BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007886
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X1N|A Chain A, Structure Determination And Refinement At 1.8 A Resolution
Of Disproportionating Enzyme From Potato
Length = 524
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/519 (78%), Positives = 466/519 (89%)
Query: 68 GQDLPDDYEEWTPKPDPRDRRRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVW 127
G+D P DY +W PK DP DRRRAG+LLHPTSF GPYGIGD G +AF+F+DWLH AGCS+W
Sbjct: 6 GEDFPIDYADWLPKRDPNDRRRAGILLHPTSFPGPYGIGDLGPQAFKFLDWLHLAGCSLW 65
Query: 128 QVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVKDGLLAKAELPQPIDAERVNFA 187
QVLPLVPPG++ NE+GSPYSGQDANCGNTLLISLEELV DGLL ELP+P+ +RVN++
Sbjct: 66 QVLPLVPPGKRGNEDGSPYSGQDANCGNTLLISLEELVDDGLLKMEELPEPLPTDRVNYS 125
Query: 188 AVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWY 247
++++KDPLI KAA+RL+ S+GELK QLENF +DP+ISSWLEDAAYFAAID+S+NT SWY
Sbjct: 126 TISEIKDPLITKAAKRLLSSEGELKDQLENFRRDPNISSWLEDAAYFAAIDNSVNTISWY 185
Query: 248 LWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIY 307
WPE LKNRHLAALEE+YQS+KDFID+FIAQQFLFQRQW+KVR+YA+ KGISIMGDMPIY
Sbjct: 186 DWPEPLKNRHLAALEEVYQSEKDFIDIFIAQQFLFQRQWKKVRDYARSKGISIMGDMPIY 245
Query: 308 VGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWI 367
VGYHSADVWANKK FLLNR+GFPL VSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWW+
Sbjct: 246 VGYHSADVWANKKQFLLNRKGFPLIVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWV 305
Query: 368 HRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINI 427
RI+RA DL+DEFRIDHFRGFAGFWAVPSE K+A+ GRWKVGPGK LFDAI ++VG INI
Sbjct: 306 RRIQRATDLFDEFRIDHFRGFAGFWAVPSEEKIAILGRWKVGPGKPLFDAILQAVGKINI 365
Query: 428 IAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDTI 487
IAEDLGVITEDVVQLRKSI APGMAVLQF FGSD++NPHLPHNHE+NQVVYTGTHDNDTI
Sbjct: 366 IAEDLGVITEDVVQLRKSIEAPGMAVLQFAFGSDAENPHLPHNHEQNQVVYTGTHDNDTI 425
Query: 488 RSWWDTSKNEEKSNVMKYLSISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMN 547
R WWDT EEKSNV+KYLS EE++IS LI+ A+SSVA+ A+IP+QD+L LG +RMN
Sbjct: 426 RGWWDTLPQEEKSNVLKYLSNIEEEEISRGLIEGAVSSVARIAIIPMQDVLGLGSDSRMN 485
Query: 548 IPATQFGNWSWRIPSSTSFDRLETEATKLRDLLSTYGRL 586
IPATQFGNWSWRIPSSTSFD L+ EA KLRD+L+TYGRL
Sbjct: 486 IPATQFGNWSWRIPSSTSFDNLDAEAKKLRDILATYGRL 524
>pdb|1TZ7|A Chain A, Aquifex Aeolicus Amylomaltase
pdb|1TZ7|B Chain B, Aquifex Aeolicus Amylomaltase
Length = 505
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/499 (42%), Positives = 294/499 (58%), Gaps = 18/499 (3%)
Query: 88 RRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYS 147
R AG+LLH TS PYGIGD G EA+RF+D+L + G S+WQVLPL P +A SPYS
Sbjct: 22 RLAGILLHVTSLPSPYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAG--NSPYS 79
Query: 148 GQDANCGNTLLISLEELVKDGLLAKAELPQPIDAERVNFAAVADLKDPLIAKAAERLIQS 207
GN +LI EEL+++ L+ + +L + E + + V + K L+ KA + +
Sbjct: 80 SNSLFAGNYVLIDPEELLEEDLIKERDLKRFPLGEAL-YEVVYEYKKELLEKAFKNFRRF 138
Query: 208 DGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIYQS 267
+ LE+F K+ S WL D A + AI + WY W E LK R AL+ +
Sbjct: 139 E-----LLEDFLKEHSY--WLRDYALYMAIKEEEGK-EWYEWDEELKRREKEALKRVLNK 190
Query: 268 KKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRR 327
K + QF+F +QW+K+R YA+ +GISI+GD+P+Y Y SADVW N + F L+
Sbjct: 191 LKGRFYFHVFVQFVFFKQWEKLRRYARERGISIVGDLPMYPSYSSADVWTNPELFKLDGD 250
Query: 328 GFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRG 387
PL V+GVPPD FS+TGQLWG+P+Y+W+ EK+GF WWI R+ L+D R+DHFRG
Sbjct: 251 LKPLFVAGVPPDFFSKTGQLWGNPVYNWEEHEKEGFRWWIRRVLHNLKLFDFLRLDHFRG 310
