2316)
T PRK09169 401 RLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAE 480 (2316)
T ss_pred HHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 33332 1 124677788899999988766644433322211 1 122345566667888888776542 33
Q ss_pred HHHhhCCC-------CCeeHHHHHHHHHHhcCCHHHHH----HHHHHhhhcc-CCCCCCHHHHHHHHHHhhccCCHHH--
Q 007881 268 IAFNKMPE-------RNLVCWNAIIGGYAHQGHADMAL----SSFEEMTSMR-CEAVPNYVTLVCVLSACSRAGAVEK-- 333 (586)
Q Consensus 268 ~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~-~g~~pd~~t~~~ll~a~~~~g~~~~-- 333 (586)
.+...+.. -+..-....+.++++-++.+.+. .+..++.... .--.-|..-+...+.++++-.+.+.
T Consensus 481 ~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr 560 (2316)
T PRK09169 481 ALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCR 560 (2316)
T ss_pred HHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHH
Confidence 34433321 24455667888888888765532 2333332200 0112466778889999999877433
Q ss_pred --HHHHHHHhHHhcC--CCCChHHHHHHHHHHHhcCChH----HHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCH
Q 007881 334 --GMKIFYSMTLKYG--IKPGAEHYACVVDLLGRAGLVD----RAYEIIKEMP------MRPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 334 --a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~m~------~~p~~~~~~~ll~~~~~~~~~ 399 (586)
|..+...+..+.+ -..+.......+.+++|-+.-. .|..+..... ..-|.--+..+++++.+-.+.
T Consensus 561 ~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~ 640 (2316)
T PRK09169 561 AAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDE 640 (2316)
T ss_pred HHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCc
Confidence 2233333322111 1234567778888999877542 2333444431 113667788899999998876
Q ss_pred HHHHHHHHHHhc--------cCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 400 ELGRIAADNLFK--------LDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 400 ~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+........+-. ..--++.-...+.+++++-.+...+.+....+
T Consensus 641 ~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 641 DDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred hhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 655443333322 11123445566778888887766555544444
No 466
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.74 E-value=2.8e+02 Score=20.96 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChH-HHHHHHHHH
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPN--DSGNHVLLSNMFAATGRWE-EADLVRKEM 443 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 443 (586)
|...-..+...+...|+++.|++.+-.+.+.++. +...-..++.++...|.-+ -+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455566666677777777777777777776643 3556666666666666533 344444443
No 467
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=26.66 E-value=79 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHHHHcCcccCCccc
Q 007881 476 NTEIQAMLTKLREEMKAAGYIPDTNFA 502 (586)
Q Consensus 476 ~~~~~~~~~~l~~~m~~~g~~pd~~~~ 502 (586)
..++...+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345667788888999999999996554
No 468
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.51 E-value=1.2e+02 Score=30.76 Aligned_cols=99 Identities=14% Similarity=-0.017 Sum_probs=48.9
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCeeH-HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCH
Q 007881 256 MYGKCGSIQDAEIAFNKMPE--RNLVC-WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAV 331 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~ 331 (586)
-+.+.+.++.|..++.+..+ ||-.. |..-..++.+.+++..|+.=+.+.++ . .|+ ...|..=..+|...+..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~--dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE--L--DPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh--c--CchhhheeeeccHHHHhHHHH
Confidence 34455566666666666543 33322 22233555666666666655555554 1 133 22333333445555555
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007881 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLL 361 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 361 (586)
.+|...|+... .+.|+..-...+++-+
T Consensus 89 ~~A~~~l~~~~---~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVK---KLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhh---hcCcCcHHHHHHHHHH
Confidence 55555555553 3455555444444443
No 469
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.48 E-value=7e+02 Score=25.36 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=51.5
Q ss_pred CCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCeeHHHHHH
Q 007881 209 EPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKM---PERNLVCWNAII 285 (586)
Q Consensus 209 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li 285 (586)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444444444433 5777777777766554321111 12222222221 112233445556
Q ss_pred HHHHh---cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh
Q 007881 286 GGYAH---QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC 325 (586)
Q Consensus 286 ~~~~~---~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~ 325 (586)
+++.+ .++.+.|+..+.+|.+ .|..|....-..+..++
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~--~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLE--AGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 66655 4788999999999998 77666655444444443
No 470
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.29 E-value=1.8e+02 Score=21.40 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=5.0
Q ss_pred hcCCchHHHHHhc
Q 007881 57 KTGLKDDADKMFD 69 (586)
Q Consensus 57 ~~g~~~~A~~~~~ 69 (586)
..|+.+-+..+++
T Consensus 35 ~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 35 ENGNLEIVKLLLE 47 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344333333333
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.21 E-value=2.9e+02 Score=24.51 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=31.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCC------CCeeHHHHHHH-HHHhcCC--HHHHHHHHHHhhh
Q 007881 255 DMYGKCGSIQDAEIAFNKMPE------RNLVCWNAIIG-GYAHQGH--ADMALSSFEEMTS 306 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 306 (586)
-.....|++++|..-++++.+ .-...|..+.. +++.++. +-+|.-++.-...
