Query 007883
Match_columns 586
No_of_seqs 166 out of 314
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 6.6E-41 2.3E-45 290.2 -0.3 89 142-230 3-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 1.1E-39 3.7E-44 279.8 -0.6 83 146-228 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 2E-30 6.7E-35 208.8 1.5 59 146-204 2-60 (60)
4 1uad_C RSEC5, exocyst complex 49.8 17 0.0006 30.9 4.4 32 547-580 7-38 (99)
5 2cxk_A Camta1, calmodulin bind 37.6 27 0.00094 29.7 3.7 37 547-584 6-42 (95)
6 1pby_A Quinohemoprotein amine 23.7 58 0.002 35.6 4.1 31 545-575 273-303 (489)
7 1jmx_A Amine dehydrogenase; ox 22.9 57 0.002 35.7 3.9 29 547-575 283-311 (494)
8 3fau_A NEDD4-binding protein 2 19.7 25 0.00086 28.5 0.3 30 450-480 51-80 (82)
9 2lau_A THAP domain-containing 18.6 45 0.0015 26.8 1.6 12 146-157 3-14 (81)
10 4a6q_A Histone deacetylase com 17.0 26 0.0009 32.6 -0.2 28 166-204 20-47 (143)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=6.6e-41 Score=290.17 Aligned_cols=89 Identities=64% Similarity=1.084 Sum_probs=80.4
Q ss_pred CCCCCCCceeeCCCcccccccchhhhccchhhhhcccceeeeCCchhhhhhhhccCccCccccCccchHHHHHhhHhhhh
Q 007883 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR 221 (586)
Q Consensus 142 ~~~~~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RR 221 (586)
+++++.++||||||++||+.+|.||+||||||+|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcC
Q 007883 222 RKTNPDAVA 230 (586)
Q Consensus 222 Rk~~~~~~~ 230 (586)
||+++++..
T Consensus 83 Rk~~~~~~~ 91 (94)
T 1ul4_A 83 RKSSGESGP 91 (94)
T ss_dssp CSCCCC---
T ss_pred ccCCCCcCC
Confidence 999998764
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.1e-39 Score=279.81 Aligned_cols=83 Identities=52% Similarity=0.962 Sum_probs=79.5
Q ss_pred CCCceeeCCCcccccccchhhhccchhhhhcccceeeeCCchhhhhhhhccCccCccccCccchHHHHHhhHhhhhccCC
Q 007883 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN 225 (586)
Q Consensus 146 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~~ 225 (586)
+.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 007883 226 PDA 228 (586)
Q Consensus 226 ~~~ 228 (586)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=2e-30 Score=208.85 Aligned_cols=59 Identities=78% Similarity=1.372 Sum_probs=57.1
Q ss_pred CCCceeeCCCcccccccchhhhccchhhhhcccceeeeCCchhhhhhhhccCccCcccc
Q 007883 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (586)
Q Consensus 146 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD 204 (586)
+.++|||+||++||+.+|.|||||||||.|+||++|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=49.75 E-value=17 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=27.0
Q ss_pred CceeEEeeeeeeecCCceEEEEEeeccCCCCcee
Q 007883 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRS 580 (586)
Q Consensus 547 ~p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~tri 580 (586)
.|+|..|+|..-+-| |.+.++|.||......|
T Consensus 7 ~P~It~i~P~~Gp~G--T~vTI~G~nlg~~~sdv 38 (99)
T 1uad_C 7 PPLVTGISPNEGIPW--TKVTIRGENLGTGPTDL 38 (99)
T ss_dssp CCEEEEEESSEESTT--CEEEEEEECSCSSGGGE
T ss_pred CCEEEEEECCCcCCC--CEEEEEEEeCCCCcccc
Confidence 579999999998664 99999999998776544
No 5
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=37.56 E-value=27 Score=29.75 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=30.8
Q ss_pred CceeEEeeeeeeecCCceEEEEEeeccCCCCceeeEEE
Q 007883 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRSPLFI 584 (586)
Q Consensus 547 ~p~I~~V~PiAv~ag~~~~f~vkG~NL~~p~tril~~~ 584 (586)
.=+|..++|-.-..+..|.+.|.|.+|... .++.|++
T Consensus 6 ~~~Itd~sP~~gp~sGGTkv~I~G~~L~~g-s~~~~~f 42 (95)
T 2cxk_A 6 SGMVTDYSPEWSYPEGGVKVLITGPWQEAS-NNYSCLF 42 (95)
T ss_dssp CSCCCEEECSEECTTCCCEEEEESSCCCCS-SCEEEEE
T ss_pred cEEEEEECCCcccCCCCEEEEEEeECCCCC-ccEEEEE
Confidence 347999999999999999999999999654 4666643
No 6
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=23.67 E-value=58 Score=35.65 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=28.5
Q ss_pred CCCceeEEeeeeeeecCCceEEEEEeeccCC
Q 007883 545 NNYSKILSVKPIAVPASERAQFFVKGINLGR 575 (586)
Q Consensus 545 ~~~p~I~~V~PiAv~ag~~~~f~vkG~NL~~ 575 (586)
.-.|+|+.|.|-++.+|++++++|-|.+|..