Query: 388 FAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRKSIG 447
F +W VP + A++GRW PGK+LF + IAEDLG IT++V LR++
Sbjct: 311 FEAYWEVPYGEETAVNGRWVKAPGKTLFKKLLSYFPKNPFIAEDLGFITDEVRYLRETFK 370
Query: 448 APGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDTIRSWWDTSKNEEKSNVMKYLS 507
PG V++F F D ++ HLPHN E N V YT THD IR W++ E + + +YL
Sbjct: 371 IPGSRVIEFAF-YDKESEHLPHNVEENNVYYTSTHDLPPIRGWFENLGEESRKRLFEYLG 429
Query: 508 IS-EEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFGNWSWRIPSSTSF 566
+E+ ++ +LI+ L S A+ A+I +QD+L LG ARMN P FGNW WRI +
Sbjct: 430 REIKEEKVNEELIRLVLISRAKFAIIQMQDLLNLGNEARMNYPGRPFGNWRWRIKEDYT- 488
Query: 567 DRLETEATKLRDLLSTYGR 585
+ ++ LL YGR
Sbjct: 489 ----QKKEFIKKLLGIYGR 503
>pdb|2X1I|A Chain A, Glycoside Hydrolase Family 77 4-Alpha-Glucanotransferase
From Thermus Brockianus
Length = 500
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/506 (41%), Positives = 286/506 (56%), Gaps = 23/506 (4%)
Query: 91 GVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQD 150
G+LLHPTS GP+G+G G EA F+ +L +AG WQVLPL P G SPY
Sbjct: 8 GLLLHPTSLPGPWGVGVLGEEARGFLRFLKEAGARYWQVLPLGPTGYG----DSPYQSFS 63
Query: 151 ANCGNTLLISLEELVKDGLLAKAELPQPIDAE-RVNFAAVADLKDPLIAKAAERLIQ-SD 208
A GN LI L LV G + L P E RV++ + K P + A + Q +
Sbjct: 64 AFAGNPYLIDLRPLVDRGFV---RLEDPGFPEGRVDYGLLYAWKWPALRAAFQGFRQKAS 120
Query: 209 GELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIYQSK 268
E K F ++ + WL D A F + W WP +L+ R AL+E S
Sbjct: 121 PEEKEDFARFQEEEAW--WLRDYALFMTLKSHHGGLPWNAWPLALRTREERALKEAEASL 178
Query: 269 KDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRG 328
+ I Q+LF RQW ++ A+ GI+ +GDMPI+V SA+VWA+ + F L+ G
Sbjct: 179 AEEIAFHAFTQWLFFRQWGALKEEAEALGIAFIGDMPIFVAEDSAEVWAHPEWFHLDEEG 238
Query: 329 FPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGF 388
P V+GVPPD FSETGQ WG+PLY W+ +E++GFS+WI R+R+A +L+ RIDHFRGF
Sbjct: 239 RPTVVAGVPPDYFSETGQRWGNPLYRWEVLEEEGFSFWIARLRKALELFHLVRIDHFRGF 298
Query: 389 AGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRKSIGA 448
+W +P+ A++GRW PG+ LF I + G I I+AEDLGVIT +V LR G
Sbjct: 299 EAYWEIPASCPTAVEGRWVKAPGEKLFARIQEAFGRIPILAEDLGVITPEVEALRDRFGL 358
Query: 449 PGMAVLQFGFGSDSKNPHLPHNHERNQ--VVYTGTHDNDTIRSWWDTSKNEEKSNVMKYL 506
PGM VLQF F + +NP LPHN+ + VVYTGTHDNDT W+ T+ E+ + +YL
Sbjct: 359 PGMKVLQFAFDNGMENPFLPHNYPEHGRVVVYTGTHDNDTTLGWYRTATPHERDFLKRYL 418
Query: 507 -----SISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFGNWSWRI- 560
+ EE ++ W L++ ++S A+ AV P+QD+L LG ARMN P GNW+WR+
Sbjct: 419 ADWGITFREEAEVPWALMRLGMASRARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLR 478
Query: 561 PSSTSFDRLETEATKLRDLLSTYGRL 586
P E +L L GR+
Sbjct: 479 PGEIK----EEHGERLLSLAEATGRV 500
>pdb|1FP8|A Chain A, Structure Of The Amylomaltase From Thermus Thermophilus
Hb8 In Space Group P21212
pdb|1FP9|A Chain A, Structure Of Amylomaltase From Thermus Thermophilus Hb8 In
Space Group C2
Length = 500
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/504 (41%), Positives = 282/504 (55%), Gaps = 26/504 (5%)
Query: 88 RRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYS 147
R G+LLHPTS GPYG+G G EA F+ +L +AG WQVLPL P G SPY
Sbjct: 5 RAFGLLLHPTSLPGPYGVGVLGQEARDFLRFLKEAGGRYWQVLPLGPTGYG----DSPYQ 60
Query: 148 GQDANCGNTLLISLEELVKDGL--LAKAELPQPIDAERVNFAAVADLKDPLIAKAAERLI 205
A GN LI L L + G L PQ RV++ + K P + +A
Sbjct: 61 SFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQ----GRVDYGLLYAWKWPALKEAFRGFK 116
Query: 206 Q-SDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEI 264
