Query 007884
Match_columns 586
No_of_seqs 124 out of 140
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 16:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 6E-113 1E-117 867.9 27.8 304 209-523 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 93.6 0.096 2.1E-06 51.3 4.8 159 307-498 29-199 (248)
3 PF01501 Glyco_transf_8: Glyco 88.5 0.73 1.6E-05 43.6 4.9 115 354-497 84-204 (250)
4 cd00505 Glyco_transf_8 Members 87.6 3.7 8E-05 40.7 9.3 160 307-498 29-200 (246)
5 PF03407 Nucleotid_trans: Nucl 68.6 12 0.00026 35.9 6.0 90 368-499 66-156 (212)
6 cd06429 GT8_like_1 GT8_like_1 59.0 13 0.00029 38.1 4.5 96 307-405 28-148 (257)
7 cd02537 GT8_Glycogenin Glycoge 48.2 82 0.0018 31.5 8.0 53 338-391 53-112 (240)
8 cd06432 GT8_HUGT1_C_like The C 46.4 19 0.00041 36.6 3.2 96 307-405 29-130 (248)
9 PF03452 Anp1: Anp1; InterPro 46.2 20 0.00043 37.7 3.4 46 360-408 134-179 (269)
10 cd06430 GT8_like_2 GT8_like_2 42.7 48 0.001 35.5 5.6 34 359-392 87-120 (304)
11 PLN02742 Probable galacturonos 38.3 49 0.0011 38.0 5.2 95 307-404 255-386 (534)
12 PF03314 DUF273: Protein of un 38.2 25 0.00055 36.2 2.7 41 362-404 35-75 (222)
13 PF05637 Glyco_transf_34: gala 36.3 25 0.00055 35.6 2.3 52 338-390 42-97 (239)
14 cd06431 GT8_LARGE_C LARGE cata 34.8 41 0.00089 35.0 3.6 98 306-405 28-135 (280)
15 PLN02523 galacturonosyltransfe 31.8 33 0.00071 39.6 2.5 44 360-405 368-411 (559)
16 PLN02718 Probable galacturonos 31.5 96 0.0021 36.3 6.1 96 307-405 341-452 (603)
17 PRK15171 lipopolysaccharide 1, 30.2 59 0.0013 34.6 4.0 45 357-403 108-153 (334)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=6e-113 Score=867.94 Aligned_cols=304 Identities=58% Similarity=1.019 Sum_probs=296.7
Q ss_pred ccceeecCCCCCcCCCCCCCCCCCCChhhhcccccccCceeeeceeecCCCCCCCCCCcCChhcHHHHhcCCcEEEEEEe
Q 007884 209 NLTYIHDENPVKTETHGGSDFGGYPSLKQRNGSYEIKESMTVHCGFVKGSRPGRQSGFDLDEFDLTELEQFHDVIVASAI 288 (586)
Q Consensus 209 ~l~Yi~~~~~~~~~~~~~~~FgG~~sl~~R~~sF~~~~~~~vhCGF~~g~~p~~~tGfdi~~~D~~~m~~C~kVVVYTAI 288 (586)
||+||.+|+.+. +.++++|||||||+||++||+++++|+|||||++ ||||||+|.|+.+|++|+ |||||||
T Consensus 1 nl~y~~~~~~~~--~~~~~~f~g~~s~~~R~~sf~~~~~~~v~Cgf~~------~~gf~i~~~d~~~m~~c~-vvV~saI 71 (305)
T PF04765_consen 1 NLTYIEEENKPE--SGRGPSFGGNQSLEERESSFDIQEDMTVHCGFVK------NTGFDISESDRRYMEKCR-VVVYSAI 71 (305)
T ss_pred CCcccccccccc--cCCCCCcCCcCCHHHHHHhcCCCCCceecccccc------CCCCCCCHHHHHHHhcCC-EEEEEEe
Confidence 799999998666 7889999999999999999999999999999999 799999999999999999 9999999
Q ss_pred eCCCcccCCCcccCccccCCccEEEEechhhHHhhhccccc-CCCccccceEEEEeccCCCCCccccCccccccccccCC
Q 007884 289 FGNYDLIQQPKKISQAARQNVPFYMFVDEETEAYMKNSSIL-DSNKRVGLWRIIVVRNIPYNDSRRNGKVPKLLLHRIFP 367 (586)
Q Consensus 289 FGnYD~L~qP~~Is~~s~d~VCFimFTDe~tl~~l~~~~~~-d~~~kvG~WrIV~V~nlpy~D~rRngKipKiLpHrLFP 367 (586)
||+||+|+||++|+++++++|||+||||+.|+++|++++.+ +++.++|+||||+|+++||+|+|||||+||||||+|||
T Consensus 72 FG~yD~l~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~d~rr~~r~~K~lpHrlfp 151 (305)
T PF04765_consen 72 FGNYDKLRQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYDDPRRNGRIPKLLPHRLFP 151 (305)
T ss_pred cCCCccccCchhhCHHHhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCcchhhcCcccceeccccCC
Confidence 99999999999999999999999999999999999998655 78899999999999999999999999999999999999
Q ss_pred CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCcccC
Q 007884 368 NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFYKNEGLTPYSEA 447 (586)
Q Consensus 368 nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Yk~eGL~~~s~~ 447 (586)
||+|||||||||+|++||++|||++||+++++|||++||.|+||||||+||++++||+++.|++||++|+++|||+|+.+
T Consensus 152 ~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~~eGlp~~s~~ 231 (305)
T PF04765_consen 152 NYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYKQEGLPPWSPA 231 (305)
T ss_pred CCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeEecccCCchhhhHHHHHHHHhcCCCCCcccHHHHHHHhhccCcceeeccccccchhhhhhccc
Q 007884 448 KLPITSDVPEGCVIIREHIPITNLFSCLWFNEVDRFTARDQLSFSTVRDKIMAKVNWTVNMFLDCERRNFVIQAYH 523 (586)
Q Consensus 448 klP~~sgLpE~~VIIR~Htp~snlFmclWFnEv~rfS~RDQLSF~YVl~Kl~~~v~~~lnMF~dcerr~~v~~~~H 523 (586)
|+|+.+|||||+||||+|++++|+|||+|||||++||+||||||+||+||++. +|++|||+|||||++|++++|
T Consensus 232 k~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~--~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 232 KLPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGP--KFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred ccccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCC--cccchhhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999987 589999999999999999998
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=93.60 E-value=0.096 Score=51.32 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCccEEEEechhhHHhhhcccccCCCccccceEEEEeccCCCCCcc-ccCc-----cccccccccCCCCCEEEEEecceE
Q 007884 307 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYNDSR-RNGK-----VPKLLLHRIFPNVRYSIWIDGKLQ 380 (586)
Q Consensus 307 d~VCFimFTDe~tl~~l~~~~~~d~~~kvG~WrIV~V~nlpy~D~r-RngK-----ipKiLpHrLFPnyrYSIWIDgkIq 380 (586)
..++|++++|+.+....+.=..+.... ...-+++.++...+.+.. ...+ +.|++...+||+|+.-||||+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~l 107 (248)
T cd04194 29 RDYDFYILNDDISEENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADII 107 (248)
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEE
Confidence 478999999875443322211110000 122344444332122111 1222 348899999999999999999999
Q ss_pred EeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCcccCCCCCCCCCCccee
Q 007884 381 LVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFYKNEGLTPYSEAKLPITSDVPEGCV 460 (586)
Q Consensus 381 L~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Yk~eGL~~~s~~klP~~sgLpE~~V 460 (586)
+..|+..|.+.-+ ++..+|+..|..- .+ +... + ...+. +...+.+-++|
T Consensus 108 v~~di~~L~~~~~--~~~~~aa~~d~~~--~~-~~~~-~-----------------~~~~~--------~~~~~yfNsGv 156 (248)
T cd04194 108 VLGDLSELFDIDL--GDNLLAAVRDPFI--EQ-EKKR-K-----------------RRLGG--------YDDGSYFNSGV 156 (248)
T ss_pred ecCCHHHHhcCCc--CCCEEEEEecccH--HH-HHHH-H-----------------hhcCC--------Ccccceeeecc
Confidence 9999999886433 4667888776431 11 1000 0 11122 12344566777
Q ss_pred EecccC-----CchhhhHHHHHHHHh-cCCCCCcccHHHHHHHh
Q 007884 461 IIREHI-----PITNLFSCLWFNEVD-RFTARDQLSFSTVRDKI 498 (586)
Q Consensus 461 IIR~Ht-----p~snlFmclWFnEv~-rfS~RDQLSF~YVl~Kl 498 (586)
++=+-. ...+.++ .|..+.. ++.-.||-.++.+.+..