T Consensus 273 ~~~~~~~av~P~~l~aG~~~~~~i~G~gL~g 303 (489)
T 1pby_A 273 DAAPQVLAVAPARLKIGEETQLRVAGTGLGS 303 (489)
T ss_dssp TCSSEEEEEESCEEETTCCEEEEEEEESCCS
T ss_pred CCCceEEEeChhhhcCCCceEEEEEeccccc
Confidence 4467999999999999999999999999985
No 7
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=22.90 E-value=57 Score=35.70 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=27.8
Q ss_pred CceeEEeeeeeeecCCceEEEEEeeccCC
Q 007883 547 YSKILSVKPIAVPASERAQFFVKGINLGR 575 (586)
Q Consensus 547 ~p~I~~V~PiAv~ag~~~~f~vkG~NL~~ 575 (586)
.|+|+.|.|-++.+|++++++|-|.+|..
T Consensus 283 ~~~~~av~p~~~~ag~~~~~~i~G~gl~g 311 (494)
T 1jmx_A 283 KARLLAVQPAFIKAGGESEITLVGSGLAG 311 (494)
T ss_dssp SCEEEEEESSEEETTCEEEEEEEEESCCS
T ss_pred CceEEEEChhhhcCCCceEEEEEeccccc
Confidence 78999999999999999999999999985
No 8
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=19.70 E-value=25 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.506 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHccCCCCCcccccCCchhhh
Q 007883 450 PLVLRAQILDWLSHSPSDMESYIRPGCVILT 480 (586)
Q Consensus 450 P~~LR~QIl~WLs~~PtdmEsYIRPGCvILT 480 (586)
+..||..|.+||...|-..+. .-|||+++.
T Consensus 51 ~~~Lk~~V~~~L~~~~~~~~e-~n~G~l~V~ 80 (82)
T 3fau_A 51 VARIKPAVIKYLISHSFRFSE-IKPGCLKVM 80 (82)
T ss_dssp --CHHHHHHHHHHHTTCCEEE-EETTEEEEE
T ss_pred cchHHHHHHHHHHhCCCceee-CCCEEEEEE
Confidence 456999999999998866543 589998764
No 9
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=18.59 E-value=45 Score=26.81 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=8.9
Q ss_pred CCCceeeCCCcc
Q 007883 146 SRAVCQVEDCGA 157 (586)
Q Consensus 146 ~~~~CqV~GC~~ 157 (586)
....|-|.||..
T Consensus 3 pG~~C~v~gC~n 14 (81)
T 2lau_A 3 PGFTCCVPGCYN 14 (81)
T ss_dssp SCCSCCCSSSSS
T ss_pred CCCEEEeCCCcC
Confidence 345799999974
No 10
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=17.03 E-value=26 Score=32.59 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=22.5
Q ss_pred hhccchhhhhcccceeeeCCchhhhhhhhccCccCcccc
Q 007883 166 HRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (586)
Q Consensus 166 ~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD 204 (586)
--|.++|+++.+ -||++=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 458899999875 3776657999999996
Done!