Query 007883
Match_columns 586
No_of_seqs 166 out of 314
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 16:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 2E-37 4.2E-42 262.6 -1.2 78 149-226 1-78 (79)
2 PF01833 TIG: IPT/TIG domain; 76.0 5.5 0.00012 32.1 4.7 36 548-583 1-36 (85)
3 cd01180 IPT_plexin_repeat1 Fir 75.3 4.8 0.0001 35.0 4.5 30 548-577 1-30 (94)
4 PF09099 Qn_am_d_aIII: Quinohe 73.1 4.5 9.8E-05 35.4 3.7 26 548-573 2-27 (81)
5 PF10866 DUF2704: Protein of u 70.8 2.6 5.7E-05 41.3 1.9 31 451-481 122-159 (168)
6 cd01179 IPT_plexin_repeat2 Sec 67.5 9.3 0.0002 32.4 4.4 35 548-583 1-35 (85)
7 smart00429 IPT ig-like, plexin 66.6 9.8 0.00021 31.7 4.3 33 548-581 2-34 (90)
8 cd00603 IPT_PCSR IPT domain of 64.7 12 0.00026 31.3 4.5 35 548-582 1-35 (90)
9 cd00102 IPT Immunoglobulin-lik 60.0 17 0.00036 29.8 4.5 29 548-576 1-29 (89)
10 PF14901 Jiv90: Cleavage induc 39.3 14 0.00029 33.6 0.8 18 187-204 26-43 (94)
11 cd01181 IPT_plexin_repeat3 Thi 38.6 53 0.0011 29.2 4.4 30 548-577 1-30 (99)
12 cd02969 PRX_like1 Peroxiredoxi 36.9 64 0.0014 30.0 4.9 48 431-478 116-169 (171)
13 PRK00241 nudC NADH pyrophospha 30.8 16 0.00034 37.7 -0.1 37 162-199 92-128 (256)
14 PF12362 DUF3646: DNA polymera 24.6 67 0.0014 29.9 2.8 28 433-460 35-62 (117)
15 PF10083 DUF2321: Uncharacteri 24.2 28 0.00062 34.2 0.3 33 164-196 2-36 (158)
16 PF14332 DUF4388: Domain of un 20.4 2.8E+02 0.0061 23.6 5.6 27 514-540 21-49 (103)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=2e-37 Score=262.62 Aligned_cols=78 Identities=65% Similarity=1.133 Sum_probs=63.2
Q ss_pred ceeeCCCcccccccchhhhccchhhhhcccceeeeCCchhhhhhhhccCccCccccCccchHHHHHhhHhhhhccCCC
Q 007883 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 (586)
Q Consensus 149 ~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~~~ 226 (586)
+||||||++||+.+|.||+||||||.|+||++|+++|..+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999865
No 2
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=76.01 E-value=5.5 Score=32.07 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.5
Q ss_pred ceeEEeeeeeeecCCceEEEEEeeccCCCCceeeEE
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRSPLF 583 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~tril~~ 583 (586)
|.|.+|.|-.-.......+.|+|.||......+.|.
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~ 36 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVK 36 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEE
Confidence 689999998888888999999999995555555554
No 3
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=75.34 E-value=4.8 Score=34.98 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=28.2
Q ss_pred ceeEEeeeeeeecCCceEEEEEeeccCCCC
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINLGRSA 577 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~ 577 (586)
|+|.+|+|..-+..-.|.+.++|.||....
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~ 30 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRK 30 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCc
Confidence 689999999999999999999999999874
No 4
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=73.06 E-value=4.5 Score=35.43 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=24.5
Q ss_pred ceeEEeeeeeeecCCceEEEEEeecc
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINL 573 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL 573 (586)
|+|..|+|-++.+|+++++.+-|.||
T Consensus 2 p~i~aV~P~~lkaG~~t~vti~Gt~L 27 (81)
T PF09099_consen 2 PTILAVSPAGLKAGEETTVTIVGTGL 27 (81)
T ss_dssp SEEEEEESSEEETTCEEEEEEEEES-
T ss_pred CeEEEECchhccCCCeEEEEEEecCc
Confidence 79999999999999999999999999
No 5
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=70.77 E-value=2.6 Score=41.27 Aligned_cols=31 Identities=29% Similarity=0.654 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHccCCC-------CCcccccCCchhhhh
Q 007883 451 LVLRAQILDWLSHSPS-------DMESYIRPGCVILTI 481 (586)
Q Consensus 451 ~~LR~QIl~WLs~~Pt-------dmEsYIRPGCvILTI 481 (586)
.++..+|+|-|.+.=+ .--+||.|.|||||.
T Consensus 122 ~T~kn~vLnVlnn~L~d~~~~~d~~~~yikpnciv~tf 159 (168)
T PF10866_consen 122 NTFKNAVLNVLNNELSDEANEYDTSAGYIKPNCIVLTF 159 (168)
T ss_pred hHHHHHHHHHHhhhccccccccccccCccCCCeEEEee
Confidence 3688999999988766 246999999999995
No 6
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=67.50 E-value=9.3 Score=32.40 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=29.6
Q ss_pred ceeEEeeeeeeecCCceEEEEEeeccCCCCceeeEE
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRSPLF 583 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~tril~~ 583 (586)
|.|.+|.|..-+....+.+.++|.||... .++.|+
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~-~~~~V~ 35 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAG-SSVRVT 35 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCC-CeEEEE
Confidence 68999999999999999999999999764 345553
No 7
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=66.64 E-value=9.8 Score=31.74 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=27.9
Q ss_pred ceeEEeeeeeeecCCceEEEEEeeccCCCCceee
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRSP 581 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~tril 581 (586)
|+|..+.|........+.+.|+|.||.. .+.+.
