BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007882
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 222 bits (565), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 157/483 (32%), Positives = 246/483 (50%), Gaps = 43/483 (8%)
Query: 94 DVVVLKERNFSDVIENNK---FVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DV+ L + NF I + ++VEF+APWCGH + T LK V LAK
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI---VPLAK 58
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHK-AYNGGRTKDAIVTWIKKKIGPGIYNITTL 209
VD T ++Y V G+PT+ F DG+ AY+G RT D IV+ +KK+ GP + T
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTE 118
Query: 210 DEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSK- 267
+E ++ ++ + ++G+ + S + SE L AS L D+ F T + + + +
Sbjct: 119 EEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEG 178
Query: 268 --VNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN 325
+ RP+ + K E + ++Y + K I F+ N + T +N + I+
Sbjct: 179 IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDN-----KDLIQG 233
Query: 326 QLLLFAVSN-DSEKLLPVFEEAAKSFKGKLIFV------------YVQMDNEDVGKPVSE 372
+ LL A + D EK + + ++ +++ V + + +S+
Sbjct: 234 KDLLIAYYDVDYEKNA----KGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSD 289
Query: 373 YFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPFFKSDPI 427
FG+ GE P V T +K ++ E + D ++ F +D+ +G LK + KS+PI
Sbjct: 290 -FGLESTAGEIPVVAIRTAK--GEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPI 346
Query: 428 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 487
PE+NDG VK+VV NFDEIV +E+KDVL+E YAPWCGHC+ EP Y +L + L +IV
Sbjct: 347 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIV 406
Query: 488 IAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 546
IAKMD T N+ + GFPTI F PA NK +P + R + +L++ A+ P
Sbjct: 407 IAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREATNPPV 465
Query: 547 IQK 549
IQ+
Sbjct: 466 IQE 468
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 88 PEIDDKDVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESV 146
PE +D V V+ NF +++ N NK V++EFYAPWCGHC+ +L S + ++
Sbjct: 347 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL-SKDPNI 405
Query: 147 VLAKVDATEENELAHEYDVQGFPTIYFFVDGQH---KAYNGGRTKDAIVTWIKKK 198
V+AK+DAT N++ Y+V+GFPTIYF + K Y GGR +++++++
Sbjct: 406 VIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 459
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 196/352 (55%), Gaps = 16/352 (4%)
Query: 200 GPGIYNITTLDE---AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNP 256
GPG TTL + AE ++ S V+G+ + ++ A+ DD+ F T+N
Sbjct: 13 GPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNS 72
Query: 257 DVAKIFHLDSKVNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAP 316
DV + LD + +V+ KK E + F+G+ K + DF+ N+LPLV FT + AP
Sbjct: 73 DVFSKYQLD----KDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAP 128
Query: 317 SVFESPIKNQLLLF---AVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY 373
+F IK +LLF +VS D + L F+ AA+SFKGK++F+++ D+ D + + E+
Sbjct: 129 KIFGGEIKTHILLFLPKSVS-DYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEF 186
Query: 374 FGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETN 431
FG+ E P V T ++ K+ + E LT ++I F FLEGK+KP S +PE
Sbjct: 187 FGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDW 246
Query: 432 DGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 490
D VK++VG NF+++ DE K+V +E YAPWCGHC+ P ++KL + + ++IVIAK
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 306
Query: 491 MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 542
MD T NE K FPT+ FFPA I+ + +RT+ KFL+
Sbjct: 307 MDSTANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLESGGQ 357
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 91 DDKDVVVLKERNFSDV-IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLA 149
D + V VL +NF DV + K V VEFYAPWCGHC+ K +E++V+A
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD-HENIVIA 305
Query: 150 KVDATEENELAHEYDVQGFPTIYFFVDGQHKA---YNGGRTKDAIVTWIK 196
K+D+T NE+ V FPT+ FF + YNG RT D +++
Sbjct: 306 KMDST-ANEV-EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 353
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 227/493 (46%), Gaps = 80/493 (16%)
Query: 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
+D VV L +F++ I+++ V+ EF+APWCGHC+ L N + LA+
Sbjct: 12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQ 69
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKDAIVTWIKKKIGPGIYNIT 207
+D TE +L E+++ GFP++ F + Y G RT +AIV ++ K+ P + +
Sbjct: 70 IDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVA 129
Query: 208 TLDEAERVLTSETKVVLGYLNSLVGSESEVLAD--------ASRLEDDVNFYQTTNPD-- 257
L L +ET ++ ++ ++ AD A++ +D +F N D
Sbjct: 130 DL---PAYLANET-----FVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDD 181
Query: 258 VAKIFHLDSKVNRPALVMVKK-------------ETEKISYFDGKFDKSTIADFVFSNKL 304
+L S ++ P + KK + E + YF G+ D S A +V S L
Sbjct: 182 FKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYF-GEIDGSVFAQYVESG-L 239
Query: 305 PLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKL---LPVFEEAAKSFKGKLIFVYVQM 361
PL +F ND E+L P+F E AK +G + FV +
Sbjct: 240 PLGYLFY----------------------NDEEELEEYKPLFTELAKKNRGLMNFV--SI 275
Query: 362 DNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI----------LDGELTLDK--IKTF 409
D G+ + + P + +D K + L ++ L+ I++
Sbjct: 276 DARKFGRHAGN-LNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESL 334
Query: 410 GEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAF 469
+DFL+G P KS I E D V +VG N DEIV D KDVL+ YAPWCGHC+
Sbjct: 335 VKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRL 394
Query: 470 EPTYNKLA-KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDR 528
PTY +LA + ++IAK+D T N+ +G+PTI+ +P G KS + + R
Sbjct: 395 APTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKS-ESVVYQGSR 453
Query: 529 TVVALYKFLKKNA 541
++ +L+ F+K+N
Sbjct: 454 SLDSLFDFIKENG 466
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 414 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY 473
+G LK + KS+PIPE+NDG VK+VV NFDEIV +E+KDVL+E YAPWCGHC+ EP Y
Sbjct: 8 FDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKY 67
Query: 474 NKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 532
+L + L +IVIAKMD T N+ + GFPTI F PA NK +P + R +
Sbjct: 68 KELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSD 126
Query: 533 LYKFLKKNAS 542
+L++ A+
Sbjct: 127 FISYLQREAT 136
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 88 PEIDDKDVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESV 146
PE +D V V+ NF +++ N NK V++EFYAPWCGHC+ +L S + ++
Sbjct: 22 PESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL-SKDPNI 80
Query: 147 VLAKVDATEENELAHEYDVQGFPTIYFFVDGQH---KAYNGGRTKDAIVTWIKKKIGPG 202
V+AK+DAT N++ Y+V+GFPTIYF + K Y GGR +++++++ G
Sbjct: 81 VIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATSG 138
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 88 PEIDDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVV 147
PE +D V+VL++ NF++ + +K+++VEFYAPWCGHC+ +LK+ +
Sbjct: 3 PEEEDH-VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIR 61
Query: 148 LAKVDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKDAIVTWIKKKIGPG 202
LAKVDATEE++LA +Y V+G+PTI FF +G K Y GR D IV W+KK+ GP
Sbjct: 62 LAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 428 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-I 486
PE D V ++ +NF E L K +L+E YAPWCGHC+A P Y K A L+ S I
Sbjct: 3 PEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 487 VIAKMDGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 540
+AK+D T ++ + G+PTI FF G+ + P R + +LKK
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKKR 115
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 431 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 490
+ G VK+VVG FD IV+D KDVL+E YAPWCGHC+ EP Y L K +G +VIAK
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64
Query: 491 MDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNASIPFKI 547
MD T N+ + + K +GFPTI F P+G+K +PI + +R + L KF+ ++A+ +
Sbjct: 65 MDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKRSRT 123
Query: 548 QKPTSAPKT 556
++ S P +
Sbjct: 124 KEELSGPSS 132
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V++ K V++EFYAPWCGHC+ + K + +V+AK+DAT + +Y V
Sbjct: 21 VMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK-GQKDLVIAKMDATANDITNDQYKV 79
Query: 166 QGFPTIYFFVDGQHK 180
+GFPTIYF G K
Sbjct: 80 EGFPTIYFAPSGDKK 94
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 119/218 (54%), Gaps = 11/218 (5%)
Query: 212 AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRP 271
AE ++ S V+G+ + ++ A+ DD+ F T+N DV + LD +
Sbjct: 17 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KD 72
Query: 272 ALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF- 330
+V+ KK E + F+G+ K + DF+ N+LPLV FT + AP +F IK +LLF
Sbjct: 73 GVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 132
Query: 331 --AVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG-EAPKVLAYT 387
+VS D + L F+ AA+SFKGK++F+++ D+ D + + E+FG+ E P V T
Sbjct: 133 PKSVS-DYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLIT 190
Query: 388 GNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKS 424
++ K+ + ELT ++I F FLEGK+KP S
Sbjct: 191 LEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS 228
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 428 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---D 484
P ++G V +VV N++EIVLD++KDVL+E YAPWCGHC+A P Y +L D
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 485 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 541
+VIAK+D T N+ + GFPTI +PAG K P+ RTV L KF+ +N
Sbjct: 62 RVVIAKVDATANDVPD-EIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENG 116
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 95 VVVLKERNFSD-VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSA--NESVVLAKV 151
V V+ +N+++ V+++ K V++EFYAPWCGHC+ + + VV+AKV
Sbjct: 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 152 DATEENELAHEYDVQGFPTIYFF---VDGQHKAYNGGRTKDAIVTWI 195
DAT N++ E +QGFPTI + GQ Y+G RT + ++ +I
Sbjct: 69 DAT-ANDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI 112
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 431 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 490
+ G VK++VG NF+++ DE K+V +E YAPWCGHC+ P ++KL + + ++IVIAK
Sbjct: 5 SSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 64
Query: 491 MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 538
MD T NE K FPT+ FFPA I+ + +RT+ KFL+
