Query 007884
Match_columns 586
No_of_seqs 124 out of 140
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g9r_A Glycosyl transferase; a 75.7 2.2 7.5E-05 42.3 4.3 108 357-496 84-197 (311)
2 3tzt_A Glycosyl transferase fa 75.1 1.4 4.9E-05 43.2 2.8 49 357-407 88-137 (276)
3 3u2u_A Glycogenin-1, GN-1, GN1 28.4 43 0.0015 33.0 3.9 51 338-389 57-116 (263)
4 2bn5_B U1 small nuclear ribonu 26.9 49 0.0017 22.5 2.7 17 157-175 4-20 (26)
5 1ll2_A Glycogenin-1; protein-s 19.8 84 0.0029 31.7 4.2 52 338-390 56-116 (333)
6 2jwa_A Receptor tyrosine-prote 18.2 40 0.0014 25.7 1.1 17 67-83 19-35 (44)
7 4gqb_C Histone H4 peptide; TIM 12.9 70 0.0024 21.7 1.0 14 565-578 11-24 (26)
8 2ki9_A Cannabinoid receptor 2; 12.1 66 0.0023 21.7 0.8 22 65-86 2-23 (33)
9 3j1r_A Archaeal adhesion filam 11.1 66 0.0023 22.2 0.5 16 68-83 8-23 (26)
10 2dha_A FLJ20171 protein; RRM d 10.0 94 0.0032 27.0 1.2 75 225-320 3-81 (123)
No 1
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=75.72 E-value=2.2 Score=42.26 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=66.4
Q ss_pred cccccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHH
Q 007884 357 VPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFY 436 (586)
Q Consensus 357 ipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Y 436 (586)
+.|++...+||+++-.||||+-+.+..|+..|.+.=+ ++..+|+..+ | +.+ ..+ +..
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~~----------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQE----------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TST----------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hhH----------HHH
Confidence 4577788889999999999999999999998886423 3556777653 2 222 110 112
Q ss_pred HhCCCCCcccCCCCCCCCCCcceeEecccC-----CchhhhHHHHHHHHh-cCCCCCcccHHHHHH
Q 007884 437 KNEGLTPYSEAKLPITSDVPEGCVIIREHI-----PITNLFSCLWFNEVD-RFTARDQLSFSTVRD 496 (586)
Q Consensus 437 k~eGL~~~s~~klP~~sgLpE~~VIIR~Ht-----p~snlFmclWFnEv~-rfS~RDQLSF~YVl~ 496 (586)
...|++. ....+-++|++=+-. ...+. ...|.++.. ++.--||=-++.++.
T Consensus 141 ~~~~~~~--------~~~yfNsGv~linl~~~r~~~~~~~-~~~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 141 QKIGMAD--------GEYYFNAGVLLINLKKWRRHDIFKM-SSEWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp HHTTCCT--------TSCCEEEEEEEECHHHHTTSCHHHH-HHHHHHHHTTTCSSHHHHHHHHHHT
T ss_pred HhcCCCC--------CCceEeeeeeeeeHHHHHhcchHHH-HHHHHHhccCcCccCCcCHHHHHHc
Confidence 3445532 344677888874322 12222 123444432 355579988888865
No 2
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=75.12 E-value=1.4 Score=43.22 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=38.9
Q ss_pred cccccccccCC-CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCC
Q 007884 357 VPKLLLHRIFP-NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYR 407 (586)
Q Consensus 357 ipKiLpHrLFP-nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~ 407 (586)
+.|++...+|| +++--||+|+-+.+..|+..|.+.=+ ++..+|+..+..
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d~~ 137 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASHTG 137 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC--
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEecc
Confidence 46888999999 69999999999999999998886433 356788877643
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=28.39 E-value=43 Score=33.04 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=37.4
Q ss_pred eEEEEeccCCCCC---------ccccCccccccccccCCCCCEEEEEecceEEeeCHHHHH
Q 007884 338 WRIIVVRNIPYND---------SRRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQIL 389 (586)
Q Consensus 338 WrIV~V~nlpy~D---------~rRngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LL 389 (586)
++++.|+.+...+ ++...-+.|++..++. +|+--||+|+-+.+..|+..|.
