Query 007882
Match_columns 586
No_of_seqs 452 out of 4031
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 16:36:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 8.7E-73 1.9E-77 557.3 42.1 447 91-542 23-474 (493)
2 PTZ00102 disulphide isomerase; 100.0 1.1E-58 2.4E-63 488.7 50.8 428 94-543 33-467 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 2.9E-58 6.2E-63 485.1 48.0 446 94-548 2-461 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 2.1E-34 4.5E-39 259.3 22.0 320 98-428 1-333 (375)
5 PF01216 Calsequestrin: Calseq 100.0 2.4E-29 5.1E-34 232.2 29.8 326 88-420 28-374 (383)
6 KOG4277 Uncharacterized conser 100.0 1.4E-29 3E-34 227.4 18.2 297 109-417 42-354 (468)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 6.5E-22 1.4E-26 161.6 12.6 101 92-195 8-113 (113)
8 KOG0191 Thioredoxin/protein di 99.9 1.4E-20 3E-25 191.2 20.9 312 100-518 37-357 (383)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 6.4E-21 1.4E-25 155.2 12.4 98 94-194 2-100 (101)
10 cd03065 PDI_b_Calsequestrin_N 99.8 3.2E-20 6.9E-25 152.4 13.4 104 93-199 9-119 (120)
11 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.8E-20 8.2E-25 152.6 13.0 102 94-195 2-108 (108)
12 KOG0910 Thioredoxin-like prote 99.8 1.9E-20 4.2E-25 154.6 10.9 105 93-200 43-149 (150)
13 PF00085 Thioredoxin: Thioredo 99.8 1.9E-19 4.1E-24 147.6 14.8 101 95-198 1-103 (103)
14 cd02994 PDI_a_TMX PDIa family, 99.8 1E-19 2.2E-24 148.3 12.9 100 94-197 2-101 (101)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.6E-19 3.6E-24 147.9 12.2 99 94-195 2-104 (104)
16 cd03005 PDI_a_ERp46 PDIa famil 99.8 4.7E-19 1E-23 144.9 12.9 101 94-195 1-102 (102)
17 PTZ00443 Thioredoxin domain-co 99.8 1.4E-18 3E-23 159.2 16.2 105 93-200 30-140 (224)
18 COG3118 Thioredoxin domain-con 99.8 4.3E-19 9.3E-24 162.8 12.2 106 93-201 23-132 (304)
19 PF13848 Thioredoxin_6: Thiore 99.8 1.3E-18 2.8E-23 159.1 15.4 179 227-412 1-184 (184)
20 PHA02278 thioredoxin-like prot 99.8 2.1E-18 4.5E-23 138.6 12.4 93 99-194 3-100 (103)
21 cd02999 PDI_a_ERp44_like PDIa 99.8 1.1E-18 2.4E-23 140.6 10.8 84 108-195 16-100 (100)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 2.5E-18 5.5E-23 141.8 12.6 99 97-197 8-110 (111)
23 cd02954 DIM1 Dim1 family; Dim1 99.8 1.6E-18 3.5E-23 139.6 10.8 89 100-191 2-93 (114)
24 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.5E-18 5.4E-23 142.4 12.1 98 95-195 2-108 (109)
25 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.6E-18 5.6E-23 140.4 11.2 101 432-537 8-113 (113)
26 PRK10996 thioredoxin 2; Provis 99.8 8E-18 1.7E-22 144.5 14.6 104 93-199 35-139 (139)
27 KOG0910 Thioredoxin-like prote 99.8 8.4E-19 1.8E-23 144.9 7.9 105 433-542 43-149 (150)
28 PRK09381 trxA thioredoxin; Pro 99.8 9.1E-18 2E-22 138.8 14.1 104 93-199 3-108 (109)
29 cd02997 PDI_a_PDIR PDIa family 99.8 5.9E-18 1.3E-22 138.9 12.7 101 94-195 1-104 (104)
30 cd03001 PDI_a_P5 PDIa family, 99.8 7.1E-18 1.5E-22 138.1 12.6 99 94-195 1-102 (103)
31 cd02948 TRX_NDPK TRX domain, T 99.8 9E-18 1.9E-22 136.4 13.0 96 98-197 5-101 (102)
32 cd03000 PDI_a_TMX3 PDIa family 99.8 6.8E-18 1.5E-22 138.0 12.3 97 101-198 7-103 (104)
33 cd03007 PDI_a_ERp29_N PDIa fam 99.8 4E-18 8.7E-23 137.8 10.6 98 94-198 2-115 (116)
34 cd02985 TRX_CDSP32 TRX family, 99.8 9.5E-18 2.1E-22 136.4 12.9 94 99-197 2-101 (103)
35 cd02956 ybbN ybbN protein fami 99.8 9E-18 1.9E-22 135.4 12.6 91 102-195 2-95 (96)
36 cd02993 PDI_a_APS_reductase PD 99.8 7.1E-18 1.5E-22 138.9 11.9 100 94-195 2-109 (109)
37 TIGR01126 pdi_dom protein disu 99.8 1.1E-17 2.4E-22 136.8 12.2 100 98-198 1-101 (102)
38 PF00085 Thioredoxin: Thioredo 99.7 1.1E-17 2.5E-22 137.0 10.6 101 435-540 1-103 (103)
39 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 1.7E-17 3.8E-22 134.9 10.6 98 434-537 2-101 (101)
40 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 1.6E-17 3.6E-22 136.0 9.5 99 434-537 2-104 (104)
41 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 3.2E-17 7E-22 134.5 11.0 103 434-537 1-104 (104)
42 KOG0191 Thioredoxin/protein di 99.7 2.4E-16 5.2E-21 160.2 19.5 204 324-544 49-255 (383)
43 cd02965 HyaE HyaE family; HyaE 99.7 5E-17 1.1E-21 129.9 11.3 97 93-192 10-109 (111)
44 cd02962 TMX2 TMX2 family; comp 99.7 1.2E-16 2.7E-21 137.3 14.4 90 93-184 28-126 (152)
45 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 6.3E-17 1.4E-21 132.8 11.7 99 95-195 2-104 (104)
46 cd02998 PDI_a_ERp38 PDIa famil 99.7 5.9E-17 1.3E-21 133.2 11.3 100 95-195 2-105 (105)
47 cd02996 PDI_a_ERp44 PDIa famil 99.7 5.6E-17 1.2E-21 133.7 10.1 101 434-537 2-108 (108)
48 cd03065 PDI_b_Calsequestrin_N 99.7 5.6E-17 1.2E-21 133.2 9.9 105 432-540 8-118 (120)
49 cd02961 PDI_a_family Protein D 99.7 1.3E-16 2.8E-21 130.1 10.4 98 97-195 2-101 (101)
50 cd02992 PDI_a_QSOX PDIa family 99.7 3.6E-16 7.9E-21 129.3 12.6 99 94-192 2-109 (114)
51 cd02957 Phd_like Phosducin (Ph 99.7 3.9E-16 8.4E-21 129.4 12.5 87 93-184 4-94 (113)
52 TIGR01068 thioredoxin thioredo 99.7 5.5E-16 1.2E-20 126.4 13.1 99 98-199 1-101 (101)
53 KOG0907 Thioredoxin [Posttrans 99.7 3.6E-16 7.8E-21 125.4 11.1 84 109-197 20-104 (106)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.7 7.3E-16 1.6E-20 127.1 13.2 87 94-184 5-93 (113)
55 cd02950 TxlA TRX-like protein 99.7 5.6E-16 1.2E-20 133.3 13.0 98 100-200 10-111 (142)
56 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.3E-16 5.1E-21 130.5 10.1 102 435-538 2-109 (109)
57 cd02953 DsbDgamma DsbD gamma f 99.7 2.9E-16 6.3E-21 128.5 10.5 92 101-195 2-103 (104)
58 COG3118 Thioredoxin domain-con 99.7 2.5E-16 5.3E-21 144.8 11.0 106 433-543 23-132 (304)
59 PLN00410 U5 snRNP protein, DIM 99.7 8E-16 1.7E-20 129.1 13.1 98 99-199 10-120 (142)
60 cd02984 TRX_PICOT TRX domain, 99.7 6.8E-16 1.5E-20 124.7 12.0 94 99-195 1-96 (97)
61 PHA02278 thioredoxin-like prot 99.7 1.2E-16 2.7E-21 128.3 7.5 90 441-536 5-100 (103)
62 PRK09381 trxA thioredoxin; Pro 99.7 4.1E-16 8.9E-21 128.9 10.7 104 433-541 3-108 (109)
63 cd02994 PDI_a_TMX PDIa family, 99.7 3.5E-16 7.6E-21 127.3 10.2 98 434-539 2-101 (101)
64 cd02963 TRX_DnaJ TRX domain, D 99.7 2.9E-16 6.3E-21 129.5 8.6 100 436-539 7-110 (111)
65 TIGR00424 APS_reduc 5'-adenyly 99.7 1E-15 2.2E-20 154.3 13.8 106 91-198 349-462 (463)
66 TIGR02187 GlrX_arch Glutaredox 99.6 1.3E-14 2.7E-19 135.1 19.2 182 110-301 19-214 (215)
67 cd02993 PDI_a_APS_reductase PD 99.6 1E-15 2.2E-20 126.1 10.4 101 434-537 2-109 (109)
68 PLN02309 5'-adenylylsulfate re 99.6 1.6E-15 3.4E-20 153.0 13.9 107 90-198 342-456 (457)
69 cd02956 ybbN ybbN protein fami 99.6 8.8E-16 1.9E-20 123.7 9.8 93 441-538 1-96 (96)
70 cd03005 PDI_a_ERp46 PDIa famil 99.6 8.1E-16 1.7E-20 125.6 9.6 98 435-537 2-102 (102)
71 cd02954 DIM1 Dim1 family; Dim1 99.6 2.7E-16 5.8E-21 126.8 6.5 78 440-519 2-82 (114)
72 PTZ00443 Thioredoxin domain-co 99.6 7.6E-16 1.6E-20 141.2 10.2 109 432-545 29-143 (224)
73 PTZ00051 thioredoxin; Provisio 99.6 1.8E-15 3.9E-20 122.4 11.3 89 99-192 7-96 (98)
74 cd02999 PDI_a_ERp44_like PDIa 99.6 5.7E-16 1.2E-20 124.8 7.9 89 442-537 8-100 (100)
75 cd02986 DLP Dim1 family, Dim1- 99.6 2E-15 4.3E-20 120.4 10.8 78 100-180 2-81 (114)
76 cd03001 PDI_a_P5 PDIa family, 99.6 1.2E-15 2.6E-20 124.9 9.7 99 435-537 2-102 (103)
77 cd02998 PDI_a_ERp38 PDIa famil 99.6 2.5E-15 5.4E-20 123.5 11.0 101 435-537 2-105 (105)
78 cd02949 TRX_NTR TRX domain, no 99.6 4.3E-15 9.4E-20 119.6 12.1 87 107-196 10-97 (97)
79 TIGR01126 pdi_dom protein disu 99.6 3.1E-15 6.8E-20 122.2 10.1 100 438-541 1-102 (102)
80 cd03007 PDI_a_ERp29_N PDIa fam 99.6 2.7E-15 5.8E-20 121.5 9.1 99 434-540 2-115 (116)
81 cd02985 TRX_CDSP32 TRX family, 99.6 2.3E-15 4.9E-20 122.4 8.9 94 440-540 3-102 (103)
82 cd02997 PDI_a_PDIR PDIa family 99.6 5.2E-15 1.1E-19 121.3 10.2 99 435-537 2-104 (104)
83 cd02948 TRX_NDPK TRX domain, T 99.6 4.2E-15 9.1E-20 120.7 9.3 96 438-539 5-101 (102)
84 KOG0907 Thioredoxin [Posttrans 99.6 3.7E-15 8E-20 119.6 8.3 85 449-540 19-105 (106)
85 KOG0190 Protein disulfide isom 99.6 4.5E-15 9.7E-20 148.3 10.5 109 432-544 24-135 (493)
86 PRK10996 thioredoxin 2; Provis 99.6 7.6E-15 1.6E-19 126.0 10.4 104 432-541 34-139 (139)
87 cd02975 PfPDO_like_N Pyrococcu 99.6 1.6E-14 3.4E-19 119.2 11.6 93 103-199 15-110 (113)
88 TIGR02187 GlrX_arch Glutaredox 99.6 4.5E-14 9.8E-19 131.3 16.1 177 334-539 35-214 (215)
89 PTZ00102 disulphide isomerase; 99.6 1.4E-14 3E-19 153.2 14.3 116 87-203 351-469 (477)
90 cd02987 Phd_like_Phd Phosducin 99.6 2.3E-14 4.9E-19 127.5 13.3 88 92-184 61-153 (175)
91 cd02992 PDI_a_QSOX PDIa family 99.6 1.5E-14 3.2E-19 119.7 10.7 102 434-535 2-110 (114)
92 TIGR01295 PedC_BrcD bacterioci 99.6 3E-14 6.6E-19 118.7 12.6 98 93-195 6-120 (122)
93 cd02957 Phd_like Phosducin (Ph 99.6 1.1E-14 2.4E-19 120.6 9.0 88 433-526 4-94 (113)
94 cd02965 HyaE HyaE family; HyaE 99.6 1.7E-14 3.7E-19 115.4 9.0 95 434-534 11-109 (111)
95 TIGR01068 thioredoxin thioredo 99.6 2.1E-14 4.6E-19 117.0 9.9 98 439-541 2-101 (101)
96 cd02951 SoxW SoxW family; SoxW 99.6 4.7E-14 1E-18 119.6 12.3 97 101-200 4-120 (125)
97 KOG1731 FAD-dependent sulfhydr 99.6 4.6E-14 9.9E-19 140.1 14.0 223 93-317 39-290 (606)
98 PRK15412 thiol:disulfide inter 99.6 1.1E-13 2.4E-18 125.5 15.4 86 109-200 67-177 (185)
99 KOG0908 Thioredoxin-like prote 99.5 3E-14 6.4E-19 126.2 10.3 99 99-202 8-109 (288)
100 cd03000 PDI_a_TMX3 PDIa family 99.5 4E-14 8.7E-19 115.6 10.3 94 441-540 7-103 (104)
101 cd02962 TMX2 TMX2 family; comp 99.5 2.8E-14 6E-19 122.8 9.7 87 432-519 27-122 (152)
102 PRK14018 trifunctional thiored 99.5 9.3E-14 2E-18 142.1 14.9 88 109-198 55-172 (521)
103 cd02947 TRX_family TRX family; 99.5 9.7E-14 2.1E-18 111.0 12.0 90 102-195 2-92 (93)
104 cd02950 TxlA TRX-like protein 99.5 7.6E-14 1.6E-18 120.1 12.0 98 441-544 11-113 (142)
105 TIGR00424 APS_reduc 5'-adenyly 99.5 4E-14 8.6E-19 142.9 11.4 105 432-539 350-461 (463)
106 cd02987 Phd_like_Phd Phosducin 99.5 4.1E-14 9E-19 125.8 9.1 130 407-540 37-174 (175)
107 cd02989 Phd_like_TxnDC9 Phosdu 99.5 7.8E-14 1.7E-18 115.0 9.7 98 433-537 4-112 (113)
108 PLN02309 5'-adenylylsulfate re 99.5 7.4E-14 1.6E-18 141.0 11.2 106 432-540 344-456 (457)
109 TIGR02738 TrbB type-F conjugat 99.5 5.1E-13 1.1E-17 115.4 13.9 87 109-198 49-152 (153)
110 cd02961 PDI_a_family Protein D 99.5 1.1E-13 2.4E-18 112.6 9.0 98 437-537 2-101 (101)
111 PTZ00062 glutaredoxin; Provisi 99.5 3.8E-13 8.2E-18 121.2 13.1 113 99-224 5-118 (204)
112 cd02949 TRX_NTR TRX domain, no 99.5 2.2E-13 4.7E-18 109.7 9.2 91 443-538 5-97 (97)
113 PRK03147 thiol-disulfide oxido 99.5 1.1E-12 2.3E-17 118.5 14.3 88 109-198 60-171 (173)
114 PLN00410 U5 snRNP protein, DIM 99.5 1.5E-13 3.2E-18 115.5 8.0 97 440-541 11-120 (142)
115 cd02988 Phd_like_VIAF Phosduci 99.5 1.8E-13 3.9E-18 123.2 9.1 126 409-540 60-191 (192)
116 cd02952 TRP14_like Human TRX-r 99.5 4.3E-13 9.3E-18 109.8 10.3 77 99-178 8-101 (119)
117 cd02953 DsbDgamma DsbD gamma f 99.5 2.2E-13 4.8E-18 111.3 8.7 92 441-538 2-104 (104)
118 cd02984 TRX_PICOT TRX domain, 99.5 2.2E-13 4.8E-18 109.9 8.4 92 440-537 2-96 (97)
119 TIGR01295 PedC_BrcD bacterioci 99.5 3.3E-13 7.1E-18 112.5 9.2 98 435-538 8-121 (122)
120 cd02988 Phd_like_VIAF Phosduci 99.5 7.6E-13 1.6E-17 119.2 12.2 86 92-184 81-170 (192)
121 KOG4277 Uncharacterized conser 99.4 7.5E-14 1.6E-18 126.6 5.5 93 449-545 41-136 (468)
122 TIGR00411 redox_disulf_1 small 99.4 8.9E-13 1.9E-17 102.7 11.0 80 113-198 2-81 (82)
123 cd02982 PDI_b'_family Protein 99.4 6.1E-13 1.3E-17 108.7 10.4 87 109-198 11-102 (103)
124 cd02986 DLP Dim1 family, Dim1- 99.4 2.8E-13 6.1E-18 108.1 7.7 76 441-518 3-81 (114)
125 KOG0908 Thioredoxin-like prote 99.4 4E-13 8.6E-18 119.2 8.9 104 435-545 3-110 (288)
126 cd03008 TryX_like_RdCVF Trypar 99.4 8.4E-13 1.8E-17 112.5 10.5 76 109-184 24-130 (146)
127 PTZ00051 thioredoxin; Provisio 99.4 1.3E-12 2.8E-17 105.6 8.8 92 435-534 2-96 (98)
128 cd02975 PfPDO_like_N Pyrococcu 99.4 9.6E-13 2.1E-17 108.6 8.0 94 443-541 15-110 (113)
129 PRK13728 conjugal transfer pro 99.4 5.5E-12 1.2E-16 110.6 12.6 83 114-201 73-173 (181)
130 cd03072 PDI_b'_ERp44 PDIb' fam 99.4 1.4E-12 3.1E-17 106.5 8.1 107 307-417 1-111 (111)
131 KOG0912 Thiol-disulfide isomer 99.4 8.6E-13 1.9E-17 120.3 6.9 104 439-545 2-110 (375)
132 cd02959 ERp19 Endoplasmic reti 99.4 1.6E-12 3.5E-17 107.7 7.0 97 100-198 9-112 (117)
133 TIGR01626 ytfJ_HI0045 conserve 99.3 1.3E-11 2.9E-16 109.0 13.0 81 109-195 58-176 (184)
134 cd03009 TryX_like_TryX_NRX Try 99.3 5.7E-12 1.2E-16 107.8 10.3 74 109-182 17-115 (131)
135 TIGR00385 dsbE periplasmic pro 99.3 2.6E-11 5.6E-16 108.9 13.4 86 108-199 61-171 (173)
136 PTZ00062 glutaredoxin; Provisi 99.3 6.2E-12 1.4E-16 113.4 9.2 92 439-543 5-96 (204)
137 PF13905 Thioredoxin_8: Thiore 99.3 1.5E-11 3.3E-16 98.7 10.4 68 110-178 1-94 (95)
138 TIGR01130 ER_PDI_fam protein d 99.3 1.6E-09 3.5E-14 114.3 27.9 305 208-546 7-332 (462)
139 cd02964 TryX_like_family Trypa 99.3 1.4E-11 3E-16 105.4 9.8 76 109-184 16-117 (132)
140 cd02947 TRX_family TRX family; 99.3 1.7E-11 3.7E-16 97.8 9.1 89 442-537 2-92 (93)
141 cd03010 TlpA_like_DsbE TlpA-li 99.3 3.9E-11 8.4E-16 102.1 10.6 78 109-191 24-126 (127)
142 cd02952 TRP14_like Human TRX-r 99.3 2E-11 4.2E-16 100.1 8.3 92 440-537 9-118 (119)
143 cd02951 SoxW SoxW family; SoxW 99.2 2E-11 4.3E-16 103.5 8.2 94 443-542 6-120 (125)
144 TIGR00412 redox_disulf_2 small 99.2 4.4E-11 9.6E-16 90.7 9.1 73 114-195 2-75 (76)
145 cd02959 ERp19 Endoplasmic reti 99.2 1.4E-11 3.1E-16 102.0 6.6 91 448-538 16-110 (117)
146 cd02955 SSP411 TRX domain, SSP 99.2 7.7E-11 1.7E-15 97.8 10.7 79 99-180 4-94 (124)
147 TIGR02740 TraF-like TraF-like 99.2 9.5E-11 2.1E-15 111.9 12.1 89 109-200 165-265 (271)
148 PHA02125 thioredoxin-like prot 99.2 1.6E-10 3.4E-15 87.7 9.7 68 114-193 2-71 (75)
149 PF13098 Thioredoxin_2: Thiore 99.2 9.1E-11 2E-15 97.4 8.8 84 109-195 4-112 (112)
150 cd02982 PDI_b'_family Protein 99.2 1.4E-10 2.9E-15 94.7 9.3 85 451-540 12-102 (103)
151 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 1.9E-10 4E-15 97.3 10.3 92 97-193 7-120 (123)
152 PRK00293 dipZ thiol:disulfide 99.2 1.4E-10 3E-15 123.0 11.5 97 99-199 459-570 (571)
153 PTZ00056 glutathione peroxidas 99.1 2.5E-10 5.4E-15 104.2 10.8 91 109-201 38-180 (199)
154 PLN02399 phospholipid hydroper 99.1 4.8E-10 1E-14 103.8 11.9 104 95-200 84-235 (236)
155 KOG1731 FAD-dependent sulfhydr 99.1 8.1E-11 1.7E-15 117.4 6.4 113 430-542 36-154 (606)
156 TIGR00411 redox_disulf_1 small 99.1 2.2E-10 4.7E-15 89.1 7.5 78 454-540 2-81 (82)
157 cd02983 P5_C P5 family, C-term 99.1 7.3E-10 1.6E-14 93.3 10.9 113 305-422 2-123 (130)
158 PLN02919 haloacid dehalogenase 99.1 4.1E-10 8.9E-15 127.6 11.8 90 109-200 419-537 (1057)
159 cd03012 TlpA_like_DipZ_like Tl 99.1 6.4E-10 1.4E-14 94.3 9.8 75 109-185 22-125 (126)
160 PF08534 Redoxin: Redoxin; In 99.1 1.2E-09 2.6E-14 95.5 11.4 78 108-187 26-136 (146)
161 PLN02412 probable glutathione 99.1 7.6E-10 1.6E-14 98.4 10.1 90 109-200 28-165 (167)
162 cd02967 mauD Methylamine utili 99.1 6.9E-10 1.5E-14 92.4 9.2 66 109-177 20-106 (114)
163 TIGR00412 redox_disulf_2 small 99.1 3.6E-10 7.7E-15 85.8 6.5 73 455-537 2-75 (76)
164 cd02966 TlpA_like_family TlpA- 99.1 8.5E-10 1.8E-14 91.9 9.3 74 109-184 18-116 (116)
165 cd02973 TRX_GRX_like Thioredox 99.0 6.6E-10 1.4E-14 82.5 7.1 57 113-173 2-58 (67)
166 PF13848 Thioredoxin_6: Thiore 99.0 3.3E-08 7.2E-13 90.1 19.7 166 127-301 7-184 (184)
167 TIGR02540 gpx7 putative glutat 99.0 2.8E-09 6E-14 93.7 11.4 88 109-198 21-152 (153)
168 PRK11509 hydrogenase-1 operon 99.0 7.6E-09 1.6E-13 85.6 12.4 107 95-203 19-128 (132)
169 cd00340 GSH_Peroxidase Glutath 99.0 2.8E-09 6.1E-14 93.5 9.4 83 109-194 21-151 (152)
170 TIGR02661 MauD methylamine deh 99.0 4.3E-09 9.3E-14 95.7 10.9 86 109-198 73-178 (189)
171 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 5.5E-09 1.2E-13 81.6 9.6 76 109-191 11-86 (89)
172 PF01216 Calsequestrin: Calseq 98.9 7.7E-07 1.7E-11 84.0 24.2 312 203-548 36-375 (383)
173 PRK00293 dipZ thiol:disulfide 98.9 3.5E-09 7.5E-14 112.5 9.8 98 440-541 460-570 (571)
174 PHA02125 thioredoxin-like prot 98.9 2.7E-09 5.7E-14 80.9 6.5 67 455-535 2-71 (75)
175 PRK14018 trifunctional thiored 98.9 6E-09 1.3E-13 107.2 10.8 88 448-539 53-171 (521)
176 TIGR02738 TrbB type-F conjugat 98.9 7.2E-09 1.6E-13 89.7 9.3 86 451-540 50-152 (153)
177 cd03066 PDI_b_Calsequestrin_mi 98.9 1.3E-08 2.8E-13 82.3 9.9 97 203-303 2-101 (102)
178 cd03073 PDI_b'_ERp72_ERp57 PDI 98.9 5.2E-09 1.1E-13 85.4 7.3 102 307-414 1-111 (111)
179 COG2143 Thioredoxin-related pr 98.9 5.8E-08 1.3E-12 80.1 13.1 105 108-215 40-165 (182)
180 KOG2501 Thioredoxin, nucleored 98.9 5.6E-09 1.2E-13 87.8 7.3 75 109-183 32-132 (157)
181 PF13098 Thioredoxin_2: Thiore 98.9 1.1E-09 2.4E-14 90.8 2.9 84 449-537 3-112 (112)
182 TIGR02740 TraF-like TraF-like 98.9 7.4E-09 1.6E-13 99.0 8.6 89 450-542 165-265 (271)
183 cd03069 PDI_b_ERp57 PDIb famil 98.9 1.6E-08 3.5E-13 82.0 9.3 95 203-302 2-103 (104)
184 cd02958 UAS UAS family; UAS is 98.8 5.2E-08 1.1E-12 80.8 12.4 94 103-199 10-111 (114)
185 cd02981 PDI_b_family Protein D 98.8 2.3E-08 4.9E-13 80.4 9.7 95 204-302 2-97 (97)
186 cd02955 SSP411 TRX domain, SSP 98.8 1.6E-08 3.5E-13 84.0 8.5 75 442-519 7-95 (124)
187 PTZ00256 glutathione peroxidas 98.8 3.6E-08 7.9E-13 89.2 10.6 89 109-199 39-181 (183)
188 PF13899 Thioredoxin_7: Thiore 98.8 3.3E-08 7.2E-13 76.5 8.4 70 102-175 9-81 (82)
189 cd02969 PRX_like1 Peroxiredoxi 98.8 8.1E-08 1.8E-12 86.2 12.1 91 109-202 24-155 (171)
190 cd03008 TryX_like_RdCVF Trypar 98.8 2.6E-08 5.6E-13 85.1 7.6 69 450-518 24-126 (146)
191 PRK15412 thiol:disulfide inter 98.7 3.8E-08 8.2E-13 89.3 8.8 85 449-541 66-176 (185)
192 PF13905 Thioredoxin_8: Thiore 98.7 4.5E-08 9.7E-13 78.4 8.3 66 451-516 1-93 (95)
193 cd02960 AGR Anterior Gradient 98.7 2.2E-08 4.8E-13 82.9 6.5 81 102-186 15-100 (130)
194 PRK03147 thiol-disulfide oxido 98.7 8.5E-08 1.8E-12 86.4 10.8 101 434-539 45-170 (173)
195 KOG0913 Thiol-disulfide isomer 98.7 3.3E-09 7.1E-14 94.0 1.2 104 94-201 25-128 (248)
196 TIGR00385 dsbE periplasmic pro 98.7 7E-08 1.5E-12 86.6 9.4 85 449-541 61-171 (173)
197 cd03009 TryX_like_TryX_NRX Try 98.7 4.9E-08 1.1E-12 83.4 8.0 69 450-518 17-113 (131)
198 cd02964 TryX_like_family Trypa 98.7 4.9E-08 1.1E-12 83.4 7.9 68 450-517 16-112 (132)
199 cd03010 TlpA_like_DsbE TlpA-li 98.7 3.4E-08 7.3E-13 83.9 6.7 77 450-533 24-126 (127)
200 cd03068 PDI_b_ERp72 PDIb famil 98.7 1.3E-07 2.9E-12 76.7 9.4 96 203-302 2-107 (107)
201 cd02973 TRX_GRX_like Thioredox 98.7 4.8E-08 1E-12 72.4 6.2 55 454-511 2-58 (67)
202 COG4232 Thiol:disulfide interc 98.7 1.7E-07 3.8E-12 95.4 12.1 96 102-199 464-568 (569)
203 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 8.8E-08 1.9E-12 80.8 8.5 91 437-535 7-120 (123)
204 cd03017 PRX_BCP Peroxiredoxin 98.7 1.8E-07 3.9E-12 81.0 10.1 84 109-194 22-138 (140)
205 PRK11509 hydrogenase-1 operon 98.6 2.8E-07 6.1E-12 76.4 9.6 105 435-544 19-127 (132)
206 PLN02919 haloacid dehalogenase 98.6 1.3E-07 2.8E-12 107.7 9.9 89 450-542 419-537 (1057)
207 smart00594 UAS UAS domain. 98.6 3.8E-07 8.3E-12 76.4 10.2 89 104-195 21-121 (122)
208 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 3.5E-07 7.5E-12 77.3 10.0 67 109-177 24-118 (124)
209 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.7E-07 3.7E-12 73.2 6.7 73 452-534 13-87 (89)
210 cd02967 mauD Methylamine utili 98.6 1.4E-07 3E-12 78.5 6.5 33 450-482 20-52 (114)
211 cd02960 AGR Anterior Gradient 98.6 3.5E-07 7.7E-12 75.8 8.7 76 442-519 11-94 (130)
212 PRK00522 tpx lipid hydroperoxi 98.5 7.2E-07 1.6E-11 79.4 11.1 66 109-178 43-142 (167)
213 COG0526 TrxA Thiol-disulfide i 98.5 3.9E-07 8.4E-12 76.2 8.9 66 110-178 32-100 (127)
214 cd03015 PRX_Typ2cys Peroxiredo 98.5 9.1E-07 2E-11 79.4 11.4 88 109-198 28-156 (173)
215 cd02958 UAS UAS family; UAS is 98.5 5.7E-07 1.2E-11 74.6 9.2 89 448-541 14-111 (114)
216 cd02966 TlpA_like_family TlpA- 98.5 3E-07 6.6E-12 76.3 7.6 79 438-518 7-111 (116)
217 KOG0914 Thioredoxin-like prote 98.5 2E-07 4.3E-12 81.5 6.3 83 95-179 126-217 (265)
218 cd02970 PRX_like2 Peroxiredoxi 98.5 9E-07 1.9E-11 77.5 10.5 45 110-156 24-68 (149)
219 TIGR03137 AhpC peroxiredoxin. 98.5 9.9E-07 2.2E-11 80.1 10.8 86 109-196 30-153 (187)
220 TIGR02196 GlrX_YruB Glutaredox 98.5 6.7E-07 1.5E-11 67.6 8.2 69 114-196 2-74 (74)
221 PRK09437 bcp thioredoxin-depen 98.5 1.6E-06 3.4E-11 76.4 11.7 81 109-191 29-145 (154)
222 COG4232 Thiol:disulfide interc 98.5 3.8E-07 8.2E-12 93.0 7.9 103 436-541 457-568 (569)
223 PRK13728 conjugal transfer pro 98.4 8.6E-07 1.9E-11 78.1 8.6 85 455-543 73-173 (181)
224 cd03014 PRX_Atyp2cys Peroxired 98.4 1.3E-06 2.9E-11 75.8 9.8 72 109-184 25-128 (143)
225 KOG0913 Thiol-disulfide isomer 98.4 1.1E-07 2.5E-12 84.4 2.8 100 434-541 25-126 (248)
226 PF13899 Thioredoxin_7: Thiore 98.4 2.7E-07 5.8E-12 71.3 4.5 64 448-513 14-81 (82)
227 PRK10606 btuE putative glutath 98.4 2.6E-06 5.6E-11 76.2 11.0 115 109-235 24-170 (183)
228 cd01659 TRX_superfamily Thiore 98.4 1.2E-06 2.5E-11 64.2 7.3 60 114-177 1-63 (69)
229 PRK10382 alkyl hydroperoxide r 98.4 4.5E-06 9.7E-11 75.2 12.1 88 109-198 30-155 (187)
230 PRK13190 putative peroxiredoxi 98.4 2.9E-06 6.2E-11 77.9 10.9 89 109-199 26-154 (202)
231 smart00594 UAS UAS domain. 98.4 2.5E-06 5.3E-11 71.5 9.2 95 441-537 14-121 (122)
232 cd03012 TlpA_like_DipZ_like Tl 98.4 1.1E-06 2.3E-11 74.4 7.0 68 450-518 22-119 (126)
233 cd02968 SCO SCO (an acronym fo 98.4 1.7E-06 3.7E-11 75.0 8.4 46 109-154 21-68 (142)
234 cd03018 PRX_AhpE_like Peroxire 98.3 4.7E-06 1E-10 72.9 10.8 73 111-185 29-133 (149)
235 PF07912 ERp29_N: ERp29, N-ter 98.3 2.8E-05 6E-10 62.3 13.5 106 93-200 4-120 (126)
236 cd02971 PRX_family Peroxiredox 98.3 4.6E-06 1E-10 72.1 9.7 76 109-186 21-130 (140)
237 PF02114 Phosducin: Phosducin; 98.3 3.3E-06 7.3E-11 79.9 9.3 112 432-546 124-243 (265)
238 TIGR02661 MauD methylamine deh 98.3 3.7E-06 8E-11 76.5 9.2 82 450-538 73-176 (189)
239 TIGR02200 GlrX_actino Glutared 98.3 3.5E-06 7.7E-11 64.2 7.7 69 114-195 2-75 (77)
240 KOG0914 Thioredoxin-like prote 98.3 1.2E-06 2.5E-11 76.8 5.4 87 432-519 123-219 (265)
241 TIGR03143 AhpF_homolog putativ 98.3 1.6E-05 3.4E-10 85.3 15.3 182 324-537 367-554 (555)
242 PRK15000 peroxidase; Provision 98.3 8E-06 1.7E-10 74.7 11.2 87 109-197 33-160 (200)
243 PLN02399 phospholipid hydroper 98.2 5.4E-06 1.2E-10 77.1 9.2 88 450-541 98-234 (236)
244 PF13728 TraF: F plasmid trans 98.2 1.2E-05 2.6E-10 74.1 11.1 80 110-194 120-213 (215)
245 PF08534 Redoxin: Redoxin; In 98.2 3.7E-06 7.9E-11 73.3 7.3 80 438-518 16-128 (146)
246 PF14595 Thioredoxin_9: Thiore 98.2 5.3E-06 1.1E-10 69.6 7.9 75 110-188 41-119 (129)
247 PTZ00056 glutathione peroxidas 98.2 5.4E-06 1.2E-10 75.8 8.3 43 450-493 38-80 (199)
248 cd03016 PRX_1cys Peroxiredoxin 98.2 1.9E-05 4.2E-10 72.6 11.1 85 112-198 28-153 (203)
249 PRK13189 peroxiredoxin; Provis 98.1 2.3E-05 4.9E-10 73.0 11.0 88 109-198 34-162 (222)
250 PF02114 Phosducin: Phosducin; 98.1 1.7E-05 3.7E-10 75.1 10.1 101 93-198 125-237 (265)
251 PTZ00137 2-Cys peroxiredoxin; 98.1 2.7E-05 5.8E-10 73.5 10.9 88 109-198 97-224 (261)
252 TIGR01626 ytfJ_HI0045 conserve 98.1 1.2E-05 2.6E-10 71.4 8.0 91 442-536 51-175 (184)
253 PLN02412 probable glutathione 98.1 1E-05 2.2E-10 72.0 7.6 88 450-541 28-164 (167)
254 PRK13599 putative peroxiredoxi 98.1 3.5E-05 7.6E-10 71.2 11.1 88 109-198 27-155 (215)
255 PF13192 Thioredoxin_3: Thiore 98.1 5E-05 1.1E-09 57.5 9.9 72 116-196 4-76 (76)
256 cd00340 GSH_Peroxidase Glutath 98.1 1.1E-05 2.3E-10 70.8 7.0 42 450-493 21-62 (152)
257 PF03190 Thioredox_DsbH: Prote 98.0 4.4E-05 9.6E-10 65.8 10.3 82 96-180 23-116 (163)
258 PF06110 DUF953: Eukaryotic pr 98.0 1.6E-05 3.4E-10 65.0 6.9 73 442-516 7-100 (119)
259 TIGR02180 GRX_euk Glutaredoxin 98.0 1.1E-05 2.4E-10 62.7 5.8 58 114-178 1-63 (84)
260 PF06110 DUF953: Eukaryotic pr 98.0 3.6E-05 7.7E-10 62.9 8.8 74 101-177 6-99 (119)
261 PRK13191 putative peroxiredoxi 98.0 3.5E-05 7.7E-10 71.2 10.0 88 109-198 32-160 (215)
262 cd02991 UAS_ETEA UAS family, E 98.0 0.0001 2.2E-09 60.6 11.2 91 105-199 12-113 (116)
263 COG0526 TrxA Thiol-disulfide i 98.0 2E-05 4.4E-10 65.6 7.2 66 451-518 32-102 (127)
264 KOG1672 ATP binding protein [P 98.0 1.6E-05 3.5E-10 68.7 6.4 84 95-182 68-152 (211)
265 cd02969 PRX_like1 Peroxiredoxi 98.0 3.5E-05 7.7E-10 69.0 8.9 92 450-542 24-153 (171)
266 TIGR02196 GlrX_YruB Glutaredox 97.9 1.8E-05 3.8E-10 59.7 5.5 66 455-537 2-73 (74)
267 KOG2501 Thioredoxin, nucleored 97.9 1.1E-05 2.3E-10 68.3 4.4 69 450-518 32-129 (157)
268 TIGR02200 GlrX_actino Glutared 97.9 1.2E-05 2.6E-10 61.3 4.2 68 455-538 2-76 (77)
269 TIGR02739 TraF type-F conjugat 97.9 0.00011 2.4E-09 68.8 11.4 85 110-199 150-248 (256)
270 TIGR02540 gpx7 putative glutat 97.9 5.6E-05 1.2E-09 66.3 8.9 43 450-493 21-63 (153)
271 PF13728 TraF: F plasmid trans 97.9 3.6E-05 7.9E-10 70.9 7.9 83 451-536 120-213 (215)
272 PF13192 Thioredoxin_3: Thiore 97.9 3.5E-05 7.6E-10 58.3 5.6 72 457-538 4-76 (76)
273 cd01659 TRX_superfamily Thiore 97.8 4.5E-05 9.9E-10 55.4 6.2 58 455-515 1-63 (69)
274 cd03074 PDI_b'_Calsequestrin_C 97.8 0.00012 2.6E-09 56.6 8.2 109 305-414 1-120 (120)
275 PRK11200 grxA glutaredoxin 1; 97.8 0.00015 3.3E-09 56.3 9.2 76 113-199 2-83 (85)
276 PTZ00253 tryparedoxin peroxida 97.8 0.00019 4.2E-09 65.9 11.0 88 109-198 35-163 (199)
277 PTZ00256 glutathione peroxidas 97.8 0.00012 2.6E-09 66.2 8.9 43 450-493 39-82 (183)
278 cd02981 PDI_b_family Protein D 97.8 0.00024 5.3E-09 56.8 9.7 88 100-197 7-96 (97)
279 KOG3425 Uncharacterized conser 97.8 0.00011 2.3E-09 58.3 7.1 73 101-176 13-104 (128)
280 cd02976 NrdH NrdH-redoxin (Nrd 97.7 0.00018 3.9E-09 53.9 8.1 67 114-194 2-72 (73)
281 PRK15317 alkyl hydroperoxide r 97.7 0.00089 1.9E-08 71.4 16.2 175 324-541 20-198 (517)
282 PF07912 ERp29_N: ERp29, N-ter 97.7 0.00073 1.6E-08 54.3 11.3 107 434-545 5-123 (126)
283 TIGR03143 AhpF_homolog putativ 97.7 0.0031 6.6E-08 67.9 19.5 177 110-299 366-554 (555)
284 PRK13703 conjugal pilus assemb 97.7 0.0003 6.4E-09 65.6 10.1 87 110-199 143-241 (248)
285 TIGR02739 TraF type-F conjugat 97.7 0.00016 3.4E-09 67.9 8.1 87 451-540 150-247 (256)
286 PF14595 Thioredoxin_9: Thiore 97.7 4.1E-05 9E-10 64.3 3.7 68 450-518 40-111 (129)
287 KOG3425 Uncharacterized conser 97.6 0.00025 5.4E-09 56.3 7.5 72 442-515 14-105 (128)
288 KOG2603 Oligosaccharyltransfer 97.6 0.00043 9.4E-09 64.8 10.4 113 91-203 38-170 (331)
289 KOG0911 Glutaredoxin-related p 97.6 4.6E-05 1E-09 68.0 3.8 79 106-188 13-92 (227)
290 PRK13703 conjugal pilus assemb 97.6 0.00025 5.4E-09 66.1 8.2 87 451-540 143-240 (248)
291 KOG2603 Oligosaccharyltransfer 97.6 0.00056 1.2E-08 64.1 10.3 118 433-551 40-177 (331)
292 PRK11200 grxA glutaredoxin 1; 97.6 0.00029 6.2E-09 54.7 7.3 75 454-542 2-84 (85)
293 cd03070 PDI_b_ERp44 PDIb famil 97.6 0.00024 5.1E-09 54.9 6.6 82 204-291 2-85 (91)
294 PRK10877 protein disulfide iso 97.6 0.00024 5.3E-09 66.5 8.0 83 109-198 106-230 (232)
295 PF00578 AhpC-TSA: AhpC/TSA fa 97.6 0.00022 4.7E-09 60.0 6.8 68 450-518 24-121 (124)
296 cd03072 PDI_b'_ERp44 PDIb' fam 97.5 0.00094 2E-08 54.6 10.1 100 96-200 2-109 (111)
297 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00012 2.6E-09 56.7 4.5 57 455-517 1-64 (84)
298 cd03017 PRX_BCP Peroxiredoxin 97.5 0.00021 4.5E-09 61.7 6.4 80 451-534 23-136 (140)
299 PF11009 DUF2847: Protein of u 97.5 0.002 4.3E-08 51.1 10.8 90 99-191 6-104 (105)
300 KOG1672 ATP binding protein [P 97.5 0.0003 6.4E-09 61.1 6.5 104 434-541 67-178 (211)
301 TIGR03140 AhpF alkyl hydropero 97.4 0.0045 9.7E-08 66.0 16.6 177 324-542 20-200 (515)
302 cd02991 UAS_ETEA UAS family, E 97.4 0.00097 2.1E-08 54.9 8.9 89 448-541 14-113 (116)
303 PF00462 Glutaredoxin: Glutare 97.4 0.0011 2.3E-08 47.5 8.0 54 114-178 1-58 (60)
304 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.00066 1.4E-08 62.3 8.7 79 109-195 76-197 (197)
305 cd03023 DsbA_Com1_like DsbA fa 97.4 0.0015 3.3E-08 57.2 10.5 31 109-139 4-34 (154)
306 COG2143 Thioredoxin-related pr 97.4 0.0013 2.8E-08 55.0 8.9 85 449-538 40-146 (182)
307 cd02983 P5_C P5 family, C-term 97.4 0.0054 1.2E-07 51.7 13.0 108 94-203 3-119 (130)
308 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0016 3.5E-08 53.2 9.4 98 97-198 3-110 (111)
309 KOG3414 Component of the U4/U6 97.3 0.0018 3.8E-08 51.9 8.7 75 100-177 11-87 (142)
310 cd03015 PRX_Typ2cys Peroxiredo 97.3 0.00082 1.8E-08 60.3 8.0 86 451-540 29-156 (173)
311 PF13462 Thioredoxin_4: Thiore 97.3 0.0039 8.4E-08 55.2 12.0 84 109-197 11-162 (162)
312 cd03067 PDI_b_PDIR_N PDIb fami 97.3 0.0023 5.1E-08 49.2 8.7 94 100-197 9-110 (112)
313 PRK00522 tpx lipid hydroperoxi 97.2 0.0012 2.6E-08 58.7 7.8 42 450-494 43-85 (167)
314 PRK15317 alkyl hydroperoxide r 97.2 0.0023 5E-08 68.3 10.9 97 97-200 102-199 (517)
315 TIGR02183 GRXA Glutaredoxin, G 97.2 0.001 2.2E-08 51.6 5.8 75 114-199 2-82 (86)
316 cd03419 GRX_GRXh_1_2_like Glut 97.1 0.0011 2.5E-08 50.9 6.0 56 114-178 2-62 (82)
317 PRK09437 bcp thioredoxin-depen 97.1 0.0013 2.9E-08 57.6 7.2 44 450-494 29-73 (154)
318 TIGR03137 AhpC peroxiredoxin. 97.1 0.0018 3.9E-08 58.8 7.9 89 450-539 30-154 (187)
319 PF07449 HyaE: Hydrogenase-1 e 97.1 0.0038 8.2E-08 49.8 8.3 92 92-187 8-103 (107)
320 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0018 3.9E-08 50.3 6.1 76 455-544 2-85 (86)
321 cd02968 SCO SCO (an acronym fo 97.0 0.0012 2.6E-08 57.0 5.8 45 450-494 21-68 (142)
322 TIGR02194 GlrX_NrdH Glutaredox 97.0 0.0036 7.9E-08 46.7 7.5 66 115-193 2-70 (72)
323 KOG3170 Conserved phosducin-li 97.0 0.0065 1.4E-07 53.1 9.2 130 408-543 68-203 (240)
324 PF03190 Thioredox_DsbH: Prote 96.9 0.002 4.3E-08 55.7 6.1 75 441-518 28-116 (163)
325 cd02976 NrdH NrdH-redoxin (Nrd 96.9 0.0019 4.1E-08 48.2 5.5 65 455-536 2-72 (73)
326 PRK11657 dsbG disulfide isomer 96.9 0.0083 1.8E-07 57.0 10.4 82 110-196 117-249 (251)
327 PRK10329 glutaredoxin-like pro 96.9 0.011 2.3E-07 45.2 9.1 71 114-198 3-76 (81)
328 PF02966 DIM1: Mitosis protein 96.9 0.012 2.5E-07 48.2 9.5 75 100-178 8-85 (133)
329 PHA03050 glutaredoxin; Provisi 96.9 0.0031 6.7E-08 51.1 6.3 66 103-178 6-78 (108)
330 cd02970 PRX_like2 Peroxiredoxi 96.8 0.0023 4.9E-08 55.7 5.9 46 451-497 23-69 (149)
331 cd03014 PRX_Atyp2cys Peroxired 96.8 0.0026 5.7E-08 55.0 6.0 42 450-494 25-67 (143)
332 KOG3414 Component of the U4/U6 96.8 0.004 8.7E-08 49.9 6.2 99 441-539 12-118 (142)
333 PRK10382 alkyl hydroperoxide r 96.8 0.0078 1.7E-07 54.3 9.0 90 450-541 30-156 (187)
334 PRK10954 periplasmic protein d 96.8 0.022 4.7E-07 52.7 12.2 32 110-141 37-71 (207)
335 PRK10606 btuE putative glutath 96.8 0.0023 5E-08 57.4 5.3 43 450-494 24-66 (183)
336 TIGR02190 GlrX-dom Glutaredoxi 96.8 0.0049 1.1E-07 47.0 6.4 57 111-178 7-66 (79)
337 cd03071 PDI_b'_NRX PDIb' famil 96.8 0.0065 1.4E-07 47.2 6.9 89 324-414 15-115 (116)
338 cd02066 GRX_family Glutaredoxi 96.7 0.0047 1E-07 45.8 6.2 54 114-178 2-59 (72)
339 cd03018 PRX_AhpE_like Peroxire 96.7 0.003 6.5E-08 55.0 5.4 43 452-495 29-72 (149)
340 TIGR03140 AhpF alkyl hydropero 96.6 0.013 2.9E-07 62.4 11.0 98 97-201 103-201 (515)
341 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0029 6.2E-08 48.6 4.4 55 455-517 2-63 (82)
342 PF05768 DUF836: Glutaredoxin- 96.5 0.0089 1.9E-07 45.7 6.5 78 113-196 1-81 (81)
343 TIGR02189 GlrX-like_plant Glut 96.5 0.0057 1.2E-07 48.8 5.6 60 105-177 3-69 (99)
344 TIGR02181 GRX_bact Glutaredoxi 96.5 0.0047 1E-07 47.1 4.9 54 114-178 1-58 (79)
345 PRK13190 putative peroxiredoxi 96.5 0.01 2.2E-07 54.6 7.8 90 451-541 27-154 (202)
346 cd03019 DsbA_DsbA DsbA family, 96.5 0.017 3.6E-07 52.0 9.2 33 109-141 14-46 (178)
347 PRK15000 peroxidase; Provision 96.5 0.012 2.6E-07 53.8 8.1 89 450-540 33-161 (200)
348 cd02971 PRX_family Peroxiredox 96.4 0.0053 1.1E-07 52.8 5.3 45 450-495 21-66 (140)
349 cd03067 PDI_b_PDIR_N PDIb fami 96.4 0.0087 1.9E-07 46.1 5.6 88 324-412 20-110 (112)
350 cd03418 GRX_GRXb_1_3_like Glut 96.4 0.012 2.7E-07 44.1 6.7 54 114-178 2-60 (75)
351 KOG3171 Conserved phosducin-li 96.4 0.011 2.5E-07 52.1 6.7 107 433-542 138-252 (273)
352 PF00462 Glutaredoxin: Glutare 96.3 0.0089 1.9E-07 42.7 5.0 49 455-511 1-55 (60)
353 cd03027 GRX_DEP Glutaredoxin ( 96.3 0.016 3.5E-07 43.3 6.6 50 114-172 3-56 (73)
354 PRK10877 protein disulfide iso 96.3 0.02 4.3E-07 53.8 8.6 82 450-541 106-231 (232)
355 COG1225 Bcp Peroxiredoxin [Pos 96.3 0.054 1.2E-06 46.7 10.2 88 109-198 29-155 (157)
356 TIGR00365 monothiol glutaredox 96.2 0.021 4.5E-07 45.4 7.1 65 102-178 4-76 (97)
357 KOG0911 Glutaredoxin-related p 96.1 0.0045 9.8E-08 55.5 3.2 73 449-527 15-89 (227)
358 cd02066 GRX_family Glutaredoxi 96.0 0.01 2.2E-07 43.9 4.4 54 455-518 2-61 (72)
359 cd03020 DsbA_DsbC_DsbG DsbA fa 96.0 0.018 3.9E-07 52.8 6.8 26 450-475 76-101 (197)
360 PRK10329 glutaredoxin-like pro 96.0 0.036 7.8E-07 42.3 7.3 70 455-541 3-77 (81)
361 cd03029 GRX_hybridPRX5 Glutare 96.0 0.026 5.7E-07 42.0 6.4 66 114-195 3-71 (72)
362 PHA03050 glutaredoxin; Provisi 96.0 0.0091 2E-07 48.4 4.1 60 454-518 14-80 (108)
363 cd03069 PDI_b_ERp57 PDIb famil 95.9 0.1 2.2E-06 42.1 10.1 89 99-198 7-103 (104)
364 cd03066 PDI_b_Calsequestrin_mi 95.9 0.16 3.5E-06 40.8 11.0 93 96-198 3-100 (102)
365 PRK13599 putative peroxiredoxi 95.9 0.035 7.5E-07 51.4 8.0 88 451-540 28-155 (215)
366 cd03028 GRX_PICOT_like Glutare 95.8 0.032 7E-07 43.6 6.3 48 120-178 21-72 (90)
367 TIGR02190 GlrX-dom Glutaredoxi 95.8 0.017 3.7E-07 44.0 4.6 57 451-517 6-67 (79)
368 KOG3170 Conserved phosducin-li 95.8 0.043 9.3E-07 48.1 7.4 85 93-184 91-179 (240)
369 PTZ00137 2-Cys peroxiredoxin; 95.7 0.041 8.9E-07 52.2 7.9 89 450-540 97-224 (261)
370 cd02972 DsbA_family DsbA famil 95.6 0.038 8.2E-07 43.6 6.4 59 114-175 1-91 (98)
371 PRK13191 putative peroxiredoxi 95.6 0.049 1.1E-06 50.4 7.8 88 451-540 33-160 (215)
372 PF00837 T4_deiodinase: Iodoth 95.6 0.1 2.3E-06 47.9 9.6 69 80-151 69-140 (237)
373 TIGR02194 GlrX_NrdH Glutaredox 95.6 0.025 5.3E-07 42.2 4.7 65 455-535 1-70 (72)
374 COG0695 GrxC Glutaredoxin and 95.5 0.045 9.9E-07 41.6 6.0 51 114-173 3-59 (80)
375 PRK13189 peroxiredoxin; Provis 95.4 0.056 1.2E-06 50.4 7.7 88 451-540 35-162 (222)
376 PF13743 Thioredoxin_5: Thiore 95.4 0.065 1.4E-06 48.0 7.8 26 116-141 2-27 (176)
377 cd03016 PRX_1cys Peroxiredoxin 95.4 0.058 1.3E-06 49.6 7.7 41 453-494 28-68 (203)
378 KOG2640 Thioredoxin [Function 95.4 0.015 3.2E-07 55.0 3.6 88 110-201 76-164 (319)
379 cd03418 GRX_GRXb_1_3_like Glut 95.3 0.036 7.8E-07 41.6 5.0 53 455-517 2-61 (75)
380 cd03027 GRX_DEP Glutaredoxin ( 95.3 0.039 8.4E-07 41.2 5.0 54 455-518 3-62 (73)
381 PRK10638 glutaredoxin 3; Provi 95.3 0.048 1E-06 41.9 5.6 54 114-178 4-61 (83)
382 TIGR02181 GRX_bact Glutaredoxi 95.2 0.028 6E-07 42.8 4.0 55 455-517 1-59 (79)
383 cd02972 DsbA_family DsbA famil 95.2 0.038 8.1E-07 43.7 5.0 40 455-494 1-40 (98)
384 PF05768 DUF836: Glutaredoxin- 95.2 0.023 4.9E-07 43.5 3.4 79 454-538 1-81 (81)
385 cd03029 GRX_hybridPRX5 Glutare 95.1 0.051 1.1E-06 40.4 5.1 64 455-537 3-71 (72)
386 TIGR02189 GlrX-like_plant Glut 95.0 0.05 1.1E-06 43.4 5.2 57 454-518 9-72 (99)
387 KOG1752 Glutaredoxin and relat 94.9 0.16 3.5E-06 40.6 7.6 63 102-173 6-73 (104)
388 PF07449 HyaE: Hydrogenase-1 e 94.9 0.034 7.3E-07 44.5 3.7 84 433-519 9-96 (107)
389 COG1999 Uncharacterized protei 94.9 0.87 1.9E-05 41.9 13.5 91 109-199 66-204 (207)
390 KOG2792 Putative cytochrome C 94.8 0.39 8.4E-06 44.3 10.6 91 109-199 138-275 (280)
391 cd03013 PRX5_like Peroxiredoxi 94.4 0.085 1.8E-06 46.1 5.7 56 108-165 28-88 (155)
392 PRK10824 glutaredoxin-4; Provi 94.4 0.13 2.9E-06 41.9 6.3 61 102-173 7-76 (115)
393 PF02966 DIM1: Mitosis protein 94.3 0.15 3.4E-06 41.8 6.4 95 441-538 9-114 (133)
394 COG0695 GrxC Glutaredoxin and 94.3 0.068 1.5E-06 40.6 4.2 53 455-517 3-63 (80)
395 PRK11657 dsbG disulfide isomer 94.3 0.22 4.8E-06 47.3 8.5 29 450-478 116-144 (251)
396 PF00837 T4_deiodinase: Iodoth 94.0 0.73 1.6E-05 42.5 10.7 61 431-492 80-143 (237)
397 COG3019 Predicted metal-bindin 93.8 1.3 2.8E-05 36.7 10.6 74 113-199 27-104 (149)
398 cd03023 DsbA_Com1_like DsbA fa 93.8 0.11 2.5E-06 45.1 5.2 31 451-481 5-35 (154)
399 TIGR00365 monothiol glutaredox 93.6 0.15 3.3E-06 40.4 5.0 57 451-517 11-77 (97)
400 cd03028 GRX_PICOT_like Glutare 93.5 0.13 2.7E-06 40.3 4.4 57 451-517 7-73 (90)
401 PRK10638 glutaredoxin 3; Provi 93.2 0.18 3.9E-06 38.7 4.8 53 455-517 4-62 (83)
402 KOG2640 Thioredoxin [Function 93.1 0.049 1.1E-06 51.5 1.7 85 451-542 76-163 (319)
403 PTZ00253 tryparedoxin peroxida 92.3 0.24 5.2E-06 45.4 5.2 89 451-541 36-164 (199)
404 PF11009 DUF2847: Protein of u 92.2 0.32 7E-06 38.7 5.0 78 440-519 7-92 (105)
405 PF13462 Thioredoxin_4: Thiore 92.1 0.42 9.2E-06 41.9 6.4 44 450-493 11-54 (162)
406 KOG3171 Conserved phosducin-li 92.0 0.5 1.1E-05 42.1 6.4 80 94-178 139-222 (273)
407 PRK12759 bifunctional gluaredo 91.9 0.4 8.7E-06 49.2 6.7 51 114-173 4-66 (410)
408 COG1331 Highly conserved prote 91.7 0.53 1.1E-05 50.0 7.4 84 93-179 26-121 (667)
409 PF01323 DSBA: DSBA-like thior 91.7 2.1 4.6E-05 38.8 10.8 38 113-152 1-38 (193)
410 KOG1752 Glutaredoxin and relat 91.4 0.56 1.2E-05 37.5 5.6 57 454-518 15-78 (104)
411 PRK10824 glutaredoxin-4; Provi 91.2 0.4 8.6E-06 39.2 4.7 60 451-518 14-81 (115)
412 cd03019 DsbA_DsbA DsbA family, 91.0 0.36 7.9E-06 43.2 4.9 33 450-482 14-46 (178)
413 cd03068 PDI_b_ERp72 PDIb famil 90.3 4.6 0.0001 32.6 10.2 89 99-197 7-106 (107)
414 PRK09810 entericidin A; Provis 89.6 0.32 6.9E-06 31.0 2.2 24 1-25 1-24 (41)
415 PRK12759 bifunctional gluaredo 88.7 0.59 1.3E-05 48.1 4.7 54 454-517 3-70 (410)
416 PF08139 LPAM_1: Prokaryotic m 88.3 0.38 8.1E-06 27.0 1.6 18 3-21 7-24 (25)
417 PF02630 SCO1-SenC: SCO1/SenC; 88.1 1.6 3.5E-05 38.9 6.7 55 109-163 51-109 (174)
418 COG5510 Predicted small secret 87.6 0.61 1.3E-05 29.8 2.5 24 1-24 1-26 (44)
419 cd02974 AhpF_NTD_N Alkyl hydro 85.7 11 0.00025 29.5 9.4 73 110-198 19-93 (94)
420 cd03074 PDI_b'_Calsequestrin_C 84.3 17 0.00037 28.9 9.4 88 451-540 20-119 (120)
421 cd02978 KaiB_like KaiB-like fa 84.1 6.3 0.00014 29.0 6.7 62 112-175 2-63 (72)
422 PRK15396 murein lipoprotein; P 83.9 0.9 2E-05 33.9 2.3 23 1-23 1-24 (78)
423 PRK09973 putative outer membra 83.9 0.89 1.9E-05 34.4 2.3 23 1-23 1-23 (85)
424 COG1651 DsbG Protein-disulfide 83.7 7.6 0.00016 36.8 9.3 37 158-198 206-242 (244)
425 PRK10081 entericidin B membran 83.6 1.1 2.5E-05 29.5 2.4 25 1-25 1-27 (48)
426 cd02974 AhpF_NTD_N Alkyl hydro 83.1 13 0.00028 29.2 8.7 74 451-539 18-92 (94)
427 PRK10954 periplasmic protein d 83.1 1.6 3.4E-05 40.3 4.2 32 451-482 37-71 (207)
428 TIGR02654 circ_KaiB circadian 83.0 5.9 0.00013 30.3 6.4 76 111-188 3-78 (87)
429 PRK09301 circadian clock prote 82.4 6 0.00013 31.3 6.4 77 110-188 5-81 (103)
430 cd03031 GRX_GRX_like Glutaredo 81.0 4.7 0.0001 34.6 6.0 51 114-173 2-66 (147)
431 COG0450 AhpC Peroxiredoxin [Po 78.7 21 0.00045 32.0 9.2 89 110-198 33-160 (194)
432 cd03060 GST_N_Omega_like GST_N 78.4 12 0.00026 27.3 6.9 56 115-178 2-58 (71)
433 cd03040 GST_N_mPGES2 GST_N fam 77.7 18 0.00039 26.8 7.8 74 114-200 2-77 (77)
434 PF06053 DUF929: Domain of unk 76.6 6.4 0.00014 36.9 5.9 57 449-512 56-112 (249)
435 PF04592 SelP_N: Selenoprotein 76.4 5.2 0.00011 36.8 5.0 47 109-155 25-72 (238)
436 PF13417 GST_N_3: Glutathione 75.9 29 0.00063 25.6 9.9 73 116-202 1-74 (75)
437 PRK13792 lysozyme inhibitor; P 74.5 1.9 4E-05 35.8 1.6 24 1-25 1-24 (127)
438 cd03035 ArsC_Yffb Arsenate Red 73.4 2.8 6.1E-05 33.7 2.4 21 455-475 1-21 (105)
439 cd03031 GRX_GRX_like Glutaredo 73.3 6.5 0.00014 33.8 4.7 53 455-517 2-70 (147)
440 cd02977 ArsC_family Arsenate R 73.2 2.8 6.1E-05 33.7 2.4 83 455-543 1-89 (105)
441 PF07172 GRP: Glycine rich pro 73.0 3.5 7.6E-05 32.3 2.7 12 1-12 1-12 (95)
442 cd03041 GST_N_2GST_N GST_N fam 72.4 27 0.0006 25.9 7.6 71 114-198 2-76 (77)
443 PF02402 Lysis_col: Lysis prot 71.8 1.9 4.1E-05 27.6 0.8 20 1-21 1-20 (46)
444 KOG2792 Putative cytochrome C 71.2 17 0.00036 34.0 7.0 87 451-541 139-275 (280)
445 TIGR00762 DegV EDD domain prot 71.1 20 0.00043 34.7 8.2 150 155-318 11-164 (275)
446 PRK11548 outer membrane biogen 68.9 3.7 8E-05 33.6 2.1 22 1-22 1-22 (113)
447 COG5567 Predicted small peripl 68.8 4.9 0.00011 27.3 2.2 24 1-24 1-24 (58)
448 PHA03075 glutaredoxin-like pro 68.7 5.1 0.00011 32.2 2.7 30 452-481 2-31 (123)
449 COG3634 AhpF Alkyl hydroperoxi 68.7 1.3E+02 0.0027 29.9 12.5 164 334-540 31-197 (520)
450 COG1331 Highly conserved prote 68.7 5.9 0.00013 42.5 4.1 80 436-518 29-122 (667)
451 TIGR02742 TrbC_Ftype type-F co 68.4 14 0.00031 30.9 5.5 55 489-543 55-117 (130)
452 PF13743 Thioredoxin_5: Thiore 68.1 6.2 0.00013 35.3 3.6 33 457-489 2-34 (176)
453 cd03051 GST_N_GTT2_like GST_N 67.4 22 0.00049 25.7 6.1 52 115-173 2-57 (74)
454 COG0386 BtuE Glutathione perox 67.2 73 0.0016 27.4 9.4 127 95-233 10-149 (162)
455 COG3417 FlgN Collagen-binding 66.5 4.4 9.6E-05 35.7 2.2 22 1-22 1-22 (200)
456 cd03036 ArsC_like Arsenate Red 66.4 4.9 0.00011 32.7 2.4 81 456-542 2-89 (111)
457 cd00570 GST_N_family Glutathio 66.1 17 0.00036 25.7 5.2 52 115-173 2-55 (71)
458 COG4545 Glutaredoxin-related p 66.1 6.7 0.00015 28.7 2.7 53 115-177 5-73 (85)
459 PF09673 TrbC_Ftype: Type-F co 65.6 20 0.00044 29.2 5.9 45 127-176 36-80 (113)
460 PRK01655 spxA transcriptional 65.5 6.1 0.00013 33.3 2.9 21 455-475 2-22 (131)
461 TIGR02742 TrbC_Ftype type-F co 65.1 13 0.00029 31.1 4.7 43 156-198 60-114 (130)
462 PRK11372 lysozyme inhibitor; P 65.1 4.7 0.0001 32.6 2.0 22 1-24 1-22 (109)
463 PF02630 SCO1-SenC: SCO1/SenC; 63.8 25 0.00055 31.2 6.7 59 437-496 39-101 (174)
464 cd02977 ArsC_family Arsenate R 63.6 6.5 0.00014 31.6 2.6 32 115-155 2-33 (105)
465 KOG0852 Alkyl hydroperoxide re 63.3 54 0.0012 28.8 8.0 89 109-197 32-159 (196)
466 cd03037 GST_N_GRX2 GST_N famil 62.7 25 0.00054 25.5 5.5 67 116-195 3-69 (71)
467 cd03013 PRX5_like Peroxiredoxi 62.6 14 0.00031 32.1 4.8 45 452-497 31-77 (155)
468 cd03035 ArsC_Yffb Arsenate Red 61.8 7.4 0.00016 31.3 2.6 33 115-156 2-34 (105)
469 cd00570 GST_N_family Glutathio 61.7 22 0.00049 25.0 5.2 50 456-511 2-55 (71)
470 PF09822 ABC_transp_aux: ABC-t 61.4 1.6E+02 0.0034 28.3 13.2 77 91-167 5-88 (271)
471 PRK13733 conjugal transfer pro 61.0 5.9 0.00013 34.4 2.0 22 1-23 1-22 (171)
472 TIGR01617 arsC_related transcr 60.0 16 0.00034 30.0 4.4 34 115-157 2-35 (117)
473 PF13627 LPAM_2: Prokaryotic l 59.7 8 0.00017 21.6 1.7 15 10-24 5-19 (24)
474 TIGR01617 arsC_related transcr 59.6 7.5 0.00016 32.0 2.4 78 456-542 2-89 (117)
475 PRK12559 transcriptional regul 59.5 9.2 0.0002 32.2 2.9 21 455-475 2-22 (131)
476 PRK01655 spxA transcriptional 59.5 18 0.00038 30.5 4.6 35 114-157 2-36 (131)
477 COG1999 Uncharacterized protei 58.7 30 0.00065 31.8 6.4 58 440-498 57-119 (207)
478 PRK11616 hypothetical protein; 58.6 8.1 0.00018 30.8 2.2 24 1-24 1-24 (109)
479 PF00255 GSHPx: Glutathione pe 58.6 24 0.00052 28.5 5.0 44 109-155 20-63 (108)
480 PF06053 DUF929: Domain of unk 58.2 27 0.00058 32.9 5.9 58 108-175 56-113 (249)
481 COG4594 FecB ABC-type Fe3+-cit 57.9 8.2 0.00018 35.9 2.4 24 2-25 4-27 (310)
482 PHA03075 glutaredoxin-like pro 57.7 19 0.00041 29.1 4.1 36 111-153 2-37 (123)
483 COG2761 FrnE Predicted dithiol 56.3 23 0.0005 32.7 5.1 43 158-203 175-217 (225)
484 cd03032 ArsC_Spx Arsenate Redu 55.7 12 0.00026 30.7 2.9 82 455-542 2-88 (115)
485 PF11839 DUF3359: Protein of u 55.1 9.7 0.00021 29.7 2.1 12 13-24 12-23 (96)
486 KOG2507 Ubiquitin regulatory p 54.3 1.4E+02 0.0029 30.3 10.1 89 109-199 17-111 (506)
487 KOG2507 Ubiquitin regulatory p 53.8 56 0.0012 32.9 7.5 87 449-539 16-109 (506)
488 cd03045 GST_N_Delta_Epsilon GS 53.4 49 0.0011 24.0 5.8 51 115-172 2-56 (74)
489 COG3065 Slp Starvation-inducib 53.3 8.7 0.00019 33.5 1.7 21 5-25 8-28 (191)
490 cd03036 ArsC_like Arsenate Red 53.2 13 0.00027 30.3 2.7 52 115-175 2-57 (111)
491 cd03059 GST_N_SspA GST_N famil 52.6 22 0.00047 25.9 3.7 69 115-197 2-71 (73)
492 PF07689 KaiB: KaiB domain; I 51.9 6.8 0.00015 29.8 0.8 55 117-173 3-57 (82)
493 PF09673 TrbC_Ftype: Type-F co 51.4 32 0.00069 28.1 4.7 45 468-514 36-80 (113)
494 cd03060 GST_N_Omega_like GST_N 50.5 15 0.00033 26.7 2.5 49 456-510 2-53 (71)
495 PF05984 Cytomega_UL20A: Cytom 50.3 41 0.00088 25.1 4.5 15 1-15 1-15 (100)
496 PRK13344 spxA transcriptional 49.9 16 0.00035 30.8 2.9 21 455-475 2-22 (132)
497 PRK10866 outer membrane biogen 49.7 12 0.00025 35.5 2.3 22 1-22 1-22 (243)
498 COG3017 LolB Outer membrane li 49.1 12 0.00025 33.7 1.9 23 2-24 4-26 (206)
499 PF12262 Lipase_bact_N: Bacter 47.1 15 0.00032 35.2 2.4 24 1-25 1-24 (268)
500 KOG1651 Glutathione peroxidase 46.9 2E+02 0.0043 25.2 8.8 122 96-229 20-154 (171)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-73 Score=557.31 Aligned_cols=447 Identities=48% Similarity=0.812 Sum_probs=414.3
Q ss_pred CCCCeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcE
Q 007882 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPT 170 (586)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 170 (586)
....|+.|+.+||+..+..+..++|.||||||+||++++|.+.+++..++..+..+.++.|||+.+..+|.+|+|++|||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 45679999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEeCCe-eeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhccccCcee
Q 007882 171 IYFFVDGQ-HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVN 249 (586)
Q Consensus 171 ~~~~~~g~-~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~~~~~~~~ 249 (586)
+.+|++|. ...|.|+++.+.|+.|+++..+|.+..+.+.+++..++...+.++||||..........+..++.+++++.
