Query 007886
Match_columns 586
No_of_seqs 203 out of 1174
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:39:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02635 disproportionating en 100.0 3E-155 8E-160 1273.1 51.4 520 65-585 6-525 (538)
2 PRK14508 4-alpha-glucanotransf 100.0 4E-146 8E-151 1199.7 50.6 491 86-586 3-497 (497)
3 TIGR00217 malQ 4-alpha-glucano 100.0 1E-142 3E-147 1174.2 47.7 491 86-585 12-513 (513)
4 PRK11052 malQ 4-alpha-glucanot 100.0 1E-139 2E-144 1182.4 48.7 535 29-582 51-688 (695)
5 PF02446 Glyco_hydro_77: 4-alp 100.0 3E-137 8E-142 1132.7 39.1 476 94-583 1-496 (496)
6 PRK14507 putative bifunctional 100.0 6E-133 1E-137 1190.9 44.0 489 67-570 129-705 (1693)
7 PRK14510 putative bifunctional 100.0 2E-130 4E-135 1165.3 47.2 476 86-586 721-1221(1221)
8 COG1640 MalQ 4-alpha-glucanotr 100.0 5E-129 1E-133 1053.3 43.1 486 86-585 12-514 (520)
9 PLN03236 4-alpha-glucanotransf 100.0 3E-123 7E-128 1044.1 43.5 510 60-585 35-741 (745)
10 PLN02950 4-alpha-glucanotransf 100.0 1E-116 2E-121 1018.2 40.8 471 86-571 258-901 (909)
11 PRK12313 glycogen branching en 97.2 0.0091 2E-07 69.0 16.5 134 286-437 222-368 (633)
12 PLN02447 1,4-alpha-glucan-bran 96.7 0.02 4.4E-07 67.1 13.6 134 286-437 302-452 (758)
13 PRK05402 glycogen branching en 96.6 0.047 1E-06 64.2 16.4 32 103-134 259-290 (726)
14 PRK14705 glycogen branching en 96.6 0.051 1.1E-06 66.8 16.7 134 286-437 817-964 (1224)
15 PF00128 Alpha-amylase: Alpha 94.6 0.069 1.5E-06 54.1 6.4 137 284-447 52-214 (316)
16 smart00642 Aamy Alpha-amylase 93.9 0.14 3.1E-06 49.3 6.5 71 93-165 3-73 (166)
17 PRK03705 glycogen debranching 93.9 0.21 4.6E-06 58.1 9.1 180 284-491 242-451 (658)
18 TIGR02104 pulA_typeI pullulana 93.7 0.64 1.4E-05 53.6 12.4 23 284-306 229-251 (605)
19 TIGR02100 glgX_debranch glycog 92.9 0.95 2.1E-05 53.1 12.3 122 284-433 245-382 (688)
20 PRK09441 cytoplasmic alpha-amy 92.8 0.87 1.9E-05 51.0 11.4 46 89-135 2-47 (479)
21 TIGR02102 pullulan_Gpos pullul 91.7 0.87 1.9E-05 56.0 10.3 22 285-306 556-577 (1111)
22 PLN02361 alpha-amylase 91.4 3.7 8.1E-05 45.2 14.0 22 285-306 77-98 (401)
23 TIGR01515 branching_enzym alph 89.5 1.9 4.2E-05 49.9 10.3 134 285-436 207-354 (613)
24 PLN00196 alpha-amylase; Provis 89.5 5 0.00011 44.6 13.1 43 90-133 24-67 (428)
25 PRK14706 glycogen branching en 87.9 2.4 5.1E-05 49.5 9.6 134 284-434 217-361 (639)
26 PF14871 GHL6: Hypothetical gl 87.6 2.1 4.4E-05 40.0 7.2 78 286-377 46-123 (132)
27 PRK10785 maltodextrin glucosid 86.5 2.9 6.2E-05 48.3 9.2 129 284-435 226-377 (598)
28 TIGR02403 trehalose_treC alpha 85.7 1.2 2.6E-05 50.8 5.6 58 102-164 20-77 (543)
29 PLN03244 alpha-amylase; Provis 83.9 6.8 0.00015 46.6 10.6 136 283-437 440-592 (872)
30 TIGR02456 treS_nterm trehalose 83.9 5.9 0.00013 45.1 10.1 32 103-135 22-53 (539)
31 TIGR02103 pullul_strch alpha-1 83.8 10 0.00023 45.9 12.3 27 285-313 405-431 (898)
32 PRK14510 putative bifunctional 83.3 6.8 0.00015 49.1 10.9 23 284-306 247-269 (1221)
33 TIGR02403 trehalose_treC alpha 81.2 10 0.00022 43.4 10.6 29 284-314 75-103 (543)
34 PLN02960 alpha-amylase 80.5 3.8 8.3E-05 49.2 7.0 60 102-164 409-468 (897)
35 TIGR02402 trehalose_TreZ malto 79.1 7.1 0.00015 44.7 8.5 112 285-433 161-283 (542)
36 PLN02960 alpha-amylase 78.8 11 0.00025 45.3 10.1 137 284-439 466-619 (897)
37 PRK10933 trehalose-6-phosphate 77.7 3.7 8E-05 47.0 5.7 57 103-164 27-83 (551)
38 TIGR01515 branching_enzym alph 77.3 4.6 9.9E-05 46.8 6.4 57 106-165 153-209 (613)
39 PLN02784 alpha-amylase 77.1 28 0.0006 42.1 12.6 25 282-306 566-590 (894)
40 COG1640 MalQ 4-alpha-glucanotr 76.8 0.41 8.8E-06 54.1 -2.3 92 300-397 71-177 (520)
41 TIGR02456 treS_nterm trehalose 74.5 4.7 0.0001 46.0 5.4 46 376-431 190-240 (539)
42 TIGR02402 trehalose_TreZ malto 71.7 6 0.00013 45.3 5.4 56 105-164 107-162 (542)
43 PRK12568 glycogen branching en 70.6 8.5 0.00018 45.6 6.4 66 94-162 252-319 (730)
44 PF00128 Alpha-amylase: Alpha 70.3 3.3 7.1E-05 41.9 2.6 54 106-164 1-54 (316)
45 PRK12568 glycogen branching en 67.1 28 0.0006 41.5 9.6 133 284-435 319-466 (730)
46 COG0296 GlgB 1,4-alpha-glucan 66.9 8.7 0.00019 44.7 5.4 49 106-156 162-213 (628)
47 PRK10785 maltodextrin glucosid 65.7 9.1 0.0002 44.3 5.3 54 106-165 176-229 (598)
48 COG0708 XthA Exonuclease III [ 62.4 5.3 0.00011 41.6 2.3 79 295-387 140-226 (261)
49 COG0366 AmyA Glycosidases [Car 58.0 15 0.00032 40.5 5.0 59 102-165 22-80 (505)
50 PRK10933 trehalose-6-phosphate 54.5 38 0.00082 38.9 7.7 28 284-313 81-108 (551)
51 PRK14706 glycogen branching en 53.8 25 0.00053 41.3 6.1 58 105-165 163-220 (639)
52 PF14701 hDGE_amylase: glucano 53.1 17 0.00037 40.4 4.5 52 104-160 17-68 (423)
53 COG2904 Uncharacterized protei 43.9 6.3 0.00014 36.5 -0.5 44 288-335 31-75 (137)
54 PF02375 JmjN: jmjN domain; I 43.0 18 0.00038 26.2 1.8 32 351-382 1-32 (34)
55 smart00545 JmjN Small domain f 42.5 31 0.00067 26.1 3.1 33 350-382 2-34 (42)
56 cd06563 GH20_chitobiase-like T 42.3 79 0.0017 34.1 7.5 82 280-378 82-165 (357)
57 PF00479 G6PD_N: Glucose-6-pho 39.9 9.3 0.0002 37.6 -0.1 22 366-387 156-177 (183)
58 PRK09505 malS alpha-amylase; R 38.8 92 0.002 36.9 7.8 94 283-385 291-463 (683)
59 cd06592 GH31_glucosidase_KIAA1 36.3 73 0.0016 33.5 5.9 75 288-375 74-152 (303)
60 KOG0471 Alpha-amylase [Carbohy 36.1 1.1E+02 0.0023 35.4 7.6 109 280-391 84-221 (545)
61 cd06568 GH20_SpHex_like A subg 36.1 99 0.0021 33.2 6.9 82 280-378 71-154 (329)
62 cd06602 GH31_MGAM_SI_GAA This 32.7 1.1E+02 0.0025 32.7 6.8 73 287-376 69-153 (339)
63 PF14784 ECIST_Cterm: C-termin 32.3 26 0.00057 32.7 1.6 22 473-494 88-109 (126)
64 TIGR01531 glyc_debranch glycog 32.3 53 0.0012 41.8 4.6 62 93-159 112-177 (1464)
65 COG1523 PulA Type II secretory 30.4 37 0.0008 40.2 2.7 54 106-160 195-256 (697)
66 COG0296 GlgB 1,4-alpha-glucan 30.2 1.2E+02 0.0027 35.5 6.9 90 285-389 215-309 (628)
67 cd02742 GH20_hexosaminidase Be 29.3 1.3E+02 0.0029 31.6 6.5 77 280-378 68-148 (303)
68 smart00642 Aamy Alpha-amylase 29.2 57 0.0012 31.4 3.4 23 284-306 70-92 (166)
69 TIGR02401 trehalose_TreY malto 28.6 95 0.0021 37.6 5.7 56 105-164 12-67 (825)
70 cd06597 GH31_transferase_CtsY 28.4 1.2E+02 0.0026 32.6 6.1 73 287-376 88-175 (340)
71 KOG3625 Alpha amylase [Carbohy 26.8 1E+02 0.0022 37.8 5.3 108 352-486 511-638 (1521)
72 TIGR02100 glgX_debranch glycog 24.9 79 0.0017 37.5 4.2 56 104-159 177-239 (688)
73 cd06591 GH31_xylosidase_XylS X 24.7 2E+02 0.0043 30.5 6.9 83 290-399 72-160 (319)
74 TIGR02768 TraA_Ti Ti-type conj 23.9 1.8E+02 0.0039 34.8 7.0 22 364-385 178-200 (744)
75 cd06565 GH20_GcnA-like Glycosy 23.6 1.9E+02 0.0041 30.5 6.4 74 282-379 58-132 (301)
76 cd06570 GH20_chitobiase-like_1 23.6 1.8E+02 0.0038 31.1 6.1 102 280-410 64-167 (311)
77 PF01055 Glyco_hydro_31: Glyco 23.5 75 0.0016 35.0 3.5 80 286-377 85-169 (441)
78 PRK09441 cytoplasmic alpha-amy 23.4 1.7E+02 0.0037 32.9 6.3 96 375-489 225-336 (479)
79 cd06593 GH31_xylosidase_YicI Y 21.3 2.2E+02 0.0047 29.8 6.3 75 288-375 70-147 (308)
80 PRK14511 maltooligosyl trehalo 21.1 1.6E+02 0.0035 35.9 5.8 55 106-164 17-71 (879)
81 PRK13840 sucrose phosphorylase 21.1 1.7E+02 0.0037 33.4 5.7 62 100-166 11-73 (495)
82 PRK12853 glucose-6-phosphate 1 20.9 40 0.00086 38.3 0.7 24 364-387 155-178 (482)
83 cd06599 GH31_glycosidase_Aec37 20.8 1.8E+02 0.004 30.8 5.7 76 290-376 79-156 (317)
84 KOG3520 Predicted guanine nucl 20.4 1.1E+02 0.0024 38.2 4.2 36 225-279 479-515 (1167)
No 1
>PLN02635 disproportionating enzyme
Probab=100.00 E-value=3.5e-155 Score=1273.09 Aligned_cols=520 Identities=75% Similarity=1.280 Sum_probs=486.8
Q ss_pred cccCCCCCCCccccccCCCCCCCceeEEEEecCccCCCCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCC
Q 007886 65 ASVGQDLPDDYEEWTPKPDPRDRRRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGS 144 (586)
Q Consensus 65 ~~~p~~lP~gyh~~~~~~~~~~~R~~Gvl~~l~SLrs~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~S 144 (586)
..+..++|.-++..+|.- ....|++||++|+|||||+|||||||++|++||||++++|++|||||||||+++..+.++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~R~~Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~S 84 (538)
T PLN02635 6 LSLGEDLPPDYEDWLPKR-DAARRRAGILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGS 84 (538)
T ss_pred CCCcccCCccccccCCcc-cCCCcceEEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCC
Confidence 345568888888888762 2467999999999999999999999999999999999999999999999999987778999
Q ss_pred CCCcccccccccccccchhhhhccCCCcccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhCCCC
Q 007886 145 PYSGQDANCGNTLLISLEELVKDGLLAKAELPQPIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSI 224 (586)
Q Consensus 145 PY~p~Sr~alNPlyI~le~l~e~~~l~~~~l~~~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~ 224 (586)
||+|+||||+||+|||++.|++.|+++.+++....+.+.|||+.|+++|.++|+++|.+|......++++|++||+++|.
T Consensus 85 PYs~~S~fa~NPlyI~le~L~e~g~l~~~~l~~~~~~~~VDY~~v~~~K~~~L~~a~~~f~~~~~~~~~~F~~F~~~~g~ 164 (538)
T PLN02635 85 PYSGQDANCGNTLLISLEELVKDGLLEEDELPEPVPVGKVDFSAVAELKDPLIAKAAERLLLSDGELKEELEDFRKDPEI 164 (538)
T ss_pred CcccccccccChhhcCHHhhhcccccChhhHhhhcCCCcccHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCCC
Confidence 99999999999999999999999999887766545577999999999999999999999865433456799999988422
Q ss_pred CchhhHhHHHHHHHhhcCCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeec
Q 007886 225 SSWLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDM 304 (586)
Q Consensus 225 ~~wL~~yA~f~aL~~~~~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~GI~L~gDL 304 (586)
+.||++||+||||++++++.+|++||+++++++++++++++++++++|+||+|+||+|++||+++|+||+++||+|||||
T Consensus 165 ~~WL~dyAlF~aLk~~~~~~~W~~WPe~~~~~~~~al~~~~~~~~~~i~f~~~lQ~~~~~Qw~~l~~yA~~~Gi~L~gDl 244 (538)
T PLN02635 165 SSWLEDAALFAAIDNTLNAKAWWDWPEPLRDRHPAALEAIRQSHKDFIDEFIAQQFLFQRQWQAVRSYANEKGISIIGDM 244 (538)
T ss_pred cchHHHHHHHHHHHHHhCCCCcccCCHhhccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeecc
Q 007886 305 PIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDH 384 (586)
Q Consensus 305 pigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH 384 (586)
||||++||||||+||++|++|++|.|++++|||||+||++|||||+|+|||++|+++||+||++|||++|++||+|||||
T Consensus 245 pi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH 324 (538)
T PLN02635 245 PIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMAKDGYSWWAGRMRRALELYDEFRIDH 324 (538)
T ss_pred ecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeEEeCCCCCCCCCceeeCCchhHHHHHHHHcCCCcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeecCCCCC
Q 007886 385 FRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKN 464 (586)
Q Consensus 385 ~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~ale~~~~~~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~~~ 464 (586)
||||+||||||+|++||.+|+||+||+++||.+|++++++|+|||||||+||++|+++|+++||||||||||+|++++++
T Consensus 325 f~Gf~r~W~IP~g~~ta~~G~wv~~Pg~~l~~~l~~~~~~~~vIaEDLG~I~~~V~~l~~~~g~pGmkVl~F~f~~~~~~ 404 (538)
T PLN02635 325 FRGFAGYWAVPADAKTAMNGRWKVGPGKSFFDAIKKAVGKIDIIAEDLGVITEDVVELRKAIGAPGMAVLQFAFGGDADN 404 (538)
T ss_pred hhhhheeeeccCCCCCCCCCeeeeCCHHHHHHHHHHHcCCCCEEEeeCCCCCHHHHHHHHHcCCCCCEEEEeeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876667
Q ss_pred CCCCCCCCCCcEEecCCCchhhHHHHHhCCCHHHHHHHHHHhcccCCChhHHHHHHHHHhccccccccchhhhhccCCCC
Q 007886 465 PHLPHNHERNQVVYTGTHDNDTIRSWWDTSKNEEKSNVMKYLSISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSA 544 (586)
Q Consensus 465 ~~~p~~~~~~sva~~~THD~~Tl~Gww~~~d~~~r~~l~~~L~~~~~~~~~~~li~~al~s~a~~~i~~lqDlL~lg~~~ 544 (586)
+++|++|+++||||||||||||++|||++.+.++|+.+.+||+....+++++++|+.+++|+|.++|+||||+|+||+++
T Consensus 405 ~~~P~~y~~~~v~ytgTHD~~Tl~GW~~~~d~~~r~~~~~yl~~~~~~~~~~~li~~a~~s~a~~~i~p~QD~Lgl~~~a 484 (538)
T PLN02635 405 PHLPHNHEENQVVYPGTHDNDTVVGWWDKLDEEEKSKVRKYLGIADEDDIAWELIRAALSSVARTAVIPMQDVLGLDNSA 484 (538)
T ss_pred CCCcccccccceeeecCCCcccHHHHHhcCCHHHHHHHHHHhCCCCccchhHHHHHHHHHhHHHHHHhhHHHHhCCCccc
Confidence 89999999999999999999999999999999999999999986545789999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHhCC
Q 007886 545 RMNIPATQFGNWSWRIPSSTSFDRLETEATKLRDLLSTYGR 585 (586)
Q Consensus 545 r~N~PGT~~~NW~wRlp~~~~~~~l~~~~~~l~~l~~~~~R 585 (586)
|||+|||+++||+||++...++..+++.+++|++|++.|||
T Consensus 485 RmN~Pgt~~~NW~wR~~~~~~~~~~~~~~~~l~~l~~~~~R 525 (538)
T PLN02635 485 RMNTPATQAGNWAWRIGSSGIFDSLEPEAEKLRELLHLYNR 525 (538)
T ss_pred cCcCCCCCCCCeeeecCccccccccHHHHHHHHHHHHHHCC
Confidence 99999999999999999876323223458999999999999
No 2
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=3.7e-146 Score=1199.67 Aligned_cols=491 Identities=51% Similarity=0.933 Sum_probs=461.5
Q ss_pred CCceeEEEEecCccCCCCCCccch-HHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 86 DRRRAGVLLHPTSFRGPYGIGDFG-AEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 86 ~~R~~Gvl~~l~SLrs~~GIGDfg-dla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
.+|+|||++|||||+++||||||| | +++||||++++|++||||||||+++ .++|||+|+|+||+||+||+++.|
T Consensus 3 ~~R~~Gv~~~l~SL~~~~GiGDfg~d-l~~~id~~~~~G~~~~qilPl~~~~----~~~SPY~~~S~~alnplyI~l~~l 77 (497)
T PRK14508 3 MKRKSGILLHITSLPGSYGIGDFGKG-AYEFIDFLAEAGQSYWQILPLGPTG----YGDSPYQSFSAFAGNPLLIDLEAL 77 (497)
T ss_pred CCCceEEEeccccCCCCCCCcchHHH-HHHHHHHHHHcCCCEEEEcCCCCCC----CCCCCcCcccccccChhhcChhhc
Confidence 469999999999999999999999 6 5799999999999999999999985 689999999999999999999999
Q ss_pred hhccCCCcccCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhCCCCCchhhHhHHHHHHHhhc
Q 007886 165 VKDGLLAKAELPQ---PIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSL 241 (586)
Q Consensus 165 ~e~~~l~~~~l~~---~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~ 241 (586)
+++++++.+++.. ....+.|||++|+++|.++|+++|.+|..+...++.+|++||++ +++||++||+||+|++++
T Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~vdy~~v~~~K~~~L~~af~~f~~~~~~~~~~f~~F~~~--~~~wL~~yA~F~al~~~~ 155 (497)
T PRK14508 78 VDDGLLDESDLEGLPFGSNPERVDYDLVREAKRPLLRKAFERFLRASLERAEAFEAFCEE--EAYWLDDYALFMALKEHF 155 (497)
T ss_pred cccccCCHHHHhhhhhccCccccchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHh--CccHHHHHHHHHHHHHHh
Confidence 9999998766543 33467899999999999999999999853333456799999998 479999999999999999
Q ss_pred CCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccc
Q 007886 242 NTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKH 321 (586)
Q Consensus 242 ~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~ 321 (586)
++.+|++||+++++++++++++++++|+++|+||+|+||+|++||+++|+||+++||+|||||||||++||||||++|++
T Consensus 156 ~~~~W~~WP~~~~~~~~~~~~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~l 235 (497)
T PRK14508 156 GGLPWNEWPEPLRKRDPEALAKAREELADEILYHKFLQYLFFRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPEL 235 (497)
T ss_pred CCCCcCCCCHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCCCCCC
Q 007886 322 FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVA 401 (586)
Q Consensus 322 F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta 401 (586)
|+++++|.|..++|||||+||++|||||+|+|||++|+++||+||++|||++|++||++||||||||+||||||.|+++|
T Consensus 236 F~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~~~lRIDH~~Gf~r~W~IP~~~~~a 315 (497)
T PRK14508 236 FKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYNWDALRKDGYRWWIERLRRSFKLYDIVRIDHFRGFEAYWEIPAGEKTA 315 (497)
T ss_pred hcCCCCCCcceeeeCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCCchhHHHHHHHHcCCCcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeecCCCCCCCCCCCCCCCcEEecCC
Q 007886 402 MDGRWKVGPGKSLFDAIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGT 481 (586)
Q Consensus 402 ~~G~yv~~p~~~l~~ale~~~~~~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~~~~~~p~~~~~~sva~~~T 481 (586)
..|+||+||+++||.+|..+.++|+|||||||+||++|+++|+++||+||+|++||++++++++++|++|+++|||||||
T Consensus 316 ~~G~~v~~p~~~l~~~l~~e~~~~~vigEDLG~vp~~V~~~l~~~gi~g~~Vl~f~~~~~~~~~~~p~~~~~~~v~~~~T 395 (497)
T PRK14508 316 INGRWVPGPGKDLFEAVKEELGDLPIIAEDLGVITPDVEELRDRFGFPGMKILQFAFDGDSDNPYLPHNYPRNSVVYTGT 395 (497)
T ss_pred CCCeeecCCHHHHHHHHHHHhCCCCEEEeECCCCCHHHHHHHHHcCCCccEEEEecCCCCCCCCCCCcCCCCCeEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999986555688999999999999999
Q ss_pred CchhhHHHHHhCCCHHHHHHHHHHhcccCCChhHHHHHHHHHhccccccccchhhhhccCCCCCCCCCCCCCCCcccccC
Q 007886 482 HDNDTIRSWWDTSKNEEKSNVMKYLSISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFGNWSWRIP 561 (586)
Q Consensus 482 HD~~Tl~Gww~~~d~~~r~~l~~~L~~~~~~~~~~~li~~al~s~a~~~i~~lqDlL~lg~~~r~N~PGT~~~NW~wRlp 561 (586)
|||||++|||++.+.++|+.+..+|+....+++++++++.+++|+|+++|+||||+|+++++.|||+|||+++||+|||+
T Consensus 396 HD~~Tl~gWw~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~~~r~N~PGt~~~nW~~Rl~ 475 (497)
T PRK14508 396 HDNDTTVGWWESLDPEERKRVADYLGRSSEEEIHWALIRLALASVADLAILPMQDLLGLGSEARMNTPGTVGGNWSWRLL 475 (497)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHhccCCchhHHHHHHHHHhcCCchheeeeHHHHhCCCCcCCCcCCCCCCCCCCccCC
Confidence 99999999999999999999999997534478899999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCC
Q 007886 562 SSTSFDRLETEATKLRDLLSTYGRL 586 (586)
Q Consensus 562 ~~~~~~~l~~~~~~l~~l~~~~~R~ 586 (586)
.+... .+..++|++|++.|||.