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf 116 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLF 116 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHh
Confidence 5777776554322 3334457799998876 6999999999999999976654
No 4
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=26.91 E-value=49 Score=22.48 Aligned_cols=17 Identities=53% Similarity=1.081 Sum_probs=11.1
Q ss_pred CCCCCCCCccCCCCCCCCC
Q 007884 157 PLHHPCENFAFPPPPPPGL 175 (586)
Q Consensus 157 ~~~h~c~~f~~~~~p~~~~ 175 (586)
|.|| +-||+||||-..+
T Consensus 4 pahh--nmfsvppppi~gr 20 (26)
T 2bn5_B 4 PAHH--NMFSVPPPPILGR 20 (26)
T ss_dssp CCCC--CCCSCCCCSCCCC
T ss_pred CccC--ceecCCCCCcccC
Confidence 3355 6799988665544
No 5
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=19.81 E-value=84 Score=31.73 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=37.1
Q ss_pred eEEEEeccCCCCCc---------cccCccccccccccCCCCCEEEEEecceEEeeCHHHHHH
Q 007884 338 WRIIVVRNIPYNDS---------RRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILE 390 (586)
Q Consensus 338 WrIV~V~nlpy~D~---------rRngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe 390 (586)
++|+.|+.+...++ ....-+.|++...| ++|+--||||+-+.+..|+..|.+
T Consensus 56 ~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 56 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp SEEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred CEEEEEeecCCcchhhcccccccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 36777765543221 11233568888875 899999999999999999877764
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.18 E-value=40 Score=25.73 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=10.4
Q ss_pred hhHHHHHHhhHhhheee
Q 007884 67 VAMLLLVGLPLLIFTLG 83 (586)
Q Consensus 67 ~~~l~l~~~~~~v~~~~ 83 (586)
|++|+++++++++|+|+
T Consensus 19 VGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 45556666666666653
No 7
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=12.93 E-value=70 Score=21.73 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=10.3
Q ss_pred CCCCCccccccccC
Q 007884 565 EKRSGSKRHRKVAA 578 (586)
Q Consensus 565 ~~~~~~~~~~~~~~ 578 (586)
-.+.|.+||||+..
T Consensus 11 lgkggakrhrkv~~ 24 (26)
T 4gqb_C 11 LGKGGAKRHRKVXX 24 (26)
T ss_pred cCccchhhhccccc
Confidence 34567789999864
No 8
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=12.14 E-value=66 Score=21.65 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=14.9
Q ss_pred chhhHHHHHHhhHhhheeeeee
Q 007884 65 RRVAMLLLVGLPLLIFTLGSYV 86 (586)
Q Consensus 65 ~~~~~l~l~~~~~~v~~~~~~~ 86 (586)
+|+.-.+++++.+.+.||.=|.
T Consensus 2 ~k~~k~l~~vv~~F~icW~P~~ 23 (33)
T 2ki9_A 2 VRLAKTLGLVLAVLLICWFPVL 23 (33)
T ss_dssp CSSSSHHHHHHHHHTTTSSHHH
T ss_pred chhhhhHHHHHHHHHHHHhHHH
Confidence 4555556667778888997653
No 9
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=11.14 E-value=66 Score=22.21 Aligned_cols=16 Identities=13% Similarity=0.384 Sum_probs=9.0
Q ss_pred hHHHHHHhhHhhheee
Q 007884 68 AMLLLVGLPLLIFTLG 83 (586)
Q Consensus 68 ~~l~l~~~~~~v~~~~ 83 (586)
.||+++.++++|.+|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555666665543
No 10
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=10.00 E-value=94 Score=26.96 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=39.9
Q ss_pred CCCCCCCCCChhhhcccccccCceeeeceeecCCCCCCCCCCcCChhcHHHH-hcCCcEEEEEEeeCCCcccCCC---cc
Q 007884 225 GGSDFGGYPSLKQRNGSYEIKESMTVHCGFVKGSRPGRQSGFDLDEFDLTEL-EQFHDVIVASAIFGNYDLIQQP---KK 300 (586)
Q Consensus 225 ~~~~FgG~~sl~~R~~sF~~~~~~~vhCGF~~g~~p~~~tGfdi~~~D~~~m-~~C~kVVVYTAIFGnYD~L~qP---~~ 300 (586)
.++.+||...-.+|. ..-.+..+| |+.+ =-+++++.|+..+ +++..|+ |.-+.++-+ .+
T Consensus 3 ~g~~~~g~~~~~~~~--~~~~~~~~v---~V~n------Lp~~~te~dl~~~F~~~g~v~------g~v~~v~i~~d~~g 65 (123)
T 2dha_A 3 SGSSGGGTSNEVAQF--LSKENQVIV---RMRG------LPFTATAEEVVAFFGQHCPIT------GGKEGILFVTYPDG 65 (123)
T ss_dssp CCSSSCCCCHHHHHH--HHCCSCCEE---EECS------CCTTCCHHHHHHHHHTTSCCT------TGGGGEEEEECTTS
T ss_pred CCCCCCCCchhHHhh--ccCCCCCEE---EEeC------CCCCCCHHHHHHHHHhhCCcc------CCcceEEEEECCCC
Confidence 478899975544443 222333444 4443 1278899887765 5554221 111122111 12
Q ss_pred cCccccCCccEEEEechhhH
Q 007884 301 ISQAARQNVPFYMFVDEETE 320 (586)
Q Consensus 301 Is~~s~d~VCFimFTDe~tl 320 (586)
- .+.++|+.|.|.+..
T Consensus 66 r----~~G~aFV~F~~~~~A 81 (123)
T 2dha_A 66 R----PTGDAFVLFACEEYA 81 (123)
T ss_dssp C----EEEEEEECCSSHHHH
T ss_pred C----EeeEEEEEECCHHHH
Confidence 1 247899999887655
Done!