BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007884
         (586 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JMM|A Chain A, Crystal Structure Of The V-Region Of Streptococcus Mutans
           Antigen III
          Length = 377

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 268 LDEFDLTELEQFHDVIVASAIFGNY 292
           LD+ D+T LEQ +DV  +  ++GN+
Sbjct: 90  LDDLDITNLEQSNDVASSXELYGNF 114


>pdb|3IPK|A Chain A, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
           MUTANS
 pdb|3IPK|B Chain B, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
           MUTANS
 pdb|3IOX|A Chain A, Crystal Structure Of A3vp1 Of AgiII OF STREPTOCOCCUS
           MUTANS
          Length = 497

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 250 VHCGFVKGSRPGR--QSGFDLDEFDLTELEQFHDVIVASAIFGNY 292
           V   F K +   +  Q    LD+ D+T LEQ +DV  +  ++GN+
Sbjct: 148 VDDAFSKSTSKAKYDQKILQLDDLDITNLEQSNDVASSMELYGNF 192


>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
          Length = 674

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 361 LLHRIFPNVRYSIWIDGKLQ--LVVDPYQILERFLWRENATFAISRHYR 407
           ++H++     ++++    ++   V  P Q+LE ++W +     +SRHYR
Sbjct: 463 VMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYR 511


>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
           Neurolysin Specificity In Neurotensin Cleavage Site
          Length = 674

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 361 LLHRIFPNVRYSIWIDGKLQ--LVVDPYQILERFLWRENATFAISRHYR 407
           ++H++     ++++    ++   V  P Q+LE ++W +     +SRHYR
Sbjct: 463 VMHQLCSQAEFAMFSGTHVETDFVEAPSQMLENWVWEQEPLLRMSRHYR 511


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,621,948
Number of Sequences: 62578
Number of extensions: 602169
Number of successful extensions: 1095
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 4
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)