BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007887
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 176/569 (30%), Positives = 275/569 (48%), Gaps = 38/569 (6%)
Query: 24 DVKEAFNKYAEGGTHMTAEQLRRFLLEVQGDDGGSISDAEKVVDQVLKTRHHLAKFTRHT 83
++ AF + A ++ E+L FL Q ++ + A ++++ + AK R
Sbjct: 79 EIDRAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPS--ETAKAQRQ- 135
Query: 84 LTLDDFHHYLFSSDLNP-PINYDQVHQDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPI 142
+T D F YL S+D N + + +V+QDM PLSHY + + HN+YL +QL+ S
Sbjct: 136 MTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAY 195
Query: 143 IKALKRGVRVVELDIWPNSTKDDVHVLHGRTLTTPVELMKCLKSIKEHAFSASPYPVVIT 202
I+AL +G R +ELD W ++ + + HG T T+ + L++I+++AF ASPYPV+++
Sbjct: 196 IRALCKGCRCLELDCWDGPNQEPI-IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILS 254
Query: 203 LEDHLTPHLQAKVAKMLAETFGDMLF-VPQCECLQEFPSPEELKYKIIISTKPPKEYLKA 261
LE+H + Q +A+ L G +L P PSPE+LK KI++ K L A
Sbjct: 255 LENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGLLPA 314
Query: 262 ESKDGTR----SNSVKARDSDDDEWGKEPQDLTADQEDETKSDSDISDENEAYDNERPLE 317
++G+ S+ V+A + +D+ + Q +ED+ K ++SD
Sbjct: 315 GGENGSEATDVSDEVEAAEMEDEAVRSQVQH--KPKEDKLKLVPELSD------------ 360
Query: 318 AADYKRLIAIHAGKPKGGLKDVLKVEPDKVRRLSLSEQTLEKAAESHGTDLVRFTQKNIL 377
+I GG S SE + + G VR +
Sbjct: 361 ------MIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLS 414
Query: 378 RIYPKGTRFTSSNYKPLVGWMHGTQMVAFNMQGYGRAMWLMHGMFRSNGGCGYVKKPDLQ 437
RIYP G R SSNY P+ W G Q+VA N Q G M + G F+ NGGCGYV KP
Sbjct: 415 RIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAF- 473
Query: 438 MNVGPDGQVFNPKEIL--PVKKTLKIKVYMGDGWHLDFKQTHFDLYSPPDFYCKVGIAGV 495
+ FN + + P + +++V + G L + + + S D V I GV
Sbjct: 474 --LRDPNTTFNSRALTQGPWWRPERLRVRIISGQQL--PKVNKNKNSIVDPKVIVEIHGV 529
Query: 496 PADQIMKKTKPKEDN-WTPVWEQEFTFPLTVPELALLRIEVHEYDMSEKDDFAGQTCLPV 554
D ++T +N + P W+ EF F +TVP+LAL+R V +YD S K+DF GQ+ +P
Sbjct: 530 GRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW 589
Query: 555 SELKPGIRAVPLSDRKGEMLNSVRLLMRF 583
+ LK G R V L + G+ S L ++
Sbjct: 590 NSLKQGYRHVHLLSKNGDQHPSATLFVKI 618
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 176/569 (30%), Positives = 275/569 (48%), Gaps = 38/569 (6%)
Query: 24 DVKEAFNKYAEGGTHMTAEQLRRFLLEVQGDDGGSISDAEKVVDQVLKTRHHLAKFTRHT 83
++ AF + A ++ E+L FL Q ++ + A ++++ + AK R
Sbjct: 81 EIDRAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPS--ETAKAQRQ- 137
Query: 84 LTLDDFHHYLFSSDLNP-PINYDQVHQDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPI 142
+T D F YL S+D N + + +V+QDM PLSHY + + HN+YL +QL+ S
Sbjct: 138 MTKDGFLMYLLSADGNAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAY 197
Query: 143 IKALKRGVRVVELDIWPNSTKDDVHVLHGRTLTTPVELMKCLKSIKEHAFSASPYPVVIT 202
I+AL +G R +ELD W ++ + + HG T T+ + L++I+++AF ASPYPV+++
Sbjct: 198 IRALCKGCRCLELDCWDGPNQEPI-IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILS 256