T Consensus 103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~ 182 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYK 182 (493)
T ss_pred EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccce
Confidence 99999997 59999999999999999999999999999999999999999999999999888877555666779999999
Q ss_pred EEecCChhHHHhcCCCCCCCCCeeEEeccCCcceecccCCCChhHHHHHHHhcCCCceeecCCCcccccccCCcccEEEE
Q 007882 250 FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLL 329 (586)
Q Consensus 250 F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~l~~ 329 (586)
|++++++++++.++++... .+.+++++..+.....|.|.++.+.|..||..+++|+|.++|..+...++....+..+++
T Consensus 183 F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~ 261 (493)
T KOG0190|consen 183 FAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDF 261 (493)
T ss_pred eeccCcHhHHhhccCCCCC-cceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeE
Confidence 9999999999999987533 455888999898889999999999999999999999999999999999988887887888
Q ss_pred EEec--cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCC-CCCHHHH
Q 007882 330 FAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDKI 406 (586)
Q Consensus 330 ~~~~--~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~-~~t~e~i 406 (586)
|... +..+.+++.++++|++|+++++|+++|... +. ..+..||+.....|+.+++......+|.+.. +.+.++|
T Consensus 262 ~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~--~~-~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~i 338 (493)
T KOG0190|consen 262 FVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPES--FA-RVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENI 338 (493)
T ss_pred EeccccccHHHHHHHHHHHHHhcccceEEEEEChHH--hh-HHHHhcCcccccCCeeEEeeccccccccCccccccHHHH
Confidence 7755 478899999999999999999999997544 33 4789999997777766677777888999876 4899999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCC-CCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCc
Q 007882 407 KTFGEDFLEGKLKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 485 (586)
Q Consensus 407 ~~fi~~~~~gkl~~~~ks~~~~~~~~-~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~ 485 (586)
+.|+.+++.|+++|+++|+++|+.++ ++|+.+++++|++.+.+.+++|+|.||||||+||+++.|+|++||+.+++..+
T Consensus 339 e~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~ 418 (493)
T KOG0190|consen 339 ESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDEN 418 (493)
T ss_pred HHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCC
Confidence 99999999999999999999999997 88999999999999999999999999999999999999999999999999889
Q ss_pred EEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhcCC
Q 007882 486 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 486 i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~ 542 (586)
++++++|.+.|+.+...++++|||++|+.|.+. +|+.|.|.|+.+.+..|+.+++.
T Consensus 419 vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~-~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 419 VVIAKMDATANDVPSLKVDGFPTILFFPAGHKS-NPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cEEEEeccccccCccccccccceEEEecCCCCC-CCcccCCCcchHHHHhhhccCCC
Confidence 999999999999999999999999999999987 79999999999999999999998
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=1.1e-58 Score=488.70 Aligned_cols=428 Identities=37% Similarity=0.647 Sum_probs=370.3
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
.+..++.++|+.++.+++.++|+|||+||++|+++.|.|.++++.+...+.++.++.|||+.+..+|++++|.++||+++
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKF 112 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEE
Confidence 58899999999999999999999999999999999999999999887766679999999999999999999999999999
Q ss_pred EeCCeeeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEe
Q 007882 174 FVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQ 252 (586)
Q Consensus 174 ~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~F~~ 252 (586)
|++|....|.|.++.+.|.+|+.+.+++++..+.+.+++..+.......+++++.+.+......|.+++ .++..+.|+.
T Consensus 113 ~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~ 192 (477)
T PTZ00102 113 FNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFV 192 (477)
T ss_pred EECCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEE
Confidence 999965699999999999999999999999999999998888777888888888887777888888877 5667788876
Q ss_pred cCChhHHHhcCCCCCCCCCeeEEeccCCcceecccCCCChhHHHHHHHhcCCCceeecCCCcccccccCCcccEEEEEEe
Q 007882 253 TTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAV 332 (586)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~l~~~~~ 332 (586)
..+. ..+.+.+|+..+.....|.| .+.++|..||+.+++|++.+++.+++..++..+... ++++..
T Consensus 193 ~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~ 258 (477)
T PTZ00102 193 KKHE------------GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFCGT 258 (477)
T ss_pred EcCC------------CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEecC
Confidence 5432 24678888876655555555 488999999999999999999999999988776533 333334
Q ss_pred ccchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCC----CCCHHHHHH
Q 007882 333 SNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG----ELTLDKIKT 408 (586)
Q Consensus 333 ~~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~----~~t~e~i~~ 408 (586)
.++.+.+.+.++++|++|++++.|+++|+.... ..++..+|+.. .|.+++.+... +|.+.+ .++.++|.+
T Consensus 259 ~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~--~~~~~~~gi~~--~P~~~i~~~~~--~y~~~~~~~~~~~~~~l~~ 332 (477)
T PTZ00102 259 TEDYDKYKSVVRKVARKLREKYAFVWLDTEQFG--SHAKEHLLIEE--FPGLAYQSPAG--RYLLPPAKESFDSVEALIE 332 (477)
T ss_pred HHHHHHHHHHHHHHHHhccCceEEEEEechhcc--hhHHHhcCccc--CceEEEEcCCc--ccCCCccccccCCHHHHHH
Confidence 456677889999999999999999999987632 23678899975 78887776432 454443 378999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEE
Q 007882 409 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVI 488 (586)
Q Consensus 409 fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~ 488 (586)
|++++++|+++++++|+++|+..++.++.+++++|++.+.+++++++|.|||+||++|+.+.|.|+++++.+++...+.+
T Consensus 333 Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~ 412 (477)
T PTZ00102 333 FFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIV 412 (477)
T ss_pred HHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEE
Confidence 99999999999999999999888889999999999999888899999999999999999999999999999887667999
Q ss_pred EEEeCCcccc--ccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhcCCC
Q 007882 489 AKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 543 (586)
Q Consensus 489 ~~id~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 543 (586)
+.+|++.++. ..++++++||+++|++|+++ +.+|.|.++.+.|.+||.+++..
T Consensus 413 ~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~--~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 413 AKMNGTANETPLEEFSWSAFPTILFVKAGERT--PIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEECCCCccchhcCCCcccCeEEEEECCCcc--eeEecCcCCHHHHHHHHHHcCCC
Confidence 9999988764 68999999999999998763 56899999999999999999976
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=2.9e-58 Score=485.05 Aligned_cols=446 Identities=42% Similarity=0.738 Sum_probs=389.0
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
+|+.++.++|+++++++++++|+|||+||++|+++.|.|.++++.+...+.++.|+.|||++++.+|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 57899999999999999999999999999999999999999999988765679999999999999999999999999999
Q ss_pred EeCCe--eeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-cccCcee-
Q 007882 174 FVDGQ--HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVN- 249 (586)
Q Consensus 174 ~~~g~--~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~- 249 (586)
|++|. ...|.|.++.+.|.+|+.+.+++++..+++.++++.++...+..+|+|+.+........|.+++ .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 99885 5899999999999999999999999999999999999999999999999887778888898887 4555555
Q ss_pred EEecCChhHHHhcCCCCCCCCCeeEEeccCCcce--ecccCCC--ChhHHHHHHHhcCCCceeecCCCcccccccCCccc
Q 007882 250 FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKI--SYFDGKF--DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN 325 (586)
Q Consensus 250 F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~--~~y~g~~--~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~ 325 (586)
|+.+.+..+...++... +.+++|+..+... ..|.|.. +.++|..||..+++|++++++.+++..++..+ +.
T Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~ 236 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL 236 (462)
T ss_pred EEecCCHHHHhhcCCCC----CcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence 45556777888887653 6777777654333 4677765 56899999999999999999999999988776 44
Q ss_pred EEEEEEec-c--chhhHHHHHHHHHHhccC-ceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCC-C
Q 007882 326 QLLLFAVS-N--DSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-E 400 (586)
Q Consensus 326 ~l~~~~~~-~--~~~~~~~~l~~lA~~~~~-~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~-~ 400 (586)
.++++... . .++.+.+.++++|++|++ .+.|+++|+.. ...+++.+|+.....|.+++++.....+|.+.+ .
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~ 313 (462)
T TIGR01130 237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEED---FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEE 313 (462)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHH---hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCC
Confidence 44433333 2 247889999999999997 89999999865 446888999987779999988776546788776 8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHh
Q 007882 401 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 480 (586)
Q Consensus 401 ~t~e~i~~fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 480 (586)
++.++|.+|++++++|+++|+++|+++|+..++.+..+++++|.+.+.+++++++|+||++||++|+.+.|.|+++++.+
T Consensus 314 ~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~ 393 (462)
T TIGR01130 314 FSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKY 393 (462)
T ss_pred CCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888899999999999999888999999999999999999999999999999
Q ss_pred cCC-CcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhcCCCCcccc
Q 007882 481 RGV-DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQ 548 (586)
Q Consensus 481 ~~~-~~i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~ 548 (586)
++. ..+.++.+|++.+++..+++.++||+++|++|.+. .+..|.|.++.+.|.+||.++++.+++..
T Consensus 394 ~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 461 (462)
T TIGR01130 394 KDAESDVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHATFPLEGK 461 (462)
T ss_pred hcCCCcEEEEEEECCCCccCCCCccccCEEEEEeCCCCc-CceEecCcCCHHHHHHHHHhcCCCCCcCC
Confidence 873 37999999999988766999999999999999875 56789999999999999999998887654
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=2.1e-34 Score=259.32 Aligned_cols=320 Identities=24% Similarity=0.388 Sum_probs=258.9
Q ss_pred eChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCC--CceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007882 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSAN--ESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 98 l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (586)
++..|++.++.....++|+|||+||+.++.++|.|.++++.++... .++.++.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 3567899999999999999999999999999999999999887652 47999999999999999999999999999999
Q ss_pred CCee--eeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEe
Q 007882 176 DGQH--KAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQ 252 (586)
Q Consensus 176 ~g~~--~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~F~~ 252 (586)
+|.. ..|+|.++.+.|.+||++.+..++.++.+..+++......+..+|+||.+.++++++.|..++ -+++++.|.+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 9943 489999999999999999999999999999999999888889999999999999999999887 6789999987
Q ss_pred cCChhHHHhcCCCCCCCCCeeEEeccCCc-ceecccCCC-ChhHHHHHHHhcCCCceeecCCCcccccccCCcccEEEEE
Q 007882 253 TTNPDVAKIFHLDSKVNRPALVMVKKETE-KISYFDGKF-DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF 330 (586)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~-~~~~y~g~~-~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~l~~~ 330 (586)
..+.... ..... ..+ ++++++... .-..|.|.+ +.+.+..||...+.|+|+++|.+|...+...+.|+++++.
T Consensus 161 ~~gD~~~-~~~~~---~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~ 235 (375)
T KOG0912|consen 161 GFGDLLK-PHEPP---GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFR 235 (375)
T ss_pred ecccccc-CCCCC---CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEe
Confidence 6643221 11111 112 566766542 223799988 4699999999999999999999999999998887765544
Q ss_pred EeccchhhHHHHHHHHHHhccC---ceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCC---CCCCHH
Q 007882 331 AVSNDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD---GELTLD 404 (586)
Q Consensus 331 ~~~~~~~~~~~~l~~lA~~~~~---~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~---~~~t~e 404 (586)
..++......--..+++++.+ -++|...|+.. .+.-+.++|-++.++|+++|.... .+|.+. +-..+.
T Consensus 236 -~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~---f~hpL~HlgKs~~DLPviaIDsF~--Hmylfp~f~di~~pG 309 (375)
T KOG0912|consen 236 -KKDDKESEKIFKNAIARELDDETLAINFLTADGKV---FKHPLRHLGKSPDDLPVIAIDSFR--HMYLFPDFNDINIPG 309 (375)
T ss_pred -cCCcccHHHHHHHHHHHHhhhhhhccceeecCcce---ecchHHHhCCCcccCcEEEeeccc--eeeecCchhhhcCcc
Confidence 444433333333345555543 38899999875 445678999999999999988765 456543 346678
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCC
Q 007882 405 KIKTFGEDFLEGKLKPFFKSDPIP 428 (586)
Q Consensus 405 ~i~~fi~~~~~gkl~~~~ks~~~~ 428 (586)
.|.+|+.+..+|++.+.+...+-|
T Consensus 310 kLkqFv~DL~sgklHrefH~~~d~ 333 (375)
T KOG0912|consen 310 KLKQFVADLHSGKLHREFHEGPDP 333 (375)
T ss_pred HHHHHHHHHhCchhhHHhhcCCCC
Confidence 999999999999999887766544
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.97 E-value=2.4e-29 Score=232.15 Aligned_cols=326 Identities=20% Similarity=0.325 Sum_probs=237.2
Q ss_pred CCCCC-CCeEEeChhhHHHHHhCCCeEEEEEECCCChhhhh-----hhH-HHHHHHHHhhcCCCceEEEEEeCCCcHHHH
Q 007882 88 PEIDD-KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQA-----LAP-EYAAAATELKSANESVVLAKVDATEENELA 160 (586)
Q Consensus 88 ~~~~~-~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~-----~~p-~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~ 160 (586)
|..+. ..|+.||.+||.+++++.+..+|+|+.+--..--. +.. .++-+|+-+.. .+|.|+.||..++..++
T Consensus 28 P~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--~gigfg~VD~~Kd~klA 105 (383)
T PF01216_consen 28 PEYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--KGIGFGMVDSKKDAKLA 105 (383)
T ss_dssp SS-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--CTEEEEEEETTTTHHHH
T ss_pred ccCCCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--cCcceEEeccHHHHHHH
Confidence 33444 45999999999999999999999999886332211 112 34444444444 46999999999999999
Q ss_pred HHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhccc-CCeEEEEEecCCCCcchHHHH
Q 007882 161 HEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTS-ETKVVLGYLNSLVGSESEVLA 239 (586)
Q Consensus 161 ~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~-~~~~~i~~~~~~~~~~~~~f~ 239 (586)
+++|+...+++++|++|..+.|.|.++++.|++||...+..++..|++..++..|..- ....+||||.+..+..++.|.
T Consensus 106 KKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~Fe 185 (383)
T PF01216_consen 106 KKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFE 185 (383)
T ss_dssp HHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHH
T ss_pred HhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988874 478999999999999999999
Q ss_pred Hhc-cccCceeEEecCChhHHHhcCCCCCCCCCeeEEeccCCcceecccC-CCChhHHHHHHHhcCCCceeecCCCcccc
Q 007882 240 DAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFDG-KFDKSTIADFVFSNKLPLVTIFTRENAPS 317 (586)
Q Consensus 240 ~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g-~~~~~~i~~fi~~~~~p~v~~lt~~~~~~ 317 (586)
.+| .++..+.|+.+.++.++++++++ ...+-+|++-.+.+++..| +.+..+|.+||..|..|.+++++.+++..
T Consensus 186 eAAe~F~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e 261 (383)
T PF01216_consen 186 EAAEHFQPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFE 261 (383)
T ss_dssp HHHHHCTTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHH
T ss_pred HHHHhhcCceeEEEEecchhhhhcCcc----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhh
Confidence 888 79999999999999999999996 4788999998777777776 45788999999999999999999999887
Q ss_pred cccCC-cccEEEEEEecc--chhhHHHHHHHHHHhccC--ceEEEEEECCCccccccc-ccccCccCCCCceEEEecCCC
Q 007882 318 VFESP-IKNQLLLFAVSN--DSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPV-SEYFGITGEAPKVLAYTGNDD 391 (586)
Q Consensus 318 ~~~~~-~~~~l~~~~~~~--~~~~~~~~l~~lA~~~~~--~~~f~~vd~~~~~~~~~~-~~~~gi~~~~~p~~~i~~~~~ 391 (586)
..... .-.+++.|.... +..+++..++++|+...+ .+.++|+|.+..+..-.. .+.|||+-. .|.+.+++...
T Consensus 262 ~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtd 340 (383)
T PF01216_consen 262 TWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTD 340 (383)
T ss_dssp HHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTT
T ss_pred hhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEeccc
Confidence 76543 346788888774 467899999999998875 499999999886633333 578999765 47777776654
Q ss_pred C--CcccCCC---CCCHHHHHHHHHHHhcCCCCC
Q 007882 392 A--KKHILDG---ELTLDKIKTFGEDFLEGKLKP 420 (586)
Q Consensus 392 ~--~~y~~~~---~~t~e~i~~fi~~~~~gkl~~ 420 (586)
. .-+.+.+ ..|.+.++.|++++++|++..
T Consensus 341 adsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 341 ADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp SEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred cccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 3 3334442 468999999999999999874
No 6
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=227.43 Aligned_cols=297 Identities=22% Similarity=0.347 Sum_probs=227.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCH
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (586)
....|+|.||||||+||+++.|.|.++...+++.+.+|.++++||+.-+.++.+++|++|||+.++++|..+.|+|+++.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K 121 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK 121 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhccccCceeEEecCChhHHHhcC-CCCC
Q 007882 189 DAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFH-LDSK 267 (586)
Q Consensus 189 ~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~~~~~~~~F~~~~~~~~~~~~~-~~~~ 267 (586)
+.|.+|..+..++.+..|.+-......+.....+..+||....++....|..++..+-.+..++..+++++-.++ .+
T Consensus 122 d~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~~~~a~FfSaseeVaPe~~~~k-- 199 (468)
T KOG4277|consen 122 DAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEKFSVARFFSASEEVAPEENDAK-- 199 (468)
T ss_pred HHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhheeeeeeeccccccCCcccchh--
Confidence 999999999999988888763333334444555667777877888999999988655555545554555544333 33
Q ss_pred CCCCeeEEeccCCcceecccCCCChhHHHHHHHhcCCCceeecCCCcccccccCCcccEEEEEEec------cchhhHHH
Q 007882 268 VNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS------NDSEKLLP 341 (586)
Q Consensus 268 ~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~ 341 (586)
..|++.+|+.+. +..+. +-+.+++.+||+..++|.+-.-+..++..+-.+++-..+.+.... ....++..
T Consensus 200 -empaV~VFKDet--f~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~~k 275 (468)
T KOG4277|consen 200 -EMPAVAVFKDET--FEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREFHK 275 (468)
T ss_pred -hccceEEEccce--eEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHHHH
Confidence 369999998754 22222 335689999999999999999999999888777644433333222 23456777
Q ss_pred HHHHHHHhccC------ceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCC---CCCHHHHHHHHHH
Q 007882 342 VFEEAAKSFKG------KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG---ELTLDKIKTFGED 412 (586)
Q Consensus 342 ~l~~lA~~~~~------~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~---~~t~e~i~~fi~~ 412 (586)
...++|+.|++ +..|+|.|+.+ +...+.+.....|.+++++.....+|.-.. ..+.++|.+|+++
T Consensus 276 i~eEaakd~Rd~pdfh~dFQF~hlDGnD------~~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFien 349 (468)
T KOG4277|consen 276 IAEEAAKDLRDHPDFHNDFQFAHLDGND------LANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIEN 349 (468)
T ss_pred HHHHHHHHHHhChhhhhhceeeccchhH------HHHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhc
Confidence 88888888775 47999999653 334444445557888888777666665332 4678899999988
Q ss_pred HhcCC
Q 007882 413 FLEGK 417 (586)
Q Consensus 413 ~~~gk 417 (586)
-..|-
T Consensus 350 tsegI 354 (468)
T KOG4277|consen 350 TSEGI 354 (468)
T ss_pred ccccc
Confidence 65553
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=6.5e-22 Score=161.57 Aligned_cols=101 Identities=17% Similarity=0.307 Sum_probs=93.1
Q ss_pred CCCeEEeChhhHHHH---HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHH-HHcCCCC
Q 007882 92 DKDVVVLKERNFSDV---IENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA-HEYDVQG 167 (586)
Q Consensus 92 ~~~v~~l~~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~-~~~~i~~ 167 (586)
..+|++|++.+|+++ +.+++++||.|||+||+||+.+.|.|+++++.+++ .+.|+.|||+++..+| ++|+|.+
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~d~~~~l~~~~~~I~~ 84 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINCWWPQGKCRKQKHFFY 84 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCCChHHHHHhcCCcc
Confidence 367999999999987 57889999999999999999999999999999976 6999999999999999 5899999
Q ss_pred CcEEEEEeCC-eeeeecCCCCHHHHHHHH
Q 007882 168 FPTIYFFVDG-QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 168 ~Pt~~~~~~g-~~~~~~g~~~~~~l~~~i 195 (586)
+||+++|++| ....|.|.++.+.|..|+
T Consensus 85 ~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 9999999998 668999999999999874
No 8
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.4e-20 Score=191.16 Aligned_cols=312 Identities=27% Similarity=0.477 Sum_probs=221.2
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-e
Q 007882 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-Q 178 (586)
Q Consensus 100 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~ 178 (586)
...+...+..+.+++|.||++||++|+.+.|.|.+++..+++ .+.++.|||+.+..+|++|+|+++||+.+|..| .
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~ 113 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKK 113 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCc
Confidence 334445566788999999999999999999999999999988 899999999999999999999999999999988 7
Q ss_pred eeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhccccCceeEEecCChhH
Q 007882 179 HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDV 258 (586)
Q Consensus 179 ~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~~~~~~~~F~~~~~~~~ 258 (586)
.+.|.|..+.+.+..|+...+.+.+......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 144 (383)
T KOG0191|consen 114 PIDYSGPRNAESLAEFLIKELEPSVKKLVEG------------------------------------------------- 144 (383)
T ss_pred eeeccCcccHHHHHHHHHHhhccccccccCC-------------------------------------------------
Confidence 8999999999999999999887766443221
Q ss_pred HHhcCCCCCCCCCeeEEeccCCcceecccCCCChhHHHHHHHhcCCCceeecCCCcccccccC-CcccEEEEEEec-cch
Q 007882 259 AKIFHLDSKVNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES-PIKNQLLLFAVS-NDS 336 (586)
Q Consensus 259 ~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~-~~~~~l~~~~~~-~~~ 336 (586)
-+..++..++...... ....++.+|... .+|
T Consensus 145 -----------------------------------------------~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~c 177 (383)
T KOG0191|consen 145 -----------------------------------------------EVFELTKDNFDETVKDSDADWLVEFYAPWCGHC 177 (383)
T ss_pred -----------------------------------------------ceEEccccchhhhhhccCcceEEEEeccccHHh
Confidence 0000011111111011 111223333333 568
Q ss_pred hhHHHHHHHHHHhcc--CceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCCCCCHHHHHHHHHHHh
Q 007882 337 EKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 414 (586)
Q Consensus 337 ~~~~~~l~~lA~~~~--~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~~ 414 (586)
+.....+.++|..+. ..+.++.+|++. ...++..+++.. .|.+.++..+....+.+.+..+.+.|..|+.+..
T Consensus 178 k~l~~~~~~~a~~~~~~~~v~~~~~d~~~---~~~~~~~~~v~~--~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 178 KKLAPEWEKLAKLLKSKENVELGKIDATV---HKSLASRLEVRG--YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred hhcChHHHHHHHHhccCcceEEEeeccch---HHHHhhhhcccC--CceEEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 888899999999886 468888888763 456788888876 6888888666542455567899999999999987
Q ss_pred cCCCCCC-CCCCCCCCCCCCCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHH-hcCCCcEEEEEEe
Q 007882 415 EGKLKPF-FKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMD 492 (586)
Q Consensus 415 ~gkl~~~-~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~i~~~~id 492 (586)
.-...+. ..+-.-+......+ ++.+.|... .......++.|+++||++|....|.+...+.. +.....+.+.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 329 (383)
T KOG0191|consen 253 RRNIPEPELKEIEDKDTFSPTF--LDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLD 329 (383)
T ss_pred CCCCCCcccccccCccccccch--hhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccc
Confidence 7642221 11111010000111 111222222 23456789999999999999999999999988 3333467788888
Q ss_pred CCccc--cccCCCCcCcEEEEEeCCCcc
Q 007882 493 GTTNE--HHRAKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 493 ~~~~~--~~~~~i~~~Pt~~~~~~g~~~ 518 (586)
+..-. +....++.+|++.++..+...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (383)
T KOG0191|consen 330 CALLKSLCQKAIVRGYPTIKLYNYGKNP 357 (383)
T ss_pred cccccchhhHhhhhcCceeEeecccccc
Confidence 76543 567788999999999877664
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=6.4e-21 Score=155.21 Aligned_cols=98 Identities=28% Similarity=0.695 Sum_probs=92.2
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
++++|+.++|++.+.++++++|+|||+||++|+.+.|.|.++++++++ .+.|+.|||++++.+|++++|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 578999999999998889999999999999999999999999999876 69999999999999999999999999999
Q ss_pred EeCC-eeeeecCCCCHHHHHHH
Q 007882 174 FVDG-QHKAYNGGRTKDAIVTW 194 (586)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~ 194 (586)
|++| ....|.|.++.+.|.+|
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhh
Confidence 9999 56789999999999887
No 10
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.84 E-value=3.2e-20 Score=152.37 Aligned_cols=104 Identities=17% Similarity=0.316 Sum_probs=92.9
Q ss_pred CCeEEeChhhHHHHHhCC-CeEEEEEECCCChh--hh--hhhHHHHHHHHHh--hcCCCceEEEEEeCCCcHHHHHHcCC
Q 007882 93 KDVVVLKERNFSDVIENN-KFVMVEFYAPWCGH--CQ--ALAPEYAAAATEL--KSANESVVLAKVDATEENELAHEYDV 165 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~-~~~lv~f~a~wC~~--C~--~~~p~~~~~~~~~--~~~~~~v~~~~vd~~~~~~l~~~~~i 165 (586)
..|..||++||++.+.++ .++|+.||++||+| |+ ...|.+.+++.++ .+ ++.|+.||++++++++++|+|
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeCCCCHHHHHHcCC
Confidence 468899999999888654 58899999999987 99 7888888888887 44 699999999999999999999
Q ss_pred CCCcEEEEEeCCeeeeecCCCCHHHHHHHHHHhc
Q 007882 166 QGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 166 ~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
+++||+++|++|+...|.|.++.+.|.+||.+++
T Consensus 86 ~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 9999999999997667999999999999998764
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.84 E-value=3.8e-20 Score=152.63 Aligned_cols=102 Identities=32% Similarity=0.715 Sum_probs=92.9
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCC---CceEEEEEeCCCcHHHHHHcCCCCCcE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSAN---ESVVLAKVDATEENELAHEYDVQGFPT 170 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~Pt 170 (586)
+|+++++++|++.+..+++++|.|||+||++|+++.|.|.++++.++... ..+.++.|||+.++.+|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 58899999999999989999999999999999999999999999875421 259999999999999999999999999
Q ss_pred EEEEeCCe--eeeecCCCCHHHHHHHH
Q 007882 171 IYFFVDGQ--HKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 171 ~~~~~~g~--~~~~~g~~~~~~l~~~i 195 (586)
+++|++|. ...|.|.++.+.|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999995 47899999999999885
No 12
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.9e-20 Score=154.56 Aligned_cols=105 Identities=30% Similarity=0.575 Sum_probs=95.7
Q ss_pred CCeEEeChhhHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEE
Q 007882 93 KDVVVLKERNFSDVI-ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 171 (586)
..+..++..+|++.+ +.+.||+|.|||+||+||+.+.|.+++++.++.+ .+.++.||.+++.+++.+|+|.++||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEccccccchHhhcceeeeeEE
Confidence 346677888999654 6789999999999999999999999999999977 899999999999999999999999999
Q ss_pred EEEeCC-eeeeecCCCCHHHHHHHHHHhcC
Q 007882 172 YFFVDG-QHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 172 ~~~~~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
++|++| +.-++.|..+.+.|.++|++.+.
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999 55689999999999999998764
No 13
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=1.9e-19 Score=147.63 Aligned_cols=101 Identities=44% Similarity=0.816 Sum_probs=95.1
Q ss_pred eEEeChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
|..+|+++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+.+ ++.|+.|||++++.+|++|+|.++||+++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEE
Confidence 578999999999987 89999999999999999999999999999986 79999999999999999999999999999
Q ss_pred EeCC-eeeeecCCCCHHHHHHHHHHh
Q 007882 174 FVDG-QHKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i~~~ 198 (586)
|++| ...+|.|..+.+.|.+||+++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999 556999999999999999874
No 14
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.82 E-value=1e-19 Score=148.28 Aligned_cols=100 Identities=39% Similarity=0.720 Sum_probs=90.5
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
+|++|+..+|++++. ++ ++|+|||+||++|+.+.|.|.++++.++. .++.++.|||++++.++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 588999999999885 44 78999999999999999999999987654 359999999999999999999999999999
Q ss_pred EeCCeeeeecCCCCHHHHHHHHHH
Q 007882 174 FVDGQHKAYNGGRTKDAIVTWIKK 197 (586)
Q Consensus 174 ~~~g~~~~~~g~~~~~~l~~~i~~ 197 (586)
|++|....|.|..+.+.|.+|+++
T Consensus 78 ~~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCEEEecCCCCHHHHHHHHhC
Confidence 999977889999999999999863
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.81 E-value=1.6e-19 Score=147.90 Aligned_cols=99 Identities=34% Similarity=0.709 Sum_probs=89.6
Q ss_pred CeEEeChhhHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007882 94 DVVVLKERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (586)
.+++++.++|++.+. .+++++|.|||+||++|+.+.|.|.++++++.+ .+.|+.|||++++.+|++++|+++||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 478899999998874 567999999999999999999999999999865 6999999999999999999999999999
Q ss_pred EEeCC--eeeeecCCCC-HHHHHHHH
Q 007882 173 FFVDG--QHKAYNGGRT-KDAIVTWI 195 (586)
Q Consensus 173 ~~~~g--~~~~~~g~~~-~~~l~~~i 195 (586)
+|++| ....|.|..+ .+.|.+||
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99876 5678999987 99998875
No 16
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.80 E-value=4.7e-19 Score=144.85 Aligned_cols=101 Identities=41% Similarity=0.819 Sum_probs=91.4
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
+++.+++++|+..+.++ +++|+|||+||++|+.+.|.|.++++++++....+.++.|||+++..+|++++|.++||+++
T Consensus 1 ~~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 1 GVLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred CeeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 36789999999999776 59999999999999999999999999987644469999999999999999999999999999
Q ss_pred EeCC-eeeeecCCCCHHHHHHHH
Q 007882 174 FVDG-QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i 195 (586)
|++| ...+|.|..+.+.|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 9988 557899999999998875
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.80 E-value=1.4e-18 Score=159.23 Aligned_cols=105 Identities=31% Similarity=0.702 Sum_probs=94.4
Q ss_pred CCeEEeChhhHHHHHhC-----CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCC
Q 007882 93 KDVVVLKERNFSDVIEN-----NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG 167 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~-----~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 167 (586)
..++++++.+|++.+.. +++++|+|||+||++|+.+.|.|+++++++++ .+.++.|||++++.++++|+|++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcccHHHHHHcCCCc
Confidence 46899999999998853 47899999999999999999999999999876 69999999999999999999999
Q ss_pred CcEEEEEeCCeeeee-cCCCCHHHHHHHHHHhcC
Q 007882 168 FPTIYFFVDGQHKAY-NGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 168 ~Pt~~~~~~g~~~~~-~g~~~~~~l~~~i~~~~~ 200 (586)
+||+++|++|....| .|.++.+.|.+|+.....
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999966655 577999999999988763
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.3e-19 Score=162.82 Aligned_cols=106 Identities=32% Similarity=0.652 Sum_probs=98.4
Q ss_pred CCeEEeChhhHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCc
Q 007882 93 KDVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (586)
..++++|+.||.+.+ ....||||+||+|||+||+++.|.+++++..+++ .+.+++|||+.++.++.+|||+++|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecCCcchhHHHHhCcCcCC
Confidence 349999999999876 2346999999999999999999999999999998 8999999999999999999999999
Q ss_pred EEEEEeCCee-eeecCCCCHHHHHHHHHHhcCC
Q 007882 170 TIYFFVDGQH-KAYNGGRTKDAIVTWIKKKIGP 201 (586)
Q Consensus 170 t~~~~~~g~~-~~~~g~~~~~~l~~~i~~~~~~ 201 (586)
|+++|.+|++ -.|.|....+.|.+|+.++++.
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999965 5899999999999999999977
No 19
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.80 E-value=1.3e-18 Score=159.07 Aligned_cols=179 Identities=31% Similarity=0.497 Sum_probs=152.8
Q ss_pred ecCCCCcchHHHHHhc-cccCceeEEecCChhHHHhcCCCCCCCCCeeEEeccCCcceecccCC-CChhHHHHHHHhcCC
Q 007882 227 LNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFDGK-FDKSTIADFVFSNKL 304 (586)
Q Consensus 227 ~~~~~~~~~~~f~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~ 304 (586)
|++.++...+.|..++ .+..++.|+.+.++++++.++++. |++++|+..+++...|.|. ++.++|.+||..+++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 4556677888999887 677789999999999999999974 9999999988888999998 899999999999999
Q ss_pred CceeecCCCcccccccCCcccEEEEEEec--cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCc
Q 007882 305 PLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 382 (586)
Q Consensus 305 p~v~~lt~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p 382 (586)
|++.++|.+++..++..+.+.+++++... ...+.+...++.+|+++++++.|+|+|+.. ...++..+|+++...|
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~---~~~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD---FPRLLKYFGIDEDDLP 153 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT---THHHHHHTTTTTSSSS
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH---hHHHHHHcCCCCccCC
Confidence 99999999999999988877666767643 456788899999999999999999999884 3467889999988899
Q ss_pred eEEEecCCCCCc-ccCCCCCCHHHHHHHHHH
Q 007882 383 VLAYTGNDDAKK-HILDGELTLDKIKTFGED 412 (586)
Q Consensus 383 ~~~i~~~~~~~~-y~~~~~~t~e~i~~fi~~ 412 (586)
.+++++...+.+ |.+.++++.++|.+|+++
T Consensus 154 ~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 154 ALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 999998665544 445789999999999975
No 20
>PHA02278 thioredoxin-like protein
Probab=99.78 E-value=2.1e-18 Score=138.59 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=81.1
Q ss_pred ChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc----HHHHHHcCCCCCcEEEEE
Q 007882 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFF 174 (586)
Q Consensus 99 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~ 174 (586)
+..+|++.+.++++++|.|||+||+||+.+.|.+.++++++.. .+.|+.||++.+ +.++++|+|.++||+++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 3578888888899999999999999999999999999987544 467899999875 689999999999999999
Q ss_pred eCC-eeeeecCCCCHHHHHHH
Q 007882 175 VDG-QHKAYNGGRTKDAIVTW 194 (586)
Q Consensus 175 ~~g-~~~~~~g~~~~~~l~~~ 194 (586)
++| ...+..|..+.+.|.++
T Consensus 80 k~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 KDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ECCEEEEEEeCCCCHHHHHhh
Confidence 999 45678898888888765
No 21
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.78 E-value=1.1e-18 Score=140.59 Aligned_cols=84 Identities=27% Similarity=0.595 Sum_probs=77.7
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC-CcHHHHHHcCCCCCcEEEEEeCCeeeeecCCC
Q 007882 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAHEYDVQGFPTIYFFVDGQHKAYNGGR 186 (586)
Q Consensus 108 ~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~ 186 (586)
.+|++++|+|||+||++|+.+.|.|+++++.+.+ +.++.||++ ..+.++++|+|.++||+++|++|...+|.|.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 3689999999999999999999999999998854 788999998 78999999999999999999988778999999
Q ss_pred CHHHHHHHH
Q 007882 187 TKDAIVTWI 195 (586)
Q Consensus 187 ~~~~l~~~i 195 (586)
+.+.|.+||
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999885
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.78 E-value=2.5e-18 Score=141.83 Aligned_cols=99 Identities=23% Similarity=0.427 Sum_probs=87.2
Q ss_pred EeChhhHHH-HHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 97 VLKERNFSD-VIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 97 ~l~~~~~~~-~~~--~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
.++.++|.+ ++. .+++++|+|||+||++|+.+.|.|.++++++.+ .++.++.|||+.++.++++++|+++||+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP--LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh--cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 457788875 443 679999999999999999999999999999976 258999999999999999999999999999
Q ss_pred EeCCee-eeecCCCCHHHHHHHHHH
Q 007882 174 FVDGQH-KAYNGGRTKDAIVTWIKK 197 (586)
Q Consensus 174 ~~~g~~-~~~~g~~~~~~l~~~i~~ 197 (586)
|++|+. ..+.|..+.+.|.+||.+
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhc
Confidence 999954 466898999999999875
No 23
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.78 E-value=1.6e-18 Score=139.61 Aligned_cols=89 Identities=22% Similarity=0.356 Sum_probs=77.2
Q ss_pred hhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007882 100 ERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 100 ~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (586)
.++|++.+. .+++++|.|||+||+||+.+.|.|.++++++++ .+.|+.||++++++++.+|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 467787775 478999999999999999999999999999876 689999999999999999999999999999999
Q ss_pred -eeeeecCCCCHHHH
Q 007882 178 -QHKAYNGGRTKDAI 191 (586)
Q Consensus 178 -~~~~~~g~~~~~~l 191 (586)
...+..|..+...|
T Consensus 79 ~~v~~~~G~~~~~~~ 93 (114)
T cd02954 79 KHMKIDLGTGNNNKI 93 (114)
T ss_pred EEEEEEcCCCCCceE
Confidence 44566676554443
No 24
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.78 E-value=2.5e-18 Score=142.37 Aligned_cols=98 Identities=48% Similarity=0.857 Sum_probs=89.2
Q ss_pred eEEeChhhHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC--cHHHHHHcCCCCCcEE
Q 007882 95 VVVLKERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTI 171 (586)
Q Consensus 95 v~~l~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 171 (586)
|+++++.+|++.+. .+++++|.|||+||++|+++.|.|.++++.+.+ .+.++.|||+. +..+|++|+|+++||+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 67899999999885 467799999999999999999999999999875 68999999998 8899999999999999
Q ss_pred EEEeCCe------eeeecCCCCHHHHHHHH
Q 007882 172 YFFVDGQ------HKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 172 ~~~~~g~------~~~~~g~~~~~~l~~~i 195 (586)
++|++|. ...|.|.++.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9998773 46899999999999997
No 25
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.77 E-value=2.6e-18 Score=140.40 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=89.1
Q ss_pred CCCeEEEeCcchhHHh--hccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-ccCCCCcC
Q 007882 432 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-HRAKSDGF 506 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v--~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~-~~~~i~~~ 506 (586)
.+.|..++.++|++.+ .+.++.++|.|||+||++|+.+.|.|+++++.+++ .+.|+++|++.+. + .+++|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 4578999999999973 47789999999999999999999999999999876 5889999998765 5 47999999
Q ss_pred cEEEEEeCCCcccCccccccccCHHHHHHHH
Q 007882 507 PTILFFPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 507 Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
||+++|++|+.. .+|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~~~---~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRGP---IEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCccc---eEEeCCCCHHHHHhhC
Confidence 999999998764 4899999999999874
No 26
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=8e-18 Score=144.50 Aligned_cols=104 Identities=27% Similarity=0.648 Sum_probs=95.2
Q ss_pred CCeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007882 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (586)
..++.++..+|+.+++++++++|+||++||++|+.+.|.|.++++++.+ ++.++.||+++++.++++|+|+++||++
T Consensus 35 ~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 35 GEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 3477899999999999899999999999999999999999999998776 6999999999999999999999999999
Q ss_pred EEeCC-eeeeecCCCCHHHHHHHHHHhc
Q 007882 173 FFVDG-QHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 173 ~~~~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
+|++| ....+.|..+.+.|.+|+.+.+
T Consensus 112 i~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 112 IFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999 4567889999999999998753
No 27
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.4e-19 Score=144.89 Aligned_cols=105 Identities=23% Similarity=0.404 Sum_probs=94.3
Q ss_pred CCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEE
Q 007882 433 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTIL 510 (586)
Q Consensus 433 ~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~ 510 (586)
..+..++..+|++.|.+++.||+|.|||+||++|+.+.|.+++++..+.+ .+.++++|.+.+. +.+|+|.++||++
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVL 120 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEE
Confidence 35677888999999999999999999999999999999999999999976 6888888877755 5899999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHHHhcCC
Q 007882 511 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 511 ~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~ 542 (586)
+|++|.+.. ++.|..+.+.|.++|++.+.
T Consensus 121 vfknGe~~d---~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 121 VFKNGEKVD---RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEECCEEee---eecccCCHHHHHHHHHHHhc
Confidence 999999986 78899999999999998754
No 28
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=9.1e-18 Score=138.78 Aligned_cols=104 Identities=23% Similarity=0.597 Sum_probs=94.0
Q ss_pred CCeEEeChhhHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEE
Q 007882 93 KDVVVLKERNFSDV-IENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (586)
Q Consensus 93 ~~v~~l~~~~~~~~-~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 171 (586)
..++.+++++|.+. ++.+++++|+||++||++|+.+.|.|+++++.+.+ ++.++.+|++..+.++++|+|+++||+
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 45888999999964 56688999999999999999999999999999876 699999999999999999999999999
Q ss_pred EEEeCCe-eeeecCCCCHHHHHHHHHHhc
Q 007882 172 YFFVDGQ-HKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 172 ~~~~~g~-~~~~~g~~~~~~l~~~i~~~~ 199 (586)
++|++|+ ..++.|..+.+.|..+|...+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999994 568889999999999998765
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.77 E-value=5.9e-18 Score=138.92 Aligned_cols=101 Identities=46% Similarity=0.899 Sum_probs=91.7
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC--cHHHHHHcCCCCCcEE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTI 171 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 171 (586)
+++.+++.+|+..++++++++|+||++||++|+++.|.+.++++.+... ..+.++.+||+. +..++++++|+++||+
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 3678999999999999999999999999999999999999999988742 268999999998 8999999999999999
Q ss_pred EEEeCC-eeeeecCCCCHHHHHHHH
Q 007882 172 YFFVDG-QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 172 ~~~~~g-~~~~~~g~~~~~~l~~~i 195 (586)
++|++| ....|.|..+.+.+.+||
T Consensus 80 ~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999 467899999999998875
No 30
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=7.1e-18 Score=138.13 Aligned_cols=99 Identities=49% Similarity=0.859 Sum_probs=90.6
Q ss_pred CeEEeChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007882 94 DVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (586)
+|.++++.+|++.+.+ +++++|.||++||++|+.+.|.|.++++.+.+ .+.++.+||+++..++++++|+++|+++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcchHHHHHHCCCCccCEEE
Confidence 3678999999998754 56699999999999999999999999999876 6999999999999999999999999999
Q ss_pred EEeCC--eeeeecCCCCHHHHHHHH
Q 007882 173 FFVDG--QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 173 ~~~~g--~~~~~~g~~~~~~l~~~i 195 (586)
+|++| ....|.|+++.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99988 567899999999999997
No 31
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.76 E-value=9e-18 Score=136.42 Aligned_cols=96 Identities=20% Similarity=0.460 Sum_probs=84.0
Q ss_pred eChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007882 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 98 l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (586)
-+.++|+.+++++++++|+|||+||++|+.+.|.|.++++.+++ ..+.|+.+|++ +.+++++|+|+++||+++|++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 46789999999999999999999999999999999999998864 24889999998 7789999999999999999999
Q ss_pred eee-eecCCCCHHHHHHHHHH
Q 007882 178 QHK-AYNGGRTKDAIVTWIKK 197 (586)
Q Consensus 178 ~~~-~~~g~~~~~~l~~~i~~ 197 (586)
... +..| .+.+.+.++|.+
T Consensus 82 ~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEEec-CChHHHHHHHhh
Confidence 654 5555 588888888864
No 32
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=6.8e-18 Score=138.00 Aligned_cols=97 Identities=40% Similarity=0.783 Sum_probs=86.5
Q ss_pred hhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeee
Q 007882 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHK 180 (586)
Q Consensus 101 ~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 180 (586)
++|+++ .++++++|.|||+||++|+.+.|.|.++++.+++.+..+.++.+||+..+.++++++|.++||+++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 566765 3467999999999999999999999999999876445699999999999999999999999999999888777
Q ss_pred eecCCCCHHHHHHHHHHh
Q 007882 181 AYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 181 ~~~g~~~~~~l~~~i~~~ 198 (586)
.|.|..+.+.|.+|+++.
T Consensus 86 ~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 86 NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eecCCCCHHHHHHHHHhh
Confidence 899999999999999864
No 33
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=4e-18 Score=137.83 Aligned_cols=98 Identities=30% Similarity=0.503 Sum_probs=85.3
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhhcCCCceEEEEEeC-----CCcHHHHHHc
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYA--PWCG---HCQALAPEYAAAATELKSANESVVLAKVDA-----TEENELAHEY 163 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a--~wC~---~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~-----~~~~~l~~~~ 163 (586)
.+++|+..||++++.+++.+||.||| |||+ +|+.+.|.+.+.+. .|.++.||| .++.+||++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHHh
Confidence 57899999999999999999999999 8888 67766666655442 489999999 4578899999
Q ss_pred CCC--CCcEEEEEeCC---eeeeecCC-CCHHHHHHHHHHh
Q 007882 164 DVQ--GFPTIYFFVDG---QHKAYNGG-RTKDAIVTWIKKK 198 (586)
Q Consensus 164 ~i~--~~Pt~~~~~~g---~~~~~~g~-~~~~~l~~~i~~~ 198 (586)
+|+ +|||+++|++| .+..|.|+ ++.+.|.+||++.
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 99999999988 35789997 9999999999875
No 34
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.76 E-value=9.5e-18 Score=136.44 Aligned_cols=94 Identities=18% Similarity=0.348 Sum_probs=79.6
Q ss_pred ChhhHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH---HHHHHcCCCCCcEEEE
Q 007882 99 KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN---ELAHEYDVQGFPTIYF 173 (586)
Q Consensus 99 ~~~~~~~~~~~--~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~ 173 (586)
+.++|++.+.. +++++|+|||+||++|+.++|.|.++++++ . ++.|+.||++++. .++++|+|.++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 35678888854 799999999999999999999999999988 3 5899999998874 7999999999999999
Q ss_pred EeCC-eeeeecCCCCHHHHHHHHHH
Q 007882 174 FVDG-QHKAYNGGRTKDAIVTWIKK 197 (586)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i~~ 197 (586)
|++| ...++.| ...+.|.+.+.+
T Consensus 78 ~~~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred EeCCeEEEEEeC-CCHHHHHHHHHh
Confidence 9999 4567777 556677666554
No 35
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.76 E-value=9e-18 Score=135.39 Aligned_cols=91 Identities=29% Similarity=0.583 Sum_probs=82.0
Q ss_pred hHHHHHh-C-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-e
Q 007882 102 NFSDVIE-N-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-Q 178 (586)
Q Consensus 102 ~~~~~~~-~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~ 178 (586)
+|++.+. . +++++|+||++||++|+.+.|.|.+++..+.+ .+.++.||++.++.++++|+|.++||+++|++| .
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 5666663 3 67999999999999999999999999999876 699999999999999999999999999999999 4
Q ss_pred eeeecCCCCHHHHHHHH
Q 007882 179 HKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 179 ~~~~~g~~~~~~l~~~i 195 (586)
...+.|..+.+.|..||
T Consensus 79 ~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 79 VDGFQGAQPEEQLRQML 95 (96)
T ss_pred eeeecCCCCHHHHHHHh
Confidence 46899999999999887
No 36
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.76 E-value=7.1e-18 Score=138.94 Aligned_cols=100 Identities=33% Similarity=0.639 Sum_probs=87.9
Q ss_pred CeEEeChhhHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-cHHHHHH-cCCCCC
Q 007882 94 DVVVLKERNFSDVIE---NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-ENELAHE-YDVQGF 168 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~---~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~-~~i~~~ 168 (586)
.|++++.++|+.++. ++++++|.||++||++|+++.|.|.++++.+++ .++.++.|||+. ...+|.+ ++|+++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence 478999999998873 578999999999999999999999999999875 359999999997 5778874 999999
Q ss_pred cEEEEEeCC--eeeeecCC-CCHHHHHHHH
Q 007882 169 PTIYFFVDG--QHKAYNGG-RTKDAIVTWI 195 (586)
Q Consensus 169 Pt~~~~~~g--~~~~~~g~-~~~~~l~~~i 195 (586)
||+++|++| ....|.|. ++.+.|.+||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999866 56889995 8999998885
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=1.1e-17 Score=136.76 Aligned_cols=100 Identities=55% Similarity=0.986 Sum_probs=91.6
Q ss_pred eChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007882 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 98 l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (586)
|++.+|++.+.++++++|+||++||++|+.+.|.|.++++.+++.+ ++.++.+||+++..++++|+|+++|++++|++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 5678999999889999999999999999999999999999887632 699999999999999999999999999999977
Q ss_pred -eeeeecCCCCHHHHHHHHHHh
Q 007882 178 -QHKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 178 -~~~~~~g~~~~~~l~~~i~~~ 198 (586)
....|.|..+.+.|..||.++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 478999999999999999875
No 38
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.74 E-value=1.1e-17 Score=136.99 Aligned_cols=101 Identities=32% Similarity=0.645 Sum_probs=93.2
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEE
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFF 512 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~ 512 (586)
|..++.++|++.+.+++++++|+||++||++|+.+.|.|.++++.+.+ ++.|+.+|++.+. +.+++|.++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 568999999999977689999999999999999999999999999886 7999999998875 589999999999999
Q ss_pred eCCCcccCccccccccCHHHHHHHHHhc
Q 007882 513 PAGNKSFDPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 513 ~~g~~~~~~~~~~g~~~~~~l~~~i~~~ 540 (586)
++|+... ++.|.++.+.|.+||++|
T Consensus 79 ~~g~~~~---~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK---RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE---EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE---EEECCCCHHHHHHHHHcC
Confidence 9999874 899999999999999986
No 39
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.73 E-value=1.7e-17 Score=134.94 Aligned_cols=98 Identities=24% Similarity=0.537 Sum_probs=86.4
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 511 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~ 511 (586)
.+..++.++|++.+ ..+++++|+||++||++|+.+.|.|+++++.+++ .+.|+.+|++.+. +.+++|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 46788999999987 5568999999999999999999999999999876 4889999988754 57899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHH
Q 007882 512 FPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 512 ~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
|++|+... +|.|.++.+.|.+|.
T Consensus 79 ~~~g~~~~---~~~G~~~~~~l~~f~ 101 (101)
T cd03003 79 FPSGMNPE---KYYGDRSKESLVKFA 101 (101)
T ss_pred EcCCCCcc---cCCCCCCHHHHHhhC
Confidence 99997654 899999999998873
No 40
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.73 E-value=1.6e-17 Score=136.00 Aligned_cols=99 Identities=29% Similarity=0.608 Sum_probs=86.9
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 511 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~ 511 (586)
.+..++.++|++.+.+++++++|.|||+||++|+.+.|.|+++++.+.+ .+.++.+|++.+. +.+++|+++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 4677899999999888888999999999999999999999999999865 5889999998865 47899999999999
Q ss_pred EeCC-CcccCccccccccC-HHHHHHHH
Q 007882 512 FPAG-NKSFDPINVDVDRT-VVALYKFL 537 (586)
Q Consensus 512 ~~~g-~~~~~~~~~~g~~~-~~~l~~~i 537 (586)
|++| +.. .+|.|..+ .++|.+||
T Consensus 80 ~~~g~~~~---~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKY---HSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCc---eEccCCCCCHHHHHhhC
Confidence 9988 443 48999887 99999885
No 41
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=3.2e-17 Score=134.53 Aligned_cols=103 Identities=61% Similarity=1.093 Sum_probs=91.6
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-ccCCCCcCcEEEEE
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF 512 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-~~~~i~~~Pt~~~~ 512 (586)
+|..+++++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+++...+.++.+|++.++. ..+++.++||+++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 37889999999998777899999999999999999999999999998875679999999988764 56788999999999
Q ss_pred eCCCcccCccccccccCHHHHHHHH
Q 007882 513 PAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 513 ~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
++|++. .+.+|.|..+.+.|.+||
T Consensus 81 ~~~~~~-~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKS-NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcC-CceEccCCcCHHHHHhhC
Confidence 998843 466899999999999986
No 42
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.4e-16 Score=160.19 Aligned_cols=204 Identities=30% Similarity=0.488 Sum_probs=171.3
Q ss_pred ccEEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCCCCC
Q 007882 324 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 402 (586)
Q Consensus 324 ~~~l~~~~~~-~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t 402 (586)
..++.+|... ..|..+...+++++..+++++.++-+|++. +..+|..+++.. .|++.++..+ .....+.+..+
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~g--fPtl~~f~~~-~~~~~~~~~~~ 122 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQG--FPTLKVFRPG-KKPIDYSGPRN 122 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCcc--CcEEEEEcCC-CceeeccCccc
Confidence 3444444443 889999999999999999999999999987 668999999976 7999888777 56677778899
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 007882 403 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482 (586)
Q Consensus 403 ~e~i~~fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 482 (586)
.+.+..|+...+...+...... .+..++..+|...+.+.+.+++|.||+|||++|+.+.|.|++++..+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~ 193 (383)
T KOG0191|consen 123 AESLAEFLIKELEPSVKKLVEG---------EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS 193 (383)
T ss_pred HHHHHHHHHHhhccccccccCC---------ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc
Confidence 9999999988877655432211 4888999999999988899999999999999999999999999999876
Q ss_pred CCcEEEEEEeCCc--cccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhcCCCC
Q 007882 483 VDSIVIAKMDGTT--NEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 544 (586)
Q Consensus 483 ~~~i~~~~id~~~--~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 544 (586)
...+.++.+|++. ..+..+.++.+||+.+|+.|.. -...+.|.|+.+.|+.|+.+.....