T Consensus 157 ~l~nl~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~~~~~ 199 (248)
T cd04194 157 LLINLKKWREENITEKLL-ELIKEYGGRLIYPDQDILNAVLKDK 199 (248)
T ss_pred hheeHHHHHHhhhHHHHH-HHHHhCCCceeeCChHHHHHHHhCC
Confidence 763321 1222211 3334332 36679999999999863
No 3
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=88.53 E-value=0.73 Score=43.60 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=65.9
Q ss_pred cCccccccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHH
Q 007884 354 NGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQV 433 (586)
Q Consensus 354 ngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qm 433 (586)
..-+.|++.+.+|++|+--||+|+-+.+..|+..|.+.-+ ++..+|+... ..+
T Consensus 84 ~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~------------------------~~~- 136 (250)
T PF01501_consen 84 PATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED------------------------ESF- 136 (250)
T ss_dssp GGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-----------------------------
T ss_pred HHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc------------------------chh-
Confidence 3344699999999999999999999999999999987554 3556777666 000
Q ss_pred HHHHhCCCCCcccCCCCCCCCCCcceeEecccCC--chhhhHHHHHHHHh----cCCCCCcccHHHHHHH
Q 007884 434 EFYKNEGLTPYSEAKLPITSDVPEGCVIIREHIP--ITNLFSCLWFNEVD----RFTARDQLSFSTVRDK 497 (586)
Q Consensus 434 e~Yk~eGL~~~s~~klP~~sgLpE~~VIIR~Htp--~snlFmclWFnEv~----rfS~RDQLSF~YVl~K 497 (586)
..+ ..+-..+.....+...+.+-++|++=+-.. ..++ ...+.+.++ +..-.||=-|+++...
T Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~ 204 (250)
T PF01501_consen 137 DNF-PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENI-LQKLIEWLEQNGMKLGFPDQDILNIVFYG 204 (250)
T ss_dssp HHH-HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHH-HHHHHHHHHHTTTT-SSCHHHHHHHHHTT
T ss_pred hhh-hhcccchhhcccCcccccccCcEEEEeechhhhhhh-hhhhhhhhhhcccccCcCchHHHhhhccc
Confidence 100 111111222233445677888888744332 2222 222222222 2455899999999873
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=87.59 E-value=3.7 Score=40.66 Aligned_cols=160 Identities=13% Similarity=0.168 Sum_probs=92.9
Q ss_pred CCccEEEEechhhHHhhhcccccCCCccccceEEEEeccCCCC------CccccCccccccccccCCCCCEEEEEecceE
Q 007884 307 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYN------DSRRNGKVPKLLLHRIFPNVRYSIWIDGKLQ 380 (586)
Q Consensus 307 d~VCFimFTDe~tl~~l~~~~~~d~~~kvG~WrIV~V~nlpy~------D~rRngKipKiLpHrLFPnyrYSIWIDgkIq 380 (586)
+.+.|+.++|.......+.-..+-.. .....+++.++...+. ......-+.|++..+|||+++--||+|+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~i 107 (246)
T cd00505 29 KPLRFHVLTNPLSDTFKAALDNLRKL-YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADIL 107 (246)
T ss_pred CCeEEEEEEccccHHHHHHHHHHHhc-cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCee
Confidence 47889999988554322211111000 0123455555322221 2223444679999999999999999999999
Q ss_pred EeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHH-HhCCCCCcccCCCCCCCCCCcce
Q 007884 381 LVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFY-KNEGLTPYSEAKLPITSDVPEGC 459 (586)
Q Consensus 381 L~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Y-k~eGL~~~s~~klP~~sgLpE~~ 459 (586)
+..|+..|.+--+ ++..+|+..-.. .. ... +.| +..|+. .....+-++