Query: 203 LEDHLTPHLQAKVAKMLAETFGDMLF-VPQCECLQEFPSPEELKYKIIISTKPPKEYLKA 261
LE+H + Q +A+ L G +L P PSPE+LK KI++ K L A
Sbjct: 257 LENHCSLEQQRVMARHLRAILGPILLDQPLDGVTTSLPSPEQLKGKILLKGKKLGGLLPA 316
Query: 262 ESKDGTR----SNSVKARDSDDDEWGKEPQDLTADQEDETKSDSDISDENEAYDNERPLE 317
++G+ S+ V+A + +D+ + Q +ED+ K ++SD
Sbjct: 317 GGENGSEATDVSDEVEAAEMEDEAVRSQVQH--KPKEDKLKLVPELSD------------ 362
Query: 318 AADYKRLIAIHAGKPKGGLKDVLKVEPDKVRRLSLSEQTLEKAAESHGTDLVRFTQKNIL 377
+I GG S SE + + G VR +
Sbjct: 363 ------MIIYCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLS 416
Query: 378 RIYPKGTRFTSSNYKPLVGWMHGTQMVAFNMQGYGRAMWLMHGMFRSNGGCGYVKKPDLQ 437
RIYP G R SSNY P+ W G Q+VA N Q G M + G F+ NGGCGYV KP
Sbjct: 417 RIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFL 476
Query: 438 MNVGPDGQVFNPKEIL--PVKKTLKIKVYMGDGWHLDFKQTHFDLYSPPDFYCKVGIAGV 495
+ FN + + P + +++V + G L + + + S D V I GV
Sbjct: 477 RD---PNTTFNSRALTQGPWWRPERLRVRIISGQQL--PKVNKNKNSIVDPKVIVEIHGV 531
Query: 496 PADQIMKKTKPKEDN-WTPVWEQEFTFPLTVPELALLRIEVHEYDMSEKDDFAGQTCLPV 554
D ++T +N + P W+ EF F +TVP+LAL+R V +YD S K+DF GQ+ +P
Sbjct: 532 GRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW 591
Query: 555 SELKPGIRAVPLSDRKGEMLNSVRLLMRF 583
+ LK G R V L + G+ S L ++
Sbjct: 592 NSLKQGYRHVHLLSKNGDQHPSATLFVKI 620
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 179/624 (28%), Positives = 268/624 (42%), Gaps = 127/624 (20%)
Query: 3 SYRMCVCFTRKFRVTEAGPPEDVKEAFNKY-AEGGTHMTAEQLRRFLLEVQGDDG-GSIS 60
S+ M +C P ++ E F Y A+ +MT E L +F+ + Q D S+
Sbjct: 210 SFLMSLC-----------PRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLL 258
Query: 61 DAEKVVDQV--LKTRHHLAKFT--RHTLTLDDFHHYLFSSDLNPPINYDQV--HQDMTAP 114
DQV L ++ + R L+ + +L + N + D++ H DMT P
Sbjct: 259 FPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVWFLCGPE-NSVLAQDKLLLHHDMTQP 317
Query: 115 LSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALKRGVRVVELDIWPNSTKDDVHVL-HGRT 173
L+HYFI + HN+YLT Q S S + L G R VELD W D+ ++ HG T
Sbjct: 318 LNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFT 377
Query: 174 LTTPVELMKCLKSIKEHAFSASPYPVVITLEDHL-TPHLQAKVAKMLAETFGDMLFVPQC 232
+TT + + +++I E AF SPYP++++ E+H+ +P QAK+A+ FGDML
Sbjct: 378 MTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCRTIFGDMLLT--- 434
Query: 233 ECLQEF--------PSPEELKYKIIISTKPPKEYLKAESKDGTRSNSVKARDSDDDEWGK 284
E L++F PSPE+L+ KI+I K K+ + ++D+ + G
Sbjct: 435 EPLEKFPLKPGVPLPSPEDLRGKILIKNK----------KNQFSGPTSSSKDTGGEAEGS 484
Query: 285 EPQDLTA--------------------------DQEDETKSDSDISDENEAYDNERPLEA 318
P A D+E+ K SD + LE
Sbjct: 485 SPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSD--------EGTAGLEV 536
Query: 319 ADYKRLIAIHAGKPKGGLKDVLKVEPDKVRRLSLSEQTLEKAAESHGTDL---------- 368
Y+ + ++ V ++P K S Q S T+L
Sbjct: 537 TAYEEMSSL-----------VNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKAS 585
Query: 369 ---VRFTQKNILRIYPKGTRFTSSNYKPLVGWMHGTQMVAFNMQGYGRAMWLMHGMFRSN 425
