Query 007881
Match_columns 586
No_of_seqs 807 out of 4258
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 12:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.3E-40 2.1E-44 351.1 38.8 429 8-446 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.6E-37 2.9E-41 326.8 37.1 414 6-429 113-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.5E-29 1.2E-33 257.7 21.1 184 178-364 27-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 9.9E-29 3.4E-33 254.3 22.3 184 77-260 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.5E-31 232.7 38.4 338 85-432 42-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-25 4.8E-30 226.3 42.0 350 83-445 6-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 8.3E-23 2.8E-27 213.8 31.8 393 45-446 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.6E-22 8.8E-27 206.5 33.0 319 75-426 25-372 (450)
9 2gw1_A Mitochondrial precursor 99.9 8.7E-23 3E-27 213.6 29.4 403 12-423 8-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4.1E-26 201.5 30.6 358 29-416 11-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 1E-21 3.4E-26 206.9 29.2 422 11-447 26-492 (537)
12 3fp2_A TPR repeat-containing p 99.8 1.6E-19 5.4E-24 190.0 25.9 399 9-421 58-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 3.3E-18 1.1E-22 169.6 33.4 320 76-428 3-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 6E-18 2E-22 167.7 34.1 304 111-446 3-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 2.2E-19 7.6E-24 176.2 18.9 347 56-442 14-368 (449)
16 3hym_B Cell division cycle pro 99.8 9.6E-18 3.3E-22 164.3 30.3 287 143-434 19-322 (330)
17 2ooe_A Cleavage stimulation fa 99.8 2.1E-16 7.2E-21 165.9 37.8 393 43-446 11-492 (530)
18 2xm6_A Protein corresponding t 99.8 5.2E-16 1.8E-20 161.2 37.4 375 30-428 27-451 (490)
19 3hym_B Cell division cycle pro 99.8 5.8E-17 2E-21 158.7 27.8 264 175-445 20-298 (330)
20 1fch_A Peroxisomal targeting s 99.8 1.7E-17 5.7E-22 165.5 23.5 277 158-442 37-355 (368)
21 2xm6_A Protein corresponding t 99.8 5.1E-15 1.7E-19 153.7 40.5 352 74-448 37-434 (490)
22 1fch_A Peroxisomal targeting s 99.8 5E-17 1.7E-21 162.0 23.2 228 77-342 65-312 (368)
23 1b89_A Protein (clathrin heavy 99.8 2.1E-18 7.3E-23 169.3 11.7 251 158-441 15-267 (449)
24 4eqf_A PEX5-related protein; a 99.8 4.4E-17 1.5E-21 162.4 21.1 262 176-442 64-352 (365)
25 2ooe_A Cleavage stimulation fa 99.8 1.8E-15 6.2E-20 158.7 33.7 398 9-415 12-495 (530)
26 3mkr_A Coatomer subunit epsilo 99.7 5.3E-16 1.8E-20 148.9 25.0 267 156-438 9-286 (291)
27 1xi4_A Clathrin heavy chain; a 99.7 2E-14 6.9E-19 156.9 38.9 378 13-438 988-1376(1630)
28 4eqf_A PEX5-related protein; a 99.7 1.1E-16 3.6E-21 159.6 19.6 222 114-342 68-308 (365)
29 4g1t_A Interferon-induced prot 99.7 3.2E-15 1.1E-19 154.5 30.7 362 78-456 53-469 (472)
30 3cv0_A Peroxisome targeting si 99.7 5E-16 1.7E-20 151.8 22.0 258 179-443 23-312 (327)
31 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.8E-18 151.1 40.3 362 31-441 969-1340(1630)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.2E-22 175.2 10.4 150 143-292 124-286 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 8.7E-18 3E-22 177.6 7.4 132 243-377 123-262 (1134)
34 3cv0_A Peroxisome targeting si 99.7 5.9E-15 2E-19 144.1 25.2 262 9-274 20-313 (327)
35 4g1t_A Interferon-induced prot 99.7 1.7E-14 5.8E-19 149.0 28.9 365 43-424 49-471 (472)
36 3mkr_A Coatomer subunit epsilo 99.7 4.5E-15 1.5E-19 142.4 20.7 246 184-446 6-264 (291)
37 3uq3_A Heat shock protein STI1 99.6 5.3E-14 1.8E-18 132.1 21.6 223 179-446 7-236 (258)
38 3uq3_A Heat shock protein STI1 99.6 4.3E-14 1.5E-18 132.8 20.3 233 146-424 5-254 (258)
39 2pl2_A Hypothetical conserved 99.6 5.5E-14 1.9E-18 128.7 18.9 193 245-444 3-212 (217)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.7E-14 2.3E-18 133.0 18.8 241 189-440 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 2.6E-13 8.8E-18 128.8 20.7 243 149-430 6-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 1E-12 3.5E-17 134.4 25.0 376 16-445 9-420 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 2.6E-12 8.9E-17 120.3 23.3 166 250-419 74-245 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-12 6.2E-17 123.0 21.6 240 88-338 17-269 (275)
45 2pl2_A Hypothetical conserved 99.5 2E-12 6.8E-17 118.2 20.5 194 75-273 4-211 (217)
46 3u4t_A TPR repeat-containing p 99.5 4.1E-12 1.4E-16 120.4 22.9 228 111-343 3-249 (272)
47 2h6f_A Protein farnesyltransfe 99.5 2.2E-12 7.6E-17 127.9 21.7 243 177-428 97-364 (382)
48 3e4b_A ALGK; tetratricopeptide 99.5 3.1E-12 1E-16 130.8 23.4 343 82-448 9-389 (452)
49 2ho1_A Type 4 fimbrial biogene 99.5 1.9E-12 6.6E-17 121.2 20.0 197 247-447 37-239 (252)
50 2vq2_A PILW, putative fimbrial 99.5 3E-12 1E-16 117.3 20.9 196 246-445 7-210 (225)
51 1ouv_A Conserved hypothetical 99.5 1E-11 3.6E-16 117.8 24.8 225 176-415 5-254 (273)
52 2vq2_A PILW, putative fimbrial 99.5 5.9E-12 2E-16 115.3 22.2 207 177-423 8-222 (225)
53 2q7f_A YRRB protein; TPR, prot 99.5 5.9E-13 2E-17 123.8 15.6 172 249-425 59-235 (243)
54 1ouv_A Conserved hypothetical 99.5 1.6E-11 5.3E-16 116.6 25.2 224 211-448 5-253 (273)
55 2q7f_A YRRB protein; TPR, prot 99.5 9.9E-13 3.4E-17 122.3 16.2 197 245-446 21-222 (243)
56 3sf4_A G-protein-signaling mod 99.5 2.3E-12 7.9E-17 129.7 20.2 263 182-445 14-335 (406)
57 4a1s_A PINS, partner of inscut 99.4 8.5E-13 2.9E-17 133.5 15.5 198 248-445 127-371 (411)
58 3ro2_A PINS homolog, G-protein 99.4 2.2E-12 7.6E-17 125.9 17.6 262 183-446 11-332 (338)
59 2h6f_A Protein farnesyltransfe 99.4 7.2E-12 2.5E-16 124.3 20.0 224 213-445 98-347 (382)
60 3sf4_A G-protein-signaling mod 99.4 5.3E-12 1.8E-16 127.1 18.8 154 280-434 189-364 (406)
61 4abn_A Tetratricopeptide repea 99.4 9.8E-13 3.4E-17 135.4 13.2 191 246-443 101-318 (474)
62 3vtx_A MAMA; tetratricopeptide 99.4 1.7E-11 5.7E-16 108.7 19.5 164 277-446 4-170 (184)
63 4a1s_A PINS, partner of inscut 99.4 7.4E-12 2.5E-16 126.5 17.3 134 280-414 225-374 (411)
64 3ro2_A PINS homolog, G-protein 99.4 9.6E-12 3.3E-16 121.4 17.0 98 317-414 225-334 (338)
65 4e6h_A MRNA 3'-END-processing 99.4 2.5E-09 8.5E-14 113.3 36.3 200 212-416 343-574 (679)
66 3ulq_A Response regulator aspa 99.3 1.8E-11 6.3E-16 122.4 17.0 196 248-445 144-367 (383)
67 4e6h_A MRNA 3'-END-processing 99.3 1.8E-09 6.3E-14 114.3 32.9 416 28-447 50-571 (679)
68 2ond_A Cleavage stimulation fa 99.3 6.5E-10 2.2E-14 107.5 25.8 217 194-417 33-275 (308)
69 3nf1_A KLC 1, kinesin light ch 99.3 4.2E-12 1.5E-16 122.7 9.4 242 177-445 27-306 (311)
70 4gyw_A UDP-N-acetylglucosamine 99.3 4.6E-11 1.6E-15 128.0 17.7 161 278-445 9-173 (723)
71 2ond_A Cleavage stimulation fa 99.3 2.1E-10 7.1E-15 111.0 20.9 212 229-447 33-271 (308)
72 3vtx_A MAMA; tetratricopeptide 99.3 7.5E-11 2.6E-15 104.5 15.8 167 246-417 4-175 (184)
73 1hz4_A MALT regulatory protein 99.3 2E-09 6.8E-14 107.1 27.9 261 185-445 22-321 (373)
74 3ulq_A Response regulator aspa 99.3 1.3E-10 4.3E-15 116.3 18.5 231 183-413 109-369 (383)
75 3as5_A MAMA; tetratricopeptide 99.3 2.8E-10 9.5E-15 100.4 18.6 160 282-446 12-173 (186)
76 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.3E-16 119.3 9.9 244 145-415 26-310 (311)
77 4abn_A Tetratricopeptide repea 99.2 3.1E-10 1.1E-14 116.7 18.2 207 193-408 84-317 (474)
78 3as5_A MAMA; tetratricopeptide 99.2 5.7E-10 1.9E-14 98.3 17.4 168 247-419 8-180 (186)
79 3q15_A PSP28, response regulat 99.2 3.6E-10 1.2E-14 112.8 17.9 196 249-445 143-364 (378)
80 4i17_A Hypothetical protein; T 99.2 8.2E-10 2.8E-14 101.5 18.5 204 210-427 5-224 (228)
81 1hz4_A MALT regulatory protein 99.1 2E-08 6.8E-13 99.8 27.2 157 84-240 22-202 (373)
82 4i17_A Hypothetical protein; T 99.1 2.1E-09 7.2E-14 98.7 17.4 187 246-446 6-209 (228)
83 3q15_A PSP28, response regulat 99.1 1.1E-08 3.9E-13 101.8 23.8 229 184-412 108-365 (378)
84 1qqe_A Vesicular transport pro 99.1 1.8E-09 6E-14 103.5 15.2 189 256-444 46-267 (292)
85 3edt_B KLC 2, kinesin light ch 99.1 2.2E-09 7.4E-14 101.7 15.1 131 212-342 43-196 (283)
86 1qqe_A Vesicular transport pro 99.1 3.4E-09 1.2E-13 101.4 16.4 245 129-416 3-273 (292)
87 4gyw_A UDP-N-acetylglucosamine 99.0 5.1E-09 1.7E-13 112.2 16.4 156 146-341 9-171 (723)
88 3mv2_B Coatomer subunit epsilo 99.0 4.6E-08 1.6E-12 92.1 20.3 180 231-420 85-290 (310)
89 3qky_A Outer membrane assembly 99.0 1E-08 3.5E-13 96.3 15.9 173 247-419 15-231 (261)
90 3mv2_B Coatomer subunit epsilo 99.0 7.6E-08 2.6E-12 90.6 21.4 174 266-446 85-282 (310)
91 3qky_A Outer membrane assembly 99.0 5.3E-08 1.8E-12 91.4 20.6 167 276-446 13-224 (261)
92 2fo7_A Synthetic consensus TPR 98.9 2.1E-08 7.1E-13 82.8 15.0 122 322-445 8-131 (136)
93 4ga2_A E3 SUMO-protein ligase 98.9 2.8E-09 9.5E-14 90.8 9.1 140 286-432 5-149 (150)
94 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.7E-08 1.6E-12 89.4 17.9 180 247-448 4-215 (225)
95 2fo7_A Synthetic consensus TPR 98.9 4.6E-08 1.6E-12 80.7 15.3 131 280-415 3-135 (136)
96 3qou_A Protein YBBN; thioredox 98.9 4.8E-08 1.7E-12 93.1 16.2 161 277-444 116-282 (287)
97 3edt_B KLC 2, kinesin light ch 98.8 1.6E-08 5.4E-13 95.7 12.1 128 179-306 129-280 (283)
98 2pzi_A Probable serine/threoni 98.8 1.4E-08 4.9E-13 109.2 13.0 167 258-432 402-583 (681)
99 2r5s_A Uncharacterized protein 98.8 7.6E-08 2.6E-12 84.2 14.6 156 283-445 11-172 (176)
100 3rjv_A Putative SEL1 repeat pr 98.8 2.5E-07 8.6E-12 83.7 18.0 162 276-448 16-199 (212)
101 2pzi_A Probable serine/threoni 98.8 1.3E-07 4.5E-12 101.6 17.5 187 223-418 402-608 (681)
102 2vsy_A XCC0866; transferase, g 98.7 1.2E-07 4.1E-12 100.0 16.1 158 260-424 2-169 (568)
103 2ifu_A Gamma-SNAP; membrane fu 98.7 2.4E-07 8.2E-12 89.2 16.5 221 189-439 3-254 (307)
104 2uy1_A Cleavage stimulation fa 98.7 9E-06 3.1E-10 83.4 28.9 122 317-445 288-412 (493)
105 4ga2_A E3 SUMO-protein ligase 98.7 5.6E-08 1.9E-12 82.6 10.3 122 321-445 3-128 (150)
106 3urz_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 85.0 13.5 127 282-416 58-190 (208)
107 3urz_A Uncharacterized protein 98.7 2.7E-07 9.3E-12 83.2 15.2 133 251-390 58-197 (208)
108 2vsy_A XCC0866; transferase, g 98.7 1.9E-07 6.4E-12 98.5 16.2 145 225-377 2-154 (568)
109 3qou_A Protein YBBN; thioredox 98.7 5.6E-07 1.9E-11 85.6 17.8 161 211-376 116-280 (287)
110 3u3w_A Transcriptional activat 98.7 1.8E-06 6.1E-11 82.4 21.3 161 284-445 81-265 (293)
111 2r5s_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 80.2 14.6 154 250-410 9-171 (176)
112 3gyz_A Chaperone protein IPGC; 98.7 1.4E-07 4.9E-12 79.8 11.8 101 346-446 30-133 (151)
113 3dra_A Protein farnesyltransfe 98.7 4.4E-06 1.5E-10 79.4 22.8 210 230-445 51-286 (306)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 5.6E-07 1.9E-11 82.2 16.1 183 212-417 4-218 (225)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6E-07 2.1E-11 81.0 16.1 126 317-447 8-151 (213)
116 2vgx_A Chaperone SYCD; alterna 98.7 1.7E-07 5.7E-12 79.3 11.1 101 346-446 15-118 (148)
117 3rjv_A Putative SEL1 repeat pr 98.6 1.1E-06 3.7E-11 79.4 16.8 172 231-414 5-199 (212)
118 4gco_A Protein STI-1; structur 98.6 3.5E-07 1.2E-11 74.9 12.2 113 311-425 8-123 (126)
119 4gco_A Protein STI-1; structur 98.6 3E-07 1E-11 75.3 11.5 100 347-446 8-110 (126)
120 2uy1_A Cleavage stimulation fa 98.6 4.6E-06 1.6E-10 85.6 22.9 358 23-411 7-412 (493)
121 3dra_A Protein farnesyltransfe 98.6 1.7E-05 5.7E-10 75.4 24.3 228 190-425 46-301 (306)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2E-06 6.7E-11 77.5 17.0 145 250-416 9-154 (213)
123 1a17_A Serine/threonine protei 98.6 1.3E-06 4.4E-11 75.0 14.2 128 316-445 14-145 (166)
124 1na0_A Designed protein CTPR3; 98.6 1.1E-06 3.8E-11 71.1 13.1 115 315-431 9-125 (125)
125 2qfc_A PLCR protein; TPR, HTH, 98.5 1.4E-06 4.8E-11 83.1 15.5 164 281-445 78-265 (293)
126 2xcb_A PCRH, regulatory protei 98.5 1.8E-06 6.2E-11 72.3 13.7 96 351-446 18-115 (142)
127 2lni_A Stress-induced-phosphop 98.5 1.4E-06 4.9E-11 71.4 12.8 117 314-432 15-133 (133)
128 2ifu_A Gamma-SNAP; membrane fu 98.5 5.3E-07 1.8E-11 86.8 11.5 199 224-444 3-222 (307)
129 2c2l_A CHIP, carboxy terminus 98.5 1.8E-07 6E-12 88.8 7.8 190 247-446 4-199 (281)
130 1p5q_A FKBP52, FK506-binding p 98.5 1.1E-06 3.9E-11 85.6 13.7 127 316-445 148-293 (336)
131 2vyi_A SGTA protein; chaperone 98.5 1.6E-06 5.5E-11 70.8 12.7 118 314-433 11-130 (131)
132 4f3v_A ESX-1 secretion system 98.5 7.5E-07 2.6E-11 82.7 11.3 135 282-423 106-247 (282)
133 3u3w_A Transcriptional activat 98.5 2.3E-05 7.9E-10 74.6 21.8 159 253-412 81-266 (293)
134 4f3v_A ESX-1 secretion system 98.4 3.8E-06 1.3E-10 78.0 14.8 181 259-446 18-237 (282)
135 2qfc_A PLCR protein; TPR, HTH, 98.4 7.8E-06 2.7E-10 77.9 17.7 165 248-412 76-266 (293)
136 2e2e_A Formate-dependent nitri 98.4 9.2E-07 3.1E-11 77.2 9.6 119 326-446 21-144 (177)
137 3upv_A Heat shock protein STI1 98.4 2.5E-06 8.4E-11 69.6 11.4 96 351-446 4-101 (126)
138 2kck_A TPR repeat; tetratricop 98.4 2.8E-06 9.5E-11 67.2 10.6 97 351-447 6-107 (112)
139 3gw4_A Uncharacterized protein 98.3 1E-05 3.4E-10 72.0 15.2 153 290-445 4-175 (203)
140 3q49_B STIP1 homology and U bo 98.3 6E-06 2.1E-10 68.3 12.4 98 349-446 7-106 (137)
141 1elw_A TPR1-domain of HOP; HOP 98.3 1.1E-05 3.7E-10 64.3 13.3 109 316-426 5-115 (118)
142 1wao_1 Serine/threonine protei 98.3 4E-06 1.4E-10 85.9 13.0 118 322-442 13-135 (477)
143 1na0_A Designed protein CTPR3; 98.3 6.2E-06 2.1E-10 66.5 11.7 96 351-446 9-106 (125)
144 1hxi_A PEX5, peroxisome target 98.3 3E-06 1E-10 68.7 9.6 93 354-446 20-114 (121)
145 3q7a_A Farnesyltransferase alp 98.3 0.00026 9E-09 67.9 24.5 173 186-366 63-257 (349)
146 3sz7_A HSC70 cochaperone (SGT) 98.3 4.5E-06 1.5E-10 71.7 11.3 93 353-445 13-107 (164)
147 3gyz_A Chaperone protein IPGC; 98.3 5.6E-06 1.9E-10 69.9 11.5 103 311-416 31-137 (151)
148 2fbn_A 70 kDa peptidylprolyl i 98.3 5.5E-06 1.9E-10 73.7 12.2 169 256-447 13-187 (198)
149 3gw4_A Uncharacterized protein 98.3 3E-06 1E-10 75.5 10.5 27 178-204 27-53 (203)
150 2dba_A Smooth muscle cell asso 98.3 1.5E-05 5.2E-10 66.6 14.3 112 314-428 27-144 (148)
151 2vgx_A Chaperone SYCD; alterna 98.3 4E-06 1.4E-10 70.7 10.4 106 312-420 17-126 (148)
152 1elw_A TPR1-domain of HOP; HOP 98.3 8.6E-06 2.9E-10 64.9 11.9 97 350-446 3-101 (118)
153 2lni_A Stress-induced-phosphop 98.3 7.9E-06 2.7E-10 66.9 11.8 99 348-446 13-113 (133)
154 2dba_A Smooth muscle cell asso 98.3 1.1E-05 3.9E-10 67.4 12.7 98 349-446 26-128 (148)
155 2e2e_A Formate-dependent nitri 98.3 7.3E-06 2.5E-10 71.3 11.8 127 289-420 21-152 (177)
156 2c2l_A CHIP, carboxy terminus 98.3 1.3E-05 4.3E-10 75.9 14.2 189 213-413 5-200 (281)
157 3q7a_A Farnesyltransferase alp 98.2 0.00011 3.8E-09 70.5 20.0 213 227-445 69-330 (349)
158 1a17_A Serine/threonine protei 98.2 1.2E-05 3.9E-10 68.9 11.9 125 281-410 16-144 (166)
159 3upv_A Heat shock protein STI1 98.2 1.4E-05 4.7E-10 65.1 11.5 109 316-426 5-121 (126)
160 3dss_A Geranylgeranyl transfer 98.2 0.0002 7E-09 68.3 20.9 190 228-425 90-317 (331)
161 2xcb_A PCRH, regulatory protei 98.2 1E-05 3.6E-10 67.5 10.6 106 315-423 18-126 (142)
162 2vyi_A SGTA protein; chaperone 98.2 1.7E-05 5.7E-10 64.5 11.7 97 350-446 11-109 (131)
163 4gcn_A Protein STI-1; structur 98.2 6.9E-06 2.4E-10 67.2 9.1 93 353-445 10-111 (127)
164 3sz7_A HSC70 cochaperone (SGT) 98.2 1.9E-05 6.4E-10 67.8 12.3 108 314-424 10-120 (164)
165 2hr2_A Hypothetical protein; a 98.2 9.6E-06 3.3E-10 68.0 9.6 62 384-445 58-130 (159)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.2E-05 7.6E-10 79.9 14.0 129 317-445 270-414 (457)
167 3rkv_A Putative peptidylprolyl 98.1 3E-05 1E-09 66.3 12.4 64 383-446 63-126 (162)
168 4b4t_Q 26S proteasome regulato 98.1 4.8E-05 1.6E-09 76.7 15.8 164 281-445 58-244 (434)
169 3q49_B STIP1 homology and U bo 98.1 2.5E-05 8.5E-10 64.4 11.1 100 314-415 8-109 (137)
170 2xev_A YBGF; tetratricopeptide 98.1 1.6E-05 5.4E-10 64.8 9.5 88 358-445 9-104 (129)
171 2kck_A TPR repeat; tetratricop 98.1 2.1E-05 7.2E-10 61.9 10.0 100 316-417 7-111 (112)
172 3dss_A Geranylgeranyl transfer 98.1 0.00042 1.4E-08 66.2 20.5 178 263-445 90-303 (331)
173 2xev_A YBGF; tetratricopeptide 98.1 5.3E-05 1.8E-09 61.6 12.2 99 322-423 9-116 (129)
174 1elr_A TPR2A-domain of HOP; HO 98.1 2.1E-05 7.2E-10 63.9 9.7 95 352-446 5-108 (131)
175 3ro3_A PINS homolog, G-protein 98.0 3.9E-05 1.3E-09 65.0 11.6 93 353-445 51-157 (164)
176 1elr_A TPR2A-domain of HOP; HO 98.0 1.8E-05 6.2E-10 64.3 8.8 106 318-426 7-121 (131)
177 1p5q_A FKBP52, FK506-binding p 98.0 4.8E-05 1.6E-09 73.9 13.2 93 316-410 197-292 (336)
178 3k9i_A BH0479 protein; putativ 98.0 5.5E-06 1.9E-10 66.6 5.4 82 364-445 3-89 (117)
179 2fbn_A 70 kDa peptidylprolyl i 98.0 1.4E-05 4.9E-10 71.0 8.4 122 50-172 9-148 (198)
180 4b4t_Q 26S proteasome regulato 98.0 0.00011 3.7E-09 74.1 16.0 163 215-377 58-242 (434)
181 4gcn_A Protein STI-1; structur 98.0 5.4E-05 1.8E-09 61.7 11.2 93 250-342 11-110 (127)
182 2if4_A ATFKBP42; FKBP-like, al 98.0 2.4E-05 8.3E-10 76.1 10.1 147 278-446 179-328 (338)
183 1wao_1 Serine/threonine protei 97.9 0.00013 4.4E-09 74.6 15.3 82 257-342 16-101 (477)
184 1ihg_A Cyclophilin 40; ppiase 97.9 6.8E-05 2.3E-09 73.8 12.7 88 351-438 273-362 (370)
185 3ro3_A PINS homolog, G-protein 97.9 5.7E-05 1.9E-09 63.9 10.6 133 280-413 11-159 (164)
186 1hxi_A PEX5, peroxisome target 97.9 7.6E-05 2.6E-09 60.2 9.8 96 318-416 20-118 (121)
187 3k9i_A BH0479 protein; putativ 97.8 2.7E-05 9.4E-10 62.4 6.4 92 328-420 3-98 (117)
188 3rkv_A Putative peptidylprolyl 97.8 6.3E-05 2.2E-09 64.2 9.0 74 351-424 63-139 (162)
189 3n71_A Histone lysine methyltr 97.8 0.00023 8E-09 72.3 14.5 124 324-447 318-465 (490)
190 2hr2_A Hypothetical protein; a 97.8 3.6E-05 1.2E-09 64.4 6.9 69 353-421 59-140 (159)
191 2if4_A ATFKBP42; FKBP-like, al 97.8 6.2E-05 2.1E-09 73.2 9.2 149 247-417 179-333 (338)
192 2l6j_A TPR repeat-containing p 97.7 7.4E-05 2.5E-09 58.8 7.4 91 350-440 3-101 (111)
193 3ma5_A Tetratricopeptide repea 97.7 0.00017 5.8E-09 55.8 9.0 65 382-446 6-70 (100)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00047 1.6E-08 70.0 14.7 115 329-446 248-380 (457)
195 1na3_A Designed protein CTPR2; 97.7 0.00021 7.2E-09 53.7 9.3 81 351-431 9-91 (91)
196 1dce_A Protein (RAB geranylger 97.7 0.00098 3.3E-08 69.4 17.1 167 263-435 45-244 (567)
197 1ihg_A Cyclophilin 40; ppiase 97.7 0.00029 9.9E-09 69.3 12.5 112 316-446 224-336 (370)
198 2kat_A Uncharacterized protein 97.6 0.00016 5.6E-09 57.4 8.2 76 370-445 4-81 (115)
199 1zu2_A Mitochondrial import re 97.4 0.00016 5.3E-09 60.5 4.9 82 365-446 16-120 (158)
200 3bee_A Putative YFRE protein; 97.4 0.0012 4E-08 50.0 9.5 68 381-448 4-74 (93)
201 1klx_A Cysteine rich protein B 97.3 0.0029 1E-07 52.1 12.0 65 382-448 56-128 (138)
202 2l6j_A TPR repeat-containing p 97.3 0.00078 2.7E-08 52.7 8.1 65 382-446 3-67 (111)
203 1wy6_A Hypothetical protein ST 97.3 0.043 1.5E-06 43.4 17.5 146 283-449 10-157 (172)
204 3n71_A Histone lysine methyltr 97.3 0.0013 4.4E-08 66.9 11.4 125 287-411 318-463 (490)
205 3qwp_A SET and MYND domain-con 97.2 0.002 6.9E-08 64.4 11.3 116 358-491 294-427 (429)
206 1zu2_A Mitochondrial import re 97.1 0.00051 1.7E-08 57.4 5.4 52 368-419 63-127 (158)
207 1dce_A Protein (RAB geranylger 97.1 0.009 3.1E-07 62.1 16.1 148 292-445 43-220 (567)
208 1na3_A Designed protein CTPR2; 97.1 0.0017 5.7E-08 48.5 8.0 65 382-446 8-72 (91)
209 3ly7_A Transcriptional activat 97.1 0.011 3.6E-07 56.8 14.5 63 382-445 276-338 (372)
210 1klx_A Cysteine rich protein B 97.0 0.0097 3.3E-07 48.9 12.4 110 90-207 9-127 (138)
211 2kat_A Uncharacterized protein 97.0 0.003 1E-07 49.9 9.0 64 351-414 19-84 (115)
212 3qww_A SET and MYND domain-con 96.9 0.0066 2.3E-07 60.5 11.7 93 328-420 311-424 (433)
213 3lvg_A Clathrin heavy chain 1; 96.8 0.00022 7.4E-09 69.7 0.4 239 43-299 52-325 (624)
214 3ma5_A Tetratricopeptide repea 96.8 0.0037 1.3E-07 48.0 7.4 61 278-342 7-68 (100)
215 3qwp_A SET and MYND domain-con 96.8 0.013 4.3E-07 58.6 12.8 101 322-422 294-415 (429)
216 1pc2_A Mitochondria fission pr 96.7 0.01 3.6E-07 48.9 9.9 65 381-445 30-99 (152)
217 3mkq_A Coatomer beta'-subunit; 96.7 0.11 3.8E-06 56.6 21.3 155 84-273 607-762 (814)
218 3qww_A SET and MYND domain-con 96.7 0.0027 9.2E-08 63.4 7.2 83 363-445 310-410 (433)
219 2kc7_A BFR218_protein; tetratr 96.6 0.0056 1.9E-07 46.6 7.2 61 359-419 8-71 (99)
220 1qsa_A Protein (soluble lytic 96.6 0.54 1.8E-05 48.9 24.1 254 147-411 73-347 (618)
221 2kc7_A BFR218_protein; tetratr 96.6 0.011 3.8E-07 44.8 8.9 85 321-416 6-94 (99)
222 3ly7_A Transcriptional activat 96.5 0.068 2.3E-06 51.3 15.5 168 251-424 168-350 (372)
223 3mkq_A Coatomer beta'-subunit; 96.1 0.071 2.4E-06 58.2 15.4 165 158-378 611-776 (814)
224 3u64_A Protein TP_0956; tetrat 96.0 0.029 9.8E-07 51.6 9.1 85 368-452 180-275 (301)
225 2v5f_A Prolyl 4-hydroxylase su 95.6 0.086 2.9E-06 40.5 9.7 71 353-423 7-86 (104)
226 3bee_A Putative YFRE protein; 95.4 0.12 4.2E-06 38.7 9.5 68 349-416 4-76 (93)
227 1pc2_A Mitochondria fission pr 95.3 0.074 2.5E-06 43.8 8.3 72 349-420 30-108 (152)
228 1nzn_A CGI-135 protein, fissio 95.1 0.16 5.5E-06 40.2 9.4 64 382-445 34-102 (126)
229 3mkq_B Coatomer subunit alpha; 95.1 0.5 1.7E-05 39.9 13.0 103 256-378 14-116 (177)
230 3mkq_B Coatomer subunit alpha; 94.9 1.5 5E-05 37.1 15.4 128 156-305 15-142 (177)
231 1wy6_A Hypothetical protein ST 94.6 1.2 4E-05 35.5 12.7 85 259-348 73-157 (172)
232 1y8m_A FIS1; mitochondria, unk 94.1 1.9 6.5E-05 34.7 13.6 65 381-445 37-105 (144)
233 4gns_B Protein CSD3, chitin bi 93.5 0.29 9.9E-06 51.9 10.0 52 393-444 347-398 (754)
234 4h7y_A Dual specificity protei 93.4 0.54 1.9E-05 38.2 9.1 54 396-449 73-126 (161)
235 2v5f_A Prolyl 4-hydroxylase su 93.3 0.4 1.4E-05 36.6 8.3 64 382-445 4-74 (104)
236 3lvg_A Clathrin heavy chain 1; 93.1 0.52 1.8E-05 46.5 10.2 341 9-375 82-536 (624)
237 2wpv_A GET4, UPF0363 protein Y 92.8 6.2 0.00021 36.8 20.6 169 148-344 35-217 (312)
238 1nzn_A CGI-135 protein, fissio 92.8 1 3.5E-05 35.5 9.8 88 332-421 18-112 (126)
239 3u64_A Protein TP_0956; tetrat 92.5 0.24 8.2E-06 45.5 6.7 63 353-415 201-272 (301)
240 4ady_A RPN2, 26S proteasome re 89.2 19 0.00066 39.1 18.5 18 85-102 383-400 (963)
241 3o48_A Mitochondria fission 1 89.1 3.2 0.00011 32.9 9.4 45 401-445 61-106 (134)
242 2ff4_A Probable regulatory pro 89.1 1 3.5E-05 44.0 8.3 68 386-453 174-246 (388)
243 4b4t_P 26S proteasome regulato 88.3 10 0.00035 37.6 15.0 252 24-275 30-323 (445)
244 2p58_C Putative type III secre 87.2 7.4 0.00025 28.9 9.4 87 125-216 21-107 (116)
245 2uwj_G Type III export protein 86.9 6.9 0.00024 29.0 9.1 87 125-216 20-106 (115)
246 3txn_A 26S proteasome regulato 86.7 20 0.00068 34.7 15.4 58 320-377 104-165 (394)
247 2wpv_A GET4, UPF0363 protein Y 86.4 21 0.00072 33.2 18.6 153 26-189 13-177 (312)
248 2p58_C Putative type III secre 85.9 8.9 0.0003 28.5 9.5 86 227-319 22-107 (116)
249 3ffl_A Anaphase-promoting comp 85.7 6.7 0.00023 32.5 9.8 23 356-378 127-149 (167)
250 4fhn_B Nucleoporin NUP120; pro 84.8 25 0.00086 39.7 17.5 164 48-229 815-988 (1139)
251 2uwj_G Type III export protein 84.7 6.2 0.00021 29.3 7.9 87 24-115 20-106 (115)
252 4ady_A RPN2, 26S proteasome re 84.6 50 0.0017 36.0 27.4 249 155-411 383-657 (963)
253 4h7y_A Dual specificity protei 84.2 16 0.00053 29.8 12.0 60 191-251 74-133 (161)
254 1v54_E Cytochrome C oxidase po 84.2 6.9 0.00024 29.2 8.1 63 294-360 26-88 (109)
255 1v54_E Cytochrome C oxidase po 82.6 7.8 0.00027 29.0 7.8 60 94-154 28-87 (109)
256 3lpz_A GET4 (YOR164C homolog); 82.1 34 0.0012 32.1 21.4 131 47-188 37-178 (336)
257 4gns_B Protein CSD3, chitin bi 81.6 14 0.00048 39.2 12.7 53 221-274 346-398 (754)
258 2ff4_A Probable regulatory pro 81.5 5.5 0.00019 38.8 9.2 66 284-352 177-246 (388)
259 3lpz_A GET4 (YOR164C homolog); 81.1 37 0.0013 31.9 26.7 168 148-343 37-215 (336)
260 3ltj_A Alpharep-4; protein eng 79.2 29 0.00098 29.5 17.2 50 42-91 25-74 (201)
261 3ffl_A Anaphase-promoting comp 78.5 15 0.00053 30.3 9.3 23 421-443 126-148 (167)
262 3o48_A Mitochondria fission 1 78.4 14 0.00046 29.3 8.6 71 349-419 38-114 (134)
263 1y8m_A FIS1; mitochondria, unk 78.3 23 0.00077 28.5 10.0 72 348-419 36-113 (144)
264 4fhn_B Nucleoporin NUP120; pro 77.9 15 0.0005 41.6 12.4 124 320-449 817-970 (1139)
265 2y69_E Cytochrome C oxidase su 77.3 11 0.00037 29.9 7.5 60 296-359 71-130 (152)
266 4b4t_P 26S proteasome regulato 77.2 59 0.002 32.1 21.4 96 282-377 141-244 (445)
267 1wdy_A 2-5A-dependent ribonucl 75.5 45 0.0015 29.9 13.7 52 16-71 8-62 (285)
268 3ltm_A Alpha-REP4; protein eng 75.0 39 0.0013 28.9 19.5 89 246-341 94-182 (211)
269 2qx5_A Nucleoporin NIC96; mRNA 74.2 88 0.003 32.6 16.8 32 351-382 533-569 (661)
270 2y69_E Cytochrome C oxidase su 73.0 18 0.00063 28.6 7.8 60 94-154 71-130 (152)
271 1wdy_A 2-5A-dependent ribonucl 71.2 57 0.0019 29.1 12.9 207 49-271 6-240 (285)
272 1zbp_A Hypothetical protein VP 70.5 9.1 0.00031 34.6 6.5 57 360-416 6-64 (273)
273 1zbp_A Hypothetical protein VP 70.1 63 0.0021 29.2 12.4 52 288-342 7-58 (273)
274 3kea_A K1L; tropism, ANK repea 67.9 36 0.0012 31.0 10.6 19 52-70 35-53 (285)
275 3kea_A K1L; tropism, ANK repea 62.4 60 0.0021 29.4 11.0 139 20-171 38-183 (285)
276 4b4t_R RPN7, 26S proteasome re 62.0 51 0.0017 32.3 10.9 59 283-341 136-194 (429)
277 1k1a_A B-cell lymphoma 3-encod 60.7 61 0.0021 28.1 10.5 24 85-108 15-38 (241)
278 2qx5_A Nucleoporin NIC96; mRNA 57.8 68 0.0023 33.4 11.2 44 78-123 155-198 (661)
279 4b4t_R RPN7, 26S proteasome re 56.2 59 0.002 31.8 10.2 33 414-448 344-376 (429)
280 2nsz_A Programmed cell death p 54.8 66 0.0022 25.3 8.3 64 149-212 10-78 (129)
281 3ltj_A Alpharep-4; protein eng 54.4 96 0.0033 26.0 20.2 18 210-227 88-105 (201)
282 3esl_A Checkpoint serine/threo 54.3 1E+02 0.0035 26.3 13.2 88 385-498 82-171 (202)
283 3eu9_A Huntingtin-interacting 54.0 43 0.0015 29.0 8.2 49 21-73 17-67 (240)
284 3hra_A Ankyrin repeat family p 49.7 83 0.0028 26.3 9.1 17 56-72 13-29 (201)
285 1k1a_A B-cell lymphoma 3-encod 49.7 1.3E+02 0.0043 26.0 13.1 82 18-100 14-100 (241)
286 3eu9_A Huntingtin-interacting 48.2 69 0.0024 27.6 8.6 108 55-171 16-131 (240)
287 4a1g_A Mitotic checkpoint seri 46.3 1.2E+02 0.004 24.6 9.4 50 401-450 83-134 (152)
288 2ion_A PDCD4, programmed cell 46.1 60 0.0021 26.4 7.0 64 149-212 12-80 (152)
289 3ltm_A Alpha-REP4; protein eng 45.1 1.4E+02 0.0048 25.2 19.9 128 170-306 57-184 (211)
290 1n11_A Ankyrin; clathrin, BAND 42.5 69 0.0024 31.1 8.4 113 50-172 16-136 (437)
291 2d2s_A Exocyst complex compone 41.7 62 0.0021 28.6 6.9 89 285-377 25-117 (235)
292 3ljn_A Hypothetical protein; a 41.6 84 0.0029 29.5 8.6 52 51-102 56-107 (364)
293 2l0z_A Glycoprotein G2; zinc-b 41.1 7.8 0.00027 23.0 0.6 17 569-585 12-29 (42)
294 2rfa_A Transient receptor pote 41.0 1.7E+02 0.0057 25.0 10.0 21 188-208 162-182 (232)
295 3jxi_A Vanilloid receptor-rela 40.8 39 0.0013 30.0 5.7 57 13-70 6-71 (260)
296 2zu6_B Programmed cell death p 40.0 1.6E+02 0.0053 27.3 9.6 66 281-350 169-236 (307)
297 2wvi_A Mitotic checkpoint seri 39.7 1.6E+02 0.0054 24.2 9.5 49 402-450 79-129 (164)
298 3jxi_A Vanilloid receptor-rela 39.7 41 0.0014 29.8 5.7 53 85-137 11-72 (260)
299 2d2s_A Exocyst complex compone 39.4 1.6E+02 0.0054 25.9 9.2 21 184-204 25-45 (235)
300 3mv2_A Coatomer subunit alpha; 39.2 2.4E+02 0.0082 26.2 11.8 59 374-446 196-256 (325)
301 3b7b_A Euchromatic histone-lys 38.2 1.7E+02 0.0058 25.0 9.6 139 20-172 18-167 (237)
302 3eiq_C Programmed cell death p 35.1 3E+02 0.01 26.0 15.4 28 48-75 57-84 (358)
303 4b4t_S RPN3, 26S proteasome re 35.1 1.2E+02 0.004 30.5 8.2 61 315-377 231-296 (523)
304 4gq2_M Nucleoporin NUP120; bet 34.4 3.7E+02 0.012 29.5 13.1 86 321-412 816-926 (950)
305 1oyz_A Hypothetical protein YI 33.8 2.5E+02 0.0086 24.9 21.9 243 66-327 27-279 (280)
306 3txn_A 26S proteasome regulato 33.7 3.3E+02 0.011 26.2 25.8 88 348-448 253-345 (394)
307 3hra_A Ankyrin repeat family p 33.1 1.3E+02 0.0046 24.9 7.8 152 85-246 11-172 (201)
308 2r9g_A AAA ATPase, central reg 33.0 2.2E+02 0.0077 24.2 8.4 62 81-143 16-85 (204)
309 1bd8_A P19INK4D CDK4/6 inhibit 31.0 98 0.0033 24.5 6.2 18 154-171 106-123 (156)
310 2nsz_A Programmed cell death p 30.7 1E+02 0.0035 24.1 5.8 65 180-245 10-76 (129)
311 2lo3_A SAGA-associated factor 30.6 14 0.00047 22.2 0.5 12 542-553 16-27 (44)
312 1qsa_A Protein (soluble lytic 29.6 4.8E+02 0.016 26.8 36.0 377 48-451 75-484 (618)
313 3bqo_A Telomeric repeat-bindin 28.7 2.7E+02 0.0093 23.6 8.4 35 390-424 124-158 (211)
314 2fe3_A Peroxide operon regulat 27.5 1.1E+02 0.0037 24.5 5.6 36 126-161 36-71 (145)
315 3aji_A 26S proteasome non-ATPa 26.8 2E+02 0.0067 24.5 7.9 19 52-70 10-28 (231)
316 3ygs_P Procaspase 9; apoptosis 26.5 58 0.002 24.0 3.5 37 59-95 51-87 (97)
317 1bpo_A Protein (clathrin); cla 26.4 4.2E+02 0.014 26.1 10.1 139 32-179 348-489 (494)
318 2pk8_A Uncharacterized protein 26.4 50 0.0017 23.9 2.8 47 474-528 13-59 (103)
319 2ion_A PDCD4, programmed cell 26.0 1.3E+02 0.0045 24.3 5.8 65 180-245 12-78 (152)
320 3qye_A TBC1 domain family memb 25.4 4E+02 0.014 24.6 11.1 129 90-225 163-307 (331)
321 2k0q_A Putative uncharacterize 25.4 22 0.00077 24.1 0.9 23 562-584 8-30 (74)
322 3b7b_A Euchromatic histone-lys 24.8 2E+02 0.0069 24.5 7.6 171 21-205 52-235 (237)
323 3aji_A 26S proteasome non-ATPa 24.3 3.2E+02 0.011 23.0 10.7 144 17-171 10-161 (231)
324 1ug3_A EIF4GI, eukaryotic prot 23.3 4.5E+02 0.016 24.4 10.4 61 150-210 15-79 (339)
325 1n11_A Ankyrin; clathrin, BAND 22.5 4.5E+02 0.016 25.0 10.4 79 85-171 20-102 (437)
326 3d9h_A CDNA FLJ77766, highly s 22.4 2.9E+02 0.01 24.6 8.4 20 48-67 15-34 (285)
327 2xig_A Ferric uptake regulatio 22.2 1.4E+02 0.0049 23.9 5.5 60 102-162 18-77 (150)
328 2o03_A Probable zinc uptake re 22.1 1.3E+02 0.0044 23.5 5.0 45 82-126 16-60 (131)
329 3ctd_A Putative ATPase, AAA fa 21.8 3.4E+02 0.011 23.3 7.6 66 78-143 34-107 (213)
330 2etb_A Transient receptor pote 21.4 84 0.0029 27.7 4.3 53 17-70 6-68 (256)
331 4ets_A Ferric uptake regulatio 21.2 1.2E+02 0.004 24.9 4.8 69 93-162 14-85 (162)
332 2zu6_B Programmed cell death p 20.9 2.5E+02 0.0084 25.9 7.3 63 149-211 169-236 (307)
333 3esl_A Checkpoint serine/threo 20.9 3.9E+02 0.013 22.8 9.7 57 292-350 93-149 (202)
334 3ygs_P Procaspase 9; apoptosis 20.9 1E+02 0.0035 22.6 3.9 37 261-297 51-87 (97)
335 3mwm_A ZUR, putative metal upt 20.9 1.1E+02 0.0038 24.2 4.4 43 82-124 19-61 (139)
336 1mzb_A Ferric uptake regulatio 20.8 3E+02 0.01 21.4 7.4 60 201-261 7-67 (136)
337 2b7e_A PRE-mRNA processing pro 20.7 84 0.0029 20.7 2.9 30 92-121 2-31 (59)
338 2w57_A Ferric uptake regulatio 20.7 3.2E+02 0.011 21.7 7.8 62 201-263 6-68 (150)
339 4b4t_S RPN3, 26S proteasome re 20.5 2.1E+02 0.0073 28.6 7.1 27 351-377 231-257 (523)
340 3bge_A Predicted ATPase; struc 20.5 2.5E+02 0.0085 23.8 6.5 41 82-122 10-53 (201)
341 2rfa_A Transient receptor pote 20.3 3E+02 0.01 23.3 7.8 47 199-245 136-184 (232)
342 2hgo_A CASSIICOLIN; toxin, dis 20.3 24 0.00083 18.0 0.2 13 574-586 8-22 (27)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-40 Score=351.13 Aligned_cols=429 Identities=10% Similarity=-0.058 Sum_probs=383.4
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCC--CCCcccHHHHHHH
Q 007881 8 PNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMP--ERNLATWNAYISN 85 (586)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 85 (586)
|+...|+.++..+.+.|++++|..+++.+.+. .|+..++..++..|.+.|++++|..+|+.+. .+++.+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 56778999999999999999999999999864 4788899999999999999999999999984 5789999999999
Q ss_pred HHcCCChhHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 007881 86 AVLGGRPKNAIDAFINLRRT---------------GGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
|.+.|++++|+++|+++... |..++..+++.++.++.+.|++++|.++|+++.+.+ +.+...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence 99999999999999954221 223457899999999999999999999999999885 22333333
Q ss_pred --------------------------------------HHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHc
Q 007881 151 --------------------------------------GLVDFYGKCNEVGLAKVVFDGIID--KNDVSWCSMLVVYVQN 190 (586)
Q Consensus 151 --------------------------------------~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 190 (586)
.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 335667788999999999999987 7999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007881 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAF 270 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 270 (586)
|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..++..+.+..+ .+..+++.++.+|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999865 34778899999999999999999999999997764 37889999999999999999999999
Q ss_pred hhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCC
Q 007881 271 NKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI 347 (586)
Q Consensus 271 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 347 (586)
+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+ .+ +++..++..++.+|.+.|++++|.++|+.+.+. .