T Consensus 108 v~~di~~L~~~~l--~~~~~aav~d~~----~~------~~~-----------~~~~~~~~~~--------~~~~yfNsG 156 (246)
T cd00505 108 VLTDIDELWDTPL--GGQELAAAPDPG----DR------REG-----------KYYRQKRSHL--------AGPDYFNSG 156 (246)
T ss_pred eccCHHHHhhccC--CCCeEEEccCch----hh------hcc-----------chhhcccCCC--------CCCCceeee
Confidence 9999999987655 456788764321 00 000 111 122331 223356678
Q ss_pred eEecccCCc-----hhhhHHHHHHHHhcCCCCCcccHHHHHHHh
Q 007884 460 VIIREHIPI-----TNLFSCLWFNEVDRFTARDQLSFSTVRDKI 498 (586)
Q Consensus 460 VIIR~Htp~-----snlFmclWFnEv~rfS~RDQLSF~YVl~Kl 498 (586)
|++=+-... .....+.|.+...+..--||=.++.++...
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcC
Confidence 887443322 122234455555678889999999998764
No 5
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=68.56 E-value=12 Score=35.86 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=62.7
Q ss_pred CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCcccC
Q 007884 368 NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFYKNEGLTPYSEA 447 (586)
Q Consensus 368 nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Yk~eGL~~~s~~ 447 (586)
+|+ -+++|+-+.+..||..+++ . .+.++.++.-....... +
T Consensus 66 G~~-vl~~D~Dvv~~~dp~~~~~-~---~~~Di~~~~d~~~~~~~-----------------------~----------- 106 (212)
T PF03407_consen 66 GYD-VLFSDADVVWLRDPLPYFE-N---PDADILFSSDGWDGTNS-----------------------D----------- 106 (212)
T ss_pred CCc-eEEecCCEEEecCcHHhhc-c---CCCceEEecCCCcccch-----------------------h-----------
Confidence 444 5689999999999999982 1 45677766522210000 0
Q ss_pred CCCCCCCCCcceeEecccCCchhhhHHHHHHHHhcCCC-CCcccHHHHHHHhh
Q 007884 448 KLPITSDVPEGCVIIREHIPITNLFSCLWFNEVDRFTA-RDQLSFSTVRDKIM 499 (586)
Q Consensus 448 klP~~sgLpE~~VIIR~Htp~snlFmclWFnEv~rfS~-RDQLSF~YVl~Kl~ 499 (586)
.....+-+++++=+.++.+..|+..|-......+. .||-.|+.++....
T Consensus 107 ---~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 107 ---RNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQA 156 (212)
T ss_pred ---hcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcc
Confidence 00112246777766699998899999999999955 79999999999865
No 6
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=59.02 E-value=13 Score=38.14 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=60.6
Q ss_pred CCccEEEEechhhHHhhhcccccCCCccccceEEEEeccCCCCC-----c---------------cccCc-----ccccc
Q 007884 307 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYND-----S---------------RRNGK-----VPKLL 361 (586)
Q Consensus 307 d~VCFimFTDe~tl~~l~~~~~~d~~~kvG~WrIV~V~nlpy~D-----~---------------rRngK-----ipKiL 361 (586)
.+++|..|||..+...++.--... ....-..+++.+++..+.+ + .+... +.+++
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ 106 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDLN-PLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFARFY 106 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHhc-CCCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHHHHHH
Confidence 478999999988766555321111 1112345666664432211 1 11111 34667
Q ss_pred ccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecC
Q 007884 362 LHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRH 405 (586)
Q Consensus 362 pHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskH 405 (586)
.-.+||+++--||+|+-+.+.+|...|.+.=| ++..+|+...