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 334556778888887777653 23445555555 5666654 4566666665554
No 472
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=26.20 E-value=3.3e+02 Score=28.23 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--------CchhHHH
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPN--------DSGNHVL 422 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~~ 422 (586)
+..|...+.-|...+++++|.++.+-.+ +...|.+|......+.+..-++..+..+.+.+.- -+.--..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 4445666667777788888888776553 5567777777766666766666666555543311 0111122
Q ss_pred HHHHHhhcCChHHHHHHHHH
Q 007881 423 LSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~ 442 (586)
++....-.|+..||.-++..
T Consensus 650 mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHhccchhhhHHHHh
Confidence 33334455777777666543
No 473
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.17 E-value=4.8e+02 Score=23.38 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=24.1
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
....+.++..+...|+++.|-+.|.-+..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 34667788888889999999999988887
No 474
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.03 E-value=5.1e+02 Score=23.69 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC---ChHHH--HHHHHHHHhcCChHHHHHHHHhC-C--CCCC
Q 007881 311 AVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP---GAEHY--ACVVDLLGRAGLVDRAYEIIKEM-P--MRPT 382 (586)
Q Consensus 311 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~m-~--~~p~ 382 (586)
+.++..-++.|+--|.-...+.+|-..|..- .++.| |...+ ..-|......|++++|++.+.+. | +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 4455555666655555444555555555433 25555 23333 34566678888888888888877 2 1223
Q ss_pred HHHHHHHH--HH--HHHcCCHHHHHHHHHH
Q 007881 383 ISVWGALL--NA--CRVYGKPELGRIAADN 408 (586)
Q Consensus 383 ~~~~~~ll--~~--~~~~~~~~~a~~~~~~ 408 (586)
...+--|. .. ..+.|..++|+.+++.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222221 11 4556666666666554
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.73 E-value=6.3e+02 Score=24.63 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=8.5
Q ss_pred HHHHHHHHhcc
Q 007881 518 HSEKIALAFGL 528 (586)
Q Consensus 518 ~~~~la~~~~~ 528 (586)
--+.||.+||+
T Consensus 319 ~l~~MA~aFgV 329 (393)
T KOG0687|consen 319 TLESMAKAFGV 329 (393)
T ss_pred HHHHHHHHhCc
Confidence 35778999986
No 476
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=25.73 E-value=3.3e+02 Score=27.80 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChH
Q 007881 118 LNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDK---NDVSWCSMLVVYVQNYEEE 194 (586)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 194 (586)
+.+.+..|.++-++.+.+.- ..+..+..|-+.=+.+-|--|+++-..-+.+.--.+ |..-.+.|+-++.+..
T Consensus 88 LWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh--- 162 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH--- 162 (615)
T ss_pred hhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc---
Q ss_pred HHHHHHHHHHHCCCCCCHhHH--HHHHHHHhcccCcHHHHHHHHHHHH-----hCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007881 195 NGCQMFLTARREGVEPKDFMI--SSVLSACARIAGLELGRSVHAVAVK-----ACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 195 ~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
.++-+.+.+.|..++..++ ++.+.-|+.+|.++-...++..-.+ .|..| +-.-...|..+..+
T Consensus 163 --~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtP--------L~~Aa~tG~~~iVe 232 (615)
T KOG0508|consen 163 --VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTP--------LLLAAVTGHTDIVE 232 (615)
T ss_pred --hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCch--------HHHHhhhcchHHHH
Q ss_pred HHHhhCCC--CCeeHHHHHHHHHHhcCC-HHHHHHHHHHhhhccCCCC-----CCHHHHHHHHHHhhccCCHHHHHHHHH
Q 007881 268 IAFNKMPE--RNLVCWNAIIGGYAHQGH-ADMALSSFEEMTSMRCEAV-----PNYVTLVCVLSACSRAGAVEKGMKIFY 339 (586)
Q Consensus 268 ~~~~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~g~~-----pd~~t~~~ll~a~~~~g~~~~a~~~~~ 339 (586)
.+.+.+.. .-+.....+...|....+ .-.|+..|.+..+ .... +...++ ..+.+|..........++=.