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 471 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--F 471 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 98753 5678999999999999999999999999988 32 347899999999999999999999999999864 2
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch
Q 007881 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 418 (586)
+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+|+++.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 446889999999999999999999999998 44787 789999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 419 NHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+|..++.+|.+.|++++|.+.++++.+.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-37 Score=326.77 Aligned_cols=414 Identities=10% Similarity=-0.069 Sum_probs=364.5
Q ss_pred CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCC-----------
Q 007881 6 ISPNDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPER----------- 74 (586)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------- 74 (586)
..||..++..++.+|...|++++|..+|+.+... ++++.+++.++.+|.+.|++++|.++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4588899999999999999999999999988653 688999999999999999999999999964433
Q ss_pred --------CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHH------------------------------
Q 007881 75 --------NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA------------------------------ 116 (586)
Q Consensus 75 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~------------------------------ 116 (586)
++.+|+.++.+|.+.|++++|+++|++|.+.++. +...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 4789999999999999999999999999885422 2223222
Q ss_pred --------HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 007881 117 --------FLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGII---DKNDVSWCSMLV 185 (586)
Q Consensus 117 --------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 185 (586)
++..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 244566778899999999998876 5889999999999999999999999999984 347789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007881 186 VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (586)
+|.+.|++++|.++|+++.... +.+..++..+...+.+.|++++|.+++..+.+..+. +..+++.++.+|.+.|++++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998653 557889999999999999999999999999987654 78899999999999999999
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+ .. +.+..+|+.++..|.+.|++++|.++|+.+.
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999998753 5789999999999999999999999999988 32 3468899999999999999999999999997
Q ss_pred Hhc---CCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 343 LKY---GIKPG--AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 343 ~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 642 55787 789999999999999999999999997 3334 7899999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhh
Q 007881 416 DSGNHVLLSNMFAA 429 (586)
Q Consensus 416 ~~~~~~~l~~~~~~ 429 (586)
++..+..++++|..
T Consensus 583 ~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 583 EIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHhc
Confidence 99999999887753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.5e-29 Score=257.70 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccC---------cHHHHHHHHHHHHhCCCCchh
Q 007881 178 VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG---------LELGRSVHAVAVKACVEGNIF 248 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 248 (586)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35677788888888888888888888888999999999999988876553 577888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007881 249 VGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
+||+||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+ .|+.||..||++||.+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE--SEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHH
Confidence 999999999999999999999988863 8889999999999999999999999999988 8889999999999999
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007881 325 CSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRA 364 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 364 (586)
|++.|++++|.++|++|.+. +..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999665 8899999999988888753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=9.9e-29 Score=254.34 Aligned_cols=184 Identities=10% Similarity=0.065 Sum_probs=165.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCChh
Q 007881 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL---------LQLGRQLHGFLVRSGFDGNVS 147 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 147 (586)
..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678899999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007881 148 VCNGLVDFYGKCNEVGLAKVVFDGI----IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
+||+||++|++.|++++|.++|++| ..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999888 357888999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007881 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC 260 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (586)
+.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.9e-26 Score=232.66 Aligned_cols=338 Identities=11% Similarity=0.030 Sum_probs=207.7
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
.+.+.|++++|...++...... +.+..+|..+..++.+.|++++|...++.+++.. +.+...+..+..+|.+.|++++
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444433321 1233344444444444444444444444444432 2223344444444444444444
Q ss_pred HHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 007881 165 AKVVFDGIID--K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241 (586)
Q Consensus 165 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (586)
|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++++.
T Consensus 120 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444444321 1 22334444455555555555555555555432 223445555555555566666666666665555
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHH
Q 007881 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVT 317 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t 317 (586)
++. +...+..+...+...|++++|...|++..+ .+..+|..+...|.+.|++++|++.|+++.+ . .| +..+
T Consensus 199 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~ 273 (388)
T 1w3b_A 199 DPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--L--QPHFPDA 273 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T--CSSCHHH
T ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h--CCCCHHH
Confidence 433 455566666667777777777777665542 3456777777788888888888888888877 2 24 3567
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 007881 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRV 395 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 395 (586)
+..+..++.+.|++++|...|+.+.+. .+++...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+..
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 778888888888888888888888653 2445778888888888888888888888887 4444 46778888888888
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007881 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
.|++++|...++++.++.|+++..+..++..+...|+
T Consensus 352 ~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 8888888888888888888888888888887766653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.4e-25 Score=226.29 Aligned_cols=350 Identities=15% Similarity=0.125 Sum_probs=306.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007881 83 ISNAVLGGRPKNAIDAFINLRRTGGEPD-LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
...+.+.|++++|++.++++.+. .|+ ...+..+...+...|++++|...++.+++.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45677889999999999998775 354 4456666777888999999999999998875 6678899999999999999
Q ss_pred hHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcccCcHHHHHHHHH
Q 007881 162 VGLAKVVFDGIID--K-NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKD-FMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 162 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
+++|...|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998743 3 4568999999999999999999999999875 4554 4566677788889999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-
Q 007881 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP- 313 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p- 313 (586)
+.+..+. +..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++... +.|
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~ 235 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS----LSPN 235 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH----HCTT
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCcC
Confidence 9988654 678899999999999999999999999864 4567888999999999999999999999988 235
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALL 390 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 390 (586)
+..++..+..++...|++++|...|+.+.+. .| +...|..+...|.+.|++++|.+.++++ ..+++..+|..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 4788999999999999999999999999753 44 4778999999999999999999999998 2335788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..+...|++++|...++++.+..|++..++..++.+|.+.|++++|.+.++++.+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999986
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.3e-23 Score=213.79 Aligned_cols=393 Identities=11% Similarity=-0.035 Sum_probs=317.9
Q ss_pred hhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 007881 45 VFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
...+..+...+.+.|++++|+..|+++.. |+..+|..+..++.+.|++++|+..|+++.+.++ .+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34566778889999999999999998864 8888999999999999999999999999988642 25678889999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH---------------------------------
Q 007881 123 DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVF--------------------------------- 169 (586)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~--------------------------------- 169 (586)
..|++++|...++.+.+.+ +++......++..+.+......+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998886 344444445555444433222222222
Q ss_pred -----hcCC---------CC-ChhhHHHHHHHHHH---cCChHHHHHHHHHHHH-----CCCCC--------CHhHHHHH
Q 007881 170 -----DGII---------DK-NDVSWCSMLVVYVQ---NYEEENGCQMFLTARR-----EGVEP--------KDFMISSV 218 (586)
Q Consensus 170 -----~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 218 (586)
.... .+ +...|......+.. .|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1110 01 13344444444554 8999999999999987 32122 34567778
Q ss_pred HHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH
Q 007881 219 LSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 295 (586)
...+...|++++|...+..+.+..+. ..++..+...|...|++++|...|+++.+ .+..+|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999998766 88899999999999999999999998754 46778999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 007881 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIK 375 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 375 (586)
+|+..|++..+ .. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++
T Consensus 322 ~A~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKE--LD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHH--TC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988 32 225678889999999999999999999999764 23357788999999999999999999999
Q ss_pred hC----CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 376 EM----PMRPT----ISVWGALLNACRV---YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 376 ~m----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
++ +..|+ ..+|..+...+.. .|++++|...++++.+..|+++.++..++.+|...|++++|...+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 87 22233 4489999999999 9999999999999999999999999999999999999999999999998
Q ss_pred hC
Q 007881 445 DV 446 (586)
Q Consensus 445 ~~ 446 (586)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.6e-22 Score=206.46 Aligned_cols=319 Identities=10% Similarity=0.048 Sum_probs=220.2
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007881 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44556666777777777777777777776542 2255666677777777777777777777777664 345566667777
Q ss_pred HHHhcCChHHHHHHHhcCCCCC---h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCc
Q 007881 155 FYGKCNEVGLAKVVFDGIIDKN---D---VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGL 228 (586)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 228 (586)
+|.+.|++++|...|+++...+ . ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 7777777777777776664322 2 44444433311111 11122233445555
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007881 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
++|...+..+.+..+. +..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555554432 455666666666777777777766666543 456677777777888888888888888877
Q ss_pred hccCCCCCCH-HHHHHH------------HHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCh
Q 007881 306 SMRCEAVPNY-VTLVCV------------LSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACVVDLLGRAGLV 367 (586)
Q Consensus 306 ~~~~g~~pd~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~ 367 (586)
. ..|+. ..+..+ ..+|.+.|++++|...|+.+.+. .|+ ..+|..+..++.+.|++
T Consensus 239 ~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 239 K----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp H----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred H----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 6 23443 333333 78889999999999999999764 454 45788999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007881 368 DRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 368 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
++|++.++++ ...| +..+|..+..+|...|++++|...+++++++.|+++..+..++.+
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999987 4344 688999999999999999999999999999999999999888843
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.7e-23 Score=213.63 Aligned_cols=403 Identities=11% Similarity=-0.098 Sum_probs=318.9
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHc
Q 007881 12 TFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVL 88 (586)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 88 (586)
.+...-..+...|++++|...|..+++.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45566677889999999999999999986 7899999999999999999999999998753 356789999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH------------------------------
Q 007881 89 GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLV------------------------------ 138 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~------------------------------ 138 (586)
.|++++|+..|+++...+. ++......++..+........+.+.+..+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988753 344444444443332222222221111100
Q ss_pred -----HhCC---------CCChhHHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-ChhhHHHHH
Q 007881 139 -----RSGF---------DGNVSVCNGLVDFYGK---CNEVGLAKVVFDGIID----------------K-NDVSWCSML 184 (586)
Q Consensus 139 -----~~g~---------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 184 (586)
.... +.+...+..+...+.. .|++++|...|+++.. + +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 0000 1113444444444554 8999999999987644 1 345788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007881 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQ 264 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 264 (586)
..+...|++++|+..|+++.... |+...+..+..++...|++++|...+..+.+..+. +..++..+...|.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998864 44778888899999999999999999999887654 6778899999999999999
Q ss_pred HHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007881 265 DAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 265 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
+|...|++..+ .+..+|..+...|...|++++|+..|+++.+ .. +.+..++..+...+...|++++|...|+.+
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998653 4677899999999999999999999999988 22 235678889999999999999999999998
Q ss_pred HHhcCCCCC----hHHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007881 342 TLKYGIKPG----AEHYACVVDLLGR---AGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 342 ~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
.....-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 764322333 4488999999999 99999999999987 3333 6778899999999999999999999999999
Q ss_pred CCCCchhHHHH
Q 007881 413 DPNDSGNHVLL 423 (586)
Q Consensus 413 ~p~~~~~~~~l 423 (586)
.|.++..+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 99987776655
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.2e-21 Score=201.47 Aligned_cols=358 Identities=10% Similarity=-0.024 Sum_probs=222.0
Q ss_pred HHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 007881 29 GKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRT 105 (586)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 105 (586)
+...+..++... +.+...+..+...|.+.|++++|+.+|+++.. .+..+|..+...+.+.|++++|+..|+++.+.
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334444444433 45677888999999999999999999998753 46778999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH
Q 007881 106 GGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNV---SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCS 182 (586)
Q Consensus 106 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 182 (586)
+. .+..++..+..++...|++++|.+.++.+.+.. +.+. ..+..+...+...+ +..
T Consensus 90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-------------------~~~ 148 (450)
T 2y4t_A 90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR-------------------LRS 148 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-------------------HHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-------------------HHH
Confidence 43 256788889999999999999999999998764 3334 56666655422111 122
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007881 183 MLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
+...+.+.|++++|+..|+++.... +.+...+..+..++...|++++|...+..+.+..+. +..++..+...|.+.|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 2333444555555555555554432 223444555555555555555555555555544322 44555555555555555
Q ss_pred HHHHHHHHhhCCC--C-CeeHHHHH------------HHHHHhcCCHHHHHHHHHHhhhccCCCCCC-----HHHHHHHH
Q 007881 263 IQDAEIAFNKMPE--R-NLVCWNAI------------IGGYAHQGHADMALSSFEEMTSMRCEAVPN-----YVTLVCVL 322 (586)
Q Consensus 263 ~~~A~~~~~~m~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-----~~t~~~ll 322 (586)
+++|...|+++.+ | +...+..+ ...+...|++++|+..|+++.+ +.|+ ...+..+.
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHH
Confidence 5555555555432 2 22223222 6667777777777777777776 2244 33566677
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH--------
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-ISVWGALLNA-------- 392 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-------- 392 (586)
.++.+.|++++|+..++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 7777777777777777777543 1234677777777777777777777777776 44454 3444444422
Q ss_pred ----HHHcC-----CHHHHHHHHHH-HhccCCCC
Q 007881 393 ----CRVYG-----KPELGRIAADN-LFKLDPND 416 (586)
Q Consensus 393 ----~~~~~-----~~~~a~~~~~~-~~~~~p~~ 416 (586)
|...| +.+++.+.+++ .++..|++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 22223 55677777775 56666653
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1e-21 Score=206.89 Aligned_cols=422 Identities=11% Similarity=-0.033 Sum_probs=317.7
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHH
Q 007881 11 FTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAV 87 (586)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 87 (586)
..|..+...+.+.|+++.|...+..+++.. +.++..+..+...|.+.|++++|++.|+++.+ .+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 445666777888999999999999999876 56788899999999999999999999988753 45678888889999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHH
Q 007881 88 LGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSG--FDGNVSVCNGLVDFYGKCNEVGLA 165 (586)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A 165 (586)
..|++++|+..|+.+.. .|+... ..+..+...+....+...++.++... ..+........+..|....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999964422 232211 11223333344567777777775431 111122234455567778888888
Q ss_pred HHHHhcCCCCChh---hHHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCC--------HhHHHHHHHHHhccc
Q 007881 166 KVVFDGIIDKNDV---SWCSMLVVYVQ--------NYEEENGCQMFLTARREGVEPK--------DFMISSVLSACARIA 226 (586)
Q Consensus 166 ~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~ 226 (586)
...+......+.. .+..+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 8887777655443 33333333322 25789999999998864 344 224556667778889
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007881 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
++++|...+..+.+..+. ...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|...|++
T Consensus 258 ~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999987654 77888899999999999999999998763 4577899999999999999999999999
Q ss_pred hhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 007881 304 MTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PM 379 (586)
Q Consensus 304 m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 379 (586)
..+ .. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+...|...|++++|.+.++++ +.
T Consensus 336 a~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 336 AQS--LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHH--HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH--hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 988 22 224678888999999999999999999999764 2344678889999999999999999999986 11
Q ss_pred C----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 380 R----PTISVWGALLNACRVY----------GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 380 ~----p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
. .....+..+...+... |++++|...++++.+..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1223345555667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 007881 446 VG 447 (586)
Q Consensus 446 ~g 447 (586)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.6e-19 Score=190.04 Aligned_cols=399 Identities=11% Similarity=-0.024 Sum_probs=296.9
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHc
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVL 88 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 88 (586)
+..+|..+..++...|++++|.+.++.+++.. +.+..++..+...|.+.|++++|...|+.+. .+....+..+..+..
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~ 135 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLE 135 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHH
Confidence 56678888889999999999999999999986 5678889999999999999999999997443 222233334555666
Q ss_pred CCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc--
Q 007881 89 GGRPKNAIDAFINLRRT------GGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGN-VSVCNGLVDFYGKC-- 159 (586)
Q Consensus 89 ~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~-- 159 (586)
.+...+|+..++++... ...|+...+.. +....+.+.+...+..... ..+. ......+...+...
T Consensus 136 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp HHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhh
Confidence 66678899999998653 12344444333 3334444444333222111 1111 11333344333322
Q ss_pred ------CChHHHHHHHhcCCCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007881 160 ------NEVGLAKVVFDGIIDKN----------DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 160 ------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
|++++|..+|+++.+.+ ..+|..+...+...|++++|+..|++.... .|+...+..+...+.
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 47889999998885532 224667778889999999999999999885 466788888899999
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHH
Q 007881 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSS 300 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 300 (586)
..|++++|...+..+.+..+. +..++..+...|...|++++|.+.|++..+ .+..+|..+...|...|++++|.+.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999988765 678899999999999999999999998763 4567899999999999999999999
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhc----------CC
Q 007881 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP----GAEHYACVVDLLGRA----------GL 366 (586)
Q Consensus 301 ~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~ 366 (586)
|+++.+ .. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |+
T Consensus 367 ~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 367 FNETKL--KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHH--HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHH--hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 999988 32 23467888999999999999999999999875421111 123345556777787 99
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHH
Q 007881 367 VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHV 421 (586)
Q Consensus 367 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 421 (586)
+++|...|+++ ...| +..+|..+...+...|++++|...++++.++.|.+.....
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999987 3333 6788999999999999999999999999999998766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=3.3e-18 Score=169.63 Aligned_cols=320 Identities=11% Similarity=0.027 Sum_probs=205.5
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007881 76 LATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDF 155 (586)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 155 (586)
+..|..+...+...|++++|+..|+++..... .+..++..+...+...|++++|...++.+++.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34455666667777777777777777665432 245566666666666677777777776666653 3344556666666
Q ss_pred HHhcCChHHHHHHHhcCCCCCh------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007881 156 YGKCNEVGLAKVVFDGIIDKND------VSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
|.+.|++++|...|++..+.++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666655533222 12222210000 001112234556667777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+|...+..+.+..+. +..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777666543 566677777777778888888777777543 4556777777778888888888888888776
Q ss_pred ccCCCCCC-HHHHH------------HHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCChH
Q 007881 307 MRCEAVPN-YVTLV------------CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA-----EHYACVVDLLGRAGLVD 368 (586)
Q Consensus 307 ~~~g~~pd-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~ 368 (586)
. .|+ ...+. .+...+.+.|++++|...++.+.+. .|+. ..+..+...+.+.|+++
T Consensus 217 --~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 217 --L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp --H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 2 233 22222 2255677888888888888887654 3332 23455677888888888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 369 RAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 369 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
+|.+.+++. ...| +..+|..+...+...|++++|...++++.+++|++...+..+..++.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 888888876 3334 67778888888888888888888888888888888777777666543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=6e-18 Score=167.74 Aligned_cols=304 Identities=10% Similarity=0.016 Sum_probs=232.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 007881 111 LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVY 187 (586)
Q Consensus 111 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 187 (586)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456666777777888888888888877764 44566777777777888888888877776632 2456677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC---CHh-HHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007881 188 VQNYEEENGCQMFLTARREGVEP---KDF-MISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
...|++++|+..|++..+. .| +.. .+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777653 34 211 11111110 00 11233456788999999
Q ss_pred HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007881 264 QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYS 340 (586)
Q Consensus 264 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 340 (586)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+ .. +.+..++..+...+...|++++|...|+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 5677889999999999999999999999988 32 34678899999999999999999999999
Q ss_pred hHHhcCCCCC-hHHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHH
Q 007881 341 MTLKYGIKPG-AEHYA------------CVVDLLGRAGLVDRAYEIIKEM-PMRPT-I----SVWGALLNACRVYGKPEL 401 (586)
Q Consensus 341 ~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~ 401 (586)
..+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++
T Consensus 214 a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 9764 344 33322 3366789999999999999987 33344 2 235567788999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 402 GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
|...++++.+..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999864
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2.2e-19 Score=176.23 Aligned_cols=347 Identities=13% Similarity=0.074 Sum_probs=163.0
Q ss_pred HhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 007881 56 SKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHG 135 (586)
Q Consensus 56 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 135 (586)
-+.|++++|.++++++..|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999997665 8999999999999999999999752 577899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH
Q 007881 136 FLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMI 215 (586)
Q Consensus 136 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 215 (586)
..++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77775 45678899999999999999999988864 67789999999999999999999999876 369
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHH
Q 007881 216 SSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 295 (586)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999888 278999999999999999999988877765 33444556889999999999
Q ss_pred HHHHHHHHhhhccCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHhcCCh
Q 007881 296 MALSSFEEMTSMRCEAVPNYV--TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP------GAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~ 367 (586)
+|+.+++..... . +-... |...++-+-.+.+++.+.++.|..- -+++| +...|.-++-.|..-+++
T Consensus 225 Eai~lLe~aL~l--e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 225 ELITMLEAALGL--E-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHTTS--T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCC--c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999998762 2 22233 4444454555566777777777533 25555 467889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 368 DRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 368 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+.|...+-+-+ |+..--..+.....+-.+.|.--+...-.++..| ...+.|..++...=+...+.+++++
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 99987665542 2222222333333444454443333333333333 3344455555444455555544443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.6e-18 Score=164.31 Aligned_cols=287 Identities=11% Similarity=-0.034 Sum_probs=202.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007881 143 DGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVL 219 (586)
Q Consensus 143 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 219 (586)
+.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455555666666666666666666665532 234455556666666777777777777666542 22445566666
Q ss_pred HHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH
Q 007881 220 SACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 220 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 295 (586)
..+...| ++++|...+..+.+..+. +...+..+...|...|++++|.+.|++..+ .+..+|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666667 677777777777665543 456677777778888888888887777653 34566777788888888888
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHhcCChH
Q 007881 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYG-------IKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~ 368 (586)
+|.+.|++..+ .. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|+++
T Consensus 177 ~A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS--IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT--TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH--hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 88888888877 22 23467777888888888888888888888765321 1334678888888999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCChH
Q 007881 369 RAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF-AATGRWE 434 (586)
Q Consensus 369 ~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 434 (586)
+|.+.+++. ... .+..+|..+...+...|++++|...++++.+++|+++..+..++..+ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999988887 222 35678888888999999999999999999999999998888888887 4555543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.1e-16 Score=165.86 Aligned_cols=393 Identities=9% Similarity=0.027 Sum_probs=248.6
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 007881 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLN 119 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 119 (586)
.+...|..++. +.+.|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...|...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 34455555555 2455566666666655543 2 3334555555555566666666666665543 244444443332
Q ss_pred HH-hcCCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHhcCCC-CCh---hh
Q 007881 120 AC-SDCSLLQLGRQ----LHGFLVRS-GFDG-NVSVCNGLVDFYGK---------CNEVGLAKVVFDGIID-KND---VS 179 (586)
Q Consensus 120 ~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~ 179 (586)
.. ...|+.+.|.+ +|+.+++. |..| +...|...+....+ .|+++.|..+|++... |+. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 11 22344443333 44444432 3322 23455555554433 4566666666665433 111 12
Q ss_pred HHHHHHHH-------------HHcCChHHHHHHHHHHH------HCC---CCCCH--------hHHHHHHHHHhc----c
Q 007881 180 WCSMLVVY-------------VQNYEEENGCQMFLTAR------REG---VEPKD--------FMISSVLSACAR----I 225 (586)
Q Consensus 180 ~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~~~~~----~ 225 (586)
|....... .+.+++.+|..+++++. +.. ++|+. ..|...+..... .
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22211100 12345667777766532 111 24431 233333322221 1
Q ss_pred cCc----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhhCCC---C-CeeHHHH
Q 007881 226 AGL----ELGRSVHAVAVKACVEGNIFVGSALVDMYGK-------CGSIQ-------DAEIAFNKMPE---R-NLVCWNA 283 (586)
Q Consensus 226 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~---~-~~~~~~~ 283 (586)
++. +.+..++++++...+. +..+|..++..+.+ .|+++ +|..+|++..+ | +...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 3667788888887544 67788888888875 69877 89999998763 3 4678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 007881 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNY--VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDL 360 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 360 (586)
++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|+.+|+...+. .|+ ...|......
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhC----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 99999999999999999999998 34653 47888888888999999999999999753 343 3334333322
Q ss_pred -HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch----hHHHHHHHHhhcCCh
Q 007881 361 -LGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG----NHVLLSNMFAATGRW 433 (586)
Q Consensus 361 -~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~ 433 (586)
+...|+.++|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++. .+...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999987 3334 5788999999999999999999999999998776554 677777878889999
Q ss_pred HHHHHHHHHHHhC
Q 007881 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
+.+..+.+++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=5.2e-16 Score=161.20 Aligned_cols=375 Identities=10% Similarity=-0.046 Sum_probs=300.6
Q ss_pred HHHHHHHHHhCCCCChhhhHHHHHHHHh----cCCchHHHHHhccCCC-CCcccHHHHHHHHHc----CCChhHHHHHHH
Q 007881 30 KQLHALALKSGQIHDVFVGCSAFDMYSK----TGLKDDADKMFDEMPE-RNLATWNAYISNAVL----GGRPKNAIDAFI 100 (586)
Q Consensus 30 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 100 (586)
...+....+ ..++..+..|...|.. .+++++|...|++..+ .+..++..|-..|.. .+++++|+..|+
T Consensus 27 ~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 344444444 3467777888888887 8999999999987654 467778888888888 899999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcC
Q 007881 101 NLRRTGGEPDLITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK----CNEVGLAKVVFDGI 172 (586)
Q Consensus 101 ~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~ 172 (586)
+..+.| +...+..+...+.. .++.++|...++...+.| +...+..|..+|.. .++.++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998865 55667777777776 789999999999998876 56778888888887 78999999999876
Q ss_pred CC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----ccCcHHHHHHHHHHHHhCC
Q 007881 173 ID-KNDVSWCSMLVVYVQ----NYEEENGCQMFLTARREGVEPKDFMISSVLSACAR----IAGLELGRSVHAVAVKACV 243 (586)
Q Consensus 173 ~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 243 (586)
.+ .+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|...+....+.+
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 44 467788888888888 899999999999998865 55666667777665 788999999999988765
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHHHHHHhc-----CCHHHHHHHHHHhhhccCCCCC
Q 007881 244 EGNIFVGSALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAIIGGYAHQ-----GHADMALSSFEEMTSMRCEAVP 313 (586)
Q Consensus 244 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~g~~p 313 (586)
+...+..+..+|.. .++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+ .+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~--~~--- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE--QG--- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH--TT---
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh--cC---
Confidence 45677778888887 8999999999998765 5667778888888877 899999999999988 44
Q ss_pred CHHHHHHHHHHhhccC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHH
Q 007881 314 NYVTLVCVLSACSRAG---AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR----AGLVDRAYEIIKEMPMRPTISVW 386 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~ 386 (586)
+...+..+...|...| +.++|+..|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 4566677777777656 789999999998753 467788888899988 89999999999987333467788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhccCCC---CchhHHHHHHHHh
Q 007881 387 GALLNACRV----YGKPELGRIAADNLFKLDPN---DSGNHVLLSNMFA 428 (586)
Q Consensus 387 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 428 (586)
..|...|.. .++.++|...++++.+.+|+ ++.....++.++.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 888888888 89999999999999999854 5666666655444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.8e-17 Score=158.69 Aligned_cols=264 Identities=11% Similarity=-0.026 Sum_probs=228.9
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007881 175 KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV 254 (586)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 254 (586)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+.+..+. +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466778888999999999999999999998764 334556667788889999999999999999998755 677888999
Q ss_pred HHHHhcC-CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC
Q 007881 255 DMYGKCG-SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA 330 (586)
Q Consensus 255 ~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~ 330 (586)
..|...| ++++|.+.|++..+ .+...|..+...+...|++++|++.|+++.+ .. +.+...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hc-cccHHHHHHHHHHHHHHhh
Confidence 9999999 99999999998754 4567899999999999999999999999988 22 2245677779999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCH
Q 007881 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM----------RPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~~~~ 399 (586)
+++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ .. ..+..+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999753 2345788999999999999999999999886 11 23467899999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++|...++++.+..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998765
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.7e-17 Score=165.52 Aligned_cols=277 Identities=10% Similarity=-0.025 Sum_probs=213.2
Q ss_pred hcCChHHHHH-HHhcCCC---C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007881 158 KCNEVGLAKV-VFDGIID---K----NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 158 ~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665422 1 34567778888888888888888888887753 345667777778888888888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHH---------------HHHHHHhc
Q 007881 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNA---------------IIGGYAHQ 291 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~~~~ 291 (586)
+|...+..+.+..+. +..++..+...|...|++++|.+.|+++.+ | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 888888888877654 677788888888888888888888887643 2 2222211 23334488
Q ss_pred CCHHHHHHHHHHhhhccCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007881 292 GHADMALSSFEEMTSMRCEAVP---NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 292 g~~~~A~~~~~~m~~~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
|++++|+..|+++.+. .| +..++..+...+...|++++|+..|+.+... .+.+...+..+...|.+.|+++
T Consensus 195 ~~~~~A~~~~~~a~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHh----CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999882 24 4788999999999999999999999999764 2334788999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHhhcCChHH
Q 007881 369 RAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND-----------SGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 369 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 435 (586)
+|.+.++++ ...| +..+|..+...+...|++++|...++++.++.|++ ..++..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 3333 57889999999999999999999999999998877 7889999999999999999
Q ss_pred HHHHHHH
Q 007881 436 ADLVRKE 442 (586)
Q Consensus 436 a~~~~~~ 442 (586)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988764
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=5.1e-15 Score=153.69 Aligned_cols=352 Identities=11% Similarity=-0.022 Sum_probs=296.1
Q ss_pred CCcccHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCC
Q 007881 74 RNLATWNAYISNAVL----GGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGN 145 (586)
Q Consensus 74 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 145 (586)
.++.++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466777777777877 899999999999998864 56677778888877 899999999999998876 5
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHhcCCCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHH
Q 007881 146 VSVCNGLVDFYGK----CNEVGLAKVVFDGIIDK-NDVSWCSMLVVYVQ----NYEEENGCQMFLTARREGVEPKDFMIS 216 (586)
Q Consensus 146 ~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 216 (586)
...+..|..+|.. .+++++|...|++..+. ++.++..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778889999998 88999999999887543 66788888888887 889999999999998865 667777
Q ss_pred HHHHHHhc----ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHHHH
Q 007881 217 SVLSACAR----IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAIIGG 287 (586)
Q Consensus 217 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~ 287 (586)
.+...+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|.+.|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999999876 56778888888886 8899999999998764 566777888888
Q ss_pred HHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007881 288 YAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRA-----GAVEKGMKIFYSMTLKYGIKPGAEHYACVV 358 (586)
Q Consensus 288 ~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 358 (586)
|.. .++.++|+..|++..+ .+ +...+..+...|... +++++|...|+...+. .+...+..|.