T Consensus 107 ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 107 LPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 77889999999999999999999999887544 3566766655
No 7
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=48.16 E-value=82 Score=31.46 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=38.3
Q ss_pred eEEEEeccCCCC-------CccccCccccccccccCCCCCEEEEEecceEEeeCHHHHHHH
Q 007884 338 WRIIVVRNIPYN-------DSRRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILER 391 (586)
Q Consensus 338 WrIV~V~nlpy~-------D~rRngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~ 391 (586)
++++.|+.+... +.+-.+-+.|+..-.+ .+|+--||+|+-+.+..|+..|.+.
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~l-~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 53 WIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWNL-TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred CEEEecCccCCcchhhhccchHHHHHhHHHHhccc-cccceEEEEeCCeeEccCHHHHhCC
Confidence 677776554322 2233445678887776 5899999999999999998887753
No 8
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=46.36 E-value=19 Score=36.63 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=55.3
Q ss_pred CCccEEEEechhhHHhhhcccccCCCccccceEEEEecc-CCCCCccccC--c--cccccccccCC-CCCEEEEEecceE
Q 007884 307 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRN-IPYNDSRRNG--K--VPKLLLHRIFP-NVRYSIWIDGKLQ 380 (586)
Q Consensus 307 d~VCFimFTDe~tl~~l~~~~~~d~~~kvG~WrIV~V~n-lpy~D~rRng--K--ipKiLpHrLFP-nyrYSIWIDgkIq 380 (586)
..+.|++++|..+.+..+.-..+.+.. ...=.++.|+. ..+....... . +..+++..+|| +++--||+|+-+-
T Consensus 29 ~~~~fyil~~~is~e~~~~l~~~~~~~-~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~vdkvLYLD~Dil 107 (248)
T cd06432 29 SPVKFWFIKNFLSPQFKEFLPEMAKEY-GFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQI 107 (248)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHh-CCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhccCEEEEEcCCce
Confidence 368999999977644333211110000 01113344431 1111111111 1 22366777899 6999999999999
Q ss_pred EeeCHHHHHHHHhhccCCeEEEecC
Q 007884 381 LVVDPYQILERFLWRENATFAISRH 405 (586)
Q Consensus 381 L~~DP~~LLe~~Lwr~n~~fAIskH 405 (586)
.++|...|.+-=+ ++.-+|+..|
T Consensus 108 v~~dL~eL~~~dl--~~~~~Aav~d 130 (248)
T cd06432 108 VRTDLKELMDMDL--KGAPYGYTPF 130 (248)
T ss_pred ecccHHHHHhcCc--CCCeEEEeec
Confidence 9999888876544 4667888776
No 9
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=46.16 E-value=20 Score=37.74 Aligned_cols=46 Identities=17% Similarity=0.462 Sum_probs=37.3
Q ss_pred ccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCC
Q 007884 360 LLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRR 408 (586)
Q Consensus 360 iLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R 408 (586)
+|.|-|=|..++.+|+|+-|. ..|-.||+.++. .+.+|-+++=+.+
T Consensus 134 LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli~-~~kdIivPn~~~~ 179 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIV--ETPPTLIQDLIA-HDKDIIVPNCWRR 179 (269)
T ss_pred HHHhhcCCcccEEEEEecCcc--cCChHHHHHHHh-CCCCEEccceeec
Confidence 567777789999999999886 888899999985 5778876654444
No 10
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=42.66 E-value=48 Score=35.45 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=30.7
Q ss_pred cccccccCCCCCEEEEEecceEEeeCHHHHHHHH
Q 007884 359 KLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERF 392 (586)
Q Consensus 359 KiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~ 392 (586)
.++...+||+.+--||+|+-+.+.+|+..|.+-|
T Consensus 87 RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~ 120 (304)
T cd06430 87 RLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFL 120 (304)
T ss_pred HHHHHHHhhhhceEEEeccceeecCCHHHHHHHH
Confidence 3888999999999999999999999999998853
No 11
>PLN02742 Probable galacturonosyltransferase
Probab=38.27 E-value=49 Score=38.03 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCccEEEEechhhHHhhhcccccCCCccccceEEEEeccCCCCCc-------------------------------cccC
Q 007884 307 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYNDS-------------------------------RRNG 355 (586)
Q Consensus 307 d~VCFimFTDe~tl~~l~~~~~~d~~~kvG~WrIV~V~nlpy~D~-------------------------------rRng 355 (586)
.++-|..+||..+...++.== .....+.-.|+|..+++..+... .|+-
T Consensus 255 ~~~VFHiVTD~~n~~aM~~WF-~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p 333 (534)
T PLN02742 255 DQLVFHLVTDEVNYGAMQAWF-AMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNP 333 (534)
T ss_pred CcEEEEEeechhhHHHHHHHH-hhCCCCccEEEEEEeccccccccccchHHHHhhhhhhhhhhcccccccccccccccCc
Confidence 458899999999887666410 01223345677777765322110 0111
Q ss_pred ccc------cccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEec
Q 007884 356 KVP------KLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISR 404 (586)
Q Consensus 356 Kip------KiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIsk 404 (586)
++. +++.-++||+.+--||+|+-+.+.+|+..|.+-=| ++.-+|+..