T Consensus 233 ~L~~~~~sr~~riealEllGat~~dkk~D~~~al~~w~~aMe--~r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~elE~ 309 (615)
T KOG0508|consen 233 RLLQCETSRESRIEALELLGATYVDKKRDLLGALKYWRRAME--ERESDGESILEKEPL-EPVLAYGYGREVNNREELEE 309 (615)
T ss_pred HHhcCCcchhhHHHHHHHhcccccchhHHHHHHHHHHHHHHH--hhhhccccccccCCC-CchhhhhhhhhcCCHHHHHH
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhc-----
Q 007881 340 SMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNA-CRVYGKPELGRIAADNLFK----- 411 (586)
Q Consensus 340 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~----- 411 (586)
-.. .||......|| +-+++ +..||..-|-..-.+ |+..|+++.-+++|..++.
T Consensus 310 lv~-----D~d~~RmqaLi--------------irerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~ 370 (615)
T KOG0508|consen 310 LVE-----DPDEMRMQALI--------------IRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKN 370 (615)
T ss_pred Hhc-----ChHHHHHHHHH--------------HHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhh
Q ss_pred cCCCCchhHHHHHH
Q 007881 412 LDPNDSGNHVLLSN 425 (586)
Q Consensus 412 ~~p~~~~~~~~l~~ 425 (586)
+.|-++.+...+.+
T Consensus 371 l~PlspmT~sslls 384 (615)
T KOG0508|consen 371 LEPLSPMTASSLLS 384 (615)
T ss_pred cCCCCcccHHHHHH
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.70 E-value=1.8e+02 Score=20.51 Aligned_cols=48 Identities=8% Similarity=-0.074 Sum_probs=26.8
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007881 174 DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222 (586)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 222 (586)
.+....++.++..+++..-.++++..+.+..+.|. .+..+|.--...+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34455566666666666666777777777766663 3344444433333
No 478
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.92 E-value=5.9e+02 Score=24.00 Aligned_cols=118 Identities=8% Similarity=0.085 Sum_probs=67.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHh---HHHHHHHHHhcccCcHHHHHHHHHHHH---hCCC--CchhHHHHHHHHHHhc
Q 007881 189 QNYEEENGCQMFLTARREGVEPKDF---MISSVLSACARIAGLELGRSVHAVAVK---ACVE--GNIFVGSALVDMYGKC 260 (586)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~li~~~~~~ 260 (586)
+...+++|+.-|++..+..-.-... ....++....+.+++++....+.++.. +.+. -+....|++++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4457889999999887643222222 344567777888888888777776643 2111 1344566677666655
Q ss_pred CCHHHHHHHHhhCCC-----CCeeHH----HHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 261 GSIQDAEIAFNKMPE-----RNLVCW----NAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 261 g~~~~A~~~~~~m~~-----~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
.+.+--.++++.-.+ +|...| +-+...|...|.+.+..++++++..
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 555555554443221 333333 3345555556666666666666554
No 479
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.91 E-value=3e+02 Score=20.59 Aligned_cols=38 Identities=5% Similarity=0.087 Sum_probs=24.7
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChH
Q 007881 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEE 194 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 194 (586)
+...+.+.|.++++.++.+...+|.....++-..|...
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34455667777777777777777777776666655443
No 480
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.45 E-value=4.2e+02 Score=26.78 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCeeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007881 249 VGSALVDMYGKCGSIQDAEIAFNKMPE-----------RNLVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
..-.|++.++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777778888888888776641 234455556666777777777777776554
No 481
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.05 E-value=1.4e+02 Score=27.31 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=49.4
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..+.++.+.+.+++.+++++-|.....|..++..-.++|+.+.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3467888999999999999999999999999999999999999999999887643
No 482
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.95 E-value=3.3e+02 Score=27.53 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007881 148 VCNGLVDFYGKCNEVGLAKVVFDGIID-----------KNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
....|++.++-.||+..|+++++.+.- -.+.++--+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888999988888876621 134456667778888888888888887664
No 483
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.83 E-value=8.1e+02 Score=25.24 Aligned_cols=238 Identities=11% Similarity=0.048 Sum_probs=122.6
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhh--hHHHHHH-----HHhcCCchHHHHHhccCCC---CCcccHHHHHHHH
Q 007881 17 FKASSALHIPVTGKQLHALALKSGQIHDVFV--GCSAFDM-----YSKTGLKDDADKMFDEMPE---RNLATWNAYISNA 86 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~-----~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 86 (586)
+...+..++. ++.+.+++.|..++... ....+.. .+..|..+-+.-+++.-.. +|...++.|..+.