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg 335 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAE--QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLG 335 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHT--TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence 887 8999999999999987 44 556667777777776 8999999999998753 2456778888
Q ss_pred HHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh--
Q 007881 359 DLLGRAG---LVDRAYEIIKEMPMRPTISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA-- 429 (586)
Q Consensus 359 ~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 429 (586)
..|...| ++++|++.|++.-...+...+..|...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 889999999988333578899999999988 899999999999999875 46788999999998
Q ss_pred --cCChHHHHHHHHHHHhCCC
Q 007881 430 --TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 430 --~g~~~~a~~~~~~m~~~g~ 448 (586)
.++.++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998764
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5e-17 Score=162.03 Aligned_cols=228 Identities=11% Similarity=0.093 Sum_probs=111.3
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007881 77 ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFY 156 (586)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 156 (586)
..|..+...+.+.|++++|+..|+++.+... .+..++..+..++...|++++|...++.+++.. +.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~------------ 130 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PD------------ 130 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CC------------
Confidence 3455555555555555555555555554321 133344444445555555555555555554443 22
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHH---------------HHH
Q 007881 157 GKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDF-MISS---------------VLS 220 (586)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~ 220 (586)
+..+|..+...|...|++++|++.|+++.... |+.. .+.. .+.
T Consensus 131 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 131 -------------------NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTH
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 34445555555555555555555555555432 2211 1110 122
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHH
Q 007881 221 ACARIAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 296 (586)
.+...|++++|...+..+.+..+.. +..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 2225555666666665555544332 344555555555555555555555555432 233455555555555555555
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|+..|+++.+ .. +.+..++..+..+|.+.|++++|...|+.+.
T Consensus 270 A~~~~~~al~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 270 AVAAYRRALE--LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555554 11 1124455555555555555555555555544
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.1e-18 Score=169.32 Aligned_cols=251 Identities=11% Similarity=0.013 Sum_probs=110.6
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007881 158 KCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678888888888888554 4888999999999999999988854 25777888888888889999999987777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHH
Q 007881 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVT 317 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t 317 (586)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------hh
Confidence 7664 34577788899999999999998887753 77779999999999999999999999866 25
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007881 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYG 397 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 397 (586)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G 221 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCC
Confidence 788888999999999999988876 26788899999999999999997766655444443 446888889999
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc--CChHHHHHHHH
Q 007881 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT--GRWEEADLVRK 441 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 441 (586)
++++|..+++..+.+++...+.|..|+-+|++- |+..+..+.|.
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999888888888888888754 44555555443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=4.4e-17 Score=162.39 Aligned_cols=262 Identities=9% Similarity=-0.072 Sum_probs=209.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007881 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVD 255 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 255 (586)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+.++++..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45568888888999999999999999888754 346778888888889999999999999998887654 6778888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-----------CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 256 MYGKCGSIQDAEIAFNKMPE--R-----------NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~--~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
.|.+.|++++|.+.|+++.+ | ....+..+...+...|++++|++.|+++.+... -.++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHHHH
Confidence 99999999999999988753 1 123344567889999999999999999988311 112578899999
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
..+...|++++|+..|+.+.+. .+.+...|..+...|.+.|++++|++.|+++ ...| +..+|..+...+...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999764 2345789999999999999999999999987 3344 5788999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 401 LGRIAADNLFKLDPN------------DSGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
+|...+++++++.|. +...+..++.++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998766 367888999999999999988887654
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.8e-15 Score=158.72 Aligned_cols=398 Identities=10% Similarity=0.009 Sum_probs=288.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHH-
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISN- 85 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~- 85 (586)
|...|..++.. ...|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567778874 67899999999999999763 66778899999999999999999999998765 777778777753
Q ss_pred HHcCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------CCChHHHHHHHHHHHHhCCCCChhHHH
Q 007881 86 AVLGGRPKNAID----AFINLRR-TGGEPD-LITFCAFLNACSD---------CSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 86 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
....|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+|+.+++....+....|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 345678877765 7776654 355554 4455555554433 578999999999998732111123443
Q ss_pred HHHHHH-------------HhcCChHHHHHHHhc-------CC------CCC--------hhhHHHHHHHHHHc----CC
Q 007881 151 GLVDFY-------------GKCNEVGLAKVVFDG-------II------DKN--------DVSWCSMLVVYVQN----YE 192 (586)
Q Consensus 151 ~ll~~~-------------~~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~----g~ 192 (586)
...... .+.+++..|..++.. +. .|+ ...|...+.....+ ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 332211 123556777766654 11 122 24566655433332 23
Q ss_pred h----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-------ccCcH-------HHHHHHHHHHHhCCCCchhHHHHHH
Q 007881 193 E----ENGCQMFLTARREGVEPKDFMISSVLSACAR-------IAGLE-------LGRSVHAVAVKACVEGNIFVGSALV 254 (586)
Q Consensus 193 ~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li 254 (586)
. ++|+.+|++..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+...+..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47788999888752 3356677777766664 68887 8999999998732233688999999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CCe--eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHH-hhcc
Q 007881 255 DMYGKCGSIQDAEIAFNKMPE--RNL--VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSA-CSRA 328 (586)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a-~~~~ 328 (586)
..+.+.|++++|..+|+++.+ |+. ..|...+..+.+.|+.++|.++|++..+ . .|+ ...|...... +...
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--D--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--C--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--c--cCCchHHHHHHHHHHHHHc
Confidence 999999999999999998764 432 4799999999999999999999999987 2 233 3333322222 3368
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHH
Q 007881 329 GAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT--ISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 329 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a 402 (586)
|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998653 235788999999999999999999999997 33332 55898889888999999999
Q ss_pred HHHHHHHhccCCC
Q 007881 403 RIAADNLFKLDPN 415 (586)
Q Consensus 403 ~~~~~~~~~~~p~ 415 (586)
..+..++.+..|.
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999998874
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.3e-16 Score=148.91 Aligned_cols=267 Identities=10% Similarity=-0.020 Sum_probs=197.4
Q ss_pred HHhcCChHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHH
Q 007881 156 YGKCNEVGLAKVVFDGIIDKNDV----SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELG 231 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 231 (586)
....|++..|...++.....++. ....+..+|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 34567777777776665443322 334456677777777777765543 1245556666677777777777777
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q 007881 232 RSVHAVAVKACVEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCE 310 (586)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g 310 (586)
.+.++.++..+..| +...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+ .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~- 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--Q- 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h-
Confidence 77777777765433 556677778889999999999999998 56778899999999999999999999999988 3
Q ss_pred CCCCHHHH---HHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 007881 311 AVPNYVTL---VCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISV 385 (586)
Q Consensus 311 ~~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 385 (586)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3664321 12334444569999999999999875 3557889999999999999999999999997 4444 6778
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007881 386 WGALLNACRVYGKPEL-GRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
|..++..+...|+.++ +..+++++.+++|+++.+. +...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 5789999999999987654 33444455554443
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=2e-14 Score=156.88 Aligned_cols=378 Identities=10% Similarity=0.026 Sum_probs=289.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhC--CCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 007881 13 FPCLFKASSALHIPVTGKQLHALALKSG--QIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGG 90 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 90 (586)
-+...+++...|.+.++.++++.++-.+ +..+....+.|+....+. +..+...+.+....-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3667888889999999999999988432 113445667777777666 4455555555544322 444667788899
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007881 91 RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 91 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
.+++|+.+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|...|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999852 12222334433 567889998888754 357789999999999999999999997
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHH
Q 007881 171 GIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVG 250 (586)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (586)
+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 64 678889999999999999999999998777654 44434445888999998888644442 2 3455667
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC
Q 007881 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA 330 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~ 330 (586)
..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|...|+
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~--------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC--------CHHHHHHHHHHHhhhhH
Confidence 77999999999999999999985 589999999999999999999998762 45889999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--CCHHHHHHHH
Q 007881 331 VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY--GKPELGRIAA 406 (586)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--~~~~~a~~~~ 406 (586)
+..|......+ ..+...+..++..|.+.|.+++|+.+++.. +..| ....|+-|...+.+. ++..++.+.|
T Consensus 1266 f~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998876543 346677889999999999999999999876 5544 344566666666554 4556666777
Q ss_pred HHHhccCC-----CCchhHHHHHHHHhhcCChHHHHH
Q 007881 407 DNLFKLDP-----NDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 407 ~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
..-..+.| .+...|.-+.-.|.+.|+|+.|..
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66655555 567788899999999999999984
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.1e-16 Score=159.62 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHc
Q 007881 114 FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQN 190 (586)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 190 (586)
+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|++..+ .+..+|..+...|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 3333444444444444444444444432 22344444445555555555555555544321 2344555556666666
Q ss_pred CChHHHHHHHHHHHHCCCCCC-----------HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHH
Q 007881 191 YEEENGCQMFLTARREGVEPK-----------DFMISSVLSACARIAGLELGRSVHAVAVKACVEG-NIFVGSALVDMYG 258 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 258 (586)
|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+..+.+..+.. +..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 66666666666655421 21 1122233455556666666666666666654331 4555555666666
Q ss_pred hcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHH
Q 007881 259 KCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 334 (586)
+.|++++|.+.|++..+ .+..+|+.+...|...|++++|+..|+++.+ . .|+ ..++..+..+|...|++++|
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--I--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 66666666666655432 3345555666666666666666666666555 1 232 45555555556666666666
Q ss_pred HHHHHHhH
Q 007881 335 MKIFYSMT 342 (586)
Q Consensus 335 ~~~~~~~~ 342 (586)
...|+.+.
T Consensus 301 ~~~~~~al 308 (365)
T 4eqf_A 301 VSNFLTAL 308 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.2e-15 Score=154.46 Aligned_cols=362 Identities=13% Similarity=0.023 Sum_probs=182.5
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC------CC
Q 007881 78 TWNAYISNAVLGGRPKNAIDAFINLRRT-----G--GEP-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSG------FD 143 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~ 143 (586)
.||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...++++.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3444444444455555555554443220 0 111 12344455555555555555555555443321 00
Q ss_pred -CChhHHHHHHHHHHhc--CChHHHHHHHhcCCC--C-ChhhHHHHHHH---HHHcCChHHHHHHHHHHHHCCCCCCHhH
Q 007881 144 -GNVSVCNGLVDFYGKC--NEVGLAKVVFDGIID--K-NDVSWCSMLVV---YVQNYEEENGCQMFLTARREGVEPKDFM 214 (586)
Q Consensus 144 -~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t 214 (586)
....+++.+..++.+. +++++|...|++..+ | ++..+..+... +...++.++|++.|++..+.. +.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 1122333333333332 235555555554421 2 23333333322 223445555555555554432 122333
Q ss_pred HHHHHHHHhc----ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeHHHHHHHH
Q 007881 215 ISSVLSACAR----IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--R-NLVCWNAIIGG 287 (586)
Q Consensus 215 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 287 (586)
+..+...+.. .++.++|.+.+.......+. +..++..+...|.+.|++++|...|++..+ | +..+|..+...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3333333222 23455566666555555433 444555556666666666666666655442 2 23344444333
Q ss_pred HHh-------------------cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCC
Q 007881 288 YAH-------------------QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIK 348 (586)
Q Consensus 288 ~~~-------------------~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 348 (586)
|.. .+..++|...|++..+ .. +.+..++..+...+...|++++|+..|+..... .
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 321 2346778888888877 22 224567788889999999999999999988753 3
Q ss_pred CChH----HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007881 349 PGAE----HYACVVD-LLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 349 p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
|+.. .+..+.. .+...|+.++|+..|++. .+.|+...+... ...+..++++.++.+|+++.++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3322 2333332 245779999999999886 566665443332 334566778888899999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCccCCceee
Q 007881 423 LSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSW 456 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 456 (586)
|+.+|...|++++|.+.+++..+.|-..+...+|
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999998866443333343
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=5e-16 Score=151.78 Aligned_cols=258 Identities=7% Similarity=-0.076 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+..+. +..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHH
Confidence 34455555555666666666666555432 224445555555556666666666666666555432 4555566666666
Q ss_pred hcCCHHHHHHHHhhCCC--C-CeeHHHHH--------------HH-HHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007881 259 KCGSIQDAEIAFNKMPE--R-NLVCWNAI--------------IG-GYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
..|++++|.+.|+++.+ | +...+..+ .. .+...|++++|.+.++++.+ .. +.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MN-PNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HS-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hC-CCCHHHHHH
Confidence 66666666666665432 1 12222222 22 36778899999999999988 32 235788889
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998764 2335788999999999999999999999987 3333 57889999999999999
Q ss_pred HHHHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 399 PELGRIAADNLFKLDPN------------DSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+++|...++++.+..|. +...+..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988 6889999999999999999999998754
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=1.1e-13 Score=151.11 Aligned_cols=362 Identities=11% Similarity=0.023 Sum_probs=278.5
Q ss_pred HHHHHHHHhCC--CCChhhhHHHHHHHHhcCCchHHHHHhccCCC-CC-----cccHHHHHHHHHcCCChhHHHHHHHHH
Q 007881 31 QLHALALKSGQ--IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE-RN-----LATWNAYISNAVLGGRPKNAIDAFINL 102 (586)
Q Consensus 31 ~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 102 (586)
++.++.....+ ..++.--...+..|...|.+.+|+++++++.- |+ ...-|.|+.+..+. +..+..+..++.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 44444444332 22344456678888899999999999988752 22 24456677776666 556666666655
Q ss_pred HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH
Q 007881 103 RRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCS 182 (586)
Q Consensus 103 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 182 (586)
.. .....+...|...|.+++|.++|++.. ......+.++ -..+++++|.++.++.. +..+|..
T Consensus 1048 d~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsq 1110 (1630)
T 1xi4_A 1048 DN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQ 1110 (1630)
T ss_pred hh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHH
Confidence 32 123446677888999999999998852 1222223332 27889999999998774 4778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007881 183 MLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS 262 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (586)
+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+... +..+.+.++.+|++.++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcC
Confidence 999999999999999999553 4677888999999999999999999998887663 33344469999999999
Q ss_pred HHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 263 IQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 263 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
+++...+. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++..
T Consensus 1183 leele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1183 LAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 99655443 4567778888999999999999999999874 278899999999999999999998762
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007881 343 LKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 343 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
+..+|..+..+|...|++..|....... ..++..+..++..|...|.+++|+.+++..+.++|.+...|.-
T Consensus 1249 -------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1249 -------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred -------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 4688999999999999999999877654 3455667799999999999999999999999999999999988
Q ss_pred HHHHHhhc--CChHHHHHHHH
Q 007881 423 LSNMFAAT--GRWEEADLVRK 441 (586)
Q Consensus 423 l~~~~~~~--g~~~~a~~~~~ 441 (586)
|+.+|++. ++..++.++|.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 88888753 45556665555
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=175.21 Aligned_cols=150 Identities=7% Similarity=0.016 Sum_probs=127.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcC-------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH
Q 007881 143 DGNVSVCNGLVDFYGKCNEVGLAKVVFDGI-------IDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMI 215 (586)
Q Consensus 143 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 215 (586)
..-..+||+||++|+++|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334578999999999999999999999775 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHH
Q 007881 216 SSVLSACARIAGL-ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYA 289 (586)
Q Consensus 216 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~ 289 (586)
+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.- +.+.+.+.|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 78999999999999999999999999988887766666666555542 12334444555566
Q ss_pred hcC
Q 007881 290 HQG 292 (586)
Q Consensus 290 ~~g 292 (586)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=8.7e-18 Score=177.61 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=113.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH
Q 007881 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP-------ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY 315 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~ 315 (586)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+||+.|+.++|.++|++|.+ .|+.||.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~--~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD--AGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCcH
Confidence 33346789999999999999999999997753 48999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHhhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 316 VTLVCVLSACSRAGA-VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+||+++|.++++.|+ .++|.++|++|..+ |+.||..+|++++....+.+-++...++...+
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999999998 47899999999876 99999999999998887765555544443333
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=5.9e-15 Score=144.11 Aligned_cols=262 Identities=7% Similarity=-0.070 Sum_probs=188.5
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHH
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISN 85 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 85 (586)
+...+......+...|++++|..+++.+++.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44556777788889999999999999998875 55777888889999999999999999987653 356778888889
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 007881 86 AVLGGRPKNAIDAFINLRRTGGEPDLITFCAF--------------LN-ACSDCSLLQLGRQLHGFLVRSGFDGNVSVCN 150 (586)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (586)
+...|++++|+..|+++...... +...+..+ .. .+...|++++|...++.+++.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999998875322 22233222 11 2566677888888888887775 44667778
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccC
Q 007881 151 GLVDFYGKCNEVGLAKVVFDGII---DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG 227 (586)
Q Consensus 151 ~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 227 (586)
.+...|.+.|++++|...|++.. ..+..+|..+...|...|++++|+..|++..+.. +.+..++..+..++...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 88888888888888888887653 2345677777777778888888888887776643 2345566666677777777
Q ss_pred cHHHHHHHHHHHHhCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007881 228 LELGRSVHAVAVKACVEG-----------NIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
+++|...+..+.+..+.. +..++..+..+|.+.|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777776655442 45566666666666677776666666543
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.7e-14 Score=148.95 Aligned_cols=365 Identities=12% Similarity=-0.006 Sum_probs=233.1
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCC-----------C-CCcccHHHHHHHHHcCCChhHHHHHHHHHHHC-----
Q 007881 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMP-----------E-RNLATWNAYISNAVLGGRPKNAIDAFINLRRT----- 105 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 105 (586)
.....||.|...|...|++++|++.|++.. . ....+|+.+...|...|++++|...|++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678999999999999999998887642 1 23567888889999999999999999887542
Q ss_pred C-CCC-ChhhHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhcCChHHHHHHHhcCC---CC
Q 007881 106 G-GEP-DLITFCAFLNACS--DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDF---YGKCNEVGLAKVVFDGII---DK 175 (586)
Q Consensus 106 g-~~p-~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~---~~ 175 (586)
+ ..+ ...++.....++. ..+++++|.+.|+++++.. +.+...+..+..+ +...++.++|.+.|++.. ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 112 2344554444443 3457899999999998885 3345556555555 345677777888777653 23
Q ss_pred ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHH
Q 007881 176 NDVSWCSMLVVYVQ----NYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS 251 (586)
Q Consensus 176 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (586)
+...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45566665555544 467788999998887653 445667888888999999999999999999988765 566677
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHhhCC---CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q 007881 252 ALVDMYGKC-------------------GSIQDAEIAFNKMP---ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRC 309 (586)
Q Consensus 252 ~li~~~~~~-------------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 309 (586)
.+...|... +..+.|...|+... ..+..+|..+...|...|++++|++.|++..+ .
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~--~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS--K 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 676666432 23566777777654 35677899999999999999999999999988 3
Q ss_pred CCCCCH--HHHHHHHH-HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHH
Q 007881 310 EAVPNY--VTLVCVLS-ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTIS 384 (586)
Q Consensus 310 g~~pd~--~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~ 384 (586)
...|.. ..+..+.. ...+.|+.++|+..|.+..+ +.|+.......+ ..+.++++.. ... .+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHH
Confidence 322222 12223222 34578999999999998864 466654333222 2233333333 122 3567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007881 385 VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
+|..|...+...|++++|+..++++++++|.++.+...++
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 8999999999999999999999999999988776665443
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=4.5e-15 Score=142.41 Aligned_cols=246 Identities=11% Similarity=0.033 Sum_probs=200.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007881 184 LVVYVQNYEEENGCQMFLTARREGVEPKD--FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-.|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999998876543 34543 2445677899999999999876643 24567788899999999999
Q ss_pred CHHHHHHHHhhCC----CC-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 007881 262 SIQDAEIAFNKMP----ER-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMK 336 (586)
Q Consensus 262 ~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 336 (586)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|..
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999864 24 445667777889999999999999976 2567888899999999999999999
Q ss_pred HHHHhHHhcCCCCChHHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 337 IFYSMTLKYGIKPGAEHY---ACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 337 ~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
.|+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999865 4664322 23445555679999999999998 3335788999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCChHH-HHHHHHHHHhC
Q 007881 412 LDPNDSGNHVLLSNMFAATGRWEE-ADLVRKEMKDV 446 (586)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 446 (586)
.+|+++.++..++..+...|+.++ +.++++++.+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976 57899988764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.3e-14 Score=132.13 Aligned_cols=223 Identities=11% Similarity=-0.026 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+..+...
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------------ 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------------
Confidence 45555555666666666666666555544 4444444455555555555555555544443221100
Q ss_pred hcCCHHHHHHHHhhCCCCC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007881 259 KCGSIQDAEIAFNKMPERN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a 334 (586)
++ ..+|..+...|...|++++|+..|++..+ +.|+. ..+...|++++|
T Consensus 73 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -----------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT----EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCH-------HHHHHHHHHHHH
T ss_pred -----------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCchh-------HHHHHHhHHHHH
Confidence 01 35566666677777777777777777766 22443 234555677777
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 335 MKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 335 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
...++.+... .| +...+..+...+...|++++|.+.+++. ... .+..+|..+...+...|++++|...++++++
T Consensus 125 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777542 33 3566777777788888888888888776 222 3567788888888888899999999999888
Q ss_pred cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 412 LDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..|+++..+..++.+|...|++++|...+++..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888999999999999999988887653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.3e-14 Score=132.77 Aligned_cols=233 Identities=10% Similarity=-0.012 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----HhHHHH
Q 007881 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIID--KNDVSWCSMLVVYVQNYEEENGCQMFLTARREG--VEPK----DFMISS 217 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 217 (586)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999987622 678899999999999999999999999987642 1122 244555
Q ss_pred HHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHH
Q 007881 218 VLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 297 (586)
+..++...|++++|...+..+.+.... ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------------------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch----------------------------------------hHHHHHHhHHHHH
Confidence 555555666666666666555554322 1234445666666
Q ss_pred HHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007881 298 LSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
...++++.. . .|+ ...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 125 ~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 125 LKKAEAEAY--V--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHH--C--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--c--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666665 2 233 455666666777777777777777776643 123456677777777777777777777776
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCchhHHHHH
Q 007881 377 M-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD------PNDSGNHVLLS 424 (586)
Q Consensus 377 m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 424 (586)
. ...| +..+|..+...+...|++++|...++++.++. |.+...+..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 6 2223 46677778888888888888888888888877 66655554443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=5.5e-14 Score=128.69 Aligned_cols=193 Identities=15% Similarity=0.075 Sum_probs=152.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHH
Q 007881 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVC 320 (586)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ 320 (586)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+ ..|+ ...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHH
Confidence 4566777788888889999999999888654 4567888888889999999999999999887 2354 677888
Q ss_pred HHHHhhcc-----------CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 007881 321 VLSACSRA-----------GAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWG 387 (586)
Q Consensus 321 ll~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 387 (586)
+..++... |++++|+..|+...+. .|+ ...+..+...|...|++++|++.|++. ....+...|.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHH
Confidence 88888888 9999999999999754 554 778889999999999999999999987 2116888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
.+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999887653
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=6.7e-14 Score=132.97 Aligned_cols=241 Identities=10% Similarity=-0.089 Sum_probs=180.8
Q ss_pred HcCChHHHHHHHHHHHHCCCC--C-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007881 189 QNYEEENGCQMFLTARREGVE--P-KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQD 265 (586)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (586)
..|++++|+..|+++.+.... | +..++..+..++...|++++|...+..+++..+. +..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 346777888888887765321 1 3456667777778888888888888888877654 67788888888888899999
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
|.+.|++..+ .+..+|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9888888753 4577888889999999999999999999987 23655555555556677799999999998876
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 343 LKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT-----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 343 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
.. .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++.+.+|++
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 54 23343344 4677778888889999999886 33332 5778889999999999999999999999999987
Q ss_pred chhHHHHHHHHhhcCChHHHHHHH
Q 007881 417 SGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
...+ ..++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 5544 55677888888887765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.6e-13 Score=128.77 Aligned_cols=243 Identities=13% Similarity=-0.031 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHh
Q 007881 149 CNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPK--DFMISSVLSACA 223 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 223 (586)
+......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++....+-.|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455556666666666666665422 2334555666666666666666666666655221111 112444445555
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007881 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
..|++++|...+..+.+..+. +..++..+...|.+.|++++|.+.| ++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~-------------------------------~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYM-------------------------------EK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHH-------------------------------GG
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHH-------------------------------HH
Confidence 555555555555555554332 3344444444444445554444444 44
Q ss_pred hhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCC---hHHHHHHHHhC-
Q 007881 304 MTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGL---VDRAYEIIKEM- 377 (586)
Q Consensus 304 m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m- 377 (586)
..+ . .|+ ...+..+...+...+++++|...|+.+.+. .|+ ...+..+...+...|+ +++|...+++.
T Consensus 134 al~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 134 QIR--P--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GCC--S--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred Hhh--c--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 443 1 222 233333331222233555555555544432 222 3444444444444444 44444444443
Q ss_pred ---CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007881 378 ---PMRPT------ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 378 ---~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 11122 246777888888899999999999999999999988777766555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1e-12 Score=134.41 Aligned_cols=376 Identities=10% Similarity=0.018 Sum_probs=199.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCc---hHHHHHhccCCCCCcccHHHHHHHHHcCC--
Q 007881 16 LFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLK---DDADKMFDEMPERNLATWNAYISNAVLGG-- 90 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 90 (586)
+...+.+.|++++|.+++....+.| ++..+..|..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4455667789999999999998876 344555666777777877 89999998887767777777777555555
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---
Q 007881 91 ---RPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL---QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE--- 161 (586)
Q Consensus 91 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~--- 161 (586)
++++|+..|++..+.|.. ..+..+...|...+.. ..+.+.+......| +......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678899999888876533 2555555555544432 23444455554454 34456666677776663
Q ss_pred -hHHHHHHHhcCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHH
Q 007881 162 -VGLAKVVFDGIIDKNDVSWCSMLVVYVQNY---EEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 162 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
.+.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...+....
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~----------- 227 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT----------- 227 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG-----------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-----------
Confidence 344445555555555556666666666666 6666776666666655 233333233333333220
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHH-H--HhcCCHHHHHHHHHHhhhccCCCCCC
Q 007881 238 AVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGG-Y--AHQGHADMALSSFEEMTSMRCEAVPN 314 (586)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~g~~pd 314 (586)
...+++++|.+.|++....+..++..+... | ...|+.++|++.|++..+ .| +
T Consensus 228 --------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g---~ 282 (452)
T 3e4b_A 228 --------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--AD---Q 282 (452)
T ss_dssp --------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TT---C
T ss_pred --------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CC---C
Confidence 000344444444444332233344444433 2 235666677777766666 44 4
Q ss_pred HHHHHHHHHHhhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHH
Q 007881 315 YVTLVCVLSACSRAG-----AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR----AGLVDRAYEIIKEMPMRPTISV 385 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~ 385 (586)
...+..+...|. .| ++++|...|+... .-+...+..|..+|.. ..++++|.+.|++.-...+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 445555555554 34 6777777776653 2345555666666655 3377777777777622223344
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHH--hhcCChHHHHHHHHHHHh
Q 007881 386 WGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMF--AATGRWEEADLVRKEMKD 445 (586)
Q Consensus 386 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 445 (586)
...|...|.. ..+.++|...++++.+.+++.. ...+..+. ...++.++|.++.++-++
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4555555442 4578888888888887765433 23333332 233456677777666544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=2.6e-12 Score=120.30 Aligned_cols=166 Identities=13% Similarity=-0.006 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHh
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSAC 325 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~ 325 (586)
+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.+ .+..| +...+..+...+
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHH
Confidence 33334444444444444444443321 2333444455555555555555555555544 22233 234455555556
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 007881 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
...|++++|...|+.+.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHH
Confidence 66666666666666554321 223455555566666666666666666554 222 24445555555566666666666
Q ss_pred HHHHHHhccCCCCchh
Q 007881 404 IAADNLFKLDPNDSGN 419 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~ 419 (586)
..++++.+..|+++..
T Consensus 230 ~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 230 SYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHCCCCHHH
Confidence 6666666666665443
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.8e-12 Score=122.99 Aligned_cols=240 Identities=11% Similarity=-0.013 Sum_probs=155.8
Q ss_pred cCCChhHHHHHHHHHHHCCCC--C-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 007881 88 LGGRPKNAIDAFINLRRTGGE--P-DLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGL 164 (586)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 164 (586)
..|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888775321 1 34567777778888888888888888888775 4467788888888888888888
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 007881 165 AKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA 241 (586)
Q Consensus 165 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (586)
|...|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877633 35677888888888888888888888888774 355444444445556667777777777766665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC
Q 007881 242 CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN-------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN 314 (586)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd 314 (586)
... +...+. ++..+...++.++|.+.++...+.+ ..+|..+...|...|++++|...|++... . .|+
T Consensus 174 ~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~p~ 247 (275)
T 1xnf_A 174 SDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--N--NVH 247 (275)
T ss_dssp SCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T--CCT
T ss_pred CCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--C--Cch
Confidence 433 333333 5555666666666776666655421 34556666666666666666666666665 2 242
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHH
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~ 338 (586)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 111233444555555555443
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=2e-12 Score=118.21 Aligned_cols=194 Identities=12% Similarity=-0.038 Sum_probs=115.4
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007881 75 NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
+...|..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4556666667777777777777777777664322 45566666677777777777777777777764 345566667777
Q ss_pred HHHhc-----------CChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007881 155 FYGKC-----------NEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLS 220 (586)
Q Consensus 155 ~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 220 (586)
+|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77766 666666666665522 234556666666666666666666666666554 45555666666
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007881 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 273 (586)
++...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665543 4555556666666666666666665543
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4.1e-12 Score=120.37 Aligned_cols=228 Identities=10% Similarity=-0.031 Sum_probs=161.2
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh----hHHHHH
Q 007881 111 LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID--KNDV----SWCSML 184 (586)
Q Consensus 111 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 184 (586)
...+......+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667778889999999999999999875 44566899999999999999999999988754 3333 388999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCCH
Q 007881 185 VVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALV-DMYGKCGSI 263 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 263 (586)
..|...|++++|++.|++..+.. +.+...+..+...+...|++++|...+...++..+. +..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998853 335678888999999999999999999988877443 555666666 4444 3477
Q ss_pred HHHHHHHhhCCC--C-CeeHHHHHHHHHHhcCC---HHHHHHHHHHhhhccCCCCCCH------HHHHHHHHHhhccCCH
Q 007881 264 QDAEIAFNKMPE--R-NLVCWNAIIGGYAHQGH---ADMALSSFEEMTSMRCEAVPNY------VTLVCVLSACSRAGAV 331 (586)
Q Consensus 264 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~g~~pd~------~t~~~ll~a~~~~g~~ 331 (586)
++|.+.|++..+ | +...|..+...+...|+ .++|...|++..+.. .-.|+. .+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC-APGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 777776666543 2 34455555555665565 566666666665521 111221 3444555555555666
Q ss_pred HHHHHHHHHhHH
Q 007881 332 EKGMKIFYSMTL 343 (586)
Q Consensus 332 ~~a~~~~~~~~~ 343 (586)
++|...|+.+.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=2.2e-12 Score=127.94 Aligned_cols=243 Identities=8% Similarity=-0.044 Sum_probs=192.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccC-cHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007881 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAG-LELGRSVHAVAVKACVEGNIFVGSALVD 255 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 255 (586)
...|+.+...+.+.|++++|++.|++..... +-+...|..+..++...|+ +++|...+.++++..+. +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3467778888888888999999888888743 2245667777788888886 89999999888888766 7788888888
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhc-cCC
Q 007881 256 MYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSR-AGA 330 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~-~g~ 330 (586)
+|.+.|++++|...|+++.+ .+..+|..+..++...|++++|+..|+++++ . .| +...|+.+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--E--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHhcCc
Confidence 89999999999999988764 5678888899999999999999999999988 2 34 46788888888888 566
Q ss_pred HHHH-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC----
Q 007881 331 VEKG-----MKIFYSMTLKYGIKPG-AEHYACVVDLLGRAG--LVDRAYEIIKEMPMRP-TISVWGALLNACRVYG---- 397 (586)
Q Consensus 331 ~~~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~---- 397 (586)
.++| +..|+..++. .|+ ...|..+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4778877653 554 678888888888888 6899999888874444 4677888888887764
Q ss_pred -----CHHHHHHHHHHH-hccCCCCchhHHHHHHHHh
Q 007881 398 -----KPELGRIAADNL-FKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 398 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 428 (586)
..++|+.+++++ .+++|.....|..++..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999999 8999998888887776554
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=3.1e-12 Score=130.85 Aligned_cols=343 Identities=10% Similarity=-0.028 Sum_probs=178.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007881 82 YISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL---QLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK 158 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 158 (586)
+...+.+.|++++|+++|++..+.| +...+..+-..+...|+. ++|...++...+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445566777777777777776655 223333344444445555 6777777766643 34445555554444
Q ss_pred cC-----ChHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChHH---HHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007881 159 CN-----EVGLAKVVFDGIIDK-NDVSWCSMLVVYVQNYEEEN---GCQMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 159 ~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
.+ +.++|...|++..++ +...+..|...|...+..++ +.+.+......| +......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 44 566777777665433 34466666666666554333 344444444333 2334444455555555444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc----CCHHHHHH
Q 007881 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCG---SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ----GHADMALS 299 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~ 299 (586)
.+........+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44333333333222233346666777777777 67777777766543 2223335555555443 46777777
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHH-h--hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----ChHHHH
Q 007881 300 SFEEMTSMRCEAVPNYVTLVCVLSA-C--SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-----LVDRAY 371 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~ 371 (586)
.|++.. . -+...+..+... + ...+++++|...|+...+. | +...+..|..+|. .| ++++|.
T Consensus 239 ~~~~aa-~-----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 239 LLEKIA-P-----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHG-G-----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHc-C-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 777654 1 133444444444 2 4467777777777776542 3 4555666666665 44 777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHH
Q 007881 372 EIIKEMPMRPTISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA----TGRWEEADLVRKEM 443 (586)
Q Consensus 372 ~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 443 (586)
+.|++.- ..+...+..|...|.. ..+.++|...++++.+.+ ++.....|+.+|.. ..+.++|...++..
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 7777766 5456666666655544 236777777777766643 34566666666654 34677777777777
Q ss_pred HhCCC
Q 007881 444 KDVGI 448 (586)
Q Consensus 444 ~~~g~ 448 (586)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 66654
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=1.9e-12 Score=121.17 Aligned_cols=197 Identities=11% Similarity=-0.027 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~ 323 (586)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|.+.|+++.+ .. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HC-cCcHHHHHHHHH
Confidence 45677788888888999999888887653 4667888999999999999999999999988 32 235778888999
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007881 324 ACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
.+...|++++|..+|+.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999875 23455 4678889999999999999999999987 3333 5788999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+|...++++.+..|++...+..++.+|...|++++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999998743
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=3e-12 Score=117.30 Aligned_cols=196 Identities=12% Similarity=-0.008 Sum_probs=136.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.+ .. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hC-CCChHHHHHHH
Confidence 345556666666777777777777666542 3455667777777777777777777777766 21 22456677777
Q ss_pred HHhhcc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007881 323 SACSRA-GAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 323 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
..+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 777777 777777777777765 223333 566677777777788888887777776 2223 46677777777888888
Q ss_pred HHHHHHHHHHHhccCC-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 399 PELGRIAADNLFKLDP-NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+++|...++++.+..| ++...+..++..+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888888877 7777777777777788888888888877764
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1e-11 Score=117.83 Aligned_cols=225 Identities=9% Similarity=-0.085 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----ccCcHHHHHHHHHHHHhCCCCchhHHH
Q 007881 176 NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR----IAGLELGRSVHAVAVKACVEGNIFVGS 251 (586)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (586)
++.++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555666666666666666665552 233444444455555 555556655555555543 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHHHHHHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 252 ALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAIIGGYAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 252 ~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
.+...|.. .|++++|.+.|++..+ .+..++..+...|.. .|++++|+..|++..+ .+ +...+..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh--cC---cHHHHHHHH
Confidence 55555555 5555555555554332 233444555555555 5555555555555555 22 333444444
Q ss_pred HHhhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007881 323 SACSR----AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGR----AGLVDRAYEIIKEMPMRPTISVWGALLNACR 394 (586)
Q Consensus 323 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 394 (586)
..|.. .+++++|...|+...+. .+...+..+...|.. .+++++|++.|++.-...+...+..+...+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44444 55555555555555432 123344444444444 4555555555544311112334444444444
Q ss_pred H----cCCHHHHHHHHHHHhccCCC
Q 007881 395 V----YGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 395 ~----~~~~~~a~~~~~~~~~~~p~ 415 (586)
. .+++++|...++++.+.+|+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 4 44555555555555544443
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=5.9e-12 Score=115.29 Aligned_cols=207 Identities=9% Similarity=-0.008 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007881 177 DVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDM 256 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (586)
...|..+...+...|++++|++.|++..+. .+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~-~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DPK-NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------Ccc-chHHHHHHHHH
Confidence 345555556666666666666666655543 221 23344444555
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc-CCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCH
Q 007881 257 YGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ-GHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAV 331 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~ 331 (586)
|...|++++|.+.|++..+ .+..+|..+...|... |++++|...|+++.+ .+..|+ ...+..+..++...|++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCH
Confidence 5555555555555554432 2344566666667777 777777777777765 322333 45666777777777788
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007881 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR--PTISVWGALLNACRVYGKPELGRIAADN 408 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 408 (586)
++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.|...++.
T Consensus 130 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 8887777777653 1223667777777888888888888888776 222 3556666677777888888888888888
Q ss_pred HhccCCCCchhHHHH
Q 007881 409 LFKLDPNDSGNHVLL 423 (586)
Q Consensus 409 ~~~~~p~~~~~~~~l 423 (586)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 888888877665443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=5.9e-13 Score=123.80 Aligned_cols=172 Identities=9% Similarity=-0.005 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh
Q 007881 249 VGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC 325 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~ 325 (586)
.+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|.+.|+++.+ .. +.+...+..+...+
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHH
Confidence 333344444444444444444443321 2334444555555555555555555555554 11 12344555555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 007881 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 6666666666666655432 1223455555556666666666666666554 111 23555666666666666666666
Q ss_pred HHHHHHhccCCCCchhHHHHHH
Q 007881 404 IAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
..++++.+..|+++..+..+..