Sbjct: 65 MDSTANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLE 111
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 95 VVVLKERNFSDV-IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
V VL +NF DV + K V VEFYAPWCGHC+ K +E++V+AK+D+
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD-HENIVIAKMDS 67
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKA---YNGGRTKDAI 191
T NE+ V FPT+ FF + YNG RT D
Sbjct: 68 T-ANEV-EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGF 106
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+ L + NF DV+ N ++VEFYAPWCGHC+ EL + + LAKVDAT
Sbjct: 9 TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPG 202
E+ +LA +DV G+PT+ F G+ YNG R K IV ++ ++ G G
Sbjct: 69 EQTDLAKRFDVSGYPTLKIFRKGRPFDYNGPREKYGIVDYMIEQSGSG 116
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGT--TNE 497
+NFD++V + + +L+E YAPWCGHC+ P Y K AK L + I +AK+D T T+
Sbjct: 15 DNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 73
Query: 498 HHRAKSDGFPTILFFPAGNKSFD 520
R G+PT+ F G + FD
Sbjct: 74 AKRFDVSGYPTLKIFRKG-RPFD 95
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
+VL + NF +V+ + ++VEFYAPWCGHC+ EL + + LAKVDAT
Sbjct: 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 156 ENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
E +LA +DV G+PT+ F G+ YNG R K IV ++ ++ G
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSG 237
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+VL + NF + + + V++EFYAPWCGHC+ LK + + +AK+DAT
Sbjct: 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAER 214
+ LA +DV G+PTI GQ Y G RT++ IV +++ P + T E
Sbjct: 77 SASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQP---DWTPPPEVTL 133
Query: 215 VLTSE 219
VLT E
Sbjct: 134 VLTKE 138
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 420 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 479
P D + + V ++ NFD V D+ VLLE YAPWCGHC+ F P Y K+A
Sbjct: 2 PLGSEDDLEVKEENGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANI 60
Query: 480 LRGVD-SIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 516
L+ D I +AK+D T+ ++ D G+PTI G
Sbjct: 61 LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ 100
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 437 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGT- 494
++ NFDE+V D + +L+E YAPWCGHC+ P Y K AK L + I +AK+D T
Sbjct: 134 VLTKENFDEVVND-ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 495 -TNEHHRAKSDGFPTILFFPAGN 516
T+ R G+PT+ F G
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKGR 215
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V VL + NF + + + V++EFYAPWCGHC+ + LK + + +AK+DAT
Sbjct: 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT 78
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGP 201
+ LA ++DV G+PTI GQ Y+G RT++ IV +++ P
Sbjct: 79 SASMLASKFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVREVSQP 125
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDG 493
V ++ NFD V D+ VLLE YAPWCGHC+ F P Y K+A L+ D I +AK+D
Sbjct: 19 VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 77
Query: 494 TTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRT 529
T+ +K D G+PTI G ++ D RT
Sbjct: 78 TSASMLASKFDVSGYPTIKILKKGQA----VDYDGSRT 111
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 94 DVVVLKERNFSDVIENNK---FVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DV+ L + NF I + ++VEF+APWCGHC+ T LK V LAK
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI---VPLAK 58
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHK-AYNGGRTKDAIVTWIKKKIGP 201
VD T ++Y V G+PT+ F DG+ AY+G RT D IV+ +KK+ GP
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 434 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 491
DV + +NF+ + D +L+E +APWCGHC+ P Y A L+G+ + +AK+
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 492 DGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 542
D T TN ++ G+PT+ F G ++ D RT + LKK A
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAG---AYDGPRTADGIVSHLKKQAG 109
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 302 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYV 359
N+LPLV FT + AP +F IK +LLF +D + L F+ AA+SFKGK++F ++
Sbjct: 11 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 360 QMDNEDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGK 417
D+ D + + E+FG+ E P V T ++ K+ + ELT ++I F FLEGK
Sbjct: 71 DSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 129
Query: 418 LKPFFKSDPIPETND 432
+KP S +PE D
Sbjct: 130 IKPHLMSQELPEDWD 144
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 94 DVVVLKERNFS-DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANES-VVLAKV 151
DV+ L + +F +V+++ MVEFYAPWCGHC+ +E+K + V LA V
Sbjct: 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAIVT 193
DAT LA Y ++GFPTI F G+ Y+GGRT+ IV+
Sbjct: 68 DATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 110
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 433 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAK 490
GDV + ++FD+ VLD ++E YAPWCGHC+ EP + A ++ + +A
Sbjct: 7 GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA 66
Query: 491 MDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 529
+D T N+ R GFPTI F G P++ D RT
Sbjct: 67 VDATVNQVLASRYGIRGFPTIKIFQKGES---PVDYDGGRT 104
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 78.6 bits (192), Expect = 9e-15, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 94 DVVVLKERNFS-DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVD 152
DV+ L NF+ +VI+++ +VEFYAPWCGHCQ T LK + V + V+
Sbjct: 18 DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK---DVVKVGAVN 74
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQHKA--YNGGRTKDAIV 192
A + L +Y VQGFPTI F ++K Y GGRT +AIV
Sbjct: 75 ADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 430 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 489
++ DV + +NF+ V+ L+E YAPWCGHCQ P + K A L+ V +
Sbjct: 14 SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAV 73
Query: 490 KMDGTTNEHHRAKSDGFPTILFFPAG-NKSFD 520
D + + GFPTI F A NK D
Sbjct: 74 NADKHQSLGGQYGVQGFPTIKIFGANKNKPED 105
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L E NF D I ++FYAPWCGHC+ + V +A+VD T
Sbjct: 2 VLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 155 EENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAI 191
E + +Y V+G+PT+ F G+ + ++GGR D++
Sbjct: 61 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 98
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 499
NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA++D T +
Sbjct: 8 NNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 65
Query: 500 RAKSD--GFPTILFFPAGNK 517
+K G+PT+L F G K
Sbjct: 66 CSKYSVRGYPTLLLFRGGKK 85
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L E NF D I ++FYAPWCGHC+ + V +A+VD T
Sbjct: 7 VLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 65
Query: 155 EENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAI 191
E + +Y V+G+PT+ F G+ ++GGR D++
Sbjct: 66 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 103
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 499
NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA++D T +
Sbjct: 13 NNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 70
Query: 500 RAKSD--GFPTILFFPAGNK 517
+K G+PT+L F G K
Sbjct: 71 CSKYSVRGYPTLLLFRGGKK 90
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L E NF D I ++FYAPWCGHC+ + V +A+VD T
Sbjct: 9 VLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 67
Query: 155 EENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAI 191
E + +Y V+G+PT+ F G+ ++GGR D++
Sbjct: 68 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 105
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 431 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIA 489
+ G V + NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA
Sbjct: 5 SSGTVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 62
Query: 490 KMDGTTNEHHRAKSD--GFPTILFFPAGNK 517
++D T + +K G+PT+L F G K
Sbjct: 63 EVDCTAERNICSKYSVRGYPTLLLFRGGKK 92
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 136/350 (38%), Gaps = 28/350 (8%)
Query: 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKS--ANES-VVLAK 150
++ L N +++ N +V FYA WC Q +K NE+ VV A+
Sbjct: 6 EITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFAR 65
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQH--KAYNGGRTKDAIVTWIKKKIGPGIYNITT 208
VD + +++A Y + +PT+ F +G + Y G R+ A+ +I+++ I I
Sbjct: 66 VDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRD 125
Query: 209 LDEAERVLTSETKVVLGYLNSLVGSESEVLAD-ASRLEDDVNFYQTTNPDVAK--IFHLD 265
L E L + ++GY V A+ L DD F DV+K + D
Sbjct: 126 LAEIT-TLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFG-DVSKPERYSGD 183
Query: 266 SKVNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN 325
+ + +P Y + +++ +PLV T EN + E +
Sbjct: 184 NIIYKPP----GHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPF 239
Query: 326 QLLLFAVSNDSEKLLPVFEEAAKSF---KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 382
L+LF D+E L E A+ KG + F++ D P+ + P
Sbjct: 240 -LILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDK--FRHPLLHIQKTPADCPV 296
Query: 383 VLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIP 428
+ D + + G+ L K+K F D GKL F P P
Sbjct: 297 IAI----DSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDP 342
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR----GVDSIVIAKMDGTTNE 497
N DEI L+ + L+ YA WC Q P + + + ++ + +V A++D ++
Sbjct: 14 NIDEI-LNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVD--CDQ 70
Query: 498 H----HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 546
H R + +PT+ F G R+V AL ++++ S P +
Sbjct: 71 HSDIAQRYRISKYPTLKLFRNGXXX--KREYRGQRSVKALADYIRQQKSDPIQ 121
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANE-----SVVL 148
+V V+ + N+ +++E + M+EFYAPWC CQ E +S E V +
Sbjct: 8 NVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQ-------PEWESFAEWGEDLEVNI 58
Query: 149 AKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198
AKVD TE+ L+ + + PTIY DG+ + Y G RTK + +I K
Sbjct: 59 AKVDVTEQPGLSGRFIINALPTIYHCKDGEFRRYQGPRTKKDFINFISDK 108
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 431 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 490
+ G+V+++ N+ E++ D ++E YAPWC CQ +P + A+ ++ + IAK
Sbjct: 5 SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VNIAK 60
Query: 491 MDGT 494
+D T
Sbjct: 61 VDVT 64
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 421 FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 480
F+ SDP + + +FD+ + + + L+E YAPWCGHC+ T+ K AK L