T Consensus 476 ~~~~~---~~~~~~l~~l~~~~~R~ 497 (497)
T PRK14508 476 PDDLT---DDLADRLRELTELYGRA 497 (497)
T ss_pred ccccC---HHHHHHHHHHHHHhCcC
Confidence 87532 23479999999999994
No 3
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=100.00 E-value=1.5e-142 Score=1174.19 Aligned_cols=491 Identities=35% Similarity=0.639 Sum_probs=456.6
Q ss_pred CCceeEEEEecCccCCCCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhh
Q 007886 86 DRRRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (586)
Q Consensus 86 ~~R~~Gvl~~l~SLrs~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~ 165 (586)
.+|.|||++|||||||.||||||||+|+.|+|++++.|+.+|||+||++++ +.++|||+|+||||+||+|||++.|+
T Consensus 12 ~~R~~Gvll~l~SL~s~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~---~~~ssPYs~~S~~a~NplyI~le~l~ 88 (513)
T TIGR00217 12 LKRKSGILLQLYSLPSEWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPAD---FTRSPPYSISSARALNVYYIDLEALD 88 (513)
T ss_pred CCCceEEEeccccCCCCCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCC---CCCCCCcCchhcccccHHhcChhhcc
Confidence 479999999999999999999999999999999999999999999999986 45778899999999999999999999
Q ss_pred hccCCCcccCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHhhCCCCCchhhHhHHHHHHHhhcC
Q 007886 166 KDGLLAKAELPQ--PIDAERVNFAAVADLKDPLIAKAAERLIQS-DGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLN 242 (586)
Q Consensus 166 e~~~l~~~~l~~--~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~-~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~ 242 (586)
|++++++.+... ....+.|||++|+++|+++|+++|++|... ...+..+|++||++ ++.||++||+||||+++++
T Consensus 89 e~~~l~~~~~~~~~~~~~~~VDy~~v~~~K~~~L~~a~~~f~~~~~~~~~~~f~~F~~~--~~~wL~dya~f~al~~~~~ 166 (513)
T TIGR00217 89 EFIDLPLSLLKEAELRESDRVDYSKKIALKDTALKEAFLNFINRASADEVRSFAEFKKK--QSDWLADFASFVAQKEAFF 166 (513)
T ss_pred ccccCChhHHhhhhhcCCCcccHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHh--ChhHHHHHHHHHHHHHHhC
Confidence 999988755432 234678999999999999999999999654 23456799999998 4689999999999999998
Q ss_pred ----CCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhcc
Q 007886 243 ----TFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWAN 318 (586)
Q Consensus 243 ----~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~ 318 (586)
+.+|++||+++++++++++++++++++++|+||+|+||+|++||+++|+||+++||+|||||||||++||||||+|
T Consensus 167 ~~~~~~~W~~WP~~~~~~~~~a~~~~~~~~~~ei~f~~~lQ~~~~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~ 246 (513)
T TIGR00217 167 KESKNAGWVLWDKGIQKRNEPELFKLRNILSKEIKFQEWLQWLFFSQFQALKRYANDMGIGLYGDLPVFVAYDSADVWAD 246 (513)
T ss_pred CCCCCCCcCCCCHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccC-CCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCC
Q 007886 319 KKHFLLNRR-GFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSE 397 (586)
Q Consensus 319 ~~~F~l~~~-g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g 397 (586)
|++|++|++ |.|+ ++|+|||+||++||+||+|+|||++|+++||+||++|||++|++||+|||||||||+||||||.|
T Consensus 247 ~~~F~l~~~~GaP~-~agvpPd~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~d~lRIDHf~Gf~r~w~IP~g 325 (513)
T TIGR00217 247 PELFCLRASAGAPK-PAGLGPDYFLEQGQNWGLPPYDWNVLKARGYEWWIKRLGANMQYADILRIDHFRGFVSLWWVPAG 325 (513)
T ss_pred HHHhCCCcccCCCC-CCCCCCCcccccCCCCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCC
Confidence 999999988 9999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeCCchhHHHHHHHHcCC-CcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeecCCCCCCCCCCCCCCCcE
Q 007886 398 AKVAMDGRWKVGPGKSLFDAIFRSVGN-INIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQV 476 (586)
Q Consensus 398 ~~ta~~G~yv~~p~~~l~~ale~~~~~-~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~~~~~~p~~~~~~sv 476 (586)
++||.+|+||+||+++||.+|..+.++ |+|||||||+||++|+++|+++||||||||||||++++.+.++|++|+++||
T Consensus 326 ~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaEDLG~v~~~Vr~ll~~~gipGmkVl~Fe~~~~~~~~~~P~~y~~~~v 405 (513)
T TIGR00217 326 ESTAFNGAWVHYPGDDFFNILANESKDNLKIIGEDLGTVPEEVSRLRDEFNFPGMKVLYFAFDFDSSNRNLPHNYPKNAI 405 (513)
T ss_pred CCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEeeeCCCCCHHHHHHHHHcCCCCceEeEecccCCCCCCCCcccCCcCcE
Confidence 989999999999999999988888877 9999999999999999999999999999999999877666677999999999
Q ss_pred EecCCCchhhHHHHHhCCC--HHHHHHHHHHhcccCCChhHHHHHHHHHhccccccccchhhhhccCCCCCCCCCCCCCC
Q 007886 477 VYTGTHDNDTIRSWWDTSK--NEEKSNVMKYLSISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFG 554 (586)
Q Consensus 477 a~~~THD~~Tl~Gww~~~d--~~~r~~l~~~L~~~~~~~~~~~li~~al~s~a~~~i~~lqDlL~lg~~~r~N~PGT~~~ 554 (586)
||||||||+|+.|||.+.. .++++.++.|++.....++++.+|+.+++|+|.++|+||||+|+|++++|||+|||..+
T Consensus 406 ~ytgTHD~dt~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~a~~~i~~lqDll~l~~e~r~N~PGT~~~ 485 (513)
T TIGR00217 406 VYTGTHDNDLTLGEFLGISLDDYQKRYILHYLNCLPNFYVHWALIRSAMGSVNRNVIVYLQDLIGLGDEFSANIPGTTYD 485 (513)
T ss_pred EEecCCcchhHHHHHhcCCCchHHHHHHHHHcCCCCCcchHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCcCCCCCCC
Confidence 9999999999999999877 67777888888765446788999999999999999999999999999999999999889
Q ss_pred CcccccCCCCChhhHHHHHHHHHHHHHHhCC
Q 007886 555 NWSWRIPSSTSFDRLETEATKLRDLLSTYGR 585 (586)
Q Consensus 555 NW~wRlp~~~~~~~l~~~~~~l~~l~~~~~R 585 (586)
||+|||+.+... + ....+|++|++.|||
T Consensus 486 NW~~Rl~~~~~~--~-~~~~~l~~l~~~~~r 513 (513)
T TIGR00217 486 NWIFRLLESLLD--A-FLSQNLSFITRLYGR 513 (513)
T ss_pred CcceECCccccc--h-hhhHHHHHHHHHhCc
Confidence 999999987532 1 346899999999998
No 4
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=1e-139 Score=1182.44 Aligned_cols=535 Identities=22% Similarity=0.333 Sum_probs=459.8
Q ss_pred ccccccccccCCCCccccccccccC-----Cccccc----------ceeeecccCCCCCCCccccccC------------
Q 007886 29 ATLRPRFFLCTPFAAKTSAASASCS-----SVSGNA----------AASAVASVGQDLPDDYEEWTPK------------ 81 (586)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----------~~~~~~~~p~~lP~gyh~~~~~------------ 81 (586)
...+|..++|+-|++.. +.|. .|.+++ .+++++.||.+||+|||+|...
T Consensus 51 ~~~lpp~~v~~~g~~~~----~~~~~~~~~~~~l~~E~g~~~~g~~~~~~~~~lp~~lp~Gyh~L~~~~~~~~~~~~liv 126 (695)
T PRK11052 51 VTPLPPVKVFTQGKPMQ----LPLEGSGEYSWQLTTEEGEQLQGRVTGGKALTLPADLPLGYHTLTLTQDDQRWHCRIIV 126 (695)
T ss_pred hCcCCCeEEEECCCeeE----EeecCCCceEEEEEeCCCceEeeeecccccccCCCCCCCeeEEEEEEcCCceEEEEEEE
Confidence 45688889988887765 3321 133332 2334578999999999998432
Q ss_pred -CC------CC--CCceeEEEEecCccCC--CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCccc
Q 007886 82 -PD------PR--DRRRAGVLLHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQD 150 (586)
Q Consensus 82 -~~------~~--~~R~~Gvl~~l~SLrs--~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~S 150 (586)
|. .. .+|.|||++||||||| +||||||||+ ++|+||++++|++||||||||++.|..|.++|||+|+|
T Consensus 127 aP~~~~~p~~~~~~~r~wGv~~qlySLrs~~~~GIGDfgdl-~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~S 205 (695)
T PRK11052 127 APKRCYEPQALLQGKKLWGACVQLYTLRSEHNWGIGDFGDL-KQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSS 205 (695)
T ss_pred eCCccCCchhhccCCCceEEEeccccCCCCCCCCeecHHHH-HHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCccccc
Confidence 22 21 3678999999999998 9999999995 69999999999999999999999998889999999999
Q ss_pred ccccccccccchhhhhccCCCc-------cc----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc--chhhHHHHHH
Q 007886 151 ANCGNTLLISLEELVKDGLLAK-------AE----LPQPIDAERVNFAAVADLKDPLIAKAAERLIQS--DGELKSQLEN 217 (586)
Q Consensus 151 r~alNPlyI~le~l~e~~~l~~-------~~----l~~~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~--~~~~~~~f~~ 217 (586)
|||+||+||+++.|+|...... ++ +....+.+.|||++|+++|+++|+++|.+|..+ ...++++|++
T Consensus 206 r~alNPlyI~~e~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~VDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~f~~ 285 (695)
T PRK11052 206 RRWLNVIYIDVNAVEDFQQSEEAQAWWQSAETQQRLQQARAAEWVDYSTVTALKLTALRLAFKQFAQRDKDDEQMQAFRQ 285 (695)
T ss_pred ccccChHHcCHHHHhhhhhhhhhhhhhcchhHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 9999999999999998654321 12 122234678999999999999999999998653 2346678999
Q ss_pred HhhCCCCCchhhHhHHHHHHHhhcCCC-----CCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHH
Q 007886 218 FHKDPSISSWLEDAAYFAAIDDSLNTF-----SWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNY 292 (586)
Q Consensus 218 F~~~~g~~~wL~~yA~f~aL~~~~~~~-----~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~ 292 (586)
||++ ++.||++||+||||++++++. +|++||+++++++++++++++++++++|+||+|+||+|++||+++|+|
T Consensus 286 F~~~--~g~wL~~yA~F~AL~~~~~~~~~~~~~W~~WP~~~~~~~~~a~~~~~~~~~~~v~f~~~lQ~~~~~Ql~~~~~~ 363 (695)
T PRK11052 286 FVAE--GGESLLWQAAFDALHAHLVKEDEMRWGWPVWPEEYQDVDSPAVQQFCEEHADEVDFYLWLQWLADSQFAACWQL 363 (695)
T ss_pred HHHh--CchHHHHHHHHHHHHHHhcCCCCCCCCccCCCHhhccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 469999999999999998765 799999999999999999999999999999999999999999999999
Q ss_pred HHHcCC--eEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHH
Q 007886 293 AQMKGI--SIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRI 370 (586)
Q Consensus 293 A~~~GI--~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl 370 (586)
|+++|| +|||||||||+++|||||+||++|+++ .++|||||+||++|||||+|+|||++|+++||+|||+||
T Consensus 364 A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~------~~~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl 437 (695)
T PRK11052 364 SQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLK------ASVGAPPDILGPLGQNWGLPPMDPHVLQARAYQPFIDLL 437 (695)
T ss_pred HHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCC------CcCCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHH
Confidence 999998 899999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred HHHhhhcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHHH--HHHHHcCCCcEEEcccCCCCHHHHHHHHHhCC
Q 007886 371 RRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFD--AIFRSVGNINIIAEDLGVITEDVVQLRKSIGA 448 (586)
Q Consensus 371 r~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~--ale~~~~~~~vIgEDLG~vp~~V~~~l~~~gi 448 (586)
|++|++||++||||||||+||||||.|+ ++.+|+||+||+++||. +||+++++|+|||||||+||++|+++|+++||
T Consensus 438 r~~~~~~g~lRIDH~~Gl~rlW~IP~g~-~a~~G~yv~~P~~~ll~~lales~~~~~~vIgEDLG~Vp~~Vr~~l~~~gi 516 (695)
T PRK11052 438 RANMQHCGALRIDHVMSLLRLWWIPYGE-TADQGAYVHYPVDDLLAILALESQRHRCMVIGEDLGTVPVEIVGKLRDSGV 516 (695)
T ss_pred HHHHHhCCEEEecchhhhheeeecCCCC-CCCCCeeEeCCHHHHHHHHHHHHhcCCCCEEEeeCCCCCHHHHHHHHHcCC
Confidence 9999999999999999999999999998 79999999999999998 56999999999999999999999999999999
Q ss_pred CCeEEEEeeecCCCCCCCCCCCCCCCcEEecCCCchhhHHHHHhCCCHHHHH-----------------------HHHHH
Q 007886 449 PGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDTIRSWWDTSKNEEKS-----------------------NVMKY 505 (586)
Q Consensus 449 ~G~~Vl~Fe~~~~~~~~~~p~~~~~~sva~~~THD~~Tl~Gww~~~d~~~r~-----------------------~l~~~ 505 (586)
+||+|+|||++++ ++++.|++|+++||+|||||||||++|||++.|.+.|+ +++..
T Consensus 517 ~g~~Vl~Fe~~~~-~~~~~P~~y~~~sva~t~THD~pTl~Gww~~~di~lr~~lgl~~~~~~~~~~~~~r~~~~~~l~~~ 595 (695)
T PRK11052 517 YSYKVLYFENDEE-GGFRAPAAYPEQSMATLTTHDLPTLRGYWQCDDLTLGKELGLYPDEEVLRGLYQDRERAKQGLLDA 595 (695)
T ss_pred CCcEEEEecccCC-CCCCCcccCcCCeEEECCCCCChhHHHHHhcCchHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999865 46899999999999999999999999999998865442 23444
Q ss_pred hcccC---------------CChhHHHHHHHHHhccccccccchhhhhccCCCCCCCCCCCCCC--CcccccCCCCChhh
Q 007886 506 LSISE---------------EDDISWKLIQAALSSVAQTAVIPLQDILRLGVSARMNIPATQFG--NWSWRIPSSTSFDR 568 (586)
Q Consensus 506 L~~~~---------------~~~~~~~li~~al~s~a~~~i~~lqDlL~lg~~~r~N~PGT~~~--NW~wRlp~~~~~~~ 568 (586)
|.... ...+..++++.+..|+|.++++||||+|++ .+++|+|||+++ |||+|||.+. ++
T Consensus 596 l~~~g~~~~~~~~~~~~~~~~~~l~~a~~~~la~tpS~L~~~~leD~lg~--~~~~N~PGT~~eyPNWrrrl~~~l--e~ 671 (695)
T PRK11052 596 LHKHGCLPKRAGHKASLMSMTPTLNRGLQRYVADSNSALLGLQPEDWLDM--AKPVNIPGTSDEYPNWRRKLSATL--EE 671 (695)
T ss_pred HHHcCCCCcccccccccccCCHHHHHHHHHHHhcCCchhhhcCHHHHhcC--ccCCCCCCCCCCCCCccccCCcCH--HH
Confidence 43221 122344566677789999999999999765 689999999985 9999999873 66
Q ss_pred HHH---HHHHHHHHHHH
Q 007886 569 LET---EATKLRDLLST 582 (586)
Q Consensus 569 l~~---~~~~l~~l~~~ 582 (586)
|.+ ....++.|.+.