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHccCcchHHHHHHHHH
Confidence 6666666666666555544433
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.6e-11 Score=116.64 Aligned_cols=224 Identities=9% Similarity=-0.050 Sum_probs=194.1
Q ss_pred CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CCeeHHHHHH
Q 007881 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGK----CGSIQDAEIAFNKMPE-RNLVCWNAII 285 (586)
Q Consensus 211 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 285 (586)
+..++..+...+...|++++|...+....+.+ +...+..+...|.. .|++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45567777788889999999999999999843 56778889999999 9999999999998754 4778888899
Q ss_pred HHHHh----cCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007881 286 GGYAH----QGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 286 ~~~~~----~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
..|.. .+++++|+..|++..+ .+ +...+..+...|.. .+++++|+..|+...+. + +...+..+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACD--LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHH--cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 99999 9999999999999998 44 67888888889998 99999999999999764 3 56778888
Q ss_pred HHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 007881 358 VDLLGR----AGLVDRAYEIIKEMPMRPTISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA 429 (586)
Q Consensus 358 i~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (586)
...|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 888988 99999999999987222467888889999999 9999999999999999876 6788899999999
Q ss_pred ----cCChHHHHHHHHHHHhCCC
Q 007881 430 ----TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 430 ----~g~~~~a~~~~~~m~~~g~ 448 (586)
.+++++|.+.+++..+.|.
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988663
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=9.9e-13 Score=122.25 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=155.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007881 245 GNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ .. +.+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LD-SSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CcchHHHHHH
Confidence 3456677788888999999999999988754 4667888899999999999999999999988 32 2357888889
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKP 399 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~ 399 (586)
...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999764 2346778899999999999999999999987 323 3678899999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999874
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2.3e-12 Score=129.73 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=153.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhcccCcHHHHHHHHHHHHh----CCC-CchhHHHH
Q 007881 182 SMLVVYVQNYEEENGCQMFLTARREGVEPK----DFMISSVLSACARIAGLELGRSVHAVAVKA----CVE-GNIFVGSA 252 (586)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 252 (586)
.....+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+.++... +.. ....++..
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33344444444444444444444331 111 123333444444444444444444443321 101 11334455
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 007881 253 LVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGH--------------------ADMALSSFEE 303 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 303 (586)
+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 55556666666666665555432 11 2355566666666666 6777776666
Q ss_pred hhhcc--CCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHh
Q 007881 304 MTSMR--CEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 304 m~~~~--~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
..... .+-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 54310 111111 345667777788888888888888776643211222 33677777888888888888888877
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 377 M----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 377 m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11112 4567777788888888888888888888764322 45777888888899999999988888
Q ss_pred HHh
Q 007881 443 MKD 445 (586)
Q Consensus 443 m~~ 445 (586)
..+
T Consensus 333 al~ 335 (406)
T 3sf4_A 333 HLE 335 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=8.5e-13 Score=133.45 Aligned_cols=198 Identities=11% Similarity=-0.021 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCeeHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 007881 248 FVGSALVDMYGKCGSIQDAEIAFNKMPE---------RNLVCWNAIIGGYAHQGH-----------------ADMALSSF 301 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 301 (586)
.++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444555555555665555555554332 112355556666666666 66666666
Q ss_pred HHhhhcc--CCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHH
Q 007881 302 EEMTSMR--CEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 302 ~~m~~~~--~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
++..+.. .+-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 6654310 01111 1346667777788888888888888776543211112 236777788888888888888888
Q ss_pred HhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CchhHHHHHHHHhhcCChHHHHHHH
Q 007881 375 KEM-PM---RP----TISVWGALLNACRVYGKPELGRIAADNLFKLDPN------DSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 375 ~~m-~~---~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
++. .. .. ...++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 775 11 11 1456777888888899999999999888876432 2347788899999999999999999
Q ss_pred HHHHh
Q 007881 441 KEMKD 445 (586)
Q Consensus 441 ~~m~~ 445 (586)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.2e-12 Score=125.94 Aligned_cols=262 Identities=12% Similarity=0.037 Sum_probs=170.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHhcccCcHHHHHHHHHHHHh----CCC-CchhHHHH
Q 007881 183 MLVVYVQNYEEENGCQMFLTARREGVEPK-----DFMISSVLSACARIAGLELGRSVHAVAVKA----CVE-GNIFVGSA 252 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 252 (586)
....+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+....+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555566666666665555532 22 134445555555566666666665554432 111 12445566
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 007881 253 LVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGH--------------------ADMALSSFEE 303 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 303 (586)
+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66677777777777777666432 11 2366667777777777 7777777776
Q ss_pred hhhcc--CCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHh
Q 007881 304 MTSMR--CEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 304 m~~~~--~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
..... .+-.| ...++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64410 11111 1346777778888889999999888877643211122 33677888888999999999988887
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 377 M----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 377 m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
. +..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 4567778888999999999999999988864322 34777899999999999999999999
Q ss_pred HHhC
Q 007881 443 MKDV 446 (586)
Q Consensus 443 m~~~ 446 (586)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=7.2e-12 Score=124.28 Aligned_cols=224 Identities=12% Similarity=0.032 Sum_probs=191.9
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CCeeHHHHHHHHH
Q 007881 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGS-IQDAEIAFNKMPE---RNLVCWNAIIGGY 288 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~~~ 288 (586)
..|..+..++...|++++|...+..+++..+. +..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 35666777788899999999999999998866 78889999999999997 9999999999864 5678999999999
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHh-cC
Q 007881 289 AHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGR-AG 365 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g 365 (586)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+.+++. .| +...|+.+..+|.+ .|
T Consensus 177 ~~~g~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHccCHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999982 35 5788999999999999999999999999864 45 47889999999999 66
Q ss_pred ChHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-----
Q 007881 366 LVDRA-----YEIIKEM-PMRP-TISVWGALLNACRVYG--KPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG----- 431 (586)
Q Consensus 366 ~~~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----- 431 (586)
..++| ++.+++. .+.| +...|..+...+...| ++++|+..+.++ +.+|+++..+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 65777 4777776 4445 5778999998888888 689999999998 889999999999999999874
Q ss_pred ----ChHHHHHHHHHH-Hh
Q 007881 432 ----RWEEADLVRKEM-KD 445 (586)
Q Consensus 432 ----~~~~a~~~~~~m-~~ 445 (586)
..++|.++++++ .+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE 347 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=5.3e-12 Score=127.08 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----h
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----A 351 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 351 (586)
+|..+...|...|++++|...+++..+.... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3444445555555555555555554431000 011 225555666666666666666666655432111111 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCc
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLD------PNDS 417 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~ 417 (586)
.++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++.++. +...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 45666666777777777777766664 11112 4566777777888888888888888877753 2235
Q ss_pred hhHHHHHHHHhhcCChH
Q 007881 418 GNHVLLSNMFAATGRWE 434 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~ 434 (586)
.++..++.+|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56778888888888764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=9.8e-13 Score=135.41 Aligned_cols=191 Identities=9% Similarity=-0.003 Sum_probs=154.3
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSI-QDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCV 321 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~l 321 (586)
+...+..+...|...|++ ++|.+.|++..+ .+..+|..+...|...|++++|++.|++..+ +.|+...+..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT----HCKNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCHHHHHHH
Confidence 555666666666667777 777777666542 3456777888888888888888888888877 34777788888
Q ss_pred HHHhhcc---------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC-
Q 007881 322 LSACSRA---------GAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRA--------GLVDRAYEIIKEM-PMRP- 381 (586)
Q Consensus 322 l~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p- 381 (586)
...+... |++++|+..|++..+. .| +...|..+..+|... |++++|++.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 8888888 8899999999888754 34 477888888888888 8899999999887 4445
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 382 ---TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 382 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+...|..+..++...|++++|...++++.+++|+++..+..++.++...|++++|.+.+.++
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999999999999999999999999999999999999999998765443
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.7e-11 Score=108.74 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=133.3
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007881 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
+...|..+...|.+.|++++|++.|++..+ . .| +..++..+..++.+.|++++|...+...... .+.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--A--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHH
Confidence 456777888888888888888888888877 2 34 4667788888888888888888888888653 233456677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.+...+...+++++|.+.+.+. ...| +...+..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 7778888888898888888876 2233 5678888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 007881 434 EEADLVRKEMKDV 446 (586)
Q Consensus 434 ~~a~~~~~~m~~~ 446 (586)
++|.+.+++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988764
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=7.4e-12 Score=126.52 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC----Ch
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP----GA 351 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 351 (586)
+|..+...|...|++++|+..|++..+.... .++ ..++..+...+...|++++|...|+.......-.. ..
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4444555555555555555555555441000 011 12555666666666777777666666543211111 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
..+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++.++.+
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 56666777777777777777777665 11 111 34677778888888999999999998888765
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=9.6e-12 Score=121.36 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=50.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT----IS 384 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~ 384 (586)
++..+...+...|++++|...++.......-.++ ...+..+...|...|++++|.+.+++. .. .++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444444455555555555555444322110111 334455555566666666665555554 10 011 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007881 385 VWGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566666777777777777777777776654
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=2.5e-09 Score=113.26 Aligned_cols=200 Identities=7% Similarity=-0.042 Sum_probs=89.4
Q ss_pred HhHHHHHHHHHhcccCcHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC
Q 007881 212 DFMISSVLSACARIAGLELGR-SVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-------------RN 277 (586)
Q Consensus 212 ~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~ 277 (586)
...|.....-+...|+.+.|. .+++..+...+ .+...+-.++...-+.|+++.|.++|+++.+ |+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 333444444444445555553 55555554332 2344444455555555555555555554432 11
Q ss_pred ------------eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc-cCCHHHHHHHHHHhHHh
Q 007881 278 ------------LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSR-AGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 278 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~ 344 (586)
...|...+....+.|..+.|..+|.+..+ ..-.+....|......-.+ .++.+.|..+|+...+.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~--~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR--LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11344444444445555555555555544 2000111122111111111 23355555555555543
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 345 YGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP----TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
+ +-+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|++
T Consensus 500 ~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 F--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp H--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred C--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2 222334445555555555555555555554 1112 12345555555555555555555555555555544
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=1.8e-11 Score=122.45 Aligned_cols=196 Identities=12% Similarity=0.034 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC---
Q 007881 248 FVGSALVDMYGKCGSIQDAEIAFNKMPE-----RN-----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN--- 314 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd--- 314 (586)
.++..+...|...|++++|...+++..+ ++ ..+++.+...|...|++++|++.|++..+..... ++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 222 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE-KQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc-CChHH
Confidence 3444555555555555555555544331 11 2355566666667777777777766665411100 11
Q ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC---
Q 007881 315 -YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT--- 382 (586)
Q Consensus 315 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~--- 382 (586)
..++..+...|...|++++|...|++..+-. +..| ...++..+...|.+.|++++|.+.+++. .. .++
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2356667777777777777777777665411 1212 2456677777777777777777777765 11 012
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 383 ISVWGALLNACRVYGK---PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
...+..+...+...|+ .++|+..+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1224455555666676 66666666665 22233445677788888888888888888888765
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=1.8e-09 Score=114.25 Aligned_cols=416 Identities=8% Similarity=-0.014 Sum_probs=280.0
Q ss_pred HHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--C-CcccHHHHHHHHHcCCC---hhHHHHHHHH
Q 007881 28 TGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--R-NLATWNAYISNAVLGGR---PKNAIDAFIN 101 (586)
Q Consensus 28 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~ 101 (586)
.-...++..++.+ +.|...|..++..+.+.+.++.|..+|+.+.. | ....|..-+..-.+.|+ ++.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444566666665 67899999999999999999999999998865 3 45568888888888888 9999999999
Q ss_pred HHHCC-CCCChhhHHHHHHHHhcCCCh--------HHHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHHh---------cC
Q 007881 102 LRRTG-GEPDLITFCAFLNACSDCSLL--------QLGRQLHGFLVRS-GF-DGN-VSVCNGLVDFYGK---------CN 160 (586)
Q Consensus 102 m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~ll~~~~~---------~g 160 (586)
..... ..|+...|..-+.-..+.++. +...++|+.++.. |. .++ ...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98754 137777776666544433332 3455788877654 66 554 4678877776542 34
Q ss_pred ChHHHHHHHhcCCC-C--C-hhhHH---HHHHHH----------HHcCChHHHHHHHHHHHH--CCCC------------
Q 007881 161 EVGLAKVVFDGIID-K--N-DVSWC---SMLVVY----------VQNYEEENGCQMFLTARR--EGVE------------ 209 (586)
Q Consensus 161 ~~~~A~~~~~~~~~-~--~-~~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~g~~------------ 209 (586)
+++.+.++|++... | + ...|. .+...+ -...+++.|...+.++.. .++.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 57788999988754 2 1 12232 221111 001223445555554432 1111
Q ss_pred ---C--C---H---hHHHHHHHHHhccc-------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHH
Q 007881 210 ---P--K---D---FMISSVLSACARIA-------GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE-IAF 270 (586)
Q Consensus 210 ---p--~---~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~ 270 (586)
| + . ..|...+.---..+ ..+.+..+|++.+...+. +..+|-..+..+...|+.++|. ++|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 0 12222222211111 123345678888776544 6778888888888899999996 999
Q ss_pred hhCCC--C-CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--------CCCCCC------------HHHHHHHHHHhhc
Q 007881 271 NKMPE--R-NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR--------CEAVPN------------YVTLVCVLSACSR 327 (586)
Q Consensus 271 ~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~g~~pd------------~~t~~~ll~a~~~ 327 (586)
++... | +...|-..+...-+.|++++|.++|+++.... .. .|+ ...|...+....+
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED-DPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc-cCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 88653 3 45567788888889999999999999998620 00 132 2357777777788
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007881 328 AGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-LVDRAYEIIKEM--PMRPTISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
.|..+.|+.+|..+.+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+.-....|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 899999999999997641 1223445544444444554 589999999987 222356677888888888999999999
Q ss_pred HHHHHhccCCC---CchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 405 AADNLFKLDPN---DSGNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 405 ~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
+|++++...|+ ....+...+..-.+.|+.+.+.++.+++.+.-
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998873 44567777777788999999999999998754
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=6.5e-10 Score=107.45 Aligned_cols=217 Identities=9% Similarity=-0.002 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-------cccCc-------HHHHHHHHHHHHh-CCCCchhHHHHHHHHHH
Q 007881 194 ENGCQMFLTARREGVEPKDFMISSVLSACA-------RIAGL-------ELGRSVHAVAVKA-CVEGNIFVGSALVDMYG 258 (586)
Q Consensus 194 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 258 (586)
++|+..|++..... +-+...|......+. +.|+. ++|..++++.++. .+. +...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45666666666532 234444555444443 24664 7777777777763 332 5567777777777
Q ss_pred hcCCHHHHHHHHhhCCC--CC-ee-HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh-hccCCHHH
Q 007881 259 KCGSIQDAEIAFNKMPE--RN-LV-CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC-SRAGAVEK 333 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~--~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~-~~~g~~~~ 333 (586)
+.|++++|.++|++..+ |+ .. .|..+...+.+.|++++|..+|++..+ .. +++...|....... ...|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--ST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 78888888888877654 32 32 677777777778888888888888776 22 12333443332222 13578888
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007881 334 GMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P---MRP--TISVWGALLNACRVYGKPELGRIAAD 407 (586)
Q Consensus 334 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 407 (586)
|..+|+...+.. +-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++
T Consensus 188 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888776542 224667777777778888888888888776 2 244 35677777777777888888888888
Q ss_pred HHhccCCCCc
Q 007881 408 NLFKLDPNDS 417 (586)
Q Consensus 408 ~~~~~~p~~~ 417 (586)
++.+..|++.
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 8888777644
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=122.69 Aligned_cols=242 Identities=13% Similarity=0.048 Sum_probs=122.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHh------CC
Q 007881 177 DVSWCSMLVVYVQNYEEENGCQMFLTARRE-------GVEPKDFMISSVLSACARIAGLELGRSVHAVAVKA------CV 243 (586)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 243 (586)
..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888889999998888887662 11223345556666667777777777777666553 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHH
Q 007881 244 -EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCV 321 (586)
Q Consensus 244 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~l 321 (586)
.....++..+...|...|++++|...|++..+ ++++... +-.| ....+..+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~---~~~~~~~~~~~~l 159 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG---KDHPDVAKQLNNL 159 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC---TTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC---CCChHHHHHHHHH
Confidence 11234455555556666666666555554321 0000000 0011 12334444
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-C---------CCC----
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKY-----GIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-P---------MRP---- 381 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p---- 381 (586)
...+...|++++|..+|+.+.... +..| ....+..+...|.+.|++++|.+.++++ . ..+
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 444445555555555554443210 0011 1234444555555555555555555443 0 001
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 382 ---TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
....+..+...+...+.+.++...++......|....++..++.+|...|++++|.+++++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222233344455566666667777767777777888888888888888888888887654
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=4.6e-11 Score=127.99 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=131.0
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYA 355 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 355 (586)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ..++..+..+|.+.|++++|+..|++..+. .|+ ...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 45677778888888888888888888877 3354 677888888888888888888888887643 554 67788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|+|
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 8888888888888888888876 4444 4678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007881 434 EEADLVRKEMKD 445 (586)
Q Consensus 434 ~~a~~~~~~m~~ 445 (586)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=2.1e-10 Score=110.96 Aligned_cols=212 Identities=9% Similarity=-0.001 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-CeeHHHHHHHHHHh
Q 007881 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYG-------KCGSI-------QDAEIAFNKMPE---R-NLVCWNAIIGGYAH 290 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~ 290 (586)
+.|..+|+++++..+. +...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6777888888887654 6778887877775 35885 899999998653 3 45689999999999
Q ss_pred cCCHHHHHHHHHHhhhccCCCCCCH-H-HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-hcCCh
Q 007881 291 QGHADMALSSFEEMTSMRCEAVPNY-V-TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLG-RAGLV 367 (586)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~g~~pd~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~ 367 (586)
.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|+...+. .+++...|........ ..|++
T Consensus 112 ~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999988 44653 3 7889999999999999999999999753 1334555554444432 36999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CchhHHHHHHHHhhcCChHHHHHHHH
Q 007881 368 DRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKL---DPN-DSGNHVLLSNMFAATGRWEEADLVRK 441 (586)
Q Consensus 368 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 441 (586)
++|.++|++. ... .+...|..++..+...|++++|..+|+++++. .|+ ....+..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999987 222 36788999999999999999999999999996 443 56688888999999999999999999
Q ss_pred HHHhCC
Q 007881 442 EMKDVG 447 (586)
Q Consensus 442 ~m~~~g 447 (586)
++.+..
T Consensus 266 ~a~~~~ 271 (308)
T 2ond_A 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 998743
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=7.5e-11 Score=104.46 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=135.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVL 322 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll 322 (586)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+... .. +-+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-chhHHHHHHHH
Confidence 566788888888888888888888888653 4567788888888999999999999988877 22 22456677777
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPE 400 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 400 (586)
..+...++++.|...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999888753 2334677888889999999999999999887 3334 5778999999999999999
Q ss_pred HHHHHHHHHhccCCCCc
Q 007881 401 LGRIAADNLFKLDPNDS 417 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~ 417 (586)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999998753
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=2e-09 Score=107.06 Aligned_cols=261 Identities=13% Similarity=0.032 Sum_probs=166.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC-c----hhHHHHHHH
Q 007881 185 VVYVQNYEEENGCQMFLTARREGVEPKDF----MISSVLSACARIAGLELGRSVHAVAVKACVEG-N----IFVGSALVD 255 (586)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~ 255 (586)
..+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+.+..+..... + ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666666666666655532111211 23344455556677777776666655432111 1 223455667
Q ss_pred HHHhcCCHHHHHHHHhhCCC-------C----CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC--CHHHHHHHH
Q 007881 256 MYGKCGSIQDAEIAFNKMPE-------R----NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP--NYVTLVCVL 322 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p--d~~t~~~ll 322 (586)
.|...|++++|...+++..+ + ....+..+...+...|++++|...+++.........| ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 77778888888777766532 1 1234555677788888888888888887662121112 134567777
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA-----CVVDLLGRAGLVDRAYEIIKEM-PMRPT-----ISVWGALLN 391 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~ 391 (586)
..+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 888888999999999888764321111111121 2334577899999999999887 22221 335667778
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC-----C-chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 392 ACRVYGKPELGRIAADNLFKLDPN-----D-SGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+...|++++|...++++.+..+. + ...+..++.++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999988775322 1 13667788889999999999999998765
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.3e-10 Score=116.31 Aligned_cols=231 Identities=8% Similarity=-0.035 Sum_probs=161.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCC------chhHHH
Q 007881 183 MLVVYVQNYEEENGCQMFLTARREG-VEPK----DFMISSVLSACARIAGLELGRSVHAVAVKACVEG------NIFVGS 251 (586)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 251 (586)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+.+..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445566677777777777665421 0122 2355566666677777777777776666532111 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCCC-HHHHH
Q 007881 252 ALVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVPN-YVTLV 319 (586)
Q Consensus 252 ~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~pd-~~t~~ 319 (586)
.+...|...|++++|.+.|++..+ ++ ..+|+.+...|...|++++|++.|++..+.. .+..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888877653 11 1377888888999999999999998877610 122233 56788
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007881 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPG---AEHYACVVDLLGRAGL---VDRAYEIIKEMPMRPT-ISVWGALLNA 392 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 392 (586)
.+...+.+.|++++|...++.......-.++ ...+..+...|...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8899999999999999999887643211112 3345678888888998 8999999999865544 3466778888
Q ss_pred HHHcCCHHHHHHHHHHHhccC
Q 007881 393 CRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~ 413 (586)
|...|++++|...++++.++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=2.8e-10 Score=100.38 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLL 361 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 361 (586)
..+...+...|++++|...|+++.+ .. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYD--AD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCC--TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 3334444444555555555544443 11 123444444555555555555555555555432 122344555555555
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 007881 362 GRAGLVDRAYEIIKEM-P-MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 362 ~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 439 (586)
...|++++|.+.++++ . .+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666554 1 1234566677777777778888888888888888887777888888888888888888888
Q ss_pred HHHHHhC
Q 007881 440 RKEMKDV 446 (586)
Q Consensus 440 ~~~m~~~ 446 (586)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8877653
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=119.32 Aligned_cols=244 Identities=11% Similarity=0.067 Sum_probs=148.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 007881 145 NVSVCNGLVDFYGKCNEVGLAKVVFDGIID--------K---NDVSWCSMLVVYVQNYEEENGCQMFLTARRE------G 207 (586)
Q Consensus 145 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 207 (586)
+..++..+...|...|++++|..+|++..+ . ....+..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467789999999999999999999988744 2 2456888999999999999999999998764 2
Q ss_pred CCC-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC------CCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Q 007881 208 VEP-KDFMISSVLSACARIAGLELGRSVHAVAVKAC------VEG-NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLV 279 (586)
Q Consensus 208 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 279 (586)
-.| ...++..+...+...|++++|...+..+.+.. ..| ...++..+...|...|++++|.+.|++..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---- 181 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE---- 181 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 223 34567788889999999999999998887642 111 233455555556666666666555544321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc------CCCCC--
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY------GIKPG-- 350 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-- 350 (586)
+++.... +-.|+ ..++..+...+...|++++|...|+.+.+.. ...+.
T Consensus 182 --------------------~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 182 --------------------IYQTKLG---PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp --------------------HHHHTSC---TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred --------------------HHHHHhC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 0110000 00121 2344555555555566666655555554310 01111
Q ss_pred -----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 351 -----AEHYACVVDLLGRAGLVDRAYEIIKEMP-MRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 351 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
...+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1222233334445556666666666652 223 4567888888999999999999999999887664
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=3.1e-10 Score=116.71 Aligned_cols=207 Identities=10% Similarity=-0.044 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 007881 193 EENGCQMFLTARREGVEPKDFMISSVLSACARIAGL-ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFN 271 (586)
Q Consensus 193 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 271 (586)
+++++..+.+..... +.+...+..+..++...|++ ++|...+.++++..+. +...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666555432 33566677777788888888 8888888888877654 57788888888888888888888888
Q ss_pred hCCC--CCeeHHHHHHHHHHhc---------CCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhcc--------CCH
Q 007881 272 KMPE--RNLVCWNAIIGGYAHQ---------GHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRA--------GAV 331 (586)
Q Consensus 272 ~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~--------g~~ 331 (586)
+..+ |+...|..+...|... |++++|++.|++..+ . .| +...+..+..+|... |++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--M--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8654 6667777888888888 889999999998887 2 24 467788888888888 889
Q ss_pred HHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007881 332 EKGMKIFYSMTLKYGIKP----GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIA 405 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 405 (586)
++|+..|+...+. .| +...|..+..+|.+.|++++|.+.|++. ...| +...|..+...+...|++++|...
T Consensus 238 ~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888753 45 5788888889999999999999999887 3334 456778888888888888877765
Q ss_pred HHH
Q 007881 406 ADN 408 (586)
Q Consensus 406 ~~~ 408 (586)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=5.7e-10 Score=98.34 Aligned_cols=168 Identities=12% Similarity=-0.008 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLS 323 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~ 323 (586)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...+...|++++|...++++.+ .. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHH
Confidence 44567788889999999999999999875 4567888899999999999999999999988 32 235778888999
Q ss_pred HhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 007881 324 ACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~ 401 (586)
.+...|++++|...++.+... .+.+...+..+...+...|++++|.+.++++ .. ..+..++..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999764 2446788889999999999999999999987 22 2367889999999999999999
Q ss_pred HHHHHHHHhccCCCCchh
Q 007881 402 GRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~ 419 (586)
|...++++.+..|++...
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999998876543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=3.6e-10 Score=112.82 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCC-CH
Q 007881 249 VGSALVDMYGKCGSIQDAEIAFNKMPE-----RN-----LVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVP-NY 315 (586)
Q Consensus 249 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~p-d~ 315 (586)
++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|++.|++..+.. .+-.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 444455555555555555555444321 11 2345556666666666666666666655411 11011 12
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM----PM--RPT-ISV 385 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~ 385 (586)
.++..+...|...|++++|...|++...-. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666667777777777777777665411 11222456666777777777777777777665 11 122 223
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 386 WGALLNACRVYGK---PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 386 ~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..+...+...++ +++|+..+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444555556 56666666552 11233344566788888888888888888877654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=8.2e-10 Score=101.48 Aligned_cols=204 Identities=9% Similarity=0.043 Sum_probs=150.6
Q ss_pred CCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHH
Q 007881 210 PKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIG 286 (586)
Q Consensus 210 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 286 (586)
.|+..+......+...|++++|...+...++..+.++...+..+...|.+.|++++|.+.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356677778888889999999999999999888756777777788899999999999999988653 34567888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCCC-H-------HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC---hHHHH
Q 007881 287 GYAHQGHADMALSSFEEMTSMRCEAVPN-Y-------VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG---AEHYA 355 (586)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~ 355 (586)
.|...|++++|++.|++..+ ..|+ . ..|..+...+...|++++|+..|+.+. .+.|+ ...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~ 157 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK----AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALY 157 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHH
Confidence 89999999999999999887 2344 3 457777778888899999999998886 34665 46677
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM-P-MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
.+...|...|+. .++++ . ...+...|..+. ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus 158 ~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 158 SLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777777665543 22222 1 112344444333 23455689999999999999999987777766543
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=2e-08 Score=99.78 Aligned_cols=157 Identities=7% Similarity=-0.148 Sum_probs=76.5
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCC----hhHHHHHHH
Q 007881 84 SNAVLGGRPKNAIDAFINLRRTGGEPDLI----TFCAFLNACSDCSLLQLGRQLHGFLVRSGF-DGN----VSVCNGLVD 154 (586)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ll~ 154 (586)
..+...|++++|...+++........+.. .+..+...+...|+++.|.+.+++..+... ..+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455677777777777765543222221 233444455566777777776666554310 011 122444555
Q ss_pred HHHhcCChHHHHHHHhcCCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHhHHHHHH
Q 007881 155 FYGKCNEVGLAKVVFDGIID-------K----NDVSWCSMLVVYVQNYEEENGCQMFLTARREGVE--P--KDFMISSVL 219 (586)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 219 (586)
.|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666665554311 0 1123344445555556666666555555432111 0 112333344
Q ss_pred HHHhcccCcHHHHHHHHHHHH
Q 007881 220 SACARIAGLELGRSVHAVAVK 240 (586)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~ 240 (586)
..+...|++++|...+.+...
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555554443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=2.1e-09 Score=98.72 Aligned_cols=187 Identities=11% Similarity=-0.074 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHH
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPE----RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVC 320 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ 320 (586)
|+..+..+...|.+.|++++|.+.|++..+ ++...|..+..++...|++++|++.|++..+ ..|+ ...+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~ 81 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK----KNYNLANAYIG 81 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcchHHHHHH
Confidence 456666777777788888888887776542 4556666677777778888888888887776 2344 456777
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCC-h-------HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHH
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPG-A-------EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT---ISVWGA 388 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ 388 (586)
+...+...|++++|+..|+...+. .|+ . ..|..+...+...|++++|++.|++. ...|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 777777888888888888777653 333 3 34666667777777777777777776 45555 345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...+.. .+...++++..+.+.+...|.... ....+.+++|...+++..+.
T Consensus 159 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5555543 344456666666665544443332 33456679999999988764
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1.1e-08 Score=101.85 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=156.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCC------CchhHHHH
Q 007881 184 LVVYVQNYEEENGCQMFLTARREGV-EPK----DFMISSVLSACARIAGLELGRSVHAVAVKACVE------GNIFVGSA 252 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 252 (586)
...+...|++++|+..|++....-. .++ ..++..+..++...|+++.|...+.+..+.... ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777654311 122 234556666677777777777777766653211 12446677
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccC--CCCCCHHHHHHH
Q 007881 253 LVDMYGKCGSIQDAEIAFNKMPE-----RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRC--EAVPNYVTLVCV 321 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--g~~pd~~t~~~l 321 (586)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++...... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 78888888888888887776542 12 24677788888888999999988888765100 111235677888
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCC--C-ChHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIK--P-GAEHYACVVDLLGRAGL---VDRAYEIIKEMPMRPTI-SVWGALLNACR 394 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~~~~ 394 (586)
...+.+.|++++|...++...+...-. | ....+..+...|...|+ +++|+..+++....|+. ..+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 889999999999999999887643221 2 24456667777778888 88999999987544433 45667788899
Q ss_pred HcCCHHHHHHHHHHHhcc
Q 007881 395 VYGKPELGRIAADNLFKL 412 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~ 412 (586)
..|++++|...++++.+.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999888753
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.8e-09 Score=103.47 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=120.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC-------C--CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCC-CHHHHHHHHH
Q 007881 256 MYGKCGSIQDAEIAFNKMPE-------R--NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVP-NYVTLVCVLS 323 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~p-d~~t~~~ll~ 323 (586)
.|...|++++|...|++..+ + ...+|+.+...|...|++++|+..|++..+.. .|-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555544321 1 13456667777777777777777777665511 11000 1346777888
Q ss_pred Hhhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 007881 324 ACSRA-GAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP---TI-----SVWGAL 389 (586)
Q Consensus 324 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~l 389 (586)
.|... |++++|+..|++..+-..-..+ ..++..+...|.+.|++++|++.|++. ...| +. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999887653211111 356788888999999999999999886 2222 21 256777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCchh-----HHHHHHHHh--hcCChHHHHHHHHHHH
Q 007881 390 LNACRVYGKPELGRIAADNLFKLDPNDSGN-----HVLLSNMFA--ATGRWEEADLVRKEMK 444 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~ 444 (586)
..++...|++++|+..+++.++++|..... +..++..|. ..+++++|...++++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 788889999999999999999998875443 334555554 4567888888776543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=2.2e-09 Score=101.73 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHhcccCcHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-
Q 007881 212 DFMISSVLSACARIAGLELGRSVHAVAVKA------CV-EGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-------R- 276 (586)
Q Consensus 212 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~- 276 (586)
..++..+...+...|++++|...+..+++. +- .....++..+...|...|++++|.+.|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555566666666666666666665543 11 11344566666666667777666666655421 1
Q ss_pred ---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc---C-CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 277 ---NLVCWNAIIGGYAHQGHADMALSSFEEMTSMR---C-EAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 277 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~-g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
...+|..+...|...|++++|+..|++..+.- . +-.|+ ..++..+...+...|++++|..+++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344444445555555555555555554410 0 00111 2334444444444555555555444443
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=3.4e-09 Score=101.45 Aligned_cols=245 Identities=11% Similarity=-0.044 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--C-ChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007881 129 LGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC--N-EVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 129 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
+|.+++.+..+.- ++....+ . |.+. + ++++|...|++ ....|...|++++|++.|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666652 3222222 1 2232 2 47777777655 36677788888888888877654
Q ss_pred C----CCCCC-HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeH
Q 007881 206 E----GVEPK-DFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVC 280 (586)
Q Consensus 206 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 280 (586)
. |-+++ ..+|..+..++...|++++|...+...++.. .+.|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH-----------HHH
Confidence 2 21111 2355555556666666666666555554321 112222221 234
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHhhhccCCCC-C-C-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCCh-----
Q 007881 281 WNAIIGGYAHQ-GHADMALSSFEEMTSMRCEAV-P-N-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGA----- 351 (586)
Q Consensus 281 ~~~li~~~~~~-g~~~~A~~~~~~m~~~~~g~~-p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----- 351 (586)
|+.+...|... |++++|+..|++..+...+.. + . ..++..+...+...|++++|+..|+...+...-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 55666677775 777777777777665211100 0 0 2456677777778888888888887776531111111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCC
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTIS------VWGALLNACR--VYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|+..++++..++|..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14566677777888888888888776 4444321 2334455553 3456777777777777777654
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=5.1e-09 Score=112.21 Aligned_cols=156 Identities=9% Similarity=0.025 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007881 146 VSVCNGLVDFYGKCNEVGLAKVVFDGIID---KNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSAC 222 (586)
Q Consensus 146 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 222 (586)
...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----------------- 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----------------- 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 44555555555555555555555554421 2344455555555555555555555555444
Q ss_pred hcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHH
Q 007881 223 ARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
..+. +...+..+..+|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++
T Consensus 72 ------------------l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 72 ------------------ISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp ------------------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3322 334444444445555555555554444332 233445555555555555555555
Q ss_pred HHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007881 300 SFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 300 ~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
.|++..+ +.|+ ...+..+..++...|++++|.+.++++
T Consensus 133 ~~~~Al~----l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 133 SYRTALK----LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHH----HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHH----hCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 5555554 2233 344555555555555555555555444
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=4.6e-08 Score=92.11 Aligned_cols=180 Identities=9% Similarity=0.010 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007881 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-----RNLVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
+...+++.+..+ .++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555544 33444455777788888888888888887633 244566677788888888888888888887
Q ss_pred hccCCCCC-----CHHHHHHHHHH--hhccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007881 306 SMRCEAVP-----NYVTLVCVLSA--CSRAG--AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 306 ~~~~g~~p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
+ ..| +..+...+..+ ....| ++++|..+|+++..+ .|+......+..++.+.|++++|.+.++.
T Consensus 164 ~----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 164 N----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp H----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred h----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 346 35566666655 33334 888888888888643 45533334444478888888888888876
Q ss_pred C-CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007881 377 M-PM----------RP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 377 m-~~----------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
+ .. .| |+.+...++......|+ +|.++++++.+..|+++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 5 21 13 45555456655556676 78889999999999887543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1e-08 Score=96.26 Aligned_cols=173 Identities=12% Similarity=0.005 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVC 320 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ 320 (586)
...+-.+...+.+.|++++|...|+++.+ |+ ..++..+..+|.+.|++++|+..|++..+...+-+.....+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455556666666666666666543 22 3455556666666667777777666666521111011334455
Q ss_pred HHHHhhc--------cCCHHHHHHHHHHhHHhcCCCCChH---------------HHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 321 VLSACSR--------AGAVEKGMKIFYSMTLKYGIKPGAE---------------HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 321 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
+..++.. .|++++|+..|+.+.+.+.-.+... .+..+...|.+.|++++|+..|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555 6677777777766665421111111 1245677888899999999998887
Q ss_pred -CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCchh
Q 007881 378 -PMRPT----ISVWGALLNACRVY----------GKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 378 -~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
...|+ ...+..+..++... |++++|+..++++++..|+++..