Sbjct: 12 FYDSDP-------HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64
Query: 481 RGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFF 512
GV + D N+ AK D GFPT++ F
Sbjct: 65 DGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 20/150 (13%)
Query: 92 DKDVVVLKERNFSDVIENNKFV-MVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
D + L ++F I N + +VEFYAPWCGHC+ L + V
Sbjct: 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQ-VAAVN 74
Query: 151 VDATEENELAHEYDVQGFPTIYFF----------VDGQHKA--------YNGGRTKDAIV 192
D + L +YDV GFPT+ F +D K+ Y+G RT IV
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV 134
Query: 193 TWIKKKIGPGIYNITTLDEAERVLTSETKV 222
+ +I + +D +L K+
Sbjct: 135 DFSLSRIRSYVKKFVRIDTLGSLLRKSPKL 164
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
+DV+ +NK V+V+F+A WCG C+ TE + + +AK+D E A +
Sbjct: 19 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTVAKLDVDTNPETARNF 75
Query: 164 DVQGFPTIYFFVDGQH-KAYNGGRTKDAIV 192
V PT+ F DGQ K G + K A++
Sbjct: 76 QVVSIPTLILFKDGQPVKRIVGAKGKAALL 105
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 496
V +F VL +K VL++ +A WCG C+ P ++A R D + +AK+D TN
Sbjct: 12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 69
Query: 497 EHHRA-KSDGFPTILFFPAGN 516
E R + PT++ F G
Sbjct: 70 ETARNFQVVSIPTLILFKDGQ 90
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
+VL E NF +VI NNK V+V+ +A WC C + K V +++ E
Sbjct: 7 LVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG---KAVFGRLNVDE 63
Query: 156 ENELAHEYDVQGFPTIYFFVDGQ 178
++A +Y V PT FV+GQ
Sbjct: 64 NQKIADKYSVLNIPTTLIFVNGQ 86
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 434 DVKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 492
DV +V+ NFDE++ + +K VL++ +A WC C +EP Y K+A+ +G V +++
Sbjct: 4 DVTLVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLN 60
Query: 493 GTTNEHHRAKSD--GFPTILFFPAG 515
N+ K PT L F G
Sbjct: 61 VDENQKIADKYSVLNIPTTLIFVNG 85
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
+DV+ +NK V+V+F+A WCG C+ TE + + +AK+D E A +
Sbjct: 24 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT---DLTVAKLDVDTNPETARNF 80
Query: 164 DVQGFPTIYFFVDGQH-KAYNGGRTKDAIV 192
V PT+ F DGQ K G + K A++
Sbjct: 81 QVVSIPTLILFKDGQPVKRIVGAKGKAALL 110
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 496
V +F VL +K VL++ +A WCG C+ P ++A R D + +AK+D TN
Sbjct: 17 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 74
Query: 497 EHHRA-KSDGFPTILFFPAGN 516
E R + PT++ F G
Sbjct: 75 ETARNFQVVSIPTLILFKDGQ 95
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V NF++ VL K VL++ +APWCG C+ P +LAK G +V +D N
Sbjct: 6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 498 HHRAKSDGFPTILFFPAGN 516
+ PT+L F G
Sbjct: 66 AAQYGIRSIPTLLLFKNGQ 84
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
V+ + + NF +V++++K V+V+F+APWCG C+ EL E V
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCR----MIAPIIEELAKEYEGKVKVVKVN 58
Query: 154 TEEN-ELAHEYDVQGFPTIYFFVDGQ 178
+EN A +Y ++ PT+ F +GQ
Sbjct: 59 VDENPNTAAQYGIRSIPTLLLFKNGQ 84
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEEN 157
L +NF + I NK V+V+F+A WC C EL + V K++ E
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPC----LILAPVIEELANDYPQVAFGKLNTEESQ 66
Query: 158 ELAHEYDVQGFPTIYFFVDGQ 178
++A Y + PTI FF +G+
Sbjct: 67 DIAMRYGIMSLPTIMFFKNGE 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DD +++ L+ R F + + + V FY+P C HC E+ + +
Sbjct: 95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGA 151
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAIVTWIKKKIGPGIYNITT 208
V+ ++ L V +P+++ F G YNG R+K+++V + + + + ++T
Sbjct: 152 VNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST 210
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 21/91 (23%)
Query: 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGV---------DSIVIAKMDGTTNEHHRAKSDG 505
+ Y+P C HC PT+ + AK + G+ D ++ +M G +
Sbjct: 118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNS--------- 168
Query: 506 FPTILFFPAGNKSFDPINVDVDRTVVALYKF 536
+P++ F +G + + + DR+ +L F
Sbjct: 169 YPSLFIFRSGMAA---VKYNGDRSKESLVAF 196
>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27
pdb|4F9Z|A Chain A, Crystal Structure Of Human Erp27
pdb|4F9Z|B Chain B, Crystal Structure Of Human Erp27
pdb|4F9Z|C Chain C, Crystal Structure Of Human Erp27
pdb|4F9Z|E Chain E, Crystal Structure Of Human Erp27
Length = 227
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 291 DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAK 348
D + ++ F+ N L +VT + +F S I+ LLL S + E+ + +++AAK
Sbjct: 99 DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAK 158
Query: 349 SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKT 408
F+GK++F+ V ++ GK +S + + P + Y DD + E++++ ++
Sbjct: 159 LFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQN 218
Query: 409 FGEDFLEGK 417
F + FL GK
Sbjct: 219 FCDGFLSGK 227
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
+DV+ +NK V+V+F+A WCG + TE + + +AK+D E A +
Sbjct: 21 TDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERAT---DLTVAKLDVDTNPETARNF 77
Query: 164 DVQGFPTIYFFVDGQH-KAYNGGRTKDAIV 192
V PT+ F DGQ K G + K A++
Sbjct: 78 QVVSIPTLILFKDGQPVKRIVGAKGKAALL 107
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 496
V +F VL +K VL++ +A WCG + P ++A R D + +AK+D TN
Sbjct: 14 VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 71
Query: 497 EHHRA-KSDGFPTILFFPAGN 516
E R + PT++ F G
Sbjct: 72 ETARNFQVVSIPTLILFKDGQ 92
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
NK V+++FYA WCG C+ EL + VV KVD E ++A + + P
Sbjct: 20 NKLVVIDFYATWCGPCK----MIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMP 75
Query: 170 TIYFFVDGQHKAYNGGRTKDAIVTWIKK 197
T F +GQ G D ++ ++K
Sbjct: 76 TFLFMKNGQKLDSLSGANYDKLLELVEK 103
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG----F 506
+K V+++ YA WCG C+ P +L++ + V V K+D +E D
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDV---VFLKVD--VDECEDIAQDNQIACM 74
Query: 507 PTILFFPAGNK 517
PT LF G K
Sbjct: 75 PTFLFMKNGQK 85
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEY 163
V+ + VEF+A WCGHC ++K+ ++ LA +D EE + + ++
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 164 DVQGFPTIYFF 174
++ GFPT+ FF
Sbjct: 86 NIPGFPTVRFF 96
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 447 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEHHRAKSD- 504
VL +E +A WCGHC AF PT+ LA+ ++ ++ +A +D + D
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 505 ---GFPTILFFPA 514
GFPT+ FF A
Sbjct: 86 NIPGFPTVRFFXA 98
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E+ VMV+F+APWCG C+ E + + K++ E +A +Y++
Sbjct: 13 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNI 69
Query: 166 QGFPTIYFFVDGQHK 180
+ PT+ FF +G+ K
Sbjct: 70 RSIPTVLFFKNGERK 84
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
+++ E VL+ V+++ +APWCG C+ P ++LAK G ++ D +
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 501 AKSDGFPTILFFPAGNK 517
PT+LFF G +
Sbjct: 67 YNIRSIPTVLFFKNGER 83
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+ K V+++F+A WCG C+ T+ ++VV+ KVD E ++A EY++
Sbjct: 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDECEDIAMEYNISSM 75
Query: 169 PTIYFFVDG----QHKAYNGGRTKDAI 191
PT F +G + N R +D I
Sbjct: 76 PTFVFLKNGVKVEEFAGANAKRLEDVI 102
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPT 508
K V+L+ +A WCG C+ P +L+ D++V+ K+D E + + PT
Sbjct: 20 GKLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPT 77
Query: 509 ILFFPAGNK 517
+F G K
Sbjct: 78 FVFLKNGVK 86
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E+ VMV+F+APWCG C+ E + + K++ E +A +Y++
Sbjct: 14 VLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNI 70
Query: 166 QGFPTIYFFVDGQHK 180
+ PT+ FF +G+ K
Sbjct: 71 RSIPTVLFFKNGERK 85
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 493
+V+ V +++ E VL+ V+++ +APWCG C+ P ++LAK G ++ D
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 494 TTNEHHRAKSDGFPTILFFPAGNK 517
+ PT+LFF G +
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGER 84
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+ K V+++F+A WCG C+ T+ ++VV+ KVD E ++A EY++
Sbjct: 24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDECEDIAMEYNISSM 80
Query: 169 PTIYFFVDG----QHKAYNGGRTKDAI 191
PT F +G + N R +D I
Sbjct: 81 PTFVFLKNGVKVEEFAGANAKRLEDVI 107
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTI 509
K V+L+ +A WCG C+ P +L+ D++V+ K+D E + + PT
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPTF 83
Query: 510 LFFPAGNK 517
+F G K
Sbjct: 84 VFLKNGVK 91
>pdb|2BJX|A Chain A, Protein Disulfide Isomerase
pdb|1BJX|A Chain A, Human Protein Disulfide Isomerase, Nmr, 24 Structures
Length = 110
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 212 AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRP 271
AE ++ S V+G+ + ++ A+ DD+ F T+N DV + LD +
Sbjct: 11 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KD 66
Query: 272 ALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENA 315
+V+ KK E + F+G+ K + DF+ N+LPLV FT + A
Sbjct: 67 GVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA 110
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 100 ERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENEL 159
++NF + + + V+V+F+A WC C+ E + +++AK+D E +
Sbjct: 9 DQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKT 65
Query: 160 AHEYDVQGFPTIYFFVDGQ 178
A Y V PT+ F DGQ
Sbjct: 66 AXRYRVXSIPTVILFKDGQ 84
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V NFDE L + VL++ +A WC C+ P ++AK G +++AK+D N
Sbjct: 7 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 63
Query: 498 H--HRAKSDGFPTILFFPAGN 516
R + PT++ F G
Sbjct: 64 KTAXRYRVXSIPTVILFKDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 100 ERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENEL 159
++NF + + + V+V+F+A WC C+ E + +++AK+D E +
Sbjct: 8 DQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKT 64
Query: 160 AHEYDVQGFPTIYFFVDGQ 178
A Y V PT+ F DGQ
Sbjct: 65 AXRYRVXSIPTVILFKDGQ 83
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V NFDE L + VL++ +A WC C+ P ++AK G +++AK+D N
Sbjct: 6 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 62
Query: 498 H--HRAKSDGFPTILFFPAGN 516
R + PT++ F G
Sbjct: 63 KTAXRYRVXSIPTVILFKDGQ 83
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K +V+FYA WCG C+ E + + KV+ +E ELA ++ +QG
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQGI 106
Query: 169 PTIYFF-VDGQHKAYNGGRTKDAIVTWIKK 197
PTI+F + G+ + G +K+ + +I K
Sbjct: 107 PTIWFVPMKGEPQVNMGALSKEQLKGYIDK 136
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 511