V + ++ + RIYPKGTR SSNY P + W G QMVA N Q M +F N
Sbjct: 586 VQFVDYNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFN 645
Query: 426 GGCGYVKKPDLQMNVGPDGQVFNPKEI----LPVKKTLKIKVYMGDGWHLDFKQTHFDLY 481
G GY+ K + PD Q FNP + + V TL I V G +T
Sbjct: 646 GQSGYLLKHEFMRR--PDKQ-FNPFSVDRIDVVVATTLSITVISGQFLSERSVRT----- 697
Query: 482 SPPDFYCKVGIAGVPAD---QIMKKTKPKEDNWTPVWEQE-FTF-PLTVPELALLRIEVH 536
Y +V + G+P D + K P ++ PVW++E F F + +PELA LR+ V
Sbjct: 698 -----YVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV- 751
Query: 537 EYDMSEKDDFAGQTCLPVSELKPG 560
M E + F G +P++ L G
Sbjct: 752 ---MEEGNKFLGHRIIPINALNSG 772
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 25/240 (10%)
Query: 33 AEGGTHMTAEQLRRFLLEVQGDDGGS--------ISDAEKVVDQVLKTRHHLAKFTRHTL 84
A+G ++T EQL F+ + Q D + S A ++++ + L R +
Sbjct: 234 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLE---RDQM 290
Query: 85 TLDDFHHYLFSSDLNP-PINYDQVHQDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPII 143
+++ F YL + P+ + DMT PLS YFI + HN+YLT QL+ S
Sbjct: 291 SMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYR 350
Query: 144 KALKRGVRVVELDIWPNS-TKDDVHVLHGRTLTTPVELMKCLKSIKEHAFSASPYPVVIT 202
+AL G R VELD+W +++ + HG T+TT V L L++I E AF SPYPV+++
Sbjct: 351 QALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILS 410
Query: 203 LEDHL-TPHLQAKVAKMLAETFGDMLFVPQCECLQEF--------PSPEELKYKIIISTK 253
E+H+ + QAK+A+ FGD L + E L ++ PSP++L +I++ K
Sbjct: 411 FENHVDSAKQQAKMAEYCRSIFGDALLI---EPLDKYPLAPGVPLPSPQDLMGRILVKNK 467
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 25/223 (11%)
Query: 367 DLVRFTQKNILRIYPKGTRFTSSNYKPLVGWMHGTQMVAFNMQGYGRAMWLMHGMFRSNG 426
+ V + ++ + RIYPKGTR SSNY P + W G Q+VA N Q AM L G+F NG
Sbjct: 634 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 693
Query: 427 GCGYVKKPDLQMNVGPDGQVFNP-KEILP---VKKTLKIKVYMGDGWHLDFKQTHFDLYS 482
GY+ KP+ PD + F+P E++ V L++KV G L ++
Sbjct: 694 RSGYLLKPEFMRR--PD-KSFDPFTEVIVDGIVANALRVKVI--SGQFLSDRKV------ 742
Query: 483 PPDFYCKVGIAGVPADQIMK-KTKPKEDN-WTPVWEQE-FTFP-LTVPELALLRIEVHEY 538
Y +V + G+P D K +T+ + N + PVW++E F FP + +P LA LRI E
Sbjct: 743 --GIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE- 799
Query: 539 DMSEKDDFAGQTCLPVSELKPGIRAVPLSDRKGEMLNSVRLLM 581
E F G LPVS ++ G V L + + L LL+
Sbjct: 800 ---EGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLI 839
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 25/240 (10%)
Query: 33 AEGGTHMTAEQLRRFLLEVQGDDGGS--------ISDAEKVVDQVLKTRHHLAKFTRHTL 84
A+G ++T EQL F+ + Q D + S A ++++ + L R +
Sbjct: 236 AKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFL---ERDQM 292
Query: 85 TLDDFHHYLFSSDLNP-PINYDQVHQDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPII 143
+++ F YL + P+ + DMT PLS YFI + HN+YLT QL+ S
Sbjct: 293 SMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYR 352
Query: 144 KALKRGVRVVELDIWPNS-TKDDVHVLHGRTLTTPVELMKCLKSIKEHAFSASPYPVVIT 202