T Consensus 39 L~~A~~~~~~----~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~ 114 (480)
T PHA03100 39 LYLAKEARNI----DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAI 114 (480)
T ss_pred hhhhhccCCH----HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHH
Confidence 3334455554 45555666777665432 2344555 6677777777777765443 3333445554443
Q ss_pred H-cCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhc
Q 007881 87 V-LGGRPKNAIDAFINLRRTGGEPDLIT--FCAFLNACSDCS--LLQLGRQLHGFLVRSGFDGNVS--VCNGLVDFYGKC 159 (586)
Q Consensus 87 ~-~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~ 159 (586)
. ..|+. ++++.+.+.|..++... -.+.+...+..+ +.+ +.+.+++.|..++.. ...+-+...++.
T Consensus 115 ~~~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 115 SKKSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred hcccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 2 55554 34555556676554322 123444445555 444 455566677655432 223456667788
Q ss_pred CChHHHHHHHhcCCCCChh---h-----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHhcccCc
Q 007881 160 NEVGLAKVVFDGIIDKNDV---S-----WCSMLVVYVQNYEEENGCQMFLTARREGVEPKD---FMISSVLSACARIAGL 228 (586)
Q Consensus 160 g~~~~A~~~~~~~~~~~~~---~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~ 228 (586)
|+.+-+.-+++.-..++.. . +.+.+...+..|. ...++++.+.+.|..++. .-.+.+..| +..|+.
T Consensus 187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A-~~~~~~ 263 (480)
T PHA03100 187 GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYA-VYNNNP 263 (480)
T ss_pred CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCH
Confidence 8888888887765443321 1 1233333344454 123444555666655432 223344333 344554
Q ss_pred HHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhhC
Q 007881 229 ELGRSVHAVAVKACVEGNIFV--GSALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m 273 (586)
+ +.+.+.+.|..++... ..+-+....+.|..+-+..+++.-
T Consensus 264 ~----iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g 306 (480)
T PHA03100 264 E----FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 306 (480)
T ss_pred H----HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence 4 4455566666554332 112334445667777666666653
No 484
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.51 E-value=3.7e+02 Score=21.10 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=11.5
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 007881 183 MLVVYVQNYEEENGCQMFLTA 203 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m 203 (586)
++..|...+++++|..-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 444555555555555555554
No 485
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=23.49 E-value=1e+03 Score=27.00 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=31.0
Q ss_pred HHHHHHhcccCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007881 217 SVLSACARIAGLELGRSVHAVAVKACVEGNIFV--GSALVDMYGKCGSIQDAEIAFNKMPER 276 (586)
Q Consensus 217 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 276 (586)
..+...+..|+.+.++.+ ++.|..++..- ..+-+..-+..|+.+-+.-+++.-.++
T Consensus 624 ~~L~~Aa~~g~~~~v~~L----l~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv 681 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKEL----LKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681 (823)
T ss_pred hHHHHHHHhCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence 345556666776655444 34555544321 122344456678888777777665443
No 486
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.41 E-value=3.4e+02 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
...+..-|.+.|++++|.++|+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 335566677777777777777766
No 487
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.35 E-value=23 Score=33.61 Aligned_cols=17 Identities=47% Similarity=1.079 Sum_probs=13.6
Q ss_pred CCccceeccccc---ccCCC
Q 007881 569 NNRFHRFWDGYC---SCSDY 585 (586)
Q Consensus 569 ~~~~h~~~~g~~---~~~~~ 585 (586)
.+.||+|.+|+| .|.|+
T Consensus 362 NrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 362 NRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hhhhhhhhccccceeeehhh
Confidence 566999999999 56664
No 488
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.34 E-value=2.7e+02 Score=21.83 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 007881 283 AIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
.++..|...|+.++|...++++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34555666666666666666653
No 489
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=23.18 E-value=2.3e+02 Score=26.71 Aligned_cols=58 Identities=21% Similarity=0.065 Sum_probs=47.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+=.++...++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3445778889999999999999999998877777788899999988888888876653
No 490
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.17 E-value=6.9e+02 Score=24.16 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHH
Q 007881 198 QMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAV 239 (586)
Q Consensus 198 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (586)
++++.|...++.|.-++|..+.-.+++.=.+..+..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444555555554444444444444445555554444
No 491
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=22.83 E-value=4.3e+02 Score=21.64 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhH---HHHHHHHhcC-------CChHHHHHHHHHHHHhCCCCChhH