K +++ YA WCG C+ P +L+K G I +D G PTI F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 512 FP 513
P
Sbjct: 112 VP 113
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
E K V+++F A WCG C+ + A V KVD E E+A +Y+V+
Sbjct: 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA----VFLKVDVDELKEVAEKYNVEA 89
Query: 168 FPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
PT F DG G KD + I K +G
Sbjct: 90 MPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 122
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 508
+ K V+++ A WCG C+ P + + AK G + + +D + + PT
Sbjct: 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV-DVDELKEVAEKYNVEAMPT 92
Query: 509 ILFFPAGNKS 518
LF G ++
Sbjct: 93 FLFIKDGAEA 102
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCGHC+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCGHC+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
V+ F V +K V+++F+A WCG C+ A + V KVD E
Sbjct: 19 VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISD--TPAGDKVGFYKVDVDE 76
Query: 156 ENELAHEYDVQGFPTIYFFVDGQ 178
++++A E ++ PT FF +GQ
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKNGQ 99
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 433 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 492
G V+++ + + V K V+++ +A WCG C+ P + K++ G D + K+D
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD 73
Query: 493 GTTNEHHRAKSDG---FPTILFFPAGNK 517
+ A+ G PT +FF G K
Sbjct: 74 -VDEQSQIAQEVGIRAMPTFVFFKNGQK 100
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
+ F +VL+ S VL++ +APWCG C+ P +++A + V D + N
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 501 AKSDGFPTILFFPAGNKS 518
PTI+ F G K
Sbjct: 69 YGIRSIPTIMVFKGGKKC 86
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E++ V+V+F+APWCG C+ E K + V K++ E +A EY +
Sbjct: 15 VLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV---KLNTDESPNVASEYGI 71
Query: 166 QGFPTIYFFVDGQH-KAYNGGRTKDAIVTWIKK 197
+ PTI F G+ + G K IV ++K
Sbjct: 72 RSIPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 102 NFSDVIENNKF-VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELA 160
+F D + N++ V+V+F+A WCG C+ + + VV+AKVD + +LA
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKM---VAKQHGKVVMAKVDIDDHTDLA 78
Query: 161 HEYDVQGFPTIYFFVDGQ-HKAYNGGRTKDAIVTWIKKKIG 200
EY+V PT+ +G + G + +D + ++KK IG
Sbjct: 79 IEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 119
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK--MDGTTNE 497
G +F + V++ V+++ +A WCG C+ P K+ G +V+AK +D T+
Sbjct: 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHTDL 77
Query: 498 HHRAKSDGFPTILFFPAGN 516
+ PT+L G+
Sbjct: 78 AIEYEVSAVPTVLAMKNGD 96
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
++V+F+APWCG C+ L V LAK+D +A + +QG P
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAG---QVRLAKIDTQAHPAVAGRHRIQGIPAFI 123
Query: 173 FFVDGQHKAY-NGGRTKDAIVTWIKKKIG 200
F G+ A G R +V +++ K+G
Sbjct: 124 LFHKGRELARAAGARPASELVGFVRGKLG 152
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTI 509
+L++ +APWCG C+ P + A L G + +AK+D T H R + G P
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKID--TQAHPAVAGRHRIQGIPAF 122
Query: 510 LFFPAGNK 517
+ F G +
Sbjct: 123 ILFHKGRE 130
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F ++I+ N ++++FYA WCG C+ T+L A V K D E ++A E
Sbjct: 23 FRNLIKQNDKLVIDFYATWCGPCK----MMQPHLTKLIQAYPDVRFVKCDVDESPDIAKE 78
Query: 163 YDVQGFPTIYFFVDGQ 178
+V PT DGQ
Sbjct: 79 CEVTAMPTFVLGKDGQ 94
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 447 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 478
++ ++ ++++ YA WCG C+ +P KL +
Sbjct: 26 LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQ 57
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Query: 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAK 150
DD +++ L+ R F + + + V FY+P H E+ + +
Sbjct: 114 DDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL---LRIGA 170
Query: 151 VDATEENELAHEYDVQGFPTIYFFVDGQHKA-YNGGRTKDAIVTWIKKKIGPGIYNITTL 209
V+ ++ L V +P+++ F G YNG R+K+++V + + + + ++T
Sbjct: 171 VNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTG 230
Query: 210 DEAERVLTSETKVVLGYLNSLVGSESEVLADASRLE 245
+ + T+ V G+L + + L +RL
Sbjct: 231 NFVNAIETAFAAGV-GWLITFCSKGEDCLTSQTRLR 265
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 89 EIDDKDVVVLKERNFSDVIENNK---FVMVEFYAPWCGHCQXXXXXXXXXXTELKSANES 145
++ + VV L F+++++ K MV+FY+PW Q L
Sbjct: 539 DLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL--- 595
Query: 146 VVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYN----GGRTKDA--IVTWIKKKI 199
+ + VD + + + +VQ +P I F+ KAY G +DA + +W +
Sbjct: 596 INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL 655
Query: 200 GPGIYNITTLDEAERVLTSETKVVLGYLNSLVG 232
++T E+VL +T V+ + G
Sbjct: 656 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSG 688
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 52/219 (23%)
Query: 283 ISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQ------LLLF--AVSN 334
I ++G I +F+ + P V T PS F +K + ++ F S+
Sbjct: 521 IHEYEGHHSAEQILEFIEDLRNPSVVSLT----PSTFNELVKQRKHDEVWMVDFYSPWSH 576
Query: 335 DSEKLLPVFEEAAKSFKGKLIFV----------YVQMDNEDVGKPVSEYFGITGEAPKVL 384
S+ L+P ++ A++ G LI V + +N + Y + +A +
Sbjct: 577 PSQVLMPEWKRMARTLTG-LINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYH 635
Query: 385 AYTG-NDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNF 443
+Y G N DA ++++G FL P D P+T F
Sbjct: 636 SYNGWNRDAYS-----------LRSWGLGFL-----PQASIDLTPQT------------F 667
Query: 444 DEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482
+E VL +++ YAPW G Q F P + LA+ ++G
Sbjct: 668 NEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG 706
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 114 MVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173
+V+F+APW + T L + + +D T L + Y++Q +PT
Sbjct: 459 LVDFFAPWSPPSRALLPELRKASTLLYG---QLKVGTLDCTIHEGLCNMYNIQAYPTTVV 515
Query: 174 FVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNIT 207
F Y G + + I+ +I+ P + ++T
Sbjct: 516 FNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLT 549
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 105 DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYD 164
DV++N+K V+V+F+A WCG C+ E + + + K++ E A +Y
Sbjct: 18 DVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY---GDKIEIVKLNIDENPGTAAKYG 74
Query: 165 VQGFPTIYFFVDGQ-HKAYNGGRTKDAIV 192
V PT+ + G+ K G + K AIV
Sbjct: 75 VMSIPTLNVYQGGEVAKTIVGAKPKAAIV 103
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 433 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 492
G +K V ++F++ VL K VL++ +A WCG C+ P+ +A D I I K++
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLN 62
Query: 493 GTTNEHHRAKSD--GFPTILFFPAG 515
N AK PT+ + G
Sbjct: 63 IDENPGTAAKYGVMSIPTLNVYQGG 87
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V+E+ VMV+F+APWCG + E + + K++ E +A +Y++
Sbjct: 14 VLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNI 70
Query: 166 QGFPTIYFFVDGQHK 180
+ PT+ FF +G+ K
Sbjct: 71 RSIPTVLFFKNGERK 85
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 493
+V+ V +++ E VL+ V+++ +APWCG + P ++LAK G ++ D
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 494 TTNEHHRAKSDGFPTILFFPAGNK 517
+ PT+LFF G +
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGER 84
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K +V+FYA WCG C+ E + + KV+ +E ELA ++ +Q
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQSI 106
Query: 169 PTIYFF-VDGQHKAYNGGRTKDAIVTWIKK 197
PTI+F + G+ + G +K+ + +I K
Sbjct: 107 PTIWFVPMKGEPQVNMGALSKEQLKGYIDK 136
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 511
K +++ YA WCG C+ P +L+K G I +D PTI F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 512 FP 513
P
Sbjct: 112 VP 113
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEE--NELAHEY 163
V+ ++ VEF+A WCGH ++K ++ LA +D EE + + E+
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 164 DVQGFPTIYFF 174
++ GFPT+ FF
Sbjct: 86 NIAGFPTVRFF 96
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 447 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVIAKMDGTTNEH--HRA 501
VL S +E +A WCGH AF PT+ +LA K R ++ + TN
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 502 KSDGFPTILFFPAGNKS 518
GFPT+ FF A K+
Sbjct: 86 NIAGFPTVRFFQAFTKN 102
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V+ L +NF + +++ +V+F+A WC C EL V K+++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPC----LILAPIIEELAEDYPQVGFGKLNSD 56
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E ++A Y V PT+ FF DG+
Sbjct: 57 ENPDIAARYGVMSLPTVIFFKDGE 80
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L E +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ +K V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGE 82
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 501
NF + + + K VL++ +A WCG C+ P + A+ D + +AK++ N +
Sbjct: 9 NFQQAIQGD-KPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTS 65
Query: 502 KSD--GFPTILFFPAG 515
+ PT++ F G
Sbjct: 66 QFGIMSIPTLILFKGG 81
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ +K V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGR 82
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 501
NF + + + K VL++ +A WCG C+ P + A+ D + +AK++ N +
Sbjct: 9 NFQQAIQGD-KPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTS 65
Query: 502 KSD--GFPTILFFPAG 515
+ PT++ F G
Sbjct: 66 QFGIMSIPTLILFKGG 81
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F I +K V+V+FYA WCG C+ + A+ K+D E ++A +
Sbjct: 11 FDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD----FYKLDVDELGDVAQK 66
Query: 163 YDVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F +G+ A G AI
Sbjct: 67 NEVSAMPTLLLFKNGKEVAKVVGANPAAI 95
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
+ FD + + K V+++ YA WCG C+ P K ++ D + +D +
Sbjct: 8 ASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQ 65
Query: 500 RAKSDGFPTILFFPAG 515
+ + PT+L F G
Sbjct: 66 KNEVSAMPTLLLFKNG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F I +K V+V+FYA WCG C+ + A+ K+D E ++A +
Sbjct: 17 FDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD----FYKLDVDELGDVAQK 72
Query: 163 YDVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F +G+ A G AI
Sbjct: 73 NEVSAMPTLLLFKNGKEVAKVVGANPAAI 101
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
+ FD + + K V+++ YA WCG C+ P K ++ D + +D +
Sbjct: 14 ASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQ 71
Query: 500 RAKSDGFPTILFFPAG 515
+ + PT+L F G
Sbjct: 72 KNEVSAMPTLLLFKNG 87
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