+AL G R VELD+W +++ + HG T+TT V L L++I E AF SPYPV+++
Sbjct: 353 QALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILS 412
Query: 203 LEDHL-TPHLQAKVAKMLAETFGDMLFVPQCECLQEF--------PSPEELKYKIIISTK 253
E+H+ + QAK+A+ FGD L + E L ++ PSP++L +I++ K
Sbjct: 413 FENHVDSAKQQAKMAEYCRSIFGDALLI---EPLDKYPLAPGVPLPSPQDLMGRILVKNK 469
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 110/223 (49%), Gaps = 25/223 (11%)
Query: 367 DLVRFTQKNILRIYPKGTRFTSSNYKPLVGWMHGTQMVAFNMQGYGRAMWLMHGMFRSNG 426
+ V + ++ + RIYPKGTR SSNY P + W G Q+VA N Q AM L G+F NG
Sbjct: 636 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 695
Query: 427 GCGYVKKPDLQMNVGPDGQVFNP-KEILP---VKKTLKIKVYMGDGWHLDFKQTHFDLYS 482
GY+ KP+ PD + F+P E++ V L++KV G F
Sbjct: 696 RSGYLLKPEFMRR--PD-KSFDPFTEVIVDGIVANALRVKVISG----------QFLSDR 742
Query: 483 PPDFYCKVGIAGVPADQIMK-KTKPKEDN-WTPVWEQE-FTFP-LTVPELALLRIEVHEY 538
Y +V + G+P D K +T+ + N + PVW++E F FP + +P LA LRI E
Sbjct: 743 KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE- 801
Query: 539 DMSEKDDFAGQTCLPVSELKPGIRAVPLSDRKGEMLNSVRLLM 581
E F G LPVS ++ G V L + + L LL+
Sbjct: 802 ---EGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLI 841
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 20/208 (9%)
Query: 367 DLVRFTQKNILRIYPKGTRFTSSNYKPLVGWMHGTQMVAFNMQGYGRAMWLMHGMFRSNG 426
D V + +K I RIYPKGTR SSNY P + W G Q+VA N Q + AM + G+F NG
Sbjct: 559 DFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYNG 618
Query: 427 GCGYVKKPDLQMNVGPDGQVFNPKEI-LPVKKTLKIKVYMGDGWHLDFKQTHFDLYSPPD 485
GY+ KP+ + F + V T++IK+ L KQ
Sbjct: 619 CSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQ--FLSDKQI--------S 668
Query: 486 FYCKVGIAGVPADQIMKKTKPK--EDN-WTPVW-EQEFTF-PLTVPELALLRIEVHEYDM 540
Y +V + G+P D + KK K K E+N P + E+ F F + +P+LA++RI V E
Sbjct: 669 SYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE--- 725
Query: 541 SEKDDFAGQTCLPVSELKPGIRAVPLSD 568
E F G +P+ +KPG R VPL +
Sbjct: 726 -ENGKFIGHRVMPLDGIKPGYRHVPLRN 752
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Query: 367 DLVRFTQKNILRIYPKGTRFTSSNYKPLVGWMHGTQMVAFNMQGYGRAMWLMHGMFRSNG 426
D V + +K + RIYPKGTR SSNY P + W G Q+VA N Q + AM + G+F NG
Sbjct: 559 DFVDYNKKQLTRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDVAMCVNLGVFEYNG 618
Query: 427 GCGYVKKPDLQMNVGPDGQVFNPKEI-LPVKKTLKIKVYMGDGWHLDFKQTHFDLYSPPD 485
GY+ KP+ + F + V T++IK+ L KQ
Sbjct: 619 CSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQ--FLSDKQI--------S 668
Query: 486 FYCKVGIAGVPADQIMKKTKPKEDN---WTPVW-EQEFTF-PLTVPELALLRIEVHEYDM 540
Y +V + G+P D + KK K K N P + E F F + +P+LA++RI V+E
Sbjct: 669 SYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNENAFVFKKVVLPDLAVVRIIVNE--- 725
Query: 541 SEKDDFAGQTCLPVSELKPGIRAVPLSDRKGEML 574
+ F G +P+ +KPG R +PL + L
Sbjct: 726 -DGGKFIGHRLMPLDGIKPGYRHIPLRNESNRPL 758
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 485 DFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPEL-ALLRIEVHEYDMSEK 543