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 22233 45677777777755 88899999999999999987643
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=7.6e-08 Score=90.63 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=135.6
Q ss_pred HHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007881 266 AEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 266 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
|...|++..+ ++..++..+..++...|++++|++++.+.+. .+-.+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~--~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGID--NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 4555666788889999999999999999877 44212 4567788889999999999999999999
Q ss_pred HHhcCCCC-----ChHHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 342 TLKYGIKP-----GAEHYACVVDL--LGRAG--LVDRAYEIIKEM-PMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 342 ~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
.+. .| +..+...|..+ ....| ++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 653 67 34555556655 33334 999999999999 4446644445566688999999999999998887
Q ss_pred c----------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 412 L----------DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 412 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
. +|+++.+...++......|+ +|.++++++++.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6 48888888788777777887 899999999874
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=5.3e-08 Score=91.36 Aligned_cols=167 Identities=12% Similarity=0.016 Sum_probs=134.9
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG- 350 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 350 (586)
.+...+-.+...+.+.|++++|+..|+++.+. .|+ ...+..+..++...|++++|+..|+...+.+.-.|.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 45566777888899999999999999999882 243 567888889999999999999999999876332333
Q ss_pred hHHHHHHHHHHHh--------cCChHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHHcCCHHHHH
Q 007881 351 AEHYACVVDLLGR--------AGLVDRAYEIIKEM-PMRPT-ISVW-----------------GALLNACRVYGKPELGR 403 (586)
Q Consensus 351 ~~~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~-~~~~-----------------~~ll~~~~~~~~~~~a~ 403 (586)
...+..+...+.. .|++++|+..|++. ...|+ ...+ ..+...+...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4567788888888 99999999999987 22232 2222 45577789999999999
Q ss_pred HHHHHHhccCCCCc---hhHHHHHHHHhhc----------CChHHHHHHHHHHHhC
Q 007881 404 IAADNLFKLDPNDS---GNHVLLSNMFAAT----------GRWEEADLVRKEMKDV 446 (586)
Q Consensus 404 ~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 446 (586)
..++++++..|+++ ..+..++.+|... |++++|...++++.+.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999998854 4788888989876 9999999999998874
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.1e-08 Score=82.82 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=67.8
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCH
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-P-MRPTISVWGALLNACRVYGKP 399 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~ 399 (586)
...+...|++++|..+|+.+.+. .+.+...+..+...+...|++++|.+.++++ . .+.+...|..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444322 0112333444444444444444444444443 1 112344555666666666777
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 400 ELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 400 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++|...++++.+..|.+...+..++.+|...|++++|...++++.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777677777777777777777777777777655
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=2.8e-09 Score=90.77 Aligned_cols=140 Identities=10% Similarity=0.015 Sum_probs=108.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHh
Q 007881 286 GGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGR 363 (586)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 363 (586)
..+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|+..|+...+. .| +...|..+...|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcc----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 334456778888888887765 2343 455667778888888888888888888753 44 47788888888889
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCchhHHHHHHHHhhcCC
Q 007881 364 AGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIA-ADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
.|++++|+..|++. .+.| +..+|..+...+...|+.++|... ++++++++|+++.+|.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999998888887 4445 567888888889999998776654 689999999999999998888887774
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=4.7e-08 Score=89.45 Aligned_cols=180 Identities=9% Similarity=-0.006 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe----eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----H
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL----VCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY----V 316 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~----~ 316 (586)
...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+. .|+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCCcHHH
Confidence 33445566677778888888888877653 332 35666777788888888888888887762 2332 1
Q ss_pred HHHHHHHHhhc------------------cCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 317 TLVCVLSACSR------------------AGAVEKGMKIFYSMTLKYGIKPGA-EHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 317 t~~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
.+..+..++.. .|+.++|...|+.+.+. .|+. ..+..+... +......
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~------ 146 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH------
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH------
Confidence 33334444433 35566666666666533 2331 111111100 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 378 PMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS---GNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 378 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113455668889999999999999999999876 5688999999999999999999999887653
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=4.6e-08 Score=80.67 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
+|..+...+...|++++|..+|+++.+ .. +.+...+..+...+...|++++|..+|+.+... .+.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 566777778888888888888888876 22 234667777777888888888888888887653 1334667777888
Q ss_pred HHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007881 360 LLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
.+...|++++|.+.++++ .. ..+..+|..+...+...|++++|...++++.+.+|.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888888876 22 235677888888888889999999998888887775
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=4.8e-08 Score=93.08 Aligned_cols=161 Identities=9% Similarity=-0.007 Sum_probs=121.1
Q ss_pred CeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007881 277 NLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYA 355 (586)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 355 (586)
+...+..+...+.+.|++++|...|++... ..| +...+..+...+...|++++|...++.+... .|+.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~ 188 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQG 188 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHH
Confidence 344555666677778888888888888877 224 4567777778888888888888888877543 55544333
Q ss_pred HH-HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhhc
Q 007881 356 CV-VDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND--SGNHVLLSNMFAAT 430 (586)
Q Consensus 356 ~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~ 430 (586)
.. ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+..++.+|...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22 23356667777788777776 3334 57788888999999999999999999999999987 78899999999999
Q ss_pred CChHHHHHHHHHHH
Q 007881 431 GRWEEADLVRKEMK 444 (586)
Q Consensus 431 g~~~~a~~~~~~m~ 444 (586)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999988887754
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=1.6e-08 Score=95.69 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC-------CC
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARRE------GVEP-KDFMISSVLSACARIAGLELGRSVHAVAVKAC-------VE 244 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~ 244 (586)
+|..+...|...|++++|+..|++.... +-.| ...++..+..++...|++++|...+..+.+.. ..
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4444555555555555555555554432 1112 12344555555566666666666665555421 11
Q ss_pred C-chhHHHHHHHHHHh------cCCHHHHHHHHhhCCCC---CeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 245 G-NIFVGSALVDMYGK------CGSIQDAEIAFNKMPER---NLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 245 ~-~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
+ ....+..+...+.. ...+..+...++..... ...+|..+...|...|++++|..+|++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12222222222222 22244444555554432 234677788888889999999999888765
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1.4e-08 Score=109.17 Aligned_cols=167 Identities=10% Similarity=-0.012 Sum_probs=131.8
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHh
Q 007881 258 GKCGSIQDAEIAFNKMP-----------ERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSAC 325 (586)
Q Consensus 258 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~ 325 (586)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchHHHHHHHHHHH
Confidence 66788888888888765 245667888888888889999999999888872 24 467788888888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007881 326 SRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 402 (586)
...|++++|+..|+++.+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999888753 45 46778888888889999888 8888876 3344 567788888889999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007881 403 RIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
+..++++.+++|++..++..++.+|...|+
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999888888888888877665
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=7.6e-08 Score=84.23 Aligned_cols=156 Identities=10% Similarity=0.095 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-
Q 007881 283 AIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL- 360 (586)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~- 360 (586)
.+...+.+.|++++|+..|++..+ ..| +...+..+...+...|++++|+..|+.+... .|+...+..+...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 334445555555555555555544 112 2344555555555555555555555555432 2222222111111
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCChHHH
Q 007881 361 LGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND--SGNHVLLSNMFAATGRWEEA 436 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a 436 (586)
+...+...+|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11112222345555554 3334 46778888888889999999999999999988764 55888889999999999999
Q ss_pred HHHHHHHHh
Q 007881 437 DLVRKEMKD 445 (586)
Q Consensus 437 ~~~~~~m~~ 445 (586)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887653
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=2.5e-07 Score=83.66 Aligned_cols=162 Identities=9% Similarity=-0.086 Sum_probs=117.8
Q ss_pred CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHhHHhcCCCCCh
Q 007881 276 RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG----AVEKGMKIFYSMTLKYGIKPGA 351 (586)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~ 351 (586)
.+..++..+...|...+++++|++.|++..+ .| +...+..+...|.. + ++++|..+|+...+. -+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~ 85 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSK 85 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCH
Confidence 4555666666666667777777777777766 43 45566666666666 5 778888888777542 245
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchh
Q 007881 352 EHYACVVDLLGR----AGLVDRAYEIIKEM-PMRPT---ISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 352 ~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
..+..|...|.. .+++++|+++|++. ...|+ ...+..|...|.. .++.++|...++++.+. |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 666677777766 77888888888877 33332 6777888888877 77899999999999888 556778
Q ss_pred HHHHHHHHhhc-C-----ChHHHHHHHHHHHhCCC
Q 007881 420 HVLLSNMFAAT-G-----RWEEADLVRKEMKDVGI 448 (586)
Q Consensus 420 ~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 448 (586)
+..|+.+|... | +.++|...+++..+.|.
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888888754 3 89999999999887664
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.3e-07 Score=101.63 Aligned_cols=187 Identities=13% Similarity=0.027 Sum_probs=143.8
Q ss_pred hcccCcHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc
Q 007881 223 ARIAGLELGRSVHAVAV--------KACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ 291 (586)
Q Consensus 223 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 291 (586)
...|++++|.+.++++. +..+ .+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 4333 3567788888999999999999999998764 4667888899999999
Q ss_pred CCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHH
Q 007881 292 GHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDR 369 (586)
Q Consensus 292 g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 369 (586)
|++++|++.|++..+ ..| +...+..+..++.+.|++++ +..|+.+.+. .| +...|..+..+|.+.|++++
T Consensus 481 g~~~~A~~~~~~al~----l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD----TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHH----HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHH
Confidence 999999999999988 235 46788889999999999999 9999998754 45 46788899999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCch
Q 007881 370 AYEIIKEM-PMRPT-ISVWGALLNACRVYGK-----PELGRIAADNLFKLDPNDSG 418 (586)
Q Consensus 370 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 418 (586)
|++.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++.
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99999998 56676 4567777777655554 23344444444455444443
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.2e-07 Score=100.01 Aligned_cols=158 Identities=10% Similarity=0.037 Sum_probs=123.9
Q ss_pred cCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHH
Q 007881 260 CGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGM 335 (586)
Q Consensus 260 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~ 335 (586)
.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+ . .| +...+..+..++...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--L--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--T--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4789999999998875 4567899999999999999999999999988 2 35 4778889999999999999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 007881 336 KIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY---GKPELGRIAADNL 409 (586)
Q Consensus 336 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~ 409 (586)
..|++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++
T Consensus 78 ~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999764 44 4778999999999999999999999987 3334 577888999999999 9999999999999
Q ss_pred hccCCCCchhHHHHH
Q 007881 410 FKLDPNDSGNHVLLS 424 (586)
Q Consensus 410 ~~~~p~~~~~~~~l~ 424 (586)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999888887776
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=2.4e-07 Score=89.22 Aligned_cols=221 Identities=13% Similarity=0.032 Sum_probs=153.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007881 189 QNYEEENGCQMFLTARREGVEPKDFMISSVLSACAR-IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAE 267 (586)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 267 (586)
..|++++|.+++++..+.. +.. +.+ .++++.|...+..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577889999988876532 111 111 46677776666544 45677788888888
Q ss_pred HHHhhCCC-----CC----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhcc--CCCCCC--HHHHHHHHHHhhccCCHHHH
Q 007881 268 IAFNKMPE-----RN----LVCWNAIIGGYAHQGHADMALSSFEEMTSMR--CEAVPN--YVTLVCVLSACSRAGAVEKG 334 (586)
Q Consensus 268 ~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~g~~pd--~~t~~~ll~a~~~~g~~~~a 334 (586)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.. .| .|. ..++..+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 88776543 11 3477888888999999999999998876521 12 122 3577788888988 999999
Q ss_pred HHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHH
Q 007881 335 MKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PM---RPT----ISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 335 ~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~a 402 (586)
+..|++...-+.-..+ ..++..+...|.+.|++++|++.|++. .+ .++ ...+..+...+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988753211111 467888899999999999999999887 11 122 23566666777888999999
Q ss_pred HHHHHHHhccCCCCchh-----HHHHHHHHhhcCChHHHHHH
Q 007881 403 RIAADNLFKLDPNDSGN-----HVLLSNMFAATGRWEEADLV 439 (586)
Q Consensus 403 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 439 (586)
...+++.+ +.|..... ...++..+ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 88865432 33445544 56776666553
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=9e-06 Score=83.39 Aligned_cols=122 Identities=13% Similarity=-0.012 Sum_probs=60.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-LVDRAYEIIKEM--PMRPTISVWGALLNAC 393 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 393 (586)
.|...+..+.+.+.++.|..+|+.+ +.. ..+...|......-.+.+ +.+.|..+|+.. ...-+...|...+.-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444444444455566666666655 211 122333332222222222 466666666554 1111233344445545
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
...|+.+.|..+++++. .....+...+..-...|+.+.+.++++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666666666666652 2334455555545556777777776666653
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=5.6e-08 Score=82.56 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=101.4
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYG 397 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 397 (586)
|...+...|++++|+..++... ...|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677899999999998875 33454 445667889999999999999999997 4445 6788999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH-HHHHHh
Q 007881 398 KPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLV-RKEMKD 445 (586)
Q Consensus 398 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 445 (586)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577665
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=1.4e-07 Score=84.99 Aligned_cols=127 Identities=11% Similarity=0.036 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVD 359 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 359 (586)
+.+...|.+.|++++|+..|++..+ +.| +...+..+..++...|++++|+..|+.+.+. .|+ ...+..+..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~ 130 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ----KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGN 130 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH
Confidence 3377788888999999999998887 235 4677888888889999999999999888754 454 677778877
Q ss_pred HHHhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 360 LLGRAGL--VDRAYEIIKEMPMRPTI--SVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 360 ~~~~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
.|...|. .+.+...++... .|+. ..+..+..++...|++++|+..+++++++.|++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7766553 345566666552 3333 344555566777889999999999999999863
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=2.7e-07 Score=83.16 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhh
Q 007881 251 SALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACS 326 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~ 326 (586)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+ +.|+ ..++..+..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ----LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHH
Confidence 3456666667777777776666542 3455666666667777777777777777766 2243 455666666555
Q ss_pred ccCC--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 007881 327 RAGA--VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALL 390 (586)
Q Consensus 327 ~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 390 (586)
..|. .+.+...++... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4443 233444444332 11222223333444555567777777777765 5566655544443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=1.9e-07 Score=98.47 Aligned_cols=145 Identities=13% Similarity=0.003 Sum_probs=99.9
Q ss_pred ccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHH
Q 007881 225 IAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSF 301 (586)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 301 (586)
.|++++|...++++.+..+. +...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46778888888888776544 567788888888888888888888887654 35667888888888888888888888
Q ss_pred HHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc---CChHHHHHHHHh
Q 007881 302 EEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRA---GLVDRAYEIIKE 376 (586)
Q Consensus 302 ~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~ 376 (586)
++..+ . .| +...+..+..++...|++++|.+.|++..+. .| +...+..+...+... |+.++|.+.+++
T Consensus 81 ~~al~--~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 81 QQASD--A--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHH--H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHh--c--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 88887 2 24 4677888888888888888888888888754 34 467778888888888 888888888887
Q ss_pred C
Q 007881 377 M 377 (586)
Q Consensus 377 m 377 (586)
.
T Consensus 154 a 154 (568)
T 2vsy_A 154 A 154 (568)
T ss_dssp H
T ss_pred H
Confidence 6
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=5.6e-07 Score=85.64 Aligned_cols=161 Identities=9% Similarity=0.049 Sum_probs=105.3
Q ss_pred CHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHH-HHH
Q 007881 211 KDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAI-IGG 287 (586)
Q Consensus 211 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l-i~~ 287 (586)
+...+..+...+...|++++|...++++++..+. +...+..+...|.+.|++++|...|+++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3344555566667777777777777777776654 566777778888888888888888888764 433322222 223
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007881 288 YAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
+.+.++.++|+..|++... . .| +...+..+..++...|++++|+..|..+.+...-..+...+..++..|...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~--~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVA--E--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHh--c--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 5566677777777777776 2 24 45667777777777888888888887776541111125566677777777777
Q ss_pred hHHHHHHHHh
Q 007881 367 VDRAYEIIKE 376 (586)
Q Consensus 367 ~~~A~~~~~~ 376 (586)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7776666554
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=1.8e-06 Score=82.40 Aligned_cols=161 Identities=7% Similarity=-0.073 Sum_probs=116.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHH
Q 007881 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV----TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYA 355 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 355 (586)
.+..+...|++++|..++++..+. ....|+.. .+..+...+...|++++|+..|+.+.....-.++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 356677888888888888887762 12223321 2334666677778888888888888753111223 33678
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhH
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEMP-------MR-PT-ISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNH 420 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m~-------~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 420 (586)
.+...|...|++++|+..++++- .. +. ..++..+...|...|++++|...+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888899888888887761 11 11 2477888889999999999999999998864322 5678
Q ss_pred HHHHHHHhhcCC-hHHHHHHHHHHHh
Q 007881 421 VLLSNMFAATGR-WEEADLVRKEMKD 445 (586)
Q Consensus 421 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 445 (586)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988764
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=3.2e-07 Score=80.16 Aligned_cols=154 Identities=9% Similarity=-0.020 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH-h
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA-C 325 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a-~ 325 (586)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+...+...... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCChHHHHHHHHHHH
Confidence 33456667778888888888888764 4556777788888888888888888888766 22433322221111 1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHH
Q 007881 326 SRAGAVEKGMKIFYSMTLKYGIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT---ISVWGALLNACRVYGKPE 400 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~~~~~ 400 (586)
...+...+|...++...+. .|+ ...+..+...|...|++++|...|+++ ...|+ ...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1222233467777777643 454 677788888888888888888888876 44443 557888888888888888
Q ss_pred HHHHHHHHHh
Q 007881 401 LGRIAADNLF 410 (586)
Q Consensus 401 ~a~~~~~~~~ 410 (586)
+|...+++.+
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 8888887765
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=1.4e-07 Score=79.80 Aligned_cols=101 Identities=9% Similarity=-0.078 Sum_probs=87.9
Q ss_pred CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007881 346 GIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 346 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 556777788888999999999999887 3444 67889999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 007881 423 LSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++.+|...|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999874
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=4.4e-06 Score=79.37 Aligned_cols=210 Identities=11% Similarity=0.044 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CCeeHHHHHHHHH----Hhc---CCHHHH
Q 007881 230 LGRSVHAVAVKACVEGNIFVGSALVDMYGKCG--SIQDAEIAFNKMPE---RNLVCWNAIIGGY----AHQ---GHADMA 297 (586)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~----~~~---g~~~~A 297 (586)
+|..+...++..++. +..+++.--..+...| +++++++.++.+.. .+..+|+.--..+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 334444444443332 2333333333444444 45555555544432 2334444433333 223 455566
Q ss_pred HHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC------hHH
Q 007881 298 LSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE--KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL------VDR 369 (586)
Q Consensus 298 ~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 369 (586)
+++++++.+. . +-|...|..-...+.+.|.++ +++++++.+.+.. .-|...|+.-...+.+.|+ +++
T Consensus 130 L~~~~~~l~~--~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 130 FDILEAMLSS--D-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHh--C-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666551 1 113444444444444455555 6666666665431 2234444444444444444 666
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 007881 370 AYEIIKEM-PMR-PTISVWGALLNACRVYGKPEL-GRIAADNLFKLD---PNDSGNHVLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 370 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
+++.++++ ... -|...|+-+...+.+.|+... ...+++++.+++ |.++.+...++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666655 222 356667666666666665333 445666666655 666677777777777777777777777776
Q ss_pred Hh
Q 007881 444 KD 445 (586)
Q Consensus 444 ~~ 445 (586)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=5.6e-07 Score=82.22 Aligned_cols=183 Identities=14% Similarity=0.003 Sum_probs=130.5
Q ss_pred HhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCee----HHHH
Q 007881 212 DFMISSVLSACARIAGLELGRSVHAVAVKACVEGN--IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLV----CWNA 283 (586)
Q Consensus 212 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~----~~~~ 283 (586)
...+..+...+.+.|++++|...+..+++..+... ...+..+..+|.+.|++++|...|++..+ |+.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455666778899999999999999998765422 35677889999999999999999999764 4332 4555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHhhhccCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007881 284 IIGGYAH------------------QGHADMALSSFEEMTSMRCEAVPNYV-TLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 284 li~~~~~------------------~g~~~~A~~~~~~m~~~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
+..++.. .|+.++|+..|+++.+ ..|+.. ..... .....+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~P~~~~a~~a~--------------~~l~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR----GYPNSQYTTDAT--------------KRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT----TCTTCTTHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH----HCcCChhHHHHH--------------HHHHHHHHH
Confidence 5666654 5789999999999988 236532 22111 111111100
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007881 345 YGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 345 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.......+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|...++.+....|++.
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112234667788999999999999887 33343 24688888899999999999999999988888754
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=6e-07 Score=80.97 Aligned_cols=126 Identities=8% Similarity=-0.048 Sum_probs=104.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACR 394 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~ 394 (586)
.+..+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|++.+++. ... .+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3445566777888888888888766 3567788888888888888998888888876 222 35678888889999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCc----------------hhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 395 VYGKPELGRIAADNLFKLDPNDS----------------GNHVLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
..|++++|+..++++.+..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999888777 889999999999999999999999988753
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.65 E-value=1.7e-07 Score=79.35 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=85.4
Q ss_pred CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007881 346 GIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 346 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 33443 556677788888899999999988886 3334 67788888899999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 007881 423 LSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=1.1e-06 Score=79.44 Aligned_cols=172 Identities=10% Similarity=-0.116 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeHHHHHHHHHHhcC----CHHHHHHHHHHhh
Q 007881 231 GRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE-RNLVCWNAIIGGYAHQG----HADMALSSFEEMT 305 (586)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 305 (586)
|.+.+....+.| +...+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555543 455566666666666777777777766543 345556666666665 5 6777888877776
Q ss_pred hccCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHh----cCChHHHHHHH
Q 007881 306 SMRCEAVPNYVTLVCVLSACSR----AGAVEKGMKIFYSMTLKYGIKPG---AEHYACVVDLLGR----AGLVDRAYEII 374 (586)
Q Consensus 306 ~~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~ 374 (586)
+ .+ +...+..+...|.. .+++++|+.+|+...+ ..|+ ...+..|..+|.. .+++++|+..|
T Consensus 81 ~--~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 81 E--AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp H--TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred H--CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6 43 55666666666666 6788888888877753 2342 5677777777777 67788888888
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 007881 375 KEM-PMRPTISVWGALLNACRVY-G-----KPELGRIAADNLFKLDP 414 (586)
Q Consensus 375 ~~m-~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~p 414 (586)
++. ...++...+..|...|... | +.++|...++++.+.+.
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 876 2224555666666666543 2 78888888888877654
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=3.5e-07 Score=74.91 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=76.3
Q ss_pred CCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007881 311 AVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 311 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
+.|+ ...+......|.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344 345666667777777777777777776643 1224566677777777777777777777765 3333 456777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007881 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
.+..++...|++++|+..++++++++|++..++..|.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777788888888888888888877776666554
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=3e-07 Score=75.33 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007881 347 IKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 347 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4565 467778889999999999999999987 3444 678899999999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 007881 424 SNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=4.6e-06 Score=85.59 Aligned_cols=358 Identities=11% Similarity=-0.004 Sum_probs=210.3
Q ss_pred CC-CchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC--CCcccHHHHHHHHHcCCC-hhHHHHH
Q 007881 23 LH-IPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE--RNLATWNAYISNAVLGGR-PKNAIDA 98 (586)
Q Consensus 23 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 98 (586)
.| ++..|+.+++.++..- |. |+++.+..+|+.... |++..|..-+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777888888877642 22 889999999998765 888889888876666553 3556677
Q ss_pred HHHHHH-CCCCC-ChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-------------
Q 007881 99 FINLRR-TGGEP-DLITFCAFLNACSD----CSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKC------------- 159 (586)
Q Consensus 99 ~~~m~~-~g~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~------------- 159 (586)
|+.... .|..| +...|...+.-+.. .++++.+..+|+.+++.....-...|......-...
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 887755 35444 44556666655432 356788999999998743221122333322211111
Q ss_pred CChHHHHHHHhcCC----CCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCc
Q 007881 160 NEVGLAKVVFDGII----DKNDVSWCSMLVVYVQNYE-------EENGCQMFLTARREGVEPKDFMISSVLSACARIAGL 228 (586)
Q Consensus 160 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 228 (586)
+.+..|..+++.+. ..+...|...+.--..++. .+.+..+|+++.... +.+...|...+.-+.+.|+.
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 12223333333321 1233456554443222211 234667888877643 44566676667777788889
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC--C----------CCeeHHHHHHHHHHhcCCHH
Q 007881 229 ELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA-EIAFNKMP--E----------RNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~--~----------~~~~~~~~li~~~~~~g~~~ 295 (586)
+.|..++++.+.. +. +...+. .|+...+.++. ..+.+... + .....|...+..+.+.+..+
T Consensus 230 ~~ar~i~erAi~~-P~-~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 230 EKAKKVVERGIEM-SD-GMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HHHHHHHHHHHHH-CC-SSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhC-CC-cHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 9999999988888 32 333332 23322111111 12222211 0 11245666666666777888
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhh-ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007881 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACS-RAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
.|..+|++. .. .+ ++...|......-. ..++.+.|..+|+...+.++- +...+...++...+.|+.+.|..+|
T Consensus 304 ~AR~i~~~A-~~-~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 304 LFRKLFIEL-GN-EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHHHHHHHH-TT-SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHh-hC-CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888 41 22 23334432221111 233688899999888876432 2445666788888889999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 375 KEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 375 ~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 378 er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9883 2567788888777778888888887777654
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=1.7e-05 Score=75.35 Aligned_cols=228 Identities=9% Similarity=-0.050 Sum_probs=165.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccc--CcHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 007881 190 NYEEENGCQMFLTARREGVEPKDF-MISSVLSACARIA--GLELGRSVHAVAVKACVEGNIFVGSALVDMY----GKC-- 260 (586)
Q Consensus 190 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 260 (586)
....++|++++.++... .|+.. .++.--.++...+ +++++...+..++...++ +..+++.--..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 33446788888777763 45444 3455555556666 788888888888877665 455555444444 444
Q ss_pred -CCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH--HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC----
Q 007881 261 -GSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD--MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA---- 330 (586)
Q Consensus 261 -g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~---- 330 (586)
++++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+ .. .-|...|+.-...+.+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHhccccchh
Confidence 788899988888764 67788888887888888888 99999999998 33 2256677666666666666
Q ss_pred --HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHH
Q 007881 331 --VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR-AYEIIKEM-PM----RPTISVWGALLNACRVYGKPELG 402 (586)
Q Consensus 331 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~a 402 (586)
++++++.++.+... -+-|...|+-+-..+.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999988754 23457888888888888888554 55576665 22 24778899999999999999999
Q ss_pred HHHHHHHhc-cCCCCchhHHHHHH
Q 007881 403 RIAADNLFK-LDPNDSGNHVLLSN 425 (586)
Q Consensus 403 ~~~~~~~~~-~~p~~~~~~~~l~~ 425 (586)
.++++.+.+ .+|-....+...++
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 999999997 79987777665543
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=2e-06 Score=77.53 Aligned_cols=145 Identities=8% Similarity=-0.087 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccC
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAG 329 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g 329 (586)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++... .. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC-ccchHHHHHHHHHHHHcc
Confidence 334555666777777777777777666666777777777777777777777777666 21 123556666666666677
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007881 330 AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRP-TISVWGALLNACRVYGKPELGRIAADN 408 (586)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 408 (586)
++++|+..|+...+. .|+..... +...| +...| ....|..+..++...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777766666542 11100000 00000 01222 235677777788888888888888888
Q ss_pred HhccCCCC
Q 007881 409 LFKLDPND 416 (586)
Q Consensus 409 ~~~~~p~~ 416 (586)
+.+..|.+
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 88888875
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=1.3e-06 Score=75.02 Aligned_cols=128 Identities=13% Similarity=0.033 Sum_probs=97.6
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 393 (586)
..+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777778888888888777653 1234667777778888888888888888776 222 3567888888889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHH--HHhhcCChHHHHHHHHHHHh
Q 007881 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSN--MFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 445 (586)
...|++++|...++++.+..|.+...+..+.. .+...|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998877754444 47788999999999887654
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=1.1e-06 Score=71.10 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNA 392 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 392 (586)
...+..+...+...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666667777777777777777777653 1234566777777777888888888777776 22 2356778888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007881 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999989988888888877766543
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=1.4e-06 Score=83.12 Aligned_cols=164 Identities=7% Similarity=-0.056 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHhcC--CCCC--hH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY----VTLVCVLSACSRAGAVEKGMKIFYSMTLKYG--IKPG--AE 352 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 352 (586)
+...+..+...|++++|.+.+.+..+... ..++. ..+..+...+...|++++|+..++....... ..+. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34455666777788888887777665211 11111 1233445556677788888888877653211 1111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------Cc
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM----PMRPT-----ISVWGALLNACRVYGKPELGRIAADNLFKLDPN------DS 417 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 417 (586)
.|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777888888888888888888765 11122 257788888899999999999999988876422 14
Q ss_pred hhHHHHHHHHhhcCChHHH-HHHHHHHHh
Q 007881 418 GNHVLLSNMFAATGRWEEA-DLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 445 (586)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777777654
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=1.8e-06 Score=72.26 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556667778888888888888876 3333 67788888888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007881 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988763
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=1.4e-06 Score=71.44 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLN 391 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~ 391 (586)
+...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|++.+++. ... .+...|..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456666667777777777777777776532 1224566677777777777777777777765 222 35677888888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 007881 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGR 432 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 432 (586)
.+...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888999999999999998888888888888888776653
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.51 E-value=5.3e-07 Score=86.79 Aligned_cols=199 Identities=8% Similarity=-0.029 Sum_probs=149.3
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHH
Q 007881 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEE 303 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (586)
..|++++|.+++.+..+.... . .+...|++++|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899999888765332 1 11115889999888776 35678889999999999998
Q ss_pred hhhcc--CCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCC--CCC--hHHHHHHHHHHHhcCChHHHHHHHHh
Q 007881 304 MTSMR--CEAVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI--KPG--AEHYACVVDLLGRAGLVDRAYEIIKE 376 (586)
Q Consensus 304 m~~~~--~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (586)
..+.. .+-.+. ..+|..+...|...|++++|+..|+....-+.- .|. ..++..+...|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 87621 111111 357888899999999999999999887653211 111 4577888899988 999999999988
Q ss_pred C-CCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCChHHHHHHHHH
Q 007881 377 M-PMR---PT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS------GNHVLLSNMFAATGRWEEADLVRKE 442 (586)
Q Consensus 377 m-~~~---p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 442 (586)
. .+. .+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 45788888999999999999999999999765432 2566777788888999999999999
Q ss_pred HH
Q 007881 443 MK 444 (586)
Q Consensus 443 m~ 444 (586)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=1.8e-07 Score=88.82 Aligned_cols=190 Identities=7% Similarity=-0.053 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVL 322 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll 322 (586)
...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+ +.| +...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 34555566667777777777777766542 3556677777777777777777777777766 224 356667777
Q ss_pred HHhhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007881 323 SACSRAGAVEKGMKIFYSMTLKYGIKPGA-EHYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPEL 401 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~ 401 (586)
.++...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 7777777777777777776543 2211 011111111111111111111 2222223333333333 333 2688899
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhC
Q 007881 402 GRIAADNLFKLDPNDSGNHVLLSNMFAAT-GRWEEADLVRKEMKDV 446 (586)
Q Consensus 402 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 446 (586)
|...++++.+++|++......+...+.+. +++++|.++|.+..+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998877777777777766 7789999999988653
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=1.1e-06 Score=85.58 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----------------hHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----------------AEHYACVVDLLGRAGLVDRAYEIIKEM-P 378 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 378 (586)
..+..+...+.+.|++++|+..|+..... .|+ ...|..+..+|.+.|++++|++.+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 222 467888888899999999999998887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHHh
Q 007881 379 MRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEA-DLVRKEMKD 445 (586)
Q Consensus 379 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 445 (586)
..| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++| ...++.|..