T Consensus 334 ~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL--~~~viaAVe 386 (534)
T PLN02742 334 KYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDL--HGNVNGAVE 386 (534)
T ss_pred ccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCC--CCCEEEEeC
Confidence 111 22333689999999999999999999888876433 355666653
No 12
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=38.18 E-value=25 Score=36.19 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=34.3
Q ss_pred ccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEec
Q 007884 362 LHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISR 404 (586)
Q Consensus 362 pHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIsk 404 (586)
.+.++|++++-++|||-| .+++|...||+|+. .+.++-.+.
T Consensus 35 va~~L~~~~~vlflDaDi-gVvNp~~~iEefid-~~~Di~fyd 75 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADI-GVVNPNRRIEEFID-EGYDIIFYD 75 (222)
T ss_pred HHHHhccCCEEEEEcCCc-eeecCcccHHHhcC-CCCcEEEEe
Confidence 457789999999999999 55899999999995 577777664
No 13
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=36.26 E-value=25 Score=35.62 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=22.2
Q ss_pred eEEEEeccCCCCCccccCccccc--ccccc--CCCCCEEEEEecceEEeeCHHHHHH
Q 007884 338 WRIIVVRNIPYNDSRRNGKVPKL--LLHRI--FPNVRYSIWIDGKLQLVVDPYQILE 390 (586)
Q Consensus 338 WrIV~V~nlpy~D~rRngKipKi--LpHrL--FPnyrYSIWIDgkIqL~~DP~~LLe 390 (586)
..++.+....+.+.-+.+-+-|+ +-|.+ ||++++-+|+|+..-| .||..=|+
T Consensus 42 Y~~~~~~~~~~~~~~~~~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali-~n~~~~L~ 97 (239)
T PF05637_consen 42 YDLYYRNIQEYDDPERPGSWAKIPALRAAMKKYPEAEWVWWLDSDALI-MNPDFSLE 97 (239)
T ss_dssp -EEEEE-S--S--SHHHHHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE---------
T ss_pred CEEEEEChHHcCCCCCChhhHHHHHHHHHHHhCCCCCEEEEEcCCeEE-Eecccccc
Confidence 34444434445544444556665 33333 6999999999999855 45544443
No 14
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=34.81 E-value=41 Score=34.99 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=59.9
Q ss_pred cCCccEEEEechhhHHhhhccc-ccCCCccccceEEEEeccC--CC---CCccccCcc--ccccccccCC-CCCEEEEEe
Q 007884 306 RQNVPFYMFVDEETEAYMKNSS-ILDSNKRVGLWRIIVVRNI--PY---NDSRRNGKV--PKLLLHRIFP-NVRYSIWID 376 (586)
Q Consensus 306 ~d~VCFimFTDe~tl~~l~~~~-~~d~~~kvG~WrIV~V~nl--py---~D~rRngKi--pKiLpHrLFP-nyrYSIWID 376 (586)
...++|+.|+|+...+.++.-. ... ...-.+.++.+++. .+ ......+.+ .+++.+.+|| +++--||+|
T Consensus 28 ~~~~~fhii~d~~s~~~~~~l~~~~~--~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD 105 (280)
T cd06431 28 RNPLHFHLITDEIARRILATLFQTWM--VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLD 105 (280)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHhcc--ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEEEc
Confidence 3568999999977655433211 111 11223555555321 11 111222322 4888999999 799999999
Q ss_pred cceEEeeCHHHHHHHHh-hccCCeEEEecC
Q 007884 377 GKLQLVVDPYQILERFL-WRENATFAISRH 405 (586)
Q Consensus 377 gkIqL~~DP~~LLe~~L-wr~n~~fAIskH 405 (586)
+-+.+.+|+..|.+-+. ...+.-+|+..+
T Consensus 106 ~Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 106 TDITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred CCEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 99999999999998741 123445666654
No 15
>PLN02523 galacturonosyltransferase
Probab=31.76 E-value=33 Score=39.57 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=33.6
Q ss_pred ccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecC
Q 007884 360 LLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRH 405 (586)
Q Consensus 360 iLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskH 405 (586)
++.-++||+++--||+|.-+.+.+|...|.+-=| ++.-+|+...