D Y K+ + P ++ +KTK P W + FTF L + L +E+ ++D + +
Sbjct: 40 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTR 99
Query: 544 DDFAGQTCLPVSEL 557
+DF G VSEL
Sbjct: 100 NDFXGSLSFGVSEL 113
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 485 DFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPEL-ALLRIEVHEYDMSEK 543
D Y K+ + P ++ +KTK P W + FTF L + L +E+ ++D + +
Sbjct: 39 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTR 98
Query: 544 DDFAGQTCLPVSEL 557
+DF G VSEL
Sbjct: 99 NDFMGSLSFGVSEL 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 485 DFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPEL-ALLRIEVHEYDMSEK 543
D Y K+ + P ++ +KTK P W + FTF L + L +E+ ++D + +
Sbjct: 38 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTR 97
Query: 544 DDFAGQTCLPVSEL 557
+DF G VSEL
Sbjct: 98 NDFMGSLSFGVSEL 111
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 485 DFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELA-LLRIEVHEYDMSEK 543
D Y K+ + P + +KT+ + PVW + F F L ++ L +EV ++D + +
Sbjct: 42 DPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSR 101
Query: 544 DDFAGQTCLPVSEL 557
+DF G VSEL
Sbjct: 102 NDFMGAMSFGVSEL 115
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 485 DFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPEL-ALLRIEVHEYDMSEK 543
D Y K+ + P + +KTK + + P W + F F L + L +E+ ++D++ +
Sbjct: 194 DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 253
Query: 544 DDFAGQTCLPVSEL-KPGIRA--VPLSDRKGEMLN 575
+DF G +SEL K G+ LS +GE N
Sbjct: 254 NDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFN 288
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 485 DFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPEL-ALLRIEVHEYDMSEK 543
D Y K+ + P + +KTK + + P W + F F L + L +E+ ++D++ +
Sbjct: 53 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 112
Query: 544 DDFAGQTCLPVSEL-KPGIRAV--PLSDRKGEMLN 575
+DF G +SEL K G+ LS +GE N
Sbjct: 113 NDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFN 147
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 457 KTLKIKVYMGDGWHLDFKQTHFDLYSPPDFYCKVG--IAGVPADQIMKKTKPKEDNWTPV 514
+ L++KV G +D + D++ D Y K+ +A + + +TK + P
Sbjct: 21 RILRVKVVSG----IDLAKK--DIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPK 74
Query: 515 WEQEFTFPLTVPELALLRIEVHEYDMSEKDDFAGQTCLPVSEL 557
W +EF F + P L EV + + +DDF GQ +P+S L
Sbjct: 75 WNEEFYFRVN-PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 478 FDLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEV 535
D+ D Y KV + +P + +TK PV+ ++FTF + ELA L + V
Sbjct: 34 LDMGGTSDPYVKVFL--LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAV 91
Query: 536 HEYDMSEKDDFAGQTCLPVSELKPG 560
+++D K D G+ +P++ + G
Sbjct: 92 YDFDRFSKHDIIGEFKVPMNTVDFG 116
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 479 DLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELALLRIEVHEY 538