+ K V+++F A WCG C+ + A + KVD E ++A Y+V+
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA----IFLKVDVDELKDVAEAYNVEA 81
Query: 168 FPTIYFFVDGQH-KAYNGGRTKDAIVTWIKKKIG 200
PT F DG+ + GGR KD I T I +G
Sbjct: 82 MPTFLFIKDGEKVDSVVGGR-KDDIHTKIVALMG 114
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 508
D K V+++ A WCG C+ P + + AK G + + +D + + PT
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKV-DVDELKDVAEAYNVEAMPT 84
Query: 509 ILFFPAGNK 517
LF G K
Sbjct: 85 FLFIKDGEK 93
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
E +K +V+FYA WCG C+ E + +V+ KVD +E ELA + ++
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEY---DGQIVIYKVDTEKEQELAGAFGIRS 92
Query: 168 FPTIYFF-VDGQHKAYNGGRTK 188
P+I F ++G+ + G K
Sbjct: 93 IPSILFIPMEGKPEMAQGAMPK 114
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
N +E + K +++ YA WCG C+ P ++LAK G IVI K+D T E
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVD-TEKEQEL 84
Query: 501 AKSDG---FPTILFFPAGNK 517
A + G P+ILF P K
Sbjct: 85 AGAFGIRSIPSILFIPMEGK 104
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 501
+FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY 70
Query: 502 KSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 71 GIRGIPTLLLFKNG 84
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 111 KFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPT 170
+ ++V+F+A WCG C+ E+ V AKVD + E A +Y V PT
Sbjct: 20 RLIVVDFFAQWCGPCRNIAPKVEALAKEIPE----VEFAKVDVDQNEEAAAKYSVTAMPT 75
Query: 171 IYFFVDGQH 179
F DG+
Sbjct: 76 FVFIKDGKE 84
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 445 EIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 502
E +++E+K ++++ +A WCG C+ P LAK + V+ AK+D NE AK
Sbjct: 11 EKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVE---FAKVDVDQNEEAAAK 67
Query: 503 SD--GFPTILFFPAG 515
PT +F G
Sbjct: 68 YSVTAMPTFVFIKDG 82
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
V+ +F+APWCG C+ E+ + + + K+D E E A +Y V PT+
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 173 FFVDGQ 178
DG+
Sbjct: 77 VLKDGE 82
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 511
VL + +APWCG C+ P +L + + D + I K+D N+ K PT+L
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 512 FPAG 515
G
Sbjct: 78 LKDG 81
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P + +A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P ++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 26/251 (10%)
Query: 201 PGIYNITTLDEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLEDDVNFYQTTNPDVA 259
P + T +E ++ ++ + ++G+ + S + SE L AS L D+ F T +
Sbjct: 6 PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLV 65
Query: 260 KIFHLDSK---VNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAP 316
+ + + + RP+ + K E + ++Y + K I F+ N + T +N
Sbjct: 66 NEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKXTSGKIKKFIQENIFGICPHXTEDN-- 123
Query: 317 SVFESPIKNQLLLFAVSN-DSEKLLP--------VFEEAAKSFKGKLIFVYVQMDNEDVG 367
+ I+ + LL A + D EK V A K + +
Sbjct: 124 ---KDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVXXVAKKFLDAGHKLNFAVASRKTFS 180
Query: 368 KPVSEYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPFF 422
+S+ FG+ GE P V T +K + E + D ++ F +D+ +G LK +
Sbjct: 181 HELSD-FGLESTAGEIPVVAIRTAK--GEKFVXQEEFSRDGKALERFLQDYFDGNLKRYL 237
Query: 423 KSDPIPETNDG 433
KS+PIPE+NDG
Sbjct: 238 KSEPIPESNDG 248
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A+ +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 30/247 (12%)
Query: 206 ITTLDEAERVLTSETKVVLGYLNSLVGSESEVLAD--ASRLEDDVNFYQTTNPDVAKIFH 263
I TL + + L VV+ + VG + A+ L +D F+ T + ++AK
Sbjct: 11 ILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFL- 69
Query: 264 LDSKVNRPALVMVKKETEKISY--------FDGKFDKSTIADFVFSNKLPLVTIFTRENA 315
KV+ LV+ + E + Y G + S I D+V + LPLV N
Sbjct: 70 ---KVSLGKLVLXQPEKFQSKYEPRXHVXDVQGSTEASAIKDYVVKHALPLVGHRKTSND 126
Query: 316 PSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLI--------FVYVQMDNEDVG 367
+ K L++ S D + A + ++ K++ + + D ED
Sbjct: 127 AKRYS---KRPLVVVYYSVD---FSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYA 180
Query: 368 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDP 426
V + G++ V A ++ KK + E D ++ F F +GKLKP KS P
Sbjct: 181 TEVKD-LGLSESGGDVNAAILDESGKKFAXEPEEFDSDALREFVXAFKKGKLKPVIKSQP 239
Query: 427 IPETNDG 433
+P+ N G
Sbjct: 240 VPKNNKG 246
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++F+ VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 92 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
DK + V + +DV++ + ++V+F+A WCG C+ E + + +AK+
Sbjct: 2 DKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKL 58
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ + A +Y ++G PT+ F +G+ A G
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V ++FD VL +L++ +A WCG C+ P +++A +G ++ +D
Sbjct: 7 VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 498 HHRAKSDGFPTILFFPAG 515
+ G PT+L F G
Sbjct: 67 APKYGIRGIPTLLLFKNG 84
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 105 DVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYD 164
DV++ + V+V+F+A WCG C+ E V +AKV+ + E + Y
Sbjct: 15 DVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG---KVTVAKVNIDDNPETPNAYQ 71
Query: 165 VQGFPTIYFFVDGQ 178
V+ PT+ DG+
Sbjct: 72 VRSIPTLMLVRDGK 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD+ VL S VL++ +A WCG C+ P ++ K G ++ +D +
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 501 AKSDGFPTILFFPAG 515
+ PT++ G
Sbjct: 70 YQVRSIPTLMLVRDG 84
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+ K ++V+F A WC C+ EL +V KVD E +A E++V+
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIF----AELAKKFPNVTFLKVDVDELKAVAEEWNVEAM 80
Query: 169 PTIYFFVDGQHKAYNGGRTKDAIVTWIKK 197
PT F DG+ G KD + T + K
Sbjct: 81 PTFIFLKDGKLVDKTVGADKDGLPTLVAK 109
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAGN 516
G PT+L F G+
Sbjct: 70 YGIRGIPTLLLFKNGD 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGDVAATKVG 92
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 20 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 79
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 80 YGIRGIPTLLLFKNG 94
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 70
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 71 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 102
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 61
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 62 DQNPGTAPKYGIRGTPTLLLFKNGEVAATKVG 93
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 71 YGIRGTPTLLLFKNG 85
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
+V + F +I N+ V+V+F+A WCG C+ E +V KVD E
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYE----ECSKTYTKMVFIKVDVDE 67
Query: 156 ENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIV 192
+E+ + ++ PT K Y G + D ++
Sbjct: 68 VSEVTEKENITSMPT--------FKVYKNGSSVDTLL 96
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 435 VKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 478
VKIV FD I+ +++ V+++ +A WCG C+ P Y + +K
Sbjct: 10 VKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSK 53
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ + V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGE 82
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 511
VL++ +A WCG C+ P + A+ D + +AK++ N ++ PT++
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTSQFGIMSIPTLIL 77
Query: 512 FPAG 515
F G
Sbjct: 78 FKGG 81
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSAN-ESVVLAKVDAT 154
+ L + NF I+ + V+V+F+A WCG C+ E A+ + V +AK++
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLE----EFAEAHADKVTVAKLNVD 58
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E E ++ + PT+ F G+
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGR 82
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 501
NF + + + VL++ +A WCG C+ P + A+ D + +AK++ N +
Sbjct: 9 NFQQAIQGDGP-VLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTS 65
Query: 502 KSD--GFPTILFFPAG 515
+ PT++ F G
Sbjct: 66 QFGIMSIPTLILFKGG 81
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ + + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A +Y ++G
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDAQDVAPKYGIRGI 74
Query: 169 PTIYFFVDGQHKAYNGG 185
PT+ F +G+ A G
Sbjct: 75 PTLLLFKNGEVAATKVG 91
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + + G
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVAPKYGIRG 73
Query: 506 FPTILFFPAG 515
PT+L F G
Sbjct: 74 IPTLLLFKNG 83
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 443 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482
F+E VL +++ YAPWCG CQ F P + LA+ ++G
Sbjct: 13 FNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG 52
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDV 165
V++ +V+FYAPWCG CQ +K V KVD + + +
Sbjct: 17 VLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVRAGKVDCQAYPQTCQKAGI 73
Query: 166 QGFPTIYFF 174
+ +P++ +
Sbjct: 74 KAYPSVKLY 82
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 95 VVVLKER---NFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
++ KER S+ + K V+ F A WCG C+ EL S++ +
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYY----IELSENYPSLMFLVI 83
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH 179
D E ++ + ++++ PT +F DGQ
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQ 111
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 425 DPIPETNDGDVKIVVGN-NFDEIVLDESKD---VLLEIYAPWCGHCQAFEPTYNKLAKHL 480
+P E G+V ++ +D+ + + S+D VL A WCG C+ P Y +L+++
Sbjct: 16 EPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENY 75
Query: 481 RGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNK 517
+ +VI +D ++ + PT F G +
Sbjct: 76 PSLMFLVI-DVDELSDFSASWEIKATPTFFFLRDGQQ 111
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 112 FVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171
V+V+F+A WCG CQ + AN+ V KVD + A Y V P +
Sbjct: 25 LVLVDFFATWCGPCQ----RLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPAL 80
Query: 172 YF 173
+F
Sbjct: 81 FF 82
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 437 IVVGNNFDEIVLDESKD----VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 492
IV N E +L+ K+ VL++ +A WCG CQ +A+ + V + + +D
Sbjct: 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDV-TFIKVDVD 63
Query: 493 GTTNEHHRAKSDGFPTILFFPA-GN--KSFDP-INVDVDRTVVALYKF 536
N P + F GN K+ D + DV R + KF
Sbjct: 64 KNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKA 181
+ A +Y ++G PT+ F +G+ A