T Consensus 672 l~~~~~~~~~~~~l~~~ 688 (695)
T PRK11052 672 IFADEGVNRLLKDLDKR 688 (695)
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 642 23444555544
No 5
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=100.00 E-value=3.5e-137 Score=1132.75 Aligned_cols=476 Identities=44% Similarity=0.811 Sum_probs=382.2
Q ss_pred EecCccCCC--CCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhhhccCCC
Q 007886 94 LHPTSFRGP--YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVKDGLLA 171 (586)
Q Consensus 94 ~~l~SLrs~--~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~e~~~l~ 171 (586)
||||||||+ |||||||+.+++|+|||+++|+++|||+||++++ +...|||+|+||||+||+||+++.|++.++++
T Consensus 1 ~~l~SLrs~~~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~---~~~~sPY~p~S~~alNPlyI~l~~l~e~~~~~ 77 (496)
T PF02446_consen 1 VPLYSLRSPRSWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTG---PGNSSPYSPSSRFALNPLYIDLEALPEFGLLD 77 (496)
T ss_dssp --GGGS-SSS--SS--SSHHHHHHHHHHHHCT--EEE----S-B----TTCTTTTSBS-SSS--GGGS-SHHHHHTTSS-
T ss_pred CCCCcCCCCCCCceecHHHHHHHHHHHHHHcCCCeeccccccCCC---CCCCCCCCCCCCCcCChHHcCHHHhhhccccc
Confidence 699999984 6999997667899999999999999999999996 45677999999999999999999999999988
Q ss_pred cc----cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhCCCCCchhhHhHHHHHHHhhcCCCCCC
Q 007886 172 KA----ELPQPIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWY 247 (586)
Q Consensus 172 ~~----~l~~~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~~~~W~ 247 (586)
.. +++.....+.|||++|+++|+++|+++|++|.... .++.+|++||++ ++.||++||+||+|++++++.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~VDY~~v~~~K~~~L~~af~~f~~~~-~~~~~f~~F~~~--~~~wL~~yA~f~al~~~~~~~~w~ 154 (496)
T PF02446_consen 78 EAEEIEELAELRDADRVDYEAVAALKRRALRKAFERFKEQA-ERREEFEAFCEQ--NGEWLEDYALFCALKEKFGGAPWR 154 (496)
T ss_dssp ----GGGS-S---SSB--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCTTSSGG
T ss_pred hhhhhhhcccccccccccHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHH--hcchhHhHHHHHHHHHHhCCCCcc
Confidence 44 34444568999999999999999999999998763 567899999987 479999999999999999999999
Q ss_pred CCc-hhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhcccccccccc
Q 007886 248 LWP-ESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNR 326 (586)
Q Consensus 248 ~Wp-~~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~ 326 (586)
+|| +++++++++++++++++++++|+||+|+||+|++||+++|+||+++||+|||||||||++||||||++|++|+++
T Consensus 155 ~WP~~~~~~~~~~~l~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~- 233 (496)
T PF02446_consen 155 EWPEEELRDRDSEALAAFREEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLD- 233 (496)
T ss_dssp GS--HHHHTT-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B--
T ss_pred cCCHHHHhhhcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCc-
Confidence 998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCCCCCCCCCce
Q 007886 327 RGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRW 406 (586)
Q Consensus 327 ~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~y 406 (586)
+++|||||+||++|||||+|+|||++|+++||+||++|||++|++||++||||||||+||||||.++.+|.+|+|
T Consensus 234 -----~~aGaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl~~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~ 308 (496)
T PF02446_consen 234 -----ASAGAPPDYFSPTGQNWGNPPYNWDALKEDGYRWWIDRLRANMRLFDALRIDHFRGFFRYWWIPAGGETAIDGAW 308 (496)
T ss_dssp -----EEEEE-SSSSSSS-EEEEEE-B-HHHHHHTTTHHHHHHHHHHHCC-SEEEEETGGGGTEEEEEETT-SSSTT-EE
T ss_pred -----CeeCCCCCCCCcccccCCCCCcCHHHHHHcCCHHHHHHHHHHHHhCCchHHHHHHHHHheeEecCCCCCCCCcee
Confidence 799999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred eeCCchhHHHHHHHHcC-CCcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeecCCCCCCCCCCCCCCCcEEecCCCchh
Q 007886 407 KVGPGKSLFDAIFRSVG-NINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDND 485 (586)
Q Consensus 407 v~~p~~~l~~ale~~~~-~~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~~~~~~p~~~~~~sva~~~THD~~ 485 (586)
|+||+++||++|..+.+ +|+|||||||+||++|+++|+++||+||||++|+++.++++++.|++|+++|||||||||||
T Consensus 309 ~~~p~~~ll~~l~~e~~r~~~vigEDLG~vp~~v~~~l~~~gi~g~~Vl~f~~~~~~~~~~~P~~~~~~sva~~~THD~~ 388 (496)
T PF02446_consen 309 VRYPGEDLLAILALESGRDCLVIGEDLGTVPPEVRELLAELGIPGMRVLQFEFDEDDGNFYLPHNYPENSVAYTGTHDNP 388 (496)
T ss_dssp EE--HHHHHHHHHHHHS-S-EEEE--TSS--HHHHHHHHHTT--EEEEGGGSSSSSTT-TTSGGGSTSSEEEESS-TTS-
T ss_pred ecchHHHHHHHHHHHcCCCCcEEEeecCCCcHHHHHHHHHcCCCceEEEEecCCCCCCCCCCcccCCCccEeeCCCCCCH
Confidence 99999999999998888 99999999999999999999999999999999999665568999999999999999999999
Q ss_pred hHHHHHhCCCHHHHHHHHHHhcc-----cCCChhHHHHHHHHHhccccccccchhhhhccCCC-------CCCCCCCCCC
Q 007886 486 TIRSWWDTSKNEEKSNVMKYLSI-----SEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVS-------ARMNIPATQF 553 (586)
Q Consensus 486 Tl~Gww~~~d~~~r~~l~~~L~~-----~~~~~~~~~li~~al~s~a~~~i~~lqDlL~lg~~-------~r~N~PGT~~ 553 (586)
|++|||++.+.++|+.+.+||+. ....++++.+|+.++.|+|+++|+||||+|+++++ +|||+|||++
T Consensus 389 Tl~gww~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~s~~~i~~~qDlL~l~~e~~~~~~~~r~N~PGt~~ 468 (496)
T PF02446_consen 389 TLRGWWEGEDEEERRYLARYLGRLSAPETDEDEIAEALIRQALSSPSRLAIIPLQDLLGLGDELDLLPEEERINIPGTVD 468 (496)
T ss_dssp -HHHHHHCS-HHHHHHHHHHHCHTT-SSSSGGGHHHHHHHHHHHSS-SEEEEEHHHHTT--GG-------G-S--TT-SS
T ss_pred HHHHHHhCCCHHHHHHHHHHhcCccccCCCCcchhHHHHHHHHHhHHHHHHHHHHHHHcCChhhccccCCCCCcCCCCCC
Confidence 99999999999999999999982 34577899999999999999999999999999998 9999999999
Q ss_pred CCcccccCCCCChhhHHHHHHHHHHHHHHh
Q 007886 554 GNWSWRIPSSTSFDRLETEATKLRDLLSTY 583 (586)
Q Consensus 554 ~NW~wRlp~~~~~~~l~~~~~~l~~l~~~~ 583 (586)
+||+|||+.+. +++.+..+.++.|.+.|
T Consensus 469 ~NW~~Rl~~~l--~~~~~~~~~~~~l~~i~ 496 (496)
T PF02446_consen 469 ENWRWRLPESL--EELFEDAEFIALLTEIY 496 (496)
T ss_dssp STS-B---TTG--CSGHHHHHHHHHHHHH-
T ss_pred CcCCeeCCCCH--HHhHhhHHHHHhhcccC
Confidence 99999999873 55666667777777665
No 6
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=100.00 E-value=5.6e-133 Score=1190.91 Aligned_cols=489 Identities=21% Similarity=0.334 Sum_probs=438.3
Q ss_pred cCCCCCCCccccccC-------------CCC-------C-CCceeEEEEecCccCC--CCCCccchHHHHHHHHHHHHcC
Q 007886 67 VGQDLPDDYEEWTPK-------------PDP-------R-DRRRAGVLLHPTSFRG--PYGIGDFGAEAFRFIDWLHQAG 123 (586)
Q Consensus 67 ~p~~lP~gyh~~~~~-------------~~~-------~-~~R~~Gvl~~l~SLrs--~~GIGDfgdla~~~~d~~a~~G 123 (586)
||.+||+|||+|..+ |.. . .+|.|||++||||||| +||||||||+ ++|+||++++|
T Consensus 129 Lp~~Lp~GYH~L~l~~~~~~~~~~LivaP~r~~~~~~l~~~~r~wG~~~qLYsLRS~~~~GIGDfgdL-~~~~d~la~~G 207 (1693)
T PRK14507 129 LAIPLTPGYHRLTVTVGDLRAEAWVIAAPQRCWRPPALAEGARDWGLAAQLYGLRSARNWGIGDFGDL-GRLVRDAALRG 207 (1693)
T ss_pred cCCCCCCeeEEEEEecCCCceEEEEEEeCcccCChhhhccCCcceEEEeeeeeeeeCCCCCcccHHHH-HHHHHHHHHcC
Confidence 889999999999442 222 1 4678999999999995 8999999995 69999999999
Q ss_pred CCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhhhccCCCccc-------C----CCCCCCCCCCHHHHHHH
Q 007886 124 CSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVKDGLLAKAE-------L----PQPIDAERVNFAAVADL 192 (586)
Q Consensus 124 ~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~e~~~l~~~~-------l----~~~~~~~~vDy~~v~~~ 192 (586)
++||||||||+++|..|.++|||+|+||||+||+||+++.|++.+.+++.+ + ......+.|||++|+++
T Consensus 208 a~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alNPlYIdle~l~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~VDY~~V~~~ 287 (1693)
T PRK14507 208 ASFLGLSPLHALFPTDPAKASPYSPSSRLFLNTLYIDVEAVPDFAECEAARLLVHAPEFQARLEALRAAELVDYAGVAEA 287 (1693)
T ss_pred CCEEEEcCCCCCCCCCCCCCCCcCcccccccChHhcCHhhccccccchhhhhhhcchhhhHHHhhccCCCcccHHHHHHH
Confidence 999999999999888889999999999999999999999998877655321 1 11234678999999999
Q ss_pred HHHHHHHHHHHHHhcc----hhhHHHHHHHhhCCCCCchhhHhHHHHHHHhhcCCC-----CCCCCchhhhcCCHHHHHH
Q 007886 193 KDPLIAKAAERLIQSD----GELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTF-----SWYLWPESLKNRHLAALEE 263 (586)
Q Consensus 193 K~~~L~~a~~~~~~~~----~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~~~-----~W~~Wp~~~~~~~~~av~~ 263 (586)
|+++|+++|.+|.... ..++.+|++||++ ++.||++||+||||++++++. +|++||+++++++++++++
T Consensus 288 K~~~Lr~af~~f~~~~~~~~~~~~~~F~~F~~~--~g~wL~dyAlF~AL~e~~~~~~~~~w~W~~WPe~~r~~~~~av~~ 365 (1693)
T PRK14507 288 KFEVLEALWRHFRARHLERNTGRDAGFRAFRAE--GGESLRSHALFEALQEHFRAEDAHWWGWPDWPEAYRDPGTPAVRA 365 (1693)
T ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHHHh--cchHHHHHHHHHHHHHHhcCCCCCCCCccCCChhhccCCHHHHHH
Confidence 9999999999986431 3456789999998 469999999999999999765 7999999999999999999
Q ss_pred HHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCC
Q 007886 264 IYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKG--ISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAF 341 (586)
Q Consensus 264 ~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~G--I~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~F 341 (586)
++++|+++|+||+|+||+|++||+++|+||+++| |+|||||||||+++|||||++|++|+++ +++|||||+|
T Consensus 366 ~~~~~~~~v~F~~flQwla~~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~------~~aGAPPD~F 439 (1693)
T PRK14507 366 FAEEHAERVEYHEYLQWLADLQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANG------ASIGAPPDEL 439 (1693)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcC------CccCCCCCcC
Confidence 9999999999999999999999999999999999 7999999999999999999999999998 5999999999
Q ss_pred CccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHHHH--HH
Q 007886 342 SETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDA--IF 419 (586)
Q Consensus 342 s~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~a--le 419 (586)
|++|||||+|+|||++|+++||+||++|||++|++||+|||||||||+||||||.|+ +|.+|+||+||+++||.+ ||
T Consensus 440 s~~GQ~WG~P~y~p~~L~~~gY~ww~~rlr~~m~~~g~lRIDH~lGl~RlW~IP~g~-ta~~G~yv~yP~~~ll~~laLE 518 (1693)
T PRK14507 440 NPKGQDWGLPPFDPLELERDGYAPFRALLRANMRHAGALRIDHVMQLMRLFWIPLGR-SAREGAYVAYPFEPMLAVLALE 518 (1693)
T ss_pred ccccccCCCcCcCHHHHHhcChHHHHHHHHHHHHHCCEEEeccHHhhhHhcccCCCC-CCCCCeEEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 699999999999999974 58
Q ss_pred HHcCCCcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeecCCCCCCCCCCCCCCCcEEecCCCchhhHHHHHhCCCHHHH
Q 007886 420 RSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDTIRSWWDTSKNEEK 499 (586)
Q Consensus 420 ~~~~~~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~~~~~~p~~~~~~sva~~~THD~~Tl~Gww~~~d~~~r 499 (586)
+++++|+|||||||+||++|+++|+++||+||+|||||+++++ ++++|++|+++||+|||||||||++|||++.|.+.|
T Consensus 519 s~r~~~~VIgEDLGtVp~~Vr~~l~~~gi~Gm~VL~Fe~~~~~-~~~~P~~y~~~sva~tgTHD~pTl~Gww~g~d~~lR 597 (1693)
T PRK14507 519 SHRNRCLVIGEDLGTVPEGFRDALARAGVLSYRILYFEREDGG-AFKPPAAYPADALAAVTTHDLPTLVGWWRGVDTDLR 597 (1693)
T ss_pred HhcCCCeEEEecCCCCCHHHHHHHHHcCCCCceEEEeeecCCC-CCCCcccCcCCeEEECCCCCCHhHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999999999998764 689999999999999999999999999999998776
Q ss_pred HHH-----------------------HHHhcccC----------------CChhHHHHHHHHHhccccccccchhhhhcc
Q 007886 500 SNV-----------------------MKYLSISE----------------EDDISWKLIQAALSSVAQTAVIPLQDILRL 540 (586)
Q Consensus 500 ~~l-----------------------~~~L~~~~----------------~~~~~~~li~~al~s~a~~~i~~lqDlL~l 540 (586)
+.+ +..|.... .+++.+.+++.+..|+|.++++||||+||+
T Consensus 598 ~~Lgl~~~~~~~~~~~~~R~~~r~~ll~~L~~~g~l~~~~~~~~~~~~~~~~~l~~al~r~la~s~S~L~~v~leDllg~ 677 (1693)
T PRK14507 598 QSLGLYPDAERAEAQRTERVAERRRLLEALAAEGLLPSGEPPDAAPFPELTAELAEAVARYLARAPSALTAVQLEDVLGE 677 (1693)
T ss_pred HHhcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccHHHHHHHHHHHhhCCcchhhcCHHHHhCC
Confidence 543 22242210 124567788888899999999999999987
Q ss_pred CCCCCCCCCCCCCC--CcccccCCCCChhhHH
Q 007886 541 GVSARMNIPATQFG--NWSWRIPSSTSFDRLE 570 (586)
Q Consensus 541 g~~~r~N~PGT~~~--NW~wRlp~~~~~~~l~ 570 (586)
. +|+|+|||+++ ||+|||+.+. +++.
T Consensus 678 ~--~~~N~PGT~~eyPNWrrrL~~~l--e~l~ 705 (1693)
T PRK14507 678 L--EQANVPGTTEGYPNWRRKLDRNL--EAIA 705 (1693)
T ss_pred C--CCCCCCCCCCCCCCcCccCCCCH--HHHh
Confidence 5 59999999985 9999999873 5554
No 7
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.8e-130 Score=1165.28 Aligned_cols=476 Identities=35% Similarity=0.591 Sum_probs=435.0
Q ss_pred CCceeEEEEecCccCC--CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchh
Q 007886 86 DRRRAGVLLHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEE 163 (586)
Q Consensus 86 ~~R~~Gvl~~l~SLrs--~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~ 163 (586)
.+|.|||++||||||| +||||||+|+ ++||||++++|++||||||||++++..|...|||+|+||||+||||||++.
T Consensus 721 ~~r~~Gv~~~l~sLrs~~~~GiGDf~dl-~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~ 799 (1221)
T PRK14510 721 MGRACGILMHLYSLRSQRPWGIGDFEEL-YALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDL 799 (1221)
T ss_pred CCcceEEEEccccCCCCCCCCccCHHHH-HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhh
Confidence 3689999999999999 9999999886 699999999999999999999999888888999999999999999999999
Q ss_pred hhhccCCCcccCC---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcch-----hhHHHHHHHhhCCCCCchhh
Q 007886 164 LVKDGLLAKAELP---------QPIDAERVNFAAVADLKDPLIAKAAERLIQSDG-----ELKSQLENFHKDPSISSWLE 229 (586)
Q Consensus 164 l~e~~~l~~~~l~---------~~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~~~-----~~~~~f~~F~~~~g~~~wL~ 229 (586)
|++++++++.+.. .....+.|||++|+++|+++|+++|++|..... .++.+|++||++ ++.||+
T Consensus 800 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~vDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~~~~f~~F~~~--~g~wL~ 877 (1221)
T PRK14510 800 LPEAGLLTENEAALGSAGPELAKLSALGSVDYAWVEALKEKLLRAAYEAFRDKLPRYPLDLSSPEFDRFIEE--GGDWLR 877 (1221)
T ss_pred ccccccCcHHHhhhhhhhhhhhhcCCCCcccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHh--CchHHH
Confidence 9999988764321 113467899999999999999999999865322 245789999998 469999
Q ss_pred HhHHHHHHHhhcCCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeE--Eeecccc
Q 007886 230 DAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISI--MGDMPIY 307 (586)
Q Consensus 230 ~yA~f~aL~~~~~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~GI~L--~gDLpig 307 (586)
+||+||||++++++.+|++||+++++++++++++++++|+++|+||+|+||+|++||+++|+||+++||.| |||||||
T Consensus 878 ~yA~F~aL~~~~~~~~W~~Wp~~~~~~~~~~~~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~Gm~iGl~gDLpvg 957 (1221)
T PRK14510 878 RYAIFKALKAKFPGKGWHQWPEEYRLRKPPALEAFAEKYAEEVNYAKFLQYIADRQWQAAKDYAQEQGLSIGFYGDLAIG 957 (1221)
T ss_pred HHHHHHHHHHHhCCCCccCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEeEEeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866 9999999
Q ss_pred ccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeeccccc
Q 007886 308 VGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRG 387 (586)
Q Consensus 308 V~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~G 387 (586)
|+++|||||++|++|+++ .++|||||+||++|||||+|+|||++|+++||+||++|||++|++||+||||||||
T Consensus 958 v~~dsadvWa~~~~f~l~------~~~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~~w~~rlr~~~~~~~~lRIDH~~G 1031 (1221)
T PRK14510 958 VAPDGADAWAERSCFALD------VSIGAPPDYFNPEGQNWGLPPYDPRALRRDGYRWFIERIRANMRHAGALRIDHVRG 1031 (1221)
T ss_pred eCCCcHHHhcCHHHhcCC------CccCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEeccHHh
Confidence 999999999999999998 59999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEeCCCCCCCCCceeeCCchhHHHH--HHHHcCCCcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeecCCCCCC
Q 007886 388 FAGFWAVPSEAKVAMDGRWKVGPGKSLFDA--IFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNP 465 (586)
Q Consensus 388 f~r~W~IP~g~~ta~~G~yv~~p~~~l~~a--le~~~~~~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~~~~ 465 (586)
|+|||||| +.+||.+|+||+||+++||.+ +|+.|++|+|||||||+||++|+++|+++||+||||||||++++ +++
T Consensus 1032 ~~r~W~IP-~~~~a~~G~~v~~P~~~l~~~l~~e~~r~~~~vIgEDLG~vp~~v~~~l~~~gi~g~~Vl~Fe~~~~-~~~ 1109 (1221)
T PRK14510 1032 LERLFEVP-QGASAKEGAYLKGPGEELFGQVALESQRAQCPVIGEDLGTIPSGVRELLAILGILSYRVLQFERLGE-GNF 1109 (1221)
T ss_pred hHHheeCC-CCCCCCCCeEEECCHHHHHHHHHHHhCccCCcEEEeeCCcCCHHHHHHHHHcCCCccEEEEeCccCC-CCC
Confidence 99999999 667799999999999999975 45666699999999999999999999999999999999999865 468
Q ss_pred CCCCCCCCCcEEecCCCchhhHHHHHhCCCHHHHHHHHHHhcccCCChhHHHHHHHHHhccccccccchhhhhccCCCCC
Q 007886 466 HLPHNHERNQVVYTGTHDNDTIRSWWDTSKNEEKSNVMKYLSISEEDDISWKLIQAALSSVAQTAVIPLQDILRLGVSAR 545 (586)
Q Consensus 466 ~~p~~~~~~sva~~~THD~~Tl~Gww~~~d~~~r~~l~~~L~~~~~~~~~~~li~~al~s~a~~~i~~lqDlL~lg~~~r 545 (586)
++|++|+++||||||||||||++|||++.|.++|+.+. +++++++.+++|+|+++|+||||+|+ +++|
T Consensus 1110 ~~p~~~~~~~va~t~THD~~Tl~Gww~~~d~~~r~~l~----------~~~~~~~~~~~s~s~l~i~plqD~lg--~~~r 1177 (1221)
T PRK14510 1110 LPPPLYNALAAAYVGTHDLPTLAGWWEGVDLSEKEQLG----------AAEAVIEMLARSPAILVIIQLQDLLG--SNVR 1177 (1221)
T ss_pred CChhhCCCCcEEECCCCCCHHHHHHHHCCCHHHHHHhh----------HHHHHHHHHHhCCchheeecHHHhhC--CccC
Confidence 99999999999999999999999999999999886554 68899999999999999999999987 6899
Q ss_pred CCCCCCCCCCcccc--cCCCCChhhHH---HHHHHHHHHHHHhCCC
Q 007886 546 MNIPATQFGNWSWR--IPSSTSFDRLE---TEATKLRDLLSTYGRL 586 (586)
Q Consensus 546 ~N~PGT~~~NW~wR--lp~~~~~~~l~---~~~~~l~~l~~~~~R~ 586 (586)
||+|||+++||+|| ||.+. +++. +..++|++|++.++|+
T Consensus 1178 ~N~PGT~~~~~nWR~rl~~~l--~~~~~~~~~~~~l~~l~~~~~r~ 1221 (1221)
T PRK14510 1178 MNLPGTIRENPNWRRKLSAPV--ERLTLTQRACARLRGLAEKRGRL 1221 (1221)
T ss_pred ccCCCCCCCCCCcccccccCh--hhhccCHHHHHHHHHHHHHhCCC
Confidence 99999998765555 55543 4332 3578999999999995
No 8
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-129 Score=1053.32 Aligned_cols=486 Identities=37% Similarity=0.673 Sum_probs=432.4
Q ss_pred CCceeEEEEecCccCCCCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhh
Q 007886 86 DRRRAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (586)
Q Consensus 86 ~~R~~Gvl~~l~SLrs~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~ 165 (586)
++|+.||.++..|++++||||||||+++.|+++++++|++||||||||++++.. ..+|||+|+||+|+||+|||++.|+
T Consensus 12 ~~~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~-~~~SPYs~~S~~a~N~~~Id~~~l~ 90 (520)
T COG1640 12 MKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAY-EEDSPYSPSSRRALNPLYIDVEALP 90 (520)
T ss_pred ccccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccc-cCCCCCCchhhhccCceeecHHHhh
Confidence 344555555555556799999999999999999999999999999999999766 8899999999999999999999999
Q ss_pred hc-cCCCcccC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhCCCCCchhhHhHHHHHHHhhc
Q 007886 166 KD-GLLAKAEL---PQPIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSL 241 (586)
Q Consensus 166 e~-~~l~~~~l---~~~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~ 241 (586)
|. +++.++++ +...+.+.|||+.|+..|+++|+++|.+|..+. .+.++|++||+++ +.||.+||+||||++++