T Consensus 194 ~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 194 KENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred CcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccccccccHHHHHHHHHhhcCCC
Confidence 5679999999864 3457899999999999999888 1237788999999999999988775
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.72 E-value=5e-17 Score=129.94 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCeEEeChhhHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcE
Q 007882 93 KDVVVLKERNFSDVIENNKFVMVEFYAPW--CGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPT 170 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~w--C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 170 (586)
.++-.++..||+..+..+.+++|.||++| |++|+.+.|.|.++++++.+ .+.|+.||+++++.++.+|+|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 45667889999999988899999999997 99999999999999999977 68999999999999999999999999
Q ss_pred EEEEeCCe-eeeecCCCCHHHHH
Q 007882 171 IYFFVDGQ-HKAYNGGRTKDAIV 192 (586)
Q Consensus 171 ~~~~~~g~-~~~~~g~~~~~~l~ 192 (586)
+++|++|+ .....|..+.+.+.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 99999994 45788988877764
No 44
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.72 E-value=1.2e-16 Score=137.30 Aligned_cols=90 Identities=20% Similarity=0.442 Sum_probs=79.0
Q ss_pred CCeEEeChhhHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCC---
Q 007882 93 KDVVVLKERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG--- 167 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~--~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--- 167 (586)
..+..++.++|++.+.. +++++|+|||+||++|+.+.|.|.++++++++ .++.|+.||++++++++++++|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 35788999999998743 47899999999999999999999999998864 359999999999999999999988
Q ss_pred ---CcEEEEEeCCe-eeeecC
Q 007882 168 ---FPTIYFFVDGQ-HKAYNG 184 (586)
Q Consensus 168 ---~Pt~~~~~~g~-~~~~~g 184 (586)
+||+++|++|+ ..++.|
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEECCEEEEEEec
Confidence 99999999994 456665
No 45
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=6.3e-17 Score=132.79 Aligned_cols=99 Identities=48% Similarity=0.930 Sum_probs=87.9
Q ss_pred eEEeChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
|.+|++.+|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++ ...+.++.+||+.+ +++..+++.++||+++
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 678999999998754 58999999999999999999999999998866 23699999999987 6888999999999999
Q ss_pred EeCCe---eeeecCCCCHHHHHHHH
Q 007882 174 FVDGQ---HKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 174 ~~~g~---~~~~~g~~~~~~l~~~i 195 (586)
|++|. ...|.|..+.+.|.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 98774 57899999999999885
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.71 E-value=5.9e-17 Score=133.23 Aligned_cols=100 Identities=49% Similarity=0.955 Sum_probs=89.3
Q ss_pred eEEeChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-cHHHHHHcCCCCCcEEE
Q 007882 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-ENELAHEYDVQGFPTIY 172 (586)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~ 172 (586)
+.++++.+|++.+.. +++++|.||++||++|+.+.|.|..+++.++. ..++.++.+||+. ++.+|++++|+++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 678899999998864 45899999999999999999999999999873 2369999999999 89999999999999999
Q ss_pred EEeCC--eeeeecCCCCHHHHHHHH
Q 007882 173 FFVDG--QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 173 ~~~~g--~~~~~~g~~~~~~l~~~i 195 (586)
+|.+| ....|.|.++.+.|.+||
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 81 FFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEeCCCCCccccCCccCHHHHHhhC
Confidence 99866 567899999999999885
No 47
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.71 E-value=5.6e-17 Score=133.67 Aligned_cols=101 Identities=25% Similarity=0.496 Sum_probs=87.4
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC----CcEEEEEEeCCccc--cccCCCCcCc
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNE--HHRAKSDGFP 507 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~----~~i~~~~id~~~~~--~~~~~i~~~P 507 (586)
.+..+++++|++.+ +.+++++|.|||+||++|+.+.|.|+++++.+++. ..+.++.+|++.+. +.+++|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 57788999999976 66789999999999999999999999999887532 25899999998765 4789999999
Q ss_pred EEEEEeCCCcccCccccccccCHHHHHHHH
Q 007882 508 TILFFPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 508 t~~~~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
|+++|++|+.. ...|.|.++.+.|.+||
T Consensus 81 tl~~~~~g~~~--~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM--KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc--ceecCCCCCHHHHHhhC
Confidence 99999999853 34899999999999986
No 48
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.71 E-value=5.6e-17 Score=133.23 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=91.8
Q ss_pred CCCeEEEeCcchhHHhhccCCcEEEEEeCCCChh--hh--hhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCc
Q 007882 432 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDG 505 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~--C~--~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~ 505 (586)
...+..++.++|++.+.+++.++|++||++||++ |+ .+.|.+.+++..+-...++.++++|++.+. +.+|+|++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 3468889999999999888899999999999987 99 889999999998732236899999998765 58999999
Q ss_pred CcEEEEEeCCCcccCccccccccCHHHHHHHHHhc
Q 007882 506 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 506 ~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~ 540 (586)
+||+++|++|+.+ .|.|.++.+.|.+||++.
T Consensus 88 iPTl~lfk~G~~v----~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 88 EDSIYVFKDDEVI----EYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ccEEEEEECCEEE----EeeCCCCHHHHHHHHHHH
Confidence 9999999999865 589999999999999864
No 49
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.69 E-value=1.3e-16 Score=130.09 Aligned_cols=98 Identities=51% Similarity=0.969 Sum_probs=88.8
Q ss_pred EeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007882 97 VLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (586)
Q Consensus 97 ~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (586)
+++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.++. +..+.++.|||+++..++++|+|.++||+++|++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 578899999999888999999999999999999999999999841 2379999999999999999999999999999987
Q ss_pred C--eeeeecCCCCHHHHHHHH
Q 007882 177 G--QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 177 g--~~~~~~g~~~~~~l~~~i 195 (586)
| ...+|.|..+.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 6 668999999999998874
No 50
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.69 E-value=3.6e-16 Score=129.31 Aligned_cols=99 Identities=31% Similarity=0.630 Sum_probs=82.0
Q ss_pred CeEEeChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC--cHHHHHHcCCCCCcE
Q 007882 94 DVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPT 170 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt 170 (586)
.+++++.++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++....+.|+.|||+. +..+|++++|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5789999999998865 4699999999999999999999999999987644469999999964 568999999999999
Q ss_pred EEEEeCCee-----eeecCC-CCHHHHH
Q 007882 171 IYFFVDGQH-----KAYNGG-RTKDAIV 192 (586)
Q Consensus 171 ~~~~~~g~~-----~~~~g~-~~~~~l~ 192 (586)
+++|++|.. ..|.|+ +..+.+.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHH
Confidence 999987732 356665 4545543
No 51
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.68 E-value=3.9e-16 Score=129.44 Aligned_cols=87 Identities=21% Similarity=0.408 Sum_probs=77.8
Q ss_pred CCeEEeChhhHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCc
Q 007882 93 KDVVVLKERNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~---~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (586)
+.+..++.++|.+.+.+. ++++|.||++||++|+.+.|.|+++++++.+ +.|+.||++++ .++++++|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~-~l~~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA-FLVNYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh-HHHHhcCCCcCC
Confidence 457889999999888654 8999999999999999999999999998854 89999999988 999999999999
Q ss_pred EEEEEeCCe-eeeecC
Q 007882 170 TIYFFVDGQ-HKAYNG 184 (586)
Q Consensus 170 t~~~~~~g~-~~~~~g 184 (586)
|+++|++|+ ..++.|
T Consensus 79 t~~~f~~G~~v~~~~G 94 (113)
T cd02957 79 TLLVYKNGELIDNIVG 94 (113)
T ss_pred EEEEEECCEEEEEEec
Confidence 999999994 456666
No 52
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.68 E-value=5.5e-16 Score=126.45 Aligned_cols=99 Identities=32% Similarity=0.687 Sum_probs=87.7
Q ss_pred eChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007882 98 LKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (586)
Q Consensus 98 l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (586)
++.++|.+.+.. +++++|.||++||++|+.+.|.|.++++.+.+ ++.|+.||++.+..++++|+|.++|++++|++
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC
Confidence 356788887765 56999999999999999999999999988865 69999999999999999999999999999998
Q ss_pred C-eeeeecCCCCHHHHHHHHHHhc
Q 007882 177 G-QHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 177 g-~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
| ....+.|..+.+.+.+||++.+
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHhhC
Confidence 8 4567889999999999998753
No 53
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.6e-16 Score=125.37 Aligned_cols=84 Identities=37% Similarity=0.739 Sum_probs=73.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eeeeecCCCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNGGRT 187 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~g~~~ 187 (586)
.+++++|.|||+||+||+.+.|.+.+++.+|.+ +.|+.||+++..+++++++|...||++||++| ...++.|...
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 359999999999999999999999999999977 99999999999999999999999999999999 5556666543
Q ss_pred HHHHHHHHHH
Q 007882 188 KDAIVTWIKK 197 (586)
Q Consensus 188 ~~~l~~~i~~ 197 (586)
+.+.+.+..
T Consensus 96 -~~l~~~i~~ 104 (106)
T KOG0907|consen 96 -AELEKKIAK 104 (106)
T ss_pred -HHHHHHHHh
Confidence 466665543
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.68 E-value=7.3e-16 Score=127.06 Aligned_cols=87 Identities=18% Similarity=0.381 Sum_probs=78.1
Q ss_pred CeEEeCh-hhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007882 94 DVVVLKE-RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (586)
Q Consensus 94 ~v~~l~~-~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (586)
.+..++. ++|.+.+.++++++|.||++||++|+.+.|.|.++++++.+ +.|+.||+++.+.++++|+|.++||++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 4667777 89999999899999999999999999999999999988754 899999999999999999999999999
Q ss_pred EEeCCee-eeecC
Q 007882 173 FFVDGQH-KAYNG 184 (586)
Q Consensus 173 ~~~~g~~-~~~~g 184 (586)
+|++|+. .++.|
T Consensus 81 ~fk~G~~v~~~~g 93 (113)
T cd02989 81 LFKNGKTVDRIVG 93 (113)
T ss_pred EEECCEEEEEEEC
Confidence 9999943 45554
No 55
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=5.6e-16 Score=133.34 Aligned_cols=98 Identities=23% Similarity=0.436 Sum_probs=84.2
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc--HHHHHHcCCCCCcEEEEEe-C
Q 007882 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--NELAHEYDVQGFPTIYFFV-D 176 (586)
Q Consensus 100 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~-~ 176 (586)
...|+.++..+++++|+|||+||++|+.+.|.|.++++.+.+ .+.|+.||++.. ..++++|+|.++||+++|+ +
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 456778888899999999999999999999999999998866 466777766543 5889999999999999995 7
Q ss_pred C-eeeeecCCCCHHHHHHHHHHhcC
Q 007882 177 G-QHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 177 g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
| ...++.|....+.|.++|.+.+.
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 8 55688899999999999998874
No 56
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.68 E-value=2.3e-16 Score=130.50 Aligned_cols=102 Identities=33% Similarity=0.641 Sum_probs=87.2
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cc--cccCCCCcCcEEE
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NE--HHRAKSDGFPTIL 510 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~--~~--~~~~~i~~~Pt~~ 510 (586)
+..++.++|++.+.+.+++++|.||++||++|+.+.|.|+++++.+.+ .+.++.+|++. +. +.+++|.++||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678899999999988888999999999999999999999999999875 47777788776 32 4689999999999
Q ss_pred EEeCCCcc--cCccccccccCHHHHHHHHH
Q 007882 511 FFPAGNKS--FDPINVDVDRTVVALYKFLK 538 (586)
Q Consensus 511 ~~~~g~~~--~~~~~~~g~~~~~~l~~~i~ 538 (586)
+|++|+++ ..+..|.|.++.+.|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99988731 13468999999999999983
No 57
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.68 E-value=2.9e-16 Score=128.48 Aligned_cols=92 Identities=26% Similarity=0.406 Sum_probs=81.6
Q ss_pred hhHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCCceEEEEEeCCC----cHHHHHHcCCCCCcEEEE
Q 007882 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 101 ~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 173 (586)
+.|.++++++++++|.||++||++|+.+.|.+ .++++.+.+ ++.++.||+++ ...++++|+|.++||+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 56888889999999999999999999999988 578877765 69999999987 578999999999999999
Q ss_pred Ee--CC-eeeeecCCCCHHHHHHHH
Q 007882 174 FV--DG-QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 174 ~~--~g-~~~~~~g~~~~~~l~~~i 195 (586)
|+ +| ...++.|..+.+.|.++|
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHh
Confidence 98 67 567899999999998876
No 58
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.5e-16 Score=144.81 Aligned_cols=106 Identities=27% Similarity=0.508 Sum_probs=96.0
Q ss_pred CCeEEEeCcchhHHhhcc--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcE
Q 007882 433 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPT 508 (586)
Q Consensus 433 ~~v~~l~~~~f~~~v~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt 508 (586)
..|..+|..+|...|..+ ..||+|+||+|||++|+.+.|.+++++..+++ .+.++++||+.+. ...|+|+++||
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 449999999999998653 35999999999999999999999999999988 6888888888765 47999999999
Q ss_pred EEEEeCCCcccCccccccccCHHHHHHHHHhcCCC
Q 007882 509 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 543 (586)
Q Consensus 509 ~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 543 (586)
+++|++|+.+. .+.|....+.|.+||.++++.
T Consensus 101 V~af~dGqpVd---gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVD---GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCcc---ccCCCCcHHHHHHHHHHhcCh
Confidence 99999999997 899999999999999999987
No 59
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=8e-16 Score=129.13 Aligned_cols=98 Identities=19% Similarity=0.317 Sum_probs=81.6
Q ss_pred ChhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEE-EEe
Q 007882 99 KERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY-FFV 175 (586)
Q Consensus 99 ~~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~ 175 (586)
+..+|++.+. .+++++|.|||+||+||+.+.|.|.++++++++ .+.|+.||++++++++..|+|++.|+++ ||+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 4678888884 578999999999999999999999999999876 6888999999999999999999887777 889
Q ss_pred CCe-e-eeecC--------CCCHHHHHHHHHHhc
Q 007882 176 DGQ-H-KAYNG--------GRTKDAIVTWIKKKI 199 (586)
Q Consensus 176 ~g~-~-~~~~g--------~~~~~~l~~~i~~~~ 199 (586)
+|. . .+..| ..+.+.|.+-+...+
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 994 3 45666 456667766666554
No 60
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.67 E-value=6.8e-16 Score=124.73 Aligned_cols=94 Identities=22% Similarity=0.554 Sum_probs=79.6
Q ss_pred ChhhHHHHHhCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007882 99 KERNFSDVIENN--KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (586)
Q Consensus 99 ~~~~~~~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (586)
+.++|++.+... ++++|+||++||++|+.+.|.|.++++++.. .+.++.+|+++.++++++|+|.++||+++|++
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEELPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccCHHHHHhcCCccccEEEEEEC
Confidence 356788888765 9999999999999999999999999998733 79999999999999999999999999999999
Q ss_pred CeeeeecCCCCHHHHHHHH
Q 007882 177 GQHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 177 g~~~~~~g~~~~~~l~~~i 195 (586)
|+......+.+.+.|.+.|
T Consensus 78 g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGADPKELAKKV 96 (97)
T ss_pred CEEEEEEeCCCHHHHHHhh
Confidence 9655444335667776654
No 61
>PHA02278 thioredoxin-like protein
Probab=99.67 E-value=1.2e-16 Score=128.27 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=74.0
Q ss_pred cchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc------ccccCCCCcCcEEEEEeC
Q 007882 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------EHHRAKSDGFPTILFFPA 514 (586)
Q Consensus 441 ~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~------~~~~~~i~~~Pt~~~~~~ 514 (586)
++|.+.+ ..+++++|+|||+||++|+.+.|.++++++.+.. .+.++.+|++.+ .+.+++|.++||+++|++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 5677877 5789999999999999999999999999987544 344566666643 347899999999999999
Q ss_pred CCcccCccccccccCHHHHHHH
Q 007882 515 GNKSFDPINVDVDRTVVALYKF 536 (586)
Q Consensus 515 g~~~~~~~~~~g~~~~~~l~~~ 536 (586)
|+.+. ++.|..+.+.|.++
T Consensus 82 G~~v~---~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVK---KYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEE---EEeCCCCHHHHHhh
Confidence 99886 78888888888765
No 62
>PRK09381 trxA thioredoxin; Provisional
Probab=99.67 E-value=4.1e-16 Score=128.86 Aligned_cols=104 Identities=25% Similarity=0.506 Sum_probs=91.7
Q ss_pred CCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--ccCCCCcCcEEE
Q 007882 433 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 510 (586)
Q Consensus 433 ~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~~~~i~~~Pt~~ 510 (586)
..+..+++.+|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+.+ .+.++.+|++.+.. .++++.++||++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 45788899999998877789999999999999999999999999999876 47788888876553 789999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 511 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 511 ~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
+|++|+.+. ++.|..+.+.|.++|.+++
T Consensus 81 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAA---TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEE---EecCCCCHHHHHHHHHHhc
Confidence 999998764 7788889999999999876
No 63
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.67 E-value=3.5e-16 Score=127.33 Aligned_cols=98 Identities=26% Similarity=0.457 Sum_probs=83.8
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 511 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~ 511 (586)
.|..++.++|++.+ . + .++|.|||+||++|+.+.|.|++++..++. .++.++.+|++.+. +.+++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~-~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-E-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 47789999999876 3 2 389999999999999999999999997654 36889999988765 47899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHHHh
Q 007882 512 FPAGNKSFDPINVDVDRTVVALYKFLKK 539 (586)
Q Consensus 512 ~~~g~~~~~~~~~~g~~~~~~l~~~i~~ 539 (586)
|++|+. . +|.|.++.++|.+||.+
T Consensus 78 ~~~g~~-~---~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVF-R---RYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCE-E---EecCCCCHHHHHHHHhC
Confidence 998864 2 78999999999999864
No 64
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.66 E-value=2.9e-16 Score=129.53 Aligned_cols=100 Identities=19% Similarity=0.361 Sum_probs=84.5
Q ss_pred EEEeCcchhHHhhc--cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007882 436 KIVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 511 (586)
Q Consensus 436 ~~l~~~~f~~~v~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~ 511 (586)
..++.++|.+.+.. .+++++|.|||+||++|+.+.|.|.++++.+.+ .++.++.+|++.+. +.+++|+++||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 34677788876643 578999999999999999999999999999975 25888888887644 57899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHHHh
Q 007882 512 FPAGNKSFDPINVDVDRTVVALYKFLKK 539 (586)
Q Consensus 512 ~~~g~~~~~~~~~~g~~~~~~l~~~i~~ 539 (586)
|++|+.+. ++.|..+.+.|.+||.+
T Consensus 86 ~~~g~~~~---~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTF---YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEE---EecCCCCHHHHHHHHhc
Confidence 99997653 67899999999999975
No 65
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.65 E-value=1e-15 Score=154.32 Aligned_cols=106 Identities=30% Similarity=0.592 Sum_probs=92.5
Q ss_pred CCCCeEEeChhhHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-HHH-HHcCC
Q 007882 91 DDKDVVVLKERNFSDVIE---NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-ELA-HEYDV 165 (586)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~---~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i 165 (586)
++..|+.|+..||++.++ .++++||.|||+||++|+.+.|.|+++++++++ .++.|+.|||+.+. .++ ++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~--~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG--SGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCcEEEEEECCCCccHHHHHHcCC
Confidence 566899999999999885 789999999999999999999999999999876 24889999998763 454 78999
Q ss_pred CCCcEEEEEeCC--eeeeec-CCCCHHHHHHHHHHh
Q 007882 166 QGFPTIYFFVDG--QHKAYN-GGRTKDAIVTWIKKK 198 (586)
Q Consensus 166 ~~~Pt~~~~~~g--~~~~~~-g~~~~~~l~~~i~~~ 198 (586)
.++||+++|++| ....|. |.++.+.|..||+..
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999999999988 457897 589999999999753
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.65 E-value=1.3e-14 Score=135.05 Aligned_cols=182 Identities=17% Similarity=0.242 Sum_probs=129.3
Q ss_pred CCeEEEEEEC---CCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCee--eeecC
Q 007882 110 NKFVMVEFYA---PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQH--KAYNG 184 (586)
Q Consensus 110 ~~~~lv~f~a---~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~--~~~~g 184 (586)
+...++.|++ +||++|+.+.|.++++++.+.. ..+.++.+|.+++++++++|+|.++||+++|++|.. .++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4556777888 9999999999999999998843 246677788779999999999999999999999943 48999
Q ss_pred CCCHHHHHHHHHHhcCC--CcccccchhHHHHhcccC-CeEEEEEecCCCCc---chHHHHHhccccCceeEEec---CC
Q 007882 185 GRTKDAIVTWIKKKIGP--GIYNITTLDEAERVLTSE-TKVVLGYLNSLVGS---ESEVLADASRLEDDVNFYQT---TN 255 (586)
Q Consensus 185 ~~~~~~l~~~i~~~~~~--~~~~i~~~~~l~~~~~~~-~~~~i~~~~~~~~~---~~~~f~~~~~~~~~~~F~~~---~~ 255 (586)
..+.+.+.+||...+.- ....+ +.+..+.+.... ++.++.|....... ....+..++.....+.|..+ ..
T Consensus 97 ~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~ 175 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN 175 (215)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC
Confidence 99999999999887521 22233 323333333333 34444455555432 22333444433456666543 56
Q ss_pred hhHHHhcCCCCCCCCCeeEEeccCCcceecccCCCChhHHHHHHHh
Q 007882 256 PDVAKIFHLDSKVNRPALVMVKKETEKISYFDGKFDKSTIADFVFS 301 (586)
Q Consensus 256 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 301 (586)
++++.++++.. .|++++++... .+.|....+++.+||..
T Consensus 176 ~~~~~~~~V~~---vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 176 PDLAEKYGVMS---VPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHhCCcc---CCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 78999999986 79999876432 27788788899999864
No 67
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.64 E-value=1e-15 Score=126.11 Aligned_cols=101 Identities=32% Similarity=0.678 Sum_probs=85.0
Q ss_pred CeEEEeCcchhHHhh--ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-c--cc-cCCCCcCc
Q 007882 434 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-E--HH-RAKSDGFP 507 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~-~--~~-~~~i~~~P 507 (586)
.|..++.++|+..+. +.+++++|.||++||++|+.+.|.|.++++.+++ ..+.++.+|++.+ . +. .++++.+|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 367888999999884 4578999999999999999999999999999885 3588999998873 2 33 58999999
Q ss_pred EEEEEeCCCcccCccccccc-cCHHHHHHHH
Q 007882 508 TILFFPAGNKSFDPINVDVD-RTVVALYKFL 537 (586)
Q Consensus 508 t~~~~~~g~~~~~~~~~~g~-~~~~~l~~~i 537 (586)
|+++|++|.. .+..|.|. ++.+.|+.||
T Consensus 81 ti~~f~~~~~--~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSR--QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCC--CceeccCCCCCHHHHHhhC
Confidence 9999988764 35689994 8999999985
No 68
>PLN02309 5'-adenylylsulfate reductase
Probab=99.64 E-value=1.6e-15 Score=153.01 Aligned_cols=107 Identities=28% Similarity=0.594 Sum_probs=94.8
Q ss_pred CCCCCeEEeChhhHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC-CcHHHHH-HcC
Q 007882 90 IDDKDVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAH-EYD 164 (586)
Q Consensus 90 ~~~~~v~~l~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~-~~~ 164 (586)
.++..|+.|+.++|++++ ..++++||+|||+||++|+.+.|.|.++++.+.+ .++.|+.|||+ .+..+|. +|+
T Consensus 342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~--~~V~f~kVD~d~~~~~la~~~~~ 419 (457)
T PLN02309 342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG--SGVKVAKFRADGDQKEFAKQELQ 419 (457)
T ss_pred cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCeEEEEEECCCcchHHHHhhCC
Confidence 355689999999999987 3689999999999999999999999999999875 35999999999 7788886 699
Q ss_pred CCCCcEEEEEeCC--eeeeecC-CCCHHHHHHHHHHh
Q 007882 165 VQGFPTIYFFVDG--QHKAYNG-GRTKDAIVTWIKKK 198 (586)
Q Consensus 165 i~~~Pt~~~~~~g--~~~~~~g-~~~~~~l~~~i~~~ 198 (586)
|.++||+++|++| ....|.| .++.+.|..||+..
T Consensus 420 I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999977 5678985 69999999999864
No 69
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.64 E-value=8.8e-16 Score=123.71 Aligned_cols=93 Identities=20% Similarity=0.407 Sum_probs=81.1
Q ss_pred cchhHHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCc
Q 007882 441 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 441 ~~f~~~v~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~ 517 (586)
++|++.+.++ +++++|.||++||++|+.+.|.+++++..+.+ .+.++.+|++.+. +.+++|.++|++++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3688888655 68999999999999999999999999999876 5888999988865 47899999999999999887
Q ss_pred ccCccccccccCHHHHHHHHH
Q 007882 518 SFDPINVDVDRTVVALYKFLK 538 (586)
Q Consensus 518 ~~~~~~~~g~~~~~~l~~~i~ 538 (586)
+. ++.|..+.+.|.+||+
T Consensus 79 ~~---~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VD---GFQGAQPEEQLRQMLD 96 (96)
T ss_pred ee---eecCCCCHHHHHHHhC
Confidence 64 7889999999999873
No 70
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.64 E-value=8.1e-16 Score=125.63 Aligned_cols=98 Identities=33% Similarity=0.663 Sum_probs=84.8
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNE--HHRAKSDGFPTILF 511 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~ 511 (586)
+..+++++|+..+.+ + +++|.||++||++|+.+.|.|.++++.+.+ ...+.++.+|++.+. +..++|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567889999998843 3 599999999999999999999999999876 346899999998764 57899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHH
Q 007882 512 FPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 512 ~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
|++|+.+. +|.|.++.+.|.+||
T Consensus 80 ~~~g~~~~---~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVD---KYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeee---EeeCCCCHHHHHhhC
Confidence 99998653 899999999999885
No 71
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.64 E-value=2.7e-16 Score=126.82 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=67.6
Q ss_pred CcchhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCC
Q 007882 440 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGN 516 (586)
Q Consensus 440 ~~~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~ 516 (586)
.++|++.+.. .++++||.|||+||++|+.|.|.+++++.++.+ .+.|+++|++.+. ..+++|+++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3567887753 578999999999999999999999999999876 4778888888776 4789999999999999999
Q ss_pred ccc
Q 007882 517 KSF 519 (586)
Q Consensus 517 ~~~ 519 (586)
.+.
T Consensus 80 ~v~ 82 (114)
T cd02954 80 HMK 82 (114)
T ss_pred EEE
Confidence 875
No 72
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.64 E-value=7.6e-16 Score=141.22 Aligned_cols=109 Identities=27% Similarity=0.561 Sum_probs=93.2
Q ss_pred CCCeEEEeCcchhHHhhcc----CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCc
Q 007882 432 DGDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDG 505 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v~~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~ 505 (586)
...+..++.++|++.+..+ +++++|+|||+||++|+.+.|.|+++++.+++ .+.++.+|++.+. +.+++|++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3568999999999988543 57999999999999999999999999999876 5888999988765 47899999
Q ss_pred CcEEEEEeCCCcccCccccccccCHHHHHHHHHhcCCCCc
Q 007882 506 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 545 (586)
Q Consensus 506 ~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 545 (586)
+||+++|++|+.+. .+.|.++.++|.+|+.++.+...
T Consensus 107 ~PTl~~f~~G~~v~---~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 107 YPTLLLFDKGKMYQ---YEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred CCEEEEEECCEEEE---eeCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999997653 45578999999999999886443
No 73
>PTZ00051 thioredoxin; Provisional
Probab=99.64 E-value=1.8e-15 Score=122.44 Aligned_cols=89 Identities=31% Similarity=0.686 Sum_probs=77.8
Q ss_pred ChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCe
Q 007882 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 99 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 178 (586)
+.++|..+++.+++++|+||++||++|+.+.|.|.++++.+.+ +.|+.||+++...++++|+|.++||+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 3578889999999999999999999999999999999987644 899999999999999999999999999999994
Q ss_pred -eeeecCCCCHHHHH
Q 007882 179 -HKAYNGGRTKDAIV 192 (586)
Q Consensus 179 -~~~~~g~~~~~~l~ 192 (586)
..++.|. ..+.|.
T Consensus 83 ~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 83 VVDTLLGA-NDEALK 96 (98)
T ss_pred EEEEEeCC-CHHHhh
Confidence 4577774 555554
No 74
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.64 E-value=5.7e-16 Score=124.82 Aligned_cols=89 Identities=24% Similarity=0.428 Sum_probs=74.4
Q ss_pred chhHHhh-ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-ccc--cccCCCCcCcEEEEEeCCCc
Q 007882 442 NFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNE--HHRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 442 ~f~~~v~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~-~~~--~~~~~i~~~Pt~~~~~~g~~ 517 (586)
++.+.+. .++++++|.|||+||++|+.+.|.|+++++.+++ +.++.+|.+ .+. +.+++|.++||+++|++| .
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~ 83 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P 83 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c
Confidence 3444443 4678999999999999999999999999999864 678888887 333 478999999999999988 5
Q ss_pred ccCccccccccCHHHHHHHH
Q 007882 518 SFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 518 ~~~~~~~~g~~~~~~l~~~i 537 (586)
+ .+|.|.++.+.|.+|+
T Consensus 84 ~---~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 R---VRYNGTRTLDSLAAFY 100 (100)
T ss_pred e---eEecCCCCHHHHHhhC
Confidence 4 3899999999999985
No 75
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.64 E-value=2e-15 Score=120.35 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=69.8
Q ss_pred hhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007882 100 ERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 100 ~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (586)
.+.|++.+. ++++++|.|+|+||+||+.+.|.|.++++++++ .+.|+.||.++.+++++.|+|++.||++||++|
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 356777665 589999999999999999999999999999865 499999999999999999999999999999999
Q ss_pred eee
Q 007882 178 QHK 180 (586)
Q Consensus 178 ~~~ 180 (586)
+..
T Consensus 79 kh~ 81 (114)
T cd02986 79 QHM 81 (114)
T ss_pred cEE
Confidence 443
No 76
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.63 E-value=1.2e-15 Score=124.86 Aligned_cols=99 Identities=35% Similarity=0.668 Sum_probs=87.1
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEE
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFF 512 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~ 512 (586)
+..++.++|.+.+.+.+.+++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++.+. +.+++|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 567889999999877777899999999999999999999999999876 5888888887765 478999999999999
Q ss_pred eCCCcccCccccccccCHHHHHHHH
Q 007882 513 PAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 513 ~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
++|+. .+..|.|.++.++|.+|+
T Consensus 80 ~~~~~--~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKN--SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCc--ceeecCCCCCHHHHHHHh
Confidence 98844 456899999999999997
No 77
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.63 E-value=2.5e-15 Score=123.49 Aligned_cols=101 Identities=44% Similarity=0.860 Sum_probs=87.9
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc-cc--cccCCCCcCcEEEE
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NE--HHRAKSDGFPTILF 511 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~-~~--~~~~~i~~~Pt~~~ 511 (586)
+..+++++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+.....+.++.+|++. +. +.+++|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678899999988667779999999999999999999999999998754579999999988 44 57899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHH
Q 007882 512 FPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 512 ~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
|.+|.. ....|.|.++.++|.+||
T Consensus 82 ~~~~~~--~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGST--EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCC--CccccCCccCHHHHHhhC
Confidence 988753 345899999999999985
No 78
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.63 E-value=4.3e-15 Score=119.61 Aligned_cols=87 Identities=28% Similarity=0.552 Sum_probs=79.2
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eeeeecCC
Q 007882 107 IENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNGG 185 (586)
Q Consensus 107 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~g~ 185 (586)
.+.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.+|++++++++.+++|.++||+++|++| ...++.|.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~ 86 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGV 86 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCC
Confidence 35688999999999999999999999999998865 699999999999999999999999999999999 55688899
Q ss_pred CCHHHHHHHHH
Q 007882 186 RTKDAIVTWIK 196 (586)
Q Consensus 186 ~~~~~l~~~i~ 196 (586)
.+.+.+.+|++
T Consensus 87 ~~~~~~~~~l~ 97 (97)
T cd02949 87 KMKSEYREFIE 97 (97)
T ss_pred ccHHHHHHhhC
Confidence 99999988873
No 79
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.61 E-value=3.1e-15 Score=122.18 Aligned_cols=100 Identities=47% Similarity=0.925 Sum_probs=87.4
Q ss_pred EeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCC
Q 007882 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAG 515 (586)
Q Consensus 438 l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g 515 (586)
|++++|++.+. .+++++|+||++||++|+.+.|.|++++..+.+...+.++.+|++.+. +.+++|+++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46678999875 788999999999999999999999999999887556999999988765 478999999999999988
Q ss_pred CcccCccccccccCHHHHHHHHHhcC
Q 007882 516 NKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 516 ~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
+.. ..|.|..+.++|..||++++
T Consensus 80 ~~~---~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKP---VDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Ccc---eeecCCCCHHHHHHHHHhcC
Confidence 753 48999999999999999864
No 80
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.61 E-value=2.7e-15 Score=121.46 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=80.8
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-----c--cccccC
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----T--NEHHRA 501 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~--~~C~---~C~~~~~~~~~~~~~~~~~~~i~~~~id~~-----~--~~~~~~ 501 (586)
.+..|+..||++.| ..++.+||.||| |||+ +|+.+.|.+.+.+. .|.++.||++ . ..+.+|
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHh
Confidence 36779999999987 667889999999 8888 67776666665443 3889999994 2 246899
Q ss_pred CCC--cCcEEEEEeCCCcccCccccccc-cCHHHHHHHHHhc
Q 007882 502 KSD--GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKN 540 (586)
Q Consensus 502 ~i~--~~Pt~~~~~~g~~~~~~~~~~g~-~~~~~l~~~i~~~ 540 (586)
+|+ ++||+++|++|... .+..|.|. ++.+.|++||.++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~-~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFE-NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcC-CCccCCCCcccHHHHHHHHHhc
Confidence 999 99999999998533 35689997 9999999999987
No 81
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=2.3e-15 Score=122.44 Aligned_cols=94 Identities=22% Similarity=0.265 Sum_probs=77.6
Q ss_pred CcchhHHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----cccCCCCcCcEEEEEe
Q 007882 440 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----HHRAKSDGFPTILFFP 513 (586)
Q Consensus 440 ~~~f~~~v~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----~~~~~i~~~Pt~~~~~ 513 (586)
.++|++.+.+. ++++||.|||+||++|+.+.|.|+++++.+. .+.|+.+|.+.+. +.+++|+++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 45788877543 7899999999999999999999999999983 5889999988753 3689999999999999
Q ss_pred CCCcccCccccccccCHHHHHHHHHhc
Q 007882 514 AGNKSFDPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 514 ~g~~~~~~~~~~g~~~~~~l~~~i~~~ 540 (586)
+|+.+. ++.| ....+|.+-+..+
T Consensus 80 ~G~~v~---~~~G-~~~~~l~~~~~~~ 102 (103)
T cd02985 80 DGEKIH---EEEG-IGPDELIGDVLYY 102 (103)
T ss_pred CCeEEE---EEeC-CCHHHHHHHHHhc
Confidence 998875 7777 5567777776553
No 82
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.60 E-value=5.2e-15 Score=121.31 Aligned_cols=99 Identities=30% Similarity=0.636 Sum_probs=85.1
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cc--cccCCCCcCcEEE
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NE--HHRAKSDGFPTIL 510 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~--~~--~~~~~i~~~Pt~~ 510 (586)
+..++..+|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.....+.++.+|++. +. +.+++|+++||++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678888999877 45669999999999999999999999999998754568899999987 33 3688999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHH
Q 007882 511 FFPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 511 ~~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
+|++|+.+. ++.|..+.+.|.+||
T Consensus 81 ~~~~g~~~~---~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVE---KYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeE---EeCCCCCHHHHHhhC
Confidence 999998653 889999999999885
No 83
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.60 E-value=4.2e-15 Score=120.70 Aligned_cols=96 Identities=21% Similarity=0.434 Sum_probs=79.5
Q ss_pred EeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-cccCCCCcCcEEEEEeCCC
Q 007882 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGN 516 (586)
Q Consensus 438 l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-~~~~~i~~~Pt~~~~~~g~ 516 (586)
-+.++|.+.+ +++++++|+|||+||++|+.+.|.+.+++..+.+ ..+.|+.+|.+... +.+++|+++||+++|++|+
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence 3567888876 5688999999999999999999999999998874 34778888877332 4789999999999999998
Q ss_pred cccCccccccccCHHHHHHHHHh
Q 007882 517 KSFDPINVDVDRTVVALYKFLKK 539 (586)
Q Consensus 517 ~~~~~~~~~g~~~~~~l~~~i~~ 539 (586)
.+. +..| .+.+.|.++|.+
T Consensus 83 ~~~---~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVA---VIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEE---EEec-CChHHHHHHHhh
Confidence 874 5666 588899998865
No 84
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.7e-15 Score=119.56 Aligned_cols=85 Identities=28% Similarity=0.533 Sum_probs=71.7
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cccccCCCCcCcEEEEEeCCCcccCcccccc
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEHHRAKSDGFPTILFFPAGNKSFDPINVDV 526 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~--~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g 526 (586)
..+++++|.|||+|||+|+.+.|.+.+++.++.+ +.|+.+|++. ..+..++|.++|||+||++|+.+. ++.|
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG 92 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD---EVVG 92 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence 3468999999999999999999999999999876 8899999885 335789999999999999999875 6667
Q ss_pred ccCHHHHHHHHHhc
Q 007882 527 DRTVVALYKFLKKN 540 (586)
Q Consensus 527 ~~~~~~l~~~i~~~ 540 (586)
.+..++.+.+.++
T Consensus 93 -a~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 -ANKAELEKKIAKH 105 (106)
T ss_pred -CCHHHHHHHHHhc
Confidence 3444787777654
No 85
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.5e-15 Score=148.26 Aligned_cols=109 Identities=33% Similarity=0.664 Sum_probs=97.9
Q ss_pred CCCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCccc--cccCCCCcCcE
Q 007882 432 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--HHRAKSDGFPT 508 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~i~~~~id~~~~~--~~~~~i~~~Pt 508 (586)
...|..++.++|.+.+ ..+..++|.||||||+||+++.|.+.+.|..+... ..+.++.||+..+. +.+|.|++|||
T Consensus 24 ~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred ccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 5679999999999987 56788999999999999999999999999999875 47999999998864 58999999999
Q ss_pred EEEEeCCCcccCccccccccCHHHHHHHHHhcCCCC
Q 007882 509 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 544 (586)
Q Consensus 509 ~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 544 (586)
+.+|++|+. +..|.|+|+.+.|+.||.+..+..
T Consensus 103 lkiFrnG~~---~~~Y~G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 103 LKIFRNGRS---AQDYNGPREADGIVKWLKKQSGPA 135 (493)
T ss_pred EEEEecCCc---ceeccCcccHHHHHHHHHhccCCC
Confidence 999999986 238999999999999999988754
No 86
>PRK10996 thioredoxin 2; Provisional
Probab=99.59 E-value=7.6e-15 Score=126.05 Aligned_cols=104 Identities=23% Similarity=0.555 Sum_probs=90.0
Q ss_pred CCCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEE
Q 007882 432 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTI 509 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~ 509 (586)
.+.+..++..+|++.+ +.+++++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++.+. ..+++|.++||+
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 4556678888999876 5689999999999999999999999999998765 5889999988765 478999999999
Q ss_pred EEEeCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 510 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 510 ~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
++|++|+.+. ++.|..+.+.|.+||.+++
T Consensus 111 ii~~~G~~v~---~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVD---MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEE---EEcCCCCHHHHHHHHHHhC
Confidence 9999998875 7789999999999998753
No 87
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.58 E-value=1.6e-14 Score=119.23 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=80.6
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC---ee
Q 007882 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG---QH 179 (586)
Q Consensus 103 ~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g---~~ 179 (586)
|.+.+.+...++|.||++||++|+.+.|.+.++++.+ + .+.+..||.++++.++.+|+|.++||+++|++| ..
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 4455556677889999999999999999999999875 3 599999999999999999999999999999876 23
Q ss_pred eeecCCCCHHHHHHHHHHhc
Q 007882 180 KAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 180 ~~~~g~~~~~~l~~~i~~~~ 199 (586)
.++.|......+.+||..++
T Consensus 91 ~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred EEEEecCchHHHHHHHHHHH
Confidence 47889999999999998765
No 88
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.58 E-value=4.5e-14 Score=131.34 Aligned_cols=177 Identities=12% Similarity=0.085 Sum_probs=127.1
Q ss_pred cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCCCCCHHHHHHHHHHH
Q 007882 334 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 413 (586)
Q Consensus 334 ~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~ 413 (586)
..|+...+.+.++|..+. ++.+..++.+... ...++..||+.. .|+++++..+......+.|..+.+.+..|++.+
T Consensus 35 ~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~-~~~l~~~~~V~~--~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 35 QYCKETEQLLEELSEVSP-KLKLEIYDFDTPE-DKEEAEKYGVER--VPTTIILEEGKDGGIRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred CchHHHHHHHHHHHhhCC-CceEEEEecCCcc-cHHHHHHcCCCc--cCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHH
Confidence 579999999999999984 5555555554322 557889999976 688888876543334667778888999999887
Q ss_pred hcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 007882 414 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 492 (586)
Q Consensus 414 ~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id 492 (586)
+.= ... ...++..+.+.+ ...+++ +++.||++||++|+.+.|.+++++... ..+.+..+|
T Consensus 111 ~~~-~~~--------------~~~L~~~~~~~l-~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~---~~i~~~~vD 171 (215)
T TIGR02187 111 VRV-SQG--------------EPGLSEKTVELL-QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN---DKILGEMIE 171 (215)
T ss_pred HHh-cCC--------------CCCCCHHHHHHH-HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc---CceEEEEEe
Confidence 531 000 012333333332 233444 555599999999999999999999874 257777888
Q ss_pred CCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHh
Q 007882 493 GTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 539 (586)
Q Consensus 493 ~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~ 539 (586)
.+.+. +.+++|.++||++++.+|. .+.|..+.++|.+||.+
T Consensus 172 ~~~~~~~~~~~~V~~vPtl~i~~~~~------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 172 ANENPDLAEKYGVMSVPKIVINKGVE------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CCCCHHHHHHhCCccCCEEEEecCCE------EEECCCCHHHHHHHHHh
Confidence 77655 4789999999999986653 26788899999999875
No 89
>PTZ00102 disulphide isomerase; Provisional
Probab=99.58 E-value=1.4e-14 Score=153.16 Aligned_cols=116 Identities=32% Similarity=0.659 Sum_probs=101.8
Q ss_pred CCCCCCCCeEEeChhhHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCC
Q 007882 87 EPEIDDKDVVVLKERNFSDVI-ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDV 165 (586)
Q Consensus 87 ~~~~~~~~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i 165 (586)
.|......+..+++.+|++.+ +.+++++|+|||+||++|+.+.|.|.++++.+++. ..+.++.+||+.+...++.+++
T Consensus 351 ~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~~~~~~~~v 429 (477)
T PTZ00102 351 IPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANETPLEEFSW 429 (477)
T ss_pred CCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCccchhcCCC
Confidence 344456789999999999874 67899999999999999999999999999988652 3699999999999999999999
Q ss_pred CCCcEEEEEeCC-e-eeeecCCCCHHHHHHHHHHhcCCCc
Q 007882 166 QGFPTIYFFVDG-Q-HKAYNGGRTKDAIVTWIKKKIGPGI 203 (586)
Q Consensus 166 ~~~Pt~~~~~~g-~-~~~~~g~~~~~~l~~~i~~~~~~~~ 203 (586)
+++||+++|++| . ...|.|.++.+.|.+||.++...+.
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred cccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 999999999977 3 4689999999999999999886533
No 90
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=2.3e-14 Score=127.46 Aligned_cols=88 Identities=24% Similarity=0.415 Sum_probs=76.7
Q ss_pred CCCeEEeCh-hhHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCC
Q 007882 92 DKDVVVLKE-RNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG 167 (586)
Q Consensus 92 ~~~v~~l~~-~~~~~~~~~~---~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 167 (586)
-..+.+++. ++|.+.+... .+++|.||++||++|+.+.|.|.+++.++.. +.|+.||+++. .++.+|+|.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch-hhHHhCCCCC
Confidence 456889998 9999988643 4999999999999999999999999998854 99999999987 8999999999
Q ss_pred CcEEEEEeCCee-eeecC
Q 007882 168 FPTIYFFVDGQH-KAYNG 184 (586)
Q Consensus 168 ~Pt~~~~~~g~~-~~~~g 184 (586)
+||+++|++|+. .++.|
T Consensus 136 vPTlllyk~G~~v~~~vG 153 (175)
T cd02987 136 LPALLVYKGGELIGNFVR 153 (175)
T ss_pred CCEEEEEECCEEEEEEec
Confidence 999999999944 34544
No 91
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.58 E-value=1.5e-14 Score=119.68 Aligned_cols=102 Identities=32% Similarity=0.605 Sum_probs=82.6
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCcc----ccccCCCCcCcE
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTN----EHHRAKSDGFPT 508 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~i~~~~id~~~~----~~~~~~i~~~Pt 508 (586)
++..++.++|++.+.+++++++|.||++||++|+.+.|.|++++..+++. ..+.++.+|++.. .+.+++|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999999887789999999999999999999999999988653 3588999997542 247899999999
Q ss_pred EEEEeCCCccc-Cccccccc-cCHHHHHH
Q 007882 509 ILFFPAGNKSF-DPINVDVD-RTVVALYK 535 (586)
Q Consensus 509 ~~~~~~g~~~~-~~~~~~g~-~~~~~l~~ 535 (586)
+++|++|.... ....|.|. +..+++..
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 99998887531 13566674 66666643
No 92
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.57 E-value=3e-14 Score=118.72 Aligned_cols=98 Identities=13% Similarity=0.223 Sum_probs=78.3
Q ss_pred CCeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-----------HHHH
Q 007882 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----------ELAH 161 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------~l~~ 161 (586)
+++..++..++.+.+.+++.++|+|+++|||+|+.+.|.|.+++++. ++.++.||.+.++ ++.+
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRS 80 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999872 3556667666432 5556
Q ss_pred HcC----CCCCcEEEEEeCC-eeeeecC-CCCHHHHHHHH
Q 007882 162 EYD----VQGFPTIYFFVDG-QHKAYNG-GRTKDAIVTWI 195 (586)
Q Consensus 162 ~~~----i~~~Pt~~~~~~g-~~~~~~g-~~~~~~l~~~i 195 (586)
+++ |.++||+++|++| ...+..| ..+.+.|.+|+
T Consensus 81 ~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 81 RFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred HcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 665 5569999999999 4456667 45688888776
No 93
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.56 E-value=1.1e-14 Score=120.63 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=75.8
Q ss_pred CCeEEEeCcchhHHhhcc--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-ccccCCCCcCcEE
Q 007882 433 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRAKSDGFPTI 509 (586)
Q Consensus 433 ~~v~~l~~~~f~~~v~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~-~~~~~~i~~~Pt~ 509 (586)
+.+..++.++|.+.+.+. +++++|+||++||++|+.+.|.|++++..+.+ +.|+++|++.+ .+.+++|.++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhhHHHHhcCCCcCCEE
Confidence 567889999999998665 38999999999999999999999999999754 78899998874 3478999999999
Q ss_pred EEEeCCCcccCcccccc
Q 007882 510 LFFPAGNKSFDPINVDV 526 (586)
Q Consensus 510 ~~~~~g~~~~~~~~~~g 526 (586)
++|++|+.+. ++.|
T Consensus 81 ~~f~~G~~v~---~~~G 94 (113)
T cd02957 81 LVYKNGELID---NIVG 94 (113)
T ss_pred EEEECCEEEE---EEec
Confidence 9999998875 4544
No 94
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.56 E-value=1.7e-14 Score=115.42 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=82.5
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEE
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTI 509 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~ 509 (586)
....++..+|++.+ ..+.+++|.||++| |++|+.+.|.|.++++.+.+ .+.|+.+|++.+. +.+|+|+++||+
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTl 87 (111)
T cd02965 11 GWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPAL 87 (111)
T ss_pred CCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEE
Confidence 35678999999877 77899999999997 99999999999999999876 5778888887765 478999999999
Q ss_pred EEEeCCCcccCccccccccCHHHHH
Q 007882 510 LFFPAGNKSFDPINVDVDRTVVALY 534 (586)
Q Consensus 510 ~~~~~g~~~~~~~~~~g~~~~~~l~ 534 (586)
++|++|+.+. ++.|..+.+++.
T Consensus 88 i~fkdGk~v~---~~~G~~~~~e~~ 109 (111)
T cd02965 88 LFFRDGRYVG---VLAGIRDWDEYV 109 (111)
T ss_pred EEEECCEEEE---EEeCccCHHHHh
Confidence 9999999885 777888877765
No 95
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.56 E-value=2.1e-14 Score=116.99 Aligned_cols=98 Identities=30% Similarity=0.557 Sum_probs=84.9
Q ss_pred eCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCC
Q 007882 439 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGN 516 (586)
Q Consensus 439 ~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~ 516 (586)
+.++|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+.+ ++.++.+|++.+. +.++++.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 55688888876677999999999999999999999999988864 5889999988765 4789999999999999988
Q ss_pred cccCccccccccCHHHHHHHHHhcC
Q 007882 517 KSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 517 ~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
... .+.|..+.+.|.+||.+++
T Consensus 80 ~~~---~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVD---RSVGALPKAALKQLINKNL 101 (101)
T ss_pred Eee---eecCCCCHHHHHHHHHhhC
Confidence 764 6778889999999998753
No 96
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.56 E-value=4.7e-14 Score=119.59 Aligned_cols=97 Identities=21% Similarity=0.422 Sum_probs=81.5
Q ss_pred hhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhhcCCCceEEEEEeCCCc-------------HHHHHHc
Q 007882 101 RNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYA---AAATELKSANESVVLAKVDATEE-------------NELAHEY 163 (586)
Q Consensus 101 ~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~p~~~---~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~ 163 (586)
+.+..+.+++ ++++|+||++||++|+.+.|.+. .+.+.+.+ ++.++.||.+.+ ..++.+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4567788889 99999999999999999999885 55556654 688999998764 6899999
Q ss_pred CCCCCcEEEEEe-C-C-eeeeecCCCCHHHHHHHHHHhcC
Q 007882 164 DVQGFPTIYFFV-D-G-QHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 164 ~i~~~Pt~~~~~-~-g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
+|.++||+++|. + | ...++.|..+.+.+.++|...+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999997 5 5 45688899999999999887764
No 97
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.6e-14 Score=140.11 Aligned_cols=223 Identities=22% Similarity=0.362 Sum_probs=141.8
Q ss_pred CCeEEeChhhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc--HHHHHHcCCCCCc
Q 007882 93 KDVVVLKERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--NELAHEYDVQGFP 169 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P 169 (586)
.+|+.|+.++|+.++... +..+|.||++|||+|+++.|.|+++++.+.....-+.++.|||.+. ..+|++++|+++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 679999999999988654 4889999999999999999999999999999888899999999864 6899999999999
Q ss_pred EEEEEeCC-ee----eeecCCCCHHHHHHHHHHhc-----------CC---CcccccchhHHHHhccc-CCeEEEEEecC
Q 007882 170 TIYFFVDG-QH----KAYNGGRTKDAIVTWIKKKI-----------GP---GIYNITTLDEAERVLTS-ETKVVLGYLNS 229 (586)
Q Consensus 170 t~~~~~~g-~~----~~~~g~~~~~~l~~~i~~~~-----------~~---~~~~i~~~~~l~~~~~~-~~~~~i~~~~~ 229 (586)
++.+|..+ +. ..+.|.....++...+.+.+ -| ++..-++.+++.+...+ .+.+.|++-..
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~ 198 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFETE 198 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEecC
Confidence 99999644 22 34556555566655555433 22 23344555666665544 34555555444
Q ss_pred CCCcchHHHHHhccccCceeEEecCChhHHHhcCCCCCCCCCeeEEeccCCcceecccC---CCChhHHHHHHHh---cC
Q 007882 230 LVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFDG---KFDKSTIADFVFS---NK 303 (586)
Q Consensus 230 ~~~~~~~~f~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g---~~~~~~i~~fi~~---~~ 303 (586)
........+...... ..+....+-+.+....+++.. .+.|..+++|+.......-.+ +.-...|.++|-. ..
T Consensus 199 ~s~lg~~~~l~~l~~-~~v~vr~~~d~q~~~~~~l~~-~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~a~ 276 (606)
T KOG1731|consen 199 PSDLGWANLLNDLPS-KQVGVRARLDTQNFPLFGLKP-DNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNEAS 276 (606)
T ss_pred CcccHHHHHHhhccC-CCcceEEEecchhccccccCC-CCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCccccC
Confidence 333344444333322 222233333333322333222 246777888876644332222 2234677777754 34
Q ss_pred CCceeecCCCcccc
Q 007882 304 LPLVTIFTRENAPS 317 (586)
Q Consensus 304 ~p~v~~lt~~~~~~ 317 (586)
.|.+...+..+...
T Consensus 277 ~pt~~p~~~~~~~~ 290 (606)
T KOG1731|consen 277 GPTLHPITATTAAP 290 (606)
T ss_pred CCCcCcccccccch
Confidence 55565555443443
No 98
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.55 E-value=1.1e-13 Score=125.50 Aligned_cols=86 Identities=17% Similarity=0.326 Sum_probs=70.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-----------------------HHHHHcCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----------------------ELAHEYDV 165 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i 165 (586)
++++++|+||++||++|+.++|.+.+++++ ++.++.|+.+++. .+++.|++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 689999999999999999999999888642 4677778764432 34557899
Q ss_pred CCCcEEEEEe-CC-eeeeecCCCCHHHHHHHHHHhcC
Q 007882 166 QGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 166 ~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
.++|++++++ +| ....+.|..+.+.+.++|+..+.
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999996 88 45788999999999999888764
No 99
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3e-14 Score=126.24 Aligned_cols=99 Identities=27% Similarity=0.529 Sum_probs=85.8
Q ss_pred ChhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007882 99 KERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (586)
Q Consensus 99 ~~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (586)
++..|+..+. .++.++|.|+|+||+||+...|.|..++.+|.+ .+|..||.++.+..+..+||.+.||+++|++
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~taa~~gV~amPTFiff~n 83 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRGTAATNGVNAMPTFIFFRN 83 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhchhhhcCcccCceEEEEec
Confidence 3567777664 458999999999999999999999999999966 9999999999999999999999999999999
Q ss_pred Ceee-eecCCCCHHHHHHHHHHhcCCC
Q 007882 177 GQHK-AYNGGRTKDAIVTWIKKKIGPG 202 (586)
Q Consensus 177 g~~~-~~~g~~~~~~l~~~i~~~~~~~ 202 (586)
|..+ ++.| .+...|++-+.++....
T Consensus 84 g~kid~~qG-Ad~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 84 GVKIDQIQG-ADASGLEEKVAKYASTS 109 (288)
T ss_pred CeEeeeecC-CCHHHHHHHHHHHhccC
Confidence 9554 5555 67889999998887543
No 100
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.54 E-value=4e-14 Score=115.65 Aligned_cols=94 Identities=27% Similarity=0.597 Sum_probs=78.6
Q ss_pred cchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCc
Q 007882 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 441 ~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~ 517 (586)
++|++. ..++.++|.||++||++|+.+.|.|+++++.+++. ..+.++.+|++... +..++|.++||+++|.+|..
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 577773 34679999999999999999999999999998653 35889999987644 47899999999999976643
Q ss_pred ccCccccccccCHHHHHHHHHhc
Q 007882 518 SFDPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 518 ~~~~~~~~g~~~~~~l~~~i~~~ 540 (586)
.++.|.++.+.|.+|+++.
T Consensus 85 ----~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 ----YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ----eeecCCCCHHHHHHHHHhh
Confidence 2688999999999999874
No 101
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.54 E-value=2.8e-14 Score=122.82 Aligned_cols=87 Identities=18% Similarity=0.424 Sum_probs=74.6
Q ss_pred CCCeEEEeCcchhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCc---
Q 007882 432 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDG--- 505 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~--- 505 (586)
...+..++.++|++.+.. .+++++|.||++||++|+.+.|.|+++++.+.+ .++.|+.+|++.+. +.+++|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 467888999999998754 357899999999999999999999999999864 35999999987765 46788877
Q ss_pred ---CcEEEEEeCCCccc
Q 007882 506 ---FPTILFFPAGNKSF 519 (586)
Q Consensus 506 ---~Pt~~~~~~g~~~~ 519 (586)
+||+++|++|+.+.
T Consensus 106 v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 106 SKQLPTIILFQGGKEVA 122 (152)
T ss_pred cCCCCEEEEEECCEEEE
Confidence 99999999998875
No 102
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.54 E-value=9.3e-14 Score=142.11 Aligned_cols=88 Identities=22% Similarity=0.395 Sum_probs=73.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEE----------------------------eCCCcHHHH
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKV----------------------------DATEENELA 160 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~v----------------------------d~~~~~~l~ 160 (586)
+++++||+|||+||++|+.++|.|.+++++++.. ++.++.| +++.+..++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 6899999999999999999999999999988742 3555444 334456788
Q ss_pred HHcCCCCCcEEEEEe-CC-eeeeecCCCCHHHHHHHHHHh
Q 007882 161 HEYDVQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 161 ~~~~i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~ 198 (586)
+.|+|+++||++++. +| ....+.|..+.+.|..+|+..
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999998884 88 456889999999999999844
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.54 E-value=9.7e-14 Score=110.96 Aligned_cols=90 Identities=39% Similarity=0.763 Sum_probs=81.0
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eee
Q 007882 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHK 180 (586)
Q Consensus 102 ~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~ 180 (586)
+|+..+..+++++|.||++||++|+.+.|.+.++++. .. ++.++.+|++....+++++++.++|+++++++| ...
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP---KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC---CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 5777787779999999999999999999999999887 22 699999999999999999999999999999999 567
Q ss_pred eecCCCCHHHHHHHH
Q 007882 181 AYNGGRTKDAIVTWI 195 (586)
Q Consensus 181 ~~~g~~~~~~l~~~i 195 (586)
.+.|..+.+.|.++|
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 888988888888876
No 104
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.53 E-value=7.6e-14 Score=120.12 Aligned_cols=98 Identities=22% Similarity=0.351 Sum_probs=78.8
Q ss_pred cchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc----ccccCCCCcCcEEEEEe-CC
Q 007882 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----EHHRAKSDGFPTILFFP-AG 515 (586)
Q Consensus 441 ~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~----~~~~~~i~~~Pt~~~~~-~g 515 (586)
.+|++.+ ..++++||+|||+||++|+.+.|.|.++++.+.+. +.|+.+|.+.+ .+..|+|.++||+++|. +|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~--~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ--VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC--eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 4666654 67889999999999999999999999999998763 44555554432 34789999999999994 78
Q ss_pred CcccCccccccccCHHHHHHHHHhcCCCC
Q 007882 516 NKSFDPINVDVDRTVVALYKFLKKNASIP 544 (586)
Q Consensus 516 ~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 544 (586)
+.+. ++.|..+.+.|.++|.+.+...
T Consensus 88 ~~v~---~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG---QSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE---EEeCCCCHHHHHHHHHHHHcCC
Confidence 7765 7789889999999999887643
No 105
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.53 E-value=4e-14 Score=142.94 Aligned_cols=105 Identities=30% Similarity=0.614 Sum_probs=89.0
Q ss_pred CCCeEEEeCcchhHHhh--ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc---c-ccCCCCc
Q 007882 432 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---H-HRAKSDG 505 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~---~-~~~~i~~ 505 (586)
+..|..|+.++|+..+. +.++++||.|||+||++|+.+.|.|+++++.+++. .+.|+.+|++.+. + ..++|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 34688999999999884 46789999999999999999999999999998763 4778888777543 2 5799999
Q ss_pred CcEEEEEeCCCcccCccccc-cccCHHHHHHHHHh
Q 007882 506 FPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKK 539 (586)
Q Consensus 506 ~Pt~~~~~~g~~~~~~~~~~-g~~~~~~l~~~i~~ 539 (586)
+||+++|++|.. .++.|. |.++.+.|..||+.