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAA 88
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVD 152
+++V + E N V+E + V FY W Q + N +LAK+D
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYF-WSERSQHCLQLTPILESLAAQYNGQFILAKLD 65
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAI 191
E +A ++ ++ PT+Y F +GQ + G + ++AI
Sbjct: 66 CDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI 105
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++ PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRSIPTLLLFKNGEVAATKVG 92
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
PT+L F G
Sbjct: 70 YGIRSIPTLLLFKNG 84
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 432 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 491
DG+V D+++ D+ V+ + +APWCG C++F P + + A G V
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVI-DFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95
Query: 492 DGTTNEHHRAKSDGFPTILFFPAGNKSFDPIN 523
+ R + PTI + G K D +N
Sbjct: 96 EAEPALSTRFRIRSIPTIXLYRNG-KXIDXLN 126
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 92 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
D +V+ +++++ +++F+APWCG C+ E V KV
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKV 93
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAIVTWIKKKI 199
+ E L+ + ++ PTI + +G+ NG K W+ +++
Sbjct: 94 NTEAEPALSTRFRIRSIPTIXLYRNGKXIDXLNGAVPKAPFDNWLDEQL 142
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASESEVKSM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + ++
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASESEVKS 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKS 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
VV E+ F+ + +V+F+APWCG C+ + + VV KV+
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARD-HAGRLKVV--KVNVD 91
Query: 155 EENELAHEYDVQGFPTIYFFVDG 177
E LA Y V+ PT+ F G
Sbjct: 92 EHPGLAARYGVRSVPTLVLFRRG 114
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 514
L++ +APWCG C+ P +LA+ G +V +D R PT++ F
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 515 G 515
G
Sbjct: 114 G 114
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 103 FSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHE 162
F I +K V+V+FYA WCG + + A+ K+D E ++A +
Sbjct: 17 FDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD----FYKLDVDELGDVAQK 72
Query: 163 YDVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F +G+ A G AI
Sbjct: 73 NEVSAMPTLLLFKNGKEVAKVVGANPAAI 101
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
+ FD + + K V+++ YA WCG + P K ++ D + +D +
Sbjct: 14 ASEFDSAIA-QDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQ 71
Query: 500 RAKSDGFPTILFFPAG 515
+ + PT+L F G
Sbjct: 72 KNEVSAMPTLLLFKNG 87
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKAT 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + A+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVASEAEVKA 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 TPTFQFFKKGQK 85
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD ++ +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YIERGIPTLLLFKNG 84
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +D+++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y +G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYIERGIPTLLLFKNGEVAATKVG 92
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVNDCQDVASECEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + ++ + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVNDCQDVASECEVKC 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGH-CQXXXXXXXXXXTELKSANESVVLAKVD 152
++ L + +F +DV++ + ++V+F+A WCG C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQG---KLTVAKLN 60
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
++FD VL +L++ +A WCG C+ P +++A +G ++ +D
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 69
Query: 500 RAKSDGFPTILFFPAG 515
+ G PT+L F G
Sbjct: 70 KYGIRGIPTLLLFKNG 85
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASEXEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASEXEVKC 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 108 ENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQG 167
E+ V+V+F A WCG C+ +L + V+ KVD E +A ++ +Q
Sbjct: 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDELKSVASDWAIQA 91
Query: 168 FPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
PT F +G+ G KD + + I K +
Sbjct: 92 MPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 449 DESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--- 504
+ESK V+++ A WCG C+ P + LAK L V + K+D T+E SD
Sbjct: 35 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNV---LFLKVD--TDELKSVASDWAI 89
Query: 505 -GFPTILFFPAG 515
PT +F G
Sbjct: 90 QAMPTFMFLKEG 101
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
V+ +F+APWCG + E+ + + + K+D E E A +Y V PT+
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 173 FFVDGQ 178
DG+
Sbjct: 77 VLKDGE 82
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 511
VL + +APWCG + P +L + + D + I K+D N+ K PT+L
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 512 FPAG 515
G
Sbjct: 78 LKDG 81
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKC 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 90 IDDKDVVVLKERNFSDVIENNKF-VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL 148
++ ++ ++ +S +E++K V+V FY+P C +C+ E S S V
Sbjct: 3 LNGSSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGS---SAVF 59
Query: 149 AKVDATEENELAHEYDVQGFPTIYFFVDGQ 178
+++ A +Y VQG PT FF G+
Sbjct: 60 GRINIATNPWTAEKYGVQGTPTFKFFCHGR 89
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 501
+ + V D K V++ Y+P C +C+A EP + + AK S V +++ TN
Sbjct: 15 TWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRINIATNPWTAE 72
Query: 502 KS--DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 541
K G PT FF G ++ + +Y + KNA
Sbjct: 73 KYGVQGTPTFKFFCHGRPVWEQVG--------QIYPSILKNA 106
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WC C+ E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WC C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
V+ +F+APWCG + E+ + + + K+D E E A +Y V PT+
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEM---GDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
Query: 173 FFVDGQ 178
DG+
Sbjct: 77 VLKDGE 82
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 511
VL + +APWCG + P +L + + D + I K+D N+ K PT+L
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 512 FPAG 515
G
Sbjct: 78 LKDG 81
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVD 152
+++V + E N +E + V FY W Q + + +LAK+D
Sbjct: 7 QNIVNINESNLQQTLEQSXTTPVLFYF-WSERSQHCLQLTPVLESLAAQYHGQFILAKLD 65
Query: 153 ATEENELAHEYDVQGFPTIYFFVDGQH-KAYNGGRTKDAIVTWIKK 197
E +A ++ ++ PT+Y F +GQ + G + ++AI + K
Sbjct: 66 CDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDK 111
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG + E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WCG + P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG C+ + + + + K+D
Sbjct: 5 IVKVTDADFDSKVESG-VQLVDFWATWCGSCKMIAPVLEELAADYEGKAD---ILKLDVD 60
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 8 VTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDENP 63
Query: 498 HHRAKSD--GFPTILFFPAGN 516
AK + PT++ F G
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQ 84
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG C+ + + + + K+D
Sbjct: 6 IVKVTDADFDSKVESG-VQLVDFWATWCGTCKMIAPVLEELAADYEGKAD---ILKLDVD 61
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 498 HHRAKSD--GFPTILFFPAGN 516
AK + PT++ F G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQ 85
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
K V+++F A WCG C+ + +A V KVD E +A ++ V+ P
Sbjct: 34 KKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA----VFLKVDVDELKPIAEQFSVEAMP 89
Query: 170 TIYFFVDGQHKAYNGGRTKD 189
T F +G K G K+
Sbjct: 90 TFLFMKEGDVKDRVVGAIKE 109
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 511
K V+++ A WCG C+ P + LAK + + +D + + PT LF
Sbjct: 35 KLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKV-DVDELKPIAEQFSVEAMPTFLF 93
Query: 512 FPAGN 516
G+
Sbjct: 94 MKEGD 98
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 431 NDGD----VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGV 483
NDG+ V + FD IV+D KDV + Y PW H A ++ L+ R
Sbjct: 9 NDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNH 68
Query: 484 DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 540
+ V A++DG R + GFPT+ ++ +K +P R + + F+ +N
Sbjct: 69 LTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQ-EPFEYSGQRYLSLVDSFVFQN 126
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXX--XXXXXXTELKSANESVVLAKV 151
VV L + F S V++ K V V +Y PW H K + + V A++
Sbjct: 17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARI 76
Query: 152 DATEENELAHEYDVQGFPTIYFF--VDGQHK-AYNGGR 186
D + ++ V GFPT+ ++ +D Q Y+G R
Sbjct: 77 DGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQR 114
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG C+ + + + + K+D
Sbjct: 6 IVKVTDADFDSKVESG-VQLVDFWATWCGPCKMIAPVLEELAADYEGKAD---ILKLDVD 61
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 498 HHRAKSD--GFPTILFFPAGN 516
AK + PT++ F G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQ 85
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
NK V+V+F+A WCG C+ EL S + KVD + E A +Y++ P
Sbjct: 24 NKLVVVDFFATWCGPCK----TIAPLFKEL-SEKYDAIFVKVDVDKLEETARKYNISAMP 78
Query: 170 TIYFFVDGQ 178
T +G+
Sbjct: 79 TFIAIKNGE 87
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI 509
++K V+++ +A WCG C+ P + +L++ + V +D + PT
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI--FVKVDVDKLEETARKYNISAMPTF 80
Query: 510 LFFPAGNKSFDPINVDVDRTVVALYKFL 537
+ G K D + + + + KF+
Sbjct: 81 IAIKNGEKVGDVVGASIAKVEDMIKKFI 108
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCT 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKC 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 TPTFQFFKKGQK 85
>pdb|2DJK|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP2|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 133
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 400 ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG 433
E+T + IK F +DF+ GK++P KS+PIPE +G
Sbjct: 100 EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG 133
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 110 NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFP 169
NK V+V+F+A WCG C+ EL S + KVD + E A +Y++ P
Sbjct: 33 NKLVVVDFFATWCGPCKTIAPLFK----EL-SEKYDAIFVKVDVDKLEETARKYNISAMP 87