T Consensus 91 e~~~~~~~~~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~-~~~~~f~~F~~~~--~~wL~d~A~F~Al~e~~ 167 (520)
T COG1640 91 EFQDFLLDKDLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRK-EREKDFAAFCQEE--GYWLDDYALFMALKEHF 167 (520)
T ss_pred hhhhhccHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhc--cchhHHHHHHHHHHHHh
Confidence 98 76665543 344568899999999999999999999998764 6678999999884 69999999999999999
Q ss_pred CCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccc
Q 007886 242 NTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKH 321 (586)
Q Consensus 242 ~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~ 321 (586)
++.+|+.||+++++++.++++++.+.|+++|+||+||||+|++||+++|+||+++||+|||||||||+.+|||||++|++
T Consensus 168 ~~~~W~~Wp~~~~~~~~~~~~~~~~~~~eei~f~~~lQ~~~~~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~ 247 (520)
T COG1640 168 HAAGWQVWPDSYRRRDLSAVSAFIELHAEEVDFHRFLQWLFFRQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEY 247 (520)
T ss_pred cccccCCCChhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEeecccceecCCchhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCCCCCC
Q 007886 322 FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVA 401 (586)
Q Consensus 322 F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta 401 (586)
|+++ .+||||||+||++|||||+|+|||++|+++||+||++|||.+|+++|+|||||||||+|+|+||.|++++
T Consensus 248 f~~~------~~~GaPPD~f~~~GQ~Wg~p~yn~~~l~~~~y~wwierlr~~~~~~~~lRIDHf~Gl~rlW~ip~g~~~a 321 (520)
T COG1640 248 FCLD------ESAGAPPDVFNAQGQDWGLPPYNPEALKKDGYDWWIERLRANLKLYGILRIDHFRGLFRLWEIPYGEDTA 321 (520)
T ss_pred cccc------ccCCCCCCcccccccccCCCCCCHHHHHHcccHHHHHHHHHHHHhcCeeeeeeecchhhheeeeCCCccc
Confidence 9999 4799999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CCCceeeCCchhHHH-HHHHHcCCCcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeec-CCCCCCCCCCCCCC-CcEEe
Q 007886 402 MDGRWKVGPGKSLFD-AIFRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFG-SDSKNPHLPHNHER-NQVVY 478 (586)
Q Consensus 402 ~~G~yv~~p~~~l~~-ale~~~~~~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~-~~~~~~~~p~~~~~-~sva~ 478 (586)
..|.|++.|++.|+. ++++.+++|+||||||||||++|+++|+++||+||||++||.+ .++. .++|+++++ +||+|
T Consensus 322 ~g~~~~~~~~~~l~~l~le~~~~~~~vIgEDLGtvp~eV~~~l~~~gi~g~kIl~Fe~~~~~~~-~~~P~~~~~~nsva~ 400 (520)
T COG1640 322 QGGYWRYPPGKLLFILALEALRANMLVIGEDLGTVPAEVRDLLAHLGIPGMKILRFEADNEDPS-PFLPPNYYPPNSVAT 400 (520)
T ss_pred cCCcccCCHHHHHHHHHHHhhhcCCcEEecccCCCCHHHHHHHHHcCCCceEEEeecccCCcCC-CCCChhhcccceeEE
Confidence 555555555555554 7788888999999999999999999999999999999999744 3333 678888765 99999
Q ss_pred cCCCchhhHHHHHhCCCHHHHHHHHHHhccc-------CCChhHHHHHHHH---HhccccccccchhhhhccCCCCCCCC
Q 007886 479 TGTHDNDTIRSWWDTSKNEEKSNVMKYLSIS-------EEDDISWKLIQAA---LSSVAQTAVIPLQDILRLGVSARMNI 548 (586)
Q Consensus 479 ~~THD~~Tl~Gww~~~d~~~r~~l~~~L~~~-------~~~~~~~~li~~a---l~s~a~~~i~~lqDlL~lg~~~r~N~ 548 (586)
||||||||++|||++.+++.|+++..+|... ..+.+++..++.+ +.+.+..+|+++||++++|+++|||+
T Consensus 401 tsTHD~ptl~gww~~~~~~~~~~~~~~l~~~~~~~~~~~~e~l~~~~~~~~~~~~~s~s~~~l~~~ql~~~lg~~~~~N~ 480 (520)
T COG1640 401 TSTHDLPTLRGWWEELDEELRRRLGLLLPEAYDDRLAAIAELLVWLHLRSALMRYLSVSDSALLSLQLEDELGSEERMNI 480 (520)
T ss_pred eccCCChhHHHHHhCCCHHHHHHHHHhhhhhhhhHHHhHHHHHHHHHHHhhHHHHhccCccceeccchhhccccccccCC
Confidence 9999999999999999999998887776432 1344667778878 78899999999999999999999999
Q ss_pred CCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHhCC
Q 007886 549 PATQFGNWSWRIPSSTSFDRLETEATKLRDLLSTYGR 585 (586)
Q Consensus 549 PGT~~~NW~wRlp~~~~~~~l~~~~~~l~~l~~~~~R 585 (586)
|||+.+||+|||..+.... ...++|+.+++.|+|
T Consensus 481 PgT~~~NW~~Rl~~~~~~~---~~~~~l~~~~~~~~r 514 (520)
T COG1640 481 PGTIYPNWRWRLHCSLETL---FLNEDLNELLKLYGR 514 (520)
T ss_pred CCCCCCCceeecCcchhhh---hhhHHHHHHHHHHHH
Confidence 9999999999998765322 235788888888876
No 9
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=3.4e-123 Score=1044.06 Aligned_cols=510 Identities=26% Similarity=0.463 Sum_probs=430.4
Q ss_pred ceeeecccCCCCCCCccccccCCCCCCCceeEEEEecCccCCC--CCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCC
Q 007886 60 AASAVASVGQDLPDDYEEWTPKPDPRDRRRAGVLLHPTSFRGP--YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGR 137 (586)
Q Consensus 60 ~~~~~~~~p~~lP~gyh~~~~~~~~~~~R~~Gvl~~l~SLrs~--~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~ 137 (586)
.|...+.........+....- ....|++||++|||||||. |||||||| +++|||||+++|+++|||||||+|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~---~~~~R~aGill~l~SLrS~~s~GIGDfgd-L~~fvD~~a~~G~~~~QiLPL~~t~~ 110 (745)
T PLN03236 35 LGDRAAATERRIIHRDGHFRH---GGAWKGSGMALPVFSLRSAESVGAGDFGD-LEALVDFAAEAGMSVVQLLPVNDTCV 110 (745)
T ss_pred cccccCCCCcchhhhhhhhcc---CcchhhheeeeccccCCCCCCCCcccHHH-HHHHHHHHHHcCCCEEEECCCCcCCC
Confidence 444444444333344433311 1247999999999999986 99999999 57999999999999999999999975
Q ss_pred CCCC-CCCCCCcccccccccccccchhhhhccC-----------CC--cccCCC---CCCCCCCCHHHHHHHHHHHHHHH
Q 007886 138 KANE-EGSPYSGQDANCGNTLLISLEELVKDGL-----------LA--KAELPQ---PIDAERVNFAAVADLKDPLIAKA 200 (586)
Q Consensus 138 ~~~~-~~SPY~p~Sr~alNPlyI~le~l~e~~~-----------l~--~~~l~~---~~~~~~vDy~~v~~~K~~~L~~a 200 (586)
..+. +.|||+|+|+||+||+|||++.|++.++ +. .+++.. ..+.+.|||++|+++|+++|+++
T Consensus 111 ~~~~~dSSPYsp~S~fAlNPlyIdle~L~e~~~~~~~~~~~~~~l~~~~~el~~~~~~~~~~~VDY~~V~~~K~~~Lr~a 190 (745)
T PLN03236 111 HGTFWDSYPYSSLSVHALHPLYLKLKELVEEAANAAAAGPDAGRLAALAAEIDAAKHALDLKEIDYEATMKEKLMFAKRA 190 (745)
T ss_pred CCCCCCCCCcCcccccccChHHcCHHHhhhhhhhcccccchhhhhhhhHHHHHHhhhccCccceeHHHHHHHHHHHHHHH
Confidence 4333 4479999999999999999999998764 22 122211 22357899999999999999999
Q ss_pred HHHHHhcchhhHHHHHHHhhCCCCCchhhHhHHHHHHHhhcCCCCCCCCchhhhcCCHHHHHHHH---HhcHhHHHHHHH
Q 007886 201 AERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIY---QSKKDFIDLFIA 277 (586)
Q Consensus 201 ~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~aL~~~~~~~~W~~Wp~~~~~~~~~av~~~~---~~~~~~i~f~~~ 277 (586)
|.+|... ..+..+|++||++ ++.||++||+||||++++++.+|++||+++++++++++++++ +++.++|+||+|
T Consensus 191 f~~f~~~-~~~~~~F~~F~~~--~~~WL~dYAlF~ALke~~~~~~w~~WP~~~~~~~~~al~~~~~~~~~~~~eI~f~~f 267 (745)
T PLN03236 191 FEADGAK-FLASDACERFVKA--NASWLKPYAVFCALRDLFGTAEHWRWGDLFATFAAAILAKIDCPGGDLYESTRFFFY 267 (745)
T ss_pred HHHhhhc-cchHHHHHHHHHh--CchHHHHHHHHHHHHHHhCCCCccCCChhhccCCHHHHHHHHhhhhhhhHHHHHHHH
Confidence 9998643 2234689999998 479999999999999999999999999999999999999998 788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHH
Q 007886 278 QQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKA 357 (586)
Q Consensus 278 lQw~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~ 357 (586)
+||+|++||+++++||+++||+|||||||||++||||||++|++|+++ .++|||||+||++|||||+|+|||++
T Consensus 268 lQ~~~~~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld------~~aGAPPD~FS~~GQnWG~P~YnW~~ 341 (745)
T PLN03236 268 LQYHLDRQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMD------TSTGAPPDAFDANGQNWGFPTYDWEE 341 (745)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCC------CCcCCCCCCCCcccCcCCCCCcCHHH
Confidence 999999999999999999999999999999999999999999999998 48999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCCCCCCCCCceeeC---------------------C------
Q 007886 358 MEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVG---------------------P------ 410 (586)
Q Consensus 358 l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~---------------------p------ 410 (586)
|+++||+||++||++++++||++||||||||+|||+||.+++||..|.|++. |
T Consensus 342 l~~dgY~WWr~Rlr~~~~~~dalRIDH~~Gf~R~W~IP~~~~ta~~G~w~ps~p~s~~el~~~Gl~~~~r~~~P~i~~~~ 421 (745)
T PLN03236 342 MAEDDYAWWRARMQHLEQFFSAIRIDHILGFFRIWELPAHAKTGRLGRFRPSLPIRKDELAARGLWDLDRLCEPWIQSEE 421 (745)
T ss_pred HHhcCcHHHHHHHHHHHHhCCeEEeechhhhceeeeecCCCccccCceeeecCCCCHHHHHhcCCcchhhhccccccHHH
Confidence 9999999999999999999999999999999999999999999999999765 0
Q ss_pred --------------------c-------------------------------------------------hhHHHHH---
Q 007886 411 --------------------G-------------------------------------------------KSLFDAI--- 418 (586)
Q Consensus 411 --------------------~-------------------------------------------------~~l~~al--- 418 (586)
+ +.|+..+
T Consensus 422 l~~~fg~~~~~v~~~~l~~~~~~~~~~~~~~~~y~~k~e~~te~~i~~~~~~~~~~~~~~~~~~~~~~~~~gL~~l~~nv 501 (745)
T PLN03236 422 LEALFGDNDGEAAGRFFEETDAETKPDGTTRGLWKFRKEFDTEQAIFASEALKPRDDFPDHLNDEQEELRAGLMQLFQNR 501 (745)
T ss_pred HHHHhcccHHHHHHHHHHhhccccccccccCCeeeechhhhhHHHHHhhhccccccccchhhhhhHHHHHHHHHHHhcCe
Confidence 0 0000000
Q ss_pred -------------------------------------------------------------HHHcCCCcEEEcccCCCCH
Q 007886 419 -------------------------------------------------------------FRSVGNINIIAEDLGVITE 437 (586)
Q Consensus 419 -------------------------------------------------------------e~~~~~~~vIgEDLG~vp~ 437 (586)
.....++.|||||||+||+
T Consensus 502 ~~i~d~~~~~~f~Pr~~~~~t~s~~~L~~~~k~~~~~L~~dy~~~r~~~~W~~~a~k~L~~l~~~t~mlvcgEDLG~vP~ 581 (745)
T PLN03236 502 CLLRDPDDADAFYPRFEFEETTSFQALDDWARDALRDLSDDYFFARQDATWRENARKTLPALLKCTEMLVCGEDLGFTPM 581 (745)
T ss_pred eeeecCCCCcCccccccccccchhhhcCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCeEEehhhcCCCch
Confidence 0112347789999999999
Q ss_pred HHHHHHHHhCCCCeEEEEeeecCCCCCCCCCCCCCCCcEEecCCCchhhHHHHHhCCCHHHHHHHHHHhccc----CCCh
Q 007886 438 DVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDTIRSWWDTSKNEEKSNVMKYLSIS----EEDD 513 (586)
Q Consensus 438 ~V~~~l~~~gi~G~~Vl~Fe~~~~~~~~~~p~~~~~~sva~~~THD~~Tl~Gww~~~d~~~r~~l~~~L~~~----~~~~ 513 (586)
+|+++|+++||+|++|.+|+++.....|..|++|+++|||++||||++||+|||++. .+.++.+....+.. -..+
T Consensus 582 ~V~~vm~eL~Il~LrIqRmpk~~~~~~F~~~~~ypy~SV~t~StHD~stLR~WWee~-~~~~~~~~~~~~~g~p~~~~~~ 660 (745)
T PLN03236 582 CVPPVLDELGILGLRIQRMPHDGESGEFGRPERYPYETVCSPSCHDTMTTRAWWEAD-AARRARYAELFQAGNDDACEPH 660 (745)
T ss_pred hHHHHHHHcCCCceEEeecCCCCCCCcCCChhhCCCceeEeCCCCCCHHHHHHHhhC-HHHHHHHHHhcCCCCCCCCCHH
Confidence 999999999999999999998752246889999999999999999999999999984 34444443333211 1347
Q ss_pred hHHHHHHHHHhccccccccchhhhhccCC--------CCCCCCCCCCCCCcccccCCCCChhhHH---HHHHHHHHHHHH
Q 007886 514 ISWKLIQAALSSVAQTAVIPLQDILRLGV--------SARMNIPATQFGNWSWRIPSSTSFDRLE---TEATKLRDLLST 582 (586)
Q Consensus 514 ~~~~li~~al~s~a~~~i~~lqDlL~lg~--------~~r~N~PGT~~~NW~wRlp~~~~~~~l~---~~~~~l~~l~~~ 582 (586)
+++.+|+..+.|+|++||+||||+|++.+ ++|||+|.+..+||+|||+.+. ++|. +..++|++|+..
T Consensus 661 ~~~~Il~~~l~s~Sml~I~~~QD~lal~~~l~~~~~~~erIN~P~~~~h~WryR~~~~l--E~L~~~~~~~~~i~~li~~ 738 (745)
T PLN03236 661 VMRAILRQHIASPSSIAIFPAQDLLALDEEYAKRPAEEETINDPTNPKHYWRFRIHVAC--EDLLANAAFLGEIKDLVRE 738 (745)
T ss_pred HHHHHHHHHhcCchhhhhhhHHHHhccChhhccCCchHhheeCCCCCCcCceeccCCCH--HHHhhcHHHHHHHHHHHHH
Confidence 89999999999999999999999999975 4899999777899999999974 6664 347999999999
Q ss_pred hCC
Q 007886 583 YGR 585 (586)
Q Consensus 583 ~~R 585 (586)
.||
T Consensus 739 sgr 741 (745)
T PLN03236 739 GGQ 741 (745)
T ss_pred cCC
Confidence 998
No 10
>PLN02950 4-alpha-glucanotransferase
Probab=100.00 E-value=1.1e-116 Score=1018.21 Aligned_cols=471 Identities=25% Similarity=0.468 Sum_probs=410.1
Q ss_pred CCceeEEEEecCccCC--CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCC-CCCCCCcccccccccccccch
Q 007886 86 DRRRAGVLLHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANE-EGSPYSGQDANCGNTLLISLE 162 (586)
Q Consensus 86 ~~R~~Gvl~~l~SLrs--~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~-~~SPY~p~Sr~alNPlyI~le 162 (586)
..|+|||++|+||||| +||||||+|+ ++|||||+++|+++|||||||+|+..... +.|||+|+|+||+||+||||+
T Consensus 258 ~~R~~Gi~~~l~SLrS~~s~GIGDf~dl-~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~ 336 (909)
T PLN02950 258 PWRGAGVAVPVFSIRSEEDVGVGEFLDL-KLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQ 336 (909)
T ss_pred CccceEEEEecccCCCCCCCCeeCHHHH-HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHH
Confidence 3689999999999997 5899999996 69999999999999999999999753322 456999999999999999999
Q ss_pred hhhhccCCCc---ccCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhCCCCCchhhHhHHHHH
Q 007886 163 ELVKDGLLAK---AELP---QPIDAERVNFAAVADLKDPLIAKAAERLIQSDGELKSQLENFHKDPSISSWLEDAAYFAA 236 (586)
Q Consensus 163 ~l~e~~~l~~---~~l~---~~~~~~~vDy~~v~~~K~~~L~~a~~~~~~~~~~~~~~f~~F~~~~g~~~wL~~yA~f~a 236 (586)
.|++. ++. +++. ...+.+.|||++|+++|+++|+++|.+|... ..+..+|++||++ ++.||++||+|||
T Consensus 337 ~l~~~--l~~~~~~~~~~~~~~~~~~~VDY~~v~~~K~~~L~~~f~~f~~~-~~~~~~F~~F~~~--~~~WL~~yA~F~a 411 (909)
T PLN02950 337 ALSER--LPEDLKAEIQKARKQLDKKDVDYEATLATKLSIAKKVFDLEKDL-TLNSSSFKKFFSE--NEHWLKPYAAFCF 411 (909)
T ss_pred HHHhh--hhhhHHHHHHHhhhccCcccccHHHHHHHHHHHHHHHHHhhhhc-cccHHHHHHHHHh--CccHHHHHHHHHH
Confidence 99765 221 2222 1223578999999999999999999998543 2234789999998 5799999999999
Q ss_pred HHhhcCCCCCCCCch--hhhcCCHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEeeccccccCChhh
Q 007886 237 IDDSLNTFSWYLWPE--SLKNRHLAALEEIYQSKKDFIDLFIAQQFLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSAD 314 (586)
Q Consensus 237 L~~~~~~~~W~~Wp~--~~~~~~~~av~~~~~~~~~~i~f~~~lQw~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaD 314 (586)
|++++++.+|++||+ +++.++.+++..+++++.++|+||+|+||+|++||+++++||+++||+|||||||||++||||
T Consensus 412 L~~~~~~~~w~~Wp~~~~~~~~~~~~l~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaD 491 (909)
T PLN02950 412 LRDFFETSDHSQWGRFSDFSDEKLEKLVSPGSLHYDTICFHYYIQYHLHSQLSEAAEYARKKGVVLKGDLPIGVDRNSVD 491 (909)
T ss_pred HHHHhCCCCcccCcccccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeeceeCCCcHH
Confidence 999999999999999 678888888888899999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHHHHHHhhhcCceeeccccccceeeEE
Q 007886 315 VWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAV 394 (586)
Q Consensus 315 vWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~I 394 (586)
||++|++|+++ .++|||||+||++|||||+|+|||++|+++||+||++|||++|++||++||||||||||||||
T Consensus 492 vWa~p~lF~l~------~~aGaPPD~Fs~~GQ~WG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~I 565 (909)
T PLN02950 492 TWVYPNLFRMN------TSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWEL 565 (909)
T ss_pred HhcCHHHhcCC------CccCCCCCcCCcccccCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCEEEEecchhhcEeeEe
Confidence 99999999998 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCceeeCCc---------------------------------------------------------------
Q 007886 395 PSEAKVAMDGRWKVGPG--------------------------------------------------------------- 411 (586)
Q Consensus 395 P~g~~ta~~G~yv~~p~--------------------------------------------------------------- 411 (586)
|.+++||..|.|+++-.
T Consensus 566 P~~~~~a~~G~w~~~~~~s~~el~~~gl~~~~r~~~p~i~~~~l~~~fg~~~~~v~~~~~~~~~~~~y~~k~~~~te~~i 645 (909)
T PLN02950 566 PAHAVTGLVGKFRPSIPLSQEELEQEGIWDFDRLSRPYIRQEFLQEKFGDRWTEIASNFLNEYQKGCYEFKEDCNTEKKI 645 (909)
T ss_pred cCCCccccCceEecCCCCCHHHHHhcCCccHhhhccccccHHHHHHHhcccHHHHHHHHHHhcCCCcEEeccccchHHHH
Confidence 99999999999987200
Q ss_pred ---------------------hhHHHHH----------------------------------------------------
Q 007886 412 ---------------------KSLFDAI---------------------------------------------------- 418 (586)
Q Consensus 412 ---------------------~~l~~al---------------------------------------------------- 418 (586)
+.|+..+
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~~d~~~~~~f~pr~~~~~~~s~~~L~~~~~~~~~~l~~~~~~~r~~~ 725 (909)
T PLN02950 646 AAKLKRLAEKSWLLEEEEKIRRGLFDLLQNVVLIRDPEDPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQED 725 (909)
T ss_pred HHhhccccccchhhhhHHHHHHHHHHHhhceeEEecCCCCCCcccceecccccchhhcCHHHHHHHHHHHHHHHhhcCHH
Confidence 0000000
Q ss_pred ------------HHHcCCCcEEEcccCCCCHHHHHHHHHhCCCCeEEEEeeecCCCCCCCCCCCCCCCcEEecCCCchhh
Q 007886 419 ------------FRSVGNINIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDSKNPHLPHNHERNQVVYTGTHDNDT 486 (586)
Q Consensus 419 ------------e~~~~~~~vIgEDLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~~~~~~p~~~~~~sva~~~THD~~T 486 (586)
.....++.|||||||+||++|+.+|+++||+|++|.+++++.+ ..|..|.+|++.|||++||||++|
T Consensus 726 ~w~~~a~~~L~~l~~~t~ml~cgEDLG~vp~~v~~vm~~l~i~~l~iqr~~~~~~-~~f~~~~~y~y~sV~t~stHD~~t 804 (909)
T PLN02950 726 LWRENALKTLPALLNSSDMLACGEDLGLVPACVHPVMQELGLLGLRIQRMPSEPG-LEFGIPSQYSYMTVCAPSCHDCST 804 (909)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecccCcCccchHHHHHHhCCcceEEEeccCCCC-CCCCChhhCCcceeeecCCCCCHH
Confidence 0112357889999999999999999999999999999998743 357788999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHhcccC------CChhHHHHHHHHHhccccccccchhhhhccCC--------CCCCCCCCCC
Q 007886 487 IRSWWDTSKNEEKSNVMKYLSISE------EDDISWKLIQAALSSVAQTAVIPLQDILRLGV--------SARMNIPATQ 552 (586)
Q Consensus 487 l~Gww~~~d~~~r~~l~~~L~~~~------~~~~~~~li~~al~s~a~~~i~~lqDlL~lg~--------~~r~N~PGT~ 552 (586)
|++||++....+++++..+|+..+ ..++++.+|+..+.|+|++||+||||+|++++ ++|||+|.+.
T Consensus 805 lr~WWe~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~il~~~l~s~S~~~i~~~qD~la~~~~~~~~~~~~erIN~P~~~ 884 (909)
T PLN02950 805 LRAWWEEDEERRERFYKHVLGSDGPPPSQCVPDVAHFILQQHVEAPSMWAIFPLQDLLALKEEYTTRPANEETINDPTNP 884 (909)
T ss_pred HHHHHhhCHHHHHHHHHHHhCcCCCCCccCCHHHHHHHHHHhcCCCcceehhhHHHHHhCCHhhccCCcccceeeCCCCC
Confidence 999999866666666777776532 35788999999999999999999999999964 5799999777
Q ss_pred CCCcccccCCCCChhhHHH
Q 007886 553 FGNWSWRIPSSTSFDRLET 571 (586)
Q Consensus 553 ~~NW~wRlp~~~~~~~l~~ 571 (586)
.+||+|||+.+. |+|.+
T Consensus 885 ~h~W~yR~~~~l--e~l~~ 901 (909)
T PLN02950 885 KHYWRFRVHVTL--ESLLA 901 (909)
T ss_pred cccceeccCCCH--HHHhh
Confidence 789999999974 66643
No 11
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.19 E-value=0.0091 Score=68.96 Aligned_cols=134 Identities=21% Similarity=0.275 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 007886 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (586)
Q Consensus 286 l~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~w 365 (586)
++++.+.|+++||+||-|+.+ ++-|.|-|.. ..|. |.+...-.-|.+ ..-..||.+.+|+..-+-. +.
T Consensus 222 ~k~lv~~~H~~Gi~VilD~V~--nH~~~~~~~~-~~~~----~~~~~~~~~~~~---~~~~~w~~~~~n~~~~~vr--~~ 289 (633)
T PRK12313 222 FMYLVDALHQNGIGVILDWVP--GHFPKDDDGL-AYFD----GTPLYEYQDPRR---AENPDWGALNFDLGKNEVR--SF 289 (633)
T ss_pred HHHHHHHHHHCCCEEEEEECC--CCCCCCcccc-cccC----CCcceeecCCCC---CcCCCCCCcccCCCCHHHH--HH
Confidence 667778899999999999985 4444443321 1221 111111101111 1112688887776433222 23
Q ss_pred HHHHHHHHhh--hcCceeeccccccc-------eeeEEeCCCCCCCCCceeeCCchhHHH----HHHHHcCCCcEEEccc
Q 007886 366 WIHRIRRARD--LYDEFRIDHFRGFA-------GFWAVPSEAKVAMDGRWKVGPGKSLFD----AIFRSVGNINIIAEDL 432 (586)
Q Consensus 366 w~~rlr~~~~--~~g~lRIDH~~Gf~-------r~W~IP~g~~ta~~G~yv~~p~~~l~~----ale~~~~~~~vIgEDL 432 (586)
.++-++.-++ +.|++|+|.+-.+. .-| .|.. ..|. ......+++. .|.+..+++.+|||+.