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 6788999999999999999999999999999999999999999999999999998 456666643
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1.6e-06 Score=70.79 Aligned_cols=118 Identities=11% Similarity=-0.002 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLN 391 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 391 (586)
+...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3456666777777888888888888877653 1234667777788888888888888888776 2233 4677888888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 007881 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRW 433 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 433 (586)
.+...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999888888888888887765
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=7.5e-07 Score=82.75 Aligned_cols=135 Identities=13% Similarity=-0.026 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHH
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG--AEHYACVVD 359 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~ 359 (586)
-.....+...|++++|.++|..+.. .+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~--~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV--AG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC--TT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHH
Confidence 3455667777888888888877765 22 55444445555777888888888888755321 1 111 235667777
Q ss_pred HHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007881 360 LLGRAGLVDRAYEIIKEM---PMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
++.+.|++++|++.|++. +..|. ...+.....++.+.|+.++|...|+++...+|. ......|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 888888888888888877 22143 336667777788888888898888888888887 5544444
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.47 E-value=2.3e-05 Score=74.57 Aligned_cols=159 Identities=7% Similarity=-0.067 Sum_probs=118.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-----C----eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHH
Q 007881 253 LVDMYGKCGSIQDAEIAFNKMPER-----N----LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLV 319 (586)
Q Consensus 253 li~~~~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~ 319 (586)
.+..+...|++++|.+.+++..+. + ...+..+...+...|++++|+..|++....... .++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 467788899999999999886541 1 112334566667778999999999999872111 123 23688
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhc----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHH
Q 007881 320 CVLSACSRAGAVEKGMKIFYSMTLKY----GIKPG-AEHYACVVDLLGRAGLVDRAYEIIKEM-------PMRPT-ISVW 386 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~ 386 (586)
.+...|...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++. ...+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999887422 11222 347888999999999999999998876 11222 5788
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhcc
Q 007881 387 GALLNACRVYGK-PELGRIAADNLFKL 412 (586)
Q Consensus 387 ~~ll~~~~~~~~-~~~a~~~~~~~~~~ 412 (586)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999995 69999999988764
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=3.8e-06 Score=78.03 Aligned_cols=181 Identities=8% Similarity=-0.094 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHHhhCCC---CCeeHHHHH-------HHHHHhcCCHHHHHHHHHHhhhccCCCCCCH-------------
Q 007881 259 KCGSIQDAEIAFNKMPE---RNLVCWNAI-------IGGYAHQGHADMALSSFEEMTSMRCEAVPNY------------- 315 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~------------- 315 (586)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~----l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ----ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT----CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc----CChhhhhhhhccCCcccc
Confidence 46788888888887764 344677777 4555555566666666665544 33322
Q ss_pred ---------HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH---
Q 007881 316 ---------VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRPTI--- 383 (586)
Q Consensus 316 ---------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~--- 383 (586)
.....+...+...|++++|.+.|..+.. ..|+......+...+.+.+++++|+..|+.....|+.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 1223456678889999999999998863 3565446666777899999999999999977433433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 384 -SVWGALLNACRVYGKPELGRIAADNLFKLD--PN-DSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 384 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
..+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 467888889999999999999999998543 44 4457788899999999999999999999874
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=7.8e-06 Score=77.91 Aligned_cols=165 Identities=7% Similarity=-0.083 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe-------eHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC-CCCC--H
Q 007881 248 FVGSALVDMYGKCGSIQDAEIAFNKMPE--RNL-------VCWNAIIGGYAHQGHADMALSSFEEMTSMRCE-AVPN--Y 315 (586)
Q Consensus 248 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g-~~pd--~ 315 (586)
..+...+..+...|++++|.+.+++..+ +.. ..+..+...+...|++++|+..+++..+.... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778889999999888875432 111 22334555677788999999999988752111 1111 3
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------C
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-------T 382 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------~ 382 (586)
.+++.+...|...|++++|...|+.+.+.....|+ ..++..+...|.+.|++++|++.+++. ...+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999988732211222 257888899999999999999999876 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 007881 383 ISVWGALLNACRVYGKPELG-RIAADNLFKL 412 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 412 (586)
..+|..+...+...|++++| ...++++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888999999999999 7778887653
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=9.2e-07 Score=77.21 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=86.7
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--H
Q 007881 326 SRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNA-CRVYGKP--E 400 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~~--~ 400 (586)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45667777777777765431 234567777777788888888888877776 2222 56667777777 6678887 8
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 401 LGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+|...++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888898999999999988888764
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.5e-06 Score=69.64 Aligned_cols=96 Identities=13% Similarity=-0.056 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566667777778888888877776 2233 56778888888888899999999999999999988888899999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007881 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999998888763
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=2.8e-06 Score=67.18 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CchhHHHHHHH
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPN--DSGNHVLLSNM 426 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 426 (586)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555666666677777777776665 222 35667777888888888888888888888888888 88888888888
Q ss_pred Hhhc-CChHHHHHHHHHHHhCC
Q 007881 427 FAAT-GRWEEADLVRKEMKDVG 447 (586)
Q Consensus 427 ~~~~-g~~~~a~~~~~~m~~~g 447 (586)
|... |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 89999998888887654
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=1e-05 Score=72.03 Aligned_cols=153 Identities=11% Similarity=0.012 Sum_probs=84.9
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcC
Q 007881 290 HQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKP-GAEHYACVVDLLGRAG 365 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g 365 (586)
..|++++|.++++.... .......++..+...+...|++++|...+++..... +..| ....+..+...|...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333322 101123445555555555666666665555544311 1111 1344555666666666
Q ss_pred ChHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCC----chhHHHHHHHHhhc
Q 007881 366 LVDRAYEIIKEM-PM---RP-T----ISVWGALLNACRVYGKPELGRIAADNLFKLD--PND----SGNHVLLSNMFAAT 430 (586)
Q Consensus 366 ~~~~A~~~~~~m-~~---~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~ 430 (586)
++++|.+.+++. .. .+ + ..++..+...+...|++++|...+++..+.. ..+ ..++..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 666666666554 10 12 2 2345666667777788888887777777542 111 22356778888888
Q ss_pred CChHHHHHHHHHHHh
Q 007881 431 GRWEEADLVRKEMKD 445 (586)
Q Consensus 431 g~~~~a~~~~~~m~~ 445 (586)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888887765
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=6e-06 Score=68.27 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007881 349 PGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34666777777777777777777777765 2223 567788888888889999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHhC
Q 007881 427 FAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 427 ~~~~g~~~~a~~~~~~m~~~ 446 (586)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=1.1e-05 Score=64.29 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 393 (586)
..+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555566666666666655432 1223455555555666666666666666554 2222 455666666667
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007881 394 RVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
...|++++|...++++.+.+|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777766655555443
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=4e-06 Score=85.87 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=93.5
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK 398 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 398 (586)
...+.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566778888888888888754 44 3778888888888899999998888887 3444 57788899999999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHH--HhhcCChHHHHHHHHH
Q 007881 399 PELGRIAADNLFKLDPNDSGNHVLLSNM--FAATGRWEEADLVRKE 442 (586)
Q Consensus 399 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 442 (586)
+++|+..+++++++.|++...+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999998888887 8888999999999884
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=6.2e-06 Score=66.49 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 222 367889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007881 429 ATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 429 ~~g~~~~a~~~~~~m~~~ 446 (586)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=3e-06 Score=68.70 Aligned_cols=93 Identities=16% Similarity=0.024 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATG 431 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 431 (586)
+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445566777888888888888877 3334 67788888888999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 007881 432 RWEEADLVRKEMKDV 446 (586)
Q Consensus 432 ~~~~a~~~~~~m~~~ 446 (586)
++++|...+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988763
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00026 Score=67.92 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=105.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-
Q 007881 186 VYVQNYEEENGCQMFLTARREGVEPKDF-MISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC-G- 261 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 261 (586)
...+.+..++|++++.++... .|+.. .++.--.++...+ .++++..++..++...++ +..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 334455566788888888764 35433 3454444555556 477778888777777665 566666665556555 5
Q ss_pred CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHH--------HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC
Q 007881 262 SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHAD--------MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA 330 (586)
Q Consensus 262 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~ 330 (586)
+++++.++++.+.+ +|..+|+.-.-.+.+.|..+ ++++.++++.+ .. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HC-TTCHHHHHHHHHHHTTSTT
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHhccc
Confidence 67777777777765 45566666555555545454 77777777776 22 1255666666666666554
Q ss_pred -------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007881 331 -------VEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL 366 (586)
Q Consensus 331 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 366 (586)
++++++.++.+... -+-|...|+-+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56677777666543 12235555555555555554
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=4.5e-06 Score=71.73 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT 430 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (586)
.+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444443 1112 3444555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 007881 431 GRWEEADLVRKEMKD 445 (586)
Q Consensus 431 g~~~~a~~~~~~m~~ 445 (586)
|++++|.+.+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555544
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.30 E-value=5.6e-06 Score=69.91 Aligned_cols=103 Identities=5% Similarity=-0.024 Sum_probs=75.2
Q ss_pred CCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 007881 311 AVPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVW 386 (586)
Q Consensus 311 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 386 (586)
+.|+ ...+..+...+.+.|++++|+..|+.+... .| +...|..+..+|.+.|++++|++.|++. .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3344 345666677777788888888888777643 44 4667777778888888888888888776 3333 45677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 387 GALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 387 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
..+..++...|++++|+..|++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 788888888888888888888888888764
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=5.5e-06 Score=73.75 Aligned_cols=169 Identities=10% Similarity=-0.010 Sum_probs=97.5
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHH
Q 007881 256 MYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE 332 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~ 332 (586)
.....|++++|.+.|+.-.+ .....|..+...+...|++++|+..|++.... .|+...+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~----------- 77 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQ----------- 77 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCH-----------
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----Hhcccccchh-----------
Confidence 34445555665555554322 23345555666666667777777777666661 1221100000
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007881 333 KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 333 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
....-.. ......|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|+..+++++
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000000 001356677777888888888888888776 223 357788888899999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCChHHHH-HHHHHHHhCC
Q 007881 411 KLDPNDSGNHVLLSNMFAATGRWEEAD-LVRKEMKDVG 447 (586)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 447 (586)
+++|.+...+..+..++...|+.+++. ..+..|...|
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988888877776 5556555443
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=3e-06 Score=75.55 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007881 178 VSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 178 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
..++.+...+...|++++|+..|++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 344444555555555555555554443
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.5e-05 Score=66.61 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345555666666666777777777766652 3454 456666667777777777777777665 2223 566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
.+..++...|++++|...+++++++.|++...+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777888888888888888888888887776666655543
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=4e-06 Score=70.73 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=84.2
Q ss_pred CCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 007881 312 VPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWG 387 (586)
Q Consensus 312 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 387 (586)
.|+ ...+..+...+...|++++|+..|+..... .| +...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 353 456667777888889999999998888753 34 5677788888888999999999988887 3333 567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007881 388 ALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
.+..++...|++++|+..+++++++.|+++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888899999999999999999999998876554
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=8.6e-06 Score=64.91 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007881 350 GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567778889999999999999999987 3333 6788899999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 007881 428 AATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 428 ~~~g~~~~a~~~~~~m~~~ 446 (586)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998764
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=7.9e-06 Score=66.88 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=89.5
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007881 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
+.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++.+..|.+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344778888999999999999999999997 4444 67889999999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHhC
Q 007881 426 MFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 426 ~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.1e-05 Score=67.37 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007881 349 PGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
.+...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++.+..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35778888999999999999999999997 66677 67888899999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC
Q 007881 424 SNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.+|...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=7.3e-06 Score=71.35 Aligned_cols=127 Identities=10% Similarity=0.064 Sum_probs=98.6
Q ss_pred HhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCh
Q 007881 289 AHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL-LGRAGLV 367 (586)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~ 367 (586)
...|++++|+..+++..+ .. +.+...+..+...|...|++++|...|+.+.+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--AN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHH--HC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHH--hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence 456788899999988877 22 2356788888899999999999999999887542 2356777788888 7788998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007881 368 --DRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 368 --~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 3334 567888888999999999999999999999999876544
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=1.3e-05 Score=75.91 Aligned_cols=189 Identities=10% Similarity=-0.089 Sum_probs=113.1
Q ss_pred hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHH
Q 007881 213 FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYA 289 (586)
Q Consensus 213 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 289 (586)
..+..+...+...|++++|...+..+++..+. +...+..+...|.+.|++++|...+++..+ .+...|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34445555556666666666666666665443 566777788888888888888888887654 35567788888888
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChH
Q 007881 290 HQGHADMALSSFEEMTSMRCEAVPNY-VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVD 368 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 368 (586)
..|++++|+..|++..+. .|+. ..+...+....+ ..++.... ..... ...++......+...+ .|+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL----AKEQRLNFGDDIPSALR---IAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH----HHHTTCCCCSHHHHHHH---HHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHH---HHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 889999999888887762 1321 111111111111 11111111 12121 3444555544443332 68889
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHH-HHHHc-CCHHHHHHHHHHHhccC
Q 007881 369 RAYEIIKEM-PMRPTISVWGALLN-ACRVY-GKPELGRIAADNLFKLD 413 (586)
Q Consensus 369 ~A~~~~~~m-~~~p~~~~~~~ll~-~~~~~-~~~~~a~~~~~~~~~~~ 413 (586)
+|++.+++. ...|+......-+. .+... +.+++|..+|.++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 998888776 56676544333333 34443 66788899998887743
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00011 Score=70.54 Aligned_cols=213 Identities=12% Similarity=0.044 Sum_probs=155.1
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhc-C-CHHHHHHH
Q 007881 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG-SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQ-G-HADMALSS 300 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-g-~~~~A~~~ 300 (586)
..++|.++...++..++. +..+++.--..+...| .+++++++++.+.. .+..+|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 446788999999998876 6777887777777888 59999999998864 5667888877777776 7 89999999
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHhhccCCHH--------HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC------
Q 007881 301 FEEMTSMRCEAVPNYVTLVCVLSACSRAGAVE--------KGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGL------ 366 (586)
Q Consensus 301 ~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 366 (586)
++++.+ .. +-|...|+.-...+.+.|.++ ++++.++.+.+.. .-|...|+.....+.+.++
T Consensus 148 ~~k~L~--~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 148 IHGSLL--PD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHTS--SC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHH--hC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchH
Confidence 999988 32 225666665555555555555 8999999988651 3357778877788888776
Q ss_pred -hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 007881 367 -VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKP--------------------ELGRIAADNLFKLD------PNDS 417 (586)
Q Consensus 367 -~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~ 417 (586)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68899998877 3333 788898877777776654 22223333333322 4567
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+...|+.+|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7888999999999999999999999864
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.21 E-value=1.2e-05 Score=68.91 Aligned_cols=125 Identities=10% Similarity=-0.090 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
|..+...+...|++++|...|++..+ .. +.+...+..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE--LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 33444444455555555555555444 11 113444444555555555555555555554432 11224445555555
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHh
Q 007881 361 LGRAGLVDRAYEIIKEM-PMRP-TISVWG--ALLNACRVYGKPELGRIAADNLF 410 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~ 410 (586)
+.+.|++++|.+.+++. ...| +...+. .+...+...|++++|...+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 55555555555555544 1112 222332 22222444555666655555544
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.4e-05 Score=65.06 Aligned_cols=109 Identities=10% Similarity=-0.044 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 393 (586)
..+..+...+.+.|++++|+..|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555666666777777766666543 1223566666677777777777777777665 2233 466777777778
Q ss_pred HHcCCHHHHHHHHHHHhccC------CCCchhHHHHHHH
Q 007881 394 RVYGKPELGRIAADNLFKLD------PNDSGNHVLLSNM 426 (586)
Q Consensus 394 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 426 (586)
...|++++|...++++++++ |.+......+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 88888888888888888887 6666555555443
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.0002 Score=68.35 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCC-HHHHHHHH
Q 007881 228 LELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG--SIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGH-ADMALSSF 301 (586)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 301 (586)
++++..++..++...++ +..+++.-.-.+.+.| .++++..+++.+.+ .|..+|+.-.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45666666666666555 5566665555566666 36777777777653 566677766666666676 47777777
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHhhcc--------------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc--
Q 007881 302 EEMTSMRCEAVPNYVTLVCVLSACSRA--------------GAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRA-- 364 (586)
Q Consensus 302 ~~m~~~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-- 364 (586)
.++.+ .. +-|...|+.....+.+. +.++++++.+...... .| |...|+-+-..+.+.
T Consensus 169 ~~~I~--~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 169 DSLIT--RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHH--HC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSC
T ss_pred HHHHH--HC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccC
Confidence 77776 22 12455555444333332 3466777777766543 33 355555444444443
Q ss_pred ---------CChHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 007881 365 ---------GLVDRAYEIIKEM-PMRPTISVWGALLNAC-----RVYGKPELGRIAADNLFKLDPNDSGNHVLLSN 425 (586)
Q Consensus 365 ---------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 425 (586)
+.++++++.++++ ...||. .|..+-.++ ...+..++....+.++.+++|...+.|.-+..
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3456666666665 334443 333222221 12455566666777777777765555554433
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=1e-05 Score=67.52 Aligned_cols=106 Identities=13% Similarity=0.017 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLN 391 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 391 (586)
...+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345556667778888888888888887653 34 4667778888888888888888888876 2333 4567788888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007881 392 ACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
++...|++++|...+++++++.|+++......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999999999988877665443
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.18 E-value=1.7e-05 Score=64.51 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 007881 350 GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMR-PTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF 427 (586)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (586)
+...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 333 36788899999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHhC
Q 007881 428 AATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 428 ~~~g~~~~a~~~~~~m~~~ 446 (586)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=6.9e-06 Score=67.15 Aligned_cols=93 Identities=8% Similarity=-0.078 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-------hhHHHH
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS-------GNHVLL 423 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l 423 (586)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555566666666666666554 2223 455666666667777777777777777777665543 245566
Q ss_pred HHHHhhcCChHHHHHHHHHHHh
Q 007881 424 SNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 424 ~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+.+|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777777777777776654
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=1.9e-05 Score=67.77 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALL 390 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 390 (586)
+...+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3556777777888888888888888888754 34 5677888888888889999888888887 3334 577889999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007881 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.++...|++++|+..++++++++|++...+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999999887654443
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=9.6e-06 Score=67.96 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCchhH----HHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 384 SVWGALLNACRVYGKPELGRIAADNLFKL-------DPNDSGNH----VLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 384 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888889999998888888888 99999999 9999999999999999999999876
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.2e-05 Score=79.90 Aligned_cols=129 Identities=8% Similarity=-0.010 Sum_probs=91.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-------------ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-------------GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP- 381 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 381 (586)
.+..+...+.+.|++++|+..|+...+...-.+ ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444455555555555555555443211111 1467888888999999999999999887 3333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH-HHHHHHh
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL-VRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 445 (586)
+...|..+..++...|++++|+..|+++++++|++..++..+..++...|+++++.+ .++.|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999999999999988774 4555543
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.11 E-value=3e-05 Score=66.31 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 383 ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 383 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
...|..+..++...|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577888888899999999999999999999999999999999999999999999999888763
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=4.8e-05 Score=76.74 Aligned_cols=164 Identities=7% Similarity=-0.094 Sum_probs=108.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHhc---CCCCC-hH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNY----VTLVCVLSACSRAGAVEKGMKIFYSMTLKY---GIKPG-AE 352 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 352 (586)
+..+...|...|++++|.+.+.++......+ ++. ...+.+-..+...|+.++|..++....... +..+. ..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 5667777778888888888777766521111 222 123333344556678888888877664321 22222 55
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCC----c
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-----P--MRP-TISVWGALLNACRVYGKPELGRIAADNLFKLD---PND----S 417 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 417 (586)
++..|...|...|++++|..++++. . .+| ...++..++..|...|++++|...++++.... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7778888888889988888888775 1 112 23567777788888999999998888887653 222 2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 418 GNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
..+..++..+...|++++|...+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455677777888999998888776653
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.09 E-value=2.5e-05 Score=64.42 Aligned_cols=100 Identities=6% Similarity=-0.129 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007881 314 NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLN 391 (586)
Q Consensus 314 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 391 (586)
+...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566667777777777777777777776643 1223566777777777777777777777776 2233 4667778888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC
Q 007881 392 ACRVYGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~~~p~ 415 (586)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887766
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=1.6e-05 Score=64.83 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=51.1
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhh
Q 007881 358 VDLLGRAGLVDRAYEIIKEM-PMRPTI----SVWGALLNACRVYGKPELGRIAADNLFKLDPND---SGNHVLLSNMFAA 429 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 429 (586)
...+.+.|++++|.+.|++. ...|+. ..+..+..++...|++++|...++++.+..|++ +..+..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444555555555555554 111221 345555556666666666666666666666666 4556666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 007881 430 TGRWEEADLVRKEMKD 445 (586)
Q Consensus 430 ~g~~~~a~~~~~~m~~ 445 (586)
.|++++|...++++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666654
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=2.1e-05 Score=61.93 Aligned_cols=100 Identities=14% Similarity=0.037 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP---TISVWGALLN 391 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 391 (586)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455555666666666666666666543 1223555666666677777777777776665 2233 4666777777
Q ss_pred HHHHc-CCHHHHHHHHHHHhccCCCCc
Q 007881 392 ACRVY-GKPELGRIAADNLFKLDPNDS 417 (586)
Q Consensus 392 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 417 (586)
.+... |++++|...++++.+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777888888888777777653
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.08 E-value=0.00042 Score=66.18 Aligned_cols=178 Identities=9% Similarity=0.001 Sum_probs=130.0
Q ss_pred HHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCC--HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC-HHHHHH
Q 007881 263 IQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGH--ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA-VEKGMK 336 (586)
Q Consensus 263 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~ 336 (586)
++++..+++.+.. .+..+|+.-...+...|+ ++++++++.++.+. . +-|...|+.-...+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--d-prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--D-ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 5677777777653 577889888888888784 89999999999983 2 2366777766666777787 699999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----
Q 007881 337 IFYSMTLKYGIKPGAEHYACVVDLLGRA--------------GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVY---- 396 (586)
Q Consensus 337 ~~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---- 396 (586)
.++.+.+.. +-|...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 167 ~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 999998652 33566676666655554 4578899998887 2333 778887665555544
Q ss_pred -------CCHHHHHHHHHHHhccCCCCchhHHHHHHH---HhhcCChHHHHHHHHHHHh
Q 007881 397 -------GKPELGRIAADNLFKLDPNDSGNHVLLSNM---FAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 397 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~ 445 (586)
+.++++++.+++++++.|++...+..++.. ....|..+++...+.++++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457899999999999999986655444432 2346778888889988876
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=5.3e-05 Score=61.64 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=60.8
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhcCCCCC-h---HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKYGIKPG-A---EHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----ISVWGALLNA 392 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 392 (586)
...+...|++++|...|+.+.+. .|+ . ..+..+...+.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455556666666666655543 222 1 35555666666666666666666665 22222 4556667777
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007881 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
+...|++++|...++++.+..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 7788888888888888888888766554433
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=2.1e-05 Score=63.94 Aligned_cols=95 Identities=6% Similarity=-0.022 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------chhHHH
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM-PM-RPTISVWGALLNACRVYGKPELGRIAADNLFKLDPND-------SGNHVL 422 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 422 (586)
..+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|...++++.+..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566667777777777777777765 22 2356677778888888888899998888888887665 778889
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhC
Q 007881 423 LSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=3.9e-05 Score=64.95 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCch
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLDP------NDSG 418 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 418 (586)
.+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++.+..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555543 00111 34555666667777777777777777766421 1234
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 419 NHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 419 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+..++..|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 667788888889999999988887764
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=1.8e-05 Score=64.33 Aligned_cols=106 Identities=6% Similarity=-0.077 Sum_probs=56.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 007881 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PM----RPT----ISVWGA 388 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 388 (586)
+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444455555555555544432 1223444445555555555555555555544 11 112 456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 007881 389 LLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNM 426 (586)
Q Consensus 389 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 426 (586)
+...+...|++++|...++++.+..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 67777777777777777777777776 34444444443
No 177
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.02 E-value=4.8e-05 Score=73.94 Aligned_cols=93 Identities=6% Similarity=-0.058 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNAC 393 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 393 (586)
..|..+..++.+.|++++|+..|+.+.+. -+.+...|..+..+|...|++++|+..|++. .+.| +...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 55666666666666666666666666543 1223556666666666777777776666665 2233 455666666666
Q ss_pred HHcCCHHHH-HHHHHHHh
Q 007881 394 RVYGKPELG-RIAADNLF 410 (586)
Q Consensus 394 ~~~~~~~~a-~~~~~~~~ 410 (586)
...|+.++| ...++++.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 33444443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=5.5e-06 Score=66.57 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=51.3
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 007881 364 AGLVDRAYEIIKEM-PM---RP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADL 438 (586)
Q Consensus 364 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 438 (586)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 12 234566666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 007881 439 VRKEMKD 445 (586)
Q Consensus 439 ~~~~m~~ 445 (586)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=1.4e-05 Score=70.97 Aligned_cols=122 Identities=7% Similarity=-0.114 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-CC--------------h
Q 007881 50 SAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE-PD--------------L 111 (586)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~ 111 (586)
..+......|++++|.+.++.-.. .....|..+...+.+.|++++|+..|++....... |+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344445556777777777764432 23446777777888899999999999988764221 11 1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007881 112 ITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 112 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
..+..+..++...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344444445555555555555555555542 233444444455555555555555544443
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00011 Score=74.15 Aligned_cols=163 Identities=9% Similarity=-0.060 Sum_probs=95.2
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHhCCC-Cch----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----eeH
Q 007881 215 ISSVLSACARIAGLELGRSVHAVAVKACVE-GNI----FVGSALVDMYGKCGSIQDAEIAFNKMPE-----RN----LVC 280 (586)
Q Consensus 215 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~ 280 (586)
+..+...|...|++++|.+.+..+.+.-.. ++. .+.+.+...+...|+++.|..+++.... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344455555555555555555544432111 111 1223333334445666666666655431 11 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCC--CCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC-----hH
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEA--VPN-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG-----AE 352 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~--~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~ 352 (586)
+..+...|...|++++|..++++....-.+. .|. ..++..++..|...|++++|..+++.......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777888888888888887765421121 122 356777888888999999999888876543211111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777778888998888777655
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.00 E-value=5.4e-05 Score=61.72 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHH
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVL 322 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll 322 (586)
+..+...|.+.|++++|.+.|++..+ .+...|+.+..+|.+.|++++|++.|++.++......++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444555555555555555554332 233445555555555555555555555554411111111 12344444
Q ss_pred HHhhccCCHHHHHHHHHHhH
Q 007881 323 SACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 323 ~a~~~~g~~~~a~~~~~~~~ 342 (586)
.++...|++++|++.|+...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555544
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.4e-05 Score=76.12 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=77.7
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACV 357 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 357 (586)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA----YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH----HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHH
Confidence 34556666666777777777777777766 2344332 223333333332221 1367788
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH-hhcCChH
Q 007881 358 VDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMF-AATGRWE 434 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 434 (586)
..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..+..+. ...+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999988886 3334 6778888888999999999999999999999998888888887774 3456677
Q ss_pred HHHHHHHHHHhC
Q 007881 435 EADLVRKEMKDV 446 (586)
Q Consensus 435 ~a~~~~~~m~~~ 446 (586)
.+..++++|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888877653
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=0.00013 Score=74.61 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHH
Q 007881 257 YGKCGSIQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVE 332 (586)
Q Consensus 257 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~ 332 (586)
|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+ . .| +...+..+..+|...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--L--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--S--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3444555555555554332 2334445555555555555555555555544 1 12 2344444445555555555
Q ss_pred HHHHHHHHhH
Q 007881 333 KGMKIFYSMT 342 (586)
Q Consensus 333 ~a~~~~~~~~ 342 (586)
+|.+.|+++.
T Consensus 92 eA~~~~~~al 101 (477)
T 1wao_1 92 AALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=6.8e-05 Score=73.81 Aligned_cols=88 Identities=7% Similarity=-0.050 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888889999999999999999887 5555 57788899999999999999999999999999999999999999888
Q ss_pred hcCChHHHHH
Q 007881 429 ATGRWEEADL 438 (586)
Q Consensus 429 ~~g~~~~a~~ 438 (586)
..++.+++.+
T Consensus 353 ~~~~~~~a~k 362 (370)
T 1ihg_A 353 KIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=5.7e-05 Score=63.89 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----h
Q 007881 280 CWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN----YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----A 351 (586)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 351 (586)
++..+...|...|++++|+..+++..+.... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3444455555556666666655555441000 011 134555666666667777777666665432111111 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007881 352 EHYACVVDLLGRAGLVDRAYEIIKEM----PMRPT----ISVWGALLNACRVYGKPELGRIAADNLFKLD 413 (586)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 413 (586)
..+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++++|...++++.++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566666777777777777776664 10111 3456667777888888888888888877643
No 186
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.88 E-value=7.6e-05 Score=60.23 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=62.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007881 318 LVCVLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACR 394 (586)
Q Consensus 318 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 394 (586)
+..+...+.+.|++++|+..|+...+. .| +...|..+..++.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455666677777777777776643 34 4566666777777777777777777765 3334 4566777777778
Q ss_pred HcCCHHHHHHHHHHHhccCCCC
Q 007881 395 VYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
..|++++|+..++++++.+|.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 8888888888888888877764
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=2.7e-05 Score=62.38 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 007881 328 AGAVEKGMKIFYSMTLKYGI-KP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGR 403 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 403 (586)
.|++++|+..|++..+. +. .| +...+..+...|.+.|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555555555555421 10 12 2445556666666666666666666665 2223 4566667777777777788888
Q ss_pred HHHHHHhccCCCCchhH
Q 007881 404 IAADNLFKLDPNDSGNH 420 (586)
Q Consensus 404 ~~~~~~~~~~p~~~~~~ 420 (586)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888777777765443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.82 E-value=6.3e-05 Score=64.23 Aligned_cols=74 Identities=14% Similarity=-0.038 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-hhHHHHH
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDS-GNHVLLS 424 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 424 (586)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 467778888888899999998888876 3334 577888899999999999999999999999999887 4444443
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.00023 Score=72.32 Aligned_cols=124 Identities=9% Similarity=0.027 Sum_probs=94.3
Q ss_pred HhhccCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 007881 324 ACSRAGAVEKGMKIFYSMTLKYG--IKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM---------PMRPT-ISVWG 387 (586)
Q Consensus 324 a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 387 (586)
.+...|++++|+.++++...... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35567888888888876654321 2222 567888888899999999988888775 23344 35688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCchhH---HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 007881 388 ALLNACRVYGKPELGRIAADNLFK-----LDPNDSGNH---VLLSNMFAATGRWEEADLVRKEMKDVG 447 (586)
Q Consensus 388 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~g 447 (586)
.|...|...|++++|+.+++++++ ++|+.+.+- ..+...+...|++++|+.++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999887 467765544 467777888999999999999998743
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=3.6e-05 Score=64.45 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-PM-------RPT-ISVW----GALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665554 33 675 4577 889999999999999999999999999987765
Q ss_pred HH
Q 007881 420 HV 421 (586)
Q Consensus 420 ~~ 421 (586)
..
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=6.2e-05 Score=73.20 Aligned_cols=149 Identities=7% Similarity=-0.046 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Q 007881 247 IFVGSALVDMYGKCGSIQDAEIAFNKMPE--RNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSA 324 (586)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a 324 (586)
...+..+...|.+.|++++|...|++..+ |+.. .+...|+.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l---~---------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAV---K---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHH---H---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHH---H---------HHHHHHHHHH
Confidence 45677788899999999999999998653 3221 122233344433222 1 1266777888
Q ss_pred hhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCCHH
Q 007881 325 CSRAGAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNA-CRVYGKPE 400 (586)
Q Consensus 325 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~~~~~ 400 (586)
|.+.|++++|+..++...+. .| +...|..+..+|...|++++|...|++. .+.|+. ..+..|... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888753 34 5778888889999999999999999887 555543 344444443 23456677
Q ss_pred HHHHHHHHHhccCCCCc
Q 007881 401 LGRIAADNLFKLDPNDS 417 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~~~ 417 (586)
.+...+.+++...|.++
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 88889999988888654
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=7.4e-05 Score=58.79 Aligned_cols=91 Identities=13% Similarity=0.006 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------chhHH
Q 007881 350 GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND------SGNHV 421 (586)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 421 (586)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456667777777888888888887776 2233 56778888888899999999999999999999987 66666
Q ss_pred HHHHHHhhcCChHHHHHHH
Q 007881 422 LLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 422 ~l~~~~~~~g~~~~a~~~~ 440 (586)
.++.++...|+.++|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777776666665554433
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.00017 Score=55.77 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788899999999999999999999999999999999999999999999999999999988753
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=0.00047 Score=70.04 Aligned_cols=115 Identities=12% Similarity=-0.016 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 007881 329 GAVEKGMKIFYSMTLKYGIKP-GAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPT----------------ISVWGALL 390 (586)
Q Consensus 329 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll 390 (586)
+++++|...|+..... .| ....|..+...|.+.|++++|+..|++. ...|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444555555433321 22 2557788889999999999999999987 22232 57899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 391 NACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
.++.+.|++++|+..++++++++|++..++..++.+|...|++++|...|++..+.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999874
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00021 Score=53.70 Aligned_cols=81 Identities=23% Similarity=0.259 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFA 428 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (586)
...+..+...+.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666667777777777777777765 2223 56677888888888899999999999999989988888888887776
Q ss_pred hcC
Q 007881 429 ATG 431 (586)
Q Consensus 429 ~~g 431 (586)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.00098 Score=69.42 Aligned_cols=167 Identities=11% Similarity=0.016 Sum_probs=122.6
Q ss_pred HHHHHHHHhhCCC---CCeeHHHHHHHHHHhcCC----------HHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhcc
Q 007881 263 IQDAEIAFNKMPE---RNLVCWNAIIGGYAHQGH----------ADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRA 328 (586)
Q Consensus 263 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~ 328 (586)
-++|.+.++.+.+ .+..+|+.--..+...|+ ++++++.++++.+ . .| +..+|..-..++.+.
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--V--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--H--CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHc
Confidence 3456666666553 344566665555555555 7888888888887 2 24 456677666677777
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 007881 329 G--AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAG-LVDRAYEIIKEM-PMRP-TISVWGALLNACRVY------- 396 (586)
Q Consensus 329 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 396 (586)
| +++++++.++.+.+.. +-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 7 6688888888887641 234666777677777788 888899988887 4344 678888877776653
Q ss_pred -------CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 007881 397 -------GKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEE 435 (586)
Q Consensus 397 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 435 (586)
+.++++.+.+.+++..+|++..+|..+..++.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888554
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00029 Score=69.28 Aligned_cols=112 Identities=10% Similarity=0.047 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 007881 316 VTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMPMRP-TISVWGALLNACR 394 (586)
Q Consensus 316 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~ 394 (586)
..+..+...+.+.|++++|+..|+...+. .|... .....+++.+ ..| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777766532 01100 0001111111 122 4567888999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 395 VYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 395 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00016 Score=57.42 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=63.1
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 370 AYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 370 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|++.|++. ...| +...|..+...+...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555554 3333 5677888888899999999999999999999999999999999999999999999999998876
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.38 E-value=0.00016 Score=60.46 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=58.5
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-
Q 007881 365 GLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGK----------PELGRIAADNLFKLDPNDSGNHVLLSNMFAATG- 431 (586)
Q Consensus 365 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 431 (586)
+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444444444443 2222 33444444444444433 679999999999999999999999999999875
Q ss_pred ----------ChHHHHHHHHHHHhC
Q 007881 432 ----------RWEEADLVRKEMKDV 446 (586)
Q Consensus 432 ----------~~~~a~~~~~~m~~~ 446 (586)
++++|.+.|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 899999999999874
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.38 E-value=0.0012 Score=50.05 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 381 PTISVWGALLNACRVYGK---PELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
+|...+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778888888765555 79999999999999999999999999999999999999999999988653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.31 E-value=0.0029 Score=52.08 Aligned_cols=65 Identities=12% Similarity=-0.072 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 007881 382 TISVWGALLNACRV----YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAA----TGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 382 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 448 (586)
+...+..|...|.. .+++++|...++++.+. .++.....|+.+|.. .++.++|.+.+++..+.|.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 33444444444444 44555555555555554 234555666666666 5666666666666665543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00078 Score=52.69 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56678888999999999999999999999999999999999999999999999999999999864
No 203
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.29 E-value=0.043 Score=43.43 Aligned_cols=146 Identities=11% Similarity=0.061 Sum_probs=109.5
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 283 AIIGG--YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 283 ~li~~--~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
.|+.+ +.-.|..++..++..+... + .+..-||.++.-...+-+-+-..+.++.+-+-+.+
T Consensus 10 kLmeAK~~ildG~v~qGveii~k~~~--s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------- 71 (172)
T 1wy6_A 10 KLMDAKKFLLDGYIDEGVKIVLEITK--S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------- 71 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcC--C---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc-------------
Confidence 34444 4457888888998888877 2 35667777777666667777777777777443322
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 007881 361 LGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVR 440 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 440 (586)
..+|++.....-+-.++. +..-....+..+..+|+-+.-..+...++...|.++....-++++|.+.|+..+|.+++
T Consensus 72 -s~C~NlKrVi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 72 -DKCQNLKSVVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp -GGCSCTHHHHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HhhhcHHHHHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 246666666666666642 44556777888899999999999999987777888999999999999999999999999
Q ss_pred HHHHhCCCc
Q 007881 441 KEMKDVGIK 449 (586)
Q Consensus 441 ~~m~~~g~~ 449 (586)
++.-++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999985
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.29 E-value=0.0013 Score=66.88 Aligned_cols=125 Identities=10% Similarity=-0.054 Sum_probs=85.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCC-CCC---C-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc--CCC---CC-hHHHH
Q 007881 287 GYAHQGHADMALSSFEEMTSMRCE-AVP---N-YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY--GIK---PG-AEHYA 355 (586)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~~~~g-~~p---d-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~ 355 (586)
.+...|++++|+.++++..+.... +-| + ..+++.|..+|...|++++|..++++...-+ -+. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888776652111 112 2 3577888888888888888888887765321 112 22 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEM---------PMRPTIS-VWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
.|...|...|++++|+.++++. +..|+.. +.+.|-.++...+.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888775 2234433 334455556678888999988888765
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.18 E-value=0.002 Score=64.37 Aligned_cols=116 Identities=9% Similarity=0.109 Sum_probs=86.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCc---hh
Q 007881 358 VDLLGRAGLVDRAYEIIKEM-P-----MRPT----ISVWGALLNACRVYGKPELGRIAADNLFKL-----DPNDS---GN 419 (586)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~-----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 419 (586)
+..+.+.|++++|++++++. . +.|+ ..+++.|..+|...|++++|+.+++++++. +|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778888888888765 1 1222 357888889999999999999999988863 44444 46
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 007881 420 HVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNRIHIFQAKDTSHERNTEIQAMLTKLREEMK 491 (586)
Q Consensus 420 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 491 (586)
+..|+.+|...|++++|..++++..+--. ...+..||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999998875210 0123569988888888877777765
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.14 E-value=0.00051 Score=57.36 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=33.9
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCchh
Q 007881 368 DRAYEIIKEM-PMRP-TISVWGALLNACRVY-----------GKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 368 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
++|+..|++. .+.| +..+|..+..+|... |++++|+..|+++++++|++...
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 3555555544 3333 334555555555544 58999999999999999987533
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.14 E-value=0.009 Score=62.12 Aligned_cols=148 Identities=11% Similarity=0.021 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHhhhccCCCCCC-HHHHHHHHHHhhccCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 292 GHADMALSSFEEMTSMRCEAVPN-YVTLVCVLSACSRAGA----------VEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 292 g~~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
...++|++.++++.. +.|+ ...|+.--.++.+.|+ +++++..++.+.+.. +-+...|+--..+
T Consensus 43 ~~~eeal~~~~~~l~----~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345688999999998 3466 4556655555666666 899999999998652 3346777777778
Q ss_pred HHhcC--ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc-----
Q 007881 361 LGRAG--LVDRAYEIIKEM-PMR-PTISVWGALLNACRVYG-KPELGRIAADNLFKLDPNDSGNHVLLSNMFAAT----- 430 (586)
Q Consensus 361 ~~~~g--~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 430 (586)
+.+.| ++++++++++++ ... -+..+|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88889 779999999998 333 47889998888888888 899999999999999999999999888887763
Q ss_pred ---------CChHHHHHHHHHHHh
Q 007881 431 ---------GRWEEADLVRKEMKD 445 (586)
Q Consensus 431 ---------g~~~~a~~~~~~m~~ 445 (586)
++++++.+.+++...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 557888888877765
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.0017 Score=48.53 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
+...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34677888888999999999999999999999999999999999999999999999999998764
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.011 Score=56.79 Aligned_cols=63 Identities=19% Similarity=0.103 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555555555556666666666666666542 44555556666666666666666655544
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.04 E-value=0.0097 Score=48.86 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHH
Q 007881 90 GRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGK----CNEVGLA 165 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A 165 (586)
+++++|+..|++..+.| .|+. . +-..+...+.+++|.+.++...+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777766 2222 2 5555556666777777777777665 45666666666766 5667777
Q ss_pred HHHHhcCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 007881 166 KVVFDGIID-KNDVSWCSMLVVYVQ----NYEEENGCQMFLTARREG 207 (586)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 207 (586)
.+.|++..+ .++.++..|...|.. .+++++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 776665532 345555666666665 566666666666665554
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.04 E-value=0.003 Score=49.85 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDP 414 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 414 (586)
...+..+...|.+.|++++|+..|++. ...| +...|..+..++...|++++|...+++++++.|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 445555555666666666666666554 2222 355666666667777777777777777766655
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0066 Score=60.55 Aligned_cols=93 Identities=9% Similarity=-0.059 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 007881 328 AGAVEKGMKIFYSMTLKY--GIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM---------PMRPTI-SVWGALLN 391 (586)
Q Consensus 328 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~ 391 (586)
.|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677777666554321 12222 356667777777777777777776664 223433 45777777
Q ss_pred HHHHcCCHHHHHHHHHHHhc-----cCCCCchhH
Q 007881 392 ACRVYGKPELGRIAADNLFK-----LDPNDSGNH 420 (586)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 420 (586)
.|...|++++|+.+++++++ ++|+.+.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 77888888888877777766 356655443
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.81 E-value=0.00022 Score=69.72 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=168.5
Q ss_pred CChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 007881 43 HDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 43 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
..+.+|+.|..++.+.|++.+|+.-|-+ ..|+..|..+|....+.|.+++-+..+.-.++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 3567899999999999999998876644 45667788999999999999988887766655422 4455567888999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC------------------------CChh
Q 007881 123 DCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIID------------------------KNDV 178 (586)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 178 (586)
+.+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9998876555442 46777777888888899999999888876632 3677
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007881 179 SWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYG 258 (586)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (586)
+|-.+-.+|+..+.+.-|--.--.+. +.|| ....++.-|-..|.+++-..+++..... -.....+++-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 89999999999998877644333332 2222 2234555677788888877777766521 1235677888888888
Q ss_pred hcCCHHHHHHHHhhCCC-----------CCeeHHHHHHHHHHhcCCHHHHHH
Q 007881 259 KCGSIQDAEIAFNKMPE-----------RNLVCWNAIIGGYAHQGHADMALS 299 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~ 299 (586)
|- ++++-.+.++.... .....|.-++-.|.+-.++|.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 33444443333221 355678888888988888887753
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.80 E-value=0.0037 Score=48.02 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=32.9
Q ss_pred eeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 278 LVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVP-NYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
...|..+...|...|++++|+..|++..+. .| +...|..+..+|...|++++|...|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555556666666666555551 12 23455555555555666666665555554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.76 E-value=0.013 Score=58.59 Aligned_cols=101 Identities=11% Similarity=-0.056 Sum_probs=67.6
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 007881 322 LSACSRAGAVEKGMKIFYSMTLKY--GIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM---------PMRPT-ISV 385 (586)
Q Consensus 322 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 385 (586)
+..+.+.|++++|+.+++...... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334455667777777776665321 12222 456677777777778888777777665 23344 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCchhHHH
Q 007881 386 WGALLNACRVYGKPELGRIAADNLFK-----LDPNDSGNHVL 422 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 422 (586)
++.|...|...|++++|+.+++++++ ++|+.+.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888889999999999999988887 46777655543
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.01 Score=48.85 Aligned_cols=65 Identities=9% Similarity=-0.089 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 381 PTISVWGALLNACRVYG---KPELGRIAADNLFKLD-P-NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
++..+...+..++.+.+ +.++|+.+++.+.+.+ | .+...++.|+-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556666666666655 4457777777777766 5 3455666677777777777777777777765
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.11 Score=56.64 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=100.0
Q ss_pred HHHHcCCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007881 84 SNAVLGGRPKNAID-AFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEV 162 (586)
Q Consensus 84 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 162 (586)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+. . ..-.....+.|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 33445788888876 44211 1122336677777788888888766531 1 1113456778999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhC
Q 007881 163 GLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKAC 242 (586)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (586)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987763 567899999999999999999999987753 3444445555666666555554444443
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007881 243 VEGNIFVGSALVDMYGKCGSIQDAEIAFNKM 273 (586)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 273 (586)
- ++....+|.+.|++++|.+++.++
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 233444566677777776665443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0027 Score=63.39 Aligned_cols=83 Identities=8% Similarity=-0.022 Sum_probs=67.7
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCc---hhHHHHH
Q 007881 363 RAGLVDRAYEIIKEM---------PMRPT-ISVWGALLNACRVYGKPELGRIAADNLFKL-----DPNDS---GNHVLLS 424 (586)
Q Consensus 363 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 424 (586)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|+.+ .++..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889998888775 22233 367899999999999999999999999873 45544 5677899
Q ss_pred HHHhhcCChHHHHHHHHHHHh
Q 007881 425 NMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 425 ~~~~~~g~~~~a~~~~~~m~~ 445 (586)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.0056 Score=46.59 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=28.7
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 359 DLLGRAGLVDRAYEIIKEM-PMRP-TIS-VWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
..+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|++...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3344455555555555444 2222 233 44444444555555555555555555555544433
No 220
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.61 E-value=0.54 Score=48.93 Aligned_cols=254 Identities=9% Similarity=-0.025 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc
Q 007881 147 SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA 226 (586)
Q Consensus 147 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 226 (586)
..-+..+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+=..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3344555666677777777776665 33333333445566667777776766666655444 223334555555555444
Q ss_pred CcHHH--HHHHHHHHHhC-----------CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee---HHHHHHHHHH
Q 007881 227 GLELG--RSVHAVAVKAC-----------VEGN-IFVGSALVDMYGKCGSIQDAEIAFNKMPERNLV---CWNAIIGGYA 289 (586)
Q Consensus 227 ~~~~a--~~~~~~~~~~~-----------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~ 289 (586)
.+... .+=+..+...| +.++ ......++..+.+-..+ ....... .++.. .+..-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 33221 11111111111 1111 11122222222222222 1121111 11111 1111122223
Q ss_pred hcCCHHHHHHHHHHhhhccCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCh
Q 007881 290 HQGHADMALSSFEEMTSMRCEAVPNYV--TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLV 367 (586)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 367 (586)
+ .+.+.|..+|....+. ..+.+... ....+.......+...++...+...... .++.....-.+....+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQA-QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhc-cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 3667777777776541 22222221 2222333344444344555555544322 23333333333444466778
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007881 368 DRAYEIIKEMPMRP--TISVWGALLNACRVYGKPELGRIAADNLFK 411 (586)
Q Consensus 368 ~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 411 (586)
+.|...|+.|+..+ ...-..=+..++...|+.++|..+++.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887774432 122222334455667777777777777764
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.60 E-value=0.011 Score=44.83 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=52.8
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCC-ChH-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHc
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKP-GAE-HYACVVDLLGRAGLVDRAYEIIKEM-PMRPTI-SVWGALLNACRVY 396 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 396 (586)
....+...|++++|+..|+.+.+. .| +.. .+..+...|...|++++|.+.|++. ...|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 345667778888888888877653 34 345 6777777788888888888888776 333332 22211
Q ss_pred CCHHHHHHHHHHHhccCCCC
Q 007881 397 GKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 397 ~~~~~a~~~~~~~~~~~p~~ 416 (586)
+.+.++...+++....+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 34555666666655555544
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.54 E-value=0.068 Score=51.26 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=109.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHh--cCC---HHHHHHHHHHhhhccCCCCCC-HHHHHHHHHH
Q 007881 251 SALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAH--QGH---ADMALSSFEEMTSMRCEAVPN-YVTLVCVLSA 324 (586)
Q Consensus 251 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~~~g~~pd-~~t~~~ll~a 324 (586)
..++.++.-.-...++....... ..+..+|...+.+... .+. ..+|..+|++..+ ..|+ ...+..+..+
T Consensus 168 ~~I~~aL~~~l~~~e~~r~~~~~-p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~----lDP~~a~A~A~la~a 242 (372)
T 3ly7_A 168 ESLSKALNQPWPQRMQETLQKIL-PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALV 242 (372)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHS-CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHHHhCchhhHHHHHHHhccC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence 34444443333333444444443 3577889988877543 333 5789999999998 3476 4566655555
Q ss_pred hhcc---C-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 007881 325 CSRA---G-----AVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM-PMRPTISVWGALLNACRV 395 (586)
Q Consensus 325 ~~~~---g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 395 (586)
|... + ........+.........+.+...|..+.-.+...|++++|...++++ .+.|+...|..+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5311 1 111111122221111123556788888887788889999999999998 556888888888888999
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007881 396 YGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
.|++++|...++++..++|..+ +|...-
T Consensus 323 ~G~~~eA~e~~~~AlrL~P~~~-t~~~~~ 350 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLRPGAN-TLYWIE 350 (372)
T ss_dssp TTCHHHHHHHHHHHHHHSCSHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcC-hHHHHh
Confidence 9999999999999999999764 454443
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.15 E-value=0.071 Score=58.20 Aligned_cols=165 Identities=13% Similarity=0.036 Sum_probs=84.4
Q ss_pred hcCChHHHHH-HHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHH
Q 007881 158 KCNEVGLAKV-VFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHA 236 (586)
Q Consensus 158 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 236 (586)
..+++++|.+ ++..++.+ .....++..+.+.|.+++|+++.+. .. .-.......|+++.|.++..