Query: 170 TIYFFVDGQHKAYNGGRTKDAIVTWIKKKI 199
T +G+ G + + IKK I
Sbjct: 88 TFIAIKNGEKVGDVVGASIAKVEDMIKKFI 117
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 424 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 483
S+ I DGD++ ++ + ++K V+++ +A WCG C+ P + +L++ +
Sbjct: 13 SELIELKQDGDLESLLEQH-------KNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI 65
Query: 484 DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 537
V +D + PT + G K D + + + + KF+
Sbjct: 66 --FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI 117
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG C+ + A K+D E +++A +
Sbjct: 20 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 75
Query: 164 DVQGFPTIYFFVDGQHKAYNGGRTKDAI 191
+V PT+ F+ G+ G AI
Sbjct: 76 EVSSMPTLIFYKGGKEVTRVVGANPAAI 103
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
+ +D + K V+++ +A WCG C+ P K A+ + +D ++
Sbjct: 15 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 73
Query: 500 RAKSDGFPTILFFPAGNK 517
+A+ PT++F+ G +
Sbjct: 74 KAEVSSMPTLIFYKGGKE 91
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG C+ + A K+D E +++A +
Sbjct: 13 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 68
Query: 164 DVQGFPTIYFFVDGQH 179
+V PT+ F+ G+
Sbjct: 69 EVSSMPTLIFYKGGKE 84
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
+ +D + K V+++ +A WCG C+ P K A+ + +D ++
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 66
Query: 500 RAKSDGFPTILFFPAGNK 517
+A+ PT++F+ G +
Sbjct: 67 KAEVSSMPTLIFYKGGKE 84
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 95 VVVLKER---NFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
++ KER S+ + K V+ F A WCG + EL S++ +
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYY----IELSENYPSLMFLVI 83
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH 179
D E ++ + ++++ PT +F DGQ
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQ 111
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDSQDVASESEVKSM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG + +P ++ L++ V + + +D + + ++
Sbjct: 15 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDSQDVASESEVKS 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 427 IPETNDGDVKI-VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 485
+P + D I + ++FD VL +L++ +A WCG + P +++A +G +
Sbjct: 15 VPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLT 74
Query: 486 IVIAKMDGTTNEHHRAKSDGFPTILFFPAG 515
+ +D + G PT+L F G
Sbjct: 75 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 104
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WCG + E + + +AK++
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG---KLTVAKLNI 80
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 81 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 112
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 511
K V+L+++ WCG C+A P Y KLA+ ++ K+D AK G +
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 512 F 512
F
Sbjct: 83 F 83
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENE-LAHEYDVQG 167
+K V+++ + WCG C+ +L V+ K+D +EN+ LA E ++
Sbjct: 24 GDKPVVLDMFTQWCGPCKAMAPKYE----KLAEEYLDVIFLKLDCNQENKTLAKELGIRV 79
Query: 168 FPT 170
PT
Sbjct: 80 VPT 82
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 511
K V+L+++ WCG C+A P Y KLA+ ++ K+D AK G +
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 512 F 512
F
Sbjct: 95 F 95
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENE-LAHEYDVQG 167
+K V+++ + WCG C+ +L V+ K+D +EN+ LA E ++
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYE----KLAEEYLDVIFLKLDCNQENKTLAKELGIRV 91
Query: 168 FPT 170
PT
Sbjct: 92 VPT 94
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDA 153
++ L + +F +DV++ + ++V+F+A WC + E + + +AK++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 154 TEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ A +Y ++G PT+ F +G+ A G
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
++FD VL +L++ +A WC + P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 501 AKSDGFPTILFFPAG 515
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPAKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKAT 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG + +P ++ L++ V + + +D + A+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVASEAEVKA 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 TPTFQFFKKGQK 85
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL-AKVDA 153
+ + E N + V K VM++ YA WC C+ K+ ++V+L A V A
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 75
Query: 154 TEENELA--HEYDVQGFPTIYFFVDGQHKAYNGGR 186
+ ++A +V G PTI FF DGQ + + R
Sbjct: 76 NDAQDVALLKHLNVLGLPTILFF-DGQGQEHPQAR 109
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 446 IVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------ 499
+V + K V+L++YA WC C+ FE + + + V+ + + T N+
Sbjct: 26 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85
Query: 500 RAKSDGFPTILFF 512
G PTILFF
Sbjct: 86 HLNVLGLPTILFF 98
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL-AKVDA 153
+ + E N + V K VM++ YA WC C+ K+ ++V+L A V A
Sbjct: 13 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 72
Query: 154 TEENELA--HEYDVQGFPTIYFFVDGQHKAYNGGR 186
+ ++A +V G PTI FF DGQ + + R
Sbjct: 73 NDAQDVALLKHLNVLGLPTILFF-DGQGQEHPQAR 106
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 446 IVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------ 499
+V + K V+L++YA WC C+ FE + + + V+ + + T N+
Sbjct: 23 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 82
Query: 500 RAKSDGFPTILFF 512
G PTILFF
Sbjct: 83 HLNVLGLPTILFF 95
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSM 85
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 86 PTFQFFKKGQKVGEFSGANKEKL 108
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 433 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 490
G VK + + LD + D V+++ A WCG + +P ++ L++ V + +
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-D 69
Query: 491 MDGTTNEHHRAKSDGFPTILFFPAGNK 517
+D + + PT FF G K
Sbjct: 70 VDDCQDVASECEVKSMPTFQFFKKGQK 96
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKRM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 448 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 505
LD + D V+++ A WCG + +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKR 73
Query: 506 FPTILFFPAGNK 517
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 443 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 502
F+ VL + VL+ +A WCG CQ P N A +V ++D + K
Sbjct: 17 FESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK 76
Query: 503 SDGFPTI 509
+G P +
Sbjct: 77 VEGVPAL 83
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 93 KDVVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKV 151
K V+ + + F S+V++ + V+V F+A WCG CQ + ++ + + K+
Sbjct: 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAA---NTYSDRLKVVKL 63
Query: 152 DATEENELAHEYDVQGFPTIYFFVDGQH--KAYNGGRTKDAIVTWI 195
+ +Y V+G P + V G+ + G +KD +++++
Sbjct: 64 EIDPNPTTVKKYKVEGVPALR-LVKGEQILDSTEGVISKDKLLSFL 108
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXX--XTELKSANESVVLAKVDATEENELAHEYDVQ 166
+ + VMV F++ C +CQ + L A V VD E ELA Y V
Sbjct: 18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVP 77
Query: 167 GFPTIYFFV 175
G PT F V
Sbjct: 78 GTPTFVFLV 86
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 107 IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQ 166
++ ++V F+APW C EL V K++A E++ +Y++
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ----VSFVKLEAEGVPEVSEKYEIS 84
Query: 167 GFPTIYFFVDGQ 178
PT FF + Q
Sbjct: 85 SVPTFLFFKNSQ 96
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 440 GNNFDEIVLDESKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 498
F+E++ ++K +L+ +APW C +LAK L V S V + +G
Sbjct: 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQV-SFVKLEAEGVPEVS 78
Query: 499 HRAKSDGFPTILFFPAGNK 517
+ + PT LFF K
Sbjct: 79 EKYEISSVPTFLFFKNSQK 97
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A WCG + + + + + K+D
Sbjct: 6 IVKVTDADFDSKVESG-VQLVDFWATWCGTSKMIAPVLEELAADYEGKAD---ILKLDVD 61
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497
V +FD V ES L++ +A WCG + P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 498 HHRAKSD--GFPTILFFPAGN 516
AK + PT++ F G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQ 85
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 95 VVVLKERNF-SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKS--------ANE- 144
++ L + +F +DV++ + ++V+F+A WCG + K A+E
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 145 --SVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG 185
+ +AK++ + A +Y ++G PT+ F +G+ A G
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 107
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWC--------------GHCQAFEPTYNKLAKHLRGVDSI 486
++FD VL +L++ +A WC G C+ P +++A +G ++
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTV 70
Query: 487 VIAKMDGTTNEHHRAKSDGFPTILFFPAG 515
+D + G PT+L F G
Sbjct: 71 AKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 113 VMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172
+++ F WC C+ ++++ + A +DA + + E +++ P++
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEG---DIRFAYMDAEDAEKTMAELNIRTLPSLA 76
Query: 173 FFVDGQ-HKAYNGGRTKDAIVTWIKKKI 199
FVDG + ++G K + WI I
Sbjct: 77 LFVDGMIREVFSGTMNKSDLRYWINNNI 104
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 337 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE 372
+K+ P FEE A +G + F Y MD ED K ++E
Sbjct: 33 KKMKPTFEEMASQMEGDIRFAY--MDAEDAEKTMAE 66
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 511
+++ WC C+ +PT+ ++A + G I A MD E A+ + P++
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEG--DIRFAYMDAEDAEKTMAELNIRTLPSLAL 77
Query: 512 FPAG 515
F G
Sbjct: 78 FVDG 81
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 111 KFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGFPT 170
K V+++F A WCG + + +A V KVD E +A ++ V+ PT
Sbjct: 38 KLVVIDFTASWCGPSRIMAPVFADLAKKFPNA----VFLKVDVDELKPIAEQFSVEAMPT 93
Query: 171 IYFFVDGQHKAYNGGRTKD 189
F +G K G K+
Sbjct: 94 FLFMKEGDVKDRVVGAIKE 112
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG + + A K+D E +++A +
Sbjct: 21 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 76
Query: 164 DVQGFPTIYFFVDGQH 179
+V PT+ F+ G+
Sbjct: 77 EVSSMPTLIFYKGGKE 92
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
+ +D + K V+++ +A WCG + P K A+ + +D ++
Sbjct: 16 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 74
Query: 500 RAKSDGFPTILFFPAGNK 517
+A+ PT++F+ G +
Sbjct: 75 KAEVSSMPTLIFYKGGKE 92