T Consensus 429 ~PTii~Fk~g~~--~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSS--RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCC--CceeCCCCCCCHHHHHHHHHh
Confidence 999999999965 456897 58999999999975
No 106
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.52 E-value=4.1e-14 Score=125.78 Aligned_cols=130 Identities=19% Similarity=0.298 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeC-cchhHHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC
Q 007882 407 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 483 (586)
Q Consensus 407 ~~fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~-~~f~~~v~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~ 483 (586)
+.|++.+...++....+..+ ....-+.+..++. .+|.+.+...+ .++||+||++||++|+.+.|.|.+++..+.
T Consensus 37 e~~l~~~R~~R~~el~~~~~-~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-- 113 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKLP-FGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-- 113 (175)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--
Confidence 45777776666654433211 1122567888998 99999986544 489999999999999999999999999875
Q ss_pred CcEEEEEEeCCccc-cccCCCCcCcEEEEEeCCCcccCccccc---c-ccCHHHHHHHHHhc
Q 007882 484 DSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 540 (586)
Q Consensus 484 ~~i~~~~id~~~~~-~~~~~i~~~Pt~~~~~~g~~~~~~~~~~---g-~~~~~~l~~~i~~~ 540 (586)
.+.|++||++.+. +..|+|.++||+++|++|+.+.+.+.+. | ..+.+.|..||.++
T Consensus 114 -~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 114 -AVKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred -CeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 4899999998753 4789999999999999998875322222 1 45778888888764
No 107
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.51 E-value=7.8e-14 Score=114.98 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=79.8
Q ss_pred CCeEEEeC-cchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEE
Q 007882 433 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTI 509 (586)
Q Consensus 433 ~~v~~l~~-~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~ 509 (586)
+.+..++. ++|.+.+ .++++++|+||++||++|+.+.|.++++++.+.+ +.|+++|.+.+. ..+++|.++||+
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCEE
Confidence 56777887 7899987 4568999999999999999999999999998754 788999988875 578999999999
Q ss_pred EEEeCCCcccCcccccc--------ccCHHHHHHHH
Q 007882 510 LFFPAGNKSFDPINVDV--------DRTVVALYKFL 537 (586)
Q Consensus 510 ~~~~~g~~~~~~~~~~g--------~~~~~~l~~~i 537 (586)
++|++|+.+. ++.| ..+.+.+.+||
T Consensus 80 l~fk~G~~v~---~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVD---RIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEE---EEECccccCCCCCCCHHHHHHHh
Confidence 9999998774 3332 34556666554
No 108
>PLN02309 5'-adenylylsulfate reductase
Probab=99.51 E-value=7.4e-14 Score=141.01 Aligned_cols=106 Identities=29% Similarity=0.609 Sum_probs=90.8
Q ss_pred CCCeEEEeCcchhHHhh--ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-ccc--cc-cCCCCc
Q 007882 432 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNE--HH-RAKSDG 505 (586)
Q Consensus 432 ~~~v~~l~~~~f~~~v~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~-~~~--~~-~~~i~~ 505 (586)
...|..++.++|++.+. +.++++||+||||||++|+.+.|.|.++++.+.+ ..+.|+.+|++ .+. +. .++|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCce
Confidence 45788999999999873 5678999999999999999999999999999876 36999999988 322 33 699999
Q ss_pred CcEEEEEeCCCcccCcccccc-ccCHHHHHHHHHhc
Q 007882 506 FPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKN 540 (586)
Q Consensus 506 ~Pt~~~~~~g~~~~~~~~~~g-~~~~~~l~~~i~~~ 540 (586)
+||+++|++|.. +++.|.| .++.+.|++||+..
T Consensus 423 ~PTil~f~~g~~--~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSS--RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCC--CeeecCCCCcCHHHHHHHHHHh
Confidence 999999998875 4678985 79999999999863
No 109
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.50 E-value=5.1e-13 Score=115.43 Aligned_cols=87 Identities=14% Similarity=0.295 Sum_probs=64.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC----------cHHHH-HHc---CCCCCcEEEEE
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------ENELA-HEY---DVQGFPTIYFF 174 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------~~~l~-~~~---~i~~~Pt~~~~ 174 (586)
.+++.+|+|||+||++|++++|.+.+++++++- .|..+.+|-.. ..... ..+ ++.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~---~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL---PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCC---cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 356779999999999999999999999988732 34444444221 12333 345 78999999999
Q ss_pred e-CC-ee-eeecCCCCHHHHHHHHHHh
Q 007882 175 V-DG-QH-KAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 175 ~-~g-~~-~~~~g~~~~~~l~~~i~~~ 198 (586)
+ +| .. ..+.|..+.+.+.+.|.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 6 65 33 4688999999998888765
No 110
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.49 E-value=1.1e-13 Score=112.63 Aligned_cols=98 Identities=49% Similarity=0.928 Sum_probs=82.2
Q ss_pred EEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeC
Q 007882 437 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPA 514 (586)
Q Consensus 437 ~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~ 514 (586)
.++.++|.+.+.+ +++++|+||++||++|+.+.|.|.++++.++....+.++.+|++.+. +..++|+++|++++|++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 4667789988744 45999999999999999999999999999863357999999998744 57899999999999988
Q ss_pred CCcccCccccccccCHHHHHHHH
Q 007882 515 GNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 515 g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
+.. ...+|.|..+.++|.+|+
T Consensus 81 ~~~--~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSK--EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCc--ccccCCCCcCHHHHHhhC
Confidence 732 345899999999998875
No 111
>PTZ00062 glutaredoxin; Provisional
Probab=99.49 E-value=3.8e-13 Score=121.25 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=88.0
Q ss_pred ChhhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007882 99 KERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 99 ~~~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (586)
+.+++++.++.+ ..++++|||+||++|+.+.|.+.++++++.. +.|+.||.+ |+|.++||+++|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc--------cCcccceEEEEEECC
Confidence 467788888754 6789999999999999999999999999855 999999976 999999999999999
Q ss_pred eeeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEE
Q 007882 178 QHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVL 224 (586)
Q Consensus 178 ~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i 224 (586)
+.+....+.+...|..++.+........ ...+-+.+++++++++++
T Consensus 73 ~~i~r~~G~~~~~~~~~~~~~~~~~~~~-~~~~~v~~li~~~~Vvvf 118 (204)
T PTZ00062 73 QLINSLEGCNTSTLVSFIRGWAQKGSSE-DTVEKIERLIRNHKILLF 118 (204)
T ss_pred EEEeeeeCCCHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCEEEE
Confidence 6554444456899999999988764422 122345566666554443
No 112
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.47 E-value=2.2e-13 Score=109.68 Aligned_cols=91 Identities=19% Similarity=0.399 Sum_probs=78.6
Q ss_pred hhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccC
Q 007882 443 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFD 520 (586)
Q Consensus 443 f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~ 520 (586)
++..+.+++++++|+||++||+.|+.+.|.++++++.+.+ .+.++.+|++.+. ..+++|.++|++++|++|+.+.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~- 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK- 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence 4556667889999999999999999999999999999865 5888899987654 4789999999999999988764
Q ss_pred ccccccccCHHHHHHHHH
Q 007882 521 PINVDVDRTVVALYKFLK 538 (586)
Q Consensus 521 ~~~~~g~~~~~~l~~~i~ 538 (586)
++.|..+.+.|.+||+
T Consensus 82 --~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 --EISGVKMKSEYREFIE 97 (97)
T ss_pred --EEeCCccHHHHHHhhC
Confidence 7889899999998874
No 113
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.46 E-value=1.1e-12 Score=118.52 Aligned_cols=88 Identities=24% Similarity=0.500 Sum_probs=74.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC----------------------cHHHHHHcCCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------------------ENELAHEYDVQ 166 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~ 166 (586)
.+++++|+||++||++|+...|.+.++++++.+. ++.++.|+++. +..+++.|++.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 5789999999999999999999999999999773 47788887653 35778999999
Q ss_pred CCcEEEEEe-CCee-eeecCCCCHHHHHHHHHHh
Q 007882 167 GFPTIYFFV-DGQH-KAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 167 ~~Pt~~~~~-~g~~-~~~~g~~~~~~l~~~i~~~ 198 (586)
++|+++++. +|+. ..+.|..+.+.+.+++.+.
T Consensus 138 ~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 138 PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999999996 7744 5789999999999988754
No 114
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.46 E-value=1.5e-13 Score=115.52 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=77.6
Q ss_pred CcchhHHhh-ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEE-EEeCC
Q 007882 440 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTIL-FFPAG 515 (586)
Q Consensus 440 ~~~f~~~v~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~-~~~~g 515 (586)
..+|++.+. ..++++||.|||+||++|+.+.|.|+++++++.+ .+.|+.+|++.+. +..|+|++.|+++ ||++|
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 468888885 3578999999999999999999999999999876 4777888888765 4789999776666 88999
Q ss_pred C-cccCcccccc--------ccCHHHHHHHHHhcC
Q 007882 516 N-KSFDPINVDV--------DRTVVALYKFLKKNA 541 (586)
Q Consensus 516 ~-~~~~~~~~~g--------~~~~~~l~~~i~~~~ 541 (586)
+ .+. +..| ..+.++|++-++...
T Consensus 89 ~~~vd---~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 89 HIMID---LGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred eEEEE---EecccccccccccCCHHHHHHHHHHHH
Confidence 8 554 5556 567788888777543
No 115
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=1.8e-13 Score=123.25 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=96.3
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcE
Q 007882 409 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 486 (586)
Q Consensus 409 fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i 486 (586)
|++.+...++....+... ...-+.+..++..+|...|...+ .+|||.||++||++|+.+.|.|.++|..+. .+
T Consensus 60 ~Le~yR~kRl~el~~~~~--~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~v 134 (192)
T cd02988 60 FLEEYRRKRLAEMKALAE--KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DT 134 (192)
T ss_pred HHHHHHHHHHHHHHHhhh--hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CC
Confidence 677776666654433211 12347899999999998886554 489999999999999999999999999975 38
Q ss_pred EEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccc---c-ccCHHHHHHHHHhc
Q 007882 487 VIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 540 (586)
Q Consensus 487 ~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~---g-~~~~~~l~~~i~~~ 540 (586)
.|+++|++.. .+.|++.++||+++|++|+.+.+.+.+. | ..+.+.|..+|.+.
T Consensus 135 kFvkI~ad~~-~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 135 KFVKIISTQC-IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEEhHHh-HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 8999998764 5789999999999999999875322222 2 45778888887654
No 116
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.46 E-value=4.3e-13 Score=109.82 Aligned_cols=77 Identities=21% Similarity=0.446 Sum_probs=67.2
Q ss_pred ChhhHHHHHhC--CCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------cHHHHHH
Q 007882 99 KERNFSDVIEN--NKFVMVEFYA-------PWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------ENELAHE 162 (586)
Q Consensus 99 ~~~~~~~~~~~--~~~~lv~f~a-------~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~l~~~ 162 (586)
+..+|.+.+.. +++++|.||| +||++|+.+.|.+++++.++++ ++.|+.||+++ +..+..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchhhHhc
Confidence 35677777765 7899999999 9999999999999999999875 58999999976 4589999
Q ss_pred cCCC-CCcEEEEEeCCe
Q 007882 163 YDVQ-GFPTIYFFVDGQ 178 (586)
Q Consensus 163 ~~i~-~~Pt~~~~~~g~ 178 (586)
++|. ++||+++|+.|.
T Consensus 85 ~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred cCcccCCCEEEEEcCCc
Confidence 9998 999999998774
No 117
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.46 E-value=2.2e-13 Score=111.35 Aligned_cols=92 Identities=22% Similarity=0.368 Sum_probs=75.4
Q ss_pred cchhHHhhccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCccc------cccCCCCcCcEEEE
Q 007882 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE------HHRAKSDGFPTILF 511 (586)
Q Consensus 441 ~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~i~~~~id~~~~~------~~~~~i~~~Pt~~~ 511 (586)
+.|.+.+ ..+++++|+||++||++|+.+.|.+ .++++.+.+ ++.++.+|.+.+. +.++++.++||+++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3566655 6689999999999999999999988 678888765 6999999987632 25799999999999
Q ss_pred Ee--CCCcccCccccccccCHHHHHHHHH
Q 007882 512 FP--AGNKSFDPINVDVDRTVVALYKFLK 538 (586)
Q Consensus 512 ~~--~g~~~~~~~~~~g~~~~~~l~~~i~ 538 (586)
|. +|+.. .++.|..+.++|.++|+
T Consensus 79 ~~~~~g~~~---~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEP---LRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCC---cccccccCHHHHHHHhC
Confidence 97 45554 48889999999998873
No 118
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.46 E-value=2.2e-13 Score=109.94 Aligned_cols=92 Identities=23% Similarity=0.434 Sum_probs=75.6
Q ss_pred CcchhHHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCC
Q 007882 440 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGN 516 (586)
Q Consensus 440 ~~~f~~~v~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~ 516 (586)
.++|++.+... ++.++|+||++||++|+.+.|.|+++++.+. ..+.++.+|.+.+. +.++++.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 35677877554 5899999999999999999999999999873 47999999988655 4789999999999999998
Q ss_pred cccCccccccccCHHHHHHHH
Q 007882 517 KSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 517 ~~~~~~~~~g~~~~~~l~~~i 537 (586)
.+. ++.| .+.+.|.+.|
T Consensus 80 ~~~---~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVD---RVSG-ADPKELAKKV 96 (97)
T ss_pred EEE---EEeC-CCHHHHHHhh
Confidence 764 5555 5677777665
No 119
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.45 E-value=3.3e-13 Score=112.52 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=74.7
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--cc---------cc---
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EH---------HR--- 500 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~--~~---------~~--- 500 (586)
+..++.++|.+.+ .+++.++|+|+++||++|+.+.|.|.++++..+ ..+.++++|.+.. .. ..
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 4567778888877 557889999999999999999999999999832 2465665554321 01 23
Q ss_pred -CCCCcCcEEEEEeCCCcccCcccccc-ccCHHHHHHHHH
Q 007882 501 -AKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLK 538 (586)
Q Consensus 501 -~~i~~~Pt~~~~~~g~~~~~~~~~~g-~~~~~~l~~~i~ 538 (586)
.++.++||+++|++|+.+. +..| ..+.++|.+|+.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~---~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVS---VRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEE---EEeCCCCCHHHHHHHhh
Confidence 3566799999999999985 6667 567999999874
No 120
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.45 E-value=7.6e-13 Score=119.21 Aligned_cols=86 Identities=19% Similarity=0.365 Sum_probs=73.2
Q ss_pred CCCeEEeChhhHHHHHh-C--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCC
Q 007882 92 DKDVVVLKERNFSDVIE-N--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGF 168 (586)
Q Consensus 92 ~~~v~~l~~~~~~~~~~-~--~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 168 (586)
-+.+..++..+|...+. . +.+|+|.||++||++|+.+.|.|.+++.++.. +.|+.||++. .+..|+|.++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad~---~~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIISTQ---CIPNYPDKNL 153 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhHH---hHhhCCCCCC
Confidence 36789999999997653 3 35899999999999999999999999999854 8999999864 3688999999
Q ss_pred cEEEEEeCCe-eeeecC
Q 007882 169 PTIYFFVDGQ-HKAYNG 184 (586)
Q Consensus 169 Pt~~~~~~g~-~~~~~g 184 (586)
||+++|++|. +.++.|
T Consensus 154 PTlliyk~G~~v~~ivG 170 (192)
T cd02988 154 PTILVYRNGDIVKQFIG 170 (192)
T ss_pred CEEEEEECCEEEEEEeC
Confidence 9999999994 446666
No 121
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.45 E-value=7.5e-14 Score=126.58 Aligned_cols=93 Identities=26% Similarity=0.583 Sum_probs=82.0
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCC-cEEEEEEeCCcccc--ccCCCCcCcEEEEEeCCCcccCccccc
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVD 525 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~-~i~~~~id~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~~~ 525 (586)
.+...|+|.||||||+||+++.|+|.++...++..+ .+.++++|+..-.. .+++|++|||+.+|+++..+ .|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~----dYR 116 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI----DYR 116 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee----ecC
Confidence 345679999999999999999999999999988754 79999999998664 78999999999999999876 799
Q ss_pred cccCHHHHHHHHHhcCCCCc
Q 007882 526 VDRTVVALYKFLKKNASIPF 545 (586)
Q Consensus 526 g~~~~~~l~~~i~~~~~~~~ 545 (586)
|.|+.+.|++|..+-+..-+
T Consensus 117 G~R~Kd~iieFAhR~a~aiI 136 (468)
T KOG4277|consen 117 GGREKDAIIEFAHRCAAAII 136 (468)
T ss_pred CCccHHHHHHHHHhccccee
Confidence 99999999999988775443
No 122
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.45 E-value=8.9e-13 Score=102.67 Aligned_cols=80 Identities=28% Similarity=0.455 Sum_probs=71.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHH
Q 007882 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIV 192 (586)
Q Consensus 113 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~ 192 (586)
.+..||++||++|+...|.+.++++.++. .+.+..||+++++++++++++.++||+++ +|. ..+.|..+.+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHHHHH
Confidence 46789999999999999999999998865 69999999999999999999999999986 775 4788999999999
Q ss_pred HHHHHh
Q 007882 193 TWIKKK 198 (586)
Q Consensus 193 ~~i~~~ 198 (586)
+++.+.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 998765
No 123
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.45 E-value=6.1e-13 Score=108.67 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=77.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCC--CCcEEEEEeC--CeeeeecC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ--GFPTIYFFVD--GQHKAYNG 184 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~--g~~~~~~g 184 (586)
.++++++.||++||++|+.+.|.+.++++++++ ++.|+.||+++.+.+++.+++. ++|+++++++ |....+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~ 87 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPE 87 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCc
Confidence 368999999999999999999999999999987 7999999999999999999999 9999999987 65554554
Q ss_pred C-CCHHHHHHHHHHh
Q 007882 185 G-RTKDAIVTWIKKK 198 (586)
Q Consensus 185 ~-~~~~~l~~~i~~~ 198 (586)
. .+.+.|.+|+...
T Consensus 88 ~~~~~~~l~~fi~~~ 102 (103)
T cd02982 88 EELTAESLEEFVEDF 102 (103)
T ss_pred cccCHHHHHHHHHhh
Confidence 4 5899999999865
No 124
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.44 E-value=2.8e-13 Score=108.11 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=65.1
Q ss_pred cchhHHhhcc-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCc
Q 007882 441 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 441 ~~f~~~v~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~ 517 (586)
+.|++.+.+. ++++||.|+|+||++|+.+.|.|++++..+++ .+.|+.+|.+... +..|+|++.||++||++|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 4567777544 78999999999999999999999999999865 3888888888765 47899999999999999876
Q ss_pred c
Q 007882 518 S 518 (586)
Q Consensus 518 ~ 518 (586)
.
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 4
No 125
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4e-13 Score=119.17 Aligned_cols=104 Identities=26% Similarity=0.437 Sum_probs=85.6
Q ss_pred eEEEe-CcchhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEE
Q 007882 435 VKIVV-GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTIL 510 (586)
Q Consensus 435 v~~l~-~~~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~ 510 (586)
|..++ ...|+..+.. ..+.++|.|+|.||++|+++.|.|..++.+|.+ .+|+++|++... +..++|.++|||+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence 34444 3478887743 347999999999999999999999999999965 889999988754 4689999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHHHhcCCCCc
Q 007882 511 FFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 545 (586)
Q Consensus 511 ~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 545 (586)
+|.+|.++. .+.| .+...|.+.+.++++..-
T Consensus 80 ff~ng~kid---~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 80 FFRNGVKID---QIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred EEecCeEee---eecC-CCHHHHHHHHHHHhccCc
Confidence 999999986 6766 678888888888876554
No 126
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.43 E-value=8.4e-13 Score=112.54 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=62.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcC-----CCceEEEEEeCCCcH-------------------------H
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSA-----NESVVLAKVDATEEN-------------------------E 158 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-----~~~v~~~~vd~~~~~-------------------------~ 158 (586)
++++++|+|||+||+||++++|.|.++++++++. ..++.++.|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5899999999999999999999999999887652 235888888876431 4
Q ss_pred HHHHcCCCCCcEEEEEe-CCeeeeecC
Q 007882 159 LAHEYDVQGFPTIYFFV-DGQHKAYNG 184 (586)
Q Consensus 159 l~~~~~i~~~Pt~~~~~-~g~~~~~~g 184 (586)
++++|++.++||+++++ +|++....|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence 67788999999999996 887665544
No 127
>PTZ00051 thioredoxin; Provisional
Probab=99.39 E-value=1.3e-12 Score=105.63 Aligned_cols=92 Identities=25% Similarity=0.475 Sum_probs=72.9
Q ss_pred eEEEeC-cchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007882 435 VKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 511 (586)
Q Consensus 435 v~~l~~-~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~ 511 (586)
+..++. ++|.+.+ +.+++++|+||++||++|+.+.|.|.++++.+.+ +.++.+|++.+. +.++++.++||+++
T Consensus 2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK---MVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC---cEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 344554 4666654 6788999999999999999999999999997643 788899988654 47899999999999
Q ss_pred EeCCCcccCccccccccCHHHHH
Q 007882 512 FPAGNKSFDPINVDVDRTVVALY 534 (586)
Q Consensus 512 ~~~g~~~~~~~~~~g~~~~~~l~ 534 (586)
|++|+.+. ++.|. ..++|.
T Consensus 78 ~~~g~~~~---~~~G~-~~~~~~ 96 (98)
T PTZ00051 78 FKNGSVVD---TLLGA-NDEALK 96 (98)
T ss_pred EeCCeEEE---EEeCC-CHHHhh
Confidence 99998875 66673 445543
No 128
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.39 E-value=9.6e-13 Score=108.57 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=75.6
Q ss_pred hhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccC
Q 007882 443 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFD 520 (586)
Q Consensus 443 f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~ 520 (586)
|.+.+ .++..++|+||++||++|+.+.|.+++++..+ + .+.+..+|.+.+. ...|+|.++||+++|++|... .
T Consensus 15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~ 89 (113)
T cd02975 15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-G 89 (113)
T ss_pred HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-c
Confidence 44444 44667999999999999999999999999875 3 4777777776654 478999999999999988665 4
Q ss_pred ccccccccCHHHHHHHHHhcC
Q 007882 521 PINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 521 ~~~~~g~~~~~~l~~~i~~~~ 541 (586)
.+++.|..+..++.+||..-+
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred eEEEEecCchHHHHHHHHHHH
Confidence 457889888899999987643
No 129
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.38 E-value=5.5e-12 Score=110.59 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=66.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-------------HHHHHHcCC--CCCcEEEEEe-CC
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-------------NELAHEYDV--QGFPTIYFFV-DG 177 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~Pt~~~~~-~g 177 (586)
+|+||++||++|++++|.+.+++++++ +.++.|+.+.. ..+...|++ .++|++++++ +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 888999999999999999999999872 55555554422 236678884 6999999995 88
Q ss_pred ee--eeecCCCCHHHHHHHHHHhcCC
Q 007882 178 QH--KAYNGGRTKDAIVTWIKKKIGP 201 (586)
Q Consensus 178 ~~--~~~~g~~~~~~l~~~i~~~~~~ 201 (586)
+. ..+.|..+.+.|.+.|...+..
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 54 3699999999999988887754
No 130
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.38 E-value=1.4e-12 Score=106.54 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=95.3
Q ss_pred eeecCCCcccccccCCcccEEEEEEeccchhhHHHHHHHHHHh---ccCceEEEEEECCCcccccccccccCccCCCCce
Q 007882 307 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 383 (586)
Q Consensus 307 v~~lt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lA~~---~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~ 383 (586)
|+++|.++...++..+.+.++++| ..++...+...++++|++ +++++.|+++|.+... ..+++||++..+.|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence 568899999999999999998888 667788899999999999 9999999999988743 478999999888999
Q ss_pred EEEecCCCCCccc-CCCCCCHHHHHHHHHHHhcCC
Q 007882 384 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK 417 (586)
Q Consensus 384 ~~i~~~~~~~~y~-~~~~~t~e~i~~fi~~~~~gk 417 (586)
+++.+.....+|. +.++++.++|.+|++++++|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 9999887667888 778999999999999999996
No 131
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.37 E-value=8.6e-13 Score=120.32 Aligned_cols=104 Identities=26% Similarity=0.499 Sum_probs=89.9
Q ss_pred eCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CCcEEEEEEeCCccc--cccCCCCcCcEEEEEe
Q 007882 439 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG---VDSIVIAKMDGTTNE--HHRAKSDGFPTILFFP 513 (586)
Q Consensus 439 ~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~ 513 (586)
+..|++..+ +.+..++|.|||+||+.++.++|+|++.|+.++. ..++++++|||+.++ +.+|.|..|||+.+|.
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 345667655 6688999999999999999999999999988764 258999999999876 4899999999999999
Q ss_pred CCCcccCccccccccCHHHHHHHHHhcCCCCc
Q 007882 514 AGNKSFDPINVDVDRTVVALYKFLKKNASIPF 545 (586)
Q Consensus 514 ~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 545 (586)
+|.... ..|.|.|+++.|.+||++..+.++
T Consensus 81 nG~~~~--rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 81 NGEMMK--REYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred ccchhh--hhhccchhHHHHHHHHHHHhccHH
Confidence 998753 379999999999999999887664
No 132
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.35 E-value=1.6e-12 Score=107.68 Aligned_cols=97 Identities=22% Similarity=0.440 Sum_probs=67.4
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCC--CcEEEEEe-C
Q 007882 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG--FPTIYFFV-D 176 (586)
Q Consensus 100 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~~~~-~ 176 (586)
.+.+..+..++++++|.|||+||++|+.+.|.+.+....... ..++..+.+|.+.. .....|++.+ +||++++. +
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCC-chhhhcccCCCccceEEEECCC
Confidence 344556667889999999999999999999999998775443 22344444443322 4557888876 99999996 8
Q ss_pred Cee----eeecCCCCHHHHHHHHHHh
Q 007882 177 GQH----KAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 177 g~~----~~~~g~~~~~~l~~~i~~~ 198 (586)
|+. ....|..+...+.+.+...
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHH
Confidence 833 3455666666555555443
No 133
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.35 E-value=1.3e-11 Score=109.03 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEE------EEEeCCCc--------------------------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVL------AKVDATEE-------------------------- 156 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~------~~vd~~~~-------------------------- 156 (586)
.||+++|+|||+||++|+.++|.+.++..+ ++.+ ..||.++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 599999999999999999999999999543 2444 55665542
Q ss_pred ---HHHHHHcCCCCCcEE-EEEe-CC-eeeeecCCCCHHHHHHHH
Q 007882 157 ---NELAHEYDVQGFPTI-YFFV-DG-QHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 157 ---~~l~~~~~i~~~Pt~-~~~~-~g-~~~~~~g~~~~~~l~~~i 195 (586)
..+...|++.++|++ ++++ +| ....+.|..+.+.+.+.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 245667899999988 6775 88 557899999988887643
No 134
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.35 E-value=5.7e-12 Score=107.84 Aligned_cols=74 Identities=23% Similarity=0.503 Sum_probs=60.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc------------------------HHHHHHcC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE------------------------NELAHEYD 164 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 164 (586)
+++++||+||++||++|+.++|.+.++++++.+.+.++.++.|+.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 578999999999999999999999999999876534566666666533 35778899
Q ss_pred CCCCcEEEEEe-CCeeeee
Q 007882 165 VQGFPTIYFFV-DGQHKAY 182 (586)
Q Consensus 165 i~~~Pt~~~~~-~g~~~~~ 182 (586)
|.++|++++++ +|++...
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999997 7865543
No 135
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.32 E-value=2.6e-11 Score=108.85 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=68.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC-----------------------CcHHHHHHcC
Q 007882 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----------------------EENELAHEYD 164 (586)
Q Consensus 108 ~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~ 164 (586)
.++++++|+||++||++|+.+.|.+.+++++ ++.++.|+.+ .+..+.+.|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 3589999999999999999999999888653 3555555532 2335667889
Q ss_pred CCCCcEEEEEe-CC-eeeeecCCCCHHHHHHHHHHhc
Q 007882 165 VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 165 i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
+.++|++++++ +| ....+.|..+.+.+.++++.++
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 99999888885 88 4567889999999999998876
No 136
>PTZ00062 glutaredoxin; Provisional
Probab=99.32 E-value=6.2e-12 Score=113.39 Aligned_cols=92 Identities=9% Similarity=0.130 Sum_probs=78.2
Q ss_pred eCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcc
Q 007882 439 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 439 ~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~ 518 (586)
+.++|.+.+..+...++++|||+||++|+.+.|.+.++++.+.. +.|+.||.+ ++|.++|||++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc------cCcccceEEEEEECCEEE
Confidence 34567777644447899999999999999999999999998854 999999977 999999999999999998
Q ss_pred cCccccccccCHHHHHHHHHhcCCC
Q 007882 519 FDPINVDVDRTVVALYKFLKKNASI 543 (586)
Q Consensus 519 ~~~~~~~g~~~~~~l~~~i~~~~~~ 543 (586)
. ++.| .++..|..++.++...
T Consensus 76 ~---r~~G-~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 76 N---SLEG-CNTSTLVSFIRGWAQK 96 (204)
T ss_pred e---eeeC-CCHHHHHHHHHHHcCC
Confidence 6 7777 4688888888887764
No 137
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.31 E-value=1.5e-11 Score=98.68 Aligned_cols=68 Identities=29% Similarity=0.626 Sum_probs=56.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-------------------------HHHHHcC
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------------------------ELAHEYD 164 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~~ 164 (586)
|++++|+|||+||++|+++.|.+.++.+++++ +.++.++.|++++.. .+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999994 457999999887542 5778899
Q ss_pred CCCCcEEEEEe-CCe
Q 007882 165 VQGFPTIYFFV-DGQ 178 (586)
Q Consensus 165 i~~~Pt~~~~~-~g~ 178 (586)
|.++|++++++ +|+
T Consensus 80 i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 80 INGIPTLVLLDPDGK 94 (95)
T ss_dssp -TSSSEEEEEETTSB
T ss_pred CCcCCEEEEECCCCC
Confidence 99999999997 664
No 138
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.30 E-value=1.6e-09 Score=114.31 Aligned_cols=305 Identities=16% Similarity=0.202 Sum_probs=202.9
Q ss_pred chhHHHHhcccCCeEEEEEecCCCCc---chHHHHHhc-cc---cCceeEEec---CChhHHHhcCCCCCCCCCeeEEec
Q 007882 208 TLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RL---EDDVNFYQT---TNPDVAKIFHLDSKVNRPALVMVK 277 (586)
Q Consensus 208 ~~~~l~~~~~~~~~~~i~~~~~~~~~---~~~~f~~~~-~~---~~~~~F~~~---~~~~~~~~~~~~~~~~~p~l~~~~ 277 (586)
+.+.++.++.+.+.++|.|+..++.. ....+..++ .+ ...+.|+.+ .+.++++++++.. .|++++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~---~Pt~~~~~ 83 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG---YPTLKIFR 83 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc---ccEEEEEe
Confidence 34678888888887888887776643 234455444 22 234777764 4567999999985 89999998
Q ss_pred cCCcceecccCCCChhHHHHHHHhcCCCceeecC-CCcccccccCCcccEEEEEEeccchhhHHHHHHHHHHhccCceEE
Q 007882 278 KETEKISYFDGKFDKSTIADFVFSNKLPLVTIFT-RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIF 356 (586)
Q Consensus 278 ~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lA~~~~~~~~f 356 (586)
........|.|..+...|.+|+.....|.+..++ .+.+..+.... ...+++|....+ ......+.++|..+.+...|
T Consensus 84 ~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~vi~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 84 NGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADD-DVVVIGFFKDLD-SELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred CCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcC-CcEEEEEECCCC-cHHHHHHHHHHHHhhhccce
Confidence 6553257889999999999999999988888886 55566665553 344444444322 35667899999999887664
Q ss_pred EEEECCCcccccccccccCccCCCCceEEEecCCCCCc-ccCCCC--CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 007882 357 VYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK-HILDGE--LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG 433 (586)
Q Consensus 357 ~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~-y~~~~~--~t~e~i~~fi~~~~~gkl~~~~ks~~~~~~~~~ 433 (586)
.....+. .+...++... .+++++........ +.+.++ .+.+.|.+|+....- +
T Consensus 162 ~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~-----------------p 217 (462)
T TIGR01130 162 FAHSSDV-----AAFAKLGAFP--DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESL-----------------P 217 (462)
T ss_pred EEecCCH-----HHHhhcCCCC--CcEEEecccccccccccccCcccCCHHHHHHHHHHcCC-----------------C
Confidence 3222111 2334555432 23333332222221 344554 456899999987432 3
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEe--CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCC--cCc
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIY--APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSD--GFP 507 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~--~~~~~~i~--~~P 507 (586)
.+..++..++...... + +.++.|+ ......|+.+...++++++.+++ ..+.|+.+|+... .+..+++. .+|
T Consensus 218 ~v~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~~~~~~~P 294 (462)
T TIGR01130 218 LVGEFTQETAAKYFES-G-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFGLKAEKFP 294 (462)
T ss_pred ceEeeCCcchhhHhCC-C-CceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcCCCccCCc
Confidence 5777888888887633 3 4444443 44666789999999999999875 4688888888643 34667776 799
Q ss_pred EEEEEeCCCcccCcccccc-ccCHHHHHHHHHhcCCCCcc
Q 007882 508 TILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNASIPFK 546 (586)
Q Consensus 508 t~~~~~~g~~~~~~~~~~g-~~~~~~l~~~i~~~~~~~~~ 546 (586)
+++++..... ....+.+ ..+.+.|.+|+++...-+.+
T Consensus 295 ~~vi~~~~~~--~~y~~~~~~~~~~~i~~fi~~~~~g~~~ 332 (462)
T TIGR01130 295 AVAIQDLEGN--KKYPMDQEEFSSENLEAFVKDFLDGKLK 332 (462)
T ss_pred eEEEEeCCcc--cccCCCcCCCCHHHHHHHHHHHhcCCCC
Confidence 9999965431 1224544 78999999999998765554
No 139
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.30 E-value=1.4e-11 Score=105.42 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=60.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-------------------------HHHHHHc
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-------------------------NELAHEY 163 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~ 163 (586)
+|++++|+||++||++|+.++|.+.++++++++.+.++.++.|+++.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 589999999999999999999999999999876433577777766543 2456679
Q ss_pred CCCCCcEEEEEe-CCeeeeecC
Q 007882 164 DVQGFPTIYFFV-DGQHKAYNG 184 (586)
Q Consensus 164 ~i~~~Pt~~~~~-~g~~~~~~g 184 (586)
+|.++|++++++ +|++....|
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 999999999996 776654444
No 140
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.28 E-value=1.7e-11 Score=97.83 Aligned_cols=89 Identities=30% Similarity=0.587 Sum_probs=74.6
Q ss_pred chhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCccc
Q 007882 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSF 519 (586)
Q Consensus 442 ~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~ 519 (586)
+|...+.. +++++|+||++||++|+.+.+.++++++. . ..+.++.+|++.+. +..+++.++|++++|.+|+.+.
T Consensus 2 ~~~~~~~~-~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKS-AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 56666643 48999999999999999999999999988 2 36888888888644 4789999999999999998654
Q ss_pred CccccccccCHHHHHHHH
Q 007882 520 DPINVDVDRTVVALYKFL 537 (586)
Q Consensus 520 ~~~~~~g~~~~~~l~~~i 537 (586)
.+.|..+.+.|.+||
T Consensus 78 ---~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 ---RVVGADPKEELEEFL 92 (93)
T ss_pred ---EEecCCCHHHHHHHh
Confidence 677888889998887
No 141
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.26 E-value=3.9e-11 Score=102.07 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=62.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEe-----------------------CCCcHHHHHHcCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-----------------------ATEENELAHEYDV 165 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i 165 (586)
++++++|+||++||++|+.+.|.+.++++.+ ++.++.|+ ++....+++.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 5889999999999999999999999998764 25555555 3345578889999
Q ss_pred CCCcEEEEEe-CCe-eeeecCCCCHHHH
Q 007882 166 QGFPTIYFFV-DGQ-HKAYNGGRTKDAI 191 (586)
Q Consensus 166 ~~~Pt~~~~~-~g~-~~~~~g~~~~~~l 191 (586)
.++|+++++. +|+ ...+.|..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999888885 884 5688898887654
No 142
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.26 E-value=2e-11 Score=100.09 Aligned_cols=92 Identities=20% Similarity=0.317 Sum_probs=68.4
Q ss_pred CcchhHHhhcc-CCcEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--------c-cccCC
Q 007882 440 GNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--------E-HHRAK 502 (586)
Q Consensus 440 ~~~f~~~v~~~-~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~--------~-~~~~~ 502 (586)
.++|.+.+... +++++|.||| +||++|+.+.|.+++++..+.+ ++.|+.||++.. + ...++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccC
Confidence 35677777543 5899999999 9999999999999999999874 477888888652 1 25788
Q ss_pred CC-cCcEEEEEeCCCcccCccccccccCHHHHHHHH
Q 007882 503 SD-GFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 503 i~-~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
|. ++||+++|+.|+++. -..=.+.+.+..|+
T Consensus 87 I~~~iPT~~~~~~~~~l~----~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRLV----EDECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCceec----chhhcCHHHHHHhh
Confidence 98 999999998776542 11123555555554
No 143
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.25 E-value=2e-11 Score=103.47 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=72.2
Q ss_pred hhHHhhccC-CcEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCCcEEEEEEeCCcc---------------ccccCCC
Q 007882 443 FDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTN---------------EHHRAKS 503 (586)
Q Consensus 443 f~~~v~~~~-~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~i~~~~id~~~~---------------~~~~~~i 503 (586)
+.+. .+.+ ++++|.||++||++|+.+.|.+. .+.+.+.+ .+.++.+|.+.+ ....++|
T Consensus 6 ~~~a-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 6 LAEA-AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHH-HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 3443 3566 89999999999999999999885 55555553 577888887653 2367899
Q ss_pred CcCcEEEEEeCC--CcccCccccccccCHHHHHHHHHhcCC
Q 007882 504 DGFPTILFFPAG--NKSFDPINVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 504 ~~~Pt~~~~~~g--~~~~~~~~~~g~~~~~~l~~~i~~~~~ 542 (586)
.++||+++|.++ +.+. ++.|..+.+.+.++|+....
T Consensus 83 ~~~Pt~~~~~~~gg~~~~---~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIA---RLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccccEEEEEcCCCCceeE---EecCCCCHHHHHHHHHHHHh
Confidence 999999999764 5543 78888888889888887554
No 144
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.25 E-value=4.4e-11 Score=90.75 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=59.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCC-CCHHHHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG-RTKDAIV 192 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~-~~~~~l~ 192 (586)
-|.||++||++|+.+.|.+.++++++.. .+.++.|| +...+.+|++.++||+++ +|+.. +.|. .+.+.+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHH
Confidence 3789999999999999999999998865 68888887 344578899999999998 88655 7775 4557777
Q ss_pred HHH
Q 007882 193 TWI 195 (586)
Q Consensus 193 ~~i 195 (586)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 665
No 145
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.24 E-value=1.4e-11 Score=102.02 Aligned_cols=91 Identities=24% Similarity=0.495 Sum_probs=65.5
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-cccCCCCc--CcEEEEE-eCCCcccCccc
Q 007882 448 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDG--FPTILFF-PAGNKSFDPIN 523 (586)
Q Consensus 448 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-~~~~~i~~--~Pt~~~~-~~g~~~~~~~~ 523 (586)
...+++++|.|||+||++|+.+.|.+.+.........+++.+++|.+... ...+++.+ +||+++| ++|+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 45688999999999999999999999998775543345777777765433 35778875 9999999 47887643445
Q ss_pred cccccCHHHHHHHHH
Q 007882 524 VDVDRTVVALYKFLK 538 (586)
Q Consensus 524 ~~g~~~~~~l~~~i~ 538 (586)
..|..+......+|.
T Consensus 96 ~~~~~~~~~f~~~~~ 110 (117)
T cd02959 96 KKGNPNYKYFYSSAA 110 (117)
T ss_pred CCCCccccccCCCHH
Confidence 556555544444443
No 146
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.23 E-value=7.7e-11 Score=97.85 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=63.3
Q ss_pred ChhhHHHHHhCCCeEEEEEECCCChhhhhhhHH-HH--HHHHHhhcCCCceEEEEEeCCCcHHHHHH--------cCCCC
Q 007882 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPE-YA--AAATELKSANESVVLAKVDATEENELAHE--------YDVQG 167 (586)
Q Consensus 99 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~-~~--~~~~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~ 167 (586)
+++.+..+.+++|+++|.|+|+||++|+.+.+. |. ++++.+.. ++.++.||.++.+++++. |++.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 466788888999999999999999999999773 32 45555554 699999999888777653 58999
Q ss_pred CcEEEEEe-CCeee
Q 007882 168 FPTIYFFV-DGQHK 180 (586)
Q Consensus 168 ~Pt~~~~~-~g~~~ 180 (586)
+||++|+. +|+..
T Consensus 81 ~Pt~vfl~~~G~~~ 94 (124)
T cd02955 81 WPLNVFLTPDLKPF 94 (124)
T ss_pred CCEEEEECCCCCEE
Confidence 99999996 77443
No 147
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.22 E-value=9.5e-11 Score=111.92 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=70.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---------cHHHHHHcCCCCCcEEEEEeC-C-
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------ENELAHEYDVQGFPTIYFFVD-G- 177 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~Pt~~~~~~-g- 177 (586)
.++++||+||++||++|+.++|.+.++++++.- .|..+.+|... +..+++++||.++||+++++. |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~---~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI---EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc---EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 378999999999999999999999999998732 34444444321 357899999999999999985 5
Q ss_pred ee-eeecCCCCHHHHHHHHHHhcC
Q 007882 178 QH-KAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 178 ~~-~~~~g~~~~~~l~~~i~~~~~ 200 (586)
.+ ....|..+.+.|.+.+.....
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHhc
Confidence 43 346688999999988877654
No 148
>PHA02125 thioredoxin-like protein
Probab=99.19 E-value=1.6e-10 Score=87.68 Aligned_cols=68 Identities=24% Similarity=0.487 Sum_probs=54.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCe-eeeecCC-CCHHHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQ-HKAYNGG-RTKDAI 191 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~g~-~~~~~l 191 (586)
+++||++||++|+.+.|.|.++. +.++.||+++..+++++|+|.++||++ +|+ ..++.|. .+...|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987542 568899999999999999999999987 674 3567774 233444
Q ss_pred HH
Q 007882 192 VT 193 (586)
Q Consensus 192 ~~ 193 (586)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 43
No 149
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.18 E-value=9.1e-11 Score=97.38 Aligned_cols=84 Identities=31% Similarity=0.538 Sum_probs=62.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHH---HhhcCCCceEEEEEeCCCc--------------------HHHHHHcCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAAT---ELKSANESVVLAKVDATEE--------------------NELAHEYDV 165 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~---~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i 165 (586)
+++++++.||++||++|+.+.+.+....+ .+++ ++.++.++++.. .++.+.++|
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 57899999999999999999999886443 3433 577777777653 358889999
Q ss_pred CCCcEEEEEe-CCe-eeeecCCCCHHHHHHHH
Q 007882 166 QGFPTIYFFV-DGQ-HKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 166 ~~~Pt~~~~~-~g~-~~~~~g~~~~~~l~~~i 195 (586)
+++||+++++ +|+ +..+.|..+.+.|.+++
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999996 784 56789999999998764
No 150
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.17 E-value=1.4e-10 Score=94.71 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=72.0
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCC--cCcEEEEEeC--CCcccCcccc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSD--GFPTILFFPA--GNKSFDPINV 524 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~--~~Pt~~~~~~--g~~~~~~~~~ 524 (586)
++++++.|+++||++|+.+.|.++++++++++ ++.|+.+|++.+. +..+++. ++|++++++. |++.. ..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~---~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL---MP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccC---CC
Confidence 68999999999999999999999999999986 6999999998754 5789999 9999999988 55541 23
Q ss_pred ccccCHHHHHHHHHhc
Q 007882 525 DVDRTVVALYKFLKKN 540 (586)
Q Consensus 525 ~g~~~~~~l~~~i~~~ 540 (586)
.|..+.+.|.+|+.+.
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 3445999999999864
No 151
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.17 E-value=1.9e-10 Score=97.34 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=69.4
Q ss_pred EeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeC---------------------CC
Q 007882 97 VLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA---------------------TE 155 (586)
Q Consensus 97 ~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~---------------------~~ 155 (586)
.++++.+......+++++|+||++||++|+.+.|.+.++++.+ .+..+.+|- +.
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY-----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC-----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 3444455554556789999999999999999999999998763 233333321 34
Q ss_pred cHHHHHHcCCCCCcEEEEEe-CCeeeeecCCCCHHHHHH
Q 007882 156 ENELAHEYDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVT 193 (586)
Q Consensus 156 ~~~l~~~~~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~ 193 (586)
+..+++.|+|.++|+++++. +|....+.|..+.+.|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 45799999999999999997 455567889898888865
No 152
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.17 E-value=1.4e-10 Score=122.99 Aligned_cols=97 Identities=27% Similarity=0.486 Sum_probs=79.3
Q ss_pred ChhhHHHHH----hCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCCceEEEEEeCCCc----HHHHHHcCCCC
Q 007882 99 KERNFSDVI----ENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATEE----NELAHEYDVQG 167 (586)
Q Consensus 99 ~~~~~~~~~----~~~~~~lv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~ 167 (586)
+.+++++.+ .++++++|+|||+||++|+.+.+.. .++.+.++ ++.++.+|++++ .+++++|++.+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLKHYNVLG 534 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHHHcCCCC
Confidence 356677665 3478999999999999999998864 56666664 388999999753 68899999999
Q ss_pred CcEEEEEe-CCee---eeecCCCCHHHHHHHHHHhc
Q 007882 168 FPTIYFFV-DGQH---KAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 168 ~Pt~~~~~-~g~~---~~~~g~~~~~~l~~~i~~~~ 199 (586)
+||+++|+ +|+. .++.|..+.+.+.+++++..
T Consensus 535 ~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 535 LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99999997 7844 57889999999999998753
No 153
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.15 E-value=2.5e-10 Score=104.22 Aligned_cols=91 Identities=10% Similarity=0.177 Sum_probs=68.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------c----HHHHHHcCC------------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELAHEYDV------------ 165 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~~~i------------ 165 (586)
+|+++||+|||+||++|+.++|.|.++++++++ .++.++.|+|++ . ...++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~--~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g 115 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP--LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNG 115 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc--CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccC
Confidence 589999999999999999999999999999987 348888998741 1 234444442
Q ss_pred ------------------------CCCc---EEEEE-eCC-eeeeecCCCCHHHHHHHHHHhcCC
Q 007882 166 ------------------------QGFP---TIYFF-VDG-QHKAYNGGRTKDAIVTWIKKKIGP 201 (586)
Q Consensus 166 ------------------------~~~P---t~~~~-~~g-~~~~~~g~~~~~~l~~~i~~~~~~ 201 (586)
..+| +++++ ++| ...++.|..+.+.+.+.|.+.+..
T Consensus 116 ~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 116 ENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred CccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1122 57777 488 456778888888899888877644
No 154
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.13 E-value=4.8e-10 Score=103.83 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=75.8
Q ss_pred eEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------c----HHHH-HH
Q 007882 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELA-HE 162 (586)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~ 162 (586)
+..++++.+...--+|+++||+||++||++|+.++|.|.++++++++. ++.++.|+|+. . ..++ ++
T Consensus 84 l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~ 161 (236)
T PLN02399 84 VKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTR 161 (236)
T ss_pred EECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 344455444322235799999999999999999999999999999873 48888888741 1 1222 22
Q ss_pred cC----------------------------------CCCCcEEEEEe-CC-eeeeecCCCCHHHHHHHHHHhcC
Q 007882 163 YD----------------------------------VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 163 ~~----------------------------------i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
++ |+..|++++++ +| .+.+|.|..+.+.|...|++.+.
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 21 12358999995 88 55789999999999999988763
No 155
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=8.1e-11 Score=117.39 Aligned_cols=113 Identities=27% Similarity=0.532 Sum_probs=90.5
Q ss_pred CCCCCeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCC-cEEEEEEeCCccc----cccCCCC
Q 007882 430 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNE----HHRAKSD 504 (586)
Q Consensus 430 ~~~~~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~-~i~~~~id~~~~~----~~~~~i~ 504 (586)
..+++|..|+.++|+..+..+.+-.+|.||++|||+|+++.|.|+++++.+.... -+.++.|||.... |.+++|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 3458899999999999998888899999999999999999999999999987653 5778899987644 5899999
Q ss_pred cCcEEEEEeCCCcc-cCccccccccCHHHHHHHHHhcCC
Q 007882 505 GFPTILFFPAGNKS-FDPINVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 505 ~~Pt~~~~~~g~~~-~~~~~~~g~~~~~~l~~~i~~~~~ 542 (586)
.+|++.+|+.+... .....+.|.....++.+++.+.+.
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999999766332 112244555667777777776553
No 156
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.11 E-value=2.2e-10 Score=89.11 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=64.6
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHH
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 531 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~ 531 (586)
.+..||++||++|+.+.|.++++++.+.. .+.++.+|.+.+. ..+++++++||+++ +|+. ++.|..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~-----~~~G~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV-----EFIGAPTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE-----EEecCCCHH
Confidence 46789999999999999999999998865 4778888876554 47899999999986 5542 678988999
Q ss_pred HHHHHHHhc
Q 007882 532 ALYKFLKKN 540 (586)
Q Consensus 532 ~l~~~i~~~ 540 (586)
+|.++|.+.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999998764
No 157
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.11 E-value=7.3e-10 Score=93.27 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=88.8
Q ss_pred CceeecCCCcccc-cccCCcccEEEEEEec------cchhhHHHHHHHHHHhccCc-eEEEEEECCCcccccccccccCc
Q 007882 305 PLVTIFTRENAPS-VFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGI 376 (586)
Q Consensus 305 p~v~~lt~~~~~~-~~~~~~~~~l~~~~~~------~~~~~~~~~l~~lA~~~~~~-~~f~~vd~~~~~~~~~~~~~~gi 376 (586)
|-+.+++.++... .+.. ...+++.|... +....+...++++|++|+++ +.|+|+|.+.. ..+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCC
Confidence 4456676655533 4433 35677777654 23567899999999999999 99999998873 358899999
Q ss_pred cCCCCceEEEecCCCCCccc-CCCCCCHHHHHHHHHHHhcCCCCCCC
Q 007882 377 TGEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKPFF 422 (586)
Q Consensus 377 ~~~~~p~~~i~~~~~~~~y~-~~~~~t~e~i~~fi~~~~~gkl~~~~ 422 (586)
+....|++++++.+++ +|. +.+++|.++|.+|++++++|++....
T Consensus 78 ~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~ 123 (130)
T cd02983 78 GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPTLP 123 (130)
T ss_pred CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccccc
Confidence 8778999999988765 777 88999999999999999999996543
No 158
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=4.1e-10 Score=127.61 Aligned_cols=90 Identities=17% Similarity=0.351 Sum_probs=75.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeC---------------------------CCcHHHHH
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA---------------------------TEENELAH 161 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~ 161 (586)
+++++||+|||+||++|+.++|.|+++++++++ .++.++.|.+ +....+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~--~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD--QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC--CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 589999999999999999999999999999976 3477777742 12335778
Q ss_pred HcCCCCCcEEEEE-eCC-eeeeecCCCCHHHHHHHHHHhcC
Q 007882 162 EYDVQGFPTIYFF-VDG-QHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 162 ~~~i~~~Pt~~~~-~~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
+|+|.++|+++++ ++| ...++.|....+.|.+++...+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 8999999999999 488 44678899999999999988764
No 159
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.09 E-value=6.4e-10 Score=94.30 Aligned_cols=75 Identities=20% Similarity=0.405 Sum_probs=60.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC---------------------------CcHHHHH
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT---------------------------EENELAH 161 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~---------------------------~~~~l~~ 161 (586)
++++++|+||++||++|+.++|.|.++++++++ .++.++.|+.. ....+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~--~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD--DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc--CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 578999999999999999999999999999986 35777777642 1125677
Q ss_pred HcCCCCCcEEEEEe-CC-eeeeecCC
Q 007882 162 EYDVQGFPTIYFFV-DG-QHKAYNGG 185 (586)
Q Consensus 162 ~~~i~~~Pt~~~~~-~g-~~~~~~g~ 185 (586)
.|++.++|++++++ +| ....+.|+
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEecC
Confidence 78999999999996 78 44566663
No 160
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.07 E-value=1.2e-09 Score=95.47 Aligned_cols=78 Identities=27% Similarity=0.483 Sum_probs=62.3
Q ss_pred hCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc---------------------HHHHHHcCC
Q 007882 108 ENNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDV 165 (586)
Q Consensus 108 ~~~~~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i 165 (586)
-++++++|+||++ ||++|+.++|.+.++++.+++. ++.++.|..+.+ ..+.+.|++
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 103 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGV 103 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTC
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCC
Confidence 3689999999999 9999999999999999988774 466666665433 268888998
Q ss_pred C---------CCcEEEEEe-CCe-eeeecCCCC
Q 007882 166 Q---------GFPTIYFFV-DGQ-HKAYNGGRT 187 (586)
Q Consensus 166 ~---------~~Pt~~~~~-~g~-~~~~~g~~~ 187 (586)
. ++|+++++. +|+ ...+.|...
T Consensus 104 ~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 104 TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 8 999999996 784 456666655
No 161
>PLN02412 probable glutathione peroxidase
Probab=99.07 E-value=7.6e-10 Score=98.42 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=70.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------c-HHH----HHHcC------------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E-NEL----AHEYD------------ 164 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~~l----~~~~~------------ 164 (586)
.++++||+||++||++|+.++|.|.++++++++. ++.++.|+++. . .++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 5799999999999999999999999999999873 58888888742 1 111 22211
Q ss_pred ----------------------CCCCcEEEEEe-CC-eeeeecCCCCHHHHHHHHHHhcC
Q 007882 165 ----------------------VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 165 ----------------------i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
|...|+++++. +| ...++.|..+.+.+...|+..+.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 33458999995 88 55788999999999999988764
No 162
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.07 E-value=6.9e-10 Score=92.42 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=48.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEe-CC--Cc-----------------HHHHHHcCCCCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-AT--EE-----------------NELAHEYDVQGF 168 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-~~--~~-----------------~~l~~~~~i~~~ 168 (586)
++++++|+||++||++|+.++|.+.++++.+.+ ++.++.+. .+ +. ..+.+.|++.++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 378999999999999999999999999888754 45555552 11 11 145556677778
Q ss_pred cEEEEEe-CC
Q 007882 169 PTIYFFV-DG 177 (586)
Q Consensus 169 Pt~~~~~-~g 177 (586)
|++++++ +|
T Consensus 97 P~~~vid~~G 106 (114)
T cd02967 97 PYAVLLDEAG 106 (114)
T ss_pred CeEEEECCCC
Confidence 8888876 45
No 163
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.06 E-value=3.6e-10 Score=85.76 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=58.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccc-cCHHHH
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVAL 533 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~-~~~~~l 533 (586)
.|.||++||++|+.+.|.++++++++.. .+.++++| +.+.+..+++.++|++++ +|+.+ +.|. .+.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~~-----~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGELV-----IMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEEE-----EEeccCCHHHH
Confidence 3789999999999999999999999865 58888888 344467899999999998 77653 5663 466788
Q ss_pred HHHH
Q 007882 534 YKFL 537 (586)
Q Consensus 534 ~~~i 537 (586)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7776
No 164
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.06 E-value=8.5e-10 Score=91.94 Aligned_cols=74 Identities=38% Similarity=0.724 Sum_probs=63.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-----------------------HHHHHHcCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------------------NELAHEYDV 165 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 165 (586)
.+++++|.||++||++|+...+.+.++..++.. .++.++.|+++.. ..+++.|++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 478999999999999999999999999999863 3699999999875 678999999
Q ss_pred CCCcEEEEEe-CC-eeeeecC
Q 007882 166 QGFPTIYFFV-DG-QHKAYNG 184 (586)
Q Consensus 166 ~~~Pt~~~~~-~g-~~~~~~g 184 (586)
.++|+++++. +| ....+.|
T Consensus 96 ~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 96 RGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CccceEEEECCCCcEEEEecC
Confidence 9999999996 77 4445554
No 165
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.04 E-value=6.6e-10 Score=82.48 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=50.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 113 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
-++.||++||++|+...+.+.+++.... ++.+..+|.++++++++++++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 4788999999999999999999976532 59999999999999999999999999865
No 166
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.04 E-value=3.3e-08 Score=90.11 Aligned_cols=166 Identities=24% Similarity=0.374 Sum_probs=126.8
Q ss_pred hhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC--eeeeecCC-CCHHHHHHHHHHhcCCCc
Q 007882 127 ALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG--QHKAYNGG-RTKDAIVTWIKKKIGPGI 203 (586)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g--~~~~~~g~-~~~~~l~~~i~~~~~~~~ 203 (586)
.+...|.++|+.+.+ .+.|+.+. +.++++++++.. |++++|+++ ....|.|. .+.+.|.+||....-|.+
T Consensus 7 ~~~~~f~~~A~~~~~---~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG---DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHHHTT---TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHHHhCcC---CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence 356689999999987 68999887 578999999998 999999975 67899998 899999999999999998
Q ss_pred ccccchhHHHHhcccCCeEEEEEecCCCCcch----HHHHHhc-cccCceeEEecC---ChhHHHhcCCCCCCCCCeeEE
Q 007882 204 YNITTLDEAERVLTSETKVVLGYLNSLVGSES----EVLADAS-RLEDDVNFYQTT---NPDVAKIFHLDSKVNRPALVM 275 (586)
Q Consensus 204 ~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~----~~f~~~~-~~~~~~~F~~~~---~~~~~~~~~~~~~~~~p~l~~ 275 (586)
..++. +.+..+.......++.+|........ ..+..++ ++++.+.|..+. .+.+++.+|++. .+.|.+++
T Consensus 80 ~~~t~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi 157 (184)
T PF13848_consen 80 PELTP-ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVI 157 (184)
T ss_dssp EEEST-THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEE
T ss_pred cccch-hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEE
Confidence 88865 67888888876645555543333332 3344455 677888888854 347888999985 35799999
Q ss_pred eccCCcce-ecccCCCChhHHHHHHHh
Q 007882 276 VKKETEKI-SYFDGKFDKSTIADFVFS 301 (586)
Q Consensus 276 ~~~~~~~~-~~y~g~~~~~~i~~fi~~ 301 (586)
+....+.. ..+.++++.+.|.+|++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 158 FDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99665443 335889999999999873
No 167
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.02 E-value=2.8e-09 Score=93.69 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC-------Cc----HHHHHH-cCC-----------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-------EE----NELAHE-YDV----------- 165 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-------~~----~~l~~~-~~i----------- 165 (586)
+|+++||+|||+||++|+.++|.+.++++++++ .++.++.|+|. +. ...+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~--~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~ 98 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP--SHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKIL 98 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh--CCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecC
Confidence 588999999999999999999999999999986 35889999872 11 223322 221
Q ss_pred ---------------CCCcE----EEEEe-CC-eeeeecCCCCHHHHHHHHHHh
Q 007882 166 ---------------QGFPT----IYFFV-DG-QHKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 166 ---------------~~~Pt----~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~ 198 (586)
.++|+ ++++. +| ....|.|..+.+.|...|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 99 GSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13786 77774 78 557889999999988888764
No 168
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.00 E-value=7.6e-09 Score=85.63 Aligned_cols=107 Identities=13% Similarity=0.171 Sum_probs=88.1
Q ss_pred eEEeChhhHHHHHhCCCeEEEEEECC--CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007882 95 VVVLKERNFSDVIENNKFVMVEFYAP--WCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (586)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~lv~f~a~--wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (586)
...++..+++..+..+...+|.|-.+ -++-+-...-.+.++++++.+ .++.++.||+++++.++.+|||.++||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 34456678888887777666665543 466777788899999999964 25999999999999999999999999999
Q ss_pred EEeCCe-eeeecCCCCHHHHHHHHHHhcCCCc
Q 007882 173 FFVDGQ-HKAYNGGRTKDAIVTWIKKKIGPGI 203 (586)
Q Consensus 173 ~~~~g~-~~~~~g~~~~~~l~~~i~~~~~~~~ 203 (586)
+|++|+ .....|..+.+.+.++|.+++..+.
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 999995 4578899999999999999987653
No 169
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.97 E-value=2.8e-09 Score=93.52 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=61.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------c----HHHHHH-cC------------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELAHE-YD------------ 164 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~-~~------------ 164 (586)
+|++++|+|||+||+ |+.++|.|.++++++++ .++.++.|+++. . ..++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~--~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~ 97 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD--RGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVN 97 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC--CCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEecc
Confidence 589999999999999 99999999999999976 358888887632 1 233332 22
Q ss_pred -----------CCCCc-----------EEEEEe-CC-eeeeecCCCCHHHHHHH
Q 007882 165 -----------VQGFP-----------TIYFFV-DG-QHKAYNGGRTKDAIVTW 194 (586)
Q Consensus 165 -----------i~~~P-----------t~~~~~-~g-~~~~~~g~~~~~~l~~~ 194 (586)
+.++| |++++. +| ...++.|..+.+.|.+.