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-~~~~~ 34 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDS-ISVVF 34 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCc-ceEEE
Confidence 7999999999998888899999999987 44443
No 8
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=64.70 E-value=12 Score=31.30 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=29.9
Q ss_pred ceeEEeeeeeeecCCceEEEEEeeccCCCCceeeE
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRSPL 582 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~tril~ 582 (586)
|+|..++|.--.....+.+.++|.||.....++.|
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V 35 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRV 35 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEE
Confidence 68999999999999999999999999988533333
No 9
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=60.00 E-value=17 Score=29.79 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=26.5
Q ss_pred ceeEEeeeeeeecCCceEEEEEeeccCCC
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINLGRS 576 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL~~p 576 (586)
|+|..|+|..-...-.+.+.|+|.||...
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~ 29 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSG 29 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCC
Confidence 68999999999998899999999999776
No 10
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=39.26 E-value=14 Score=33.60 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=14.7
Q ss_pred hhhhhhhhccCccCcccc
Q 007883 187 MQRFCQQCSRFHVLQEFD 204 (586)
Q Consensus 187 ~qRFCQQC~rFH~L~eFD 204 (586)
..|+||+|..+|+..+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999876544
No 11
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=38.65 E-value=53 Score=29.17 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=26.9
Q ss_pred ceeEEeeeeeeecCCceEEEEEeeccCCCC
Q 007883 548 SKILSVKPIAVPASERAQFFVKGINLGRSA 577 (586)
Q Consensus 548 p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~ 577 (586)
|.|..|+|..=..+-.+.+.|.|.||..=.
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q 30 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQ 30 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCccc
Confidence 689999999988899999999999998654
No 12
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=36.88 E-value=64 Score=30.05 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=35.2
Q ss_pred ccccceEEEEe-cCCCCC-----CchHHHHHHHHHHHccCCCCCcccccCCchh
Q 007883 431 QSRTDRIVFKL-FGKEPN-----DFPLVLRAQILDWLSHSPSDMESYIRPGCVI 478 (586)
Q Consensus 431 q~rTgRIsFKL-Fdk~P~-----dfP~~LR~QIl~WLs~~PtdmEsYIRPGCvI 478 (586)
-++.|||++.= ++-... -=...|++.|-.||+..+.+.|--+=+||.+
T Consensus 116 id~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 169 (171)
T cd02969 116 FDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSI 169 (171)
T ss_pred ECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCccc
Confidence 36778998751 111111 1136699999999999999999999999975
No 13
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=30.78 E-value=16 Score=37.65 Aligned_cols=37 Identities=14% Similarity=0.352 Sum_probs=28.6
Q ss_pred cchhhhccchhhhhcccceeeeCCchhhhhhhhccCcc
Q 007883 162 AKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHV 199 (586)
Q Consensus 162 ~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~ 199 (586)
+-.+|++||-|..+-....+.. +...|.|..|+..|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~~-~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPSK-TEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCeecC-CceeEECCCCCCEEC
Confidence 4588999999999888766554 456688999997653
No 14
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=24.58 E-value=67 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=26.4
Q ss_pred ccceEEEEecCCCCCCchHHHHHHHHHH
Q 007883 433 RTDRIVFKLFGKEPNDFPLVLRAQILDW 460 (586)
Q Consensus 433 rTgRIsFKLFdk~P~dfP~~LR~QIl~W 460 (586)
.-|||.|.+=..-|.||.++|..-+.+|
T Consensus 35 ~pGrie~~~~~~ap~dl~~~L~~~L~~w 62 (117)
T PF12362_consen 35 EPGRIEFRPTPGAPKDLAQRLSRKLQEW 62 (117)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3599999999999999999999999999
No 15
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.19 E-value=28 Score=34.22 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=26.4
Q ss_pred hhhhccchhhh-hcccceeeeC-Cchhhhhhhhcc
Q 007883 164 DYHRRHKVCEM-HSKASRALVG-NVMQRFCQQCSR 196 (586)
Q Consensus 164 ~Y~rR~rVCe~-H~kA~~v~v~-G~~qRFCQQC~r 196 (586)
.||+-..||.- |.-...+.-+ -..+-||.|||.
T Consensus 2 g~y~~aqiC~NGH~~t~~~~~~p~~~~~fC~kCG~ 36 (158)
T PF10083_consen 2 GTYRIAQICLNGHVITDSYDKNPELREKFCSKCGA 36 (158)
T ss_pred cchhHHHHccCccccccccccCchHHHHHHHHhhH
Confidence 47788889976 8777777766 668899999995
No 16
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=20.41 E-value=2.8e+02 Score=23.60 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.7
Q ss_pred ccceEEEEEccEEE--EEECCeEEEeecC
Q 007883 514 TSGWVYARVQHQIA--FIYNGQVVLDTSL 540 (586)
Q Consensus 514 r~G~~lv~v~~qla--~~~dG~v~l~~~~ 540 (586)
++|.+.|..+...+ +++||+++....-
T Consensus 21 ktG~L~v~~~~~~~~i~f~~G~iv~A~~~ 49 (103)
T PF14332_consen 21 KTGVLEVQSGGGEGRIYFRDGRIVHASSG 49 (103)
T ss_pred CeEEEEEEeCCcEEEEEEECCEEEEEEeC
Confidence 89999997777754 8999999976543
Done!