BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007883
         (586 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 62/75 (82%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
           +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQEFDE KR
Sbjct: 10  LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 69

Query: 209 SCRRRLAGHNKRRRK 223
           SCRRRLAGHN+RRRK
Sbjct: 70  SCRRRLAGHNERRRK 84


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score =  111 bits (277), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/55 (81%), Positives = 51/55 (92%)

Query: 150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204
           CQV++CGADLS  KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 56/80 (70%)

Query: 148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGK 207
           A CQV DC AD+S  K YH+RH+VC   + AS  ++    +R+CQQC +FH+L +FDEGK
Sbjct: 4   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 63

Query: 208 RSCRRRLAGHNKRRRKTNPD 227
           RSCRR+L  HN RR++   D
Sbjct: 64  RSCRRKLERHNNRRKRKPVD 83


>pdb|1CP9|B Chain B, Crystal Structure Of Penicillin G Acylase From The Bro1
           Mutant Strain Of Providencia Rettgeri
          Length = 553

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 447 NDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQ 485
           N   LV   Q  D ++   SD + YI PG  IL I+L++
Sbjct: 315 NSVKLVSMLQQWDGINQLSSDGKHYIHPGSAILDIWLKE 353


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,594,287
Number of Sequences: 62578
Number of extensions: 569283
Number of successful extensions: 1136
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 4
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)