+ + E + F + + WLED A F A+ + W WP L+ R AL E
Sbjct: 117 EKASPEEREAFAAFREREAW--WLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREA 174
Query: 265 YQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLL 324
+ + + Q+LF RQW ++ A+ GI I+GDMPI+V SA+VWA+ + F L
Sbjct: 175 KSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHL 234
Query: 325 NRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDH 384
+ G P V+GVPPD FSETGQ WG+PLY W +E++GFS+WI R+ +A +L+ RIDH
Sbjct: 235 DEEGRPTVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDH 294
Query: 385 FRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRK 444
FRGF +W +P+ A++GRW PG+ LF I G + ++AEDLGVIT +V LR
Sbjct: 295 FRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRD 354
Query: 445 SIGAPGMAVLQFGFGSDSKNPHLPHNHERNQ--VVYTGTHDNDTIRSWWDTSKNEEKSNV 502
G PGM VLQF F +NP LPHN+ + VVYTGTHDNDT W+ T+ EK+ +
Sbjct: 355 RFGLPGMKVLQFAFDDGMENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFM 414
Query: 503 MKYL-----SISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFGNWS 557
+YL + EE+++ W L+ + SVA+ AV P+QD+L LG ARMN P GNW+
Sbjct: 415 ARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWA 474
Query: 558 WRI------PSSTSFDRLETEATK 575
WR+ P + R EAT+
Sbjct: 475 WRLLPGELSPEHGARLRAMAEATE 498
>pdb|1CWY|A Chain A, Crystal Structure Of Amylomaltase From Thermus Aquaticus,
A Glycosyltransferase Catalysing The Production Of Large
Cyclic Glucans
pdb|1ESW|A Chain A, X-Ray Structure Of Acarbose Bound To Amylomaltase From
Thermus Aquaticus. Implications For The Synthesis Of
Large Cyclic Glucans
Length = 500
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/504 (41%), Positives = 282/504 (55%), Gaps = 26/504 (5%)
Query: 88 RRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYS 147
R G+LLHPTS GPYG+G G EA F+ +L +AG WQVLPL P G SPY
Sbjct: 5 RAFGLLLHPTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYG----DSPYQ 60
Query: 148 GQDANCGNTLLISLEELVKDGL--LAKAELPQPIDAERVNFAAVADLKDPLIAKAAERLI 205
A GN LI L L + G L PQ RV++ + K P + +A
Sbjct: 61 SFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQ----GRVDYGLLYAWKWPALKEAFRGFK 116
Query: 206 Q-SDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEI 264
+ + E + F + + WLED A F A+ + W WP L+ R AL E
Sbjct: 117 EKASPEEREAFAAFREREAW--WLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREA 174
Query: 265 YQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLL 324
+ + + Q+LF RQW ++ A+ GI I+GDMPI+V SA+VWA+ + F L
Sbjct: 175 KSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHL 234
Query: 325 NRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDH 384
+ G P V+GVPPD FSETGQ WG+PLY W +E++GFS+WI R+ +A +L+ RIDH
Sbjct: 235 DEEGRPTVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDH 294
Query: 385 FRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRK 444
FRGF +W +P+ A++GRW PG+ LF I G + ++AEDLGVIT +V LR
Sbjct: 295 FRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRD 354
Query: 445 SIGAPGMAVLQFGFGSDSKNPHLPHNHERNQ--VVYTGTHDNDTIRSWWDTSKNEEKSNV 502
G PGM VLQF F +NP LPHN+ + VVYTGTHDNDT W+ T+ EK+ +
Sbjct: 355 RFGLPGMKVLQFAFDDGMENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFM 414
Query: 503 MKYL-----SISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFGNWS 557
+YL + EE+++ W L+ + SVA+ AV P+QD+L LG ARMN P GNW+
Sbjct: 415 ARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWA 474
Query: 558 WRI------PSSTSFDRLETEATK 575
WR+ P + R EAT+
Sbjct: 475 WRLLPGELSPEHGARLRAMAEATE 498
>pdb|2OWC|A Chain A, Structure Of A Covalent Intermediate In Thermus