T Consensus 290 l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~-~~~~----~~~~-~~~~~~~fl~~~~~~v~~~~p~~~liaE~~ 363 (633)
T PRK12313 290 LISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEW-TPNK----YGGR-ENLEAIYFLQKLNEVVYLEHPDVLMIAEES 363 (633)
T ss_pred HHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCc-CCcc----cCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5556666665 58999999664322 112 2321 1111 1122345553 4566778999999997
Q ss_pred CCCCH
Q 007886 433 GVITE 437 (586)
Q Consensus 433 G~vp~ 437 (586)
+.-|.
T Consensus 364 ~~~~~ 368 (633)
T PRK12313 364 TAWPK 368 (633)
T ss_pred CCCcc
Confidence 55443
No 12
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.67 E-value=0.02 Score=67.10 Aligned_cols=134 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCcccc----CCCCCCCChHHHHHh
Q 007886 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQ----LWGSPLYDWKAMEKD 361 (586)
Q Consensus 286 l~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ----~WG~P~y~w~~l~~~ 361 (586)
++++-+.|+++||++|-|+-.. +-|-+...--..| -|.++.+|....+ .||...+|-..-+
T Consensus 302 lk~LVd~aH~~GI~VilDvV~n--H~~~~~~~gl~~f-----------Dg~~~~Yf~~~~~g~~~~w~~~~~N~~~~e-- 366 (758)
T PLN02447 302 LKYLIDKAHSLGLRVLMDVVHS--HASKNTLDGLNGF-----------DGTDGSYFHSGPRGYHWLWDSRLFNYGNWE-- 366 (758)
T ss_pred HHHHHHHHHHCCCEEEEEeccc--ccccccccccccc-----------CCCCccccccCCCCCcCcCCCceecCCCHH--
Confidence 5666778999999999998752 2222211000111 1445556654332 3666555543221
Q ss_pred chHHHHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCC---ceeeC----CchhHH----HHHHHHcCCCcEE
Q 007886 362 GFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDG---RWKVG----PGKSLF----DAIFRSVGNINII 428 (586)
Q Consensus 362 gy~ww~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G---~yv~~----p~~~l~----~ale~~~~~~~vI 428 (586)
--+..++-++.-++ ++|++|+|.+--+.- .--..+ ..-.| .|.-+ ..-.+| ..|.+..+++..|
T Consensus 367 Vr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY-~~hg~~--~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~I 443 (758)
T PLN02447 367 VLRFLLSNLRWWLEEYKFDGFRFDGVTSMLY-HHHGLQ--MAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTI 443 (758)
T ss_pred HHHHHHHHHHHHHHHhCcccccccchhhhhc-cccCcc--cccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 11346666777666 689999997765421 100000 01111 12111 112233 2456677899999
Q ss_pred EcccCCCCH
Q 007886 429 AEDLGVITE 437 (586)
Q Consensus 429 gEDLG~vp~ 437 (586)
|||....|.
T Consensus 444 AEd~s~~p~ 452 (758)
T PLN02447 444 AEDVSGMPT 452 (758)
T ss_pred EEcCCCCCC
Confidence 999865554
No 13
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.63 E-value=0.047 Score=64.22 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCCccchHHHHHHHHHHHHcCCCeeeeccCCC
Q 007886 103 YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVP 134 (586)
Q Consensus 103 ~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~ 134 (586)
-++|+|..++.++++.+++.|.+.|+|+||..
T Consensus 259 ~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e 290 (726)
T PRK05402 259 GRFLSYRELADQLIPYVKEMGFTHVELLPIAE 290 (726)
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 45899999887888999999999999999965
No 14
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.59 E-value=0.051 Score=66.84 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 007886 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (586)
Q Consensus 286 l~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~w 365 (586)
++++.+.|+++||++|-|+.. ++-+.|.|... .|. |.+...- +|..-...++||...+|...-+ =-+.
T Consensus 817 fk~lVd~~H~~GI~VILD~V~--nH~~~d~~~l~-~fd----g~~~y~~---~d~~~g~~~~Wg~~~fn~~~~e--Vr~f 884 (1224)
T PRK14705 817 FRFLVDSLHQAGIGVLLDWVP--AHFPKDSWALA-QFD----GQPLYEH---ADPALGEHPDWGTLIFDFGRTE--VRNF 884 (1224)
T ss_pred HHHHHHHHHHCCCEEEEEecc--ccCCcchhhhh-hcC----CCccccc---CCcccCCCCCCCCceecCCCHH--HHHH
Confidence 556677799999999999986 55566766432 221 2211110 1111123578999888875432 2234
Q ss_pred HHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCCceee--------CCchhHHH----HHHHHcCCCcEEEcc
Q 007886 366 WIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKV--------GPGKSLFD----AIFRSVGNINIIAED 431 (586)
Q Consensus 366 w~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~--------~p~~~l~~----ale~~~~~~~vIgED 431 (586)
.++-++.-++ +.|++|+|-+-.+. |. +.. -..|.|++ ...-+++. .|.+..+++.+|||+
T Consensus 885 li~~a~~Wl~eyhiDGfR~Dav~~ml-y~----Dys-r~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEe 958 (1224)
T PRK14705 885 LVANALYWLDEFHIDGLRVDAVASML-YL----DYS-REEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEE 958 (1224)
T ss_pred HHHHHHHHHHHhCCCcEEEeehhhhh-hc----ccc-cccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 5555555554 67899999986652 10 000 11233332 11234553 455677899999999
Q ss_pred cCCCCH
Q 007886 432 LGVITE 437 (586)
Q Consensus 432 LG~vp~ 437 (586)
-..-|.
T Consensus 959 st~~p~ 964 (1224)
T PRK14705 959 STAFPG 964 (1224)
T ss_pred CCCCcC
Confidence 876554
No 15
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.64 E-value=0.069 Score=54.15 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhhHhc----------cccccccccCCCCceeecCCCCCCC--ccccCCC--
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA----------NKKHFLLNRRGFPLEVSGVPPDAFS--ETGQLWG-- 349 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa----------~~~~F~l~~~g~p~~~~GaPPD~Fs--~~GQ~WG-- 349 (586)
++++++.+.|+++||+||-|+.+- |......|. .++.|.... .-+.||-.+. ..+.+|.
T Consensus 52 ~d~~~Lv~~~h~~gi~VilD~V~N-H~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 124 (316)
T PF00128_consen 52 EDFKELVDAAHKRGIKVILDVVPN-HTSDDHPWFQDSLNYFDNPYSDYYYWRD------GEGSPPGNWYSYFGGSNWEYD 124 (316)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETS-EEETTSHHHHHHHTHTTSTTGTTBEEES------BTSTTSSTBBCSTTTSSEESC
T ss_pred hhhhhhhhccccccceEEEeeecc-ccccccccccccccccccccccceeecc------ccccccccccccccccccccc
Confidence 478889999999999999999985 222222341 122222110 0244443332 2233333
Q ss_pred -----------CCCCChHHHHHhchHHHHHHHHHHh-hhcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHHHH
Q 007886 350 -----------SPLYDWKAMEKDGFSWWIHRIRRAR-DLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDA 417 (586)
Q Consensus 350 -----------~P~y~w~~l~~~gy~ww~~rlr~~~-~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~a 417 (586)
+|-+|++.=+ --+..++-++..+ +.+|++|||++..+.. .--+.+..+
T Consensus 125 ~~~~~~~~~~~~~dln~~n~~--v~~~i~~~~~~w~~~giDGfR~D~~~~~~~------------------~~~~~~~~~ 184 (316)
T PF00128_consen 125 DWGDEYQFWSDLPDLNYENPE--VREYIIDVLKFWIEEGIDGFRLDAAKHIPK------------------EFWKEFRDE 184 (316)
T ss_dssp HHTHCHSSSTTSEEBETTSHH--HHHHHHHHHHHHHHTTESEEEETTGGGSSH------------------HHHHHHHHH
T ss_pred ccccccccccccchhhhhhhh--hhhhhcccccchhhceEeEEEEccccccch------------------hhHHHHhhh
Confidence 3444443210 1122333333333 3489999999998766 011233356
Q ss_pred HHHHcCCCcEEEcccCCCCHHHHHHHHHhC
Q 007886 418 IFRSVGNINIIAEDLGVITEDVVQLRKSIG 447 (586)
Q Consensus 418 le~~~~~~~vIgEDLG~vp~~V~~~l~~~g 447 (586)
+.+..++..+|||-++.-...++.......
T Consensus 185 ~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~ 214 (316)
T PF00128_consen 185 VKEEKPDFFLIGEVWGGDNEDLRQYAYDGY 214 (316)
T ss_dssp HHHHHTTSEEEEEESSSSHHHHHHHHHHGT
T ss_pred hhhhccccceeeeeccCCccccchhhhccc
Confidence 666668899999999987665554444433
No 16
>smart00642 Aamy Alpha-amylase domain.
Probab=93.90 E-value=0.14 Score=49.33 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=53.0
Q ss_pred EEecCccCCCCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhh
Q 007886 93 LLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (586)
Q Consensus 93 l~~l~SLrs~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~ 165 (586)
+++-|.-...-|.|||..++ +-++.+++.|.+.|+|+|++..... ....+.|.+.+-+.+||-|=+.+++.
T Consensus 3 ~~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~-~~~~~gY~~~d~~~i~~~~Gt~~d~~ 73 (166)
T smart00642 3 YPDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQG-YPSYHGYDISDYKQIDPRFGTMEDFK 73 (166)
T ss_pred eeccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCC-CCCCCCcCccccCCCCcccCCHHHHH
Confidence 33444333456799999987 5578999999999999999876321 12568899999999999887666553
No 17
>PRK03705 glycogen debranching enzyme; Provisional
Probab=93.90 E-value=0.21 Score=58.13 Aligned_cols=180 Identities=17% Similarity=0.233 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCC--Cccc--cCCCC--CCCChHH
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAF--SETG--QLWGS--PLYDWKA 357 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~F--s~~G--Q~WG~--P~y~w~~ 357 (586)
++++++.+.|+++||+||-|+-+ ++-+ +.-.....|... | =.+|.+| +..| .+|+. |.+|.+.
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV~--NHt~-~~~~~~~~~~~~--~------~d~~~yy~~~~~g~~~~~~g~g~~ln~~~ 310 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVVF--NHSA-ELDLDGPTLSLR--G------IDNRSYYWIREDGDYHNWTGCGNTLNLSH 310 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcc--cCcc-CcCCCCcchhcc--c------CCCccceEECCCCCcCCCCCccCcccCCC
Confidence 46888899999999999999986 2222 110000011110 0 0122322 1222 12321 2344332
Q ss_pred HHHhchHHHHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHHHHHHH--HcCCCcEEEcc--
Q 007886 358 MEKDGFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFR--SVGNINIIAED-- 431 (586)
Q Consensus 358 l~~~gy~ww~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~ale~--~~~~~~vIgED-- 431 (586)
-. =-+..++-++.-++ +.|++|+|.+--+-| + .+ +... ..++.+|.. ..+++.+|||.
T Consensus 311 p~--Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~------~-----~~-~~~~--~~~~~ai~~d~vl~~~~ligE~Wd 374 (658)
T PRK03705 311 PA--VVDWAIDCLRYWVETCHVDGFRFDLATVLGR------T-----PE-FRQD--APLFTAIQNDPVLSQVKLIAEPWD 374 (658)
T ss_pred HH--HHHHHHHHHHHHHHHhCCCEEEEEcHhhhCc------C-----cc-cchh--hHHHHHHhhCccccceEEEEeccc
Confidence 11 11345566666555 689999998755543 0 01 2221 346677765 45688999994
Q ss_pred cCC-------CC-------HHHHHHHHHh--CCCCeEEEEee--ecCCCCCCCCCCCCCCCcEEecCCCchhhHHHHH
Q 007886 432 LGV-------IT-------EDVVQLRKSI--GAPGMAVLQFG--FGSDSKNPHLPHNHERNQVVYTGTHDNDTIRSWW 491 (586)
Q Consensus 432 LG~-------vp-------~~V~~~l~~~--gi~G~~Vl~Fe--~~~~~~~~~~p~~~~~~sva~~~THD~~Tl~Gww 491 (586)
+|. .| +..|+.++.+ +-.++ +-.|. ..+..+-+....+.+..+|-|++.||+-||.-=.
T Consensus 375 ~~~~~~~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~-~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~ 451 (658)
T PRK03705 375 IGPGGYQVGNFPPPFAEWNDHFRDAARRFWLHGDLP-LGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCV 451 (658)
T ss_pred CCCChhhhcCCCcceEEEchHHHHHHHHHHccCCCc-HHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHH
Confidence 331 22 1233333333 10110 11111 1111111111122456799999999999997644
No 18
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.66 E-value=0.64 Score=53.65 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCeEEeeccc
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPI 306 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpi 306 (586)
+.++++-+.|+++||+||-|+-+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~ 251 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVY 251 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEc
Confidence 45788889999999999999986
No 19
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.88 E-value=0.95 Score=53.14 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhhHhc----------cccccccccCCCCceeecCCCCCCCccccCCCCCCC
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA----------NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLY 353 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa----------~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y 353 (586)
+.++++-+.|+++||+||-|+.+ ++-+.+-.. ++..|..+.+ -+..+.+ +..||+ .+
T Consensus 245 ~efk~LV~~~H~~GI~VIlDvV~--NHt~~~~~~~~~~~~~~~d~~~yy~~~~~--------~~~~~~~--~~g~gn-~l 311 (688)
T TIGR02100 245 AEFKTMVRALHDAGIEVILDVVY--NHTAEGNELGPTLSFRGIDNASYYRLQPD--------DKRYYIN--DTGTGN-TL 311 (688)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--CCccCcCCCCCcccccCCCCCcceEecCC--------CCceecC--CCCccc-cc
Confidence 35788889999999999999987 333322111 1122222110 0011111 112332 34
Q ss_pred ChHHHHHhchHHHHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHHHHHHH--HcCCCcEEE
Q 007886 354 DWKAMEKDGFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFR--SVGNINIIA 429 (586)
Q Consensus 354 ~w~~l~~~gy~ww~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~ale~--~~~~~~vIg 429 (586)
|.+.-.-. +..++-++.-++ +.|++|+|.+-.+.+-+ .+ + .....++.+|.+ ..+++.+||
T Consensus 312 n~~~p~vr--~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~---~~--------~--~~~~~~~~~i~~d~~~~~~~lig 376 (688)
T TIGR02100 312 NLSHPRVL--QMVMDSLRYWVTEMHVDGFRFDLATTLGREL---YG--------F--DMLSGFFTAIRQDPVLAQVKLIA 376 (688)
T ss_pred cCCCHHHH--HHHHHHHHHHHHHcCCcEEEEechhhhcccc---CC--------C--cccHHHHHHHHhCcccCCeEEEE
Confidence 44321111 334555555553 68899999887665431 01 1 013457777776 356789999
Q ss_pred c--ccC
Q 007886 430 E--DLG 433 (586)
Q Consensus 430 E--DLG 433 (586)
| |.|
T Consensus 377 E~W~~~ 382 (688)
T TIGR02100 377 EPWDIG 382 (688)
T ss_pred eeecCC
Confidence 9 554
No 20
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=92.76 E-value=0.87 Score=50.97 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=33.9
Q ss_pred eeEEEEecCccCCCCCCccchHHHHHHHHHHHHcCCCeeeeccCCCC
Q 007886 89 RAGVLLHPTSFRGPYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPP 135 (586)
Q Consensus 89 ~~Gvl~~l~SLrs~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~ 135 (586)
+.||++|.|-=.+.-|=-.+..+. +=+|.+++.|.+.|.|+|+...
T Consensus 2 ~~~~~~q~f~w~~~~~~~~~~~I~-~kldyl~~LGvtaIwl~P~~~~ 47 (479)
T PRK09441 2 RNGTMMQYFEWYLPNDGKLWNRLA-ERAPELAEAGITAVWLPPAYKG 47 (479)
T ss_pred CCceEEEEEEeccCCCccHHHHHH-HHHHHHHHcCCCEEEeCCCccC
Confidence 468999998766654422344565 4579999999999999998753
No 21
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.69 E-value=0.87 Score=55.99 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCeEEeeccc
Q 007886 285 QWQKVRNYAQMKGISIMGDMPI 306 (586)
Q Consensus 285 Ql~~~~~~A~~~GI~L~gDLpi 306 (586)
.++++-+.|+++||++|-|+-+
T Consensus 556 EfK~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEeccc
Confidence 5778888999999999999976
No 22
>PLN02361 alpha-amylase
Probab=91.35 E-value=3.7 Score=45.23 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCeEEeeccc
Q 007886 285 QWQKVRNYAQMKGISIMGDMPI 306 (586)
Q Consensus 285 Ql~~~~~~A~~~GI~L~gDLpi 306 (586)
+++++-+.|+++||++|.|+.+
T Consensus 77 el~~li~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 77 LLKSLLRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHHHHHHcCCEEEEEEcc
Confidence 3778889999999999999997
No 23
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.55 E-value=1.9 Score=49.91 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchH
Q 007886 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFS 364 (586)
Q Consensus 285 Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ 364 (586)
.++++.+.|+++||+||-|+.+ ++-+.|-+... .| +|.|..-.. |........||.+-+|...- .=-+
T Consensus 207 dlk~lV~~~H~~Gi~VilD~V~--NH~~~~~~~~~-~~----~~~~~y~~~---~~~~~~~~~w~~~~~~~~~~--~Vr~ 274 (613)
T TIGR01515 207 DFMYFVDACHQAGIGVILDWVP--GHFPKDDHGLA-EF----DGTPLYEHK---DPRDGEHWDWGTLIFDYGRP--EVRN 274 (613)
T ss_pred HHHHHHHHHHHCCCEEEEEecc--cCcCCccchhh-cc----CCCcceecc---CCccCcCCCCCCceecCCCH--HHHH
Confidence 4788889999999999999985 44444433211 12 111111111 11112234688877666322 1224
Q ss_pred HHHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCCceee--------CCchhHHH----HHHHHcCCCcEEEc
Q 007886 365 WWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKV--------GPGKSLFD----AIFRSVGNINIIAE 430 (586)
Q Consensus 365 ww~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~--------~p~~~l~~----ale~~~~~~~vIgE 430 (586)
..++-++.-++ +.|++|+|.+-.+. +|- .+ -..|.|.+ -...+++. .|.+..+++.+|||
T Consensus 275 ~l~~~~~~W~~ey~iDG~R~D~v~~~~-~~~--~~---~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE 348 (613)
T TIGR01515 275 FLVANALYWAEFYHIDGLRVDAVASML-YLD--YS---RDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAE 348 (613)
T ss_pred HHHHHHHHHHHHhCCcEEEEcCHHHhh-hhc--cc---cccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56666777665 58999999764322 110 01 01222322 11234553 45666789999999
Q ss_pred ccCCCC
Q 007886 431 DLGVIT 436 (586)
Q Consensus 431 DLG~vp 436 (586)
+-..-|
T Consensus 349 ~~~~~~ 354 (613)
T TIGR01515 349 ESTEWP 354 (613)
T ss_pred eCCCCc
Confidence 875443
No 24
>PLN00196 alpha-amylase; Provisional
Probab=89.53 E-value=5 Score=44.59 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=32.3
Q ss_pred eEEEEecCccCC-CCCCccchHHHHHHHHHHHHcCCCeeeeccCC
Q 007886 90 AGVLLHPTSFRG-PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLV 133 (586)
Q Consensus 90 ~Gvl~~l~SLrs-~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~ 133 (586)
.+||+|-|--.+ +-.-|++.-+. +=++.+++.|.+.|.|.|+.
T Consensus 24 ~~v~~Q~F~W~~~~~~gg~~~~i~-~kldyL~~LGvtaIWL~P~~ 67 (428)
T PLN00196 24 GQVLFQGFNWESWKQNGGWYNFLM-GKVDDIAAAGITHVWLPPPS 67 (428)
T ss_pred CCEEEEeeccCCCCCCCcCHHHHH-HHHHHHHHcCCCEEEeCCCC
Confidence 478889887543 22226777765 66899999999999999975
No 25
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.94 E-value=2.4 Score=49.49 Aligned_cols=134 Identities=17% Similarity=0.166 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhch
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGF 363 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy 363 (586)
+.++++.+.|+++||+||-|+.+ ++-+.|-+ .++.. +|.|...- .|...-.-.+||...+|-..- .=-
T Consensus 217 ~~~~~lv~~~H~~gi~VilD~v~--nH~~~~~~---~l~~~--dg~~~y~~---~~~~~g~~~~w~~~~~~~~~~--eVr 284 (639)
T PRK14706 217 EDFKYLVNHLHGLGIGVILDWVP--GHFPTDES---GLAHF--DGGPLYEY---ADPRKGYHYDWNTYIFDYGRN--EVV 284 (639)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cccCcchh---hhhcc--CCCcceec---cCCcCCcCCCCCCcccCCCCH--HHH
Confidence 45778889999999999999986 33343322 12222 23321110 111111124688766554221 111
Q ss_pred HHHHHHHHHHhh--hcCceeecccccc--ceee---EEeCCCCCCCCCceeeCCchhHHH----HHHHHcCCCcEEEccc
Q 007886 364 SWWIHRIRRARD--LYDEFRIDHFRGF--AGFW---AVPSEAKVAMDGRWKVGPGKSLFD----AIFRSVGNINIIAEDL 432 (586)
Q Consensus 364 ~ww~~rlr~~~~--~~g~lRIDH~~Gf--~r~W---~IP~g~~ta~~G~yv~~p~~~l~~----ale~~~~~~~vIgEDL 432 (586)
+..++-++.-++ +.|++|+|.+-.+ ..+| |+|.- .|.=....+.+++. ++.+..+++.+||||-
T Consensus 285 ~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~-----~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~ 359 (639)
T PRK14706 285 MFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNI-----HGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEES 359 (639)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccc-----cCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345555555554 7899999976654 2222 23321 11111112234453 4556678899999997
Q ss_pred CC
Q 007886 433 GV 434 (586)
Q Consensus 433 G~ 434 (586)
-.