T Consensus 98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 98 GENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 12456 677774 78 55688898888777653
No 170
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.97 E-value=4.3e-09 Score=95.68 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=61.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeC------------------CCcHHHHHHcCCCCCcE
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA------------------TEENELAHEYDVQGFPT 170 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~------------------~~~~~l~~~~~i~~~Pt 170 (586)
++++++|+||++||++|+.+.|.+.++.+... .++.++..|. ....++++.|++.++|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 57899999999999999999999999876532 2454444220 01346778899999999
Q ss_pred EEEEe-CCeeeeecCC-CCHHHHHHHHHHh
Q 007882 171 IYFFV-DGQHKAYNGG-RTKDAIVTWIKKK 198 (586)
Q Consensus 171 ~~~~~-~g~~~~~~g~-~~~~~l~~~i~~~ 198 (586)
.++++ +|++. +.|. ...+.+.+.++..
T Consensus 150 ~~lID~~G~I~-~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 150 GVLLDQDGKIR-AKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEEECCCCeEE-EccCCCCHHHHHHHHHHH
Confidence 99986 67543 3454 3556777777654
No 171
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.96 E-value=5.5e-09 Score=81.58 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=62.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCH
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (586)
+++..+..|+++||++|....+.+.++++.+. ++.+..+|.++.++++++|+|.++||+++ +|.. .+.|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCCCH
Confidence 35677999999999999999999999997753 49999999999999999999999999964 7753 33576555
Q ss_pred HHH
Q 007882 189 DAI 191 (586)
Q Consensus 189 ~~l 191 (586)
+.+
T Consensus 84 ~e~ 86 (89)
T cd03026 84 EEI 86 (89)
T ss_pred HHH
Confidence 554
No 172
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.93 E-value=7.7e-07 Score=83.96 Aligned_cols=312 Identities=17% Similarity=0.175 Sum_probs=189.3
Q ss_pred cccccchhHHHHhcccCCeEEEEEecCCCCcch--HH------HHH-hcc--ccCceeEEecC---ChhHHHhcCCCCCC
Q 007882 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSES--EV------LAD-ASR--LEDDVNFYQTT---NPDVAKIFHLDSKV 268 (586)
Q Consensus 203 ~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~--~~------f~~-~~~--~~~~~~F~~~~---~~~~~~~~~~~~~~ 268 (586)
+..++ ...+.+.+++.+..++.|+.+..+... +. +.+ +|+ -...+.|+.+. +..+++++|+..
T Consensus 36 Vi~Ln-eKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E-- 112 (383)
T PF01216_consen 36 VIDLN-EKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE-- 112 (383)
T ss_dssp CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred eEEcc-hhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence 44443 367888888889888888876653321 11 222 333 36778898864 567999999997
Q ss_pred CCCeeEEeccCCcceecccCCCChhHHHHHHHhcCCCceeecCCCcccccccC-CcccEEEEEEeccchhhHHHHHHHHH
Q 007882 269 NRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES-PIKNQLLLFAVSNDSEKLLPVFEEAA 347 (586)
Q Consensus 269 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~lA 347 (586)
.+++.+|+.. +.+.|.|.++.+.+..||..---..|..++...-...+.+ ....-++-|..+.++. ....+.++|
T Consensus 113 -~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~-~yk~FeeAA 188 (383)
T PF01216_consen 113 -EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE-HYKEFEEAA 188 (383)
T ss_dssp -TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH-HHHHHHHHH
T ss_pred -cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH-HHHHHHHHH
Confidence 6899998754 5899999999999999999877677877777654444433 2234455555554443 556789999
Q ss_pred HhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 007882 348 KSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPI 427 (586)
Q Consensus 348 ~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~~~gkl~~~~ks~~~ 427 (586)
..|..-+.|..+= .+.+++.+|+.. .-+-.|-...........++.+.+.|.+|++.-.
T Consensus 189 e~F~p~IkFfAtf------d~~vAk~L~lK~--nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~------------- 247 (383)
T PF01216_consen 189 EHFQPYIKFFATF------DKKVAKKLGLKL--NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK------------- 247 (383)
T ss_dssp HHCTTTSEEEEE-------SHHHHHHHT-ST--T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT--------------
T ss_pred HhhcCceeEEEEe------cchhhhhcCccc--cceeeeccccCCCccCCCCCCCHHHHHHHHHHhc-------------
Confidence 9999998876543 346678888862 2222233222333334455789999999998842
Q ss_pred CCCCCCCeEEEeCcchhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------cc
Q 007882 428 PETNDGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HR 500 (586)
Q Consensus 428 ~~~~~~~v~~l~~~~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~------~~ 500 (586)
...++.++..++-+.=-+ -+...+|-|...--+.-..+...++++|+....++.+.++.||-+.-+. ..
T Consensus 248 ----rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~t 323 (383)
T PF01216_consen 248 ----RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKT 323 (383)
T ss_dssp ----S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHH
T ss_pred ----hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhh
Confidence 245778888775443322 2456788888888999999999999999998887889999999876543 34
Q ss_pred CCCC-cCcEEEEEeCCCcccCccccc-----cccCHHHHHHHHHhcCCCCcccc
Q 007882 501 AKSD-GFPTILFFPAGNKSFDPINVD-----VDRTVVALYKFLKKNASIPFKIQ 548 (586)
Q Consensus 501 ~~i~-~~Pt~~~~~~g~~~~~~~~~~-----g~~~~~~l~~~i~~~~~~~~~~~ 548 (586)
|+|. .-|.+-+..-...- .+.+. ...+.+.|..||...++-++...
T Consensus 324 F~Idl~~PqIGvVnvtdad--svW~dm~d~~d~pt~~~LedWieDVlsg~i~~e 375 (383)
T PF01216_consen 324 FGIDLSRPQIGVVNVTDAD--SVWMDMDDDDDLPTAEELEDWIEDVLSGKINTE 375 (383)
T ss_dssp HTT-TTS-EEEEEETTTSE--EEEC-STTTSS---HHHHHHHHHHHHCTCCTB-
T ss_pred cCccccCCceeEEeccccc--cchhccCCcccCCcHHHHHHHHHHHhcCCCCCc
Confidence 5554 34998888554332 11222 24589999999999887666543
No 173
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.92 E-value=3.5e-09 Score=112.47 Aligned_cols=98 Identities=28% Similarity=0.461 Sum_probs=77.0
Q ss_pred CcchhHHhh---ccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCccc------cccCCCCcCc
Q 007882 440 GNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE------HHRAKSDGFP 507 (586)
Q Consensus 440 ~~~f~~~v~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~i~~~~id~~~~~------~~~~~i~~~P 507 (586)
.+++++.+. ..+++++|+|||+||++|+.+.+.. .++.+.++ ++.++++|.+.++ ..++++.++|
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 456777653 3468999999999999999998875 56777664 3788899987653 2579999999
Q ss_pred EEEEEe-CCCcccCccccccccCHHHHHHHHHhcC
Q 007882 508 TILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 508 t~~~~~-~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
|+++|+ +|+.+ +..++.|..+.+++.+++++..
T Consensus 537 t~~~~~~~G~~i-~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 537 TILFFDAQGQEI-PDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEEECCCCCCc-ccccccCCCCHHHHHHHHHHhc
Confidence 999996 67664 2347889999999999998753
No 174
>PHA02125 thioredoxin-like protein
Probab=98.92 E-value=2.7e-09 Score=80.90 Aligned_cols=67 Identities=16% Similarity=0.348 Sum_probs=50.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCcccccc-ccCHH
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVV 531 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g-~~~~~ 531 (586)
+++||++||++|+.+.|.|+++. +.++++|.+.+. ..+++|.++||++ .|+.+. ++.| ..+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~---~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD---RFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE---EEeCCCCcHH
Confidence 78999999999999999997652 457888876654 4789999999987 555543 5667 34555
Q ss_pred HHHH
Q 007882 532 ALYK 535 (586)
Q Consensus 532 ~l~~ 535 (586)
+|.+
T Consensus 68 ~l~~ 71 (75)
T PHA02125 68 ELKE 71 (75)
T ss_pred HHHH
Confidence 5554
No 175
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.91 E-value=6e-09 Score=107.16 Aligned_cols=88 Identities=15% Similarity=0.255 Sum_probs=68.5
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC----------------------------Cc--cc
Q 007882 448 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG----------------------------TT--NE 497 (586)
Q Consensus 448 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~----------------------------~~--~~ 497 (586)
+..++++||.|||+||++|+.++|.++++++.++. .++.++.|.. +. ..
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 45789999999999999999999999999998864 2354544432 11 11
Q ss_pred cccCCCCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHh
Q 007882 498 HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKK 539 (586)
Q Consensus 498 ~~~~~i~~~Pt~~~~-~~g~~~~~~~~~~g~~~~~~l~~~i~~ 539 (586)
...++|.++|+++++ ++|+.+. .+.|..+.++|.++|+.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIRN 171 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHHH
Confidence 246899999999766 6787765 78899999999999984
No 176
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.90 E-value=7.2e-09 Score=89.68 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=63.0
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------c-c-ccC---CCCcCcEEEEEeC
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------E-H-HRA---KSDGFPTILFFPA 514 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~-----------~-~-~~~---~i~~~Pt~~~~~~ 514 (586)
++..+|+|||+||++|++.+|.+++++++++ ..+..+.+|.... . . ..+ ++.++||.+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4567999999999999999999999999874 2466666664320 0 1 123 6889999999954
Q ss_pred -CCcccCccccccccCHHHHHHHHHhc
Q 007882 515 -GNKSFDPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 515 -g~~~~~~~~~~g~~~~~~l~~~i~~~ 540 (586)
|+.+. ..+.|..+.+++.+.|.+.
T Consensus 128 ~G~~i~--~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAY--PVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEE--EEeecccCHHHHHHHHHHh
Confidence 45431 1567999999998888754
No 177
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.89 E-value=1.3e-08 Score=82.33 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=84.9
Q ss_pred cccccchhHHHHhcc-cCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEecCChhHHHhcCCCCCCCCCeeEEeccCC
Q 007882 203 IYNITTLDEAERVLT-SETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKET 280 (586)
Q Consensus 203 ~~~i~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 280 (586)
+..|.+.+++++|+. .++.++||||.+..+..+..|..++ .++.++.|+++.++.+++.+++. .|.+++++..+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCC
Confidence 467788899999999 8999999999998999999999988 56699999999999999999876 48899998756
Q ss_pred cceecc-cCCCChhHHHHHHHhcC
Q 007882 281 EKISYF-DGKFDKSTIADFVFSNK 303 (586)
Q Consensus 281 ~~~~~y-~g~~~~~~i~~fi~~~~ 303 (586)
+....| .|.++.+.|..||..+.
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 666778 88889999999998764
No 178
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.88 E-value=5.2e-09 Score=85.37 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=79.1
Q ss_pred eeecCCCcccccccCCcccEEEEEEe-----ccchhhHHHHHHHHHHhcc-CceEEEEEECCCcccccccccccCccCCC
Q 007882 307 VTIFTRENAPSVFESPIKNQLLLFAV-----SNDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA 380 (586)
Q Consensus 307 v~~lt~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~l~~lA~~~~-~~~~f~~vd~~~~~~~~~~~~~~gi~~~~ 380 (586)
|.++|.+|...++..+ .+++++.. ..+.+.+...++++|++|+ +++.|+++|.+... ..++.||++...
T Consensus 1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCccc
Confidence 3467777877775433 33343322 2446789999999999999 79999999987633 478899999866
Q ss_pred --CceEEEecCCCCCcccCCCCC-CHHHHHHHHHHHh
Q 007882 381 --PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL 414 (586)
Q Consensus 381 --~p~~~i~~~~~~~~y~~~~~~-t~e~i~~fi~~~~ 414 (586)
.|++++++.+. .+|.+.+++ |.++|.+|+++|+
T Consensus 76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 89999987654 899888889 9999999999874
No 179
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.8e-08 Score=80.14 Aligned_cols=105 Identities=18% Similarity=0.286 Sum_probs=76.1
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHH---HHHHhhcCCCceEEEEEeCCC----------------cHHHHHHcCCCCC
Q 007882 108 ENNKFVMVEFYAPWCGHCQALAPEYAA---AATELKSANESVVLAKVDATE----------------ENELAHEYDVQGF 168 (586)
Q Consensus 108 ~~~~~~lv~f~a~wC~~C~~~~p~~~~---~~~~~~~~~~~v~~~~vd~~~----------------~~~l~~~~~i~~~ 168 (586)
..+++.+++|-++.|..|-++...+.. +.+.+.+ .+.++.+|... .++|++.|++++.
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 357899999999999999998876543 3444444 57788887653 2489999999999
Q ss_pred cEEEEEe-CC-eeeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHh
Q 007882 169 PTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERV 215 (586)
Q Consensus 169 Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~ 215 (586)
||+++|+ .| ......|.+..+.+...++...........+.+++..-
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~kk 165 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFTKK 165 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 9999997 77 55678899999988766655544434444444444433
No 180
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.87 E-value=5.6e-09 Score=87.84 Aligned_cols=75 Identities=25% Similarity=0.509 Sum_probs=62.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-------------------------HHHHHc
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------------------------ELAHEY 163 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~ 163 (586)
.|+.+.++|.|.||+||+.+.|.+.+++++++..+..+.++-|+.+.+. +++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999999987666777777665432 788899
Q ss_pred CCCCCcEEEEEe-CCeeeeec
Q 007882 164 DVQGFPTIYFFV-DGQHKAYN 183 (586)
Q Consensus 164 ~i~~~Pt~~~~~-~g~~~~~~ 183 (586)
+|.++|+++++. +|..+.-.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVTED 132 (157)
T ss_pred ccCcCceeEEecCCCCEehHh
Confidence 999999999996 78555433
No 181
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.86 E-value=1.1e-09 Score=90.80 Aligned_cols=84 Identities=20% Similarity=0.386 Sum_probs=57.9
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHH---HhcCCCcEEEEEEeCCccc----------------------cccCCC
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE----------------------HHRAKS 503 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~---~~~~~~~i~~~~id~~~~~----------------------~~~~~i 503 (586)
.++++++|+|+++||++|+.+.+.+..... .+.. ++.++.++..... ...++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 457899999999999999999999986543 3333 3555555554321 246899
Q ss_pred CcCcEEEEEe-CCCcccCccccccccCHHHHHHHH
Q 007882 504 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 504 ~~~Pt~~~~~-~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
.++||++++. +|+.+. ++.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~---~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVY---RIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence 9999999995 677664 688999999998875
No 182
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.86 E-value=7.4e-09 Score=99.01 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=69.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc-----------cccccCCCCcCcEEEEEeC-CCc
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------NEHHRAKSDGFPTILFFPA-GNK 517 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~-----------~~~~~~~i~~~Pt~~~~~~-g~~ 517 (586)
.++.+||+||++||++|+.+.|.++++++++. ..+..+.+|... .....++|.++|+++++.. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 36789999999999999999999999999874 246566666532 2235789999999999976 555
Q ss_pred ccCccccccccCHHHHHHHHHhcCC
Q 007882 518 SFDPINVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 518 ~~~~~~~~g~~~~~~l~~~i~~~~~ 542 (586)
+ .+ ...|..+.++|.+.+...+.
T Consensus 243 v-~~-v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 F-TP-IGFGVMSADELVDRILLAAH 265 (271)
T ss_pred E-EE-EEeCCCCHHHHHHHHHHHhc
Confidence 4 22 34588899999999887654
No 183
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.86 E-value=1.6e-08 Score=82.03 Aligned_cols=95 Identities=20% Similarity=0.350 Sum_probs=82.5
Q ss_pred cccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEecCChhHHHhcCCCCCCCCCeeEEecc---
Q 007882 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKK--- 278 (586)
Q Consensus 203 ~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~--- 278 (586)
+..+.+.+++++|+...+.++||||.+.....+..|..++ .+++++.|+++.++.+++.+++ . |.+++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4567889999999999999999999998888999999988 5679999999999999999987 4 78999954
Q ss_pred ---CCcceecccCCCChhHHHHHHHhc
Q 007882 279 ---ETEKISYFDGKFDKSTIADFVFSN 302 (586)
Q Consensus 279 ---~~~~~~~y~g~~~~~~i~~fi~~~ 302 (586)
.++....|.|.++.+.|.+||..+
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 445667899999999999999876
No 184
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.85 E-value=5.2e-08 Score=80.82 Aligned_cols=94 Identities=15% Similarity=0.280 Sum_probs=74.0
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCCceEEEEEeCC--CcHHHHHHcCCCCCcEEEEEe--
Q 007882 103 FSDVIENNKFVMVEFYAPWCGHCQALAPE-Y--AAAATELKSANESVVLAKVDAT--EENELAHEYDVQGFPTIYFFV-- 175 (586)
Q Consensus 103 ~~~~~~~~~~~lv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~-- 175 (586)
++.+.+++++++|+|+++||++|+.+... | ..+.+.++. .+.+..+|.. +...++..|++.++|+++++.
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~ 86 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR 86 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc
Confidence 34445678999999999999999998753 3 234444544 6888888886 346789999999999999996
Q ss_pred CC-eeeeecCCCCHHHHHHHHHHhc
Q 007882 176 DG-QHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 176 ~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
+| ...+..|..+.+.+.+.+++..
T Consensus 87 ~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 87 TGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 57 5678899999999998887754
No 185
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.84 E-value=2.3e-08 Score=80.44 Aligned_cols=95 Identities=25% Similarity=0.462 Sum_probs=83.5
Q ss_pred ccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEecCChhHHHhcCCCCCCCCCeeEEeccCCcc
Q 007882 204 YNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEK 282 (586)
Q Consensus 204 ~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 282 (586)
..+.+.++++.++...+.++||||.+.++..+..|..++ .+++.+.|+.+.++.+++++++. .|++++|++.++.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccC
Confidence 467788899999999999999999998888899999988 56678999999999999998775 4899999987777
Q ss_pred eecccCCCChhHHHHHHHhc
Q 007882 283 ISYFDGKFDKSTIADFVFSN 302 (586)
Q Consensus 283 ~~~y~g~~~~~~i~~fi~~~ 302 (586)
...|.|.++.++|.+||..+
T Consensus 78 ~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CccCCCCCCHHHHHHHHHhC
Confidence 88899999999999999764
No 186
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.82 E-value=1.6e-08 Score=83.99 Aligned_cols=75 Identities=24% Similarity=0.433 Sum_probs=55.9
Q ss_pred chhHHhhccCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCCcEEEEEEeCCcccc--c--------cCCCCcCcE
Q 007882 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--H--------RAKSDGFPT 508 (586)
Q Consensus 442 ~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~i~~~~id~~~~~~--~--------~~~i~~~Pt 508 (586)
.+... ...+++++|.|+++||++|+.|.+. | .+++..+.. +++++.+|.+.+.. . .+++.++|+
T Consensus 7 al~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 7 AFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 34443 4678999999999999999999873 3 356665543 58899999876542 1 258899999
Q ss_pred EEEE-eCCCccc
Q 007882 509 ILFF-PAGNKSF 519 (586)
Q Consensus 509 ~~~~-~~g~~~~ 519 (586)
++|+ ++|+.+.
T Consensus 84 ~vfl~~~G~~~~ 95 (124)
T cd02955 84 NVFLTPDLKPFF 95 (124)
T ss_pred EEEECCCCCEEe
Confidence 9999 6677764
No 187
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.80 E-value=3.6e-08 Score=89.16 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=64.2
Q ss_pred CCCeE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------c-H---HH-HHHc------------
Q 007882 109 NNKFV-MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E-N---EL-AHEY------------ 163 (586)
Q Consensus 109 ~~~~~-lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~---~l-~~~~------------ 163 (586)
+|+++ ++.+||+||++|+.++|.|.++++++++ .++.++.|+|+. . . .. .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~--~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~ 116 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS--QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEV 116 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh--CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEec
Confidence 57754 4556999999999999999999999987 358888888631 0 1 11 1121
Q ss_pred ------------------------CCCCCcE---EEEEe-CC-eeeeecCCCCHHHHHHHHHHhc
Q 007882 164 ------------------------DVQGFPT---IYFFV-DG-QHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 164 ------------------------~i~~~Pt---~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
++.++|+ +++++ +| ...+|.|..+.+.+.+.|.+.+
T Consensus 117 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 117 NGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 2446784 57774 88 5568889999988888887765
No 188
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.78 E-value=3.3e-08 Score=76.45 Aligned_cols=70 Identities=33% Similarity=0.604 Sum_probs=53.0
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007882 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 102 ~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (586)
.+.++.+++++++|+|+++||++|+.+...+ ..+.+.+.. ++.++.||.+.........+ .++|+++++.
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 3455567899999999999999999998876 344443555 79999999987655432222 6799999985
No 189
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.78 E-value=8.1e-08 Score=86.19 Aligned_cols=91 Identities=19% Similarity=0.339 Sum_probs=70.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-----------------------------cHHH
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-----------------------------ENEL 159 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------------~~~l 159 (586)
+++++||+||++||+.|...++.+.++++++.+ .++.++.|.++. ...+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~--~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA--KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh--CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 678999999999999999999999999999975 358888887643 1256
Q ss_pred HHHcCCCCCcEEEEEe-CCeeeeec-----------CCCCHHHHHHHHHHhcCCC
Q 007882 160 AHEYDVQGFPTIYFFV-DGQHKAYN-----------GGRTKDAIVTWIKKKIGPG 202 (586)
Q Consensus 160 ~~~~~i~~~Pt~~~~~-~g~~~~~~-----------g~~~~~~l~~~i~~~~~~~ 202 (586)
++.|++...|++++++ +|++. |. +..+.+.+.+.|+..+...
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEE-EeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 7788999999999996 67433 22 2345677888888877554
No 190
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.75 E-value=2.6e-08 Score=85.09 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=52.1
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC------CcEEEEEEeCCcccc-------------------------
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH------------------------- 498 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~------~~i~~~~id~~~~~~------------------------- 498 (586)
.+++++|+|||+||++|+.++|.+.++.+++.+. .++.++.|+.+.+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877542 246666666553211
Q ss_pred --ccCCCCcCcEEEEEe-CCCcc
Q 007882 499 --HRAKSDGFPTILFFP-AGNKS 518 (586)
Q Consensus 499 --~~~~i~~~Pt~~~~~-~g~~~ 518 (586)
..|++.++|+.+++. +|+.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEE
Confidence 136788999999995 55544
No 191
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.74 E-value=3.8e-08 Score=89.27 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=62.2
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--ccc-----------------------ccCCC
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH-----------------------HRAKS 503 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~--~~~-----------------------~~~~i 503 (586)
..+++++|+||++||++|+...|.+.++.+. ++.++.++.+. ... ..|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 3578999999999999999999999998652 24444454322 110 14688
Q ss_pred CcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 504 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 504 ~~~Pt~~~~-~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
.++|+.+++ ++|+.+. ++.|..+.+.+.++|....
T Consensus 141 ~~~P~t~vid~~G~i~~---~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPETFLIDGNGIIRY---RHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCeEEEECCCceEEE---EEecCCCHHHHHHHHHHHH
Confidence 999977777 5776654 7778888888888877654
No 192
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.74 E-value=4.5e-08 Score=78.37 Aligned_cols=66 Identities=24% Similarity=0.492 Sum_probs=49.3
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-------------------------ccCCC
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-------------------------HRAKS 503 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~-------------------------~~~~i 503 (586)
+++++|+|||+||++|+...|.+.++.++++...++.++.|..+.+. . ..++|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 57899999999999999999999999999994345666666665431 1 12688
Q ss_pred CcCcEEEEEeCCC
Q 007882 504 DGFPTILFFPAGN 516 (586)
Q Consensus 504 ~~~Pt~~~~~~g~ 516 (586)
.++|+++++....
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 8999999986543
No 193
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.73 E-value=2.2e-08 Score=82.88 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=51.7
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHHH---HHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe-CC
Q 007882 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEYA---AAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV-DG 177 (586)
Q Consensus 102 ~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g 177 (586)
.+..+.+++|+++|+|+++||++|+.+...+- ++.+.++. ++..+.++.+....-....+ .++||++|+. +|
T Consensus 15 al~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g 90 (130)
T cd02960 15 GLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSL 90 (130)
T ss_pred HHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcCccC-cccCeEEEECCCC
Confidence 34445578999999999999999999988643 23333333 46666666542211111233 6899999996 77
Q ss_pred -eeeeecCCC
Q 007882 178 -QHKAYNGGR 186 (586)
Q Consensus 178 -~~~~~~g~~ 186 (586)
...+..|..
T Consensus 91 ~vi~~i~Gy~ 100 (130)
T cd02960 91 TVRADITGRY 100 (130)
T ss_pred CCcccccccc
Confidence 344445533
No 194
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.73 E-value=8.5e-08 Score=86.39 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=74.7
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------------
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------- 496 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~----------------- 496 (586)
.+..++++.+.-... .+++++|+||++||++|+...+.+.++.+++.+. ++.++.++.+..
T Consensus 45 ~~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 345566665543332 4688999999999999999999999999998763 455666654322
Q ss_pred -------ccccCCCCcCcEEEEEe-CCCcccCccccccccCHHHHHHHHHh
Q 007882 497 -------EHHRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKK 539 (586)
Q Consensus 497 -------~~~~~~i~~~Pt~~~~~-~g~~~~~~~~~~g~~~~~~l~~~i~~ 539 (586)
....+++..+|+++++. +|+.+. .+.|..+.+++.+++.+
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~---~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVK---VITGEMTEEQLEEYLEK 170 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEE---EEeCCCCHHHHHHHHHH
Confidence 12568999999998885 555543 67888999999998874
No 195
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.72 E-value=3.3e-09 Score=94.05 Aligned_cols=104 Identities=31% Similarity=0.564 Sum_probs=93.0
Q ss_pred CeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
.+..++++|+...+.. -+++.|+|+||+.|+...|.|...+.--.+ .+|.++.||.+.++.|.-+|-+...||++-
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEeccccceeeEEEecceEEE
Confidence 6889999999999853 479999999999999999999998865444 679999999999999999999999999999
Q ss_pred EeCCeeeeecCCCCHHHHHHHHHHhcCC
Q 007882 174 FVDGQHKAYNGGRTKDAIVTWIKKKIGP 201 (586)
Q Consensus 174 ~~~g~~~~~~g~~~~~~l~~~i~~~~~~ 201 (586)
.++|...+|.|.++...+.+|+...--.
T Consensus 101 vkDGeFrrysgaRdk~dfisf~~~r~w~ 128 (248)
T KOG0913|consen 101 VKDGEFRRYSGARDKNDFISFEEHREWQ 128 (248)
T ss_pred eeccccccccCcccchhHHHHHHhhhhh
Confidence 9999999999999999999999866533
No 196
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.71 E-value=7e-08 Score=86.58 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=63.2
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-------------------------ccccccCCC
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-------------------------TNEHHRAKS 503 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~-------------------------~~~~~~~~i 503 (586)
..+++++|+||++||++|+.+.|.++++.+. ++.++.++.+ ......|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3578999999999999999999999988753 1333444321 111235788
Q ss_pred CcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 504 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 504 ~~~Pt~~~~-~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
.++|+.+++ ++|+.+. ++.|..+.+++.+++.+..
T Consensus 136 ~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 136 YGAPETFLVDGNGVILY---RHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eeCCeEEEEcCCceEEE---EEeccCCHHHHHHHHHHHh
Confidence 899976666 6777664 6778899999999998765
No 197
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.71 E-value=4.9e-08 Score=83.42 Aligned_cols=69 Identities=29% Similarity=0.538 Sum_probs=51.9
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-Cc--EEEEEEeCCcc------------------------ccccCC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DS--IVIAKMDGTTN------------------------EHHRAK 502 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~--i~~~~id~~~~------------------------~~~~~~ 502 (586)
.++++||+||++||++|+.+.|.+.++.+.+... .+ +.++.+|.... ....|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4689999999999999999999999999888653 23 44445543321 114689
Q ss_pred CCcCcEEEEEe-CCCcc
Q 007882 503 SDGFPTILFFP-AGNKS 518 (586)
Q Consensus 503 i~~~Pt~~~~~-~g~~~ 518 (586)
+.++|+++++. +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999996 55543
No 198
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.70 E-value=4.9e-08 Score=83.44 Aligned_cols=68 Identities=28% Similarity=0.529 Sum_probs=51.0
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCccc--------------------------c-ccC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--------------------------H-HRA 501 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~i~~~~id~~~~~--------------------------~-~~~ 501 (586)
.++.++|+||++||++|+.+.|.++++++.+++. .++.++.++.+.+. . ..|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4789999999999999999999999999988754 24444444433211 1 348
Q ss_pred CCCcCcEEEEEeC-CCc
Q 007882 502 KSDGFPTILFFPA-GNK 517 (586)
Q Consensus 502 ~i~~~Pt~~~~~~-g~~ 517 (586)
++.++|+++++.. |+.
T Consensus 96 ~v~~iPt~~lid~~G~i 112 (132)
T cd02964 96 KVEGIPTLVVLKPDGDV 112 (132)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 8999999999964 544
No 199
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.69 E-value=3.4e-08 Score=83.90 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=56.0
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC-------------------------CccccccCCCC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG-------------------------TTNEHHRAKSD 504 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~-------------------------~~~~~~~~~i~ 504 (586)
.+++++|+||++||++|+.+.|.++++.+.+. +.++.++. .......+++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 37899999999999999999999999987752 44444442 11223468999
Q ss_pred cCcEEEEE-eCCCcccCccccccccCHHHH
Q 007882 505 GFPTILFF-PAGNKSFDPINVDVDRTVVAL 533 (586)
Q Consensus 505 ~~Pt~~~~-~~g~~~~~~~~~~g~~~~~~l 533 (586)
++|+.+++ ++|+.+. ++.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~---~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRY---KHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEE---EEeccCChHhc
Confidence 99966666 6777654 67787776543
No 200
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.68 E-value=1.3e-07 Score=76.72 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=81.5
Q ss_pred cccccchhHHHHhcccC-CeEEEEEecCCCCcchHHHHHhc-cccCceeEEecCChhHHHhcCCCCCCCCCeeEEec---
Q 007882 203 IYNITTLDEAERVLTSE-TKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVK--- 277 (586)
Q Consensus 203 ~~~i~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~--- 277 (586)
+..+.+.++++.|+... +.++||||.+.....+..|..++ .++.++.|+++.+..+.+.+++. .|.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~~ 77 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPEK 77 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcHH
Confidence 56788999999999887 99999999998888899999888 67799999999999999999886 47899994
Q ss_pred ---cCCcceecccCC-CChhH-HHHHHHhc
Q 007882 278 ---KETEKISYFDGK-FDKST-IADFVFSN 302 (586)
Q Consensus 278 ---~~~~~~~~y~g~-~~~~~-i~~fi~~~ 302 (586)
..++....|.|. .+.++ |..||+.|
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 456678889988 77756 99999865
No 201
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.68 E-value=4.8e-08 Score=72.39 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=45.1
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 511 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~ 511 (586)
-++.|+++||++|+.+.+.+++++.... .+.+..+|.+.+. ..++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 3678999999999999999999987642 4777777776544 47899999999865
No 202
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.67 E-value=1.7e-07 Score=95.37 Aligned_cols=96 Identities=27% Similarity=0.474 Sum_probs=77.8
Q ss_pred hHHHHHhCCC--eEEEEEECCCChhhhhhhHHHH-HHHHHhhcCCCceEEEEEeCCCc----HHHHHHcCCCCCcEEEEE
Q 007882 102 NFSDVIENNK--FVMVEFYAPWCGHCQALAPEYA-AAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFF 174 (586)
Q Consensus 102 ~~~~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~-~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~ 174 (586)
.+++.+.+++ +++|+|||+||-.||.+.+..- +.....+- .++....+|.+++ .++.++||+-+.|++++|
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--QDVVLLQADVTANDPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--CCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 7888887776 9999999999999999988644 33333322 3599999999876 478899999999999999
Q ss_pred e-CC-eeeeecCCCCHHHHHHHHHHhc
Q 007882 175 V-DG-QHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 175 ~-~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
. +| ......|.++.+.+.+++++..
T Consensus 542 ~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 542 GPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 8 66 4455889999999999998753
No 203
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.67 E-value=8.8e-08 Score=80.84 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=64.8
Q ss_pred EEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC----------------------
Q 007882 437 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------------------- 494 (586)
Q Consensus 437 ~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~---------------------- 494 (586)
.+++..+..... .+++++|+||++||++|+.+.|.+.++++.+ .+..+.+|..
T Consensus 7 ~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 344555555443 4589999999999999999999999998773 2333333321
Q ss_pred -ccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHH
Q 007882 495 -TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 535 (586)
Q Consensus 495 -~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~ 535 (586)
......++|.++|+++++.+++.+. .+.|..+.+.|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~~---~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIVF---VTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeEE---EEeccCCHHHHHh
Confidence 1223578999999999997766443 6778888888764
No 204
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.65 E-value=1.8e-07 Score=80.96 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=65.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---------------------cHHHHHHcCCC
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------ENELAHEYDVQ 166 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~ 166 (586)
.+++++|+|| ++||+.|....|.+.++++++.+. ++.++.|..+. ...+.+.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4789999999 589999999999999999998763 46666665542 23677778888
Q ss_pred CC---------cEEEEEe-CC-eeeeecCCCCHHHHHHH
Q 007882 167 GF---------PTIYFFV-DG-QHKAYNGGRTKDAIVTW 194 (586)
Q Consensus 167 ~~---------Pt~~~~~-~g-~~~~~~g~~~~~~l~~~ 194 (586)
.. |++++++ +| ....+.|....+.+.+-
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 87 8999996 68 45678887776666554
No 205
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.62 E-value=2.8e-07 Score=76.40 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=85.5
Q ss_pred eEEEeCcchhHHhhccCCcEEEEEeCC--CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEE
Q 007882 435 VKIVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTIL 510 (586)
Q Consensus 435 v~~l~~~~f~~~v~~~~~~~~v~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~ 510 (586)
...++..+++.++ ......+|+|-.. .++.+....-++.++++.+.+ .++.++.+|.+.+. +.+|+|+++||++
T Consensus 19 ~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 3456668888887 4455666666544 688899999999999999964 35888888887766 4899999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHHHhcCCCC
Q 007882 511 FFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 544 (586)
Q Consensus 511 ~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 544 (586)
+|++|+.+. ++.|.++.+.+.++|.+.+..+
T Consensus 97 ~FkdGk~v~---~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 97 VFTGGNYRG---VLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEECCEEEE---EEeCcCCHHHHHHHHHHHhcCc
Confidence 999999986 7889999999999999988765
No 206
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.60 E-value=1.3e-07 Score=107.66 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=71.4
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe-----CCcc------------------------cccc
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD-----GTTN------------------------EHHR 500 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id-----~~~~------------------------~~~~ 500 (586)
.++++||.|||+||++|+...|.|+++.+++++. .+.++.+. .+.. ....
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999998763 46666663 2110 1136
Q ss_pred CCCCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhcCC
Q 007882 501 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 501 ~~i~~~Pt~~~~-~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~ 542 (586)
|++.++|+++++ ++|+.+. ++.|....+.|.++|...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHHHH
Confidence 799999999999 6787764 68898899999999987654
No 207
>smart00594 UAS UAS domain.
Probab=98.60 E-value=3.8e-07 Score=76.39 Aligned_cols=89 Identities=10% Similarity=0.254 Sum_probs=67.2
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCCceEEEEEeCCC--cHHHHHHcCCCCCcEEEEEe-CC
Q 007882 104 SDVIENNKFVMVEFYAPWCGHCQALAPE-Y--AAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTIYFFV-DG 177 (586)
Q Consensus 104 ~~~~~~~~~~lv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~-~g 177 (586)
+.+.+++|+++|+|+++||++|+.+... | .++.+.++. ++.+..+|... ...++..|++.++|++.++. +|
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence 3444678999999999999999997764 2 223334443 68888888654 35789999999999999995 44
Q ss_pred --e----eeeecCCCCHHHHHHHH
Q 007882 178 --Q----HKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 178 --~----~~~~~g~~~~~~l~~~i 195 (586)
. ..+..|..+.+.+..++
T Consensus 98 g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 98 GQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CceeEEEeccccCCCCHHHHHHhh
Confidence 2 34678999999888765
No 208
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.59 E-value=3.5e-07 Score=77.31 Aligned_cols=67 Identities=24% Similarity=0.564 Sum_probs=57.0
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc---------------------HHHHHHcCCC
Q 007882 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDVQ 166 (586)
Q Consensus 109 ~~~~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~ 166 (586)
.+++++|.||++ ||++|+...+.|.++..+++. .++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD--KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc--ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 579999999999 999999999999999999986 3588888887543 2677888888
Q ss_pred ------CCcEEEEEeCC
Q 007882 167 ------GFPTIYFFVDG 177 (586)
Q Consensus 167 ------~~Pt~~~~~~g 177 (586)
.+|+++++..+
T Consensus 102 ~~~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPD 118 (124)
T ss_dssp ETTTSEESEEEEEEETT
T ss_pred cccCCceEeEEEEECCC
Confidence 89999999744
No 209
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.57 E-value=1.7e-07 Score=73.19 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=55.9
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007882 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 529 (586)
Q Consensus 452 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~--~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~ 529 (586)
..-+..|+++||++|..+.+.+++++..+. ++.+..+|.+.. ...+|+|.++|++++ +|+.+ +.|..+
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~-----~~G~~~ 82 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF-----GFGRMT 82 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEE-----EeCCCC
Confidence 346888999999999999999999998764 366666666554 458999999999975 77654 457666
Q ss_pred HHHHH
Q 007882 530 VVALY 534 (586)
Q Consensus 530 ~~~l~ 534 (586)
.++++
T Consensus 83 ~~e~~ 87 (89)
T cd03026 83 LEEIL 87 (89)
T ss_pred HHHHh
Confidence 66654
No 210
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.56 E-value=1.4e-07 Score=78.46 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=30.0
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 482 (586)
.+++++|+||++||++|+.+.|.++++++.+.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~ 52 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD 52 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC
Confidence 478999999999999999999999999888755
No 211
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.56 E-value=3.5e-07 Score=75.80 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=50.9
Q ss_pred chhHHh---hccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCccc-cccCCCCcCcEEEEE-e
Q 007882 442 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFF-P 513 (586)
Q Consensus 442 ~f~~~v---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~i~~~~id~~~~~-~~~~~i~~~Pt~~~~-~ 513 (586)
+|++.+ ...+++++|+|+++||++|+.+...+ .++.+.+.. +++.+.++.+..+ ........+||++|+ +
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g~~vPtivFld~ 88 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDGQYVPRIMFVDP 88 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccCcccCeEEEECC
Confidence 455443 45689999999999999999999875 344444433 4776777765332 111133689999999 5
Q ss_pred CCCccc
Q 007882 514 AGNKSF 519 (586)
Q Consensus 514 ~g~~~~ 519 (586)
+|+.+.
T Consensus 89 ~g~vi~ 94 (130)
T cd02960 89 SLTVRA 94 (130)
T ss_pred CCCCcc
Confidence 565554
No 212
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.54 E-value=7.2e-07 Score=79.37 Aligned_cols=66 Identities=15% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-----------------------cHHHHHHcC
Q 007882 109 NNKFVMVEFYAPW-CGHCQALAPEYAAAATELKSANESVVLAKVDATE-----------------------ENELAHEYD 164 (586)
Q Consensus 109 ~~~~~lv~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~ 164 (586)
.|++++|+||++| |++|..++|.|.++++++. ++.++.|+++. ...+++.||
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 5789999999999 9999999999999998873 47777776642 126777888
Q ss_pred CCCCc---------EEEEEe-CCe
Q 007882 165 VQGFP---------TIYFFV-DGQ 178 (586)
Q Consensus 165 i~~~P---------t~~~~~-~g~ 178 (586)
+...| +++++. +|+
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G~ 142 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENNK 142 (167)
T ss_pred CeecccccCCceeeEEEEECCCCe
Confidence 87777 888886 773
No 213
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.54 E-value=3.9e-07 Score=76.24 Aligned_cols=66 Identities=39% Similarity=0.754 Sum_probs=60.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC-CcHHHHHHcC--CCCCcEEEEEeCCe
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAHEYD--VQGFPTIYFFVDGQ 178 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Pt~~~~~~g~ 178 (586)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ..+.+...++ +..+|++.++.+|.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcc
Confidence 67899999999999999999999999999876 6899999997 7889999999 99999999888883
No 214
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.53 E-value=9.1e-07 Score=79.44 Aligned_cols=88 Identities=16% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc----------------------------HHH
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l 159 (586)
.+++++|+|| ++||++|....|.|.++++++... ++.++.|.++.. ..+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 4789999999 899999999999999999999873 466666655431 245
Q ss_pred HHHcCCC------CCcEEEEEe-CCe-eeeecC----CCCHHHHHHHHHHh
Q 007882 160 AHEYDVQ------GFPTIYFFV-DGQ-HKAYNG----GRTKDAIVTWIKKK 198 (586)
Q Consensus 160 ~~~~~i~------~~Pt~~~~~-~g~-~~~~~g----~~~~~~l~~~i~~~ 198 (586)
++.|++. ..|++++++ +|+ ...+.+ ..+.+.+.+.|+..
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 5667775 578999996 773 345533 23566777777654
No 215
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.52 E-value=5.7e-07 Score=74.57 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=69.2
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEEEEe--CCCcc
Q 007882 448 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP--AGNKS 518 (586)
Q Consensus 448 ~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~i~~~~id~~~~~~----~~~~i~~~Pt~~~~~--~g~~~ 518 (586)
...+++++|+|+++||++|+.+... | .++.+.+.. ++++..+|.+..+. ..+++.++|+++++. +|+.+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 3467899999999999999998764 3 445555544 58888888876443 568999999999995 46666
Q ss_pred cCccccccccCHHHHHHHHHhcC
Q 007882 519 FDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 519 ~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
. ++.|..+.+.++..|++..
T Consensus 92 ~---~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 K---VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred E---EEcCCCCHHHHHHHHHHHH
Confidence 4 7889999999999888754
No 216
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.52 E-value=3e-07 Score=76.30 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=58.9
Q ss_pred EeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc---------------------
Q 007882 438 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--------------------- 496 (586)
Q Consensus 438 l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~--------------------- 496 (586)
+++..+...-. .+++++|+||++||++|+...+.+.++...+.. ..+.++.++.+.+
T Consensus 7 ~~g~~~~~~~~-~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (116)
T cd02966 7 LDGKPVSLSDL-KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLD 84 (116)
T ss_pred CCCCEeehHHc-CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEc
Confidence 34444444322 378999999999999999999999999999863 4577777777663
Q ss_pred ----ccccCCCCcCcEEEEEe-CCCcc
Q 007882 497 ----EHHRAKSDGFPTILFFP-AGNKS 518 (586)
Q Consensus 497 ----~~~~~~i~~~Pt~~~~~-~g~~~ 518 (586)
....|++.++|+++++. +|+.+
T Consensus 85 ~~~~~~~~~~~~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 85 PDGELAKAYGVRGLPTTFLIDRDGRIR 111 (116)
T ss_pred CcchHHHhcCcCccceEEEECCCCcEE
Confidence 12567888999999994 56554
No 217
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2e-07 Score=81.47 Aligned_cols=83 Identities=18% Similarity=0.466 Sum_probs=70.9
Q ss_pred eEEe-ChhhHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCC-----
Q 007882 95 VVVL-KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ----- 166 (586)
Q Consensus 95 v~~l-~~~~~~~~~~~--~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----- 166 (586)
+..+ +++.++..+.+ ...|+|.|+|.|.+.|++..|.|.++..+|.. +...|++||....++.+.+|+|.
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceeeccCcChHHheeeccCccc
Confidence 5556 45666666643 47899999999999999999999999999977 46999999999999999999875
Q ss_pred -CCcEEEEEeCCee
Q 007882 167 -GFPTIYFFVDGQH 179 (586)
Q Consensus 167 -~~Pt~~~~~~g~~ 179 (586)
..||+++|.+|+.
T Consensus 204 rQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 204 RQLPTYILFQKGKE 217 (265)
T ss_pred ccCCeEEEEccchh
Confidence 6999999999944
No 218
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.50 E-value=9e-07 Score=77.48 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=35.9
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE 156 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~ 156 (586)
+..+|+.||++||++|+.++|.|.++++++.+ .++.++.|+.+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~--~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA--LGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh--cCeEEEEEeCCCH
Confidence 44555556799999999999999999999976 3588888887644
No 219
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.50 E-value=9.9e-07 Score=80.06 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=62.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------------------------cHHHHHH
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------------------------ENELAHE 162 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 162 (586)
.|+++||+|| ++||++|..++|.|.++++++...+ +.++.|.++. ...+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 4789999999 9999999999999999999997644 5555555432 2267778
Q ss_pred cCCC------CCcEEEEEe-CCee-eeecC----CCCHHHHHHHHH
Q 007882 163 YDVQ------GFPTIYFFV-DGQH-KAYNG----GRTKDAIVTWIK 196 (586)
Q Consensus 163 ~~i~------~~Pt~~~~~-~g~~-~~~~g----~~~~~~l~~~i~ 196 (586)
|++. ..|+++++. +|.+ ..+.+ ..+.+.+.+.|+
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 8876 469999996 7833 33322 236666666654
No 220
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.49 E-value=6.7e-07 Score=67.61 Aligned_cols=69 Identities=13% Similarity=0.379 Sum_probs=52.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHH----HHHHcCCCCCcEEEEEeCCeeeeecCCCCHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~ 189 (586)
+..|+++||++|+...+.|.+ .++.+..+|+++++. +++.+++.++|++++. |.. ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~---------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS---------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH---------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence 567999999999999888764 147788888887654 5667999999999874 643 444 5778
Q ss_pred HHHHHHH
Q 007882 190 AIVTWIK 196 (586)
Q Consensus 190 ~l~~~i~ 196 (586)
.|.++++
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 8888763
No 221
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.49 E-value=1.6e-06 Score=76.40 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=59.6
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc---------------------HHHHHHcCCC
Q 007882 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDVQ 166 (586)
Q Consensus 109 ~~~~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~ 166 (586)
+++++||+||++ ||+.|....+.+.++++++++. ++.++.|+.+.. ..+.+.|++.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 578999999987 6788999999999999999873 477777776432 2566778775
Q ss_pred CC------------cEEEEEe-CC-eeeeecCCCCHHHH
Q 007882 167 GF------------PTIYFFV-DG-QHKAYNGGRTKDAI 191 (586)
Q Consensus 167 ~~------------Pt~~~~~-~g-~~~~~~g~~~~~~l 191 (586)
.. |++++++ +| ....|.|....+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~ 145 (154)
T PRK09437 107 GEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHH 145 (154)
T ss_pred cccccccccccCcceEEEEECCCCEEEEEEcCCCcchhH
Confidence 43 6777885 88 44577776554443
No 222
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.46 E-value=3.8e-07 Score=92.98 Aligned_cols=103 Identities=25% Similarity=0.407 Sum_probs=78.5
Q ss_pred EEEeCc-chhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCCcCc
Q 007882 436 KIVVGN-NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFP 507 (586)
Q Consensus 436 ~~l~~~-~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~------~~~~i~~~P 507 (586)
+.++.. ..++.+.+ ++++|+|+|||+||-.||.+.+..-.-.+......+++..+.|.+.|+. .++++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 455554 66666533 3359999999999999999998876433322333469999999998875 579999999
Q ss_pred EEEEEe-CCCcccCccccccccCHHHHHHHHHhcC
Q 007882 508 TILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 508 t~~~~~-~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
++++|+ +|++. + ...|..+.+.+.+++++..
T Consensus 537 ~~~ff~~~g~e~--~-~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEP--E-ILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcC--c-CCcceecHHHHHHHHHHhc
Confidence 999997 55553 2 4889999999999998753
No 223
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.44 E-value=8.6e-07 Score=78.12 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=61.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc----------c---cccCCC--CcCcEEEEE-eCCCcc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------E---HHRAKS--DGFPTILFF-PAGNKS 518 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~----------~---~~~~~i--~~~Pt~~~~-~~g~~~ 518 (586)
+|+||++||++|++..|.++++++++. -.+..+.+|...+ . ...|++ .++|+.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999974 2344455553310 0 124663 699999999 455553
Q ss_pred cCccccccccCHHHHHHHHHhcCCC
Q 007882 519 FDPINVDVDRTVVALYKFLKKNASI 543 (586)
Q Consensus 519 ~~~~~~~g~~~~~~l~~~i~~~~~~ 543 (586)
. ..+.|..+.++|.+.|.+.+..
T Consensus 151 ~--~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 L--PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred E--EEEECCCCHHHHHHHHHHHHhh
Confidence 1 1578999999998888876654
No 224
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.44 E-value=1.3e-06 Score=75.81 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=54.2
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-----------------------HHHHHHcC
Q 007882 109 NNKFVMVEFYAPW-CGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------------------NELAHEYD 164 (586)
Q Consensus 109 ~~~~~lv~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~ 164 (586)
.+++++|+||++| |++|+.++|.|.++++++. ++.++.|+.+.. ..+++.|+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence 5789999999999 6999999999999999874 377777776421 35666777
Q ss_pred CCC------CcEEEEEe-CCee-eeecC
Q 007882 165 VQG------FPTIYFFV-DGQH-KAYNG 184 (586)
Q Consensus 165 i~~------~Pt~~~~~-~g~~-~~~~g 184 (586)
+.. .|+++++. +|++ ..+.|
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 753 68888886 7843 44443
No 225
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.43 E-value=1.1e-07 Score=84.44 Aligned_cols=100 Identities=23% Similarity=0.379 Sum_probs=87.2
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--ccCCCCcCcEEEE
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 511 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~~~~i~~~Pt~~~ 511 (586)
.++.++..++...+ ...+++.|+||||+.|+...|.|+..+.--.+ ..+.++.+|...|.. -+|-+...|||+=
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEEE
Confidence 57889999999976 55799999999999999999999999876544 578889999888774 6889999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 512 FPAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 512 ~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
.++|.-. +|.|.|+..+++.|+...-
T Consensus 101 vkDGeFr----rysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 101 VKDGEFR----RYSGARDKNDFISFEEHRE 126 (248)
T ss_pred eeccccc----cccCcccchhHHHHHHhhh
Confidence 9999886 8999999999999997643
No 226
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.43 E-value=2.7e-07 Score=71.34 Aligned_cols=64 Identities=27% Similarity=0.572 Sum_probs=49.1
Q ss_pred hccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCcccc-ccCCCCcCcEEEEEe
Q 007882 448 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFP 513 (586)
Q Consensus 448 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~i~~~~id~~~~~~-~~~~i~~~Pt~~~~~ 513 (586)
...+++++|+|+++||++|+.+...+ .++.+.+.. +++++.+|.+.... ..+...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 45789999999999999999999887 445553443 59999999876654 223336799999985
No 227
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.41 E-value=2.6e-06 Score=76.20 Aligned_cols=115 Identities=11% Similarity=0.173 Sum_probs=73.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC--------c---HHHHH-HcCCCCCcEEEEEe-
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--------E---NELAH-EYDVQGFPTIYFFV- 175 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~~i~~~Pt~~~~~- 175 (586)
.|+++||.|||+||++|+ .+|.|+++++++++ .++.++++.|.. . ..+|+ ++++ .+|.+-=+.
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~--~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~~k~dv 99 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD--QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMFSKIEV 99 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh--CCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeEEEEcc
Confidence 589999999999999997 58999999999987 359999998842 1 24554 5665 356443332
Q ss_pred CCeeeeecCCCCHHHHHHHHHHhcCCCcc------------------ccc-chhHHHHhcccCCeEEEEEecCCCCcch
Q 007882 176 DGQHKAYNGGRTKDAIVTWIKKKIGPGIY------------------NIT-TLDEAERVLTSETKVVLGYLNSLVGSES 235 (586)
Q Consensus 176 ~g~~~~~~g~~~~~~l~~~i~~~~~~~~~------------------~i~-~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 235 (586)
+|. ...-+-+|+....+.... ... =.-.+.+|+-..+..++..|.....+..
T Consensus 100 nG~--------~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~ 170 (183)
T PRK10606 100 NGE--------GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPED 170 (183)
T ss_pred CCC--------CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCH
Confidence 442 233456677665531100 000 0134667777777777777776655543
No 228
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.40 E-value=1.2e-06 Score=64.21 Aligned_cols=60 Identities=43% Similarity=0.798 Sum_probs=50.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHH---HcCCCCCcEEEEEeCC
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAH---EYDVQGFPTIYFFVDG 177 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g 177 (586)
++.||++||++|+...+.+.++ .... .++.+..++++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3322 369999999998876655 7899999999999876
No 229
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.39 E-value=4.5e-06 Score=75.17 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=64.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC-------------------------cHHHHHH
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------------------------ENELAHE 162 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 162 (586)
.|++++|+|| ++||+.|..+++.|.++++++... ++.++.|..+. +..+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5789999999 999999999999999999999763 35566665432 2367888
Q ss_pred cCC----CCC--cEEEEEe-CCee-eee----cCCCCHHHHHHHHHHh
Q 007882 163 YDV----QGF--PTIYFFV-DGQH-KAY----NGGRTKDAIVTWIKKK 198 (586)
Q Consensus 163 ~~i----~~~--Pt~~~~~-~g~~-~~~----~g~~~~~~l~~~i~~~ 198 (586)
|++ .++ |++++++ +|++ ..+ ...++.+.+.+.+...
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 888 356 9999996 7733 222 2235777777777543
No 230
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.38 E-value=2.9e-06 Score=77.94 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=64.9
Q ss_pred CCCeEEE-EEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---------------------------cHHHH
Q 007882 109 NNKFVMV-EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELA 160 (586)
Q Consensus 109 ~~~~~lv-~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~ 160 (586)
.+++++| +||++||+.|..+++.|.+++++++.. ++.++.|.++. +..++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 4666555 689999999999999999999999874 35566665542 23667
Q ss_pred HHcCCC------CCcEEEEEe-CCeee-ee----cCCCCHHHHHHHHHHhc
Q 007882 161 HEYDVQ------GFPTIYFFV-DGQHK-AY----NGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 161 ~~~~i~------~~Pt~~~~~-~g~~~-~~----~g~~~~~~l~~~i~~~~ 199 (586)
+.||+. .+|+++++. +|++. .. .++++.+.+.+.++...
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 778874 589999996 77332 22 35678888888887653
No 231
>smart00594 UAS UAS domain.
Probab=98.36 E-value=2.5e-06 Score=71.50 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=68.9
Q ss_pred cchhHHh---hccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEE
Q 007882 441 NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTIL 510 (586)
Q Consensus 441 ~~f~~~v---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~i~~~~id~~~~~~----~~~~i~~~Pt~~ 510 (586)
.+|++.+ ...+|.++|+|+++||++|+.+.... .++.+.+.. ++++..+|.+..+. ..++++++|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 3555554 34578999999999999999988654 344455543 58888888887654 578999999999
Q ss_pred EE-eCCC-c-ccCccccccccCHHHHHHHH
Q 007882 511 FF-PAGN-K-SFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 511 ~~-~~g~-~-~~~~~~~~g~~~~~~l~~~i 537 (586)
++ +.|. . ..-..++.|..+.++|+.+|
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99 4441 1 10123677999999999876
No 232
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.36 E-value=1.1e-06 Score=74.42 Aligned_cols=68 Identities=19% Similarity=0.381 Sum_probs=51.8
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-------cccc----------------------cc
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-------TNEH----------------------HR 500 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~-------~~~~----------------------~~ 500 (586)
.+++++|+||++||++|+...|.++++.++++. .++.++.++.. .... ..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 468999999999999999999999999999986 35666666531 1000 12
Q ss_pred CCCCcCcEEEEEe-CCCcc
Q 007882 501 AKSDGFPTILFFP-AGNKS 518 (586)
Q Consensus 501 ~~i~~~Pt~~~~~-~g~~~ 518 (586)
|++..+|+.+++. +|+.+
T Consensus 101 ~~v~~~P~~~vid~~G~v~ 119 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVR 119 (126)
T ss_pred hCCCcCCeEEEECCCCcEE
Confidence 6788899999994 56554
No 233
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.35 E-value=1.7e-06 Score=74.99 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=38.8
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhhcCC-CceEEEEEeCC
Q 007882 109 NNKFVMVEFYAPWCGH-CQALAPEYAAAATELKSAN-ESVVLAKVDAT 154 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~-C~~~~p~~~~~~~~~~~~~-~~v~~~~vd~~ 154 (586)
.+++++|.||++||++ |....+.+.++++++++.+ .++.++.|.++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999999997743 34777777654
No 234
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.33 E-value=4.7e-06 Score=72.90 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=53.1
Q ss_pred CeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---------------------c--HHHHHHcCCC
Q 007882 111 KFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------E--NELAHEYDVQ 166 (586)
Q Consensus 111 ~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~--~~l~~~~~i~ 166 (586)
++++|.|| ++||+.|....|.+.++++++.+. ++.++.|+.+. . ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 78888887 999999999999999999999763 46677776542 2 3566777776
Q ss_pred C----C--cEEEEEe-CC-eeeeecCC
Q 007882 167 G----F--PTIYFFV-DG-QHKAYNGG 185 (586)
Q Consensus 167 ~----~--Pt~~~~~-~g-~~~~~~g~ 185 (586)
. . |++++++ +| ....+.|.
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecC
Confidence 3 2 3778885 77 33455553
No 235
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.32 E-value=2.8e-05 Score=62.31 Aligned_cols=106 Identities=30% Similarity=0.524 Sum_probs=80.8
Q ss_pred CCeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC-----CcHHHHHHcCC--
Q 007882 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----EENELAHEYDV-- 165 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i-- 165 (586)
+..+.|+.-+|++++.+.+.+||.|=.. -|--.-+..|.+++.+......++.++.|-+. ++.+|+++|+|
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 4678999999999999999999999644 34445567899999444443457999999765 35799999999
Q ss_pred CCCcEEEEEeCC--eeeee--cCCCCHHHHHHHHHHhcC
Q 007882 166 QGFPTIYFFVDG--QHKAY--NGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 166 ~~~Pt~~~~~~g--~~~~~--~g~~~~~~l~~~i~~~~~ 200 (586)
..+|.+++|..| .++.| .|..+.+.|.+|+....+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 579999999855 77888 899999999999998764
No 236
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.29 E-value=4.6e-06 Score=72.09 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc----------------------HHHHHHcCC
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------NELAHEYDV 165 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~l~~~~~i 165 (586)
.+++++|+|| ++||++|...+|.+.+++++++.. ++.++.|..+.. ..+.+.|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 5889999999 789999999999999999999653 466777765432 255666776
Q ss_pred CCCc---------EEEEEe-CC-eeeeecCCC
Q 007882 166 QGFP---------TIYFFV-DG-QHKAYNGGR 186 (586)
Q Consensus 166 ~~~P---------t~~~~~-~g-~~~~~~g~~ 186 (586)
...| ++++++ +| ....+.|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 6555 677776 56 445666644
No 237
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.29 E-value=3.3e-06 Score=79.92 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=80.7
Q ss_pred CCCeEEEe-CcchhHHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-ccccCCCCcCc
Q 007882 432 DGDVKIVV-GNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRAKSDGFP 507 (586)
Q Consensus 432 ~~~v~~l~-~~~f~~~v~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~-~~~~~~i~~~P 507 (586)
-+.+..|+ ++.|.+.|.... ..|||+||.+.++.|..+...|..||.++.. +.|++|..+.. ..+.|.+..+|
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LP 200 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLP 200 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-S
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCC
Confidence 36788886 478888874433 4699999999999999999999999999876 88999887764 35789999999
Q ss_pred EEEEEeCCCcccCccccc---c-ccCHHHHHHHHHhcCCCCcc
Q 007882 508 TILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPFK 546 (586)
Q Consensus 508 t~~~~~~g~~~~~~~~~~---g-~~~~~~l~~~i~~~~~~~~~ 546 (586)
|+++|++|..+.+.+.+. | ..+...|..||.+++-.+-+
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence 999999998765444443 2 55788999999998876543
No 238
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.28 E-value=3.7e-06 Score=76.47 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=54.9
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC--------------------CccccccCCCCcCcEE
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG--------------------TTNEHHRAKSDGFPTI 509 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~--------------------~~~~~~~~~i~~~Pt~ 509 (586)
.+++++|+||++||++|+...|.+.++.+... .++.++..|. +......|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 57899999999999999999999999887642 2455554221 0011245788999998
Q ss_pred EEEe-CCCcccCccccccc-cCHHHHHHHHH
Q 007882 510 LFFP-AGNKSFDPINVDVD-RTVVALYKFLK 538 (586)
Q Consensus 510 ~~~~-~g~~~~~~~~~~g~-~~~~~l~~~i~ 538 (586)
+++. +|+.+ +.|. .+.+.+.+.++
T Consensus 151 ~lID~~G~I~-----~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 151 VLLDQDGKIR-----AKGLTNTREHLESLLE 176 (189)
T ss_pred EEECCCCeEE-----EccCCCCHHHHHHHHH
Confidence 8874 56543 3442 34455555554
No 239
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.28 E-value=3.5e-06 Score=64.23 Aligned_cols=69 Identities=20% Similarity=0.386 Sum_probs=47.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHH-----cCCCCCcEEEEEeCCeeeeecCCCCH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE-----YDVQGFPTIYFFVDGQHKAYNGGRTK 188 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (586)
++.||++||++|+...+.|.++. +.+-.+|.+++...... +++.++|++ ++.+|.... ..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCH
Confidence 67899999999999999886542 44556777776655544 389999997 567774322 3344
Q ss_pred HHHHHHH
Q 007882 189 DAIVTWI 195 (586)
Q Consensus 189 ~~l~~~i 195 (586)
..+.+.+
T Consensus 69 ~~~~~~l 75 (77)
T TIGR02200 69 AQVKAKL 75 (77)
T ss_pred HHHHHHh
Confidence 4554443
No 240
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.2e-06 Score=76.80 Aligned_cols=87 Identities=20% Similarity=0.330 Sum_probs=69.3
Q ss_pred CCCeEEE-eCcchhHHhh-ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCC----
Q 007882 432 DGDVKIV-VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKS---- 503 (586)
Q Consensus 432 ~~~v~~l-~~~~f~~~v~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i---- 503 (586)
.+.++.. +.+.+++... +....|+|.|+|.|.+.|..+.|.|.+++.++.. +.+.|+++|+..-. ..+|+|
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccCc
Confidence 3457777 5566666653 3345799999999999999999999999999976 57999999988643 456655
Q ss_pred --CcCcEEEEEeCCCccc
Q 007882 504 --DGFPTILFFPAGNKSF 519 (586)
Q Consensus 504 --~~~Pt~~~~~~g~~~~ 519 (586)
+..||+++|.+|+++.