T Consensus 611 ~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHH
Confidence 4566777766 55333301 1225566666667777777665421 10 01122344566666666543
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHH
Q 007881 237 VAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYV 316 (586)
Q Consensus 237 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~ 316 (586)
.+ .+...|..|..++.+.|+++.|++.|..+.. |..+...|...|+.+...
T Consensus 677 ~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~------------------ 727 (814)
T 3mkq_A 677 DE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLV------------------ 727 (814)
T ss_dssp TC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHH------------------
T ss_pred hh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHH------------------
Confidence 22 2456666677777777777777666665432 222222233333333333
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007881 317 TLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 317 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
.+.......|+++.|...|... | -+...+++|.+.+++++|..+-+..+
T Consensus 728 ---~~~~~a~~~~~~~~A~~~~~~~----g------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 728 ---TLAKDAETTGKFNLAFNAYWIA----G------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHHH----T------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ---HHHHHHHHcCchHHHHHHHHHc----C------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3333444445555555554332 1 12234555666777888888877763
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.96 E-value=0.029 Score=51.58 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=67.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-chhHHHHHHHHhhc-CChHHH
Q 007881 368 DRAYEIIKEM-PMRPT---ISVWGALLNACRV-----YGKPELGRIAADNLFKLDPND-SGNHVLLSNMFAAT-GRWEEA 436 (586)
Q Consensus 368 ~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 436 (586)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|+++++++|+. ..+++..+..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555554 44565 5677777777777 499999999999999999975 99999999999884 999999
Q ss_pred HHHHHHHHhCCCccCC
Q 007881 437 DLVRKEMKDVGIKKGA 452 (586)
Q Consensus 437 ~~~~~~m~~~g~~~~~ 452 (586)
.+.+++........+|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999999987665333
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.65 E-value=0.086 Score=40.51 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 007881 353 HYACVVDLLGRAGLVDRAYEIIKEM-----P----MRPTISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLL 423 (586)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 423 (586)
-+..|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...+++++++.|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555555555555555543 0 113456788888899999999999999999999999887664433
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.44 E-value=0.12 Score=38.70 Aligned_cols=68 Identities=10% Similarity=-0.010 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 349 PGAEHYACVVDLLGRAGL---VDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455666666666654443 57777777776 3344 45666666777888888888888888888888773
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.29 E-value=0.074 Score=43.78 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhH
Q 007881 349 PGAEHYACVVDLLGRAG---LVDRAYEIIKEM-PMR-P--TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNH 420 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 420 (586)
++..+...+..++.+.+ +.++++.++++. ... | +...+..|.-++.+.|++++|++.++.+++.+|++..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45555555555566655 444566655554 112 3 244566677778999999999999999999999876544
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.10 E-value=0.16 Score=40.17 Aligned_cols=64 Identities=9% Similarity=-0.083 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 382 TISVWGALLNACRVYGKPEL---GRIAADNLFKLD-P-NDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..+-..+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|++.++.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444333332 444444444443 2 1223344455555555555555555555543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.5 Score=39.88 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007881 256 MYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGM 335 (586)
Q Consensus 256 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 335 (586)
.-..+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ |..+.--|.-.|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHHHH
Confidence 345678888888777665 3566788888888888888888888877654 223444455566666555
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007881 336 KIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 336 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
.+-+....+ | -++.-...+.-.|+++++.+++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 444433222 1 13333444556777777777777664
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.94 E-value=1.5 Score=37.06 Aligned_cols=128 Identities=8% Similarity=-0.003 Sum_probs=73.7
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHH
Q 007881 156 YGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVH 235 (586)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 235 (586)
..++|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44667777777776655 3566777777777777777777777765532 333444444556665555444
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 007881 236 AVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMT 305 (586)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (586)
+.....| -++.....+.-.|+++++.++|.+..+.+.. +......|..+.|.++.+++-
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHhC
Confidence 4444433 1233444455677888877777665541111 111122566777777776653
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.58 E-value=1.2 Score=35.45 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=54.0
Q ss_pred hcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007881 259 KCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIF 338 (586)
Q Consensus 259 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 338 (586)
+||++......+-.+. .+..-.+.-+..+...|+-|+-.+++..+.. +.+|++.....+..||.+.|+..+|.+++
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4555555555444443 2333445556677777877777777777543 24567777777778888888888888888
Q ss_pred HHhHHhcCCC
Q 007881 339 YSMTLKYGIK 348 (586)
Q Consensus 339 ~~~~~~~~~~ 348 (586)
.++.++ |++
T Consensus 149 ~~AC~k-G~k 157 (172)
T 1wy6_A 149 IEACKK-GEK 157 (172)
T ss_dssp HHHHHT-TCH
T ss_pred HHHHHh-hhH
Confidence 777654 543
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.08 E-value=1.9 Score=34.71 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 381 PTISVWGALLNACRVYGK---PELGRIAADNLFKLDPN-DSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 381 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
|+..+--.+..++.+..+ ..+++.+++.+.+..|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455554455555555443 33566666666666653 233445666667777777777777777765
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.29 Score=51.92 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=49.3
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 007881 393 CRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMK 444 (586)
Q Consensus 393 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 444 (586)
|...|+++.|+.+.+++....|.+-.+|..|+..|...|+|+.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6678999999999999999999999999999999999999999999999884
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.36 E-value=0.54 Score=38.20 Aligned_cols=54 Identities=9% Similarity=0.000 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 007881 396 YGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIK 449 (586)
Q Consensus 396 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 449 (586)
.+++++|.++|+.++++...-+..+...+..-.+.|+...|++++.+....+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 378899999999998775555666777777778899999999999998876643
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.30 E-value=0.4 Score=36.65 Aligned_cols=64 Identities=13% Similarity=-0.011 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 382 TISVWGALLNACRVYGKPELGRIAADNLFKLD-------PNDSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 382 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+..-+..|...+...++++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556778888999999999999999998852 33456788999999999999999999999876
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.08 E-value=0.52 Score=46.54 Aligned_cols=341 Identities=10% Similarity=0.036 Sum_probs=186.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhcc------------------
Q 007881 9 NDFTFPCLFKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDE------------------ 70 (586)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------------------ 70 (586)
|+..|..++.++.+.|.+++-...+.-..+. ..++.+=+.|+-+|+|.+++.+-.+++..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~l 159 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 159 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCC
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccC
Confidence 6777889999999999888777766544443 45566677889999988876654333221
Q ss_pred ----------CC------------------------CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 007881 71 ----------MP------------------------ERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCA 116 (586)
Q Consensus 71 ----------~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 116 (586)
+. ..++.+|-.+-.+|...+.+.-|--.--.+.- .|| -...
T Consensus 160 YeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~e 234 (624)
T 3lvg_A 160 YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEE 234 (624)
T ss_dssp STTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSG
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHH
Confidence 11 02444555555555555554444333222221 111 1222
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC----CCC-------ChhhHHHHHH
Q 007881 117 FLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGI----IDK-------NDVSWCSMLV 185 (586)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~ 185 (586)
++..|-..|.+++-..+++..+... ......++-|.-.|+|- +.++..+-++.. .-| ....|..++-
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence 3334455555555555555444211 34566788888888776 344444433322 112 4557889999
Q ss_pred HHHHcCChHHHHHHH-------------HHHHHCCCCCCHhHH---------------HHHHHHHhcccCcHHHHHHHHH
Q 007881 186 VYVQNYEEENGCQMF-------------LTARREGVEPKDFMI---------------SSVLSACARIAGLELGRSVHAV 237 (586)
Q Consensus 186 ~~~~~g~~~~A~~~~-------------~~m~~~g~~p~~~t~---------------~~ll~~~~~~~~~~~a~~~~~~ 237 (586)
.|.+-.+++.|.... ++.... .+|...| +-+|.++...=+...+.+++..
T Consensus 313 LY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k 390 (624)
T 3lvg_A 313 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 390 (624)
T ss_dssp HHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHT
T ss_pred HHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHh
Confidence 999888888764321 111110 1222222 3344444443344444443332
Q ss_pred HHHh----------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------------eeHHHHH-HHHHHhcCCH
Q 007881 238 AVKA----------CVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERN------------LVCWNAI-IGGYAHQGHA 294 (586)
Q Consensus 238 ~~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~l-i~~~~~~g~~ 294 (586)
.-.. ...-+..+-.++-+.|....+++.-+...+.-..-| ..-+..+ ...|.+++++
T Consensus 391 ~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw 470 (624)
T 3lvg_A 391 VKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRW 470 (624)
T ss_dssp TTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHH
T ss_pred cCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccH
Confidence 1110 011234566677777777777766555544433222 2222222 2235667778
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007881 295 DMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEII 374 (586)
Q Consensus 295 ~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 374 (586)
++++++.++ .++ |.-.+...+.+|+.+-+.++++..+.. | +.+.|.+.+-.|...=+++.++++-
T Consensus 471 ~qsi~l~Kk-----Dkl------ykDAietAa~S~~~elaeeLL~yFv~~-g---~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 471 KQSVELCKK-----DSL------YKDAMQYASESKDTELAEELLQWFLQE-E---KRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp HHHSSCSST-----TCC------TTGGGTTTTTCCCTTHHHHHHHHHHHH-C---STHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHHHHHh-----ccc------HHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHHHHHHHHhhccChHHHHHHH
Confidence 887765432 222 223445567889999999988888764 2 4456666666666677788887774
Q ss_pred H
Q 007881 375 K 375 (586)
Q Consensus 375 ~ 375 (586)
-
T Consensus 536 W 536 (624)
T 3lvg_A 536 W 536 (624)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.81 E-value=6.2 Score=36.80 Aligned_cols=169 Identities=8% Similarity=0.023 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHhHHHHHHHHHh
Q 007881 148 VCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQM----FLTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778888888888887543 23345666776665554 445566788888888888887776
Q ss_pred cccCcH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhc---CC
Q 007881 224 RIAGLE-LGRSVHAVAVK----AC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQ---GH 293 (586)
Q Consensus 224 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 293 (586)
....-+ .-..+...+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 543221 12334444443 32 2347788899999999999999999988743322455555555444443 43
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007881 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLK 344 (586)
Q Consensus 294 ~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 344 (586)
..++-- ..-..++ -|...|++..|..+|+...++
T Consensus 184 ~~e~dl----------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE----------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH----------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH----------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1111222 345678888888888877644
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.76 E-value=1 Score=35.51 Aligned_cols=88 Identities=16% Similarity=0.018 Sum_probs=54.4
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHH
Q 007881 332 EKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDR---AYEIIKEM-PMR-P--TISVWGALLNACRVYGKPELGRI 404 (586)
Q Consensus 332 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~ 404 (586)
..+.+-|...... | .|+..+--.+..++.+.....+ ++.++++. ... | .......|.-++.+.|+++.|.+
T Consensus 18 ~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444332 2 2555555556666666665554 66666655 222 2 22344556677889999999999
Q ss_pred HHHHHhccCCCCchhHH
Q 007881 405 AADNLFKLDPNDSGNHV 421 (586)
Q Consensus 405 ~~~~~~~~~p~~~~~~~ 421 (586)
.++.+++.+|+|..+..
T Consensus 96 ~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHH
Confidence 99999999998865543
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.52 E-value=0.24 Score=45.53 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCC
Q 007881 353 HYACVVDLLGRA-----GLVDRAYEIIKEM-PMRPT--ISVWGALLNACRV-YGKPELGRIAADNLFKLDPN 415 (586)
Q Consensus 353 ~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~ 415 (586)
.|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.+++.+.++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344444444442 4555555555444 33331 3344444444444 25555555555555555443
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.23 E-value=19 Score=39.05 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=8.9
Q ss_pred HHHcCCChhHHHHHHHHH
Q 007881 85 NAVLGGRPKNAIDAFINL 102 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m 102 (586)
|....|+.++++.++...
T Consensus 383 GlIh~g~~~~gl~~L~~y 400 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPY 400 (963)
T ss_dssp HHHTSSCTTTHHHHHTTT
T ss_pred hhhccCchHHHHHHHHHh
Confidence 344455555555554443
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.15 E-value=3.2 Score=32.90 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 007881 401 LGRIAADNLFKLDPN-DSGNHVLLSNMFAATGRWEEADLVRKEMKD 445 (586)
Q Consensus 401 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 445 (586)
+++.+++.+.+.+|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445555555544442 223344455555555555555555555543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.14 E-value=1 Score=44.03 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCccCCc
Q 007881 386 WGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKD-----VGIKKGAG 453 (586)
Q Consensus 386 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 453 (586)
...++.++...|+.+++...+..+...+|-+...+..++.+|.+.|+..+|.+.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445566677888888888888888888998888899999999999999999988887754 47777653
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.33 E-value=10 Score=37.62 Aligned_cols=252 Identities=9% Similarity=-0.032 Sum_probs=123.7
Q ss_pred CCchHHHHHHHHHHHh-----CCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCC---CcccHHHHHHHH----HcCCC
Q 007881 24 HIPVTGKQLHALALKS-----GQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPER---NLATWNAYISNA----VLGGR 91 (586)
Q Consensus 24 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~----~~~g~ 91 (586)
+++..|.+.+-.+.+. .......+...++..+.+.|+++...+.+..+..+ -..+-..+++.+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777766666543 23445566778888999999988876655443321 111222333222 11222
Q ss_pred hhH--HHHHHHHHHH--CC-CCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCC---hhHHHHHHHHHHh
Q 007881 92 PKN--AIDAFINLRR--TG-GEPD---LITFCAFLNACSDCSLLQLGRQLHGFLVRS--GFDGN---VSVCNGLVDFYGK 158 (586)
Q Consensus 92 ~~~--A~~~~~~m~~--~g-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~ll~~~~~ 158 (586)
.+. -+.+.+.... .| +-.. ...-..|...+-..|++.+|..++..+... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 221 1111111110 11 0000 011134555566677888888777776432 21111 3456667777778
Q ss_pred cCChHHHHHHHhcCCC------CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHH----HHh
Q 007881 159 CNEVGLAKVVFDGIID------KN----DVSWCSMLVVYVQNYEEENGCQMFLTARRE-GVEPKDFMISSVLS----ACA 223 (586)
Q Consensus 159 ~g~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~----~~~ 223 (586)
.+++..|..++.++.. ++ ...+..++..+...+++.+|.+.|.+.... ....|...+..++. +..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 8888777776665411 11 124455666677777887777777666432 11122222221111 111
Q ss_pred cccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhhCCC
Q 007881 224 RIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKC--GSIQDAEIAFNKMPE 275 (586)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 275 (586)
-.+....-..+.........-++...+..++.+|... .+++.+.+.|.....
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 1111111122222222222234566677777777653 346666666665544
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.23 E-value=7.4 Score=28.92 Aligned_cols=87 Identities=8% Similarity=-0.080 Sum_probs=60.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007881 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
..-++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+...-||..+|-++-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667766666665542 33333333456778999999999999999999999988765 36788888888777777
Q ss_pred HCCCCCCHhHHH
Q 007881 205 REGVEPKDFMIS 216 (586)
Q Consensus 205 ~~g~~p~~~t~~ 216 (586)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 45444443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.89 E-value=6.9 Score=29.02 Aligned_cols=87 Identities=8% Similarity=-0.105 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007881 125 SLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (586)
..-++|.-+-+.+...+- ...+--.-+..+...|++++|..+.+...-||..+|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345666666666665542 33333333456778999999999999999999999988765 47888888888887887
Q ss_pred HCCCCCCHhHHH
Q 007881 205 REGVEPKDFMIS 216 (586)
Q Consensus 205 ~~g~~p~~~t~~ 216 (586)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 45444443
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.74 E-value=20 Score=34.71 Aligned_cols=58 Identities=3% Similarity=-0.081 Sum_probs=31.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPG----AEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
-+...|...|++.+|..++..+.+...-..| .++|..-+++|...+++.++...+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455566666666666666665543221111 344555556666666666666665544
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.40 E-value=21 Score=33.22 Aligned_cols=153 Identities=9% Similarity=-0.039 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHhCCCC-ChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHH----HH
Q 007881 26 PVTGKQLHALALKSGQIH-DVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDA----FI 100 (586)
Q Consensus 26 ~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~ 100 (586)
++...+-++.-++.|--- -...|.++..-|.+.+++++|+.++.. -...+.+.|+...|-++ .+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 334444444444444211 123567778888888999999888654 12345667887776665 55
Q ss_pred HHHHCCCCCChhhHHHHHHHHhcCCChH-HHHHHHHHHH----HhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007881 101 NLRRTGGEPDLITFCAFLNACSDCSLLQ-LGRQLHGFLV----RSGF--DGNVSVCNGLVDFYGKCNEVGLAKVVFDGII 173 (586)
Q Consensus 101 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 173 (586)
...+.++++|..+...++..+.....-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|+.-|=.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788889888888887776543211 1233333443 3331 2366778888888888888888888765222
Q ss_pred CCChhhHHHHHHHHHH
Q 007881 174 DKNDVSWCSMLVVYVQ 189 (586)
Q Consensus 174 ~~~~~~~~~li~~~~~ 189 (586)
..|...+..++.-+..
T Consensus 162 ~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 2234445444443333
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.94 E-value=8.9 Score=28.49 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 227 GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 35666666666666553 22222233445678999999999999999999999988755 467888888888877766
Q ss_pred ccCCCCCCHHHHH
Q 007881 307 MRCEAVPNYVTLV 319 (586)
Q Consensus 307 ~~~g~~pd~~t~~ 319 (586)
.| .|....|.
T Consensus 98 --sg-~p~~q~Fa 107 (116)
T 2p58_C 98 --SQ-DPRIQTFV 107 (116)
T ss_dssp --CC-CHHHHHHH
T ss_pred --CC-CHHHHHHH
Confidence 44 45555554
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.67 E-value=6.7 Score=32.48 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 007881 356 CVVDLLGRAGLVDRAYEIIKEMP 378 (586)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m~ 378 (586)
-+..+|.+.+++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 34455555666666666666554
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.78 E-value=25 Score=39.71 Aligned_cols=164 Identities=4% Similarity=-0.146 Sum_probs=90.6
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 007881 48 GCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 127 (586)
...++..+.+.+..+-|..+....+. +..+--.+..++...|++++|.+.|.+.- .|+.++.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhh
Confidence 34566667777888888777666554 33332334466778899999999997752 2232221110 000
Q ss_pred HHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhc----CCCCCh----hhHHHHHHHHHHcCChHHHH
Q 007881 128 QLGRQLHGFLVRSGF--DGNVSVCNGLVDFYGKCNEVGLAKVVFDG----IIDKND----VSWCSMLVVYVQNYEEENGC 197 (586)
Q Consensus 128 ~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A~ 197 (586)
.. ...+..... ..-..-|..++..+-+.+.++.+.++-.. ....+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 011111110 11123355666666666666655544322 122221 25788888889999999998
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhcccCcH
Q 007881 198 QMFLTARREGVEPKDFMISSVLSACARIAGLE 229 (586)
Q Consensus 198 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 229 (586)
..+..+.....+ ...+..++..++..+..+
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 888887765443 334555666566555443
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.67 E-value=6.2 Score=29.26 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=62.6
Q ss_pred CCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHH
Q 007881 24 HIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLR 103 (586)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 103 (586)
...++|.-+-+++...+- ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456888888888887653 33333333456778999999999999999999999988754 46787777777777776
Q ss_pred HCCCCCChhhHH
Q 007881 104 RTGGEPDLITFC 115 (586)
Q Consensus 104 ~~g~~p~~~t~~ 115 (586)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 655 34444443
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.63 E-value=50 Score=35.96 Aligned_cols=249 Identities=10% Similarity=-0.086 Sum_probs=128.4
Q ss_pred HHHhcCChHHHHHHHhcCCC----CChh--hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC---Hh--HHHHHHHH
Q 007881 155 FYGKCNEVGLAKVVFDGIID----KNDV--SWCSMLVVYVQNYEEENGCQMFLTARREGV--EPK---DF--MISSVLSA 221 (586)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~--t~~~ll~~ 221 (586)
+....|+.+++..+++.-.. .+.. .-..+.-|.+..|..++++.++.......- .-+ .. .-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34567788888888877654 1222 223344566777777788887777654321 001 11 11222222
Q ss_pred HhcccC-cHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeH--HHHHHHHHHhcCCHH
Q 007881 222 CARIAG-LELGRSVHAVAVKACVEGNI--FVGSALVDMYGKCGSIQDAEIAFNKMPE-RNLVC--WNAIIGGYAHQGHAD 295 (586)
Q Consensus 222 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~--~~~li~~~~~~g~~~ 295 (586)
.+-.|. -+++...+..++...-. .. ...-+|...|.-.|+-+....++..+.+ .+... .-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222332 23455555555443211 11 1122334445566777776766665432 22222 223333455678988
Q ss_pred HHHHHHHHhhhccCCCCCCH-HHHH---HHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007881 296 MALSSFEEMTSMRCEAVPNY-VTLV---CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAY 371 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~-~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 371 (586)
.+..+.+.+.. . .|. .-|. ++..+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.
T Consensus 542 ~~~~li~~L~~--~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 542 LADDLITKMLA--S---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGHHHHHHHHH--C---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHh--C---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888876 2 232 3333 3456788899987777788888652 2223333333333444467766666
Q ss_pred HHHHhCCCCCCHHHHH--HHHHHHHHcCCH-HHHHHHHHHHhc
Q 007881 372 EIIKEMPMRPTISVWG--ALLNACRVYGKP-ELGRIAADNLFK 411 (586)
Q Consensus 372 ~~~~~m~~~p~~~~~~--~ll~~~~~~~~~-~~a~~~~~~~~~ 411 (586)
++++.+....|..+-. ++.-+....|+. ..+...+..+..
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7766552222333333 333333333333 456666666643
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.19 E-value=16 Score=29.80 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHH
Q 007881 191 YEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGS 251 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (586)
++.++|.++|+.+.+.+-+- ...+......=.+.|++..|++++...+..+++|....-.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 57777777777776542222 3333333333356788899999998888888776544333
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.15 E-value=6.9 Score=29.20 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 294 ADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 294 ~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
.-+..+-++.+.. ..+.|++....+.+.||-+.+++..|.++|+.++.+. .+...+|..+++-
T Consensus 26 ~~e~rrglN~l~~--~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 4466666777766 7788999999999999999999999999999987653 3345567777643
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.55 E-value=7.8 Score=28.95 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007881 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455566666667788888888888888888888888888888776542 233445665553
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.11 E-value=34 Score=32.14 Aligned_cols=131 Identities=13% Similarity=0.041 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHh
Q 007881 47 VGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAF----INLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
.|.++..-|.+.+++++|+.++-. -...+.+.|+...|-++- +.+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 556677778889999999987643 123466678777666654 55667788999888888888777
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHH
Q 007881 123 DCSLLQ-LGRQLHGFLV----RSG--FDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYV 188 (586)
Q Consensus 123 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 188 (586)
....-+ .=..+.+.++ +.| ..-|......+...|.+.+++.+|+.-|=.-.++++..+..|+.-+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 665321 1223333333 233 22356677777778888888888877763212222244544443333
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.62 E-value=14 Score=39.18 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=45.9
Q ss_pred HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007881 221 ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMP 274 (586)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 274 (586)
.|...|+++.|..+-.+.+...+. +-.+|..|...|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 355678999999999999887654 78899999999999999999999999886
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.50 E-value=5.5 Score=38.79 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hcCCCCChH
Q 007881 284 IIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTL----KYGIKPGAE 352 (586)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~ 352 (586)
++..+...|++++|+..+..+.. . -+-+...+..++.++...|+..+|++.|+...+ +.|+.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--E-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--H-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 45555666777777766666655 1 123566666777777777777777776665433 235555544
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.10 E-value=37 Score=31.89 Aligned_cols=168 Identities=12% Similarity=0.038 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHhHHHHHHHHHh
Q 007881 148 VCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMF----LTARREGVEPKDFMISSVLSACA 223 (586)
Q Consensus 148 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 223 (586)
+|.++..-|.+.+++++|.+++-. -...+.+.|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778889999999887643 234456677776655544 45566788899888888888777
Q ss_pred cccCcHH-HHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHH
Q 007881 224 RIAGLEL-GRSVHAVAV----KAC--VEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADM 296 (586)
Q Consensus 224 ~~~~~~~-a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 296 (586)
....-+- =..+...++ +.| ..-|+.....+...|.+.+++.+|+..|-.-.++....+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 6554221 123333333 333 345778888999999999999999998853222333566555544443332111
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007881 297 ALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 297 A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
+|...-..++ -|...+++..|..+|+...+
T Consensus 186 ----------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ----------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 35557788888887766654
No 260
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.15 E-value=29 Score=29.50 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=22.4
Q ss_pred CCChhhhHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCC
Q 007881 42 IHDVFVGCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGR 91 (586)
Q Consensus 42 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 91 (586)
.+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|.
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 34444444444555555543333444444444444443344444444443
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.53 E-value=15 Score=30.33 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=11.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 007881 421 VLLSNMFAATGRWEEADLVRKEM 443 (586)
Q Consensus 421 ~~l~~~~~~~g~~~~a~~~~~~m 443 (586)
.-++..|.+.|++++|..+++.+
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCHHHHHHHHhcC
Confidence 34444455555555555554443
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.44 E-value=14 Score=29.35 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 349 PGAEHYACVVDLLGRAGLV---DRAYEIIKEM-PMRP--TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 349 p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
|+..+--.+..++.++... .+++.++++. ...| ....+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444445555555443 2345555444 1123 23455566677888888888888888888888887543
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.31 E-value=23 Score=28.49 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchh
Q 007881 348 KPGAEHYACVVDLLGRAGLVD---RAYEIIKEM-PMRP--TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGN 419 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 419 (586)
.|+..+--.+..++.++.+.+ +++.++++. ...| .-....-|.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 455555555566666665443 455555554 1223 23344556677899999999999999999999998544
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.93 E-value=15 Score=41.64 Aligned_cols=124 Identities=7% Similarity=-0.114 Sum_probs=82.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCC----------------
Q 007881 320 CVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRP---------------- 381 (586)
Q Consensus 320 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p---------------- 381 (586)
.++..+.+.+..+.+.++.... +.+...--.+..+|..+|++++|.+.|++. ++.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 4555666677777666654433 223333344566777888888888888876 1110
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCch-----hHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 007881 382 -------TISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSG-----NHVLLSNMFAATGRWEEADLVRKEMKDVGIK 449 (586)
Q Consensus 382 -------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 449 (586)
-..-|..++..+.+++.++.+.++...+++..+++.. .|..+...+...|++++|...+-.+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 1123566777788889999999988888876533222 4666777888899999998888777665443
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.29 E-value=11 Score=29.89 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007881 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVD 359 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 359 (586)
+..+-++.+.. ..+.|++......+.+|-+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~--~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 55566666666 778999999999999999999999999999999764 3444667777764
No 266
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.18 E-value=59 Score=32.06 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHhHHhc-CCCC--C--hHH
Q 007881 282 NAIIGGYAHQGHADMALSSFEEMTSMRCEAVPN---YVTLVCVLSACSRAGAVEKGMKIFYSMTLKY-GIKP--G--AEH 353 (586)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p--~--~~~ 353 (586)
..|...|...|++.+|.+++.++...-.+..+. ...+...+..|...+++.+|..++..+..+. ...+ + ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456778889999999999999987532332222 2356667788999999999999998874321 1222 2 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 007881 354 YACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
|.+++..+...+++.+|...|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 778888899999999998887766
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.54 E-value=45 Score=29.85 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=25.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCChh---hhHHHHHHHHhcCCchHHHHHhccC
Q 007881 16 LFKASSALHIPVTGKQLHALALKSGQIHDVF---VGCSAFDMYSKTGLKDDADKMFDEM 71 (586)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~ 71 (586)
.|...++.|+++.. +.+++.|..++.. ...+.+...++.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34444555665433 3344455443321 2233455555667776666666553
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.02 E-value=39 Score=28.90 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHh
Q 007881 246 NIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSAC 325 (586)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~ 325 (586)
+..+-...+.++.+.|+.+....+.+.+..++...-...+.++...|..+ +...+.++.. .||...-...+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK-----DEDGWVRQSAADAL 167 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHH
Confidence 44444444455555554333333333333444444444455555554432 3333333333 13444444455555
Q ss_pred hccCCHHHHHHHHHHh
Q 007881 326 SRAGAVEKGMKIFYSM 341 (586)
Q Consensus 326 ~~~g~~~~a~~~~~~~ 341 (586)
.+.+. .++...+..+
T Consensus 168 ~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKL 182 (211)
T ss_dssp HHHCS-HHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHH
Confidence 55544 2333344333
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=74.25 E-value=88 Score=32.60 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=23.2
Q ss_pred hHHHHHHHHH-----HHhcCChHHHHHHHHhCCCCCC
Q 007881 351 AEHYACVVDL-----LGRAGLVDRAYEIIKEMPMRPT 382 (586)
Q Consensus 351 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 382 (586)
..++..|.+. +...|++++|++.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455555443 3678999999999999976664
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.02 E-value=18 Score=28.61 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007881 94 NAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVD 154 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 154 (586)
+..+-++.+....+.|++......|++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666677789999999999999999999999999998776553 334555666553
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.16 E-value=57 Score=29.13 Aligned_cols=207 Identities=13% Similarity=0.045 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCchHHHHHhccCCCCCcc----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChh---hHHHHHHHH
Q 007881 49 CSAFDMYSKTGLKDDADKMFDEMPERNLA----TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLI---TFCAFLNAC 121 (586)
Q Consensus 49 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~ 121 (586)
++.+...++.|+++....+++.-...+.. -+ +.+...+..|+.+ +++.+.+.|..|+.. ..+.+ ...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF-LLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH-HHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHH
Confidence 44566667888888888888765543322 23 3444556667754 455555667655432 22333 333
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhcCCCCChh-------------hHHHHHHH
Q 007881 122 SDCSLLQLGRQLHGFLVRSGFDGNVSV--CNGLVDFYGKCNEVGLAKVVFDGIIDKNDV-------------SWCSMLVV 186 (586)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~ 186 (586)
+..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-...+++.-...+.. .++. +..
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~-L~~ 154 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA-LMD 154 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH-HHH
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH-HHH
Confidence 3445554 4455566675554321 123445556778888877777765433221 1223 333
Q ss_pred HHHcCChHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhc
Q 007881 187 YVQNYEEENGCQMFLTARRE-GVEPKD---FMISSVLSACARIAGLELGRSVHAVAVKACVEGNIF--VGSALVDMYGKC 260 (586)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~ 260 (586)
.+..|+.+- ++.+.+. |..++. ...+.+..+ +..+.......+.+.+.+.|..++.. ...+.+...++.
T Consensus 155 A~~~~~~~~----v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AAEKGHVEV----LKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHTCHHH----HHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHH----HHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 345555443 3334443 444432 222333333 34455555566777777777665432 122334455667
Q ss_pred CCHHHHHHHHh
Q 007881 261 GSIQDAEIAFN 271 (586)
Q Consensus 261 g~~~~A~~~~~ 271 (586)
|..+-+..+++
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 77777777776
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.49 E-value=9.1 Score=34.58 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007881 360 LLGRAGLVDRAYEIIKEM-PMRP-TISVWGALLNACRVYGKPELGRIAADNLFKLDPND 416 (586)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 416 (586)
.+.+.|.+++|++....- ...| |...-..|+.-+|..|+++.|..-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345666666666655543 3333 44444555566666777777776666666666653
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.08 E-value=63 Score=29.16 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007881 288 YAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMT 342 (586)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 342 (586)
..+.|..++|++....-++ .. +-|...-..++.-+|-.|++++|..-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--AS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--hC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445556666655555554 21 1234444455555556666666665555553
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=67.91 E-value=36 Score=31.02 Aligned_cols=19 Identities=0% Similarity=-0.256 Sum_probs=10.2
Q ss_pred HHHHHhcCCchHHHHHhcc
Q 007881 52 FDMYSKTGLKDDADKMFDE 70 (586)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~ 70 (586)
+...++.|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344455666666555554
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.40 E-value=60 Score=29.43 Aligned_cols=139 Identities=7% Similarity=-0.061 Sum_probs=69.4
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCCC---CcccHHHHHHHHHcCCChhHHH
Q 007881 20 SSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPER---NLATWNAYISNAVLGGRPKNAI 96 (586)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 96 (586)
.+..|+.+. .+.+++.|..++..-..+.+...+..|+.+-+..+++.-..+ |..-++.|. ..+..|+.+-
T Consensus 38 A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~-- 110 (285)
T 3kea_A 38 AIADNNVRL----VCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQT-- 110 (285)
T ss_dssp HHHTTCHHH----HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHH--
T ss_pred HHHcCCHHH----HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHH--
Confidence 344566544 444555565554433445566666778888777777754432 333334443 3445566543
Q ss_pred HHHHHHHHCCCCCChhh---HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHHhc
Q 007881 97 DAFINLRRTGGEPDLIT---FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS-VCNGLVDFYGKCNEVGLAKVVFDG 171 (586)
Q Consensus 97 ~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~ 171 (586)
++.+.+.|..|+... +.+.+...+..|+.+- .+.+++.|..+... ...+.+...++.|+.+-+.-+++.
T Consensus 111 --v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 111 --VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp --HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 333333454444322 1234444445566543 33444455333211 334445555667777766666544
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.99 E-value=51 Score=32.33 Aligned_cols=59 Identities=10% Similarity=-0.046 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007881 283 AIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSM 341 (586)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 341 (586)
.+..-|.+.|+.++|.+.|.++...-.+..--...+..++..+...+++..+......+
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444444444444444444311111111233334444444455555555544444
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.75 E-value=61 Score=28.10 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=11.3
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCC
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGE 108 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~ 108 (586)
..++.|+.+-...+++.+...|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334455555544455444444433
No 278
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.81 E-value=68 Score=33.43 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=22.7
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 007881 78 TWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSD 123 (586)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 123 (586)
.|- +|--+.|.|++++|.++.++.... +.--...|...+..++.