T Consensus 360 ~~ 361 (639)
T PRK14706 360 TS 361 (639)
T ss_pred CC
Confidence 54
No 26
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=87.60 E-value=2.1 Score=40.03 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHH
Q 007886 286 WQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSW 365 (586)
Q Consensus 286 l~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~w 365 (586)
+.++-+.|+++||.++.-+.++++...++ .|||-|..+++|.| ...+.+...| |....+|=... +-
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~d~~~~~--~HPeW~~~~~~G~~-----~~~~~~~~~~--~~~~c~ns~Y~-----e~ 111 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSWDEDAAE--RHPEWFVRDADGRP-----MRGERFGYPG--WYTCCLNSPYR-----EF 111 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeecChHHHH--hCCceeeECCCCCC-----cCCCCcCCCC--ceecCCCccHH-----HH
Confidence 45667889999999999999997777776 79999999998886 1112222223 66666664443 34
Q ss_pred HHHHHHHHhhhc
Q 007886 366 WIHRIRRARDLY 377 (586)
Q Consensus 366 w~~rlr~~~~~~ 377 (586)
..+.|+.+++.|
T Consensus 112 ~~~~i~Ei~~~y 123 (132)
T PF14871_consen 112 LLEQIREILDRY 123 (132)
T ss_pred HHHHHHHHHHcC
Confidence 667777777765
No 27
>PRK10785 maltodextrin glucosidase; Provisional
Probab=86.49 E-value=2.9 Score=48.34 Aligned_cols=129 Identities=18% Similarity=0.253 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecC------C-CCCC--Cccc--cCC----
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGV------P-PDAF--SETG--QLW---- 348 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~Ga------P-PD~F--s~~G--Q~W---- 348 (586)
++++++.+.|+++||+||.|+.+ ++-|.+ ++ .|.....|. .|+ | .|.| ...| +.|
T Consensus 226 ~df~~Lv~~aH~rGikVilD~V~--NH~~~~---~~-~f~~~~~~~----~ga~~~~~spy~dwf~~~~~~~~~~w~g~~ 295 (598)
T PRK10785 226 AALLRLRHATQQRGMRLVLDGVF--NHTGDS---HP-WFDRHNRGT----GGACHHPDSPWRDWYSFSDDGRALDWLGYA 295 (598)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC--CcCCCC---CH-HHHHhhccc----cccccCCCCCcceeeEECCCCCcCCcCCCC
Confidence 46888999999999999999996 555544 11 233211111 122 1 1333 2223 234
Q ss_pred CCCCCChHH--HHHhchHHHHHHHHHHhh---hcCceeeccccccceeeEEeCCCCCCCCCceeeCCc---hhHHHHHHH
Q 007886 349 GSPLYDWKA--MEKDGFSWWIHRIRRARD---LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPG---KSLFDAIFR 420 (586)
Q Consensus 349 G~P~y~w~~--l~~~gy~ww~~rlr~~~~---~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~---~~l~~ale~ 420 (586)
++|-+|++. +++.=+.++.+-+++=++ ..|++|||-+.-+ |.+. | ...+. +++-.++++
T Consensus 296 ~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v------~~~~-----~--~~~~~~f~~~~~~~vk~ 362 (598)
T PRK10785 296 SLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHML------GEGG-----G--ARNNLQHVAGITQAAKE 362 (598)
T ss_pred cCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHh------cccc-----C--ccccHHHHHHHHHHHHh
Confidence 367766653 222222444455665555 6899999977543 3211 1 11111 123346777
Q ss_pred HcCCCcEEEcccCCC
Q 007886 421 SVGNINIIAEDLGVI 435 (586)
Q Consensus 421 ~~~~~~vIgEDLG~v 435 (586)
..+++.+|||-.+-.
T Consensus 363 ~~pd~~ligE~~~~~ 377 (598)
T PRK10785 363 ENPEAYVLGEHFGDA 377 (598)
T ss_pred hCCCeEEEEeccCCh
Confidence 788999999976543
No 28
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=85.71 E-value=1.2 Score=50.77 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 102 PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 102 ~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
.-|+|||..+. .-++.+++.|.+.|.|+|++.. +...++|.+..=+.+||-|=+.+++
T Consensus 20 ~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~----~~~~~gY~~~d~~~id~~~Gt~~~~ 77 (543)
T TIGR02403 20 GDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVS----PQKDNGYDVSDYYAINPLFGTMADF 77 (543)
T ss_pred CCCccCHHHHH-HhHHHHHHcCCCEEEECCcccC----CCCCCCCCccccCccCcccCCHHHH
Confidence 36899999986 6679999999999999999986 3456899999988899988555443
No 29
>PLN03244 alpha-amylase; Provisional
Probab=83.94 E-value=6.8 Score=46.62 Aligned_cols=136 Identities=15% Similarity=0.234 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCcc----ccCCCCCCCChHHH
Q 007886 283 QRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSET----GQLWGSPLYDWKAM 358 (586)
Q Consensus 283 ~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~----GQ~WG~P~y~w~~l 358 (586)
-+.++++...|+++||++|-|+-. ++-+.|..--...|. |.|-.+|... -+.||.-.+|-..-
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~--NH~~~d~~~GL~~fD-----------Gt~~~Yf~~~~~g~~~~WGs~~fnyg~~ 506 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLFD-----------GSNDCYFHTGKRGHHKHWGTRMFKYGDL 506 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecC--ccCCCccccchhhcC-----------CCccceeccCCCCccCCCCCceecCCCH
Confidence 457999999999999999999864 333444321122232 2222344432 13688776665422
Q ss_pred HHhchHHHHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCCceeeC-------CchhHH----HHHHHHcCCC
Q 007886 359 EKDGFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVG-------PGKSLF----DAIFRSVGNI 425 (586)
Q Consensus 359 ~~~gy~ww~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~-------p~~~l~----~ale~~~~~~ 425 (586)
+ --+..++-++.-++ ++|++|+|.|.... |+- .|. .+..|.|-.| .+-.+| ..|.+..+++
T Consensus 507 E--Vr~FLLsna~yWleEyhIDGFRfDaVtSML-Y~d--~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~ 580 (872)
T PLN03244 507 D--VLHFLISNLNWWITEYQIDGFQFHSLASMI-YTH--NGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKI 580 (872)
T ss_pred H--HHHHHHHHHHHHHHHhCcCcceeecchhhe-eec--ccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCe
Confidence 1 11334444444443 57899999884421 110 111 0111222222 222233 2456667899
Q ss_pred cEEEcccCCCCH
Q 007886 426 NIIAEDLGVITE 437 (586)
Q Consensus 426 ~vIgEDLG~vp~ 437 (586)
..||||.--.|-
T Consensus 581 itIAEDsS~~P~ 592 (872)
T PLN03244 581 ITIAEDATYYPG 592 (872)
T ss_pred EEEEEcCCCCcC
Confidence 999999865443
No 30
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=83.90 E-value=5.9 Score=45.11 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=28.3
Q ss_pred CCCccchHHHHHHHHHHHHcCCCeeeeccCCCC
Q 007886 103 YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPP 135 (586)
Q Consensus 103 ~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~ 135 (586)
-|+|||..+. .-++.+++.|.+.|.|+|+.+.
T Consensus 22 ~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~ 53 (539)
T TIGR02456 22 DGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQS 53 (539)
T ss_pred CCccCHHHHH-HhHHHHHHCCCCEEEECCCcCC
Confidence 5799999986 6689999999999999998763
No 31
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=83.76 E-value=10 Score=45.93 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCChh
Q 007886 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSA 313 (586)
Q Consensus 285 Ql~~~~~~A~~~GI~L~gDLpigV~~dsa 313 (586)
.++++-+.|+++||++|-|+-+ ++-+.
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVy--NHt~~ 431 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVY--NHTNA 431 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeec--ccccc
Confidence 4566778899999999999974 44443
No 32
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=83.30 E-value=6.8 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCeEEeeccc
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPI 306 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpi 306 (586)
+.++++.+.|+++||+||-|+-+
T Consensus 247 ~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 247 EEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcc
Confidence 46888899999999999999986
No 33
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=81.22 E-value=10 Score=43.40 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhh
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSAD 314 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaD 314 (586)
++++++-+.|+++||+||-|+.+ ++-|.|
T Consensus 75 ~~~~~lv~~ah~~gi~vilD~v~--NH~~~~ 103 (543)
T TIGR02403 75 ADFEELVSEAKKRNIKIMLDMVF--NHTSTE 103 (543)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--cccccc
Confidence 56889999999999999999986 444444
No 34
>PLN02960 alpha-amylase
Probab=80.53 E-value=3.8 Score=49.17 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=45.4
Q ss_pred CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 102 PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 102 ~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
.-|+|+|..++.+.++.+++.|.+.|+|+||.... ....-=|.++.=|+.++-|-+++++
T Consensus 409 e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~---~~~swGY~~~~yfa~~~~yGtp~df 468 (897)
T PLN02960 409 EPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHK---DYSSVGYKVTNFFAVSSRFGTPDDF 468 (897)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCC---CCCCCCCCcccCCCcccccCCHHHH
Confidence 34799999988788999999999999999997631 1223347777777778777655443
No 35
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.11 E-value=7.1 Score=44.68 Aligned_cols=112 Identities=13% Similarity=0.247 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCc-cccCCCCCCCChHHH-HHhc
Q 007886 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSE-TGQLWGSPLYDWKAM-EKDG 362 (586)
Q Consensus 285 Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~-~GQ~WG~P~y~w~~l-~~~g 362 (586)
+++++-+.|+++||+||-|+.+ ++-+.+- ..+ + .. + | +|+. ..-.||. .+|.+.- +..-
T Consensus 161 e~k~lV~~aH~~Gi~VilD~V~--NH~~~~~----~~~--~-------~~-~-~-y~~~~~~~~wg~-~~n~~~~~~~~v 221 (542)
T TIGR02402 161 DLKALVDAAHGLGLGVILDVVY--NHFGPEG----NYL--P-------RY-A-P-YFTDRYSTPWGA-AINFDGPGSDEV 221 (542)
T ss_pred HHHHHHHHHHHCCCEEEEEEcc--CCCCCcc----ccc--c-------cc-C-c-cccCCCCCCCCC-ccccCCCcHHHH
Confidence 5778889999999999999986 3322210 001 0 00 1 2 5543 2345664 3444421 0011
Q ss_pred hHHHHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHH----HHHHHHcCC---CcEEEcccC
Q 007886 363 FSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLF----DAIFRSVGN---INIIAEDLG 433 (586)
Q Consensus 363 y~ww~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~----~ale~~~~~---~~vIgEDLG 433 (586)
-+..++-++.-++ +.|++|+|.+-.+.+ . ...+++ .++.+..++ +.+|||+..
T Consensus 222 r~~i~~~~~~W~~e~~iDGfR~D~~~~~~~------~------------~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~ 283 (542)
T TIGR02402 222 RRYILDNALYWLREYHFDGLRLDAVHAIAD------T------------SAKHILEELAREVHELAAELRPVHLIAESDL 283 (542)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeCHHHhcc------c------------cHHHHHHHHHHHHHHHCCCCceEEEEEecCC
Confidence 1345566666654 788999996654432 0 112344 355555666 899999863
No 36
>PLN02960 alpha-amylase
Probab=78.78 E-value=11 Score=45.33 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCc----cccCCCCCCCChHHHH
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSE----TGQLWGSPLYDWKAME 359 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~----~GQ~WG~P~y~w~~l~ 359 (586)
+.++++.+.|+++||+||-|+-. ++-+.|....-..|. |.+.-+|.. .-..||...+|-..-
T Consensus 466 ~dfk~LVd~aH~~GI~VILDvV~--NH~~~d~~~~L~~FD-----------G~~~~Yf~~~~~g~~~~WG~~~fNy~~~- 531 (897)
T PLN02960 466 DDFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLFD-----------GSNDCYFHSGKRGHHKRWGTRMFKYGDH- 531 (897)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cccCCccccchhhcC-----------CCccceeecCCCCccCCCCCcccCCCCH-
Confidence 46899999999999999999864 434444210011121 222223331 123599877665431
Q ss_pred HhchHHHHHHHHHHhh--hcCceeeccccccceeeEEeCCCCCCCCC-------ceeeCCchhHHH----HHHHHcCCCc
Q 007886 360 KDGFSWWIHRIRRARD--LYDEFRIDHFRGFAGFWAVPSEAKVAMDG-------RWKVGPGKSLFD----AIFRSVGNIN 426 (586)
Q Consensus 360 ~~gy~ww~~rlr~~~~--~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G-------~yv~~p~~~l~~----ale~~~~~~~ 426 (586)
.=-+..++-++.-++ +.|++|+|-|-.+.-+ - .|. ....| .++......+|. .|.+..+++.
T Consensus 532 -eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~-d--~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vi 606 (897)
T PLN02960 532 -EVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYT-H--NGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNII 606 (897)
T ss_pred -HHHHHHHHHHHHHHHHHCCCceeecccceeeee-c--cCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeE
Confidence 112445555555553 6889999977553210 0 010 01122 122222333442 3445568999
Q ss_pred EEEcccCCCCHHH
Q 007886 427 IIAEDLGVITEDV 439 (586)
Q Consensus 427 vIgEDLG~vp~~V 439 (586)
+||||-..-|.-+
T Consensus 607 lIAEdss~~P~vt 619 (897)
T PLN02960 607 TIAEDATFYPGLC 619 (897)
T ss_pred EEEECCCCCCCcc
Confidence 9999986555433
No 37
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=77.70 E-value=3.7 Score=47.02 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=45.6
Q ss_pred CCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 103 YGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 103 ~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
-|+|||..+. .-++.+++.|.+.|.|+|+... +.....|.+..=+.+||-|=+.+++
T Consensus 27 ~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~----~~~~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 27 SGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVS----PQVDNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred CCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCC----CCCCCCCCcccCCCcCcccCCHHHH
Confidence 5799998875 5689999999999999999864 3345789998888888888555444
No 38
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=77.31 E-value=4.6 Score=46.84 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhh
Q 007886 106 GDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (586)
Q Consensus 106 GDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~ 165 (586)
|+|..++.++++.+++.|.+.|+|+|+.... ....--|.++.=++.||-|=+++++.
T Consensus 153 g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~---~~~~wGY~~~~y~~~~~~~Gt~~dlk 209 (613)
T TIGR01515 153 LSYRELADQLIPYVKELGFTHIELLPVAEHP---FDGSWGYQVTGYYAPTSRFGTPDDFM 209 (613)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCC---CCCCCCCCcccCcccccccCCHHHHH
Confidence 8999988788899999999999999997641 11234688888888888887776664
No 39
>PLN02784 alpha-amylase
Probab=77.08 E-value=28 Score=42.10 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEeeccc
Q 007886 282 FQRQWQKVRNYAQMKGISIMGDMPI 306 (586)
Q Consensus 282 ~~~Ql~~~~~~A~~~GI~L~gDLpi 306 (586)
-..+|+++-+.|+++||++|.|+-+
T Consensus 566 T~~ELk~LI~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 566 TIDELKDLVKSFHEVGIKVLGDAVL 590 (894)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3578999999999999999999986
No 40
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=76.76 E-value=0.41 Score=54.12 Aligned_cols=92 Identities=15% Similarity=0.065 Sum_probs=79.1
Q ss_pred EEeeccccccCChhhHhccccc--cccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHHHH-----HHH
Q 007886 300 IMGDMPIYVGYHSADVWANKKH--FLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWIHR-----IRR 372 (586)
Q Consensus 300 L~gDLpigV~~dsaDvWa~~~~--F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~r-----lr~ 372 (586)
...+-.++.++...|+++.++. |..+ ...+++|+..+..+++|+.+.+.+..+-+..|++|+++ .-.
T Consensus 71 Ys~~S~~a~N~~~Id~~~l~e~~~~~~~------~~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~~~~~~f~ 144 (520)
T COG1640 71 YSPSSRRALNPLYIDVEALPEFQDFLLD------KDLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRKEREKDFA 144 (520)
T ss_pred CCchhhhccCceeecHHHhhhhhhhccH------HHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4445567788888999999999 7776 47999999999999999999999999999999999999 455
Q ss_pred HhhhcCceeecccccccee--------eEEeCC
Q 007886 373 ARDLYDEFRIDHFRGFAGF--------WAVPSE 397 (586)
Q Consensus 373 ~~~~~g~lRIDH~~Gf~r~--------W~IP~g 397 (586)
.+......++||+-.|+++ |-....
T Consensus 145 ~F~~~~~~wL~d~A~F~Al~e~~~~~~W~~Wp~ 177 (520)
T COG1640 145 AFCQEEGYWLDDYALFMALKEHFHAAGWQVWPD 177 (520)
T ss_pred HHHHhccchhHHHHHHHHHHHHhcccccCCCCh
Confidence 6666799999999999999 876644
No 41
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=74.53 E-value=4.7 Score=45.95 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=25.9
Q ss_pred hcCceeeccccccceeeEEeCCCCCCCCCceeeCC-chhHH----HHHHHHcCCCcEEEcc
Q 007886 376 LYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGP-GKSLF----DAIFRSVGNINIIAED 431 (586)
Q Consensus 376 ~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p-~~~l~----~ale~~~~~~~vIgED 431 (586)
..|++|+|-+.-+++ +.+ +.+..-| ..+++ ..+.+..+++.+|||-
T Consensus 190 GvDGfRlDav~~~~~----~~~------~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~ 240 (539)
T TIGR02456 190 GVDGFRLDAVPYLYE----REG------TSCENLPETHEFLKRLRKMVDREYPGRMLLAEA 240 (539)
T ss_pred CCCEEEEecHHhhhc----cCC------CccCCCchHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 699999997654422 111 1111112 23444 3555666789999994
No 42
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=71.70 E-value=6 Score=45.26 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=44.3
Q ss_pred CccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 105 IGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 105 IGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
-|||..++ .-++.+++.|.+.|+|+|+++.. ...+..|.+..-++.+|-|=+++++
T Consensus 107 ~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~~~---~~~~~GY~~~~~~~~~~~~G~~~e~ 162 (542)
T TIGR02402 107 EGTFDAAI-EKLPYLADLGITAIELMPVAQFP---GTRGWGYDGVLPYAPHNAYGGPDDL 162 (542)
T ss_pred CCCHHHHH-HhhHHHHHcCCCEEEeCccccCC---CCCCCCCCccCccccccccCCHHHH
Confidence 58999987 45699999999999999997642 1245679999888888888766554
No 43
>PRK12568 glycogen branching enzyme; Provisional
Probab=70.63 E-value=8.5 Score=45.62 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=44.4
Q ss_pred EecCccCC--CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccch
Q 007886 94 LHPTSFRG--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLE 162 (586)
Q Consensus 94 ~~l~SLrs--~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le 162 (586)
+|+-|.+. +-+.++|..++.++++.+++.|.+.|+++||.... . ...-=|.|..-++.+|-|=+++
T Consensus 252 vHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~-~--~~~wGY~~~~~~a~~~~~G~~~ 319 (730)
T PRK12568 252 VHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHP-F--GGSWGYQPLGLYAPTARHGSPD 319 (730)
T ss_pred EEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCC-C--CCCCCCCCCcCCccCcccCCHH
Confidence 45555542 23467999999889999999999999999996431 0 1122366666666666664433
No 44
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=70.26 E-value=3.3 Score=41.90 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 106 GDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 106 GDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
|||..+. +=+|.+++.|.+.|.|+|+... +.....|.+..=+.+||-|=+.+++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~----~~~~~gY~~~d~~~vd~~~Gt~~d~ 54 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFES----PNGYHGYDPSDYYAVDPRFGTMEDF 54 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EES----SSSTTTTSESEEEEESTTTBHHHHH
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccc----ccccccccceeeeccccccchhhhh
Confidence 8999876 5579999999999999999884 2366789999988899988554444
No 45
>PRK12568 glycogen branching enzyme; Provisional
Probab=67.10 E-value=28 Score=41.46 Aligned_cols=133 Identities=15% Similarity=0.229 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhch
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGF 363 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy 363 (586)
+.++++.+.|+++||++|-|+.+ ++-+.|.+.. ..|. |.+..-- +|.-....++|+.-.||...-+-.
T Consensus 319 ~dfk~lV~~~H~~Gi~VIlD~V~--nH~~~d~~~l-~~fd----g~~~Ye~---~d~~~g~~~~W~~~~~N~~~peVr-- 386 (730)
T PRK12568 319 DGFAQFVDACHRAGIGVILDWVS--AHFPDDAHGL-AQFD----GAALYEH---ADPREGMHRDWNTLIYNYGRPEVT-- 386 (730)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--ccCCcccccc-ccCC----Ccccccc---CCCcCCccCCCCCeecccCCHHHH--
Confidence 56888899999999999999986 3333332211 1121 1111110 111111235787655666543222
Q ss_pred HHHHHHHHHHhh--hcCceeeccccccc-eeeEEeCCCCCCCCCceeeC--------CchhHHH----HHHHHcCCCcEE
Q 007886 364 SWWIHRIRRARD--LYDEFRIDHFRGFA-GFWAVPSEAKVAMDGRWKVG--------PGKSLFD----AIFRSVGNINII 428 (586)
Q Consensus 364 ~ww~~rlr~~~~--~~g~lRIDH~~Gf~-r~W~IP~g~~ta~~G~yv~~--------p~~~l~~----ale~~~~~~~vI 428 (586)
+..++-++.-++ +.|++|+|.+-.+. +=+ + -.+|.|++- ...+++. ++.+..+++.+|
T Consensus 387 ~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~----~---r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 387 AYLLGSALEWIEHYHLDGLRVDAVASMLYRDY----G---RAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred HHHHHHHHHHHHHhCceEEEEcCHhHhhhhcc----c---cccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 234444444443 68999999875432 111 1 113444431 1224553 567788999999
Q ss_pred EcccCCC
Q 007886 429 AEDLGVI 435 (586)
Q Consensus 429 gEDLG~v 435 (586)
||+-..-
T Consensus 460 AEest~~ 466 (730)
T PRK12568 460 AEESTAW 466 (730)
T ss_pred EEcCCCC
Confidence 9986543
No 46
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=66.90 E-value=8.7 Score=44.69 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHHHHHcCCCeeeeccC--CCCCCCCC-CCCCCCCccccccccc
Q 007886 106 GDFGAEAFRFIDWLHQAGCSVWQVLPL--VPPGRKAN-EEGSPYSGQDANCGNT 156 (586)
Q Consensus 106 GDfgdla~~~~d~~a~~G~~~~qilPL--~~~~~~~~-~~~SPY~p~Sr~alNP 156 (586)
|.+. +|.++++.++++|.+.|+++|| ||-...=+ ..--+|+|.|| +++|
T Consensus 162 ~~~e-~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sr-yGtP 213 (628)
T COG0296 162 GYFE-LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSR-YGTP 213 (628)
T ss_pred CHHH-HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccccc-CCCH
Confidence 4443 5789999999999999999999 44322111 14456777774 4655
No 47
>PRK10785 maltodextrin glucosidase; Provisional
Probab=65.72 E-value=9.1 Score=44.30 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhh
Q 007886 106 GDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (586)
Q Consensus 106 GDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~ 165 (586)
|||.-+. +=+|.+++.|.+.|.|+|+++.. ....|.+.+=+.+||.|=+.+++.