T Consensus 202 ~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVS 219 (265)
T ss_pred ccccCCeEEEEccchhhh
Confidence 4899999999999874
No 241
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.28 E-value=1.6e-05 Score=85.34 Aligned_cols=182 Identities=15% Similarity=0.115 Sum_probs=122.5
Q ss_pred ccEEEEEEecc--chhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCC-CCCcccCCCC
Q 007882 324 KNQLLLFAVSN--DSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKHILDGE 400 (586)
Q Consensus 324 ~~~l~~~~~~~--~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~-~~~~y~~~~~ 400 (586)
+..+.+|.+.. .|.+..+.+++++ ...+++.+...|... ...+...||+.. .|.+.+.+.+ ...-..|-+-
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~---~~~~~~~~~v~~--~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE---EPESETLPKITK--LPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc---chhhHhhcCCCc--CCEEEEEeCCCcccceEEEec
Confidence 44566666542 5777888888888 566788888777654 235567788763 6888887433 2223455566
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccCCcE-EEEEeCCCChhhhhhhHHHHHHHHH
Q 007882 401 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKH 479 (586)
Q Consensus 401 ~t~e~i~~fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~ 479 (586)
..-..+..||..+++-.-. -..++.+..+. +..=++++ +-.|.+++|++|..+...+++++..
T Consensus 441 P~G~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 441 PSGHELNSFILALYNAAGP---------------GQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL 504 (555)
T ss_pred CccHhHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 6677888888888763211 12333333333 33334565 5567899999999999999999988
Q ss_pred hcCCCcEEEEEEeCCc--cccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHH
Q 007882 480 LRGVDSIVIAKMDGTT--NEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 537 (586)
Q Consensus 480 ~~~~~~i~~~~id~~~--~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i 537 (586)
..+ +..-.+|... ....+|+|.++|++++ +|+. .+.|..+.++|+++|
T Consensus 505 ~~~---i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~-----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 505 NPN---VEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ-----VYFGKKTIEEMLELI 554 (555)
T ss_pred CCC---ceEEEEECcccHHHHHhCCceecCEEEE--CCEE-----EEeeCCCHHHHHHhh
Confidence 543 5555555554 4457999999999876 5554 467888999999886
No 242
>PRK15000 peroxidase; Provisional
Probab=98.27 E-value=8e-06 Score=74.69 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc----------------------------HHH
Q 007882 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (586)
Q Consensus 109 ~~~~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l 159 (586)
++++++|+||+. ||+.|..+++.|.+++++++.. ++.++.|.++.. ..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 478999999995 9999999999999999999874 466666665521 256
Q ss_pred HHHcCCC------CCcEEEEEe-CCee-eeecC----CCCHHHHHHHHHH
Q 007882 160 AHEYDVQ------GFPTIYFFV-DGQH-KAYNG----GRTKDAIVTWIKK 197 (586)
Q Consensus 160 ~~~~~i~------~~Pt~~~~~-~g~~-~~~~g----~~~~~~l~~~i~~ 197 (586)
++.|++. .+|+++++. +|.+ ..+.| .++.+.+.+.++.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 6678876 689999997 7833 33333 3567777777754
No 243
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.24 E-value=5.4e-06 Score=77.07 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=64.4
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc------cc---c-----cc----CC---------
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------NE---H-----HR----AK--------- 502 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~------~~---~-----~~----~~--------- 502 (586)
.++++||.||++||++|+...|.|.++.+++++. ++.++-|+++. .. . .+ |.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 4689999999999999999999999999999763 46666666421 00 0 11 10
Q ss_pred ---------------------CCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 503 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 503 ---------------------i~~~Pt~~~~-~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
+...|+.+++ ++|+.+. +|.|..+.++|.+.|++.+
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~---~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE---RYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHh
Confidence 1224777777 6677664 7889889999999888765
No 244
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.22 E-value=1.2e-05 Score=74.14 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=64.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC-----------CcHHHHHHcCCCCCcEEEEEe-CC
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----------EENELAHEYDVQGFPTIYFFV-DG 177 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~Pt~~~~~-~g 177 (586)
++..|+.||.+.|+.|+.+.|.+..+++++. +.+..|+.| .+..++++++|..+|+++++. ++
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 6789999999999999999999999999983 445555544 357899999999999999997 34
Q ss_pred -ee-eeecCCCCHHHHHHH
Q 007882 178 -QH-KAYNGGRTKDAIVTW 194 (586)
Q Consensus 178 -~~-~~~~g~~~~~~l~~~ 194 (586)
.. ..-.|..+.+.|.+-
T Consensus 195 ~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CeEEEEeeecCCHHHHHHh
Confidence 33 355688888888754
No 245
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.21 E-value=3.7e-06 Score=73.30 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=53.8
Q ss_pred EeCcchhHHhhccCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCC-cEEEEEEeCCccc------------------
Q 007882 438 VVGNNFDEIVLDESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNE------------------ 497 (586)
Q Consensus 438 l~~~~f~~~v~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~-~i~~~~id~~~~~------------------ 497 (586)
.+++.+.-.- -.+++++|.||++ ||++|+...|.+.++.+.++... .+..+..+.+...
T Consensus 16 ~~g~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~ 94 (146)
T PF08534_consen 16 LDGKPVSLSD-FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD 94 (146)
T ss_dssp TTSEEEEGGG-GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred CCCCEecHHH-hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence 3444444322 3578999999999 99999999999999998877642 3444443333210
Q ss_pred ---cccCCCC---------cCcEEEEEe-CCCcc
Q 007882 498 ---HHRAKSD---------GFPTILFFP-AGNKS 518 (586)
Q Consensus 498 ---~~~~~i~---------~~Pt~~~~~-~g~~~ 518 (586)
...+++. .+|+++++. +|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEE
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEEE
Confidence 1246777 999988885 45544
No 246
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.21 E-value=5.3e-06 Score=69.64 Aligned_cols=75 Identities=25% Similarity=0.484 Sum_probs=49.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHc---CCCCCcEEEEEe-CCeeeeecCC
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEY---DVQGFPTIYFFV-DGQHKAYNGG 185 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~-~g~~~~~~g~ 185 (586)
.+..++.|..+|||.|....|.+.++++.... +.+-.+-.+++.++..+| |.+++|++++++ +|.....-|+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 46788889999999999999999999987533 555555555777776655 688999999996 5677766676
Q ss_pred CCH
Q 007882 186 RTK 188 (586)
Q Consensus 186 ~~~ 188 (586)
+..
T Consensus 117 rP~ 119 (129)
T PF14595_consen 117 RPK 119 (129)
T ss_dssp S-H
T ss_pred CCH
Confidence 654
No 247
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.20 E-value=5.4e-06 Score=75.79 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=37.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 493 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~ 493 (586)
.++++||.|||+||++|+..+|.+.++.+++.+. ++.++.+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecc
Confidence 4789999999999999999999999999999763 477777764
No 248
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.16 E-value=1.9e-05 Score=72.62 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=60.4
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---------------------------cHHHHHHcC
Q 007882 112 FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELAHEYD 164 (586)
Q Consensus 112 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~ 164 (586)
.+|+.||++||+.|..+++.|.+++++++.. ++.++.|+++. +..+++.||
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 4566899999999999999999999999874 46666666553 236677888
Q ss_pred CC----C----CcEEEEEe-CCee-eeecC----CCCHHHHHHHHHHh
Q 007882 165 VQ----G----FPTIYFFV-DGQH-KAYNG----GRTKDAIVTWIKKK 198 (586)
Q Consensus 165 i~----~----~Pt~~~~~-~g~~-~~~~g----~~~~~~l~~~i~~~ 198 (586)
+. + .|++++++ +|++ ..+.+ .++.+.+.+.|..+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 75 2 35688886 7733 33333 45667777777654
No 249
>PRK13189 peroxiredoxin; Provisional
Probab=98.13 E-value=2.3e-05 Score=72.98 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=62.5
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---------------------------cHHHH
Q 007882 109 NNKF-VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELA 160 (586)
Q Consensus 109 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~ 160 (586)
.+++ +|++||++||+.|..+++.|.+++++++..+ +.++.|.++. +..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 4664 5568899999999999999999999998743 5566665542 12567
Q ss_pred HHcCCC-------CCcEEEEEe-CCee-eeec----CCCCHHHHHHHHHHh
Q 007882 161 HEYDVQ-------GFPTIYFFV-DGQH-KAYN----GGRTKDAIVTWIKKK 198 (586)
Q Consensus 161 ~~~~i~-------~~Pt~~~~~-~g~~-~~~~----g~~~~~~l~~~i~~~ 198 (586)
+.||+. .+|++++++ +|.+ ..+. ++++.+.+.+.|+..
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 778865 478999997 7743 2222 455677777777654
No 250
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.12 E-value=1.7e-05 Score=75.13 Aligned_cols=101 Identities=18% Similarity=0.370 Sum_probs=73.3
Q ss_pred CCeEEeC-hhhHHHHHhC---CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCC
Q 007882 93 KDVVVLK-ERNFSDVIEN---NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGF 168 (586)
Q Consensus 93 ~~v~~l~-~~~~~~~~~~---~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 168 (586)
+.|..++ +..|-+.+.+ +..|||.||.+.++.|..+...|..||.+|.. +.|+.|.....+ ++..|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC-TTTTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC-cccCCcccCC
Confidence 4688886 5788888743 45799999999999999999999999999977 999999876654 7788999999
Q ss_pred cEEEEEeCC-eeeeecC-------CCCHHHHHHHHHHh
Q 007882 169 PTIYFFVDG-QHKAYNG-------GRTKDAIVTWIKKK 198 (586)
Q Consensus 169 Pt~~~~~~g-~~~~~~g-------~~~~~~l~~~i~~~ 198 (586)
||+++|++| ....+.| ..+...|..|+.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999 3445543 23445666666654
No 251
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.10 E-value=2.7e-05 Score=73.50 Aligned_cols=88 Identities=13% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC----------------------------cHHH
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------------------------ENEL 159 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l 159 (586)
+++++++.|| ++||++|..+++.|.++++++.+.+ +.++.|.++. +..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 4567777777 8999999999999999999998744 5555555432 1367
Q ss_pred HHHcCCC-----CCcEEEEEe-CCee-eee----cCCCCHHHHHHHHHHh
Q 007882 160 AHEYDVQ-----GFPTIYFFV-DGQH-KAY----NGGRTKDAIVTWIKKK 198 (586)
Q Consensus 160 ~~~~~i~-----~~Pt~~~~~-~g~~-~~~----~g~~~~~~l~~~i~~~ 198 (586)
++.||+. ..|++++++ +|++ ..+ ..+++.+.+.+.|...
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 7888885 589999997 7833 222 3446777777777544
No 252
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.09 E-value=1.2e-05 Score=71.42 Aligned_cols=91 Identities=9% Similarity=0.054 Sum_probs=59.1
Q ss_pred chhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHH-hcCC--CcEEEEEEeCC------------------------
Q 007882 442 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGV--DSIVIAKMDGT------------------------ 494 (586)
Q Consensus 442 ~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~-~~~~--~~i~~~~id~~------------------------ 494 (586)
.+...-+ .++.++|.|||+||++|+..+|.+.+++.+ +.-. .....+++|..
T Consensus 51 ~~~~~~l-~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v 129 (184)
T TIGR01626 51 PWGSAEL-AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQV 129 (184)
T ss_pred eccHHHc-CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceE
Confidence 3444333 389999999999999999999999999653 2110 01133334321
Q ss_pred -----ccccccCCCCcCcEE-EEE-eCCCcccCccccccccCHHHHHHH
Q 007882 495 -----TNEHHRAKSDGFPTI-LFF-PAGNKSFDPINVDVDRTVVALYKF 536 (586)
Q Consensus 495 -----~~~~~~~~i~~~Pt~-~~~-~~g~~~~~~~~~~g~~~~~~l~~~ 536 (586)
......|++.++|+. +++ ++|+.+. ++.|..+.+++.+.
T Consensus 130 llD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 130 VLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKF---VKEGALSDSDIQTV 175 (184)
T ss_pred EECCcchHHHhcCCCCCCceEEEECCCCcEEE---EEeCCCCHHHHHHH
Confidence 111135788899877 566 5666654 77888877776553
No 253
>PLN02412 probable glutathione peroxidase
Probab=98.09 E-value=1e-05 Score=72.00 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=63.2
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc------cc---c-----cc----CC---------
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------NE---H-----HR----AK--------- 502 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~------~~---~-----~~----~~--------- 502 (586)
.++.+||.||++||++|+...|.+.++.+++++. ++.++-|+++. .. . .+ |.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 4689999999999999999999999999999864 47777766421 01 0 11 10
Q ss_pred ---------------------CCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 503 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 503 ---------------------i~~~Pt~~~~-~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
+...|+.+++ ++|+.+. ++.|..+.+.|.+.|...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~---~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ---RYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE---EECCCCCHHHHHHHHHHHH
Confidence 2334777777 5666654 6778888888888887654
No 254
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.08 E-value=3.5e-05 Score=71.19 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=63.4
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc---------------------------HHHH
Q 007882 109 NNKF-VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------------NELA 160 (586)
Q Consensus 109 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~l~ 160 (586)
.|++ +|+.||++||+.|..+++.|.++++++...+ +.++.|.++.. ..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 3555 4789999999999999999999999998743 66666666531 2567
Q ss_pred HHcCCC-------CCcEEEEEe-CCee-ee--ec--CCCCHHHHHHHHHHh
Q 007882 161 HEYDVQ-------GFPTIYFFV-DGQH-KA--YN--GGRTKDAIVTWIKKK 198 (586)
Q Consensus 161 ~~~~i~-------~~Pt~~~~~-~g~~-~~--~~--g~~~~~~l~~~i~~~ 198 (586)
+.||+. .+|+++++. +|++ .. |. ..++.+.+.+.+...
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 778863 589999997 7833 22 22 235677777777653
No 255
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.06 E-value=5e-05 Score=57.48 Aligned_cols=72 Identities=22% Similarity=0.493 Sum_probs=53.8
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecC-CCCHHHHHHH
Q 007882 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNG-GRTKDAIVTW 194 (586)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g-~~~~~~l~~~ 194 (586)
.+++++|+.|......+.+++..+ ++.+-.+|..+.+++ .+|||.++|++++ ||+ ..+.| ..+.+.|.+|
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-----~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-----GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK-VVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-----TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE-EEEESS--HHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-----CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHHH
Confidence 346888999999999999988876 255566677666666 9999999999943 675 45778 6777888888
Q ss_pred HH
Q 007882 195 IK 196 (586)
Q Consensus 195 i~ 196 (586)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 256
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.05 E-value=1.1e-05 Score=70.78 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=35.8
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 493 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~ 493 (586)
.+++++|.||++||+ |+...|.++++.+++++. ++.++.+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEecc
Confidence 378999999999999 999999999999999753 577777654
No 257
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.05 E-value=4.4e-05 Score=65.79 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=56.7
Q ss_pred EEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhH-HH--HHHHHHhhcCCCceEEEEEeCCCcHHHHHHc--------C
Q 007882 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAP-EY--AAAATELKSANESVVLAKVDATEENELAHEY--------D 164 (586)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~ 164 (586)
...+++.|+.+-+++|+++|.++++||..|+.+.. .| .++++.++. .+.-+.||.++.+++...| +
T Consensus 23 ~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDree~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 23 QPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDREERPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEeccccCccHHHHHHHHHHHhcC
Confidence 44556788888889999999999999999998875 33 345666666 7889999999999988877 7
Q ss_pred CCCCcEEEEEe-CCeee
Q 007882 165 VQGFPTIYFFV-DGQHK 180 (586)
Q Consensus 165 i~~~Pt~~~~~-~g~~~ 180 (586)
..++|+.+|.. +|.++
T Consensus 100 ~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp ---SSEEEEE-TTS-EE
T ss_pred CCCCCceEEECCCCCee
Confidence 88999999996 77543
No 258
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.03 E-value=1.6e-05 Score=64.95 Aligned_cols=73 Identities=23% Similarity=0.460 Sum_probs=47.4
Q ss_pred chhHHhh---ccCCcEEEEEeCC-------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--------c---cc
Q 007882 442 NFDEIVL---DESKDVLLEIYAP-------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H---HR 500 (586)
Q Consensus 442 ~f~~~v~---~~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--------~---~~ 500 (586)
+|.+.+. .++++++|+|+++ ||+.|....|.+++....... +..++.+.+.... . +.
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 4555553 3457899999875 999999999999999888554 4666666654322 1 36
Q ss_pred CCCCcCcEEEEEeCCC
Q 007882 501 AKSDGFPTILFFPAGN 516 (586)
Q Consensus 501 ~~i~~~Pt~~~~~~g~ 516 (586)
+++.++||++-+..++
T Consensus 85 ~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 85 LKLKGIPTLIRWETGE 100 (119)
T ss_dssp C---SSSEEEECTSS-
T ss_pred eeeeecceEEEECCCC
Confidence 9999999999997763
No 259
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.02 E-value=1.1e-05 Score=62.66 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=44.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-----HHHHHcCCCCCcEEEEEeCCe
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~ 178 (586)
++.|+++||++|+...+.|.++. ... .+.++.||.+.+. .+.+.+++.++|++ |.+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 47899999999999999998876 222 4778888876543 25666799999997 34664
No 260
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.02 E-value=3.6e-05 Score=62.90 Aligned_cols=74 Identities=20% Similarity=0.466 Sum_probs=49.4
Q ss_pred hhHHHHH----hCCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-------HHHH-
Q 007882 101 RNFSDVI----ENNKFVMVEFYAP-------WCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------ELAH- 161 (586)
Q Consensus 101 ~~~~~~~----~~~~~~lv~f~a~-------wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~- 161 (586)
++|.+.+ .++++++|.|+++ |||.|+...|.+.++...... +..++.|.....+ .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCceEc
Confidence 4455555 3468899999864 999999999999998887554 6777777664322 2333
Q ss_pred -HcCCCCCcEEEEEeCC
Q 007882 162 -EYDVQGFPTIYFFVDG 177 (586)
Q Consensus 162 -~~~i~~~Pt~~~~~~g 177 (586)
++++.++||++-+..+
T Consensus 83 p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETG 99 (119)
T ss_dssp -CC---SSSEEEECTSS
T ss_pred ceeeeeecceEEEECCC
Confidence 4899999999998766
No 261
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.02 E-value=3.5e-05 Score=71.22 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCeEE-EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc---------------------------HHHH
Q 007882 109 NNKFVM-VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------------NELA 160 (586)
Q Consensus 109 ~~~~~l-v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~l~ 160 (586)
.|++++ +.||++||+.|..+++.|.+++.++...+ +.++.|.++.. ..++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 456555 58899999999999999999999998744 66666665422 2566
Q ss_pred HHcCCC-------CCcEEEEEe-CCee-eee----cCCCCHHHHHHHHHHh
Q 007882 161 HEYDVQ-------GFPTIYFFV-DGQH-KAY----NGGRTKDAIVTWIKKK 198 (586)
Q Consensus 161 ~~~~i~-------~~Pt~~~~~-~g~~-~~~----~g~~~~~~l~~~i~~~ 198 (586)
+.||+. ..|++++++ +|++ ..+ ..+++.+.+.+.|+..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677763 478999996 7733 222 1345778888877654
No 262
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.99 E-value=0.0001 Score=60.64 Aligned_cols=91 Identities=8% Similarity=0.166 Sum_probs=69.1
Q ss_pred HHHhCCCeEEEEEECC----CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc--HHHHHHcCCCCCcEEEEEe--C
Q 007882 105 DVIENNKFVMVEFYAP----WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--NELAHEYDVQGFPTIYFFV--D 176 (586)
Q Consensus 105 ~~~~~~~~~lv~f~a~----wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~ 176 (586)
..-++.|+++|++|++ ||..|+..... .++.+-++. ++.+...|.... ..++..++++++|++.++. +
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 3345789999999999 99999775421 223333433 688888888654 5789999999999999993 3
Q ss_pred C---eeeeecCCCCHHHHHHHHHHhc
Q 007882 177 G---QHKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 177 g---~~~~~~g~~~~~~l~~~i~~~~ 199 (586)
+ ...+..|..+.+.+...++..+
T Consensus 88 ~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 88 NRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred CceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 3 3568899999999999888765
No 263
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.98 E-value=2e-05 Score=65.55 Aligned_cols=66 Identities=27% Similarity=0.601 Sum_probs=54.6
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-c--cccccCC--CCcCcEEEEEeCCCcc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-T--NEHHRAK--SDGFPTILFFPAGNKS 518 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~-~--~~~~~~~--i~~~Pt~~~~~~g~~~ 518 (586)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. . .....+. +..+|+++++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67899999999999999999999999999876 5777777775 2 3345677 8999999988887764
No 264
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.98 E-value=1.6e-05 Score=68.68 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=74.5
Q ss_pred eEEeC-hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 95 VVVLK-ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 95 v~~l~-~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
..++. +..|-+...++.-|++.||-+.-..|+-+-..|+.+|..+-+ ..|+.||....|-|+.+++|..+|++.+
T Consensus 68 y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred EEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 34444 788888888888999999999999999999999999998866 8999999999999999999999999999
Q ss_pred EeCCeeeee
Q 007882 174 FVDGQHKAY 182 (586)
Q Consensus 174 ~~~g~~~~~ 182 (586)
|++|+...|
T Consensus 144 ~k~g~~~D~ 152 (211)
T KOG1672|consen 144 FKNGKTVDY 152 (211)
T ss_pred EEcCEEEEE
Confidence 999955443
No 265
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.97 E-value=3.5e-05 Score=69.03 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=62.9
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc------c-------------------------c
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E-------------------------H 498 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~------~-------------------------~ 498 (586)
.++++||+||++||+.|....+.+.++.+++.. .++.++.+..+.. . .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 578899999999999999999999999999875 3466666655431 0 0
Q ss_pred ccCCCCcCcEEEEEe-CCCcccCcc------ccccccCHHHHHHHHHhcCC
Q 007882 499 HRAKSDGFPTILFFP-AGNKSFDPI------NVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 499 ~~~~i~~~Pt~~~~~-~g~~~~~~~------~~~g~~~~~~l~~~i~~~~~ 542 (586)
..|++...|+++++. +|+.+.... .+.+..+...+.+-|+..+.
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 146788999999995 555432100 00123456777777766554
No 266
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.94 E-value=1.8e-05 Score=59.67 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=47.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCCcCcEEEEEeCCCcccCcccccccc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR 528 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~------~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~ 528 (586)
+..|+++||++|+.+.+.|++. ++.+..+|.+.+.. ..+++.++|++++. |+. +.| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~------~~g-~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI------IVG-F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE------Eee-C
Confidence 5689999999999999888651 35666777665432 34789999999874 322 445 4
Q ss_pred CHHHHHHHH
Q 007882 529 TVVALYKFL 537 (586)
Q Consensus 529 ~~~~l~~~i 537 (586)
+.+.|.++|
T Consensus 65 ~~~~i~~~i 73 (74)
T TIGR02196 65 DPEKLDQLL 73 (74)
T ss_pred CHHHHHHHh
Confidence 678888876
No 267
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=68.30 Aligned_cols=69 Identities=23% Similarity=0.491 Sum_probs=53.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---CcEEEEEEeCCcccc-------------------------ccC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH-------------------------HRA 501 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~i~~~~id~~~~~~-------------------------~~~ 501 (586)
.++.+.++|.|.||++||.+-|.+.++...+... --|+|+.-|-+.... ..|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4689999999999999999999999999988765 246666666554221 147
Q ss_pred CCCcCcEEEEE-eCCCcc
Q 007882 502 KSDGFPTILFF-PAGNKS 518 (586)
Q Consensus 502 ~i~~~Pt~~~~-~~g~~~ 518 (586)
.+.++|++++. ++|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 89999998888 556554
No 268
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.92 E-value=1.2e-05 Score=61.31 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=44.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--ccc-----CCCCcCcEEEEEeCCCcccCccccccc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHR-----AKSDGFPTILFFPAGNKSFDPINVDVD 527 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~-----~~i~~~Pt~~~~~~g~~~~~~~~~~g~ 527 (586)
++.||++||++|+.+++.+.++. +.+-.+|.+.+. ... +++.++|++ ++.+|..+ ..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l-------~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL-------TN 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe-------cC
Confidence 67899999999999999987653 223345554433 223 378899997 46777553 13
Q ss_pred cCHHHHHHHHH
Q 007882 528 RTVVALYKFLK 538 (586)
Q Consensus 528 ~~~~~l~~~i~ 538 (586)
.+..++.+.|.
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 44556665553
No 269
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.92 E-value=0.00011 Score=68.84 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=66.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-----------HHHHHHcCCCCCcEEEEEeCC-
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------NELAHEYDVQGFPTIYFFVDG- 177 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~Pt~~~~~~g- 177 (586)
++..|+.||.+-|+.|+++.|.+..+++++ ++.+..|+.+.. ..+++++||..+|+++++..+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 468999999999999999999999999987 345555554432 568899999999999999733
Q ss_pred -ee-eeecCCCCHHHHHHHHHHhc
Q 007882 178 -QH-KAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 178 -~~-~~~~g~~~~~~l~~~i~~~~ 199 (586)
.. ..-.|..+.+.|.+-|....
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 33 34568899999877665544
No 270
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.91 E-value=5.6e-05 Score=66.33 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=37.1
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 493 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~ 493 (586)
.++++||.||++||++|+..+|.+.++.++++.. .+.++.+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 4678999999999999999999999999999763 577777764
No 271
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.91 E-value=3.6e-05 Score=70.95 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=62.9
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-----------ccccccCCCCcCcEEEEEeCCCccc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----------TNEHHRAKSDGFPTILFFPAGNKSF 519 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~-----------~~~~~~~~i~~~Pt~~~~~~g~~~~ 519 (586)
++.-|++||.+.|+.|+.+.|++..+++++.- .+..+.+|.. ......++|..+|++++...+....
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 56789999999999999999999999999843 5666666632 2223579999999999996554322
Q ss_pred CccccccccCHHHHHHH
Q 007882 520 DPINVDVDRTVVALYKF 536 (586)
Q Consensus 520 ~~~~~~g~~~~~~l~~~ 536 (586)
.++. .|..+.++|.+=
T Consensus 198 ~pv~-~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPVS-QGFMSLDELEDR 213 (215)
T ss_pred EEEe-eecCCHHHHHHh
Confidence 3444 488899888763
No 272
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.85 E-value=3.5e-05 Score=58.35 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=51.6
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCcccccc-ccCHHHHHH
Q 007882 457 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYK 535 (586)
Q Consensus 457 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g-~~~~~~l~~ 535 (586)
.+++++|+.|..+...+++++..+. ..+.+..+ .+.....+|++.++|++++ +|+. .+.| ..+.++|.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~-~~~~~~~~ygv~~vPalvI--ng~~-----~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDI-EDFEEIEKYGVMSVPALVI--NGKV-----VFVGRVPSKEELKE 73 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEET-TTHHHHHHTT-SSSSEEEE--TTEE-----EEESS--HHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEc-cCHHHHHHcCCCCCCEEEE--CCEE-----EEEecCCCHHHHHH
Confidence 3478889999999999999999873 23444443 2223347899999999855 6654 5788 889999999
Q ss_pred HHH
Q 007882 536 FLK 538 (586)
Q Consensus 536 ~i~ 538 (586)
||+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 273
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.84 E-value=4.5e-05 Score=55.44 Aligned_cols=58 Identities=33% Similarity=0.695 Sum_probs=46.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----ccCCCCcCcEEEEEeCC
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAG 515 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-----~~~~i~~~Pt~~~~~~g 515 (586)
++.||++||++|+.+.+.+.++ .... .++.++.++++.... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN--KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC--CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3222 357888888777653 26789999999999877
No 274
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.84 E-value=0.00012 Score=56.60 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=79.0
Q ss_pred CceeecCCCcccccccCC-cccEEEEEEec--cchhhHHHHHHHHHHhccC--ceEEEEEECCCccccccc-ccccCccC
Q 007882 305 PLVTIFTRENAPSVFESP-IKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPV-SEYFGITG 378 (586)
Q Consensus 305 p~v~~lt~~~~~~~~~~~-~~~~l~~~~~~--~~~~~~~~~l~~lA~~~~~--~~~f~~vd~~~~~~~~~~-~~~~gi~~ 378 (586)
|.+.+++.+++....... .-.+++.|... .+..+++..++++|+.+.. ++.|+|+|.+..+..... .+.|||+-
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl 80 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL 80 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc
Confidence 456677777777766543 24667888876 4577899999999999975 599999999987644433 56788876
Q ss_pred CCCceEEEecCC--CCCcccCCC---CCCHHHHHHHHHHHh
Q 007882 379 EAPKVLAYTGND--DAKKHILDG---ELTLDKIKTFGEDFL 414 (586)
Q Consensus 379 ~~~p~~~i~~~~--~~~~y~~~~---~~t~e~i~~fi~~~~ 414 (586)
. .|.+.+++.. .+.-+.+++ ..|.+.++.|+++++
T Consensus 81 ~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 81 F-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred C-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 5 5666666444 445566654 388999999999875
No 275
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.83 E-value=0.00015 Score=56.27 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=54.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH----HHHHHcC--CCCCcEEEEEeCCeeeeecCCC
Q 007882 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYD--VQGFPTIYFFVDGQHKAYNGGR 186 (586)
Q Consensus 113 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~~~~g~~ 186 (586)
-++.|+.+||++|++....|+++..++. ++.+..+|.+.+. ++.+..+ +..+|+++ .+|..+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i---g-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI---G-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE---c--
Confidence 3778999999999999999999987653 4777788877642 4554444 47899975 467432 3
Q ss_pred CHHHHHHHHHHhc
Q 007882 187 TKDAIVTWIKKKI 199 (586)
Q Consensus 187 ~~~~l~~~i~~~~ 199 (586)
..+.|.++++..+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 3467777776654
No 276
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.81 E-value=0.00019 Score=65.86 Aligned_cols=88 Identities=14% Similarity=0.329 Sum_probs=61.9
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc----------------------------HHH
Q 007882 109 NNKFVMVEFYA-PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (586)
Q Consensus 109 ~~~~~lv~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l 159 (586)
.|++++|+||+ +||+.|..+++.|.++++++... ++.++.|+++.. ..+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 47899999995 88999999999999999999874 466666665422 256
Q ss_pred HHHcCCC------CCcEEEEEe-CCee-eeecC----CCCHHHHHHHHHHh
Q 007882 160 AHEYDVQ------GFPTIYFFV-DGQH-KAYNG----GRTKDAIVTWIKKK 198 (586)
Q Consensus 160 ~~~~~i~------~~Pt~~~~~-~g~~-~~~~g----~~~~~~l~~~i~~~ 198 (586)
++.||+. .+|++++++ +|.+ ..+.+ +++.+.+.+.|...
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 7778875 478999997 7733 22222 34555555555433
No 277
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.78 E-value=0.00012 Score=66.24 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=34.1
Q ss_pred cCCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007882 450 ESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 493 (586)
Q Consensus 450 ~~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~ 493 (586)
.++++ ++.+||+||++|+..+|.++++.+++++. ++.++.+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEec
Confidence 35654 55679999999999999999999999763 466777654
No 278
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.77 E-value=0.00024 Score=56.78 Aligned_cols=88 Identities=17% Similarity=0.339 Sum_probs=70.8
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC--
Q 007882 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-- 177 (586)
Q Consensus 100 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-- 177 (586)
.+.++.++...++++|.|+.++|. .....|.++|..+.+ .+.|+.+. +..+.+++++. -|++++|+.+
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~ 76 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEE 76 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC---hHHHHHHcCCC-CCceEEeCCccc
Confidence 344666778889999999999988 467789999998876 58888776 46778888775 4999999764
Q ss_pred eeeeecCCCCHHHHHHHHHH
Q 007882 178 QHKAYNGGRTKDAIVTWIKK 197 (586)
Q Consensus 178 ~~~~~~g~~~~~~l~~~i~~ 197 (586)
....|.|..+.+.|.+||..
T Consensus 77 ~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 77 EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCccCCCCCCHHHHHHHHHh
Confidence 56779999999999999864
No 279
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00011 Score=58.28 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=55.5
Q ss_pred hhHHHHH---hCCCeEEEEEEC--------CCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-------HHHHH
Q 007882 101 RNFSDVI---ENNKFVMVEFYA--------PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------ELAHE 162 (586)
Q Consensus 101 ~~~~~~~---~~~~~~lv~f~a--------~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~~ 162 (586)
+.|++.+ .+++.++|+|++ +|||.|.+..|.+.++.+.... ++.|+.|+..+-+ .+...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCcccCCCCccccC
Confidence 4566655 356779999985 6999999999999998875555 7999999876432 34555
Q ss_pred cCC-CCCcEEEEEeC
Q 007882 163 YDV-QGFPTIYFFVD 176 (586)
Q Consensus 163 ~~i-~~~Pt~~~~~~ 176 (586)
.++ .++||++=+.+
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 666 89999987763
No 280
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.74 E-value=0.00018 Score=53.89 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=44.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHH----cCCCCCcEEEEEeCCeeeeecCCCCHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE----YDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~g~~~~~~g~~~~~ 189 (586)
++.|+++||++|+.....+.+. ++.+..+|.+.+...... .++.++|++++ +|. ..++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHH
Confidence 5779999999999988777651 356666777665544333 36889999865 442 22335566
Q ss_pred HHHHH
Q 007882 190 AIVTW 194 (586)
Q Consensus 190 ~l~~~ 194 (586)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 66654
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.73 E-value=0.00089 Score=71.42 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=115.3
Q ss_pred ccEEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCCCCC
Q 007882 324 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 402 (586)
Q Consensus 324 ~~~l~~~~~~-~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t 402 (586)
+..+.+|.+. +.+.+..+.+++++.-- +++.+...+. . ...|.+.+...+......|-+-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~---------------~-~~~p~~~~~~~~~~~~i~f~g~P~ 82 (517)
T PRK15317 20 PIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSL---------------D-VRKPSFSITRPGEDTGVRFAGIPM 82 (517)
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccC---------------C-CCCCEEEEEcCCccceEEEEecCc
Confidence 3445566654 45677777777777643 5666543221 0 125777776544334455667677
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 007882 403 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR 481 (586)
Q Consensus 403 ~e~i~~fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 481 (586)
-..+..|+..+++=. +.-..|+.+..+ .+..=+++ -+..|++++|++|..+...+++++...+
T Consensus 83 g~Ef~s~i~~i~~~~---------------~~~~~l~~~~~~-~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~ 146 (517)
T PRK15317 83 GHEFTSLVLALLQVG---------------GHPPKLDQEVIE-QIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP 146 (517)
T ss_pred cHHHHHHHHHHHHhc---------------CCCCCCCHHHHH-HHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC
Confidence 788899998886611 111223333333 33332344 5888999999999999999999998643
Q ss_pred CCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 482 GVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 482 ~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
.|..-.+|..... ..+|++.++|++++ +++. .+.|..+.+++++.+.+..
T Consensus 147 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 147 ---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred ---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhccc
Confidence 4777777776654 47899999999865 5554 4778889999999887744
No 282
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.72 E-value=0.00073 Score=54.35 Aligned_cols=107 Identities=22% Similarity=0.356 Sum_probs=75.9
Q ss_pred CeEEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHH-HHhcCCCcEEEEEEeCCccc-------cccCCC--
Q 007882 434 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNE-------HHRAKS-- 503 (586)
Q Consensus 434 ~v~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~i~~~~id~~~~~-------~~~~~i-- 503 (586)
....|+.-+|++.| ..-+.++|.|=... +-=.-+..|.++| +......++.++.+.+.... .++|++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 45678889999988 55689999995432 3334567889999 55556678999999876522 257887
Q ss_pred CcCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHhcCCCCc
Q 007882 504 DGFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNASIPF 545 (586)
Q Consensus 504 ~~~Pt~~~~~~g~~~~~~~~~--~g~~~~~~l~~~i~~~~~~~~ 545 (586)
..+|.+++|..+.. .|++| .|..+.++|.+|+.+|+..=+
T Consensus 82 e~fPv~~LF~~~~~--~pv~~p~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 82 EDFPVIYLFVGDKE--EPVRYPFDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp CC-SEEEEEESSTT--SEEEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred ccCCEEEEecCCCC--CCccCCccCCccHHHHHHHHHhCCCeee
Confidence 57999999995554 68888 889999999999999987533
No 283
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.69 E-value=0.0031 Score=67.86 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=122.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe-CC--eeeeecCCC
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV-DG--QHKAYNGGR 186 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g--~~~~~~g~~ 186 (586)
+++.|+.|+.+.|..|......+++++ .+.+ ++.+...|..++.+++++|++...|++.+++ +| ..++|.|..
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~---~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE---KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHH-hcCC---cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecC
Confidence 566788999999999999998888888 4445 6888889988899999999999999999995 55 348999988
Q ss_pred CHHHHHHHHHHhcCC--CcccccchhHHHHhcccCCe-EEEEEecCCCCc---chHHHHHhccccCceeEEe---cCChh
Q 007882 187 TKDAIVTWIKKKIGP--GIYNITTLDEAERVLTSETK-VVLGYLNSLVGS---ESEVLADASRLEDDVNFYQ---TTNPD 257 (586)
Q Consensus 187 ~~~~l~~~i~~~~~~--~~~~i~~~~~l~~~~~~~~~-~~i~~~~~~~~~---~~~~f~~~~~~~~~~~F~~---~~~~~ 257 (586)
.-..+..||..++.- ....+ +.+..+.+..-+.. .+-.|+...+.. .......++.....+.... ...++
T Consensus 442 ~G~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 520 (555)
T TIGR03143 442 SGHELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD 520 (555)
T ss_pred ccHhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH
Confidence 878888887776522 22233 43444444433333 344555555533 2233444444444454433 35678
Q ss_pred HHHhcCCCCCCCCCeeEEeccCCcceecccCCCChhHHHHHH
Q 007882 258 VAKIFHLDSKVNRPALVMVKKETEKISYFDGKFDKSTIADFV 299 (586)
Q Consensus 258 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi 299 (586)
++++|++.. -|++++= + ...+.|..+.++|..||
T Consensus 521 ~~~~~~v~~---vP~~~i~---~--~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 521 LKDEYGIMS---VPAIVVD---D--QQVYFGKKTIEEMLELI 554 (555)
T ss_pred HHHhCCcee---cCEEEEC---C--EEEEeeCCCHHHHHHhh
Confidence 999999975 7988842 1 24466888889998886
No 284
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.69 E-value=0.0003 Score=65.62 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=65.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---------cHHHHHHcCCCCCcEEEEEeCC--e
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------ENELAHEYDVQGFPTIYFFVDG--Q 178 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~Pt~~~~~~g--~ 178 (586)
++..|++||.+-|++|+++.|.+..+++++.- .|..+.+|-.- +...+.+++|..+|+++++..+ .
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~---~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL---SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 56889999999999999999999999998833 44445554321 2356789999999999999633 3
Q ss_pred e-eeecCCCCHHHHHHHHHHhc
Q 007882 179 H-KAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 179 ~-~~~~g~~~~~~l~~~i~~~~ 199 (586)
. ..-.|..+.+.|.+-|....
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 3 34568889998877665543
No 285
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.68 E-value=0.00016 Score=67.91 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------ccccCCCCcCcEEEEEeCCCccc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------EHHRAKSDGFPTILFFPAGNKSF 519 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~-----------~~~~~~i~~~Pt~~~~~~g~~~~ 519 (586)
++.-+++||.+.|+.|+++.|+++.+++++.- .+..+.+|.... ...++++..+|++++...+....
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 45789999999999999999999999999853 566666665522 22478999999999885553332
Q ss_pred CccccccccCHHHHHHHHHhc
Q 007882 520 DPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 520 ~~~~~~g~~~~~~l~~~i~~~ 540 (586)
.|+.+ |..+.++|.+=|...
T Consensus 228 ~pv~~-G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPLAY-GFISQDELKERILNV 247 (256)
T ss_pred EEEee-ccCCHHHHHHHHHHH
Confidence 45554 889999997766543
No 286
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.66 E-value=4.1e-05 Score=64.25 Aligned_cols=68 Identities=22% Similarity=0.407 Sum_probs=42.5
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccccc---CCCCcCcEEEEEeC-CCcc
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR---AKSDGFPTILFFPA-GNKS 518 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~---~~i~~~Pt~~~~~~-g~~~ 518 (586)
.....++.|..+|||.|+...|.+.++++..++ ..+.++..|.+.....+ .+..++|+++++.+ |+.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 345678889999999999999999999998543 35666666655544433 47899999999955 5554
No 287
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00025 Score=56.29 Aligned_cols=72 Identities=21% Similarity=0.416 Sum_probs=53.1
Q ss_pred chhHHhh--ccCCcEEEEEeCC--------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc---------ccCC
Q 007882 442 NFDEIVL--DESKDVLLEIYAP--------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAK 502 (586)
Q Consensus 442 ~f~~~v~--~~~~~~~v~f~~~--------~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~---------~~~~ 502 (586)
.|++.+. .+++.++|+|+++ ||+.|.+..|.+.+..+.... ++.|+.+++..... ...+
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCCC
Confidence 4555542 2455699999884 999999999999999986554 68888888766442 1234
Q ss_pred C-CcCcEEEEEeCC
Q 007882 503 S-DGFPTILFFPAG 515 (586)
Q Consensus 503 i-~~~Pt~~~~~~g 515 (586)
+ .++||++=|.++
T Consensus 92 ~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 92 ILTAVPTLLRWKRQ 105 (128)
T ss_pred ceeecceeeEEcCc
Confidence 4 899999999763
No 288
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00043 Score=64.82 Aligned_cols=113 Identities=17% Similarity=0.353 Sum_probs=87.5
Q ss_pred CCCCeEEeChhhHHHHHhCC---CeEEEEEECC----CChhhhhhhHHHHHHHHHhhcC-----CCceEEEEEeCCCcHH
Q 007882 91 DDKDVVVLKERNFSDVIENN---KFVMVEFYAP----WCGHCQALAPEYAAAATELKSA-----NESVVLAKVDATEENE 158 (586)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~---~~~lv~f~a~----wC~~C~~~~p~~~~~~~~~~~~-----~~~v~~~~vd~~~~~~ 158 (586)
++..|+.+++++|..++... -..+|+|.|. .|.-|+.+..+|.-++..+... +.++-|..||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 45679999999999999642 3477888875 4999999999999999876543 3478999999999999
Q ss_pred HHHHcCCCCCcEEEEEe--CC------eeeeecCCCCHHHHHHHHHHhcCCCc
Q 007882 159 LAHEYDVQGFPTIYFFV--DG------QHKAYNGGRTKDAIVTWIKKKIGPGI 203 (586)
Q Consensus 159 l~~~~~i~~~Pt~~~~~--~g------~~~~~~g~~~~~~l~~~i~~~~~~~~ 203 (586)
+.+.+++...|++++|. .| ....+.-+...+.+.+|+.+...-.+
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 99999999999999994 23 11222223448889999988764433
No 289
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=4.6e-05 Score=67.95 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=67.3
Q ss_pred HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eeeeecC
Q 007882 106 VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNG 184 (586)
Q Consensus 106 ~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~g 184 (586)
...+++..++.||++||.+|.++...+..+++..+ ++.++.++.+..++++..+.+...|++.++..| ...+..|
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhc
Confidence 33467889999999999999999999999998883 599999999999999999999999999999888 4445555
Q ss_pred CCCH
Q 007882 185 GRTK 188 (586)
Q Consensus 185 ~~~~ 188 (586)
....
T Consensus 89 ~~~~ 92 (227)
T KOG0911|consen 89 ADPP 92 (227)
T ss_pred cCcH
Confidence 4433
No 290
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.60 E-value=0.00025 Score=66.11 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=65.9
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------cccCCCCcCcEEEEEeCCCccc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------HHRAKSDGFPTILFFPAGNKSF 519 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----------~~~~~i~~~Pt~~~~~~g~~~~ 519 (586)
++.-|++||.+.|+.|+.+.|+++.+++++.- .+..+.+|..... ..++++..+|++++...+....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 45789999999999999999999999999854 5666777753321 2368999999999996554322
Q ss_pred CccccccccCHHHHHHHHHhc
Q 007882 520 DPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 520 ~~~~~~g~~~~~~l~~~i~~~ 540 (586)
.|+.| |..+.++|.+=|...
T Consensus 221 ~pv~~-G~iS~deL~~Ri~~v 240 (248)
T PRK13703 221 RPLSY-GFITQDDLAKRFLNV 240 (248)
T ss_pred EEEee-ccCCHHHHHHHHHHH
Confidence 45554 889999997766544
No 291
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00056 Score=64.12 Aligned_cols=118 Identities=17% Similarity=0.319 Sum_probs=89.3
Q ss_pred CCeEEEeCcchhHHhhccC--CcEEEEEeCC----CChhhhhhhHHHHHHHHHhcCC------CcEEEEEEeCCcccc--
Q 007882 433 GDVKIVVGNNFDEIVLDES--KDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH-- 498 (586)
Q Consensus 433 ~~v~~l~~~~f~~~v~~~~--~~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~~------~~i~~~~id~~~~~~-- 498 (586)
..|..++++.|..++.... ..++|+|.|. .|.-|+.+...+.-++..+... .++-|..||.++...
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F 119 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF 119 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence 5689999999999986544 3588899885 7999999999999999987632 268899999877553
Q ss_pred ccCCCCcCcEEEEEeC--CCcccCcccccc---ccCHHHHHHHHHhcCCCCcc-ccCCC
Q 007882 499 HRAKSDGFPTILFFPA--GNKSFDPINVDV---DRTVVALYKFLKKNASIPFK-IQKPT 551 (586)
Q Consensus 499 ~~~~i~~~Pt~~~~~~--g~~~~~~~~~~g---~~~~~~l~~~i~~~~~~~~~-~~~~~ 551 (586)
+.+++.++|++++|+. |++. +...+++ ....++|.+|+++.++.... +-.|.
T Consensus 120 q~l~ln~~P~l~~f~P~~~n~~-~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp 177 (331)
T KOG2603|consen 120 QQLNLNNVPHLVLFSPAKGNKK-RSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPP 177 (331)
T ss_pred HHhcccCCCeEEEeCCCccccc-cCccchhhhcchhHHHHHHHHHHhhhheeeeeecCC
Confidence 7899999999999933 3332 3333332 44689999999999986654 44443
No 292
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.59 E-value=0.00029 Score=54.73 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=53.1
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----cc---cCCCCcCcEEEEEeCCCcccCccccc
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----HH---RAKSDGFPTILFFPAGNKSFDPINVD 525 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----~~---~~~i~~~Pt~~~~~~g~~~~~~~~~~ 525 (586)
-++.|+.+||++|+.+...|+++...+.+ +.+..+|...+. .. ..+..++|+++ .+|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~---i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i------- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD---FDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI------- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC---CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE-------
Confidence 47889999999999999999999876533 556666665432 21 22457899975 466553
Q ss_pred cccCHHHHHHHHHhcCC
Q 007882 526 VDRTVVALYKFLKKNAS 542 (586)
Q Consensus 526 g~~~~~~l~~~i~~~~~ 542 (586)
| ..++|.++++.+.+
T Consensus 70 g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 G--GCTDFEAYVKENLG 84 (85)
T ss_pred c--CHHHHHHHHHHhcc
Confidence 2 35788888887764
No 293
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.59 E-value=0.00024 Score=54.85 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=63.2
Q ss_pred ccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-cccCceeEEecCChhHHHhcCCCCCCCCCeeEEeccC-Cc
Q 007882 204 YNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE-TE 281 (586)
Q Consensus 204 ~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~-~~ 281 (586)
.++.+++++.. +...+..+||||.+.+++++..|..+| .+++++.|.+...... ...... .+.+++||+. ..
T Consensus 2 kef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~----~~~~i~frp~~~~ 75 (91)
T cd03070 2 KEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPP----GDNIIYFPPGHNA 75 (91)
T ss_pred ceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCC----CCCeEEECCCCCC
Confidence 45677788877 777889999999999999999999987 7899999999887655 222221 2456678886 55
Q ss_pred ceecccCCCC
Q 007882 282 KISYFDGKFD 291 (586)
Q Consensus 282 ~~~~y~g~~~ 291 (586)
....|.|.++
T Consensus 76 ~~~~y~G~~t 85 (91)
T cd03070 76 PDMVYLGSLT 85 (91)
T ss_pred CceEEccCCC
Confidence 5688999874
No 294
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.57 E-value=0.00024 Score=66.54 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=60.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeC----------------C------------------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA----------------T------------------ 154 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------~------------------ 154 (586)
+++.+++.|..+.||+|+++.+.+.++.+. +..+.+..... .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 467889999999999999999998876431 11222222221 1
Q ss_pred --------CcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHHHHh
Q 007882 155 --------EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 155 --------~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~ 198 (586)
++..+++++||+++||++ +.+|..+ .|..+.+.|.++|...
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 123788899999999998 6788644 7888999999998754
No 295
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.56 E-value=0.00022 Score=60.04 Aligned_cols=68 Identities=22% Similarity=0.472 Sum_probs=52.0
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----------------------ccCCCC-
Q 007882 450 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD- 504 (586)
Q Consensus 450 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-----------------------~~~~i~- 504 (586)
.+++++|.||+. ||++|+...+.+.++..+++. .++.++.+..+.... ..+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 468999999999 999999999999999999885 357777776654321 135666
Q ss_pred -----cCcEEEEEeCCCcc
Q 007882 505 -----GFPTILFFPAGNKS 518 (586)
Q Consensus 505 -----~~Pt~~~~~~g~~~ 518 (586)
.+|+++++..+..+
T Consensus 103 ~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTTSEESEEEEEEETTSBE
T ss_pred ccCCceEeEEEEECCCCEE
Confidence 78888888665544
No 296
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.55 E-value=0.00094 Score=54.63 Aligned_cols=100 Identities=10% Similarity=0.021 Sum_probs=79.3
Q ss_pred EEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHH---hhcCCCceEEEEEeCCCcHHHHHHcCCCC--CcE
Q 007882 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATE---LKSANESVVLAKVDATEENELAHEYDVQG--FPT 170 (586)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~---~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt 170 (586)
.++|.++...+...+.+..+.|+. -..-....+.+.++|++ +++ ++.|+.+|.+......+.+|+.. +|.
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~~~~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG---AINFLTADGDKFRHPLLHLGKTPADLPV 76 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc---eEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence 457788888888877776666772 23346788899999999 766 79999999998888999999997 999
Q ss_pred EEEEeC-C-eeee-ecCCCCHHHHHHHHHHhcC
Q 007882 171 IYFFVD-G-QHKA-YNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 171 ~~~~~~-g-~~~~-~~g~~~~~~l~~~i~~~~~ 200 (586)
+.+... + .... +.+..+.+.|.+|++..+.
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 999863 3 3344 6688999999999998764
No 297
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.53 E-value=0.00012 Score=56.74 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-------ccCCCCcCcEEEEEeCCCc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-------~~~~i~~~Pt~~~~~~g~~ 517 (586)
|+.|+++||++|+.+.+.+.++. .. ..+.+..+|.+.+.. ...++.++|+++ -+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 57899999999999999999976 22 247778888764331 335788999974 46654
No 298
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.53 E-value=0.00021 Score=61.68 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----------------------ccCCCCcC
Q 007882 451 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSDGF 506 (586)
Q Consensus 451 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-----------------------~~~~i~~~ 506 (586)
+++++|.|| +.||+.|....+.+.++...+.. .++.++.|..+.... ..|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 788999999 58999999999999999998865 245555554433211 23566666
Q ss_pred ---------cEEEEEe-CCCcccCccccccccCHHHHH
Q 007882 507 ---------PTILFFP-AGNKSFDPINVDVDRTVVALY 534 (586)
Q Consensus 507 ---------Pt~~~~~-~g~~~~~~~~~~g~~~~~~l~ 534 (586)
|+++++. +|+.+. .+.|......+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~---~~~g~~~~~~~~ 136 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVK---VWRKVKPKGHAE 136 (140)
T ss_pred cccccCCcceeEEEECCCCEEEE---EEecCCccchHH
Confidence 8888885 465553 556644444443
No 299
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.50 E-value=0.002 Score=51.11 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=63.9
Q ss_pred ChhhHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH----HHHHHcCCC-CCcEE
Q 007882 99 KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYDVQ-GFPTI 171 (586)
Q Consensus 99 ~~~~~~~~~~~--~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~-~~Pt~ 171 (586)
+.+++++++.. .++++|+=.++.|+-+......|++.+....+ .+.++.+|.-+.+ .+++++||. .-|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 46788888876 78988888999999999999999999887765 5889999988876 567889987 58999
Q ss_pred EEEeCCeee--eecCCCCHHHH
Q 007882 172 YFFVDGQHK--AYNGGRTKDAI 191 (586)
Q Consensus 172 ~~~~~g~~~--~~~g~~~~~~l 191 (586)
+++++|+.+ .-.+..+.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 999999543 33455555554
No 300
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.48 E-value=0.0003 Score=61.10 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=79.0
Q ss_pred CeEEEe-CcchhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEE
Q 007882 434 DVKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTIL 510 (586)
Q Consensus 434 ~v~~l~-~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~ 510 (586)
....+. ..+|-+.+. ....||+.||-+.-..|+-|...++.+|+.+-+ ..|+++|++..+ +.+++|..+|++.
T Consensus 67 ~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~ 142 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVA 142 (211)
T ss_pred eEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEE
Confidence 345555 568888774 456699999999999999999999999998755 789999998876 4799999999999
Q ss_pred EEeCCCcccCccccc--c---ccCHHHHHHHHHhcC
Q 007882 511 FFPAGNKSFDPINVD--V---DRTVVALYKFLKKNA 541 (586)
Q Consensus 511 ~~~~g~~~~~~~~~~--g---~~~~~~l~~~i~~~~ 541 (586)
+|++|......+.+. | ..+.+.|..-|.+..
T Consensus 143 l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~ 178 (211)
T KOG1672|consen 143 LFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSG 178 (211)
T ss_pred EEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhcc
Confidence 999998875333333 2 235555555555444
No 301
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.45 E-value=0.0045 Score=66.01 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=114.5
Q ss_pred ccEEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCCCCC
Q 007882 324 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 402 (586)
Q Consensus 324 ~~~l~~~~~~-~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t 402 (586)
+..+.+|.+. +.+.+..+.+++++.. .+++.+...+.. ....|.+.+...+......|-+-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~-s~ki~~~~~~~~---------------~~~~p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASL-SDKISLTQNTAD---------------TLRKPSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHh-CCCeEEEEecCC---------------cCCCCeEEEecCCcccceEEEecCC
Confidence 3445566554 3466677777777764 356666443311 1235777776443333345566667
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 007882 403 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR 481 (586)
Q Consensus 403 ~e~i~~fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 481 (586)
-..+..|+..+++-.-. -..++.+..+. +..=+++ -+..|.++.|++|......+++++...+
T Consensus 84 g~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 84 GHEFTSLVLAILQVGGH---------------GPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred cHHHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 77888898887663211 22343333333 3332334 5888999999999999999999988754
Q ss_pred CCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhcCC
Q 007882 482 GVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 542 (586)
Q Consensus 482 ~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~~ 542 (586)
+|..-.+|..... ..+|++.++|++++ +++. .+.|..+.+++.+.+.+...
T Consensus 148 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 148 ---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE-----FHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred ---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhhccC
Confidence 4666667766544 47899999999875 5554 46788888888888876643
No 302
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.44 E-value=0.00097 Score=54.88 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=64.4
Q ss_pred hccCCcEEEEEeCC----CChhhhhhh--HHHHHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEEEEe-CCC
Q 007882 448 LDESKDVLLEIYAP----WCGHCQAFE--PTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP-AGN 516 (586)
Q Consensus 448 ~~~~~~~~v~f~~~----~C~~C~~~~--~~~~~~~~~~~~~~~i~~~~id~~~~~~----~~~~i~~~Pt~~~~~-~g~ 516 (586)
.+..|.++|++|++ ||..|+... |.+.+.. .. ++++...|++..+. ..++++++|++.++- .++
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---Hc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 45678999999999 899997655 4443333 22 58899999987664 568999999999882 222
Q ss_pred cccCccccccccCHHHHHHHHHhcC
Q 007882 517 KSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 517 ~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
...-..+..|..++++|+..|....
T Consensus 89 ~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 89 RMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 2111337889999999999887643
No 303
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.43 E-value=0.0011 Score=47.55 Aligned_cols=54 Identities=24% Similarity=0.492 Sum_probs=40.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHH----HHHHcCCCCCcEEEEEeCCe
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~ 178 (586)
++.|+.+||++|+.....|.+ .++.+-.+|.+.+++ +.+..+..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~---------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE---------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH---------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH---------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 578999999999999888732 147777788877643 333449999999875 654
No 304
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.43 E-value=0.00066 Score=62.33 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=55.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeC-----------------------------------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA----------------------------------- 153 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------------------------- 153 (586)
+++..++.|..+.|++|+++.+.+.+. .. +..+.+..+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 368899999999999999999988761 11 11222222221
Q ss_pred --------CCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHH
Q 007882 154 --------TEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 154 --------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i 195 (586)
.++..+++++||+++|+++ +.+|.. ..|..+.+.|.++|
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQLEALL 197 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHHHhhC
Confidence 1223788889999999997 778864 56877888887664
No 305
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.40 E-value=0.0015 Score=57.20 Aligned_cols=31 Identities=39% Similarity=0.671 Sum_probs=27.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHh
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATEL 139 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~ 139 (586)
+.+++++.|+.++|++|+.+.|.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4678999999999999999999999987665
No 306
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0013 Score=55.01 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=59.8
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHH---HHhcCCCcEEEEEEeCCccc------------------cccCCCCcCc
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVIAKMDGTTNE------------------HHRAKSDGFP 507 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~---~~~~~~~~i~~~~id~~~~~------------------~~~~~i~~~P 507 (586)
..++..+++|-++.|+.|..+...+.... +-+.+ .+.++.++++... ++.+.++++|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 45788999999999999999987775443 33333 5777777665321 2458999999
Q ss_pred EEEEEeC-CCcccCccccccccCHHHHHHHHH
Q 007882 508 TILFFPA-GNKSFDPINVDVDRTVVALYKFLK 538 (586)
Q Consensus 508 t~~~~~~-g~~~~~~~~~~g~~~~~~l~~~i~ 538 (586)
|+++|.. |+.+. ...|-...++.+..++
T Consensus 118 tfvFfdk~Gk~Il---~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTIL---ELPGYMPPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEE---ecCCCCCHHHHHHHHH
Confidence 9999954 56654 5667777766655554
No 307
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.38 E-value=0.0054 Score=51.71 Aligned_cols=108 Identities=13% Similarity=0.257 Sum_probs=79.2
Q ss_pred CeEEeChhhHH-HHHhCCCeEEEEEECC--CChh-h-hhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCC--
Q 007882 94 DVVVLKERNFS-DVIENNKFVMVEFYAP--WCGH-C-QALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ-- 166 (586)
Q Consensus 94 ~v~~l~~~~~~-~~~~~~~~~lv~f~a~--wC~~-C-~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-- 166 (586)
.+++|+..++- ..=..+..-+|.|.-. -|.+ + ......|.++|+++++ ..+.|+.+|.++...+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCcc
Confidence 57888876653 3444455656666432 1332 3 3467789999999988 23999999999998899999985
Q ss_pred CCcEEEEEeCC--eeeeecCCCCHHHHHHHHHHhcCCCc
Q 007882 167 GFPTIYFFVDG--QHKAYNGGRTKDAIVTWIKKKIGPGI 203 (586)
Q Consensus 167 ~~Pt~~~~~~g--~~~~~~g~~~~~~l~~~i~~~~~~~~ 203 (586)
++|+++++... +...+.|..+.+.|.+|+...+....
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 59999999633 33337799999999999999986653
No 308
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.37 E-value=0.0016 Score=53.17 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=70.6
Q ss_pred EeChhhHHHHHhCCCeEEEEEECC---CChhhhhhhHHHHHHHHHhh-cCCCceEEEEEeCCCcHHHHHHcCCCC----C
Q 007882 97 VLKERNFSDVIENNKFVMVEFYAP---WCGHCQALAPEYAAAATELK-SANESVVLAKVDATEENELAHEYDVQG----F 168 (586)
Q Consensus 97 ~l~~~~~~~~~~~~~~~lv~f~a~---wC~~C~~~~p~~~~~~~~~~-~~~~~v~~~~vd~~~~~~l~~~~~i~~----~ 168 (586)
.+|.+|..... ..+..++++-.. --..-......+.++|+.++ + ++.|+.+|.++.....+.+|+.. +
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR---KLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC---eEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 45566666664 333444443232 22344668889999999998 5 79999999988877889999984 9
Q ss_pred cEEEEEe-CCeeeeecCCC-CHHHHHHHHHHh
Q 007882 169 PTIYFFV-DGQHKAYNGGR-TKDAIVTWIKKK 198 (586)
Q Consensus 169 Pt~~~~~-~g~~~~~~g~~-~~~~l~~~i~~~ 198 (586)
|++.++. ++......+.. +.+.|.+|++..