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 104 SDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEY 163
S + +K V+V+F+A WCG + + A K+D E +++A +
Sbjct: 13 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA----AFYKLDVDEVSDVAQKA 68
Query: 164 DVQGFPTIYFFVDGQH 179
+V PT+ F+ G+
Sbjct: 69 EVSSMPTLIFYKGGKE 84
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 499
+ +D + K V+++ +A WCG + P K A+ + +D ++
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 66
Query: 500 RAKSDGFPTILFFPAGNK 517
+A+ PT++F+ G +
Sbjct: 67 KAEVSSMPTLIFYKGGKE 84
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 107 IENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQ 166
++ ++V F+APW C EL V K++A E++ +Y++
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ----VSFVKLEAEGVPEVSEKYEIS 90
Query: 167 GFPTIYFFVDGQ 178
PT FF + Q
Sbjct: 91 SVPTFLFFKNSQ 102
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 443 FDEIVLDESKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 501
F+E++ ++K +L+ +APW C +LAK L V S V + +G +
Sbjct: 29 FEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQV-SFVKLEAEGVPEVSEKY 87
Query: 502 KSDGFPTILFFPAGNK 517
+ PT LFF K
Sbjct: 88 EISSVPTFLFFKNSQK 103
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
+V + + +F +E+ +V+F+A CG C+ + + + + K+D
Sbjct: 5 IVKVTDADFDSKVESG-VQLVDFWATACGPCKMIAPVLEELAADYEGKAD---ILKLDVD 60
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
E A +Y+V PT+ F DGQ
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A WCG C+ L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDXQDVASEXEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 511
K V+L+++ WCG +A P Y KLA+ V + K+D AK G +
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV---IFLKLDCNQENKTLAKELGIRVVPT 81
Query: 512 F 512
F
Sbjct: 82 F 82
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 106 VIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELK-SANESVVLAKVDATEENELAHEYD 164
+ + K +V F C CQ EL+ + ES VD EE L +
Sbjct: 18 IYDEGKACLVXFSRKNCHVCQKVTPVLE----ELRLNYEESFGFYYVDVEEEKTLFQRFS 73
Query: 165 VQGFPTIYFFVDGQHKAYNGGRTKD 189
++G P I +F DG++K G +D
Sbjct: 74 LKGVPQILYFKDGEYKGKXAGDVED 98
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 28/75 (37%)
Query: 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 500
N F++++ DE K L+ C CQ P +L + ++ R
Sbjct: 12 NTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQR 71
Query: 501 AKSDGFPTILFFPAG 515
G P IL+F G
Sbjct: 72 FSLKGVPQILYFKDG 86
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 94 DVVVLKERNFSDVIEN----NKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLA 149
D + +E +F + ++ +K + V+ + WCG C+ N V
Sbjct: 7 DGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL 66
Query: 150 KVDA--TEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIG 200
K+D E EL +Y V +PT+ F Y +DA K K+G
Sbjct: 67 KMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVL-AKVDA 153
+ + E N + V K VM++ YA WC + K+ ++V+L A V A
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTA 75
Query: 154 TEENELA--HEYDVQGFPTIYFFVDGQHKAYNGGR 186
+ ++A +V G PTI FF DGQ + + R
Sbjct: 76 NDAQDVALLKHLNVLGLPTILFF-DGQGQEHPQAR 109
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 446 IVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------ 499
+V + K V+L++YA WC + FE + + + V+ + + T N+
Sbjct: 26 LVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85
Query: 500 RAKSDGFPTILFF 512
G PTILFF
Sbjct: 86 HLNVLGLPTILFF 98
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDG-- 505
+ K V L + WC HC+ P KH + GV+ + + + H+ KS G
Sbjct: 25 KGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 506 FPTILFFPAGNKSFDPINVDVDRTVVALY 534
FP +L D DR V+ Y
Sbjct: 85 FPVVL--------------DTDRQVLDAY 99
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDG-- 505
+ K V L + WC HC+ P KH + GV+ + + + H+ KS G
Sbjct: 22 KGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 81
Query: 506 FPTILFFPAGNKSFDPINVDVDRTVVALY 534
FP +L D DR V+ Y
Sbjct: 82 FPVVL--------------DTDRQVLDAY 96
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 100 ERNFSDVIE----NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATE 155
++N S++I N +++ F+A WC C K + + L KVD +
Sbjct: 28 QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQ---KYYGKRIYLLKVDLDK 84
Query: 156 ENELAHEYDVQGFPTI 171
LA ++ V+ PTI
Sbjct: 85 NESLARKFSVKSLPTI 100
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 109 NNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDATEENELAHEYDVQGF 168
+K V+V+F A W G + L +V+ +VD + ++A E +V+
Sbjct: 19 GDKLVVVDFSATWSGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCM 74
Query: 169 PTIYFFVDGQHKAYNGGRTKDAI 191
PT FF GQ G K+ +
Sbjct: 75 PTFQFFKKGQKVGEFSGANKEKL 97
>pdb|1G7E|A Chain A, Nmr Structure Of N-Domain Of Erp29 Protein
Length = 122
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 93 KDVVVLKERNFSDVIENNKFVMVEFYAPW-CGHCQXXXXXXXXXXTELKSANESVVLAKV 151
K + L F VI +KFV+V+F + G Q E ++++ +++A+V
Sbjct: 4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ----DEFKRLAENSASSDDLLVAEV 59
Query: 152 DATEEN-----ELAHEY--DVQGFPTIYFFVDGQHK---AYNGGRTKDAIVTWIKKKIGP 201
++ EL+ +Y D + +P Y F DG + Y+G AI W+K G
Sbjct: 60 GISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLK---GQ 116
Query: 202 GIY 204
G+Y
Sbjct: 117 GVY 119
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 90 IDDKDVVVLKERNFSDVIENNKFVMVEFYAPW-CGHCQXXXXXXXXXXTELKSANESVVL 148
+ K + L F VI +KFV+V+F + G Q E ++++ +++
Sbjct: 2 VHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ----DEFKRLAENSASSDDLLV 57
Query: 149 AKVDATEEN-----ELAHEY--DVQGFPTIYFFVDGQHK---AYNGGRTKDAIVTWIKKK 198
A+V ++ EL+ +Y D + +P Y F DG + Y G AI W+K
Sbjct: 58 AEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLK-- 115
Query: 199 IGPGIY 204
G G+Y
Sbjct: 116 -GQGVY 120
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 477
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 477
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 440 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 477
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 94
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQXXXXXXXXXXTELKSANESVVLAKVDAT 154
V V F +++ + + F A WCG C+ E +V AKVDA
Sbjct: 22 VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDAD 77
Query: 155 EENELAHEYDVQGFPTIYFFVDGQ 178
+E+ + V PT G+
Sbjct: 78 NNSEIVSKCRVLQLPTFIIARSGK 101
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 92 DKDVVVLKERNFSDVIENNKFV--MVEFYAPWCGHCQXXXXXXXXXXTELK-----SANE 144
D VV L +FS V +V FY CG C+ LK A +
Sbjct: 22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQ 81
Query: 145 SVVLAKVDATEENELAHEYDVQGFPTIYFF 174
A V+ E +L +YD+ P ++FF
Sbjct: 82 IATAAAVNCASEVDLCRKYDINFVPRLFFF 111
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 447 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 477
VL + K VLL ++A WC C+A N+L+
Sbjct: 8 VLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 38
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 489
K VL+ +A WC +C+ P+ ++L K D +V+A
Sbjct: 42 KIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA 79
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 444 DEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA--KHLRGVD--SIVIAKMDGTTNEHH 499
+E+ D+ ++E +A W CQ+F P Y L+ + G++ + + + + +
Sbjct: 19 EELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYK 78
Query: 500 RAKS---DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQK 549
+ S PT++ F G ++ +D V+ + F ++N F + +
Sbjct: 79 VSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVS-WTFSEENVIREFNLNE 130
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 117 FYAPWCGHCQXXXXXXXXXXTELKSANESVVLA-KVDATEENELAHEYDVQGFPTIYFFV 175
F P C +C E A + +L V+A E E A +Y+V P I V
Sbjct: 141 FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV 200
Query: 176 DGQHKAYNGG 185
+G+ K G
Sbjct: 201 NGEDKVQFEG 210
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 25/73 (34%)
Query: 408 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ 467
T GED+L PIP+ G +++ LE + +C HC
Sbjct: 5 TEGEDYL-------VLDKPIPQEQSGKIEV------------------LEFFGYFCVHCH 39
Query: 468 AFEPTYNKLAKHL 480
F+P KL K L
Sbjct: 40 HFDPLLLKLGKAL 52
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 25/73 (34%)
Query: 408 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ 467
T GED+L PIP+ G +++ LE + +C HC
Sbjct: 4 TEGEDYL-------VLDKPIPQEQSGKIEV------------------LEFFGYFCVHCH 38
Query: 468 AFEPTYNKLAKHL 480
F+P KL K L
Sbjct: 39 HFDPLLLKLGKAL 51
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 117 FYAPWCGHCQXXXXXXXXXXTELKSANESVVLA-KVDATEENELAHEYDVQGFPTIYFFV 175
F P C +C E A + +L V+A E E A +Y+V P I V
Sbjct: 141 FVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV 200
Query: 176 DGQHK 180
+G+ +
Sbjct: 201 NGEDR 205
>pdb|3QPF|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QPF|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QRY|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QRY|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QSP|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
pdb|3QSP|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
Length = 426
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 222 VVLGYLNSL-----VGSESEVLADASRLEDDV-----NFYQTTNPDVAKIF 262
VVLGY+ + + V+ADA RL+D++ N+ TTN KI+
Sbjct: 235 VVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNYAYTTNSKGEKIY 285
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482
+E K ++++ A WCG C+ P + L+ G
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG 55
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 425 DP-IPETNDGDVKIVVGNNFD-EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482
DP +P K + G++F E +L K +L +APWC CQ P ++A
Sbjct: 13 DPTVPAQLQFSAKTLDGHDFHGESLL--GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE 70
Query: 483 VDSIVIAKMD 492
V + +A +D
Sbjct: 71 VTFVGVAGLD 80
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD 484
+ K + ++++A WCG C+ P +L + G D
Sbjct: 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD 63
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482
+E K +++ A WCG C+ P + L+ G
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAG 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,309,853
Number of Sequences: 62578
Number of extensions: 662560
Number of successful extensions: 2040
Number of sequences better than 100.0: 180
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1580
Number of HSP's gapped (non-prelim): 371
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)