T Consensus 176 GDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~-----s~hgYd~~Dy~~iDp~~Gt~~df~ 229 (598)
T PRK10785 176 GDLDGIS-EKLPYLKKLGVTALYLNPIFTAP-----SVHKYDTEDYRHVDPQLGGDAALL 229 (598)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCcccCC-----CCCCcCcccccccCcccCCHHHHH
Confidence 9999876 55799999999999999998752 356899999999999987766653
No 48
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=62.42 E-value=5.3 Score=41.61 Aligned_cols=79 Identities=28% Similarity=0.378 Sum_probs=49.7
Q ss_pred HcCCeEEeeccccccCChhhHhccccccc-cccCCCCceeecCCCC---CCCccccCCCCC----CCChHHHHHhchHHH
Q 007886 295 MKGISIMGDMPIYVGYHSADVWANKKHFL-LNRRGFPLEVSGVPPD---AFSETGQLWGSP----LYDWKAMEKDGFSWW 366 (586)
Q Consensus 295 ~~GI~L~gDLpigV~~dsaDvWa~~~~F~-l~~~g~p~~~~GaPPD---~Fs~~GQ~WG~P----~y~w~~l~~~gy~ww 366 (586)
.+-|-|+||+= |++.--|+|.....+. .+ .+|.+|. .|. .=.++|.- ..+|+ ...|.||
T Consensus 140 ~~~~vl~GD~N--Iap~~iDv~~~~~~~~n~~-------~~~f~~eeR~~~~-~ll~~G~~D~~R~~~p~---~~~YTwW 206 (261)
T COG0708 140 GKPVVLCGDFN--IAPEEIDVANPKKRWLNEG-------NSGFLPEERAWFR-RLLNAGFVDTFRLFHPE---PEKYTWW 206 (261)
T ss_pred CCCEEEecccc--cCCchhcccCchhhhhcCC-------CCCCCHHHHHHHH-HHHHcchhhhhHhhCCC---CCccccc
Confidence 35588999987 5899999996633332 33 6777776 111 11122311 11111 1349999
Q ss_pred HHHHHHHhhhcCceeeccccc
Q 007886 367 IHRIRRARDLYDEFRIDHFRG 387 (586)
Q Consensus 367 ~~rlr~~~~~~g~lRIDH~~G 387 (586)
--|.+..-+. =+.||||++.
T Consensus 207 ~YR~~~~~~n-~G~RID~~l~ 226 (261)
T COG0708 207 DYRANAARRN-RGWRIDYILV 226 (261)
T ss_pred ccccchhhhc-CceeEEEEEe
Confidence 9998866666 7899999975
No 49
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=57.96 E-value=15 Score=40.49 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhh
Q 007886 102 PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (586)
Q Consensus 102 ~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~ 165 (586)
..|+|||..+. +-+|.++..|.+.|-|+|+... +...-.|....=..+||.|=..+++.
T Consensus 22 ~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s----~~~~~gY~~~Dy~~id~~~Gt~~d~~ 80 (505)
T COG0366 22 YDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFES----PQADHGYDVSDYTKVDPHFGTEEDFK 80 (505)
T ss_pred CCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCC----CccCCCccccchhhcCcccCCHHHHH
Confidence 47899999875 7789999999999999999885 24567788888888888887777664
No 50
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=54.49 E-value=38 Score=38.94 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCeEEeeccccccCChh
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPIYVGYHSA 313 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpigV~~dsa 313 (586)
+.++++.+.|+++||+||-|+.+ ++-|.
T Consensus 81 ~d~~~lv~~~h~~gi~vilD~V~--NH~s~ 108 (551)
T PRK10933 81 DDFDELVAQAKSRGIRIILDMVF--NHTST 108 (551)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC--CCccC
Confidence 45788899999999999999986 44444
No 51
>PRK14706 glycogen branching enzyme; Provisional
Probab=53.75 E-value=25 Score=41.25 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=44.4
Q ss_pred CccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhh
Q 007886 105 IGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELV 165 (586)
Q Consensus 105 IGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~ 165 (586)
.|.|..++.++++.++++|.+.|+|+||.... ....--|.+..=|+.++-|=+++++.
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~---~~~~wGY~~~~~~~~~~~~g~~~~~~ 220 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHP---FDGSWGYQVTGYYAPTSRLGTPEDFK 220 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCC---CCCCCCcCcccccccccccCCHHHHH
Confidence 57888888888899999999999999996531 11234577777788888887777664
No 52
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=53.13 E-value=17 Score=40.40 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=44.4
Q ss_pred CCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCccccccccccccc
Q 007886 104 GIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLIS 160 (586)
Q Consensus 104 GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~ 160 (586)
=+|.|.+-- ..+.-+++.|...|-+.||+..| ...||||-..-..+||.+..
T Consensus 17 ~~G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G----~S~S~YSI~Dql~~~~~~~~ 68 (423)
T PF14701_consen 17 WMGPFSDWE-KHLKVISEKGYNMIHFTPLQERG----ESNSPYSIYDQLKFDPDFFP 68 (423)
T ss_pred hcCCHhHHH-HHHHHHHHcCCcEEEecccccCC----CCCCCccccchhhcChhhcC
Confidence 468888864 67799999999999999999985 56799999999999998754
No 53
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.90 E-value=6.3 Score=36.54 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCeEEee-ccccccCChhhHhccccccccccCCCCceeec
Q 007886 288 KVRNYAQMKGISIMGD-MPIYVGYHSADVWANKKHFLLNRRGFPLEVSG 335 (586)
Q Consensus 288 ~~~~~A~~~GI~L~gD-LpigV~~dsaDvWa~~~~F~l~~~g~p~~~~G 335 (586)
.+-+.++...+||..+ ||+ .|+|+|.-=|+=.++.+|.|-+-+|
T Consensus 31 pvpR~~nR~~LGl~~~~lpf----~G~DiW~~YElSwLn~~G~PqVaig 75 (137)
T COG2904 31 PVPRSLNRDPLGLTANNLPF----HGADIWTLYELSWLNAKGLPQVAIG 75 (137)
T ss_pred cCccccCccccccccCCCCc----cccchhhhhhhhhhccCCCceEEEE
Confidence 3455566777899999 887 7999999999999999999977766
No 54
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=43.05 E-value=18 Score=26.17 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=24.9
Q ss_pred CCCChHHHHHhchHHHHHHHHHHhhhcCceee
Q 007886 351 PLYDWKAMEKDGFSWWIHRIRRARDLYDEFRI 382 (586)
Q Consensus 351 P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRI 382 (586)
|+|.|...+=.++-=++++|+...+.||+++|
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KI 32 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKI 32 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEe
Confidence 56777777778888999999999999999987
No 55
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=42.54 E-value=31 Score=26.09 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCCCChHHHHHhchHHHHHHHHHHhhhcCceee
Q 007886 350 SPLYDWKAMEKDGFSWWIHRIRRARDLYDEFRI 382 (586)
Q Consensus 350 ~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRI 382 (586)
-|+|.|...+-.++-=+++.|+...+.||+++|
T Consensus 2 iPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KI 34 (42)
T smart00545 2 IPVFYPTMEEFKDPLAYISKIRPQAEKYGICKV 34 (42)
T ss_pred CCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEE
Confidence 588888888888999999999999999999998
No 56
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.26 E-value=79 Score=34.14 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhc--cccccccccCCCCceeecCCCCCCCccccCCCCCCCChHH
Q 007886 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA--NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKA 357 (586)
Q Consensus 280 w~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa--~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~ 357 (586)
+.-.+|++++.+||+++||.||=-+-+ |+=+..|. .|++-+.+....+....|.+++ +.|+.
T Consensus 82 ~YT~~di~eiv~yA~~rgI~VIPEID~---PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~------------~L~~~- 145 (357)
T cd06563 82 FYTQEEIREIVAYAAERGITVIPEIDM---PGHALAALAAYPELGCTGGPGSVVSVQGVVSN------------VLCPG- 145 (357)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEecCC---chhHHHHHHhCccccCCCCCCccccccCcCCC------------ccCCC-
Confidence 336789999999999999999876663 23334443 5666554322111111222222 23333
Q ss_pred HHHhchHHHHHHHHHHhhhcC
Q 007886 358 MEKDGFSWWIHRIRRARDLYD 378 (586)
Q Consensus 358 l~~~gy~ww~~rlr~~~~~~g 378 (586)
....|+.-++.++.+++.|.
T Consensus 146 -~~~t~~f~~~ll~E~~~lF~ 165 (357)
T cd06563 146 -KPETYTFLEDVLDEVAELFP 165 (357)
T ss_pred -ChhHHHHHHHHHHHHHHhCC
Confidence 24578899999999999875
No 57
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=39.86 E-value=9.3 Score=37.56 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhcCceeeccccc
Q 007886 366 WIHRIRRARDLYDEFRIDHFRG 387 (586)
Q Consensus 366 w~~rlr~~~~~~g~lRIDH~~G 387 (586)
.-+.|...++---++||||++|
T Consensus 156 Ln~~l~~~f~E~qIyRIDHYLG 177 (183)
T PF00479_consen 156 LNDQLAEYFDEEQIYRIDHYLG 177 (183)
T ss_dssp HHHHHCTTS-GGGEEE--GGGG
T ss_pred HHHHHHHhCCHHHeeehhhhcc
Confidence 4456666777778999999998
No 58
>PRK09505 malS alpha-amylase; Reviewed
Probab=38.82 E-value=92 Score=36.94 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCeEEeeccccccCChhhH------hccccccccccCCCCceeecCCCCCCCc-------------
Q 007886 283 QRQWQKVRNYAQMKGISIMGDMPIYVGYHSADV------WANKKHFLLNRRGFPLEVSGVPPDAFSE------------- 343 (586)
Q Consensus 283 ~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDv------Wa~~~~F~l~~~g~p~~~~GaPPD~Fs~------------- 343 (586)
.++++++-+.|+++||+||-|+-+ ++-|.+. |+...+|..+.+ .....|..|+.
T Consensus 291 ~~dfk~Lv~~aH~~Gi~VilD~V~--NH~~~~~~~d~~~~~f~~~~~~~~~-----~~~~~~~~~~~w~~~~~~~~~~~~ 363 (683)
T PRK09505 291 EADLRTLVDEAHQRGIRILFDVVM--NHTGYATLADMQEFQFGALYLSGDE-----NKKTLGERWSDWQPAAGQNWHSFN 363 (683)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc--CCCcccccccccccchhhhhhhccc-----cccccCcccccccccccccccccc
Q ss_pred --------------cccCC---------------------CCCCCChH-------------------------HHHHhch
Q 007886 344 --------------TGQLW---------------------GSPLYDWK-------------------------AMEKDGF 363 (586)
Q Consensus 344 --------------~GQ~W---------------------G~P~y~w~-------------------------~l~~~gy 363 (586)
.|.+| ++|-+|-+ .+++.=.
T Consensus 364 ~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~ 443 (683)
T PRK09505 364 DYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLT 443 (683)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcCceeeccc
Q 007886 364 SWWIHRIRRARDLYDEFRIDHF 385 (586)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~ 385 (586)
.|-+.=|+. .-.|++|||.+
T Consensus 444 ~~ik~Wv~e--~GIDGfRlDaa 463 (683)
T PRK09505 444 HWLSQWVRD--YGIDGFRVDTA 463 (683)
T ss_pred HHHHHHHHh--cCCCEEEEech
No 59
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.35 E-value=73 Score=33.54 Aligned_cols=75 Identities=11% Similarity=0.267 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCeEEeeccccccCChhhHhc---cccccccccCC-CCceeecCCCCCCCccccCCCCCCCChHHHHHhch
Q 007886 288 KVRNYAQMKGISIMGDMPIYVGYHSADVWA---NKKHFLLNRRG-FPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGF 363 (586)
Q Consensus 288 ~~~~~A~~~GI~L~gDLpigV~~dsaDvWa---~~~~F~l~~~g-~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy 363 (586)
++.+..+++|++++-=+--+|..++. ... ..+.|..+.+| .|. .|.-|+....-++-...+..
T Consensus 74 ~mi~~l~~~G~k~~l~i~P~i~~~s~-~~~e~~~~g~~vk~~~g~~~~------------~~~~w~g~~~~~Dftnp~a~ 140 (303)
T cd06592 74 GMIDQLHDLGFRVTLWVHPFINTDSE-NFREAVEKGYLVSEPSGDIPA------------LTRWWNGTAAVLDFTNPEAV 140 (303)
T ss_pred HHHHHHHHCCCeEEEEECCeeCCCCH-HHHhhhhCCeEEECCCCCCCc------------ccceecCCcceEeCCCHHHH
Confidence 44455677999887777777877653 332 24566665444 221 12233322223333333456
Q ss_pred HHHHHHHHHHhh
Q 007886 364 SWWIHRIRRARD 375 (586)
Q Consensus 364 ~ww~~rlr~~~~ 375 (586)
+||.+.+++++.
T Consensus 141 ~w~~~~~~~~~~ 152 (303)
T cd06592 141 DWFLSRLKSLQE 152 (303)
T ss_pred HHHHHHHHHHHH
Confidence 899999998884
No 60
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=36.11 E-value=1.1e+02 Score=35.36 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhcccccccccc--CCCC-------ceeecCCCCCC---------
Q 007886 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNR--RGFP-------LEVSGVPPDAF--------- 341 (586)
Q Consensus 280 w~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~--~g~p-------~~~~GaPPD~F--------- 341 (586)
|-..+.+.++-..++++||.||.|+++=-..+ +--|..+..+.... +..| ......||-.+
T Consensus 84 fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~-~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~ 162 (545)
T KOG0471|consen 84 FGTEEDFKELILAMHKLGIKIIADLVINHRSD-EVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAW 162 (545)
T ss_pred ccHHHHHHHHHHHHhhcceEEEEeeccccCCc-cccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccC
Confidence 55777888889999999999999999733322 11233333222211 0011 01223344321
Q ss_pred --Cc-cccCC------CCCCCChHHHHHhchHHHHHHHHH--HhhhcCceeecccccccee
Q 007886 342 --SE-TGQLW------GSPLYDWKAMEKDGFSWWIHRIRR--ARDLYDEFRIDHFRGFAGF 391 (586)
Q Consensus 342 --s~-~GQ~W------G~P~y~w~~l~~~gy~ww~~rlr~--~~~~~g~lRIDH~~Gf~r~ 391 (586)
.. .+|.| ++|..||+.-+= -+-+.+.++. .-..++.+|||++.+..--
T Consensus 163 ~~~e~~~~~~l~~~~~~~pDln~~n~~V--~~~~~~~l~~~~~~~gvdGfRiD~v~~~~~~ 221 (545)
T KOG0471|consen 163 PFDEGRQKYYLGQFAVLQPDLNYENPDV--RKAIKEWLRDFWLEKGVDGFRIDAVKGYAGE 221 (545)
T ss_pred cccccccceeccchhhcCCCCCCCCHHH--HHHHHHHHHHHHhhcCCCeEEEEcccccccc
Confidence 11 12222 356666655332 3445555552 2256889999999998743
No 61
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=36.08 E-value=99 Score=33.16 Aligned_cols=82 Identities=12% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhc--cccccccccCCCCceeecCCCCCCCccccCCCCCCCChHH
Q 007886 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWA--NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKA 357 (586)
Q Consensus 280 w~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa--~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~ 357 (586)
+.-.+|++++.+||+++||.||-.+-+ |+=+..|. .|++-+. |-+++.+. +-..+....|+.
T Consensus 71 ~YT~~di~elv~yA~~rgI~vIPEiD~---PGH~~a~~~~~p~l~~~----------~~~~~~~~--~~~~~~~~l~~~- 134 (329)
T cd06568 71 YYTQEDYKDIVAYAAERHITVVPEIDM---PGHTNAALAAYPELNCD----------GKAKPLYT--GIEVGFSSLDVD- 134 (329)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecCC---cHHHHHHHHhChhhccC----------CCCCcccc--ccCCCCcccCCC-
Confidence 446889999999999999999877664 23344443 4554332 21222221 111122344443
Q ss_pred HHHhchHHHHHHHHHHhhhcC
Q 007886 358 MEKDGFSWWIHRIRRARDLYD 378 (586)
Q Consensus 358 l~~~gy~ww~~rlr~~~~~~g 378 (586)
....|+.-++.++.+++.|.
T Consensus 135 -~~~t~~fl~~v~~E~~~~f~ 154 (329)
T cd06568 135 -KPTTYEFVDDVFRELAALTP 154 (329)
T ss_pred -CHHHHHHHHHHHHHHHHhCC
Confidence 34578889999999998875
No 62
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=32.74 E-value=1.1e+02 Score=32.74 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCeEEeeccccccCCh----hhHh---ccccccccccCCCCceee-----cCCCCCCCccccCCCCCCCC
Q 007886 287 QKVRNYAQMKGISIMGDMPIYVGYHS----ADVW---ANKKHFLLNRRGFPLEVS-----GVPPDAFSETGQLWGSPLYD 354 (586)
Q Consensus 287 ~~~~~~A~~~GI~L~gDLpigV~~ds----aDvW---a~~~~F~l~~~g~p~~~~-----GaPPD~Fs~~GQ~WG~P~y~ 354 (586)
+++.+..+++|++++.-+--+|..++ ..++ ...+.|..+.+|.|...- ++=||.+|
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftn------------ 136 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLN------------ 136 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCC------------
Confidence 34445566799988887777777652 2222 345677777666652111 11133332
Q ss_pred hHHHHHhchHHHHHHHHHHhhh
Q 007886 355 WKAMEKDGFSWWIHRIRRARDL 376 (586)
Q Consensus 355 w~~l~~~gy~ww~~rlr~~~~~ 376 (586)
| +..+||.+.++..+..
T Consensus 137 p-----~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 137 P-----NTQEWWTDEIKDFHDQ 153 (339)
T ss_pred H-----HHHHHHHHHHHHHHhc
Confidence 2 4578999999887754
No 63
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=32.29 E-value=26 Score=32.65 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred CCcEEecCCCchhhHHHHHhCC
Q 007886 473 RNQVVYTGTHDNDTIRSWWDTS 494 (586)
Q Consensus 473 ~~sva~~~THD~~Tl~Gww~~~ 494 (586)
-.|||+|||||..|+.-|-.++
T Consensus 88 i~Amc~tg~~~~~sL~~WI~~L 109 (126)
T PF14784_consen 88 IFAMCMTGTSDKDSLLSWIRGL 109 (126)
T ss_pred EEEEEeccCCCHHHHHHHHHHH
Confidence 3699999999999999999764
No 64
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=32.27 E-value=53 Score=41.77 Aligned_cols=62 Identities=19% Similarity=0.095 Sum_probs=49.4
Q ss_pred EEecCccC--C--CCCCccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccc
Q 007886 93 LLHPTSFR--G--PYGIGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLI 159 (586)
Q Consensus 93 l~~l~SLr--s--~~GIGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI 159 (586)
.+++-||. + +-=+|-|.+- .+-++.+++.|...|-++||++.+ ..+|||+-..=+-.||.+-
T Consensus 112 ~lPl~~i~iqTvlsK~mG~~~~w-~~~L~~ik~lGyN~IhftPI~~~G----~SnS~Ysi~Dyl~idP~~~ 177 (1464)
T TIGR01531 112 FLPLDSIALQTVLAKLLGPLSEW-EPRLRVAKEKGYNMIHFTPLQELG----GSNSCYSLYDQLQLNQHFK 177 (1464)
T ss_pred ccCcCceeeeeehhhhcCCHHHH-HHHHHHHHHcCCCEEEeCCCccCC----CCCCCccccchhhcChhhc
Confidence 45555554 1 2347899774 467899999999999999999986 3579999999999999885
No 65
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.40 E-value=37 Score=40.24 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=38.4
Q ss_pred ccchHHHHHH--HHHHHHcCCCeeeeccCCCCCCCCCCC------CCCCCccccccccccccc
Q 007886 106 GDFGAEAFRF--IDWLHQAGCSVWQVLPLVPPGRKANEE------GSPYSGQDANCGNTLLIS 160 (586)
Q Consensus 106 GDfgdla~~~--~d~~a~~G~~~~qilPL~~~~~~~~~~------~SPY~p~Sr~alNPlyI~ 160 (586)
|.|.-++ .. ++++++.|.+.||+||++.-....... .==|.|..=|+..|-|-+
T Consensus 195 GTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss 256 (697)
T COG1523 195 GTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYAS 256 (697)
T ss_pred cceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccC
Confidence 6677665 44 999999999999999997643211111 112888888999998853
No 66
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=30.20 E-value=1.2e+02 Score=35.50 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhch-
Q 007886 285 QWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGF- 363 (586)
Q Consensus 285 Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy- 363 (586)
+++++-..|+++||++|-|.=- ++-+.|-... ..|+ |.+ .--=.|.++-..|.||.-+||=.+-+=..|
T Consensus 215 dfk~fVD~aH~~GIgViLD~V~--~HF~~d~~~L-~~fd----g~~---~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fl 284 (628)
T COG0296 215 DFKALVDAAHQAGIGVILDWVP--NHFPPDGNYL-ARFD----GTF---LYEHEDPRRGEHTDWGTAIFNYGRNEVRNFL 284 (628)
T ss_pred HHHHHHHHHHHcCCEEEEEecC--CcCCCCcchh-hhcC----Ccc---ccccCCcccccCCCcccchhccCcHHHHHHH
Confidence 4556678899999999999632 2334444332 1121 111 000123345568999999998732221222
Q ss_pred ----HHHHHHHHHHhhhcCceeeccccccc
Q 007886 364 ----SWWIHRIRRARDLYDEFRIDHFRGFA 389 (586)
Q Consensus 364 ----~ww~~rlr~~~~~~g~lRIDH~~Gf~ 389 (586)
.-|.+.. |+|+||+|=|-.+.