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 9999986 44333356777 899999999864
No 309
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.0018 Score=51.89 Aligned_cols=75 Identities=20% Similarity=0.414 Sum_probs=65.4
Q ss_pred hhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007882 100 ERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 100 ~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (586)
....++++. ..+.++|-|-..|-+.|.++...|.++++.+.. -..++-||.++-+.+.+-|++...||+++|-++
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 455666663 358899999999999999999999999999877 578888999999999999999999999999776
No 310
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.33 E-value=0.00082 Score=60.26 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=58.1
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------------c-------------c
Q 007882 451 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------H-------------H 499 (586)
Q Consensus 451 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----------------~-------------~ 499 (586)
++.+||+|| +.||++|....+.|.++.+.+... ++.++.|..+... . .
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 678999999 899999999999999999998753 3444444433211 0 1
Q ss_pred cCCCC------cCcEEEEEe-CCCcccCccccc----cccCHHHHHHHHHhc
Q 007882 500 RAKSD------GFPTILFFP-AGNKSFDPINVD----VDRTVVALYKFLKKN 540 (586)
Q Consensus 500 ~~~i~------~~Pt~~~~~-~g~~~~~~~~~~----g~~~~~~l~~~i~~~ 540 (586)
.|++. ..|+.+++. +|+.+. .+. ..++.++|++.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRH---ITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence 24554 467888885 565543 221 245778888888764
No 311
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.30 E-value=0.0039 Score=55.15 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=64.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-------------------------------
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN------------------------------- 157 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------------- 157 (586)
..+++|+.|+..-|++|..+.+.+.++.+++-+.+ ++.+..++.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 46889999999999999999999999998882222 6877777653111
Q ss_pred -------------------------------------HHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHHHH
Q 007882 158 -------------------------------------ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKK 197 (586)
Q Consensus 158 -------------------------------------~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~ 197 (586)
..+++++|.++||+++ ||+. +.|..+.+.|.++|.+
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHHHHHHcC
Confidence 4556689999999887 8865 4788999999988864
No 312
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.30 E-value=0.0023 Score=49.16 Aligned_cols=94 Identities=20% Similarity=0.373 Sum_probs=73.9
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC--cHHHHHHcCCC----CCc-EEE
Q 007882 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQ----GFP-TIY 172 (586)
Q Consensus 100 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P-t~~ 172 (586)
-.+|.+++....-+||.|..+- ..-......|.++|+..++ .-.++-|||.+ .+.||+++.|. .-| ++.
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG---~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKG---QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcC---ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 4788899988888888887664 3344455689999999988 56888999987 67899999988 455 455
Q ss_pred EEeCCe-eeeecCCCCHHHHHHHHHH
Q 007882 173 FFVDGQ-HKAYNGGRTKDAIVTWIKK 197 (586)
Q Consensus 173 ~~~~g~-~~~~~g~~~~~~l~~~i~~ 197 (586)
-|++|. -..|....+..++..|++.
T Consensus 85 HYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCccccccchhhHHHHHHHhhC
Confidence 568994 4689999999999999863
No 313
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.23 E-value=0.0012 Score=58.69 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=33.8
Q ss_pred cCCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007882 450 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 494 (586)
Q Consensus 450 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~ 494 (586)
.++.++|.||+.| |++|....|.|.++++.+. ++.++.+..+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence 3678999999999 9999999999999998874 3555555444
No 314
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.19 E-value=0.0023 Score=68.29 Aligned_cols=97 Identities=12% Similarity=0.248 Sum_probs=75.2
Q ss_pred EeChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007882 97 VLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 97 ~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (586)
.|++...+.+-.- ++..+..|.+++|++|......+.+++.... +|.+-.||..+.++++++|+|.++|++++
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~~~~~~~~~~~~v~~VP~~~i-- 175 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDGALFQDEVEARNIMAVPTVFL-- 175 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEchhCHhHHHhcCCcccCEEEE--
Confidence 3444444444332 4556888999999999999999988887532 69999999999999999999999999965
Q ss_pred CCeeeeecCCCCHHHHHHHHHHhcC
Q 007882 176 DGQHKAYNGGRTKDAIVTWIKKKIG 200 (586)
Q Consensus 176 ~g~~~~~~g~~~~~~l~~~i~~~~~ 200 (586)
+|. ..+.|..+.+.+.+.+.+..+
T Consensus 176 ~~~-~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 176 NGE-EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred CCc-EEEecCCCHHHHHHHHhcccc
Confidence 554 347798888888888876554
No 315
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.16 E-value=0.001 Score=51.64 Aligned_cols=75 Identities=23% Similarity=0.323 Sum_probs=51.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc----HHHHHHcCC--CCCcEEEEEeCCeeeeecCCCC
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----NELAHEYDV--QGFPTIYFFVDGQHKAYNGGRT 187 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i--~~~Pt~~~~~~g~~~~~~g~~~ 187 (586)
++.|..+||++|.+....|.++..... .+.+..+|...+ ..+.+..+- ..+|+++ .+|.. .| .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~---ig--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH---VG--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE---ec--C
Confidence 678999999999999999988764432 366777777643 246566663 7899984 35643 23 3
Q ss_pred HHHHHHHHHHhc
Q 007882 188 KDAIVTWIKKKI 199 (586)
Q Consensus 188 ~~~l~~~i~~~~ 199 (586)
.+.|.+++.+..
T Consensus 71 ~~dl~~~~~~~~ 82 (86)
T TIGR02183 71 CTDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHHhcc
Confidence 467777776643
No 316
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.15 E-value=0.0011 Score=50.92 Aligned_cols=56 Identities=18% Similarity=0.402 Sum_probs=41.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-H----HHHHHcCCCCCcEEEEEeCCe
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-N----ELAHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~----~l~~~~~i~~~Pt~~~~~~g~ 178 (586)
++.|+++||++|+.....|.++.. .+.++.++...+ . .+.+..++.++|++ |.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 577999999999999999987643 356667776654 2 34455688899996 45664
No 317
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.15 E-value=0.0013 Score=57.62 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=34.6
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007882 450 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 494 (586)
Q Consensus 450 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~ 494 (586)
.++++||.||+. ||+.|....+.+.++.+.+.+. ++.++.|..+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 467899999976 6888999999999999988753 4666666554
No 318
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.12 E-value=0.0018 Score=58.79 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=57.5
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCC-cEEEEEEeCC--------c-----------------cccccCC
Q 007882 450 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGT--------T-----------------NEHHRAK 502 (586)
Q Consensus 450 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~-~i~~~~id~~--------~-----------------~~~~~~~ 502 (586)
.++++||+|| +.||+.|....+.|.++...+.... .+..+.+|.. . ..+..|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3678999999 9999999999999999999886532 3444444321 0 0012355
Q ss_pred CC------cCcEEEEE-eCCCcccCccccc--cccCHHHHHHHHHh
Q 007882 503 SD------GFPTILFF-PAGNKSFDPINVD--VDRTVVALYKFLKK 539 (586)
Q Consensus 503 i~------~~Pt~~~~-~~g~~~~~~~~~~--g~~~~~~l~~~i~~ 539 (586)
+. ..|+.+++ ++|..+. ..... ..+..++|++.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~-~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQA-VEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHH
Confidence 54 35888888 4565542 11111 24688888888754
No 319
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.08 E-value=0.0038 Score=49.83 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=62.4
Q ss_pred CCCeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhH---HHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCC
Q 007882 92 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAP---EYAAAATELKSANESVVLAKVDATEENELAHEYDVQGF 168 (586)
Q Consensus 92 ~~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p---~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 168 (586)
..+...++.++++..+..+...+ .|++.-|..|.+... ++=++.+.+.+ .+..+.|.-..+..+..+|++..+
T Consensus 8 ~~g~~~vd~~~ld~~l~~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~~~e~~L~~r~gv~~~ 83 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLAAPGDAV-LFFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVARAAERALAARFGVRRW 83 (107)
T ss_dssp T-TEEEE-CCCHHHHHHCCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEHHHHHHHHHHHT-TSS
T ss_pred hcCCeeechhhHHHHHhCCCcEE-EEECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECchhHHHHHHHhCCccC
Confidence 34577888999999998766655 455555555554433 44444445544 677778887778899999999999
Q ss_pred cEEEEEeCCeee-eecCCCC
Q 007882 169 PTIYFFVDGQHK-AYNGGRT 187 (586)
Q Consensus 169 Pt~~~~~~g~~~-~~~g~~~ 187 (586)
|+++|+++|... ...|.++
T Consensus 84 PaLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 84 PALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp SEEEEEETTEEEEEEESSST
T ss_pred CeEEEEECCEEEEEecCeec
Confidence 999999999654 4445443
No 320
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.04 E-value=0.0018 Score=50.31 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=51.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----c-ccCC--CCcCcEEEEEeCCCcccCcccccc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-HRAK--SDGFPTILFFPAGNKSFDPINVDV 526 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----~-~~~~--i~~~Pt~~~~~~g~~~~~~~~~~g 526 (586)
++.|+.+||++|+++...|+++..... .+.+..+|...+. . ...+ ..++|.++ -+|+.+ |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i-------g 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV-------G 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe-------c
Confidence 678999999999999999998865432 3556666665322 1 2223 47999984 355443 2
Q ss_pred ccCHHHHHHHHHhcCCCC
Q 007882 527 DRTVVALYKFLKKNASIP 544 (586)
Q Consensus 527 ~~~~~~l~~~i~~~~~~~ 544 (586)
..++|.++++++.+++
T Consensus 70 --G~~dl~~~~~~~~~~~ 85 (86)
T TIGR02183 70 --GCTDFEQLVKENFDIE 85 (86)
T ss_pred --CHHHHHHHHHhccccc
Confidence 3578899988876653
No 321
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.04 E-value=0.0012 Score=57.00 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=36.7
Q ss_pred cCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcCCC--cEEEEEEeCC
Q 007882 450 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVD--SIVIAKMDGT 494 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~~--~i~~~~id~~ 494 (586)
.++.++|.||++||++ |....+.++++...+.... ++.++.+..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999998 9999999999999987642 4666666543
No 322
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.02 E-value=0.0036 Score=46.70 Aligned_cols=66 Identities=15% Similarity=0.272 Sum_probs=46.5
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHc---CCCCCcEEEEEeCCeeeeecCCCCHHHH
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEY---DVQGFPTIYFFVDGQHKAYNGGRTKDAI 191 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~g~~~~~~g~~~~~~l 191 (586)
..|..+||++|+.....|.+ .++.+-.+|.++++.....+ |..++|++++ +|. .+.|+.+.+.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~---------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE---------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH---------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHH
Confidence 56889999999999988864 14777778887776554444 8889999744 342 24556677766
Q ss_pred HH
Q 007882 192 VT 193 (586)
Q Consensus 192 ~~ 193 (586)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 54
No 323
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.96 E-value=0.0065 Score=53.08 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=92.6
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhccC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCc
Q 007882 408 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 485 (586)
Q Consensus 408 ~fi~~~~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~ 485 (586)
.|++.|...++..+.... ....-+.|..|++..|...|...+ -.|||..|...-+.|+-+...+..++.+|+.
T Consensus 68 rfLE~YR~kRl~E~r~~~--~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--- 142 (240)
T KOG3170|consen 68 RFLEMYRIKRLAEWRATA--EKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--- 142 (240)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---
Confidence 366666665554322111 011247799999999999986543 4688999999999999999999999999876
Q ss_pred EEEEEEeCCccccccCCCCcCcEEEEEeCCCcccC---cccccc-ccCHHHHHHHHHhcCCC
Q 007882 486 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD---PINVDV-DRTVVALYKFLKKNASI 543 (586)
Q Consensus 486 i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~~---~~~~~g-~~~~~~l~~~i~~~~~~ 543 (586)
+.|+++=.... .+.|-=...||+++|..|..... +..+-| ..+.+++..++-+....
T Consensus 143 iKFVki~at~c-IpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~ 203 (240)
T KOG3170|consen 143 IKFVKIPATTC-IPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAA 203 (240)
T ss_pred ceEEecccccc-cCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcccc
Confidence 77877765443 35677778999999988865421 333444 44788888888776643
No 324
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.95 E-value=0.002 Score=55.75 Aligned_cols=75 Identities=24% Similarity=0.529 Sum_probs=45.9
Q ss_pred cchhHHhhccCCcEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCCcEEEEEEeCCcccc--ccC--------CCCcCc
Q 007882 441 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEP-TY--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFP 507 (586)
Q Consensus 441 ~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~i~~~~id~~~~~~--~~~--------~i~~~P 507 (586)
+.|... ...+++++|.++++||+.|+.|.. .| .++++.+.. .++-+++|.+..+. ..| +..+.|
T Consensus 28 ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 28 EALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 344443 467899999999999999999885 33 345555544 58889999887553 222 567999
Q ss_pred EEEEE-eCCCcc
Q 007882 508 TILFF-PAGNKS 518 (586)
Q Consensus 508 t~~~~-~~g~~~ 518 (586)
+.+|. ++|+..
T Consensus 105 l~vfltPdg~p~ 116 (163)
T PF03190_consen 105 LTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TTS-EE
T ss_pred ceEEECCCCCee
Confidence 98888 666654
No 325
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.94 E-value=0.0019 Score=48.18 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccC----CCCcCcEEEEEeCCCcccCcccccccc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRA----KSDGFPTILFFPAGNKSFDPINVDVDR 528 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~----~i~~~Pt~~~~~~g~~~~~~~~~~g~~ 528 (586)
++.|+++||++|+.+...+.+. .+.+..+|.+.+. ...+ .+..+|++++ +|. ...| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~------~i~g-~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE------HLSG-F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE------EEec-C
Confidence 5789999999999988888762 2334445544332 2222 5789999875 342 2334 4
Q ss_pred CHHHHHHH
Q 007882 529 TVVALYKF 536 (586)
Q Consensus 529 ~~~~l~~~ 536 (586)
+...|.++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 55566654
No 326
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.88 E-value=0.0083 Score=57.04 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=59.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeC----------------CC------------------
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA----------------TE------------------ 155 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------~~------------------ 155 (586)
++.+++.|.-+.|++|+++.+.+..+.+. + +|.+..+-. .+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 56789999999999999999988765542 1 233322221 00
Q ss_pred ----------------cHHHHHHcCCCCCcEEEEEe-CCeeeeecCCCCHHHHHHHHH
Q 007882 156 ----------------ENELAHEYDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIK 196 (586)
Q Consensus 156 ----------------~~~l~~~~~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~~i~ 196 (586)
+..+.+++||+++|++++-+ +|......|..+.+.|.+++.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 11466779999999999876 577778889999998887764
No 327
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.88 E-value=0.011 Score=45.21 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=51.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHH---HHcCCCCCcEEEEEeCCeeeeecCCCCHHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA---HEYDVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~ 190 (586)
++.|..+||++|+...-.|.+ .+|.|-.+|++.+++.. +..|...+|++++ +|. ..++...+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~---------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES---------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH---------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHH
Confidence 667899999999999887743 14778888888776533 3457789999854 442 234677888
Q ss_pred HHHHHHHh
Q 007882 191 IVTWIKKK 198 (586)
Q Consensus 191 l~~~i~~~ 198 (586)
|.+++...
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 88877654
No 328
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.87 E-value=0.012 Score=48.25 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=61.0
Q ss_pred hhhHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE-EeC
Q 007882 100 ERNFSDVI--ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF-FVD 176 (586)
Q Consensus 100 ~~~~~~~~--~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~-~~~ 176 (586)
+...++++ ...+.++|-|-.+|-+.|.++-..|.+++++.+. -..++.||.++-+.+.+-|.+. -|.+++ |-+
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence 45677776 3468999999999999999999999999999877 6889999999999999999998 785544 446
Q ss_pred Ce
Q 007882 177 GQ 178 (586)
Q Consensus 177 g~ 178 (586)
|+
T Consensus 84 nk 85 (133)
T PF02966_consen 84 NK 85 (133)
T ss_dssp TE
T ss_pred Ce
Confidence 63
No 329
>PHA03050 glutaredoxin; Provisional
Probab=96.87 E-value=0.0031 Score=51.11 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=41.7
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC---c----HHHHHHcCCCCCcEEEEEe
Q 007882 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---E----NELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 103 ~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~Pt~~~~~ 175 (586)
.++.+++++ ++.|..+|||+|+.....|.+..-... .+-.+|.++ . ..+.+..|.+.+|+++ .
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~------~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG------AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--F 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC------CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--E
Confidence 345555554 667999999999999988876532111 233444443 2 2355556888999983 4
Q ss_pred CCe
Q 007882 176 DGQ 178 (586)
Q Consensus 176 ~g~ 178 (586)
+|+
T Consensus 76 ~g~ 78 (108)
T PHA03050 76 GKT 78 (108)
T ss_pred CCE
Confidence 453
No 330
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.85 E-value=0.0023 Score=55.73 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=34.7
Q ss_pred CCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 007882 451 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 497 (586)
Q Consensus 451 ~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~ 497 (586)
++.+ |++|++.||+.|+...|.+.++.+.+.. ..+.++.|..+...
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~ 69 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPE 69 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHH
Confidence 4455 4445699999999999999999999864 34777777765543
No 331
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.82 E-value=0.0026 Score=54.97 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=34.4
Q ss_pred cCCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007882 450 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 494 (586)
Q Consensus 450 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~ 494 (586)
.++++||+||+.| |++|+...|.|.++.+.+. ++.++.|+.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 3678999999998 6999999999999999874 3556666654
No 332
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.004 Score=49.91 Aligned_cols=99 Identities=14% Similarity=0.257 Sum_probs=69.3
Q ss_pred cchhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCccc
Q 007882 441 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSF 519 (586)
Q Consensus 441 ~~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 519 (586)
...+..+.. ..+.++|-|...|-+.|..+...+.++++.+.+...+.+..+|....-..-|.+...|++++|-+++...
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmk 91 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMK 91 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEE
Confidence 345555533 4578999999999999999999999999999886566666666555555778999999999886654321
Q ss_pred ------Ccccccc-ccCHHHHHHHHHh
Q 007882 520 ------DPINVDV-DRTVVALYKFLKK 539 (586)
Q Consensus 520 ------~~~~~~g-~~~~~~l~~~i~~ 539 (586)
....+.+ ..+.+++++.++-
T Consensus 92 iD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 92 IDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred EeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 0011222 2356667766653
No 333
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.80 E-value=0.0078 Score=54.31 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=60.0
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc---------------------------cccC
Q 007882 450 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------HHRA 501 (586)
Q Consensus 450 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~---------------------------~~~~ 501 (586)
.++++||+|| +.||+.|....+.|.++..++... ++.++.+..+... +..|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 3568999999 999999999999999999998653 3444444433311 1235
Q ss_pred CC----CcC--cEEEEEe-CCCcccCcccc--ccccCHHHHHHHHHhcC
Q 007882 502 KS----DGF--PTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKNA 541 (586)
Q Consensus 502 ~i----~~~--Pt~~~~~-~g~~~~~~~~~--~g~~~~~~l~~~i~~~~ 541 (586)
++ .++ |+.+++. +|+.+. ...+ ...++.+++++.|+..-
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~-~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQA-IEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHhhh
Confidence 55 245 8888885 565542 1122 12579999999996543
No 334
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.79 E-value=0.022 Score=52.69 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=26.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHH---HHHHHHhhc
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEY---AAAATELKS 141 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~---~~~~~~~~~ 141 (586)
+++.+|.|+.-.|++|..+.|.+ ..+.+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 45779999999999999999876 666766654
No 335
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.77 E-value=0.0023 Score=57.36 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=36.5
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 494 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~ 494 (586)
.++++||.|||+||+.|+ ..|.|+++.+++++ ..+.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~-~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD-QGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh-CCeEEEEeecc
Confidence 478999999999999997 48899999999976 35888888774
No 336
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.76 E-value=0.0049 Score=46.97 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=41.2
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc---HHHHHHcCCCCCcEEEEEeCCe
Q 007882 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---NELAHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 111 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~~~~~g~ 178 (586)
+..++.|+.+||++|++....|.+. ++.+-.+|++++ ..+.+..+...+|.++ .+|.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~ 66 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGK 66 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCE
Confidence 3447789999999999999888631 356666777655 3455556889999985 3664
No 337
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=96.76 E-value=0.0065 Score=47.23 Aligned_cols=89 Identities=25% Similarity=0.386 Sum_probs=62.0
Q ss_pred ccEEEEEEeccc---hhhHHHHHHHHHHhccC----c----eEEEEEECCCcccccccccccCccCCCCceEEEecCCCC
Q 007882 324 KNQLLLFAVSND---SEKLLPVFEEAAKSFKG----K----LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 392 (586)
Q Consensus 324 ~~~l~~~~~~~~---~~~~~~~l~~lA~~~~~----~----~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~ 392 (586)
.+.+++|.+.++ .+...+.+..+|.++.. + .....+++++ +....+..+.++.. ..|.+++.+...+
T Consensus 15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ed-e~tdsLRDf~nL~d-~~P~LviLDip~r 92 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGED-DMTDSLRDYTNLPE-AAPLLTILDMSAR 92 (116)
T ss_pred CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccc-hHHHHHHHhcCCCc-cCceEEEEecccc
Confidence 456777776633 56677778877775531 1 3333444433 22445666778854 5899999999989
Q ss_pred CcccCC-CCCCHHHHHHHHHHHh
Q 007882 393 KKHILD-GELTLDKIKTFGEDFL 414 (586)
Q Consensus 393 ~~y~~~-~~~t~e~i~~fi~~~~ 414 (586)
.+|.++ +++|.+++.+|+.+|+
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhh
Confidence 999886 4799999999999986
No 338
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.74 E-value=0.0047 Score=45.81 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=38.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHH----HHHcCCCCCcEEEEEeCCe
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~ 178 (586)
++.|+++||++|+.....|.+.. +.+..+|...+... .+..+...+|+++ .+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 56799999999999998887542 55667777766543 3345777888774 4664
No 339
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.68 E-value=0.003 Score=55.01 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=33.9
Q ss_pred CcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc
Q 007882 452 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 495 (586)
Q Consensus 452 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~ 495 (586)
+.++|.|| ++||+.|....|.+.++.+++.. .++.++.+..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCCC
Confidence 77777777 89999999999999999999875 345666655443
No 340
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.64 E-value=0.013 Score=62.39 Aligned_cols=98 Identities=14% Similarity=0.283 Sum_probs=74.9
Q ss_pred EeChhhHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007882 97 VLKERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 97 ~l~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (586)
.|+++..+.+-. .++..+..|..+.|++|......+.+++.... +|..-.+|..+.++++++|++.++|++++
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~~~~~~~~~~~~v~~VP~~~i-- 176 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDGALFQDEVEALGIQGVPAVFL-- 176 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEchhCHHHHHhcCCcccCEEEE--
Confidence 444555554443 24556888999999999988888888776643 58888899999999999999999999976
Q ss_pred CCeeeeecCCCCHHHHHHHHHHhcCC
Q 007882 176 DGQHKAYNGGRTKDAIVTWIKKKIGP 201 (586)
Q Consensus 176 ~g~~~~~~g~~~~~~l~~~i~~~~~~ 201 (586)
+|. ..+.|..+.+.+.+.+....+.
T Consensus 177 ~~~-~~~~g~~~~~~~~~~l~~~~~~ 201 (515)
T TIGR03140 177 NGE-EFHNGRMDLAELLEKLEETAGV 201 (515)
T ss_pred CCc-EEEecCCCHHHHHHHHhhccCc
Confidence 554 3477888888887777665433
No 341
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.63 E-value=0.0029 Score=48.65 Aligned_cols=55 Identities=13% Similarity=0.316 Sum_probs=39.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-----ccCCCCcCcEEEEEeCCCc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----HRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~-----~~~~i~~~Pt~~~~~~g~~ 517 (586)
++.|+++||++|+.+.+.+.++.. .+.++.++...+. . ...+..++|.+ |-+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 578999999999999999998754 3556777766542 1 23467899996 445544
No 342
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.54 E-value=0.0089 Score=45.74 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=59.3
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC---eeeeecCCCCHH
Q 007882 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKD 189 (586)
Q Consensus 113 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g---~~~~~~g~~~~~ 189 (586)
.++.|..+.|+-|..+...+..+.... ++.+-.||+++++.+..+|+. .+|.+.+-..+ ......+..+.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~ 74 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEE 74 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHH
Confidence 378899999999999999888755432 589999999999999999995 79996553311 245666788999
Q ss_pred HHHHHHH
Q 007882 190 AIVTWIK 196 (586)
Q Consensus 190 ~l~~~i~ 196 (586)
.|.+||+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999875
No 343
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.54 E-value=0.0057 Score=48.81 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=37.7
Q ss_pred HHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH---H----HHHHcCCCCCcEEEEEeCC
Q 007882 105 DVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN---E----LAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 105 ~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~----l~~~~~i~~~Pt~~~~~~g 177 (586)
+.+++++ ++.|..+|||+|++....|.+. ++.+-.+|++..+ + +.+..|...+|.+ |.+|
T Consensus 3 ~~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~---------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 3 RMVSEKA--VVIFSRSSCCMCHVVKRLLLTL---------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred hhhccCC--EEEEECCCCHHHHHHHHHHHHc---------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 3444444 6679999999999998876643 2334445554432 2 3333467899997 4556
No 344
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.53 E-value=0.0047 Score=47.08 Aligned_cols=54 Identities=15% Similarity=0.391 Sum_probs=37.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHH----HHHcCCCCCcEEEEEeCCe
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~ 178 (586)
++.|+.+||++|+.....|.+. ++.+-.+|++.++.. .+..+..++|++ +.+|.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 3578999999999999888742 255555666666543 344578899997 44564
No 345
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.50 E-value=0.01 Score=54.56 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=58.0
Q ss_pred CCcEEE-EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------------------------ccc
Q 007882 451 SKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------------HHR 500 (586)
Q Consensus 451 ~~~~~v-~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----------------------------~~~ 500 (586)
++.++| .|++.||+.|....+.|.++..+++.. ++.++.+..+... ...
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 555554 689999999999999999999988753 3444444333210 023
Q ss_pred CCCC------cCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHhcC
Q 007882 501 AKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNA 541 (586)
Q Consensus 501 ~~i~------~~Pt~~~~~~g~~~~~~~~~--~g~~~~~~l~~~i~~~~ 541 (586)
|++. .+|+.+++.....+.....+ .+.++.+++++.|+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 5553 47999999544343111111 34689999999998654
No 346
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.49 E-value=0.017 Score=51.98 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=29.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhc
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKS 141 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (586)
.+++.++.|+...||+|+.+.+.+..+..++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 468899999999999999999999999888744
No 347
>PRK15000 peroxidase; Provisional
Probab=96.47 E-value=0.012 Score=53.85 Aligned_cols=89 Identities=7% Similarity=0.117 Sum_probs=61.0
Q ss_pred cCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc------------------------------c
Q 007882 450 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------------H 498 (586)
Q Consensus 450 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~------------------------------~ 498 (586)
.++.+||+||+. ||+.|....+.|.++.+++... ++.++.+..+... +
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 467999999995 9999999999999999999753 3445555444211 0
Q ss_pred ccCCCC------cCcEEEEEe-CCCcccCcccc--ccccCHHHHHHHHHhc
Q 007882 499 HRAKSD------GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKN 540 (586)
Q Consensus 499 ~~~~i~------~~Pt~~~~~-~g~~~~~~~~~--~g~~~~~~l~~~i~~~ 540 (586)
..|++. .+|+.+++. +|..+. ...+ .-.++.+++++.++..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~-~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRH-QVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHHh
Confidence 125655 689888885 555432 1112 1257999999998753
No 348
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.44 E-value=0.0053 Score=52.76 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=36.0
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc
Q 007882 450 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 495 (586)
Q Consensus 450 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~ 495 (586)
.+++++|+|| +.||+.|....|.+.++..+++. ..+.++.+..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 5788999999 78999999999999999999854 345666665543
No 349
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.44 E-value=0.0087 Score=46.11 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=64.1
Q ss_pred ccEEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCC--CceEEEecCCCCCcccCCCC
Q 007882 324 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA--PKVLAYTGNDDAKKHILDGE 400 (586)
Q Consensus 324 ~~~l~~~~~~-~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~--~p~~~i~~~~~~~~y~~~~~ 400 (586)
..++++|... .+-...+..+.++|...+|.-+.+|+||.+.+ .+.+|+.+.+++.. .|..+-+...+..+-.|+-.
T Consensus 20 ~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~ 98 (112)
T cd03067 20 NNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQ 98 (112)
T ss_pred CcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcccCCCccccccch
Confidence 3455666655 56677888999999999999999999998765 77899999998433 33333333333333446778
Q ss_pred CCHHHHHHHHHH
Q 007882 401 LTLDKIKTFGED 412 (586)
Q Consensus 401 ~t~e~i~~fi~~ 412 (586)
.|..++..|+.+
T Consensus 99 ~t~kSmv~FlrD 110 (112)
T cd03067 99 LTFKSMVAFLRD 110 (112)
T ss_pred hhHHHHHHHhhC
Confidence 999999999865
No 350
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.43 E-value=0.012 Score=44.13 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=37.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHH----HHcCCC-CCcEEEEEeCCe
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA----HEYDVQ-GFPTIYFFVDGQ 178 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt~~~~~~g~ 178 (586)
++.|+.+||++|......|.+. ++.+-.+|++.+++.. +..+.. ++|++ +.+|.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCE
Confidence 5679999999999998888651 3566667777664433 345666 89987 34553
No 351
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.35 E-value=0.011 Score=52.08 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=83.1
Q ss_pred CCeEEEe-CcchhHHhhcc--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-ccCCCCcCcE
Q 007882 433 GDVKIVV-GNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT 508 (586)
Q Consensus 433 ~~v~~l~-~~~f~~~v~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-~~~~i~~~Pt 508 (586)
+.|..++ ++.|.+.+-.. ...++|..|-+.-.-|-++...+.=||..++. +.|.++-.+.-.+ .+|....+|+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeeccccchhhhcccCCce
Confidence 4566655 67999988433 23578899999999999999999999998865 8888888665444 6899999999
Q ss_pred EEEEeCCCcccCcccccc----ccCHHHHHHHHHhcCC
Q 007882 509 ILFFPAGNKSFDPINVDV----DRTVVALYKFLKKNAS 542 (586)
Q Consensus 509 ~~~~~~g~~~~~~~~~~g----~~~~~~l~~~i~~~~~ 542 (586)
+++|++|..+.+.++... ......+..||+...-
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 999999998765444432 4567788999988654
No 352
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.32 E-value=0.0089 Score=42.70 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=35.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c---cc-CCCCcCcEEEE
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H---HR-AKSDGFPTILF 511 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~---~~-~~i~~~Pt~~~ 511 (586)
++.|+.+||++|+.+...|++. ++.+-.+|.+.+. . .+ .+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999999888542 2555555655542 2 22 38899999875
No 353
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.30 E-value=0.016 Score=43.26 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=37.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHH----HHHHcCCCCCcEEE
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIY 172 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~ 172 (586)
++.|..+||+.|++....|.+. ++.+-.+|+.+++. +.+..+-..+|+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5678999999999998887751 46677778877654 45555778899983
No 354
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.29 E-value=0.02 Score=53.78 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=56.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC----------------c------------------
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT----------------T------------------ 495 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~----------------~------------------ 495 (586)
+++.+++.|..+.|++|+++.+.+.++.+. + -.+.+..+... .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 457789999999999999999998887541 1 12222211110 0
Q ss_pred ---cc-------cccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhcC
Q 007882 496 ---NE-------HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 541 (586)
Q Consensus 496 ---~~-------~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~~ 541 (586)
+. +.+++|+++|+++ +++|+. ..|..+.+.|.++|.++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~------~~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL------VPGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeE------eeCCCCHHHHHHHHHHcc
Confidence 00 1247999999988 677765 368889999999998653
No 355
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.054 Score=46.67 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=62.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC---------------------CcHHHHHHcCCC
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDAT---------------------EENELAHEYDVQ 166 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~i~ 166 (586)
.|++++++|| ..|++-|-.+.-.|.....++...+ +.++.|..+ .+..+++.||+.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 6888999998 6799999999999999999998854 555555443 345788888873
Q ss_pred ------------CCcEEEEEe-CCe-eeeecC---CCCHHHHHHHHHHh
Q 007882 167 ------------GFPTIYFFV-DGQ-HKAYNG---GRTKDAIVTWIKKK 198 (586)
Q Consensus 167 ------------~~Pt~~~~~-~g~-~~~~~g---~~~~~~l~~~i~~~ 198 (586)
..++++++. +|. ...+.. .-..+.+.+++.+.
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 357888886 673 334422 23456666666554
No 356
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.21 E-value=0.021 Score=45.39 Aligned_cols=65 Identities=23% Similarity=0.392 Sum_probs=41.7
Q ss_pred hHHHHHhCCCeEEEEEE----CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHH----HHHcCCCCCcEEEE
Q 007882 102 NFSDVIENNKFVMVEFY----APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYF 173 (586)
Q Consensus 102 ~~~~~~~~~~~~lv~f~----a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~ 173 (586)
-.+.+++++++ +|+-. ++|||+|++....|.+. ++.+..+|..+++.+ .+..|...+|.++
T Consensus 4 ~v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf- 72 (97)
T TIGR00365 4 RIKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY- 72 (97)
T ss_pred HHHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE-
Confidence 34556666553 44333 38999999998887653 355667787666543 3445677899884
Q ss_pred EeCCe
Q 007882 174 FVDGQ 178 (586)
Q Consensus 174 ~~~g~ 178 (586)
.+|.
T Consensus 73 -i~g~ 76 (97)
T TIGR00365 73 -VKGE 76 (97)
T ss_pred -ECCE
Confidence 4453
No 357
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0045 Score=55.55 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=61.0
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCcccccc
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDV 526 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g 526 (586)
...+..++.||++||..|..+...+..+++..+ ++.++..+.+... +..+.+.+.|.+.++..|.++. +..|
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~---~l~~ 88 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD---RLSG 88 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh---hhhc
Confidence 367889999999999999999999999999883 4778888776644 4778999999999998988875 5555
Q ss_pred c
Q 007882 527 D 527 (586)
Q Consensus 527 ~ 527 (586)
.
T Consensus 89 ~ 89 (227)
T KOG0911|consen 89 A 89 (227)
T ss_pred c
Confidence 3
No 358
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.03 E-value=0.01 Score=43.91 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=36.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--c----cCCCCcCcEEEEEeCCCcc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~----~~~i~~~Pt~~~~~~g~~~ 518 (586)
++.|+++||++|+.+.+.|.+.. +.+..+|...+.. . ..+..++|+++ .+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 56799999999999999988753 4445556555431 2 23557888764 455443
No 359
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.02 E-value=0.018 Score=52.81 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.3
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHH
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNK 475 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~ 475 (586)
+.+..++.|+.+.|++|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 35789999999999999999999876
No 360
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.00 E-value=0.036 Score=42.31 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=47.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----ccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT 529 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-----~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~ 529 (586)
+..|..+||++|+.++..|.+ . ++.|-.+|++.+.. ...+...+|++++ ++. ...| ..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~---gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~------~~~G-f~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R---GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL------SWSG-FR 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C---CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE------EEec-CC
Confidence 678999999999999988855 2 35555566654432 2346679999865 332 2333 67
Q ss_pred HHHHHHHHHhcC
Q 007882 530 VVALYKFLKKNA 541 (586)
Q Consensus 530 ~~~l~~~i~~~~ 541 (586)
.+.|.+.+..+.
T Consensus 66 ~~~l~~~~~~~~ 77 (81)
T PRK10329 66 PDMINRLHPAPH 77 (81)
T ss_pred HHHHHHHHHhhh
Confidence 788888877654
No 361
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.00 E-value=0.026 Score=41.97 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=44.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH---HHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN---ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~ 190 (586)
++.|..+||++|.+....|.+. ++.+..+|.+.+. .+....+...+|.+ +.+|..+ | ..+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---e--CHHH
Confidence 6789999999999998777641 3556666766553 23344588899997 4556432 3 2566
Q ss_pred HHHHH
Q 007882 191 IVTWI 195 (586)
Q Consensus 191 l~~~i 195 (586)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 66654
No 362
>PHA03050 glutaredoxin; Provisional
Probab=95.98 E-value=0.0091 Score=48.41 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=38.4
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc------c-ccCCCCcCcEEEEEeCCCcc
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------H-HRAKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~------~-~~~~i~~~Pt~~~~~~g~~~ 518 (586)
-|+.|..+|||+|+++...|++..-... .+..+.+|..... . ..-+.+++|+++ -+|+.+
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~i 80 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTSI 80 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEEE
Confidence 3777999999999999999887643221 3555566542221 1 223667999974 455544
No 363
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.95 E-value=0.1 Score=42.13 Aligned_cols=89 Identities=19% Similarity=0.356 Sum_probs=66.6
Q ss_pred ChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC--
Q 007882 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD-- 176 (586)
Q Consensus 99 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~-- 176 (586)
+.++++.++...++++|-|+..--. .....|.++|..+.+ .+.|+... ...+...+++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 3556778787888889988876433 466788899999866 57887654 3567788888 688999832
Q ss_pred ------CeeeeecCCCCHHHHHHHHHHh
Q 007882 177 ------GQHKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 177 ------g~~~~~~g~~~~~~l~~~i~~~ 198 (586)
-....|.|..+.+.|.+||...
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2345699999999999999754
No 364
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.90 E-value=0.16 Score=40.79 Aligned_cols=93 Identities=9% Similarity=0.251 Sum_probs=68.6
Q ss_pred EEe-ChhhHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 96 VVL-KERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 96 ~~l-~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
..+ +..+++.++. .++.++|-|+..--. .....|.++|..+.+ .+.|+... +..+...+++. .|++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATF---DSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence 344 4566888898 788888888876444 355678999998866 57776554 34667778764 699999
Q ss_pred EeC-C-eeeee-cCCCCHHHHHHHHHHh
Q 007882 174 FVD-G-QHKAY-NGGRTKDAIVTWIKKK 198 (586)
Q Consensus 174 ~~~-g-~~~~~-~g~~~~~~l~~~i~~~ 198 (586)
+++ . ....| .|..+.+.|.+||...
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 975 3 44668 7788999999999754
No 365
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.88 E-value=0.035 Score=51.42 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=58.4
Q ss_pred CCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------------------------ccc
Q 007882 451 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------------HHR 500 (586)
Q Consensus 451 ~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----------------------------~~~ 500 (586)
++. +|+.|++.||+.|....+.|.++..++... ++.++.+.++... +..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 444 467899999999999999999999998753 3444444444310 012
Q ss_pred CCC-------CcCcEEEEEe-CCCcccCccccc--cccCHHHHHHHHHhc
Q 007882 501 AKS-------DGFPTILFFP-AGNKSFDPINVD--VDRTVVALYKFLKKN 540 (586)
Q Consensus 501 ~~i-------~~~Pt~~~~~-~g~~~~~~~~~~--g~~~~~~l~~~i~~~ 540 (586)
|++ ..+|+++++. +|+.+. ...|. ..++.++|++.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~-~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRL-IMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEE-EEEcCCCCCCCHHHHHHHHHHh
Confidence 454 2579999995 455432 22222 257899999999753
No 366
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.77 E-value=0.032 Score=43.64 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=33.4
Q ss_pred CCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHH----HHHcCCCCCcEEEEEeCCe
Q 007882 120 PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 120 ~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~ 178 (586)
+||++|+.....|.+. ++.+..+|...++++ .+..|...+|++ |.+|.
T Consensus 21 ~~Cp~C~~ak~~L~~~---------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQL---------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHc---------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 7999999998777653 255666676666543 444577899997 34664
No 367
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.76 E-value=0.017 Score=43.97 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----ccCCCCcCcEEEEEeCCCc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-----~~~~i~~~Pt~~~~~~g~~ 517 (586)
...-|++|+.+||++|+++...|.+. ++.+-.+|++.+.. ...+..++|.+++ +|+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 44557789999999999999998742 24444455544321 2246789999853 6654
No 368
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.75 E-value=0.043 Score=48.12 Aligned_cols=85 Identities=19% Similarity=0.361 Sum_probs=65.2
Q ss_pred CCeEEeChhhHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCc
Q 007882 93 KDVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (586)
+.|..+++..|-+-+ ..+-+|+|..|...-+-|.-+...|..++.+|.. +.|+.+=.... ...|.-...|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c---IpNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC---IPNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc---cCCCcccCCC
Confidence 458889998888655 3467899999999999999999999999999977 78887743321 1235667889
Q ss_pred EEEEEeCC-eeeeecC
Q 007882 170 TIYFFVDG-QHKAYNG 184 (586)
Q Consensus 170 t~~~~~~g-~~~~~~g 184 (586)
|+++|..| ...++.|
T Consensus 164 Tl~VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIG 179 (240)
T ss_pred eEEEeecchHHhheeh
Confidence 99999988 3344443
No 369
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.72 E-value=0.041 Score=52.19 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=58.3
Q ss_pred cCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------------c-------------c
Q 007882 450 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------E-------------H 498 (586)
Q Consensus 450 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~-----------------~-------------~ 498 (586)
.++.+|++|| +.||+.|....+.|.++.+++... ++.++.+..+.. . +
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 3567777777 899999999999999999998753 233333333321 0 1
Q ss_pred ccCCCC-----cCcEEEEEe-CCCcccCcccc--ccccCHHHHHHHHHhc
Q 007882 499 HRAKSD-----GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKN 540 (586)
Q Consensus 499 ~~~~i~-----~~Pt~~~~~-~g~~~~~~~~~--~g~~~~~~l~~~i~~~ 540 (586)
..|++. ..|+.+++. +|..+. ...+ ...++.+++++.|...
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~-~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKH-VAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHHh
Confidence 235653 579988885 565542 2212 2367999999988753
No 370
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.62 E-value=0.038 Score=43.63 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=41.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEe--CCCc------------------------------HHHHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD--ATEE------------------------------NELAH 161 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd--~~~~------------------------------~~l~~ 161 (586)
++.|+.++|++|..+.+.+.++.....+ ++.+..+. .... ..+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4679999999999999999998744433 44444433 2221 24566
Q ss_pred HcCCCCCcEEEEEe
Q 007882 162 EYDVQGFPTIYFFV 175 (586)
Q Consensus 162 ~~~i~~~Pt~~~~~ 175 (586)
++|+.++||+++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999998754
No 371
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.60 E-value=0.049 Score=50.44 Aligned_cols=88 Identities=7% Similarity=0.109 Sum_probs=56.7
Q ss_pred CCcEE-EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----------------------------cc
Q 007882 451 SKDVL-LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 500 (586)
Q Consensus 451 ~~~~~-v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-----------------------------~~ 500 (586)
++.++ +.|+++||+.|....+.|.+++.++... ++.++.+.++.... ..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 45544 5889999999999999999999998753 34444444442211 12
Q ss_pred CCC-------CcCcEEEEEe-CCCcccCccccc--cccCHHHHHHHHHhc
Q 007882 501 AKS-------DGFPTILFFP-AGNKSFDPINVD--VDRTVVALYKFLKKN 540 (586)
Q Consensus 501 ~~i-------~~~Pt~~~~~-~g~~~~~~~~~~--g~~~~~~l~~~i~~~ 540 (586)
|++ ...|+.+++. +|... ....+. -.++.+++++.|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir-~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVR-LILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 343 1468888885 45443 211222 257999999999764
No 372
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.58 E-value=0.1 Score=47.91 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCCCeEEeChhh---HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEE
Q 007882 80 FDDSEYKEPEIDDKDVVVLKERN---FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKV 151 (586)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~l~~~~---~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~v 151 (586)
............+..|+.+++.. +-+..+.++|.+|+|-+-.|||-..-.+.|.++++++.+ .+.|..|
T Consensus 69 l~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d---~adFl~V 140 (237)
T PF00837_consen 69 LFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD---VADFLIV 140 (237)
T ss_pred cccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh---hhheehh
Confidence 33444555666778899999887 445567889999999999999999999999999999987 3444444
No 373
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.56 E-value=0.025 Score=42.16 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=41.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c---ccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H---HRAKSDGFPTILFFPAGNKSFDPINVDVDRT 529 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~---~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~ 529 (586)
+.+|..++|++|+.++..|.+. ++.+-.+|+..+. . ...+..++|.+++ +|.. .+ +..+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~-----~~-~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL-----SW-SGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc-----EE-eccC
Confidence 3578899999999999998752 2445555555443 2 2347789999754 4443 22 3355
Q ss_pred HHHHHH
Q 007882 530 VVALYK 535 (586)
Q Consensus 530 ~~~l~~ 535 (586)
.+.|.+
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02194 65 PDKLKA 70 (72)
T ss_pred HHHHHh
Confidence 555544
No 374
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.045 Score=41.63 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=35.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-----HHHHHc-CCCCCcEEEE
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEY-DVQGFPTIYF 173 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Pt~~~ 173 (586)
++.|..+|||+|++....|.+ . ++.+-.+|.+... +..++. |.+.+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~--g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------K--GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------c--CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999999877762 1 3555555555443 334444 7899999755
No 375
>PRK13189 peroxiredoxin; Provisional
Probab=95.44 E-value=0.056 Score=50.37 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=56.1
Q ss_pred CC-cEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------------------------ccc
Q 007882 451 SK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------------HHR 500 (586)
Q Consensus 451 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-----------------------------~~~ 500 (586)
++ .+|++|++.||+.|....+.|.+++..+... ++.++.+.++... ...
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 55 4456778999999999999999999998753 3344444333210 023
Q ss_pred CCCC-------cCcEEEEEe-CCCcccCcccc--ccccCHHHHHHHHHhc
Q 007882 501 AKSD-------GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKN 540 (586)
Q Consensus 501 ~~i~-------~~Pt~~~~~-~g~~~~~~~~~--~g~~~~~~l~~~i~~~ 540 (586)
|++. .+|+.+++. +|..+ ....+ ...++.+++++.|...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir-~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIR-AILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 4443 468888885 55543 12122 2467899999999754
No 376
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.42 E-value=0.065 Score=47.96 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=21.7
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhc
Q 007882 116 EFYAPWCGHCQALAPEYAAAATELKS 141 (586)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (586)
+|..|+|+.|-...|.|.++..++..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58999999999999999999999877
No 377
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.42 E-value=0.058 Score=49.61 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=31.5
Q ss_pred cEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007882 453 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 494 (586)
Q Consensus 453 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~ 494 (586)
.+|+.|++.||+.|....+.|.++.+.++.. ++.++.+..+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D 68 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVD 68 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 3556889999999999999999999998753 3445544443
No 378
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.42 E-value=0.015 Score=54.97 Aligned_cols=88 Identities=20% Similarity=0.425 Sum_probs=72.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEe-CCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCH
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-ATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (586)
..++-+.||++||+..+...|.+.-....+.. +....|+ ....+.+..++++.+.|++.+...--...|.|.++.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDL 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccH
Confidence 67899999999999999999999988877753 4444443 223367788999999999999888888999999999
Q ss_pred HHHHHHHHHhcCC
Q 007882 189 DAIVTWIKKKIGP 201 (586)
Q Consensus 189 ~~l~~~i~~~~~~ 201 (586)
..|++|..++++-
T Consensus 152 ~sLv~fy~~i~~~ 164 (319)
T KOG2640|consen 152 ASLVNFYTEITPM 164 (319)
T ss_pred HHHHHHHHhhccc
Confidence 9999999888853
No 379
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.33 E-value=0.036 Score=41.56 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=34.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cc----cCCCC-cCcEEEEEeCCCc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HH----RAKSD-GFPTILFFPAGNK 517 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~----~~~i~-~~Pt~~~~~~g~~ 517 (586)
++.|+.+||++|+.+...|++. ++.+..+|++.+. .+ ..+.. ++|+++ -+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEE
Confidence 5679999999999999988762 2444455554432 22 23555 899864 45544
No 380
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.28 E-value=0.039 Score=41.20 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=35.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--c----cCCCCcCcEEEEEeCCCcc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~----~~~i~~~Pt~~~~~~g~~~ 518 (586)
++.|+.+||++|+++...|++. ++.+..+|+..+.. + ..+-..+|+++ -+|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 6779999999999999988862 24455555554332 2 23456889974 455443
No 381
>PRK10638 glutaredoxin 3; Provisional
Probab=95.28 E-value=0.048 Score=41.90 Aligned_cols=54 Identities=13% Similarity=0.308 Sum_probs=38.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHH----HHHHcCCCCCcEEEEEeCCe
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~ 178 (586)
++.|..+||++|++....|.+. ++.+..+|++.++. +.+..+...+|+++ .+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 5678899999999998887752 35566677766643 34445778899873 3563
No 382
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.19 E-value=0.028 Score=42.76 Aligned_cols=55 Identities=15% Similarity=0.287 Sum_probs=34.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccccc----CCCCcCcEEEEEeCCCc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR----AKSDGFPTILFFPAGNK 517 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~----~~i~~~Pt~~~~~~g~~ 517 (586)
++.|+.+||++|+.+...|++. + -.+....++.+....+. .+..++|+++ -+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~-i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----G-VTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----C-CCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 4678999999999999999863 2 12444444433322222 3678899974 45544
No 383
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.19 E-value=0.038 Score=43.65 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=29.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 494 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~ 494 (586)
++.|+.+.|++|..+.+.+.++.....+.-.+.+.-+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 4689999999999999999999855554334444444333
No 384
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.15 E-value=0.023 Score=43.48 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=52.0
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--ccCCCCcCcEEEEEeCCCcccCccccccccCHH
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 531 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~ 531 (586)
.+++|..+.|+-|..+...+..+.... .+.+-.+|+..+.. .+|+. .+|.+.+=..+... ......+..+.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~-~~~~~~~~~d~~ 74 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFK-EQEELKWRFDEE 74 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGC-TSEEEESSB-HH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccc-ccceeCCCCCHH
Confidence 378899999999999999998865442 36666777766553 67885 69986542211111 122456788999
Q ss_pred HHHHHHH
Q 007882 532 ALYKFLK 538 (586)
Q Consensus 532 ~l~~~i~ 538 (586)
.|.+||+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999985
No 385
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.06 E-value=0.051 Score=40.41 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=42.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-c----cCCCCcCcEEEEEeCCCcccCccccccccC
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H----RAKSDGFPTILFFPAGNKSFDPINVDVDRT 529 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~-~----~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~ 529 (586)
++.|..+||+.|.+++..|.+. ++.+..+|.+.+.. . ..+..++|.+ |-+|+.+ | .
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i-------g--g 63 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI-------G--G 63 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE-------e--C
Confidence 6789999999999998888752 24455555554432 1 2367899996 4566543 2 3
Q ss_pred HHHHHHHH
Q 007882 530 VVALYKFL 537 (586)
Q Consensus 530 ~~~l~~~i 537 (586)
.++|.+|+
T Consensus 64 ~~~l~~~l 71 (72)
T cd03029 64 SDDLEKYF 71 (72)
T ss_pred HHHHHHHh
Confidence 56677765
No 386
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.04 E-value=0.05 Score=43.39 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=37.0
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc---cc----CCCCcCcEEEEEeCCCcc
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HR----AKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~---~~----~~i~~~Pt~~~~~~g~~~ 518 (586)
-++.|..+||++|+++...|.+.. ..+..+.+|...+.. .. -+..++|.+ |-+|+.+
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 366799999999999998887642 134456666443321 11 246799996 5566554
No 387
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.16 Score=40.58 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=40.5
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH-HHH----HHcCCCCCcEEEE
Q 007882 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-ELA----HEYDVQGFPTIYF 173 (586)
Q Consensus 102 ~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~----~~~~i~~~Pt~~~ 173 (586)
..+.++.+++ +|.|..+||++|+.+...|.. + +....++.+|-..+. ++. +--+.+.+|.+++
T Consensus 6 ~v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISENP--VVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhcCC--EEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3556666554 556999999999997766665 2 225667777765543 332 2335668998754
No 388
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=94.87 E-value=0.034 Score=44.48 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCeEEEeCcchhHHhhccCCcEEEEEeCC--CChhhhhhhHHHHHHHHHhcCCCcEEEEEEe--CCccccccCCCCcCcE
Q 007882 433 GDVKIVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD--GTTNEHHRAKSDGFPT 508 (586)
Q Consensus 433 ~~v~~l~~~~f~~~v~~~~~~~~v~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id--~~~~~~~~~~i~~~Pt 508 (586)
.....++.++++.++. .....+++|... .|+.|....=++-++.+.+.+ .+..+.++ .+.....+|++..+|+
T Consensus 9 ~g~~~vd~~~ld~~l~-~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLA-APGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp -TEEEE-CCCHHHHHH-CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred cCCeeechhhHHHHHh-CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence 3577889999999874 355555545443 245555555677888887776 45566666 2233347899999999
Q ss_pred EEEEeCCCccc
Q 007882 509 ILFFPAGNKSF 519 (586)
Q Consensus 509 ~~~~~~g~~~~ 519 (586)
+++|++|+.+.
T Consensus 86 Lvf~R~g~~lG 96 (107)
T PF07449_consen 86 LVFFRDGRYLG 96 (107)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 99999998764
No 389
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=94.86 E-value=0.87 Score=41.87 Aligned_cols=91 Identities=26% Similarity=0.379 Sum_probs=59.9
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhh-cCCCce--EEEEEeCCCc-H--------------------------
Q 007882 109 NNKFVMVEFYAPWCG-HCQALAPEYAAAATELK-SANESV--VLAKVDATEE-N-------------------------- 157 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~-~C~~~~p~~~~~~~~~~-~~~~~v--~~~~vd~~~~-~-------------------------- 157 (586)
+|++++|.|.-+.|+ -|-.....+..+.+++. ..+.++ .++.||=+.+ +
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 689999999999998 59999999999999888 444455 4555553221 1
Q ss_pred HHHHHcCCCC---------------CcEEEEEe-CCe-eeeecCCCCHHHHHHHHHHhc
Q 007882 158 ELAHEYDVQG---------------FPTIYFFV-DGQ-HKAYNGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 158 ~l~~~~~i~~---------------~Pt~~~~~-~g~-~~~~~g~~~~~~l~~~i~~~~ 199 (586)
++++.|+|.. -..++++. +|+ ...|.+....+.+.+.+++.+
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 4455555441 22344444 673 345666666777887777665
No 390
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=94.77 E-value=0.39 Score=44.33 Aligned_cols=91 Identities=20% Similarity=0.364 Sum_probs=63.6
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhhcCC-Cc--eEEEEEeCCCc--------------------------HH
Q 007882 109 NNKFVMVEFYAPWCG-HCQALAPEYAAAATELKSAN-ES--VVLAKVDATEE--------------------------NE 158 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~-~C~~~~p~~~~~~~~~~~~~-~~--v~~~~vd~~~~--------------------------~~ 158 (586)
.|+++|++|--+.|| -|-.+...+.++.+++.... .+ -.|+.||=..+ ..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 589999999999999 48888888888888776642 12 26777775322 16
Q ss_pred HHHHcCCCCCc-------------EEEEE--e-CCeeeeecCC-CCHHHHHHHHHHhc
Q 007882 159 LAHEYDVQGFP-------------TIYFF--V-DGQHKAYNGG-RTKDAIVTWIKKKI 199 (586)
Q Consensus 159 l~~~~~i~~~P-------------t~~~~--~-~g~~~~~~g~-~~~~~l~~~i~~~~ 199 (586)
+|++|.|..-+ ++++| . +|+.+.|.|. .+.+++.+-|.+++
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 77887765222 34444 3 7788888885 57788877776654
No 391
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.45 E-value=0.085 Score=46.14 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=40.7
Q ss_pred hCCCeEEEEEECCCChhhhhh-hHHHHHHHHHhhcCCCce-EEEEEeCCCc---HHHHHHcCC
Q 007882 108 ENNKFVMVEFYAPWCGHCQAL-APEYAAAATELKSANESV-VLAKVDATEE---NELAHEYDV 165 (586)
Q Consensus 108 ~~~~~~lv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~v-~~~~vd~~~~---~~l~~~~~i 165 (586)
.++..+|+.|.+.||+.|..+ .+.|.+.++++...+ + .++.|.++.. ...++++++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHHHHHHHHhhCC
Confidence 344556666678999999999 999999999998744 4 4666666543 346667666
No 392
>PRK10824 glutaredoxin-4; Provisional
Probab=94.44 E-value=0.13 Score=41.92 Aligned_cols=61 Identities=18% Similarity=0.377 Sum_probs=37.8
Q ss_pred hHHHHHhCCCeEEEEEEC-----CCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHH----HcCCCCCcEEE
Q 007882 102 NFSDVIENNKFVMVEFYA-----PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAH----EYDVQGFPTIY 172 (586)
Q Consensus 102 ~~~~~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~~ 172 (586)
-.+++++++++ +| |.. ||||+|++....|.... +.+..+|..++.++.. .-|.+.+|.++
T Consensus 7 ~v~~~I~~~~V-vv-f~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 7 KIQRQIAENPI-LL-YMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHHhcCCE-EE-EECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 35566766553 33 444 59999999988776642 3344456555544433 34677888875
Q ss_pred E
Q 007882 173 F 173 (586)
Q Consensus 173 ~ 173 (586)
+
T Consensus 76 I 76 (115)
T PRK10824 76 V 76 (115)
T ss_pred E
Confidence 4
No 393
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.34 E-value=0.15 Score=41.84 Aligned_cols=95 Identities=15% Similarity=0.260 Sum_probs=59.6
Q ss_pred cchhHHhh-ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcE-EEEEeCCC
Q 007882 441 NNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPT-ILFFPAGN 516 (586)
Q Consensus 441 ~~f~~~v~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~~~~~i~~~Pt-~~~~~~g~ 516 (586)
-..++.+. ..++.+++-|...|-+.|..+...+.+++.+.++. ..++-+|.+.-. ..-|.+. -|. ++||-+++
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~--a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF--AVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--EEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc--eEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 34556664 45688999999999999999999999999998874 556666666432 2456677 675 55553443
Q ss_pred ccc------Ccccccc-ccCHHHHHHHHH
Q 007882 517 KSF------DPINVDV-DRTVVALYKFLK 538 (586)
Q Consensus 517 ~~~------~~~~~~g-~~~~~~l~~~i~ 538 (586)
... ......+ ..+.+++++.++
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie 114 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIE 114 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHH
Confidence 220 0112233 235677776665
No 394
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.068 Score=40.65 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-----ccC-CCCcCcEEEEEeCCCc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----HRA-KSDGFPTILFFPAGNK 517 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~--~-----~~~-~i~~~Pt~~~~~~g~~ 517 (586)
++.|..+||++|++....|.+. .+.+..++...+. . ... +.+++|.+++ +|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence 6779999999999998888831 2444444444433 1 233 6799999664 5543
No 395
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.28 E-value=0.22 Score=47.34 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=24.5
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHH
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAK 478 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~ 478 (586)
+.+.+|+.|..+.|++|+++.+.+..+.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45678999999999999999988877654
No 396
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.98 E-value=0.73 Score=42.51 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCCeEEEeCcc---hhHHhhccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 007882 431 NDGDVKIVVGNN---FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 492 (586)
Q Consensus 431 ~~~~v~~l~~~~---f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id 492 (586)
++..+..+++.+ +-+++ ..++|.||.|.+-.||+-+.-.+.|+++++++.+..++.++.|.
T Consensus 80 Pns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred CCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 367788888877 33443 67899999999999999999999999999999876556665554
No 397
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=93.76 E-value=1.3 Score=36.74 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=50.0
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCC----CCcEEEEEeCCeeeeecCCCCH
Q 007882 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ----GFPTIYFFVDGQHKAYNGGRTK 188 (586)
Q Consensus 113 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~Pt~~~~~~g~~~~~~g~~~~ 188 (586)
-++.++.|.|+=|......++ . ..+.+-.+..++-..+-++++|. +--|.+ .+|.. ..|....