Thermophilus Amylomaltase
pdb|2OWW|A Chain A, Covalent Intermediate In Amylomaltase In Complex With The
Acceptor Analog 4-Deoxyglucose
pdb|2OWX|A Chain A, Thermus Thermophilus Amylomaltase At Ph 5.6
Length = 502
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/504 (41%), Positives = 282/504 (55%), Gaps = 27/504 (5%)
Query: 88 RRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYS 147
R G+LLHPTS GPYG+G G EA F+ +L +AG WQVLPL P G SPY
Sbjct: 8 RAFGLLLHPTSLPGPYGVGVLGQEARDFLRFLKEAGGRYWQVLPLGPTGYG----DSPYQ 63
Query: 148 GQDANCGNTLLISLEELVKDGL--LAKAELPQPIDAERVNFAAVADLKDPLIAKAAERLI 205
A GN LI L L + G L PQ RV++ + K P + +A
Sbjct: 64 SFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQ----GRVDYGLLYAWKWPALKEAFRGFK 119
Query: 206 Q-SDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEI 264
+ + E + F + + WLED A F A+ + W WP L+ R AL E
Sbjct: 120 EKASPEEREAFAAFREREAW--WLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREA 177
Query: 265 YQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLL 324
+ + + Q+LF RQW ++ A+ GI I+GDMPI+V SA+VWA+ + F L
Sbjct: 178 KSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHL 237
Query: 325 NRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDH 384
+ G P V+GVPPD FSETGQ WG+PLY W +E++GFS+WI R+ +A +L+ RIDH
Sbjct: 238 DEEGRPTVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDH 297
Query: 385 FRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRK 444
FRGF +W +P+ A++GRW PG+ LF I G + ++AEDLGVIT +V LR
Sbjct: 298 FRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRD 357
Query: 445 SIGAPGMAVLQFGFGSDSKNPHLPHNHERNQ--VVYTGTHDNDTIRSWWDTSKNEEKSNV 502
G PGM VLQF F +NP LPHN+ + VVYTGTHDNDT W+ T+ EK+ +
Sbjct: 358 RFGLPGMKVLQFAF-DXMENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFM 416
Query: 503 MKYL-----SISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFGNWS 557
+YL + EE+++ W L+ + SVA+ AV P+QD+L LG ARMN P GNW+
Sbjct: 417 ARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWA 476
Query: 558 WRI------PSSTSFDRLETEATK 575
WR+ P + R EAT+
Sbjct: 477 WRLLPGELSPEHGARLRAMAEATE 500
>pdb|3H6Q|A Chain A, Macrocypin, A Beta-Trefoil Cysteine Protease Inhibitor
Length = 169
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 19/91 (20%)
Query: 365 WWIHRIRRA-RDLYD--EFRIDHFRGFAGFWA---VPSEAKVAMDGR-----------WK 407
WWI R +A D+Y EFRID+ G W+ V +E V + R W+
Sbjct: 52 WWIARDPQAGDDMYTITEFRIDN--SIPGQWSRSPVETEVPVYLYDRIKAEETGYTCAWR 109
Query: 408 VGPGKSLFDAIFRSVGNINIIAEDLGVITED 438
+ P D ++ VGN+ I + D + E+
Sbjct: 110 IQPADHGADGVYHIVGNVRIGSTDWADLREE 140
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 298 ISIMGDMPIYVGYHSADVWANKKH----FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLY 353
++++ +P YV + D + + + FL +P +V G PD F E L+
Sbjct: 124 LAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYE------GCLF 177
Query: 354 DWKAMEKDGF 363
W A DGF
Sbjct: 178 GWGATGADGF 187
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 298 ISIMGDMPIYVGYHSADVWANKKH----FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLY 353
++++ +P YV + D + + + FL +P +V G PD F E L+
Sbjct: 124 LAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYE------GCLF 177
Query: 354 DWKAMEKDGF 363
W A DGF
Sbjct: 178 GWGATGADGF 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,620,185
Number of Sequences: 62578
Number of extensions: 775622
Number of successful extensions: 1928
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1901
Number of HSP's gapped (non-prelim): 10
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)