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 453 455667788888888777665321 11111345556666653
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.23 E-value=59 Score=31.84 Aligned_cols=33 Identities=6% Similarity=-0.139 Sum_probs=22.2
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 414 PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 414 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
|-.......++..+.- ..+++.+.+.+|...|-
T Consensus 344 ~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 344 SYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp TCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 4455666667666643 46788888888887653
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.76 E-value=66 Score=25.26 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 007881 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKN---DVSWCSMLVVYVQNYE--EENGCQMFLTARREGVEPKD 212 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 212 (586)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3557777778888888888888876552 1233344444444432 34566777777776654433
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.37 E-value=96 Score=26.01 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=8.1
Q ss_pred CCHhHHHHHHHHHhcccC
Q 007881 210 PKDFMISSVLSACARIAG 227 (586)
Q Consensus 210 p~~~t~~~ll~~~~~~~~ 227 (586)
++...-...+.++.+.++
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444444
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.32 E-value=1e+02 Score=26.34 Aligned_cols=88 Identities=9% Similarity=0.092 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCceeeeeeCCE
Q 007881 385 VWGALLNACRVYGKPELGRIAADNLFKL--DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKGAGCSWISVKNR 462 (586)
Q Consensus 385 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~ 462 (586)
.|-..+..| ..++...+..+|..+... +-.-+..|...+..+...|++++|.++++.-.+++-.|.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~----------- 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY----------- 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH-----------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH-----------
Confidence 344444333 234466888888888775 456677888999999999999999999999888765442
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHHHHcCcccC
Q 007881 463 IHIFQAKDTSHERNTEIQAMLTKLREEMKAAGYIPD 498 (586)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd 498 (586)
+.......+...+|.+.+++.|
T Consensus 150 --------------~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 150 --------------NRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCCCC
T ss_pred --------------HHHHHHHHHHHHHHHhcCCCCC
Confidence 3334445577788888887433
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.96 E-value=43 Score=29.04 Aligned_cols=49 Identities=6% Similarity=-0.134 Sum_probs=26.0
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChh--hhHHHHHHHHhcCCchHHHHHhccCCC
Q 007881 21 SALHIPVTGKQLHALALKSGQIHDVF--VGCSAFDMYSKTGLKDDADKMFDEMPE 73 (586)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~ 73 (586)
+..|+++. .+.+++.|..++.. ...+.+...++.|+.+-+..+++.-..
T Consensus 17 ~~~g~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 17 TQYGIYER----CRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHcCChHH----HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 34555543 34444555444322 223455566677777777777665543
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.69 E-value=83 Score=26.27 Aligned_cols=17 Identities=0% Similarity=0.147 Sum_probs=9.6
Q ss_pred HhcCCchHHHHHhccCC
Q 007881 56 SKTGLKDDADKMFDEMP 72 (586)
Q Consensus 56 ~~~g~~~~A~~~~~~~~ 72 (586)
+..|+.+....+++.-.
T Consensus 13 ~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHTTCHHHHHHHHTCTT
T ss_pred HHhccHHHHHHHHHcCC
Confidence 34566666666665443
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.65 E-value=1.3e+02 Score=25.95 Aligned_cols=82 Identities=11% Similarity=-0.001 Sum_probs=44.3
Q ss_pred HHHhcCCCchHHHHHHHHHHHhCCCCChh--hhHHHHHHHHhcCCchHHHHHhccCCCC---CcccHHHHHHHHHcCCCh
Q 007881 18 KASSALHIPVTGKQLHALALKSGQIHDVF--VGCSAFDMYSKTGLKDDADKMFDEMPER---NLATWNAYISNAVLGGRP 92 (586)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 92 (586)
...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..+ |..-++. +...+..|+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~ 92 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSP 92 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCH
Confidence 33445678888888877777666554432 1233455556677777776666644332 2222233 3334456665
Q ss_pred hHHHHHHH
Q 007881 93 KNAIDAFI 100 (586)
Q Consensus 93 ~~A~~~~~ 100 (586)
+-+..+++
T Consensus 93 ~~~~~Ll~ 100 (241)
T 1k1a_A 93 TCLRALLD 100 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.19 E-value=69 Score=27.61 Aligned_cols=108 Identities=9% Similarity=0.079 Sum_probs=48.7
Q ss_pred HHhcCCchHHHHHhccCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhh---HHHHHHHHhcCCChH
Q 007881 55 YSKTGLKDDADKMFDEMPER---NLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLIT---FCAFLNACSDCSLLQ 128 (586)
Q Consensus 55 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~ 128 (586)
.++.|+++....+++.-..+ +..-+ +.+...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Confidence 45677777777777654332 22222 2344455566653 3444445554433211 112222333344444
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhc
Q 007881 129 LGRQLHGFLVRSGFDGNVS--VCNGLVDFYGKCNEVGLAKVVFDG 171 (586)
Q Consensus 129 ~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~ 171 (586)
+.+.+++.|..++.. .....+...++.|+.+-+..+++.
T Consensus 91 ----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 91 ----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 334444555444321 111233344455666655555544
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.28 E-value=1.2e+02 Score=24.65 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccC--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007881 401 LGRIAADNLFKLD--PNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 401 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
.+..+|..+...+ -.-+..|...+..+...|++++|.++++.-.+++-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3677888777654 5567788889999999999999999999888776544
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.10 E-value=60 Score=26.39 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 007881 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKN---DVSWCSMLVVYVQNYE--EENGCQMFLTARREGVEPKD 212 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 212 (586)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4556777777888888888888876552 2233334444444322 34566777777766654433
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.11 E-value=1.4e+02 Score=25.19 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=64.8
Q ss_pred hcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhH
Q 007881 170 DGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIAGLELGRSVHAVAVKACVEGNIFV 249 (586)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (586)
+.+..+|...-...+.++.+.+.. ++...+.++.. .+|...-...+.++.+.++.+....+. .+. -.++..+
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l---~d~~~~v 128 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KAL---KDEDWFV 128 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHT---TCSSHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHH---hCCCHHH
Confidence 333344444333444444444442 23333333332 245555555566666665543322222 222 2345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 007881 250 GSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMALSSFEEMTS 306 (586)
Q Consensus 250 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (586)
-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+.++.+
T Consensus 129 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 129 RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 66666677776665444444444555666666666677777665 455566666554
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.53 E-value=69 Score=31.14 Aligned_cols=113 Identities=9% Similarity=0.045 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCchHHHHHhccCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCh---hhHHHHHHHHhc
Q 007881 50 SAFDMYSKTGLKDDADKMFDEMPERNL---ATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDL---ITFCAFLNACSD 123 (586)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~ 123 (586)
+.+...+..|+++-+..+++.-..++. ...+ .+...++.|+.+- ++.+.+.|..++. ...+ .+...+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 89 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQT-PLHCAAR 89 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCC-HHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCC-HHHHHHH
Confidence 344555677888888877776444332 2223 3444455566543 3333444544432 2222 2333334
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhcC
Q 007881 124 CSLLQLGRQLHGFLVRSGFDGNVSV--CNGLVDFYGKCNEVGLAKVVFDGI 172 (586)
Q Consensus 124 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~ 172 (586)
.|+.+ +.+.+++.|..++... ..+.+...++.|+.+.+..+++.-
T Consensus 90 ~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 90 IGHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 45554 3344445554443211 112334445566666666666543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.70 E-value=62 Score=28.62 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007881 285 IGGYAHQGHADMALSSFEEMTSMRCEAVP----NYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDL 360 (586)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 360 (586)
++.+....++++|.+++++..+.-.++++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHHH
Confidence 45566667777777776665442112221 1111122222222222222333334444 21 4455556667788
Q ss_pred HHhcCChHHHHHHHHhC
Q 007881 361 LGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 361 ~~~~g~~~~A~~~~~~m 377 (586)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888887553
No 292
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.56 E-value=84 Score=29.55 Aligned_cols=52 Identities=17% Similarity=0.081 Sum_probs=24.0
Q ss_pred HHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHH
Q 007881 51 AFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINL 102 (586)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 102 (586)
.+...+..|..+-+..+++.-..++...-.+.+...+..|+.+-+..+++.-
T Consensus 56 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 56 ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 3444445566666666665544333211122333344455555444444443
No 293
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=41.12 E-value=7.8 Score=23.01 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=11.4
Q ss_pred CCcccee-cccccccCCC
Q 007881 569 NNRFHRF-WDGYCSCSDY 585 (586)
Q Consensus 569 ~~~~h~~-~~g~~~~~~~ 585 (586)
|-.-|.. .+|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 3333443 7899999976
No 294
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=41.01 E-value=1.7e+02 Score=25.03 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=10.1
Q ss_pred HHcCChHHHHHHHHHHHHCCC
Q 007881 188 VQNYEEENGCQMFLTARREGV 208 (586)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~g~ 208 (586)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 344555544444455555443
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.79 E-value=39 Score=30.04 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCChhh-------hHHHHHHHH--hcCCchHHHHHhcc
Q 007881 13 FPCLFKASSALHIPVTGKQLHALALKSGQIHDVFV-------GCSAFDMYS--KTGLKDDADKMFDE 70 (586)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~ 70 (586)
-+.+..+ ++.|+.+..+.+++.+.+.|...+... .+.|..+.. +.|..+-+..+++.
T Consensus 6 ~~~L~~A-~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 6 RPILFDI-VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHH-HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3344444 355788888888888887776655332 233333321 45666555555543
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.99 E-value=1.6e+02 Score=27.26 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCC--HHHHHHHHHHhHHhcCCCCC
Q 007881 281 WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGA--VEKGMKIFYSMTLKYGIKPG 350 (586)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~ 350 (586)
.+.++.-|...|+.++|.+.++++.. .... .......+..+.-+.++ .+....++..+.+. |+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~--p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV--PHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--GGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--Ccch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCH
Confidence 45677888888999999998888854 2111 13344455555555433 34566677777654 44433
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.72 E-value=1.6e+02 Score=24.25 Aligned_cols=49 Identities=10% Similarity=-0.015 Sum_probs=39.1
Q ss_pred HHHHHHHHhcc--CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 007881 402 GRIAADNLFKL--DPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKK 450 (586)
Q Consensus 402 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 450 (586)
+..+|..|... +-.-+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 55677777664 45667788899999999999999999999988876554
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.67 E-value=41 Score=29.83 Aligned_cols=53 Identities=11% Similarity=-0.088 Sum_probs=26.3
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhh-------HHHHHHHHh--cCCChHHHHHHHHHH
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGEPDLIT-------FCAFLNACS--DCSLLQLGRQLHGFL 137 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 137 (586)
..++.|+.+....+++.+...|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455666666666666555555444222 233333332 446665555555443
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.42 E-value=1.6e+02 Score=25.93 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=13.5
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 007881 184 LVVYVQNYEEENGCQMFLTAR 204 (586)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~ 204 (586)
+..+....++++|++++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455666667777777666554
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.16 E-value=2.4e+02 Score=26.16 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=42.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 007881 374 IKEMPMRPT--ISVWGALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLSNMFAATGRWEEADLVRKEMKDV 446 (586)
Q Consensus 374 ~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 446 (586)
|....++|. ..+..+-+..+.+++++..|..+.++++++.|+.. ..+.|.+++..-.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 333356653 34567777789999999999999999999998532 345677777766554
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.15 E-value=1.7e+02 Score=25.04 Aligned_cols=139 Identities=10% Similarity=0.052 Sum_probs=68.0
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCChh--hhHHHHHHHHhcCCchHHHHHhccCCCC---CcccHHHHHHHHHcCCChhH
Q 007881 20 SSALHIPVTGKQLHALALKSGQIHDVF--VGCSAFDMYSKTGLKDDADKMFDEMPER---NLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 94 (586)
.+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+..+++.-..+ +...++.| ...+..|+.+
T Consensus 18 A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~- 91 (237)
T 3b7b_A 18 AAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL-HLAAKKGHYE- 91 (237)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH-HHHHHTTCHH-
T ss_pred HHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHH-
Confidence 34456654 455566666554432 2233455556778888887777754332 32333333 3444556643
Q ss_pred HHHHHHHHHHCC-CCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHH
Q 007881 95 AIDAFINLRRTG-GEPD---LITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS--VCNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 95 A~~~~~~m~~~g-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~ 168 (586)
+++.+.+.| ..++ ..-.+.+. ..+..++.+ +.+.+++.|..++.. ...+.+...++.|+.+-+..+
T Consensus 92 ---~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 92 ---VVQYLLSNGQMDVNCQDDGGWTPMI-WATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp ---HHHHHHTTTCCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred ---HHHHHHhCCCCCcccCCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 444444544 2222 22223333 333445554 444455566554422 112234444556777666666
Q ss_pred HhcC
Q 007881 169 FDGI 172 (586)
Q Consensus 169 ~~~~ 172 (586)
++.-
T Consensus 164 l~~g 167 (237)
T 3b7b_A 164 LAAK 167 (237)
T ss_dssp HTTT
T ss_pred HHcC
Confidence 6544
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.09 E-value=3e+02 Score=26.05 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=18.4
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCCCC
Q 007881 48 GCSAFDMYSKTGLKDDADKMFDEMPERN 75 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 75 (586)
...+|.-|...|+.++|...++++..|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 3456666666777777777777766543
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.09 E-value=1.2e+02 Score=30.50 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCC--CCCh--HHHH-HHHHHHHhcCChHHHHHHHHhC
Q 007881 315 YVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGI--KPGA--EHYA-CVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 315 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~m 377 (586)
...++.+++.|.+.+.+++|..+..... +.. .++. ..|. .+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567777778888888888888877663 110 1111 1222 3445566677788887777664
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.38 E-value=3.7e+02 Score=29.50 Aligned_cols=86 Identities=5% Similarity=-0.215 Sum_probs=51.7
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC----------------
Q 007881 321 VLSACSRAGAVEKGMKIFYSMTLKYGIKPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPT---------------- 382 (586)
Q Consensus 321 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 382 (586)
++..|...|..+-+.++.... +.++..--.+..+|...|++++|.+.|+++ ++.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 566777777777766544322 223333335667788889999999999887 22110
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007881 383 -------ISVWGALLNACRVYGKPELGRIAADNLFKL 412 (586)
Q Consensus 383 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 412 (586)
..-|..++.-+-+++.++.+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 113444555556666666666666666653
No 305
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.77 E-value=2.5e+02 Score=24.87 Aligned_cols=243 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC----hHHHHHHHHHHHHhC
Q 007881 66 KMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL----LQLGRQLHGFLVRSG 141 (586)
Q Consensus 66 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----~~~a~~~~~~~~~~g 141 (586)
.++..+..+|...-...+.++.+.| ...++..+..+.. .|+...-...+.++...+. ......++......
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~- 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN- 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc-
Q ss_pred CCCChhHHHHHHHHHHhcC------ChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHH
Q 007881 142 FDGNVSVCNGLVDFYGKCN------EVGLAKVVFDGIIDKNDVSWCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMI 215 (586)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 215 (586)
.++..+-...+.++.+.+ ...-...+...+..++...-...+.++...|. .+++..+..+.. .++...-
T Consensus 102 -d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 102 -DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHH
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHH
Q 007881 216 SSVLSACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHAD 295 (586)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 295 (586)
...+.++...+.... .....+.+.--.++..+-...+.++.+.|+......+...+..++ .-...+.++.+.|. .
T Consensus 177 ~~a~~aL~~~~~~~~--~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~ 251 (280)
T 1oyz_A 177 NWAAFAININKYDNS--DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-K 251 (280)
T ss_dssp HHHHHHHHHHTCCCH--HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-G
T ss_pred HHHHHHHHhhccCcH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-h
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHhhc
Q 007881 296 MALSSFEEMTSMRCEAVPNYVTLVCVLSACSR 327 (586)
Q Consensus 296 ~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~ 327 (586)
+++..+.++.. .. +|.......+.+..+
T Consensus 252 ~~~~~L~~~l~--~~--~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 252 TLLPVLDTMLY--KF--DDNEIITSAIDKLKR 279 (280)
T ss_dssp GGHHHHHHHHT--TS--SCCHHHHHHHHHHTC
T ss_pred hhhHHHHHHHh--cC--CCcHHHHHHHHHhhc
No 306
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=33.73 E-value=3.3e+02 Score=26.15 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhccCCCCchhHHH
Q 007881 348 KPGAEHYACVVDLLGRAGLVDRAYEIIKEM--PMRPTISVW---GALLNACRVYGKPELGRIAADNLFKLDPNDSGNHVL 422 (586)
Q Consensus 348 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 422 (586)
.|....+..++.+| +.+++.+...+++.. .+..|.... ..|...... ..+.++ ..|-.......
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~--------~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE--------QNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH--------HHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--------HHHHHH--hHhhceeeHHH
Confidence 46666666666664 456777777777765 234455421 111111111 111111 24666667777
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCC
Q 007881 423 LSNMFAATGRWEEADLVRKEMKDVGI 448 (586)
Q Consensus 423 l~~~~~~~g~~~~a~~~~~~m~~~g~ 448 (586)
++..+.- ..++++..+-+|...|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 7776643 68899999999998775
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.09 E-value=1.3e+02 Score=24.89 Aligned_cols=152 Identities=12% Similarity=0.085 Sum_probs=68.2
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCh
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV--CNGLVDFYGKCNEV 162 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~ 162 (586)
..+..|+.+....++..-...--.+|..-.+.+..+ +..|+.+ +.+.+++.|..++... ..+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 345567776655555422100011222233344433 3445554 4445556676554321 12334455677888
Q ss_pred HHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC---CHhHHHHHHHHHhcccCcHHHHHH
Q 007881 163 GLAKVVFDGII----DKNDVSWCSMLVVYVQNYEEENGCQMFLTARREG-VEP---KDFMISSVLSACARIAGLELGRSV 234 (586)
Q Consensus 163 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~~~~a~~~ 234 (586)
+-+..+++.-. .+|...++.+. ..+..|+.+-+ +.+.+.| ..+ |..-.+.+..++........-.++
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHIDNV----KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCSHH-HHHHTTCHHHH----HHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HHHHHHHhccCcccccccCCCCcHHH-HHHHcCCHHHH----HHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 87777774432 12222233333 23445554433 3333333 222 222233344343322223333556
Q ss_pred HHHHHHhCCCCc
Q 007881 235 HAVAVKACVEGN 246 (586)
Q Consensus 235 ~~~~~~~~~~~~ 246 (586)
.+.+++.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 666666665554
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.00 E-value=2.2e+02 Score=24.20 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=38.9
Q ss_pred HHHHHHH---cCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHhCCC
Q 007881 81 AYISNAV---LGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL-----LQLGRQLHGFLVRSGFD 143 (586)
Q Consensus 81 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~ 143 (586)
-+|+++. +..+++.|+-.+-+|.+.| .|....-..++-+.-..|. +..|...++.....|++
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3555554 4588999999999999998 6555544555555544443 33445555555666643
No 309
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=30.99 E-value=98 Score=24.45 Aligned_cols=18 Identities=0% Similarity=-0.049 Sum_probs=9.6
Q ss_pred HHHHhcCChHHHHHHHhc
Q 007881 154 DFYGKCNEVGLAKVVFDG 171 (586)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~ 171 (586)
...++.|+.+-+.-+++.
T Consensus 106 ~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 106 HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhChHHHHHHHHhc
Confidence 334455666655555554
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.65 E-value=1e+02 Score=24.13 Aligned_cols=65 Identities=5% Similarity=0.008 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc--CcHHHHHHHHHHHHhCCCC
Q 007881 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA--GLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~ 245 (586)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.+ ..+....++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456888899999999999999888521111 1223334444554443 2355566666666665443
No 311
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=30.63 E-value=14 Score=22.16 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=9.9
Q ss_pred cccccCCcchhh
Q 007881 542 NLRICGDCHSAF 553 (586)
Q Consensus 542 ~l~~~~~~~~~~ 553 (586)
+.|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998644
No 312
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=29.59 E-value=4.8e+02 Score=26.82 Aligned_cols=377 Identities=9% Similarity=-0.047 Sum_probs=187.7
Q ss_pred hHHHHHHHHhcCCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 007881 48 GCSAFDMYSKTGLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSLL 127 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 127 (586)
-+..+..+.+.+++.....++.. +..+...-.....+....|+..+|......+-..|- ........++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC
Confidence 34456667777888888877766 322333333455666677887777777776655442 2445566677766655544
Q ss_pred HH--HHHHHHHHHHhC-----------CCCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHHc
Q 007881 128 QL--GRQLHGFLVRSG-----------FDGNV-SVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDV---SWCSMLVVYVQN 190 (586)
Q Consensus 128 ~~--a~~~~~~~~~~g-----------~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~ 190 (586)
.. ..+-+..+...| ++++. .....++..+.+ ...+....... .++.. ....-+.-+.+.
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~ 228 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVARQ 228 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc
Confidence 32 222222233222 11111 111222222211 11112222111 11111 111123333333
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHH----HHhcccCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007881 191 YEEENGCQMFLTARREGVEPKDFMISSVLS----ACARIAGLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSIQDA 266 (586)
Q Consensus 191 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 266 (586)
+.+.|..+|....... ..+......+-. .....+...++...+........ +.....-.+..-.+.|+++.|
T Consensus 229 -d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 -DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp -CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred -CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 7789999998886543 233333322222 22333424455555555444332 333344444555677999999
Q ss_pred HHHHhhCCCC--CeeH-HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007881 267 EIAFNKMPER--NLVC-WNAIIGGYAHQGHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTL 343 (586)
Q Consensus 267 ~~~~~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 343 (586)
...|+.|... +..- .-=+..++...|+.++|..+|+.+.. . . +|-.++.+ .+.|..-. . .
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~----~--~fYg~lAa-~~Lg~~~~-------~-~ 367 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q----R--GFYPMVAA-QRIGEEYE-------L-K 367 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S----C--SHHHHHHH-HHTTCCCC-------C-C
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C----C--ChHHHHHH-HHcCCCCC-------C-C
Confidence 9999999863 2222 22245567788999999999999865 2 1 33333321 22221100 0 0
Q ss_pred hcCCCCC---h-H--HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC---
Q 007881 344 KYGIKPG---A-E--HYACVVDLLGRAGLVDRAYEIIKEMPMRPTISVWGALLNACRVYGKPELGRIAADNLFKLDP--- 414 (586)
Q Consensus 344 ~~~~~p~---~-~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p--- 414 (586)
...+.+. . . .-..-+..+...|...+|...+.......+......+.......|..+.+.....+....+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~ 447 (618)
T 1qsa_A 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEE 447 (618)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhh
Confidence 0000110 0 0 11223456778899999988777662233444444444445667788877766654433220
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccC
Q 007881 415 NDSGNHVLLSNMFAATGRWEEADLVRKEMKDVGIKKG 451 (586)
Q Consensus 415 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 451 (586)
.-+..|..++.-+++.-.++...-.---..+.+..|.
T Consensus 448 ~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 448 RFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred hCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 0122344555555555555554433333445555554
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.70 E-value=2.7e+02 Score=23.65 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=19.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 007881 390 LNACRVYGKPELGRIAADNLFKLDPNDSGNHVLLS 424 (586)
Q Consensus 390 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 424 (586)
+..|.+.|.+++|.+++++.....+.+...-.-|.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34477777777777777777766655444433333
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.53 E-value=1.1e+02 Score=24.50 Aligned_cols=36 Identities=6% Similarity=-0.084 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007881 126 LLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 126 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
..-.|.++++.+.+.+...+..|.---++.+.+.|-
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 333455555555444433333333334444444443
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.84 E-value=2e+02 Score=24.47 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=10.3
Q ss_pred HHHHHhcCCchHHHHHhcc
Q 007881 52 FDMYSKTGLKDDADKMFDE 70 (586)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~ 70 (586)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444455666666655554
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.49 E-value=58 Score=24.01 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCchHHHHHhccCCCCCcccHHHHHHHHHcCCChhHH
Q 007881 59 GLKDDADKMFDEMPERNLATWNAYISNAVLGGRPKNA 95 (586)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 95 (586)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888766765544
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.44 E-value=4.2e+02 Score=26.10 Aligned_cols=139 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 007881 32 LHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPKNAIDAFINLRRTGGE 108 (586)
Q Consensus 32 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 108 (586)
..+...+.|++--...|..-.+.+...|++++|.++--.-+. |+..|.+.+-..=...|+..--+..|..+.+.| +
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~ 426 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 007881 109 PDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEVGLAKVVFDGIIDKNDVS 179 (586)
Q Consensus 109 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 179 (586)
.|..-=.-+.+.....|+.+..++. +.+..+..+...-..+ +..+..-|..+|.+...++-+.
T Consensus 427 Ln~~ESlEl~r~vL~q~r~~llekW---l~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~~~~Kvi 489 (494)
T 1bpo_A 427 LNKYESLELCRPVLQQGRKQLLEKW---LKEDKLECSEELGDLV-----KSVDPTLALSVYLRANVPNKVI 489 (494)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHH---HHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHCCCCC--
T ss_pred cchHHhhHHhHHHHhccHHHHHHHH---HhcCCccccHHhHhhh-----hhcCHHHHHHHHHHcCCcHHHH
No 318
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=26.43 E-value=50 Score=23.87 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHHHHHHHcCcccCCccccccchhhhhhhhhhHHHHHHHHHhcc
Q 007881 474 ERNTEIQAMLTKLREEMKAAGYIPDTNFALYDVEEEEKMTEVGHHSEKIALAFGL 528 (586)
Q Consensus 474 ~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 528 (586)
+...++...+++...+++..|+.||...+-. +..-+.++.+...||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 4556778888899999999999999655421 2234456666667764
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.95 E-value=1.3e+02 Score=24.34 Aligned_cols=65 Identities=5% Similarity=0.008 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccc--CcHHHHHHHHHHHHhCCCC
Q 007881 180 WCSMLVVYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARIA--GLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~ 245 (586)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.+ ..+....++..+.+.++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 467888999999999999999888521111 1223334444554432 2345566666666655443
No 320
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.37 E-value=4e+02 Score=24.55 Aligned_cols=129 Identities=13% Similarity=0.105 Sum_probs=74.9
Q ss_pred CChhHHHHHHHHHHHC-C----CCCChhhHHHHH---HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007881 90 GRPKNAIDAFINLRRT-G----GEPDLITFCAFL---NACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNE 161 (586)
Q Consensus 90 g~~~~A~~~~~~m~~~-g----~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 161 (586)
-+.++|+.+|..+... + ..|+.......+ ..+.+.-+ -+++..+.+.|+.|..++..-++..+++.=.
T Consensus 163 ~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 163 MSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp SCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 3567899999888653 2 334433222222 22222112 3577888889999999999999999998888
Q ss_pred hHHHHHHHhcCCC--CChhhHHH--HHH----HHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007881 162 VGLAKVVFDGIID--KNDVSWCS--MLV----VYVQNYEEENGCQMFLTARREGVEPKDFMISSVLSACARI 225 (586)
Q Consensus 162 ~~~A~~~~~~~~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 225 (586)
++.+.+++|.+.. +....+-+ ++. ...+..++++.+.+++.... ..+......++.-....
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhC
Confidence 9999999987732 22222221 111 12234467777777765321 12344555555443333
No 321
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=25.35 E-value=22 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.7
Q ss_pred ceEEEecCCccceecccccccCC
Q 007881 562 REVIVRDNNRFHRFWDGYCSCSD 584 (586)
Q Consensus 562 ~~~~~~~~~~~h~~~~g~~~~~~ 584 (586)
..|-+.|.+..|+|+||+-+-.|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 46778899999999999976443
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.76 E-value=2e+02 Score=24.52 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=82.9
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCChh--hhHHHHHHHHhcCCchHHHHHhccCC-C---CCcccHHHHHHHHHcCCChhH
Q 007881 21 SALHIPVTGKQLHALALKSGQIHDVF--VGCSAFDMYSKTGLKDDADKMFDEMP-E---RNLATWNAYISNAVLGGRPKN 94 (586)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~ 94 (586)
+..|+.+ +.+.+++.|..++.. ...+.+...+..|+.+-+..+++.-+ . ++..-++.|. ..++.|+.
T Consensus 52 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~-- 124 (237)
T 3b7b_A 52 AENNHLE----AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI-WATEYKHV-- 124 (237)
T ss_dssp HHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHH-HHHHTTCH--
T ss_pred HHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHH-HHHHcCCH--
Confidence 3455554 445555666554332 22344555667888888888887642 2 2333334443 44455664
Q ss_pred HHHHHHHHHHCCCCCChhh--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHh
Q 007881 95 AIDAFINLRRTGGEPDLIT--FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV--CNGLVDFYGKCNEVGLAKVVFD 170 (586)
Q Consensus 95 A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~ 170 (586)
++++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+.-+++
T Consensus 125 --~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (237)
T 3b7b_A 125 --DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS 198 (237)
T ss_dssp --HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred --HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence 35555566676554321 112233333445544 4455566665554321 1233444556666666655555
Q ss_pred cCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007881 171 GIIDKN---DVSWCSMLVVYVQNYEEENGCQMFLTARR 205 (586)
Q Consensus 171 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (586)
.-...+ ..-.+. +...+..|+...++++.+.+++
T Consensus 199 ~gad~~~~d~~g~t~-l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 199 RDSDVTLKNKEGETP-LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCCTTCCCTTSCCH-HHHSCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCccCCCCCCH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 432221 111111 2222344555555555555443
No 323
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.31 E-value=3.2e+02 Score=23.02 Aligned_cols=144 Identities=8% Similarity=-0.005 Sum_probs=69.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCChhhhHHHHHHHHhcCCchHHHHHhccCCC---CCcccHHHHHHHHHcCCChh
Q 007881 17 FKASSALHIPVTGKQLHALALKSGQIHDVFVGCSAFDMYSKTGLKDDADKMFDEMPE---RNLATWNAYISNAVLGGRPK 93 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 93 (586)
|...+..|+++..+.++..-...-..++..-.+ .+...++.|+.+-...+++.-.. +|..-++.|. ..+..|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH-IAASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHH-HHHHcCHHH
Confidence 445556778877776665422111122333333 44455677888877777765433 2333344443 334445543
Q ss_pred HHHHHHHHHHHCCCCCChh---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHH
Q 007881 94 NAIDAFINLRRTGGEPDLI---TFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSV--CNGLVDFYGKCNEVGLAKVV 168 (586)
Q Consensus 94 ~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~ 168 (586)
+++.+.+.|..++.. -.+.+ ...+..++.+- .+.+++.|..++... ..+.+...++.|+.+-+..+
T Consensus 88 ----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 88 ----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEI----AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 445555566554432 22233 33334455543 334445555443221 12233444455666655555
Q ss_pred Hhc
Q 007881 169 FDG 171 (586)
Q Consensus 169 ~~~ 171 (586)
++.
T Consensus 159 l~~ 161 (231)
T 3aji_A 159 LFY 161 (231)
T ss_dssp HHT
T ss_pred Hhc
Confidence 543
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.31 E-value=4.5e+02 Score=24.41 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCC
Q 007881 150 NGLVDFYGKCNEVGLAKVVFDGIIDKND---VSWCSMLVVYVQNY-EEENGCQMFLTARREGVEP 210 (586)
Q Consensus 150 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p 210 (586)
..++.=|...|+.++|.+.++++..|.- +....+..++-+.. ..+.+..++..+.+.|+-+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4566777777888888888887765531 11222222222211 1234456666666655433
No 325
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.49 E-value=4.5e+02 Score=25.03 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcC
Q 007881 85 NAVLGGRPKNAIDAFINLRRTGGEPDLIT--FCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVS--VCNGLVDFYGKCN 160 (586)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g 160 (586)
..+..|+.+ +++.+.+.|..|+... ..+.|...+..|+.+-++ .+++.|..++.. ...+.+...++.|
T Consensus 20 ~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 20 VASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 344455543 3444445565554321 122333333445544333 333444433221 1112333344555
Q ss_pred ChHHHHHHHhc
Q 007881 161 EVGLAKVVFDG 171 (586)
Q Consensus 161 ~~~~A~~~~~~ 171 (586)
+.+-+.-+++.
T Consensus 92 ~~~~v~~Ll~~ 102 (437)
T 1n11_A 92 HTNMVKLLLEN 102 (437)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhC
Confidence 55555555544
No 326
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.36 E-value=2.9e+02 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.037 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCchHHHHH
Q 007881 48 GCSAFDMYSKTGLKDDADKM 67 (586)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~ 67 (586)
..+.+...+..|+.++..++
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~ 34 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGS 34 (285)
T ss_dssp --------------------
T ss_pred HHHHHHHHhhcCCCCCcccC
Confidence 34455555566666555553
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.22 E-value=1.4e+02 Score=23.90 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=28.8
Q ss_pred HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007881 102 LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRSGFDGNVSVCNGLVDFYGKCNEV 162 (586)
Q Consensus 102 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 162 (586)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445555543322 233334444444455666666666655444444444445556665543
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.05 E-value=1.3e+02 Score=23.48 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 007881 82 YISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL 126 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 126 (586)
++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555555566677777777666555555555555555554443
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.81 E-value=3.4e+02 Score=23.33 Aligned_cols=66 Identities=23% Similarity=0.372 Sum_probs=42.2
Q ss_pred cHHHHHHHHH---cCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHhCCC
Q 007881 78 TWNAYISNAV---LGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDCSL-----LQLGRQLHGFLVRSGFD 143 (586)
Q Consensus 78 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~ 143 (586)
..--+|+++. +..+++.|+-.+-+|++.|-.|....-..++-+.-..|. +..|...++.....|++
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3334566665 458999999999999998877665555555555444332 34455555555666643
No 330
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.38 E-value=84 Score=27.65 Aligned_cols=53 Identities=6% Similarity=-0.135 Sum_probs=30.4
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhCCCCCh-------hhhHHHHHHHHhc---CCchHHHHHhcc
Q 007881 17 FKASSALHIPVTGKQLHALALKSGQIHDV-------FVGCSAFDMYSKT---GLKDDADKMFDE 70 (586)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~---g~~~~A~~~~~~ 70 (586)
|...+..|+.+..+.+.+.+++.|..++. .-.+.| ...+.. |+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhc
Confidence 33345567888777888888887765543 223333 333344 666655555543
No 331
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.23 E-value=1.2e+02 Score=24.87 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=38.8
Q ss_pred hHHHHHHHH-HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCCh
Q 007881 93 KNAIDAFIN-LRRTGGEPDLITFCAFLNACSDCSLLQLGRQLHGFLVRS--GFDGNVSVCNGLVDFYGKCNEV 162 (586)
Q Consensus 93 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~ 162 (586)
+.+++-+.+ +++.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.---++.+.+.|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444433 35566665443 344455555555666677777777766 5444544444455666666654
No 332
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.91 E-value=2.5e+02 Score=25.91 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 007881 149 CNGLVDFYGKCNEVGLAKVVFDGIIDKN---DVSWCSMLVVYVQNYE--EENGCQMFLTARREGVEPK 211 (586)
Q Consensus 149 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 211 (586)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4567777777788888888888876552 1223333344433322 3445567777766665443
No 333
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.90 E-value=3.9e+02 Score=22.76 Aligned_cols=57 Identities=7% Similarity=-0.097 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhcCCCCC
Q 007881 292 GHADMALSSFEEMTSMRCEAVPNYVTLVCVLSACSRAGAVEKGMKIFYSMTLKYGIKPG 350 (586)
Q Consensus 292 g~~~~A~~~~~~m~~~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 350 (586)
+...++.++|..|...+.|.. -..-|......+...|++++|.++|+.-++. +-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTK-LSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 345677777777777444421 2445566666666777777777777776654 55553
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.86 E-value=1e+02 Score=22.64 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=27.0
Q ss_pred CCHHHHHHHHhhCCCCCeeHHHHHHHHHHhcCCHHHH
Q 007881 261 GSIQDAEIAFNKMPERNLVCWNAIIGGYAHQGHADMA 297 (586)
Q Consensus 261 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 297 (586)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4577788888888777777888888887766665544
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.85 E-value=1.1e+02 Score=24.21 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=20.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 007881 82 YISNAVLGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACSDC 124 (586)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 124 (586)
++..+...+.+-.|.++++.+.+.+...+..|.-..|..+...
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3444444444555555555555555444444444444443333
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.76 E-value=3e+02 Score=21.41 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007881 201 LTARREGVEPKDFMISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCG 261 (586)
Q Consensus 201 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (586)
+.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-++.+...|
T Consensus 7 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 337
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.73 E-value=84 Score=20.72 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 007881 92 PKNAIDAFINLRRTGGEPDLITFCAFLNAC 121 (586)
Q Consensus 92 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 121 (586)
.++|.+.|.+|++..-.+...||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467888888886654445667888877776
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.71 E-value=3.2e+02 Score=21.74 Aligned_cols=62 Identities=6% Similarity=0.016 Sum_probs=43.2
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccc-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007881 201 LTARREGVEPKDFMISSVLSACARIA-GLELGRSVHAVAVKACVEGNIFVGSALVDMYGKCGSI 263 (586)
Q Consensus 201 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (586)
+.|.+.|++++..= ..++..+...+ ..-.|.+++..+.+.++..+..|..--++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34667788776543 34556666665 6778999999999888777766655566777777643
No 339
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.55 E-value=2.1e+02 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007881 351 AEHYACVVDLLGRAGLVDRAYEIIKEM 377 (586)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~m 377 (586)
...+|.+++.|...+.++.|..++.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 445566666666666666666666665
No 340
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.49 E-value=2.5e+02 Score=23.85 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHH---cCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 007881 82 YISNAV---LGGRPKNAIDAFINLRRTGGEPDLITFCAFLNACS 122 (586)
Q Consensus 82 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 122 (586)
+|+++. +..+++.|+-.+-+|++.|-.|....-..++-+.-
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 455554 45889999999999999887665544444444443
No 341
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.30 E-value=3e+02 Score=23.30 Aligned_cols=47 Identities=6% Similarity=-0.075 Sum_probs=24.0
Q ss_pred HHHHHHHCCCCCCHhH--HHHHHHHHhcccCcHHHHHHHHHHHHhCCCC
Q 007881 199 MFLTARREGVEPKDFM--ISSVLSACARIAGLELGRSVHAVAVKACVEG 245 (586)
Q Consensus 199 ~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (586)
+++.+.+.|..++... -.+.+...+..|+.+.+..+.+.+.+.|..+
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3344445565543221 1123444455667666666666666666543
No 342
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=20.25 E-value=24 Score=18.03 Aligned_cols=13 Identities=38% Similarity=1.433 Sum_probs=8.4
Q ss_pred eeccccc--ccCCCC
Q 007881 574 RFWDGYC--SCSDYW 586 (586)
Q Consensus 574 ~~~~g~~--~~~~~~ 586 (586)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777777 465554
Done!