D+ PD Y ++ I+ P + K+T+ ++ PVW + F F L + +L I + +
Sbjct: 22 DMLDTPDPYVELFISTTPDSR--KRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 79
Query: 539 DMSEKDDFAGQTCLPVSELKPG 560
+ D+ G VS +K G
Sbjct: 80 NYV-MDETLGTATFTVSSMKVG 100
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 479 DLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELALLRIEVHEY 538
D+ PD Y ++ I+ P + K+T+ ++ PVW + F F L + +L I + +
Sbjct: 37 DMLDTPDPYVELFISTTPDSR--KRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94
Query: 539 DMSEKDDFAGQTCLPVSELKPG 560
+ D+ G VS +K G
Sbjct: 95 NYV-MDETLGTATFTVSSMKVG 115
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 479 DLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELALLRIEVHEY 538
D+ PD Y ++ I+ P + K+T+ ++ PVW + F F L + +L I + +
Sbjct: 37 DMLDTPDPYVELFISTTPDSR--KRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94
Query: 539 DMSEKDDFAGQTCLPVSELKPG 560
+ D+ G VS +K G
Sbjct: 95 NYV-MDETLGTATFTVSSMKVG 115
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 478 FDLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEV 535
D+ D Y KV + +P + +TK PV+ ++FTF + EL L + V
Sbjct: 49 LDMGGTSDPYVKVFL--LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAV 106
Query: 536 HEYDMSEKDDFAGQTCLPVSELKPG 560
+++D K D G+ +P++ + G
Sbjct: 107 YDFDRFSKHDIIGEFKVPMNTVDFG 131
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 479 DLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEVH 536
D+ D Y KV + +P + +TK PV+ ++FTF + EL L + V+
Sbjct: 58 DMGGTSDPYVKVFL--LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 115
Query: 537 EYDMSEKDDFAGQTCLPVSELKPG 560
++D K D G+ +P++ + G
Sbjct: 116 DFDRFSKHDIIGEFKVPMNTVDFG 139
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 479 DLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEVH 536
D+ D Y KV + +P + +TK PV+ ++FTF + EL L + V+
Sbjct: 33 DMGGTSDPYVKVFL--LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 90
Query: 537 EYDMSEKDDFAGQTCLPVSELKPG 560
++D K D G+ +P++ + G
Sbjct: 91 DFDRFSKHDIIGEFKVPMNTVDFG 114
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 478 FDLYSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEV 535
D+ D Y KV + +P + +TK PV+ ++FTF + EL L + V
Sbjct: 49 LDMGGTSDPYVKVFL--LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAV 106
Query: 536 HEYDMSEKDDFAGQTCLPVSELKPG 560
+++D K D G+ +P++ + G
Sbjct: 107 YDFDRFSKHDIIGEFKVPMNTVDFG 131
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 510 NWTPVWEQEFTFPLTVPELALLRIEVHEYDMSEKDDFAGQTCLPVSELKPG 560
N P W + FTFP+ +L + V + D + DF G+ +P+ ++ G
Sbjct: 55 NLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 457 KTLKIKVYMGDGWHLDFKQTHFDLYSPPDFYCKVGIAGVPADQIMK--KTKPKEDNWTPV 514
+ +++KV G G D+ D Y +V + P I+ +TK + + P
Sbjct: 8 RVVRVKVIAGIGL------AKKDILGASDPYVRVTLYD-PMSGILTSVQTKTIKKSLNPK 60
Query: 515 WEQEFTFPLTVPELALLRIEVHEYDMSEKDDFAGQTCLPVSEL 557
W +E F +P+ + EV + + +DDF GQ +P+ L