T Consensus 368 f~IPeLLP~ldKVLYLD~DVVVq~DLseLw~iDL--~gkv~aAVeD 411 (559)
T PLN02523 368 FYLPEMYPKLHRILFLDDDVVVQKDLTGLWKIDM--DGKVNGAVET 411 (559)
T ss_pred HHHHHHhcccCeEEEEeCCEEecCCHHHHHhCcC--CCceEEEehh
Confidence 3455789999999999999999999888876333 3555666544
No 16
>PLN02718 Probable galacturonosyltransferase
Probab=31.48 E-value=96 Score=36.30 Aligned_cols=96 Identities=13% Similarity=0.222 Sum_probs=60.1
Q ss_pred CCccEEEEechhhHHhhhcccccCCCccccceEEEEeccCC-----CCC-----ccccCc------cccccccccCCCCC
Q 007884 307 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIP-----YND-----SRRNGK------VPKLLLHRIFPNVR 370 (586)
Q Consensus 307 d~VCFimFTDe~tl~~l~~~~~~d~~~kvG~WrIV~V~nlp-----y~D-----~rRngK------ipKiLpHrLFPnyr 370 (586)
.++.|..|||..+...++.--.+. ......+.|+.+++.. |.+ +..+.+ +.+++.-.+||+++
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~-~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~ 419 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLN-PPGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPGLN 419 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhC-CCCCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHhcccC
Confidence 368999999998876665311111 1113456676665321 111 001111 23556667899999
Q ss_pred EEEEEecceEEeeCHHHHHHHHhhccCCeEEEecC
Q 007884 371 YSIWIDGKLQLVVDPYQILERFLWRENATFAISRH 405 (586)
Q Consensus 371 YSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskH 405 (586)
--||+|+-+.+.+|+..|.+-=| ++..+|+...
T Consensus 420 KvLYLD~DvVV~~DL~eL~~iDl--~~~v~aaVed 452 (603)
T PLN02718 420 KIVLFDHDVVVQRDLSRLWSLDM--KGKVVGAVET 452 (603)
T ss_pred EEEEEECCEEecCCHHHHhcCCC--CCcEEEEecc
Confidence 99999999999999888876433 3556666643
No 17
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=30.19 E-value=59 Score=34.57 Aligned_cols=45 Identities=7% Similarity=0.151 Sum_probs=34.4
Q ss_pred cccccccccCC-CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEe
Q 007884 357 VPKLLLHRIFP-NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAIS 403 (586)
Q Consensus 357 ipKiLpHrLFP-nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIs 403 (586)
+.+++.-.+|| +++--||+|+-+.+.+|...|.+-=| ++..+|+.
T Consensus 108 Y~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl--~~~~~aav 153 (334)
T PRK15171 108 YFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDF--AENEIAAV 153 (334)
T ss_pred HHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccC--CCCeEEEE
Confidence 44667778898 69999999999999999998886544 22445554
Done!