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~--~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy~--vEGHVPa 93 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------A--NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGYY--VEGHVPA 93 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------h--CCcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCEE--EeccCCH
Confidence 478899999999998766554 2 14677777776777788888875 333332 34532 3466778
Q ss_pred HHHHHHHHHhc
Q 007882 189 DAIVTWIKKKI 199 (586)
Q Consensus 189 ~~l~~~i~~~~ 199 (586)
+.|..++...-
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 88888876543
No 398
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.76 E-value=0.11 Score=45.09 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=27.2
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 481 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 481 (586)
.+.+|+.|+.++|++|+.+.|.+.++...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 5678999999999999999999999887653
No 399
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.58 E-value=0.15 Score=40.44 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=35.7
Q ss_pred CCcEEEEEe----CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCCcCcEEEEEeCCCc
Q 007882 451 SKDVLLEIY----APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 451 ~~~~~v~f~----~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~------~~~~i~~~Pt~~~~~~g~~ 517 (586)
.++++|+-. ++||++|+++...|.+.. +.+..+|...+.. ..-+...+|.++ -+|+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g~~ 77 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKGEF 77 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCEE
Confidence 456666544 389999999998887742 3345566654432 123556899864 45544
No 400
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.51 E-value=0.13 Score=40.29 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=35.3
Q ss_pred CCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCCcCcEEEEEeCCCc
Q 007882 451 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 451 ~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~------~~~~i~~~Pt~~~~~~g~~ 517 (586)
+++++|+-.+ +||++|+.+...|++.. +.+..+|...+.. ...+-.++|.+ |-+|+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 4566665443 79999999998887753 3344445443332 12356789997 446654
No 401
>PRK10638 glutaredoxin 3; Provisional
Probab=93.20 E-value=0.18 Score=38.67 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-c-----ccCCCCcCcEEEEEeCCCc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-H-----HRAKSDGFPTILFFPAGNK 517 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~-~-----~~~~i~~~Pt~~~~~~g~~ 517 (586)
++.|..+||++|++++..+++. + +.+..+|++.+. . ..-+...+|+++ -+|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g---i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G---VSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C---CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 6678899999999999888863 2 344455555443 1 123567899874 35544
No 402
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.09 E-value=0.049 Score=51.54 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=66.9
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc---cccCCCCcCcEEEEEeCCCcccCccccccc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---HHRAKSDGFPTILFFPAGNKSFDPINVDVD 527 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~---~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~ 527 (586)
..++-+.||+.||+..+..+|.++-....+.. +....++..... ...+++.+.|++.+....-. .+|.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~----~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCP----ASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccccc----hhhccc
Confidence 45788999999999999999999998888764 333334433333 36889999999998755544 389999
Q ss_pred cCHHHHHHHHHhcCC
Q 007882 528 RTVVALYKFLKKNAS 542 (586)
Q Consensus 528 ~~~~~l~~~i~~~~~ 542 (586)
++..+|++|..+.+.
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999885
No 403
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.33 E-value=0.24 Score=45.42 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=57.0
Q ss_pred CCcEEEEEeC-CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------------------------------c
Q 007882 451 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H 499 (586)
Q Consensus 451 ~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~------------------------------~ 499 (586)
++.++|+||+ .||+.|....+.+.++.+++... ++.++.|+.+.... .
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 6788889995 78999999999999999998763 34444444432110 1
Q ss_pred cCCCC------cCcEEEEEe-CCCcccCcccc--ccccCHHHHHHHHHhcC
Q 007882 500 RAKSD------GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKNA 541 (586)
Q Consensus 500 ~~~i~------~~Pt~~~~~-~g~~~~~~~~~--~g~~~~~~l~~~i~~~~ 541 (586)
.|++. .+|+.+++. +|+.+. ...+ ...++.+++++.|...-
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~-~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQ-ITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHhhh
Confidence 24443 368888885 454331 1111 23578888888887544
No 404
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.22 E-value=0.32 Score=38.72 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=52.6
Q ss_pred CcchhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc------cccCCCC-cCcEEEE
Q 007882 440 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------HHRAKSD-GFPTILF 511 (586)
Q Consensus 440 ~~~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~------~~~~~i~-~~Pt~~~ 511 (586)
.++|++++.. .+++++|+=+++.|+-+......|++......+ .+.++.+|.-... +.+++|. .-|.+++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 3567776644 356788877999999999999999999988765 2677777765533 2578887 6699999
Q ss_pred EeCCCccc
Q 007882 512 FPAGNKSF 519 (586)
Q Consensus 512 ~~~g~~~~ 519 (586)
+++|+.+.
T Consensus 85 i~~g~~v~ 92 (105)
T PF11009_consen 85 IKNGKVVW 92 (105)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 99999864
No 405
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.09 E-value=0.42 Score=41.95 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.0
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 493 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~ 493 (586)
+.+.+|+.|+...|++|+.+.+.+.++.+++-+..++.+.-.+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 34678999999999999999999999999983334566665544
No 406
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=92.02 E-value=0.5 Score=42.10 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=65.0
Q ss_pred CeEEeC-hhhHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCc
Q 007882 94 DVVVLK-ERNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (586)
Q Consensus 94 ~v~~l~-~~~~~~~~~~~---~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (586)
.|++++ ++.|-..+.+. -..+|..|-+.-+-|-.+...+.=||.++.- +.|..|-.+ +....++|....+|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss-~~gas~~F~~n~lP 213 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSS-NTGASDRFSLNVLP 213 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeec-cccchhhhcccCCc
Confidence 466665 57788888643 4568889999999999999999999998866 899988754 34567888899999
Q ss_pred EEEEEeCCe
Q 007882 170 TIYFFVDGQ 178 (586)
Q Consensus 170 t~~~~~~g~ 178 (586)
|+.+|++|.
T Consensus 214 ~LliYkgGe 222 (273)
T KOG3171|consen 214 TLLIYKGGE 222 (273)
T ss_pred eEEEeeCCc
Confidence 999999994
No 407
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.86 E-value=0.4 Score=49.25 Aligned_cols=51 Identities=12% Similarity=0.346 Sum_probs=36.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHH---HHHH---------cCCCCCcEEEE
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE---LAHE---------YDVQGFPTIYF 173 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~---------~~i~~~Pt~~~ 173 (586)
++.|..+|||+|++....|.+. ++.+-.+|+++++. +.++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999998777652 36667777776653 2222 36778999855
No 408
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=0.53 Score=50.03 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=65.5
Q ss_pred CCeEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHH---HHHHHHHhhcCCCceEEEEEeCCCcHHHHHHc------
Q 007882 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPE---YAAAATELKSANESVVLAKVDATEENELAHEY------ 163 (586)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~---~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~------ 163 (586)
-+...-+.+-|..+-..++|+||-+-.+||..|+.+..+ =.++|+.++. .++-++||.++-+++-+.|
T Consensus 26 V~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 26 VDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred ccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhhccCHHHHHHHHHHH
Confidence 345667889999999999999999999999999987763 2356666766 7899999998877665554
Q ss_pred --CCCCCcEEEEE-eCCee
Q 007882 164 --DVQGFPTIYFF-VDGQH 179 (586)
Q Consensus 164 --~i~~~Pt~~~~-~~g~~ 179 (586)
|-.++|-++|. .+|++
T Consensus 103 ~tG~GGWPLtVfLTPd~kP 121 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGKP 121 (667)
T ss_pred hccCCCCceeEEECCCCce
Confidence 35589987777 47754
No 409
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=91.66 E-value=2.1 Score=38.77 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=29.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEe
Q 007882 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD 152 (586)
Q Consensus 113 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd 152 (586)
+|..|+..-||+|-...+.+.++.+.+.+ ..|.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~--~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD--VEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT--CEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CcEEEeccc
Confidence 47789999999999999999999998833 345554443
No 410
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.56 Score=37.49 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=37.5
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--c----c-CCCCcCcEEEEEeCCCcc
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----R-AKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~----~-~~i~~~Pt~~~~~~g~~~ 518 (586)
-+|.|..+||+.|+++...|.+ +. ....++.+|...+.. + + -+.+.+|.++ -+|+-+
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF--I~Gk~i 78 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF--IGGKFI 78 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE--ECCEEE
Confidence 3455999999999998888877 22 246677777765432 1 1 2456899855 466543
No 411
>PRK10824 glutaredoxin-4; Provisional
Probab=91.16 E-value=0.4 Score=39.19 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=35.6
Q ss_pred CCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEEEEeCCCcc
Q 007882 451 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFPAGNKS 518 (586)
Q Consensus 451 ~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~----~~~~i~~~Pt~~~~~~g~~~ 518 (586)
..+|+|+-.. |||++|+++...|.++.- .+..+.++.+.... ..-+-..+|.++ -+|+.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i------~~~~idi~~d~~~~~~l~~~sg~~TVPQIF--I~G~~I 81 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGE------RFAYVDILQNPDIRAELPKYANWPTFPQLW--VDGELV 81 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCC------CceEEEecCCHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 4566665444 699999999998887631 23344554432211 122567889855 466554
No 412
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.97 E-value=0.36 Score=43.19 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=29.7
Q ss_pred cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 007882 450 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 482 (586)
Q Consensus 450 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 482 (586)
+.+..|+.|+...|++|+.+.+.+..+.+++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 467899999999999999999999999998755
No 413
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.29 E-value=4.6 Score=32.60 Aligned_cols=89 Identities=11% Similarity=0.210 Sum_probs=62.5
Q ss_pred ChhhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007882 99 KERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 99 ~~~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (586)
+.++++.++... +.++|-|+..--. .....|.++|..+.+ .+.|+... +..+..++++. .|.+++|+.-
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~ 76 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTF---DSEIFKSLKVS-PGQLVVFQPE 76 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEEC---hHHHHHhcCCC-CCceEEECcH
Confidence 456677877666 7888888876433 456678899998866 57886654 34677888875 5778888422
Q ss_pred --------eeeeecCC-CCHHH-HHHHHHH
Q 007882 178 --------QHKAYNGG-RTKDA-IVTWIKK 197 (586)
Q Consensus 178 --------~~~~~~g~-~~~~~-l~~~i~~ 197 (586)
....|.|. .+.+. |.+||+.
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 44678877 56655 9999864
No 414
>PRK09810 entericidin A; Provisional
Probab=89.57 E-value=0.32 Score=31.03 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=14.5
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhhc
Q 007882 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~~~ 25 (586)
|+||.++++ ++.+++|+||.....
T Consensus 1 mMkk~~~l~-~~~~~~L~aCNTv~G 24 (41)
T PRK09810 1 MMKRLIVLV-LLASTLLTGCNTARG 24 (41)
T ss_pred ChHHHHHHH-HHHHHHHhhhhhccc
Confidence 655555444 455567899966543
No 415
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.67 E-value=0.59 Score=48.06 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=36.1
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--c---c---------CCCCcCcEEEEEeCCCc
Q 007882 454 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R---------AKSDGFPTILFFPAGNK 517 (586)
Q Consensus 454 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~---~---------~~i~~~Pt~~~~~~g~~ 517 (586)
.|+.|..+||++|+++...|.+. + +.+-.+|++.+.. . + .+.+++|++++ +|+.
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~-----g---i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ 70 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN-----D---IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH 70 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC-----C---CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE
Confidence 37789999999999998888773 2 4455555554331 1 1 25678999855 5543
No 416
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=88.28 E-value=0.38 Score=26.99 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHHHhhhhh
Q 007882 3 TRYILLLSLTILLLFSPAL 21 (586)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~ 21 (586)
+|++++ +++.++.|+||+
T Consensus 7 mKkil~-~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILF-PLLALFMLAGCS 24 (25)
T ss_pred HHHHHH-HHHHHHHHhhcc
Confidence 344443 344556789995
No 417
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=88.14 E-value=1.6 Score=38.92 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=41.7
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc---HHHHHHc
Q 007882 109 NNKFVMVEFYAPWCG-HCQALAPEYAAAATELKSANESVVLAKVDATEE---NELAHEY 163 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~-~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~ 163 (586)
.|++++|.|.-+.|+ .|-.....+.++.+++...+.++.++.|.++-. ++..++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 689999999999996 799999999999999887655677777766633 4444444
No 418
>COG5510 Predicted small secreted protein [Function unknown]
Probab=87.60 E-value=0.61 Score=29.78 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=13.3
Q ss_pred CcchhHHHHHHH--HHHHhhhhhhhh
Q 007882 1 MSTRYILLLSLT--ILLLFSPALAKS 24 (586)
Q Consensus 1 M~~~~~~~~~~~--~~l~~~~~~~~~ 24 (586)
|+||.++++.++ ..+++++|....
T Consensus 1 mmk~t~l~i~~vll~s~llaaCNT~r 26 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACNTMR 26 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 566644443333 336788995544
No 419
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=85.65 E-value=11 Score=29.47 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=51.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC--eeeeecCCCC
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG--QHKAYNGGRT 187 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g--~~~~~~g~~~ 187 (586)
+++.++.|..+. ..|......++++++. .+ ++.+-..+... ..|++.+..+| ..++|.|...
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~l-Sd---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASL-SD---KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHh-CC---ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 556677777655 8888888888877754 33 46654433211 46999998877 3489999888
Q ss_pred HHHHHHHHHHh
Q 007882 188 KDAIVTWIKKK 198 (586)
Q Consensus 188 ~~~l~~~i~~~ 198 (586)
-..+..+|...
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 88888887654
No 420
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=84.26 E-value=17 Score=28.86 Aligned_cols=88 Identities=10% Similarity=-0.010 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCC-cCcEEEEEeCCCcccCccc
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFPTILFFPAGNKSFDPIN 523 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~------~~~~i~-~~Pt~~~~~~g~~~~~~~~ 523 (586)
+...+|-|-.+-.+.-.++.+.++++|+....++++.++.||-+.-.. ..|+|. .-|.+=+..-...- .+-
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdad--SvW 97 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDAD--SVW 97 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEeccccc--cee
Confidence 356788888889999999999999999999888899999999887553 345554 34887777443321 112
Q ss_pred cc--c---ccCHHHHHHHHHhc
Q 007882 524 VD--V---DRTVVALYKFLKKN 540 (586)
Q Consensus 524 ~~--g---~~~~~~l~~~i~~~ 540 (586)
+. + ..+.++|..||+..
T Consensus 98 ~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 98 MEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred EecccccccCcHHHHHHHHHhh
Confidence 22 2 36899999999864
No 421
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=84.08 E-value=6.3 Score=29.00 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=50.9
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007882 112 FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 112 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (586)
+.+..|-+..-+-+.+....+.++.+.+.+ ..+.+=.||..+++.+++.++|-..||++=..
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 356666677778889999999999888763 37899999999999999999999999976443
No 422
>PRK15396 murein lipoprotein; Provisional
Probab=83.91 E-value=0.9 Score=33.92 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=14.9
Q ss_pred CcchhHHHHHHHH-HHHhhhhhhh
Q 007882 1 MSTRYILLLSLTI-LLLFSPALAK 23 (586)
Q Consensus 1 M~~~~~~~~~~~~-~l~~~~~~~~ 23 (586)
|+++++++..+++ +++|+||++.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 7666665544444 5678999765
No 423
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=83.86 E-value=0.89 Score=34.35 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.2
Q ss_pred CcchhHHHHHHHHHHHhhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALAK 23 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~ 23 (586)
||++.++...++.+++|+||++.
T Consensus 1 mk~klll~aviLs~~LLaGCAs~ 23 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVNE 23 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCCc
Confidence 77666665555556788999776
No 424
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.70 E-value=7.6 Score=36.77 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=27.0
Q ss_pred HHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHHHHh
Q 007882 158 ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 158 ~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~ 198 (586)
.++.++|+.+.||+++-. + .+.|..+.+.|.+.|...
T Consensus 206 ~~a~~~gv~gTPt~~v~~-~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNG-K---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEECC-e---eecCCCCHHHHHHHHHHh
Confidence 456678999999986643 2 677877888888777654
No 425
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=83.57 E-value=1.1 Score=29.54 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=13.8
Q ss_pred CcchhHHH--HHHHHHHHhhhhhhhhc
Q 007882 1 MSTRYILL--LSLTILLLFSPALAKSQ 25 (586)
Q Consensus 1 M~~~~~~~--~~~~~~l~~~~~~~~~~ 25 (586)
|+||.+.+ +++++++.++||.....
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~CnTv~G 27 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTACNTTRG 27 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 66565543 22333466899965543
No 426
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=83.15 E-value=13 Score=29.15 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=50.4
Q ss_pred CCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007882 451 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 529 (586)
Q Consensus 451 ~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~ 529 (586)
.++| ++.|..+. ..|..+...+++++..-. ++.+-..+... ..|++.+..+|+. ..++|.|-..
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~---------~~P~~~i~~~~~~--~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE---------RKPSFSINRPGED--TGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC---------CCCEEEEecCCCc--ccEEEEecCC
Confidence 3454 55555555 899999999999987632 35443333211 4799999877743 3579999888
Q ss_pred HHHHHHHHHh
Q 007882 530 VVALYKFLKK 539 (586)
Q Consensus 530 ~~~l~~~i~~ 539 (586)
=.++..||..
T Consensus 83 GhEf~Slila 92 (94)
T cd02974 83 GHEFTSLVLA 92 (94)
T ss_pred chhHHHHHHH
Confidence 7888888754
No 427
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=83.12 E-value=1.6 Score=40.28 Aligned_cols=32 Identities=31% Similarity=0.731 Sum_probs=27.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcC
Q 007882 451 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRG 482 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~ 482 (586)
+++.||.|+.-.|++|..+.+.+ ..+.+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 46779999999999999999876 777777765
No 428
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=82.97 E-value=5.9 Score=30.32 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=60.5
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCH
Q 007882 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (586)
Q Consensus 111 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (586)
.+++=.|.|.--+-+++....+.++.+.+.. | .+.+=.||..+++.+++.++|-..||++=...+-..+..|.++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-G-VYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-C-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccccc
Confidence 4667778888889999999999999887654 2 48888899999999999999999999765555555566776543
No 429
>PRK09301 circadian clock protein KaiB; Provisional
Probab=82.43 E-value=6 Score=31.31 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCH
Q 007882 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (586)
Q Consensus 110 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (586)
+.++|=.|.|.--+-+++....+.++.+.+.. + .+.+=.||..+++.+++.++|-..||++=...+-..+..|.++.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-G-VYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-C-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeeccccc
Confidence 46778888999999999999999999887655 2 48888899999999999999999999765555555667786643
No 430
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=80.98 E-value=4.7 Score=34.64 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=35.0
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHH----HHHHcCC----CCCcEEEE
Q 007882 114 MVEFYAP------WCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDV----QGFPTIYF 173 (586)
Q Consensus 114 lv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i----~~~Pt~~~ 173 (586)
+|.|.++ +|++|+.....|... +|.|-.+|.+.+.+ +.+.++. ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566777 899999998777643 36777788877654 3344444 67888754
No 431
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=78.70 E-value=21 Score=32.01 Aligned_cols=89 Identities=24% Similarity=0.327 Sum_probs=58.7
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC--------------------------CcHHHHHH
Q 007882 110 NKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDAT--------------------------EENELAHE 162 (586)
Q Consensus 110 ~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--------------------------~~~~l~~~ 162 (586)
++++++.|| ++.-+-|-.+...|.+.+.+++..|..|..+.+|.. ...++|+.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 467777776 567778888999999999999986655555555531 13378899
Q ss_pred cCCCC------CcEEEEEe-CCee--e-eec--CCCCHHHHHHHHHHh
Q 007882 163 YDVQG------FPTIYFFV-DGQH--K-AYN--GGRTKDAIVTWIKKK 198 (586)
Q Consensus 163 ~~i~~------~Pt~~~~~-~g~~--~-~~~--g~~~~~~l~~~i~~~ 198 (586)
||+.. +=.+++++ +|.+ . .|. -+++.+.+.+-+...
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 98753 22466665 6722 1 222 257888887777654
No 432
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=78.38 E-value=12 Score=27.29 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=35.8
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-HHHHHHcCCCCCcEEEEEeCCe
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIYFFVDGQ 178 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~ 178 (586)
+.|+.+||+.|++.+-.+.+. |..+.+..||.... .++.+......+|++.. .+|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~ 58 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-------GITVELREVELKNKPAEMLAASPKGTVPVLVL-GNGT 58 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCc
Confidence 457889999999886555432 23466666765433 45555556778999843 3453
No 433
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=77.72 E-value=18 Score=26.76 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=42.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe--CCeeeeecCCCCHHHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV--DGQHKAYNGGRTKDAI 191 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~--~g~~~~~~g~~~~~~l 191 (586)
+..|+.++|+.|++.+-.+.... ..+.+..+|......+ +.-+-..+|++..=. +|.. -.....|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g-------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~-----l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG-------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ-----LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-------CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE-----EEcHHHH
Confidence 45678899999999985554321 2233333443222333 334556899886532 2322 1256778
Q ss_pred HHHHHHhcC
Q 007882 192 VTWIKKKIG 200 (586)
Q Consensus 192 ~~~i~~~~~ 200 (586)
.+|+.+.++
T Consensus 69 ~~yL~~~~~ 77 (77)
T cd03040 69 ISTLKTYLG 77 (77)
T ss_pred HHHHHHHcC
Confidence 888877653
No 434
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=76.59 E-value=6.4 Score=36.95 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=36.7
Q ss_pred ccCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEE
Q 007882 449 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFF 512 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~i~~~Pt~~~~ 512 (586)
.++++.+++..+.||+.|...+=.+-.+..++... .+....-|.... -..+|++.|.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~~d~------~pn~Ptl~F~ 112 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDPYDN------YPNTPTLIFN 112 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCcccC------CCCCCeEEEe
Confidence 56899999999999999988776665555666552 344443333221 1245666654
No 435
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=76.35 E-value=5.2 Score=36.79 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=40.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCC-ceEEEEEeCCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANE-SVVLAKVDATE 155 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~-~v~~~~vd~~~ 155 (586)
.|.++||-+-..+|..|..-...|+.|..++...|. +|.|+.||-..
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 578999999999999999999999999999887654 79999999543
No 436
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=75.94 E-value=29 Score=25.57 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=50.0
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-HHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHH
Q 007882 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTW 194 (586)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~ 194 (586)
.++.++|+.|++..-.+.. ++ ..+.+..++..+. ..+.+...-..+|++. .+|... .+...|.+|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~--i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l-----~dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KG--IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL-----TDSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HT--EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE-----ESHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cC--CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE-----eCHHHHHHH
Confidence 3678999999998755543 22 2466667776553 5566666778899996 557533 267888899
Q ss_pred HHHhcCCC
Q 007882 195 IKKKIGPG 202 (586)
Q Consensus 195 i~~~~~~~ 202 (586)
+.+..+.+
T Consensus 67 L~~~~~~~ 74 (75)
T PF13417_consen 67 LEERYPGP 74 (75)
T ss_dssp HHHHSTSS
T ss_pred HHHHcCCC
Confidence 98876543
No 437
>PRK13792 lysozyme inhibitor; Provisional
Probab=74.55 E-value=1.9 Score=35.76 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=16.0
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhhc
Q 007882 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~~~ 25 (586)
||+. ++++++.+.++|+||++...
T Consensus 1 mk~~-l~~ll~~~~~lLsaCs~~~~ 24 (127)
T PRK13792 1 MKKA-LWLLLAAVPVVLVACGGSDD 24 (127)
T ss_pred ChhH-HHHHHHHHHhheecccCCCC
Confidence 7744 44555556678999977654
No 438
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.42 E-value=2.8 Score=33.73 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=17.8
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 007882 455 LLEIYAPWCGHCQAFEPTYNK 475 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~ 475 (586)
+..|+.|+|+.|+++...|++
T Consensus 1 i~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH
Confidence 357999999999998888776
No 439
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=73.34 E-value=6.5 Score=33.80 Aligned_cols=53 Identities=8% Similarity=0.177 Sum_probs=33.6
Q ss_pred EEEEeCC------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--c----cCCC----CcCcEEEEEeCCCc
Q 007882 455 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKS----DGFPTILFFPAGNK 517 (586)
Q Consensus 455 ~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~----~~~i----~~~Pt~~~~~~g~~ 517 (586)
||.|+++ +|++|+.++..|+.. .|.+-.+|++.+.. + .++- ..+|.+++ +|+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEE
Confidence 4567777 999999999888764 25566666655432 1 1222 67888553 5543
No 440
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=73.15 E-value=2.8 Score=33.68 Aligned_cols=83 Identities=6% Similarity=0.067 Sum_probs=44.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccc---c-CCCCcCcEEEEEeCCCcccCcccc--cccc
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH---R-AKSDGFPTILFFPAGNKSFDPINV--DVDR 528 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~---~-~~i~~~Pt~~~~~~g~~~~~~~~~--~g~~ 528 (586)
+..|+.++|+.|+.....|++. + -.+.++++..+..... . .+-.+.+.--++......++.... ....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~-i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~l 74 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----G-IEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDEL 74 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----C-CCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCC
Confidence 3579999999999998887763 2 1344444443322221 1 122232232333222221111111 2456
Q ss_pred CHHHHHHHHHhcCCC
Q 007882 529 TVVALYKFLKKNASI 543 (586)
Q Consensus 529 ~~~~l~~~i~~~~~~ 543 (586)
+.++++++|.++...
T Consensus 75 s~~e~~~~l~~~p~L 89 (105)
T cd02977 75 SDEEALELMAEHPKL 89 (105)
T ss_pred CHHHHHHHHHhCcCe
Confidence 889999999887653
No 441
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=72.95 E-value=3.5 Score=32.33 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=6.2
Q ss_pred CcchhHHHHHHH
Q 007882 1 MSTRYILLLSLT 12 (586)
Q Consensus 1 M~~~~~~~~~~~ 12 (586)
|..|.+|||.|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 765555544433
No 442
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=72.43 E-value=27 Score=25.89 Aligned_cols=71 Identities=8% Similarity=0.036 Sum_probs=39.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc----HHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~ 189 (586)
+..++.++|+.|++.+-.+.+.. +.+-.+++... .++.+..+-..+|+++.-.+|.. .....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g---------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE---------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC---------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHH
Confidence 34677889999998876555432 33333444332 23434345568998743223422 12456
Q ss_pred HHHHHHHHh
Q 007882 190 AIVTWIKKK 198 (586)
Q Consensus 190 ~l~~~i~~~ 198 (586)
.|.+|+.+.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 777777653
No 443
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=71.76 E-value=1.9 Score=27.61 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=11.5
Q ss_pred CcchhHHHHHHHHHHHhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPAL 21 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~ 21 (586)
|||..+++++ ++.++|+||-
T Consensus 1 MkKi~~~~i~-~~~~~L~aCQ 20 (46)
T PF02402_consen 1 MKKIIFIGIF-LLTMLLAACQ 20 (46)
T ss_pred CcEEEEeHHH-HHHHHHHHhh
Confidence 7744444333 3347789993
No 444
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=71.23 E-value=17 Score=34.02 Aligned_cols=87 Identities=13% Similarity=0.155 Sum_probs=58.2
Q ss_pred CCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcCCCc----EEEEEEeCCccccc-------c------------------
Q 007882 451 SKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVDS----IVIAKMDGTTNEHH-------R------------------ 500 (586)
Q Consensus 451 ~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~~~----i~~~~id~~~~~~~-------~------------------ 500 (586)
++.++++|.-+.||. |-.....+.++...+..... =.|+.+|-+.+..+ +
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 688999999999998 88777777777776665432 36889988665431 1
Q ss_pred ---CCCC--cCc-----------EEEEE---eCCCcccCcccccc-ccCHHHHHHHHHhcC
Q 007882 501 ---AKSD--GFP-----------TILFF---PAGNKSFDPINVDV-DRTVVALYKFLKKNA 541 (586)
Q Consensus 501 ---~~i~--~~P-----------t~~~~---~~g~~~~~~~~~~g-~~~~~~l~~~i~~~~ 541 (586)
|.|. ..| ++++| |.|+-+ .|.| .++.++|.+-|.++.
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fv----d~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFV----DYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCccee----hhhcccCCHHHHHHHHHHHH
Confidence 1111 101 35555 566665 6777 778899988887764
No 445
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=71.11 E-value=20 Score=34.66 Aligned_cols=150 Identities=11% Similarity=0.018 Sum_probs=82.9
Q ss_pred CcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhc----ccCCeEEEEEecCC
Q 007882 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVL----TSETKVVLGYLNSL 230 (586)
Q Consensus 155 ~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~----~~~~~~~i~~~~~~ 230 (586)
-.++.+++++|.-+|-.+.+.+..... .-..+.+.+.+.+...-..+.+..-++.++.++. ...+.+++....+.
T Consensus 11 l~~~~~~~~~I~vvPl~I~~~~~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~iSs~ 89 (275)
T TIGR00762 11 LPPELIEEYGITVVPLTVIIDGKTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHLSSG 89 (275)
T ss_pred CCHHHHHHcCCEEEEEEEEECCEEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence 347788999999999888775323322 2247888998888763322222333445544443 34555555655665
Q ss_pred CCcchHHHHHhccccCceeEEecCChhHHHhcCCCCCCCCCeeEEeccCCcceecccCCCChhHHHHHHHhcCCCceeec
Q 007882 231 VGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIF 310 (586)
Q Consensus 231 ~~~~~~~f~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~l 310 (586)
-+..+.....+++...+..+..+.+..+....+.- +.... .....-.+.+++.+|+..........+
T Consensus 90 lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~---------v~~a~----~~~~~G~s~~eI~~~l~~~~~~~~~~f 156 (275)
T TIGR00762 90 LSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL---------VLEAA----KLAEEGKSLEEILAKLEELRERTKLYF 156 (275)
T ss_pred hhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH---------HHHHH----HHHHcCCCHHHHHHHHHHHHhhcEEEE
Confidence 56667776666654444455555555443333310 01100 001112367888888887765544444
Q ss_pred CCCccccc
Q 007882 311 TRENAPSV 318 (586)
Q Consensus 311 t~~~~~~~ 318 (586)
..+++..+
T Consensus 157 ~v~~L~~L 164 (275)
T TIGR00762 157 VVDTLEYL 164 (275)
T ss_pred EECcHHHH
Confidence 44444444
No 446
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=68.85 E-value=3.7 Score=33.56 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=15.8
Q ss_pred CcchhHHHHHHHHHHHhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALA 22 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~ 22 (586)
|+++.+++++++++++|+||+.
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~ 22 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCST 22 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCC
Confidence 7777666555666678899964
No 447
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=68.79 E-value=4.9 Score=27.27 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=15.0
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALAKS 24 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~~ 24 (586)
||+-...++.++.|+.|+||+..+
T Consensus 1 mk~~~~s~~ala~l~sLA~CG~KG 24 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCGLKG 24 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhcccCC
Confidence 554444445555567889997754
No 448
>PHA03075 glutaredoxin-like protein; Provisional
Probab=68.72 E-value=5.1 Score=32.16 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=26.1
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 007882 452 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 481 (586)
Q Consensus 452 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 481 (586)
+.+++.|.-|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 468999999999999999999988877654
No 449
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.65 E-value=1.3e+02 Score=29.95 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=97.3
Q ss_pred cchhhHHHHHHHHHHhccCceEEEEEECCCcccccccccccCccCCCCceEEEecCCCCCcccCCCCCCHHHHHHHHHHH
Q 007882 334 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 413 (586)
Q Consensus 334 ~~~~~~~~~l~~lA~~~~~~~~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~ 413 (586)
..+++.+..+.++|..- +++.+-..+ +....|.+.+-.++...--.|.+-.--..+..++...
T Consensus 31 ~~s~~~~~ll~eia~~S-~kis~~~~~----------------~~~RkpSF~i~r~g~~~gv~FAglPlGHEftSlVLaL 93 (520)
T COG3634 31 EKSKEIKELLDEIASLS-DKISLEEDS----------------DLVRKPSFSINRPGEDQGVRFAGLPLGHEFTSLVLAL 93 (520)
T ss_pred cccHHHHHHHHHHHhhc-cceeeeecC----------------ccccCCceeecCCCcccceEEecCcccchHHHHHHHH
Confidence 44667778888888644 444443221 0123577766666654444455544444455555555
Q ss_pred hcCCCCCCCCCCCCCCCCCCCeEEEeCcchhHHhhc-cCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 007882 414 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 492 (586)
Q Consensus 414 ~~gkl~~~~ks~~~~~~~~~~v~~l~~~~f~~~v~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id 492 (586)
+.=.=+ +| .+.. ..-+.+.+ .+..-+=-|++-.|..|-..-..++-++-.- +++.-..||
T Consensus 94 lqv~G~-------pp--------k~~q-~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlN---p~I~H~~Id 154 (520)
T COG3634 94 LQVGGH-------PP--------KEDQ-DVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLN---PRIKHTAID 154 (520)
T ss_pred HHhcCC-------CC--------chhH-HHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcC---CCceeEEec
Confidence 431111 11 1122 22222322 3344566677889999988888877766542 357777777
Q ss_pred CCc--cccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhc
Q 007882 493 GTT--NEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 540 (586)
Q Consensus 493 ~~~--~~~~~~~i~~~Pt~~~~~~g~~~~~~~~~~g~~~~~~l~~~i~~~ 540 (586)
-.. ++.+.-+|.++||+ |.+|+. .-.|..+.++|+.-|...
T Consensus 155 Ga~Fq~Evear~IMaVPtv--flnGe~-----fg~GRmtleeilaki~~g 197 (520)
T COG3634 155 GALFQDEVEARNIMAVPTV--FLNGEE-----FGQGRMTLEEILAKIDTG 197 (520)
T ss_pred chhhHhHHHhccceecceE--EEcchh-----hcccceeHHHHHHHhcCC
Confidence 543 44566799999995 557776 357888999998887653
No 450
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.65 E-value=5.9 Score=42.46 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=54.9
Q ss_pred EEEeCcchhHHhhccCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCcccc-c--------cC-C
Q 007882 436 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-H--------RA-K 502 (586)
Q Consensus 436 ~~l~~~~f~~~v~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~i~~~~id~~~~~~-~--------~~-~ 502 (586)
.....+.|.+.- ..++|++|-...+||..|+.|...= .++|+.++. .++-++||-+..+. . -+ +
T Consensus 29 ~pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 29 YPWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred cccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 345566777754 6789999999999999999987432 455665554 68889999876542 1 12 2
Q ss_pred CCcCcEEEEE-eCCCcc
Q 007882 503 SDGFPTILFF-PAGNKS 518 (586)
Q Consensus 503 i~~~Pt~~~~-~~g~~~ 518 (586)
--+-|-.+|. |+|+..
T Consensus 106 ~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 106 QGGWPLTVFLTPDGKPF 122 (667)
T ss_pred CCCCceeEEECCCCcee
Confidence 3478965555 766653
No 451
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=68.40 E-value=14 Score=30.90 Aligned_cols=55 Identities=7% Similarity=0.011 Sum_probs=40.0
Q ss_pred EEEeCCccccccCCCCcCcEEEEEeCCC--------cccCccccccccCHHHHHHHHHhcCCC
Q 007882 489 AKMDGTTNEHHRAKSDGFPTILFFPAGN--------KSFDPINVDVDRTVVALYKFLKKNASI 543 (586)
Q Consensus 489 ~~id~~~~~~~~~~i~~~Pt~~~~~~g~--------~~~~~~~~~g~~~~~~l~~~i~~~~~~ 543 (586)
+.+.++.....+|+|+.+|++++.+++. .........|..+.+.-++.+.+....
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~~ 117 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGDS 117 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCCC
Confidence 5666777777999999999999998774 000112556888998888888866543
No 452
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=68.12 E-value=6.2 Score=35.26 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=24.8
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEE
Q 007882 457 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 489 (586)
Q Consensus 457 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~ 489 (586)
+|..|.|++|-.+.|.|.++...+...-.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 689999999999999999999999874334443
No 453
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=67.35 E-value=22 Score=25.74 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=33.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC----cHHHHHHcCCCCCcEEEE
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 173 (586)
..|+.++|+.|++.+-.+.... ..+....++... ..++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~-------l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG-------IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC-------CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 4578889999999887665432 234445555422 234555556668999864
No 454
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=67.18 E-value=73 Score=27.42 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=78.3
Q ss_pred eEEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-----------HHHHH-H
Q 007882 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------NELAH-E 162 (586)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~l~~-~ 162 (586)
+..+++..+.-.--+|+++||.=.|+-|+.--+. ..|+.|+++|++. ++.++..-|..- ..+|+ .
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 3444444444333478999998999999987655 5788999999884 488888888532 24554 4
Q ss_pred cCCCCCcEEEEEe-CCeeeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCc
Q 007882 163 YDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGS 233 (586)
Q Consensus 163 ~~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~~~~~ 233 (586)
||| .+|.+--++ +|. +..-|-+|+....+.....-.-.-.+.+|+-..+.-||.-|.+...+
T Consensus 87 YgV-tFp~f~Ki~VnG~--------~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P 149 (162)
T COG0386 87 YGV-TFPMFSKIDVNGK--------NAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKP 149 (162)
T ss_pred cCc-eeeeeeEEeecCC--------CCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCCh
Confidence 676 467665554 552 23446667766653321000011356778877666677777665443
No 455
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=66.53 E-value=4.4 Score=35.75 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=17.4
Q ss_pred CcchhHHHHHHHHHHHhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALA 22 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~ 22 (586)
|.|.++++.+++++|+|+||++
T Consensus 1 mtk~k~~~~il~~al~l~GCs~ 22 (200)
T COG3417 1 MTKMKIYASILLLALFLSGCSS 22 (200)
T ss_pred CchHHHHHHHHHHHHHHhhccc
Confidence 7677777777777899999975
No 456
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=66.37 E-value=4.9 Score=32.72 Aligned_cols=81 Identities=14% Similarity=0.234 Sum_probs=43.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccccc----CCCCcCcEEEEEeCCCcccCcccccc---cc
Q 007882 456 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR----AKSDGFPTILFFPAGNKSFDPINVDV---DR 528 (586)
Q Consensus 456 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~----~~i~~~Pt~~~~~~g~~~~~~~~~~g---~~ 528 (586)
..|+.++|+.|++....|++- + -.+.+..+..+...... ++..+.|.--++.......+.....+ ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~-i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 75 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----G-VDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSL 75 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----C-CceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccccC
Confidence 568999999999988888762 2 13444444433322211 23334554445533322222112221 24
Q ss_pred CHHHHHHHHHhcCC
Q 007882 529 TVVALYKFLKKNAS 542 (586)
Q Consensus 529 ~~~~l~~~i~~~~~ 542 (586)
+.+++++.|.++..
T Consensus 76 s~~e~~~~l~~~p~ 89 (111)
T cd03036 76 SEEEALELLSSDGM 89 (111)
T ss_pred CHHHHHHHHHhCcC
Confidence 66778888877653
No 457
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=66.13 E-value=17 Score=25.70 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=32.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH--HHHHHcCCCCCcEEEE
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN--ELAHEYDVQGFPTIYF 173 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~Pt~~~ 173 (586)
..|+.++|+.|++..-.+.... ..+....++..... .+.+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKG-------LPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcC-------CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 3578889999998876665432 23455555543322 2444556778997753
No 458
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.08 E-value=6.7 Score=28.69 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=34.8
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH----------------HHHHHcCCCCCcEEEEEeCC
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----------------ELAHEYDVQGFPTIYFFVDG 177 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------~l~~~~~i~~~Pt~~~~~~g 177 (586)
+.|++--||.|..+..+|+++. +.+-.|++...- +-.+..|--++|.+.+ .+|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~ 73 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDG 73 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCC
Confidence 6799999999998888877654 333345544331 2234456668999865 555
No 459
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=65.60 E-value=20 Score=29.23 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007882 127 ALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (586)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (586)
.+.+....+.+-....+.. .+..-++.+.++|+|+.+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5666666665555442212 22223589999999999999999987
No 460
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=65.54 E-value=6.1 Score=33.28 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=17.7
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 007882 455 LLEIYAPWCGHCQAFEPTYNK 475 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~ 475 (586)
+..|+.++|+.|+++...|++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 567899999999998877765
No 461
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=65.15 E-value=13 Score=31.09 Aligned_cols=43 Identities=12% Similarity=0.276 Sum_probs=33.4
Q ss_pred cHHHHHHcCCCCCcEEEEEeCCe------------eeeecCCCCHHHHHHHHHHh
Q 007882 156 ENELAHEYDVQGFPTIYFFVDGQ------------HKAYNGGRTKDAIVTWIKKK 198 (586)
Q Consensus 156 ~~~l~~~~~i~~~Pt~~~~~~g~------------~~~~~g~~~~~~l~~~i~~~ 198 (586)
++.+.++|+|+.+|++++.+++. .....|..+.+.-.+.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 58999999999999999998663 45666777776666666544
No 462
>PRK11372 lysozyme inhibitor; Provisional
Probab=65.07 E-value=4.7 Score=32.62 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=14.4
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALAKS 24 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~~ 24 (586)
|.||.+++++ ++++|+||++..
T Consensus 1 ~~mk~ll~~~--~~~lL~gCs~~~ 22 (109)
T PRK11372 1 MSMKKLLIIC--LPVLLTGCSAYN 22 (109)
T ss_pred CchHHHHHHH--HHHHHHHhcCCc
Confidence 7788866443 345579997653
No 463
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=63.77 E-value=25 Score=31.23 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=38.2
Q ss_pred EEeCcchhHHhhccCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcCC-Cc--EEEEEEeCCcc
Q 007882 437 IVVGNNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGV-DS--IVIAKMDGTTN 496 (586)
Q Consensus 437 ~l~~~~f~~~v~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~-~~--i~~~~id~~~~ 496 (586)
.-++..+...- -.++.++|.|.-..|+. |-.+...+.++.+.+... .+ +.++.+|-..+
T Consensus 39 d~~G~~~~~~~-~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~D 101 (174)
T PF02630_consen 39 DQDGKTVTLDD-LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERD 101 (174)
T ss_dssp ETTSSEEEGGG-GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC
T ss_pred cCCCCEecHHH-hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCC
Confidence 33444455432 25789999998888865 998888888888877643 23 55555554443
No 464
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=63.61 E-value=6.5 Score=31.57 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=22.8
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE 155 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~ 155 (586)
..|+.++|+.|++....|.+. ++.|-.+|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH---------GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCCcEEEeecc
Confidence 568999999999998766642 35555566544
No 465
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=63.35 E-value=54 Score=28.83 Aligned_cols=89 Identities=21% Similarity=0.418 Sum_probs=59.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCC--------------------------CcHHHHH
Q 007882 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDAT--------------------------EENELAH 161 (586)
Q Consensus 109 ~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--------------------------~~~~l~~ 161 (586)
.++++++.|| ..+---|-.+.-.|...+.++...+..|..+.+|.. .+.++|+
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 5789888888 456556777888899989999887767777777753 2348899
Q ss_pred HcCCC----CCc--EEEEEe-CCeeee-----ecCCCCHHHHHHHHHH
Q 007882 162 EYDVQ----GFP--TIYFFV-DGQHKA-----YNGGRTKDAIVTWIKK 197 (586)
Q Consensus 162 ~~~i~----~~P--t~~~~~-~g~~~~-----~~g~~~~~~l~~~i~~ 197 (586)
.||+- +.+ -++++. +|...+ ..-+++.+...+.++.
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence 99874 444 445553 662221 2235666666666554
No 466
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=62.75 E-value=25 Score=25.49 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=36.8
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHH
Q 007882 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWI 195 (586)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i 195 (586)
.++.++|++|++.+-.+... + ..+....++-.......+..+-..+|++.. .+|... .....|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----g--l~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l-----~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----N--IPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM-----AESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----C--CCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe-----ehHHHHHHHH
Confidence 56788999999887666542 2 234444455433333333444567898742 335321 2345566655
No 467
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=62.63 E-value=14 Score=32.10 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=31.5
Q ss_pred CcEEEEEeCCCChhhhhh-hHHHHHHHHHhcCCCcE-EEEEEeCCccc
Q 007882 452 KDVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSI-VIAKMDGTTNE 497 (586)
Q Consensus 452 ~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~i-~~~~id~~~~~ 497 (586)
..+|++|.+.||+.|... .+.|.+...++...+ + .++-+..+...
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~~ 77 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDPF 77 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCHH
Confidence 445555567799999998 999999999987543 3 35555554433
No 468
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=61.82 E-value=7.4 Score=31.28 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=23.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE 156 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~ 156 (586)
..|+.+||+.|++....|.+- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~---------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR---------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCCeEEEecccC
Confidence 568999999999987666542 355555665544
No 469
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=61.70 E-value=22 Score=25.00 Aligned_cols=50 Identities=10% Similarity=0.002 Sum_probs=30.4
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEEE
Q 007882 456 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF 511 (586)
Q Consensus 456 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~----~~~~i~~~Pt~~~ 511 (586)
.+|+.++|+.|++.+-.++...- .+....++...... .......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 36888999999988877776521 24444454433221 2345668897653
No 470
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=61.44 E-value=1.6e+02 Score=28.34 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=48.6
Q ss_pred CCCCeEEeChhhHHHHHhCCCeEEEEEECCC-Chh-hhhhhHHHHHHHHHhhcCCC-ceEEEEEeCCCcHHHHHH----c
Q 007882 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPW-CGH-CQALAPEYAAAATELKSANE-SVVLAKVDATEENELAHE----Y 163 (586)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~~~~lv~f~a~w-C~~-C~~~~p~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~----~ 163 (586)
+......|++..-+-+-+=.+++-|.+|.+- -++ -....+.+..+.++|...+. ++.+-.||-+.++...++ +
T Consensus 5 T~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~ 84 (271)
T PF09822_consen 5 TANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEY 84 (271)
T ss_pred CCCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhc
Confidence 3445667777666655444556666555543 222 35566666777777766655 799999998776665555 8
Q ss_pred CCCC
Q 007882 164 DVQG 167 (586)
Q Consensus 164 ~i~~ 167 (586)
||..
T Consensus 85 Gi~~ 88 (271)
T PF09822_consen 85 GIQP 88 (271)
T ss_pred CCCc
Confidence 8776
No 471
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=61.04 E-value=5.9 Score=34.38 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=13.8
Q ss_pred CcchhHHHHHHHHHHHhhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALAK 23 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~ 23 (586)
||+.+++ +.+..+|+|+||+..
T Consensus 1 MK~~~~l-i~l~~~LlL~GCAg~ 22 (171)
T PRK13733 1 MKQISLL-IPLLGTLLLSGCAGT 22 (171)
T ss_pred CchhhHH-HHHHHHHHhccccCC
Confidence 7755544 334555779999753
No 472
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=59.99 E-value=16 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=24.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (586)
..|+.++|+.|++....|.+- ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecCCCh
Confidence 468899999999998777651 3666677776553
No 473
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=59.73 E-value=8 Score=21.58 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhhhh
Q 007882 10 SLTILLLFSPALAKS 24 (586)
Q Consensus 10 ~~~~~l~~~~~~~~~ 24 (586)
.+++++.++||+..+
T Consensus 5 ~~~~~~~LsgCG~KG 19 (24)
T PF13627_consen 5 LLALALALSGCGQKG 19 (24)
T ss_pred HHHHHHHHHhcccCC
Confidence 344567789996653
No 474
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=59.64 E-value=7.5 Score=31.98 Aligned_cols=78 Identities=13% Similarity=0.099 Sum_probs=42.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--ccC----CCCcCcEEEEE-eCCCcccCcccc---c
Q 007882 456 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGFPTILFF-PAGNKSFDPINV---D 525 (586)
Q Consensus 456 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~--~~~----~i~~~Pt~~~~-~~g~~~~~~~~~---~ 525 (586)
..|+.++|+.|+++...+++ .+ +.+-.+|...+.. .++ ...+...--++ +.|... +.... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~---i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~-k~l~~~~~~ 72 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NG---IEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSY-RALNTSNTF 72 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cC---CceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcch-hhCCchhhc
Confidence 46899999999999888877 22 3444444443322 111 11221111233 333332 22121 1
Q ss_pred cccCHHHHHHHHHhcCC
Q 007882 526 VDRTVVALYKFLKKNAS 542 (586)
Q Consensus 526 g~~~~~~l~~~i~~~~~ 542 (586)
...+.++++++|.++..
T Consensus 73 ~~ls~~e~~~~i~~~p~ 89 (117)
T TIGR01617 73 LDLSDKEALELLAEDPA 89 (117)
T ss_pred ccCCHHHHHHHHHhCcc
Confidence 34677888888888764
No 475
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.50 E-value=9.2 Score=32.20 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=17.7
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 007882 455 LLEIYAPWCGHCQAFEPTYNK 475 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~ 475 (586)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 567999999999998877765
No 476
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=59.46 E-value=18 Score=30.50 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=24.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH
Q 007882 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (586)
Q Consensus 114 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (586)
+..|+.+||+.|++....|.+- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~---------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH---------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCcEEeeccCCh
Confidence 4578899999999987655431 3566666665543
No 477
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=58.75 E-value=30 Score=31.78 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=41.7
Q ss_pred CcchhHHhhccCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhc-CCC---cEEEEEEeCCcccc
Q 007882 440 GNNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLR-GVD---SIVIAKMDGTTNEH 498 (586)
Q Consensus 440 ~~~f~~~v~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-~~~---~i~~~~id~~~~~~ 498 (586)
++.|...-+ .+++++|+|.-+.|+. |-.+...+..+.+++. ... .++++.+|-+.+..
T Consensus 57 G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp 119 (207)
T COG1999 57 GKPFTLKDL-KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTP 119 (207)
T ss_pred CCEeecccc-CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCH
Confidence 444444322 5889999998888887 9999999998888877 322 47777888776653
No 478
>PRK11616 hypothetical protein; Provisional
Probab=58.61 E-value=8.1 Score=30.75 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=16.5
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALAKS 24 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~~ 24 (586)
||+..+.++..+.+++++||++.-
T Consensus 1 ~~~~~~~~~~~~~~llLsGCgSim 24 (109)
T PRK11616 1 IRNVLLAFMICSGMLLLSGCSSVM 24 (109)
T ss_pred CcchhHHHHHHHHHHHhcccHhhH
Confidence 555556555566678899998754
No 479
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=58.59 E-value=24 Score=28.49 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC
Q 007882 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE 155 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~ 155 (586)
+|+++||.=-|+-|+.-. -...|.++.++++.. ++.++..=|..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 688988888899999988 667999999999873 58888888864
No 480
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=58.16 E-value=27 Score=32.90 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=38.0
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007882 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 108 ~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (586)
..||+.+++..+-|||.|-.++=.|--+..++.. +.+. -+..+. .-.-..+||+.|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn----~~l~-~~~S~~-----~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN----FSLE-YHYSDP-----YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC----eeeE-EeecCc-----ccCCCCCCeEEEec
Confidence 4789999999999999999987666655555543 4221 121111 11234789998875
No 481
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=57.92 E-value=8.2 Score=35.88 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=14.1
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhc
Q 007882 2 STRYILLLSLTILLLFSPALAKSQ 25 (586)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~ 25 (586)
++..+.+.+++++|+.+||+++..
T Consensus 4 ~~~~~i~~lll~lllva~C~~s~~ 27 (310)
T COG4594 4 KKTAIILTLLLLLLLVAACSSSDN 27 (310)
T ss_pred hhhHHHHHHHHHHHHHHHhcCcCc
Confidence 333344444455577789977744
No 482
>PHA03075 glutaredoxin-like protein; Provisional
Probab=57.66 E-value=19 Score=29.06 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=27.3
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeC
Q 007882 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA 153 (586)
Q Consensus 111 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~ 153 (586)
|.++|.|--|.|+-|......+.++..+ ..+..||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEEe
Confidence 4689999999999999998888665544 44555553
No 483
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.33 E-value=23 Score=32.68 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=33.8
Q ss_pred HHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHHHHHHhcCCCc
Q 007882 158 ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGI 203 (586)
Q Consensus 158 ~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~ 203 (586)
..+++.||+++||++| ...+...|..+.+.+...|.+.++...
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE---cCcEeecCCCCHHHHHHHHHHHHhccc
Confidence 4667899999999998 223456799999999999988876543
No 484
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=55.70 E-value=12 Score=30.68 Aligned_cols=82 Identities=11% Similarity=0.151 Sum_probs=42.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccccc----CCCCcCcEEEEEeCCCcccCccccc-cccC
Q 007882 455 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR----AKSDGFPTILFFPAGNKSFDPINVD-VDRT 529 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~----~~i~~~Pt~~~~~~g~~~~~~~~~~-g~~~ 529 (586)
+..|+.++|+.|++....|++. + -.+.+.++..+...... +...+.|.--++......++..... ...+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----g-i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ls 75 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----Q-IPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDELS 75 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCcccCC
Confidence 4578899999999988888773 2 13444544333222211 1222233333443332222211111 2457
Q ss_pred HHHHHHHHHhcCC
Q 007882 530 VVALYKFLKKNAS 542 (586)
Q Consensus 530 ~~~l~~~i~~~~~ 542 (586)
.+++++.|.++..
T Consensus 76 ~~e~i~~l~~~p~ 88 (115)
T cd03032 76 LSELIRLISEHPS 88 (115)
T ss_pred HHHHHHHHHhChh
Confidence 7888888887654
No 485
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=55.14 E-value=9.7 Score=29.69 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=8.5
Q ss_pred HHHHhhhhhhhh
Q 007882 13 ILLLFSPALAKS 24 (586)
Q Consensus 13 ~~l~~~~~~~~~ 24 (586)
.+++++||.+.+
T Consensus 12 ~~~L~~GCAsts 23 (96)
T PF11839_consen 12 AALLLAGCASTS 23 (96)
T ss_pred HHHHHhHccCCc
Confidence 457788997654
No 486
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=54.35 E-value=1.4e+02 Score=30.34 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCCeEEEEEECCCChhhhhhh-HHHH-HHHHHhhcCCCceEEEEEeCCCc--HHHHHHcCCCCCcEEEEEe-CC-eeeee
Q 007882 109 NNKFVMVEFYAPWCGHCQALA-PEYA-AAATELKSANESVVLAKVDATEE--NELAHEYDVQGFPTIYFFV-DG-QHKAY 182 (586)
Q Consensus 109 ~~~~~lv~f~a~wC~~C~~~~-p~~~-~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~-~g-~~~~~ 182 (586)
.++.+||.|-+.-......+. -.|. ......-. ..++.+.|+.... ..+..-|.+..+|+++|+. .| .....
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls--~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLS--KYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhh--cceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 456677777777666766665 2333 22222211 2466666765432 4566778899999999996 77 44677
Q ss_pred cCCCCHHHHHHHHHHhc
Q 007882 183 NGGRTKDAIVTWIKKKI 199 (586)
Q Consensus 183 ~g~~~~~~l~~~i~~~~ 199 (586)
.|....+.|..-|.+..
T Consensus 95 tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVW 111 (506)
T ss_pred eccccHHHHHHHHHHHH
Confidence 78888899988887765
No 487
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=53.81 E-value=56 Score=32.91 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=58.9
Q ss_pred ccCCcEEEEEeCCCChhhhhhh-HHHH-HHHHHhcCCCcEEEEEEeCCccccc----cCCCCcCcEEEEE-eCCCcccCc
Q 007882 449 DESKDVLLEIYAPWCGHCQAFE-PTYN-KLAKHLRGVDSIVIAKMDGTTNEHH----RAKSDGFPTILFF-PAGNKSFDP 521 (586)
Q Consensus 449 ~~~~~~~v~f~~~~C~~C~~~~-~~~~-~~~~~~~~~~~i~~~~id~~~~~~~----~~~i~~~Pt~~~~-~~g~~~~~~ 521 (586)
..++.++|.|.+......+.+. -.|. ...... ....++.++|+.....+. -|.+..+|+++|. ..|..+.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~-ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLe-- 92 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDS-LSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLE-- 92 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhh-hhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeE--
Confidence 3456788888888887777776 2332 322221 123688888888877764 4577899999888 5576664
Q ss_pred cccccccCHHHHHHHHHh
Q 007882 522 INVDVDRTVVALYKFLKK 539 (586)
Q Consensus 522 ~~~~g~~~~~~l~~~i~~ 539 (586)
...|..+.++|..-|.+
T Consensus 93 -vitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 93 -VITGFVTADELASSIEK 109 (506)
T ss_pred -EeeccccHHHHHHHHHH
Confidence 67787787777766554
No 488
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=53.42 E-value=49 Score=24.03 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=32.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC----cHHHHHHcCCCCCcEEE
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIY 172 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~ 172 (586)
..|+.++|+.|++.+-.+... |..+....+|... .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-------gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-------GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-------CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468899999999876555543 2245555566432 24555555667899994
No 489
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=53.29 E-value=8.7 Score=33.49 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhc
Q 007882 5 YILLLSLTILLLFSPALAKSQ 25 (586)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~ 25 (586)
++-+++++++|+|+||.+...
T Consensus 8 ~~~~l~~~laflLsgC~tiPk 28 (191)
T COG3065 8 KKGALIGTLAFLLSGCVTIPK 28 (191)
T ss_pred HHHHHHHHHHHHHhhcccCCh
Confidence 333344555678999977643
No 490
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=53.15 E-value=13 Score=30.28 Aligned_cols=52 Identities=25% Similarity=0.366 Sum_probs=30.8
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcH----HHHHHcCCCCCcEEEEEe
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYDVQGFPTIYFFV 175 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~ 175 (586)
..|+.++|+.|++....|.+- ++.|-.+|..+++ ++..-++..+.|..-+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 468899999999998766541 3556666665442 232222333445544554
No 491
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=52.61 E-value=22 Score=25.86 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=41.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCc-HHHHHHcCCCCCcEEEEEeCCeeeeecCCCCHHHHHH
Q 007882 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVT 193 (586)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~ 193 (586)
..|+.++|+.|++..-.+... |..+....+|.... +.+.+......+|++. .+|.. ......|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-------gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-----l~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-------GVSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV-----LYESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-------CCccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE-----EEcHHHHHH
Confidence 467889999999987665432 22344555554433 3455555567899763 34422 134566777
Q ss_pred HHHH
Q 007882 194 WIKK 197 (586)
Q Consensus 194 ~i~~ 197 (586)
|+.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7654
No 492
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=51.88 E-value=6.8 Score=29.75 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=43.3
Q ss_pred EECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007882 117 FYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (586)
Q Consensus 117 f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (586)
|=+.--+.+......+..+.+..-+ ..+.+-.||..+++.+++.++|-..||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~--~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLG--GRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCT--TTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCC--CcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 3344455667788888888876433 479999999999999999999999999753
No 493
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=51.43 E-value=32 Score=28.06 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeC
Q 007882 468 AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 514 (586)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~i~~~Pt~~~~~~ 514 (586)
.+.+.++.+.+........ +.+.++.....+|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4555555555544432222 67777888889999999999998877
No 494
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=50.49 E-value=15 Score=26.74 Aligned_cols=49 Identities=4% Similarity=0.031 Sum_probs=29.9
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc---ccCCCCcCcEEE
Q 007882 456 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTIL 510 (586)
Q Consensus 456 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~---~~~~i~~~Pt~~ 510 (586)
++|+.+||+.|++.+-.+++..- .+....+|...... .......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46789999999988766665322 34555666533211 122356889875
No 495
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=50.33 E-value=41 Score=25.10 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=8.2
Q ss_pred CcchhHHHHHHHHHH
Q 007882 1 MSTRYILLLSLTILL 15 (586)
Q Consensus 1 M~~~~~~~~~~~~~l 15 (586)
|.+|.++|.+|++.|
T Consensus 1 MaRRlwiLslLAVtL 15 (100)
T PF05984_consen 1 MARRLWILSLLAVTL 15 (100)
T ss_pred CchhhHHHHHHHHHH
Confidence 666666555444433
No 496
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.86 E-value=16 Score=30.78 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=17.1
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 007882 455 LLEIYAPWCGHCQAFEPTYNK 475 (586)
Q Consensus 455 ~v~f~~~~C~~C~~~~~~~~~ 475 (586)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457889999999997776665
No 497
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=49.71 E-value=12 Score=35.49 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=13.4
Q ss_pred CcchhHHHHHHHHHHHhhhhhh
Q 007882 1 MSTRYILLLSLTILLLFSPALA 22 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~ 22 (586)
|++.+.++++++++++++||+.
T Consensus 1 ~~~~~~~~~~~~~~~~lsgCs~ 22 (243)
T PRK10866 1 MTRMKYLVAAATLSLFLAGCSG 22 (243)
T ss_pred CchHHHHHHHHHHHHHHhhcCC
Confidence 6444444445555677899953
No 498
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=49.06 E-value=12 Score=33.71 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=13.8
Q ss_pred cchhHHHHHHHHHHHhhhhhhhh
Q 007882 2 STRYILLLSLTILLLFSPALAKS 24 (586)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~ 24 (586)
+|+...++++++.++|+||+...
T Consensus 4 ~~~~~~~l~~~As~LL~aC~~~~ 26 (206)
T COG3017 4 MKRLLFLLLALASLLLTACTLTA 26 (206)
T ss_pred HHHHHHHHHHHHHHHHHhccCcC
Confidence 34444445555567889996654
No 499
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=47.13 E-value=15 Score=35.18 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=16.1
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhhc
Q 007882 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (586)
Q Consensus 1 M~~~~~~~~~~~~~l~~~~~~~~~~ 25 (586)
|||+ +++++++.+|+|+||+....
T Consensus 1 Mkk~-~l~~~l~sal~L~GCg~~s~ 24 (268)
T PF12262_consen 1 MKKL-LLSSALASALGLAGCGGDSE 24 (268)
T ss_pred CchH-HHHHHHHHHHHeeecCCCcc
Confidence 5544 55566666788999976543
No 500
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=46.88 E-value=2e+02 Score=25.19 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=74.5
Q ss_pred EEeChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCceEEEEEeCCC--------cH----HHHHHc
Q 007882 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--------EN----ELAHEY 163 (586)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--------~~----~l~~~~ 163 (586)
..++++.+.----+|+++||.=-|+.|+.-..--..|..+.++|++. .+.++..-|.. +. .++.+|
T Consensus 20 ~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~ 97 (171)
T KOG1651|consen 20 KDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNFVKVRY 97 (171)
T ss_pred ecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHHHHhcc
Confidence 33444444433347888888888999999887778999999999884 48888887753 22 234555
Q ss_pred CCCCCcEEEEEe-CCeeeeecCCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecC
Q 007882 164 DVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNS 229 (586)
Q Consensus 164 ~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~i~~~~~ 229 (586)
+.. +|-+-=++ +|. ..+-+.+|++...+..+-. .-.-.+.+|+-..+..++.-|..
T Consensus 98 ~~~-f~if~KidVNG~--------~~~PlykfLK~~~~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 98 GAE-FPIFQKIDVNGD--------NADPLYKFLKKVKGGPLGD-DIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred CCC-CccEeEEecCCC--------CCchHHHHHhhcCCCcccc-cceeeeEEEeECCCCcEEEeeCC
Confidence 543 33322222 332 5567888888776553322 12245667775555555554443
Done!