Sbjct: 61 WNEEILF-RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 495 VPADQIMKKTKPKEDNWTPVWEQEFTFPL----------TVPELALLRIEVHEYDMSEKD 544
V + K+TK N PVWE+ F F + E ++ V + E D
Sbjct: 44 VQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESD 103
Query: 545 DFAGQTCLPVSEL 557
DF GQT + V L
Sbjct: 104 DFLGQTIIEVRTL 116
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 485 DFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTF---PLT-VPELALLRIEVHEYDM 540
D Y K+ I +P + KT+ P +++ FTF P T + ELAL + +D
Sbjct: 45 DPYIKMTI--LPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELAL-HFTILSFDR 101
Query: 541 SEKDDFAGQTCLPVS--ELKPG 560
+DD G+ +P+S EL G
Sbjct: 102 FSRDDIIGEVLIPLSGIELSEG 123
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 457 KTLKIKVYMGDGWHLDFKQTHFDLYSPPDFYCKVGIAGVPADQIMK--KTKPKEDNWTPV 514
+ ++++V G G D+ D Y +V + P + ++ +TK + + P
Sbjct: 20 RIVRVRVIAGIGL------AKKDILGASDPYVRVTLYD-PMNGVLTSVQTKTIKKSLNPK 72
Query: 515 WEQEFTFPLTVPELALLRIEVHEYDMSEKDDFAGQTCLPVSEL 557
W +E F + P+ L EV + + +DDF GQ +P+ L
Sbjct: 73 WNEEILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 490 VGIAGVPADQIMKKTKPKEDNWTPVWEQEFTF---PLTVPELALLRIEVHEYDMSEKDDF 546
V I +P + +TK K N P W + F F P +L ++V +YD ++D
Sbjct: 51 VKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDP 110
Query: 547 AGQTCLPVSEL 557
G+ +P++++
Sbjct: 111 IGEVSIPLNKV 121
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 503 KTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEVHEYDMSEKDDFAGQTCLPVS 555
KT+ K+ P + +EF + + +LA L I V +YD+ + +D+ G L +S
Sbjct: 77 KTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 503 KTKPKEDNWTPVWEQEFTFPLTVPELAL--LRIEVHEYDMSEKDDFAGQTCL 552
+TK P++ + F F + + ELA L V+++D + D GQ L
Sbjct: 59 QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVL 110
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 503 KTKPKEDNWTPVWEQEFTFPLTVPELAL--LRIEVHEYDMSEKDDFAGQTCL 552
+TK P++ + F F + + ELA L V+++D + D GQ L
Sbjct: 58 QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVL 109
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 503 KTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEVHEYDMSEKDDFAGQTCLPVS 555
KT+ K+ P + +EF + + +LA L I V +YD+ + +D+ G L +S
Sbjct: 55 KTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 109
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 481 YSPPDFYCKVGIAGVPADQIMKKTKPKEDNWTPVWEQEFTFPLTVPELA--LLRIEVHEY 538
YS P + K+ + + KT+ K+ P + +EF + + +LA L I V +Y
Sbjct: 57 YSDP--FVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 114
Query: 539 DMSEKDDFAGQTCLPVS 555
D+ + +D+ G L +S
Sbjct: 115 DIGKSNDYIGGCQLGIS 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,260,758
Number of Sequences: 62578
Number of extensions: 874219
Number of successful extensions: 2029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1962
Number of HSP's gapped (non-prelim): 60
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)