T Consensus 285 l~nal~Wl~~y-----HiDGlRvDAV~sml 309 (628)
T COG0296 285 LANALYWLEEY-----HIDGLRVDAVASML 309 (628)
T ss_pred HHHHHHHHHHh-----CCcceeeehhhhhh
Confidence 2233322 68999999887754
No 67
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.30 E-value=1.3e+02 Score=31.62 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHh--ccccccccccCCCCceeecCCCCCCCccccCCCCC--CCCh
Q 007886 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVW--ANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSP--LYDW 355 (586)
Q Consensus 280 w~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvW--a~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P--~y~w 355 (586)
+.-.+|++++.+||+++||.||-.+-+ |+=+..| +.|++-+... . |..|+.. .+|+
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~---PGH~~a~~~~~p~l~~~~~-------~----------~~~~~~~~~~l~~ 127 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDM---PGHSTAFVKSFPKLLTECY-------A----------GLKLRDVFDPLDP 127 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccc---hHHHHHHHHhCHHhccCcc-------c----------cCCCCCCCCccCC
Confidence 446789999999999999999876664 2333334 3566443221 1 2222221 3444
Q ss_pred HHHHHhchHHHHHHHHHHhhhcC
Q 007886 356 KAMEKDGFSWWIHRIRRARDLYD 378 (586)
Q Consensus 356 ~~l~~~gy~ww~~rlr~~~~~~g 378 (586)
. ....|+.-++.|+.++..|.
T Consensus 128 ~--~~~t~~fl~~l~~e~~~lf~ 148 (303)
T cd02742 128 T--LPKGYDFLDDLFGEIAELFP 148 (303)
T ss_pred C--CccHHHHHHHHHHHHHHhCC
Confidence 3 34578999999999999885
No 68
>smart00642 Aamy Alpha-amylase domain.
Probab=29.19 E-value=57 Score=31.37 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCeEEeeccc
Q 007886 284 RQWQKVRNYAQMKGISIMGDMPI 306 (586)
Q Consensus 284 ~Ql~~~~~~A~~~GI~L~gDLpi 306 (586)
++++++.+.|+++||+||-|+.+
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 70 EDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
Confidence 67889999999999999999985
No 69
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=28.62 E-value=95 Score=37.59 Aligned_cols=56 Identities=20% Similarity=0.126 Sum_probs=43.6
Q ss_pred CccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 105 IGDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 105 IGDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
-|+|.+. .+.++.+++.|.+.+.++|+.... +.....|.+..=+.+||-|=..+++
T Consensus 12 ~~tf~~~-~~~L~YL~~LGv~~V~lsPi~~a~---~gs~hGYdv~D~~~idp~lGt~edf 67 (825)
T TIGR02401 12 GFTFDDA-AALLPYLKSLGVSHLYLSPILTAV---PGSTHGYDVVDHSEINPELGGEEGL 67 (825)
T ss_pred CCCHHHH-HHhhHHHHHcCCCEEEeCcCccCC---CCCCCCCCCCCCCCcCCCCCCHHHH
Confidence 3899996 489999999999999999997642 2334678888878888877555544
No 70
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.39 E-value=1.2e+02 Score=32.56 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCeEEeeccccccCChhh---------HhccccccccccCCCCcee------ecCCCCCCCccccCCCCC
Q 007886 287 QKVRNYAQMKGISIMGDMPIYVGYHSAD---------VWANKKHFLLNRRGFPLEV------SGVPPDAFSETGQLWGSP 351 (586)
Q Consensus 287 ~~~~~~A~~~GI~L~gDLpigV~~dsaD---------vWa~~~~F~l~~~g~p~~~------~GaPPD~Fs~~GQ~WG~P 351 (586)
+++-+..+++|++++.=+=-+|+.++.. .=...++|..+.+|.|... .++-||.+|
T Consensus 88 ~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftn--------- 158 (340)
T cd06597 88 KGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTN--------- 158 (340)
T ss_pred HHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCC---------
Confidence 3444556678988766444444443210 1124466777766654221 124455554
Q ss_pred CCChHHHHHhchHHHHHHHHHHhhh
Q 007886 352 LYDWKAMEKDGFSWWIHRIRRARDL 376 (586)
Q Consensus 352 ~y~w~~l~~~gy~ww~~rlr~~~~~ 376 (586)
|+ ..+||.++++..++.
T Consensus 159 ---p~-----a~~Ww~~~~~~~~~~ 175 (340)
T cd06597 159 ---PE-----AAQWWMEKRRYLVDE 175 (340)
T ss_pred ---HH-----HHHHHHHHHHHHHHh
Confidence 33 346999999988754
No 71
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=26.82 E-value=1e+02 Score=37.77 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCChHHHHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHHHHHHHHcCCCcEEEc-
Q 007886 352 LYDWKAMEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSVGNINIIAE- 430 (586)
Q Consensus 352 ~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~ale~~~~~~~vIgE- 430 (586)
||=|+.| ++-+..+.+.|+++|||.--+ -|-.-. |-|+++-.+-.+++-||||
T Consensus 511 PyLWq~M--------~kY~e~tAriFdG~RlDNcHs------TPlHVa------------EylLd~ARk~nPnlYVvAEL 564 (1521)
T KOG3625|consen 511 PYLWQHM--------KKYTEITARIFDGVRLDNCHS------TPLHVA------------EYLLDAARKLNPNLYVVAEL 564 (1521)
T ss_pred hHHHHHH--------HHHHHHHHHHhcceeeccCCC------CchhHH------------HHHHHHHHhcCCCeEEEeee
Q ss_pred -------------ccCCCCHHHHHHHHHhCCCCeEEEEeeecCCC------CCCCCCCCCCCCcEEecCCCchhh
Q 007886 431 -------------DLGVITEDVVQLRKSIGAPGMAVLQFGFGSDS------KNPHLPHNHERNQVVYTGTHDNDT 486 (586)
Q Consensus 431 -------------DLG~vp~~V~~~l~~~gi~G~~Vl~Fe~~~~~------~~~~~p~~~~~~sva~~~THD~~T 486 (586)
-||+ ..=+|+.|....-.---=|-...++.+ ....+-..-..+++-.--|||||+
T Consensus 565 FtgSe~~DnvFVnRLGI-sSLIREAmsAwdshEqgRLVyryGG~pVGsfk~ns~R~~~~siaHaLFmD~tHDN~s 638 (1521)
T KOG3625|consen 565 FTGSEDLDNVFVNRLGI-SSLIREAMSAWDSHEQGRLVYRYGGEPVGSFKQNSLRPLMPSIAHALFMDITHDNES 638 (1521)
T ss_pred ccCCccchhhhhhhhhH-HHHHHHHHHhhchhhhceeeeeeCCeecccccccccccccCccchhhheeccCCCCC
No 72
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=24.94 E-value=79 Score=37.45 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCccchHHHHH-HHHHHHHcCCCeeeeccCCCCCCCCC------CCCCCCCcccccccccccc
Q 007886 104 GIGDFGAEAFR-FIDWLHQAGCSVWQVLPLVPPGRKAN------EEGSPYSGQDANCGNTLLI 159 (586)
Q Consensus 104 GIGDfgdla~~-~~d~~a~~G~~~~qilPL~~~~~~~~------~~~SPY~p~Sr~alNPlyI 159 (586)
..|+|..++.. .++.+++.|.+.|+|+|++....... ...--|.|.+=|+.+|-|-
T Consensus 177 ~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~ 239 (688)
T TIGR02100 177 LRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYL 239 (688)
T ss_pred cccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhc
Confidence 35999887632 58999999999999999987521100 0123588888888888884
No 73
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=24.75 E-value=2e+02 Score=30.53 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=45.6
Q ss_pred HHHHHHcCCeEEeeccccccCCh--hhHhccccccccccCCCCcee----ecCCCCCCCccccCCCCCCCChHHHHHhch
Q 007886 290 RNYAQMKGISIMGDMPIYVGYHS--ADVWANKKHFLLNRRGFPLEV----SGVPPDAFSETGQLWGSPLYDWKAMEKDGF 363 (586)
Q Consensus 290 ~~~A~~~GI~L~gDLpigV~~ds--aDvWa~~~~F~l~~~g~p~~~----~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy 363 (586)
.+..+++||+++.-+=-+|+.++ .+.-.....|..+.+|.+... .++=||.+| | +..
T Consensus 72 i~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftn------------p-----~a~ 134 (319)
T cd06591 72 VRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATN------------P-----EAR 134 (319)
T ss_pred HHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCC------------H-----HHH
Confidence 34456799988776644576655 233445566666544432110 012233332 3 456
Q ss_pred HHHHHHHHHHhhhcCceeeccccccceeeEEeCCCC
Q 007886 364 SWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAK 399 (586)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ 399 (586)
+||.+++++.+.- +|. .-||+..++.
T Consensus 135 ~w~~~~~~~~~~~---------~Gv-dg~w~D~~Ep 160 (319)
T cd06591 135 EYYWKQLKKNYYD---------KGV-DAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHhhc---------CCC-cEEEecCCCC
Confidence 8999988876542 344 4566776654
No 74
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=23.88 E-value=1.8e+02 Score=34.78 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhcCc-eeeccc
Q 007886 364 SWWIHRIRRARDLYDE-FRIDHF 385 (586)
Q Consensus 364 ~ww~~rlr~~~~~~g~-lRIDH~ 385 (586)
+-|.+..-..++..|. .||||=
T Consensus 178 ~~wa~~~N~~l~~~g~~~rid~r 200 (744)
T TIGR02768 178 EQWAELANEHLAEAGLDLRIDHR 200 (744)
T ss_pred HHHHHHHHHHHHHcCCCceEccc
Confidence 4578888888988886 899996
No 75
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.64 E-value=1.9e+02 Score=30.48 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhcc-ccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHH
Q 007886 282 FQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWAN-KKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEK 360 (586)
Q Consensus 282 ~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~-~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~ 360 (586)
-.+|++++.+||+++||.|+--+-. ++=++.|.. ++.-.+. ..+.||+.+ ++. ..
T Consensus 58 T~~ei~ei~~yA~~~gI~vIPeid~---pGH~~~~l~~~~~~~l~-------~~~~~~~~l------------~~~--~~ 113 (301)
T cd06565 58 TKEEIREIDDYAAELGIEVIPLIQT---LGHLEFILKHPEFRHLR-------EVDDPPQTL------------CPG--EP 113 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCC---HHHHHHHHhCccccccc-------ccCCCCCcc------------CCC--Ch
Confidence 5688999999999999999988775 333444543 3222221 122233333 332 24
Q ss_pred hchHHHHHHHHHHhhhcCc
Q 007886 361 DGFSWWIHRIRRARDLYDE 379 (586)
Q Consensus 361 ~gy~ww~~rlr~~~~~~g~ 379 (586)
.-|+.-+++++..+..|..
T Consensus 114 ~t~~fi~~li~ev~~~f~s 132 (301)
T cd06565 114 KTYDFIEEMIRQVLELHPS 132 (301)
T ss_pred hHHHHHHHHHHHHHHhCCC
Confidence 6788999999999999874
No 76
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.59 E-value=1.8e+02 Score=31.09 Aligned_cols=102 Identities=19% Similarity=0.362 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEeeccccccCChhhHhccccccccccCCCCceeecCCCCCCCccccCCCC--CCCChHH
Q 007886 280 FLFQRQWQKVRNYAQMKGISIMGDMPIYVGYHSADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGS--PLYDWKA 357 (586)
Q Consensus 280 w~~~~Ql~~~~~~A~~~GI~L~gDLpigV~~dsaDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~--P~y~w~~ 357 (586)
+.-.+|++++.+||+++||.||-.+-+=-| -.+=..+.|++-+. ++.+.. -+.||. +.+|+..
T Consensus 64 ~yT~~di~elv~yA~~rgI~vIPEId~PGH-~~a~~~~ypel~~~-------------~~~~~~-~~~~~~~~~~l~~~~ 128 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVVPEIDVPGH-ASAIAVAYPELASG-------------PGPYVI-ERGWGVFEPLLDPTN 128 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeecCccc-hHHHHHhCHHhccC-------------CCcccc-ccccccCCCccCCCC
Confidence 457889999999999999999876653222 22222335554322 121111 133443 3455543
Q ss_pred HHHhchHHHHHHHHHHhhhcCceeeccccccceeeEEeCCCCCCCCCceeeCC
Q 007886 358 MEKDGFSWWIHRIRRARDLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGP 410 (586)
Q Consensus 358 l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p 410 (586)
..-|+.-.+.+..++..|.. .++-|=.++ ...+.|-..|
T Consensus 129 --p~t~~f~~~l~~E~~~lF~~----------~~iHiGgDE--~~~~~W~~~p 167 (311)
T cd06570 129 --EETYTFLDNLFGEMAELFPD----------EYFHIGGDE--VDPKQWNENP 167 (311)
T ss_pred --hhHHHHHHHHHHHHHHhCCC----------CceEeeccC--CCCCcccCCH
Confidence 45788999999999988742 455554343 3456677665
No 77
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=23.51 E-value=75 Score=34.96 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCeEEeeccccccCChh-----hHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHH
Q 007886 286 WQKVRNYAQMKGISIMGDMPIYVGYHSA-----DVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEK 360 (586)
Q Consensus 286 l~~~~~~A~~~GI~L~gDLpigV~~dsa-----DvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~ 360 (586)
.+++.+..+++|+.++.-+--+|..++. +-....+.|..+.+|.| -.|+.|+.-..-.+--..
T Consensus 85 ~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~------------~~~~~w~g~~~~~Dftnp 152 (441)
T PF01055_consen 85 PKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSP------------YIGRVWPGKGGFIDFTNP 152 (441)
T ss_dssp HHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-------------EEEETTEEEEEB-TTSH
T ss_pred hHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCc------------ccccccCCcccccCCCCh
Confidence 4455667789999888877777777754 44445566665544432 235555521211222223
Q ss_pred hchHHHHHHHHHHhhhc
Q 007886 361 DGFSWWIHRIRRARDLY 377 (586)
Q Consensus 361 ~gy~ww~~rlr~~~~~~ 377 (586)
+..+||.++++..+..+
T Consensus 153 ~a~~w~~~~~~~~~~~~ 169 (441)
T PF01055_consen 153 EARDWWKEQLKELLDDY 169 (441)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47799999999988873
No 78
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=23.37 E-value=1.7e+02 Score=32.88 Aligned_cols=96 Identities=13% Similarity=0.222 Sum_probs=54.3
Q ss_pred hhcCceeeccccccceeeEEeCCCCCCCCCceeeCCchhHHHHHHHHc-CCCcEEEcccCCCCHHHHHHHHHhCCCCeEE
Q 007886 375 DLYDEFRIDHFRGFAGFWAVPSEAKVAMDGRWKVGPGKSLFDAIFRSV-GNINIIAEDLGVITEDVVQLRKSIGAPGMAV 453 (586)
Q Consensus 375 ~~~g~lRIDH~~Gf~r~W~IP~g~~ta~~G~yv~~p~~~l~~ale~~~-~~~~vIgEDLG~vp~~V~~~l~~~gi~G~~V 453 (586)
..+|++|||.+..+..- ++ .++..++.+.. +++.+|||-.+.-++.+.......+. ++.+
T Consensus 225 ~giDGfRlDavk~v~~~--------------f~----~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~-~~~~ 285 (479)
T PRK09441 225 TGFDGFRLDAVKHIDAW--------------FI----KEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEG-KTDL 285 (479)
T ss_pred cCCCEEEEhhhcCCCHH--------------HH----HHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCC-CceE
Confidence 47899999998886321 11 23445665544 47889999887666666666554331 2234
Q ss_pred EEee--------ecCCC--C--CC---CCCCCCCCCcEEecCCCchhhHHH
Q 007886 454 LQFG--------FGSDS--K--NP---HLPHNHERNQVVYTGTHDNDTIRS 489 (586)
Q Consensus 454 l~Fe--------~~~~~--~--~~---~~p~~~~~~sva~~~THD~~Tl~G 489 (586)
+=|. +.... + .. ......+...+..+.+||++-+..
T Consensus 286 ~Df~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~FldNHD~~R~~~ 336 (479)
T PRK09441 286 FDVPLHYNFHEASKQGRDYDMRNIFDGTLVEADPFHAVTFVDNHDTQPGQA 336 (479)
T ss_pred ecHHHHHHHHHHHhcCCccchHhhhCcchhhcCcccceeeeccccCCCccc
Confidence 4332 11100 0 00 011122345678999999998654
No 79
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=21.32 E-value=2.2e+02 Score=29.85 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCeEEeeccccccCChhhHhc---cccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchH
Q 007886 288 KVRNYAQMKGISIMGDMPIYVGYHSADVWA---NKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFS 364 (586)
Q Consensus 288 ~~~~~A~~~GI~L~gDLpigV~~dsaDvWa---~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ 364 (586)
++.+..+++||+++--+--+|..+|. +.. ..+.|..+.+|.+. .+..|.-...-++-...+..+
T Consensus 70 ~~i~~l~~~G~~~~~~~~P~i~~~~~-~~~e~~~~g~~v~~~~g~~~------------~~~~w~g~~~~~Dftnp~a~~ 136 (308)
T cd06593 70 GMLSRLKEKGFKVCLWINPYIAQKSP-LFKEAAEKGYLVKKPDGSVW------------QWDLWQPGMGIIDFTNPDACK 136 (308)
T ss_pred HHHHHHHHCCCeEEEEecCCCCCCch-hHHHHHHCCeEEECCCCCee------------eecccCCCcccccCCCHHHHH
Confidence 44455667898877666667777663 222 24556555444321 222343222333333444558
Q ss_pred HHHHHHHHHhh
Q 007886 365 WWIHRIRRARD 375 (586)
Q Consensus 365 ww~~rlr~~~~ 375 (586)
||.++++.+.+
T Consensus 137 w~~~~~~~~~~ 147 (308)
T cd06593 137 WYKDKLKPLLD 147 (308)
T ss_pred HHHHHHHHHHH
Confidence 99999987553
No 80
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=21.07 E-value=1.6e+02 Score=35.94 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhh
Q 007886 106 GDFGAEAFRFIDWLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEEL 164 (586)
Q Consensus 106 GDfgdla~~~~d~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l 164 (586)
++|.+. .+.++.+++.|.+.|.++|+.... +.....|.+..=..+||-|=+.+++
T Consensus 17 ~tf~~~-~~~l~YL~~LGis~IyLsPi~~a~---~gs~hGYdv~D~~~idp~lGt~e~f 71 (879)
T PRK14511 17 FTFDDA-AELVPYFADLGVSHLYLSPILAAR---PGSTHGYDVVDHTRINPELGGEEGL 71 (879)
T ss_pred CCHHHH-HHHhHHHHHcCCCEEEECcCccCC---CCCCCCCCcCCCCCcCCCCCCHHHH
Confidence 778886 488999999999999999997652 2334578888777888877665555
No 81
>PRK13840 sucrose phosphorylase; Provisional
Probab=21.07 E-value=1.7e+02 Score=33.41 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCCCCCccchHHHHHHHH-HHHHcCCCeeeeccCCCCCCCCCCCCCCCCcccccccccccccchhhhh
Q 007886 100 RGPYGIGDFGAEAFRFID-WLHQAGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLEELVK 166 (586)
Q Consensus 100 rs~~GIGDfgdla~~~~d-~~a~~G~~~~qilPL~~~~~~~~~~~SPY~p~Sr~alNPlyI~le~l~e 166 (586)
.-+.|.|||..+. +++| .++.. .+.+-|+|+..+.+ ..+-=|.++.=+.+||-|=+.+++.+
T Consensus 11 ~Ds~~~GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp---~sD~GYdv~DY~~VDP~fGt~eDf~~ 73 (495)
T PRK13840 11 ADRLGDGGLKSLT-ALLDGRLDGL-FGGVHILPFFYPID---GADAGFDPIDHTKVDPRLGDWDDVKA 73 (495)
T ss_pred ccCCCCCCHhHHH-HHHHHHHHHH-hCeEEECCCccCCC---CCCCCCCCcChhhcCcccCCHHHHHH
Confidence 3456669999985 7889 59988 89999999984322 23445888888889999888777653
No 82
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=20.94 E-value=40 Score=38.25 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhcCceeeccccc
Q 007886 364 SWWIHRIRRARDLYDEFRIDHFRG 387 (586)
Q Consensus 364 ~ww~~rlr~~~~~~g~lRIDH~~G 387 (586)
+-.-+.|...++--.++||||++|
T Consensus 155 ~~Ln~~l~~~f~E~qIyRIDHYLG 178 (482)
T PRK12853 155 RALNATLAKVFDEDQIYRIDHFLG 178 (482)
T ss_pred HHHHHHHHhhCCHHHeeccCcccc
Confidence 445567778888888999999998
No 83
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.82 E-value=1.8e+02 Score=30.75 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=40.9
Q ss_pred HHHHHHcCCeEEeeccccccCCh--hhHhccccccccccCCCCceeecCCCCCCCccccCCCCCCCChHHHHHhchHHHH
Q 007886 290 RNYAQMKGISIMGDMPIYVGYHS--ADVWANKKHFLLNRRGFPLEVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWI 367 (586)
Q Consensus 290 ~~~A~~~GI~L~gDLpigV~~ds--aDvWa~~~~F~l~~~g~p~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~ 367 (586)
.+..+++|++++.-+--+|..++ .+--....+|..+.+| -+| ..|+-|+-...-++-...+..+||.
T Consensus 79 i~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g-------~~~----~~~~~w~g~~~~~Dftnp~a~~ww~ 147 (317)
T cd06599 79 VAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDG-------REP----SIGQFWGGVGSFVDFTNPEGREWWK 147 (317)
T ss_pred HHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCC-------CCc----ceecccCCCeEeecCCChHHHHHHH
Confidence 34456689988887777777654 1222233444443222 222 2355554332223333334568999
Q ss_pred HHHHHHhhh
Q 007886 368 HRIRRARDL 376 (586)
Q Consensus 368 ~rlr~~~~~ 376 (586)
++++..+.-
T Consensus 148 ~~~~~~~~~ 156 (317)
T cd06599 148 EGVKEALLD 156 (317)
T ss_pred HHHHHHHhc
Confidence 999777653
No 84
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=20.39 E-value=1.1e+02 Score=38.17 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=20.4
Q ss_pred CchhhH-hHHHHHHHhhcCCCCCCCCchhhhcCCHHHHHHHHHhcHhHHHHHHHHH
Q 007886 225 SSWLED-AAYFAAIDDSLNTFSWYLWPESLKNRHLAALEEIYQSKKDFIDLFIAQQ 279 (586)
Q Consensus 225 ~~wL~~-yA~f~aL~~~~~~~~W~~Wp~~~~~~~~~av~~~~~~~~~~i~f~~~lQ 279 (586)
++||.. ||.||+= ...||+.+...++.+=.|..|+|
T Consensus 479 ae~L~~~~a~FCs~-------------------q~~ALe~~K~k~~KD~rFq~fvk 515 (1167)
T KOG3520|consen 479 AERLKKTYAQFCSR-------------------QSIALEQLKTKQAKDKRFQAFVK 515 (1167)
T ss_pred HHHHHHHHHHHhhc-------------------cHHHHHHHHHHHhccHHHHHHHH
Confidence 567765 7777751 23455555555555555555554
Done!