Q 007881 79 WNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITF---CAFLNACSDC-------SLLQLGRQLHGFLVRSGFDGNVSV 148 (586)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~-------~~~~~a~~~~~~~~~~g~~~~~~~ 148 (586)
....++.+....-.-.++++..++....-.|..+.- +.-++.|-.. +.....-.++..+++.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 444555555555555666666666655444443322 2223333321 122233344555666665555556
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcC
Q 007881 149 CNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
+..+-..+.+..++.+|..+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 666666666666677777766543
No 492
>PRK09857 putative transposase; Provisional
Probab=22.79 E-value=5.2e+02 Score=24.80 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccC
Q 007881 387 GALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKG 451 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 451 (586)
..++.-....++.++-.++++.+.+..|........++.-+.+.|.-+++.++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444556666666777766666666556666778888888888889999999998887543
No 493
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.71 E-value=1.8e+02 Score=24.43 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred CccCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcC
Q 007881 1 MRRECISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTG 59 (586)
Q Consensus 1 M~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 59 (586)
|++.|++++..-...+=-.....+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 8 l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 494
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.65 E-value=1.2e+02 Score=21.79 Aligned_cols=33 Identities=6% Similarity=-0.133 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhc
Q 007881 25 IPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKT 58 (586)
Q Consensus 25 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 58 (586)
+.+.|++++..+.... ..++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4567777777765433 67788899888777664
No 495
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=22.29 E-value=6.7e+02 Score=23.70 Aligned_cols=77 Identities=9% Similarity=-0.071 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-------------
Q 007881 369 RAYEIIKEMPMRPTISVWGALLNACR----VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG------------- 431 (586)
Q Consensus 369 ~A~~~~~~m~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 431 (586)
.|...+.++-..-+......|...|. ...+.++|...+.++.+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 56666666522223333333333332 23367778888888777766 34444444 444444
Q ss_pred --ChHHHHHHHHHHHhCCC
Q 007881 432 --RWEEADLVRKEMKDVGI 448 (586)
Q Consensus 432 --~~~~a~~~~~~m~~~g~ 448 (586)
+...|...+......|.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55666666666655443
No 496
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=22.22 E-value=2.7e+02 Score=20.45 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh---hHHHHHHHHhcCCChHHHH
Q 007881 55 YSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLI---TFCAFLNACSDCSLLQLGR 131 (586)
Q Consensus 55 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~ 131 (586)
.++.|+++-...+++.-...+. -+..+...+..|+. ++++.+.+.|..|+.. -.+.+..+ +..|..+
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~--- 73 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYA-AENGNLE--- 73 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTHHH---
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHH-HHcCCHH---
Confidence 3466677766666664333332 12244455566764 5666666777777654 33444444 4455544
Q ss_pred HHHHHHHHhCCCCCh
Q 007881 132 QLHGFLVRSGFDGNV 146 (586)
Q Consensus 132 ~~~~~~~~~g~~~~~ 146 (586)
+.+.+.+.|..++.
T Consensus 74 -~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 74 -IVKLLLEHGADVNI 87 (89)
T ss_dssp -HHHHHHHTTT-TTS
T ss_pred -HHHHHHHcCCCCCC
Confidence 55666777766653
No 497
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.20 E-value=2e+02 Score=22.81 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchH
Q 007881 15 CLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDD 63 (586)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 63 (586)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3566666666777899999999988766777776677888888886543
No 498
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.99 E-value=6.2e+02 Score=24.37 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 007881 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNA 120 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 120 (586)
.+++.|+-.+-+|.+.|-.|....-..++-+
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~A 170 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIA 170 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4455555555555555544443333333333
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.73 E-value=3.1e+02 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=23.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 45568999999999999999988 6665443
No 500
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=21.36 E-value=7.3e+02 Score=24.34 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=28.3
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCCCHhHHHH--HHHHHhcccCcHHHHHHHHHHHH
Q 007881 188 VQNYEEENGCQMFLTARRE---GVEPKDFMISS--VLSACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~ 240 (586)
-+.++.++|+++++++.+. --.|+.+.|.. ...++...|++.++++++....+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444666666666666542 12344444432 33344456666666666666555
Done!