BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007889
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 281 bits (718), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 259/507 (51%), Gaps = 23/507 (4%)
Query: 71 DIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFS 130
+++ D AKKL+A I + L +ID VQRLG+ Y F+ +I + L R
Sbjct: 40 EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGG 99
Query: 131 NHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQ 190
G L AL FRLLRQ G+ VS + F+ F+++ G +N+ D ++SLYEAS
Sbjct: 100 FDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASF 159
Query: 191 LSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQ 250
L++ GE++LDEA F+++ L E + +LA V H L P H Q
Sbjct: 160 LALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELP-----------LHRRTQ 208
Query: 251 GNEYVWILD-----------LKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFAR 299
E VW ++ L ELA +D+ ++QS++Q+++ + S+WW+ +GLA KL FAR
Sbjct: 209 RLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFAR 268
Query: 300 DQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWD 359
D+ ++ + W++ +P S R + K S G LD L LFT+A+ RWD
Sbjct: 269 DRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWD 328
Query: 360 LGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFA 419
+ I LP+ MK+CF AL + NEI+ K+ G N + L KAW LCNAFL EAKW
Sbjct: 329 VNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLY 388
Query: 420 SGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLW 479
+ P ++Y N SS L L+ +F + I E + + I+S + I RL
Sbjct: 389 NKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLC 448
Query: 480 DDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFS 539
+DL SA E G + + Y M + ++ E A + M+ I + WK++N+E L + F+
Sbjct: 449 NDLASASAEIARGETANSVSCY-MRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFA 507
Query: 540 ASFTRASLNIARMVPLMYSYDDNQRLP 566
F ++N+AR Y D P
Sbjct: 508 KPFVETAINLARQSHCTYHNGDAHTSP 534
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 167/470 (35%), Positives = 254/470 (54%), Gaps = 15/470 (3%)
Query: 97 EGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYV 156
+ LA ID+VQRLG+ Y+F EIE L+ ++ N+ D NDL ++RFRLLR+ GY V
Sbjct: 72 QKLAFIDSVQRLGVSYHFTKEIEDELEN---IYHNNNDAENDLYTTSIRFRLLREHGYNV 128
Query: 157 SPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATH 216
S DVFN F++++G K +++ D+ GL+ LY+AS L + GED+LDEA F+ + LS
Sbjct: 129 SCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVAS 188
Query: 217 LADYDLAGLVKHLLLHPYRKSLS--SARNFF--HGNFQGNEYVWILDLKELANMDFKLVQ 272
L D+ L+ V H L R+ L AR++ + + + + L E A +DF ++Q
Sbjct: 189 L-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA----LLEFAKIDFNMLQ 243
Query: 273 SLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXX 332
LH+KE+ +I +WWK+L +KL +ARD+ ++ Y W + +P S R LTK I+
Sbjct: 244 FLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMA 303
Query: 333 XXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEH 392
+ L +T AI RWD+ I+++PE MK +KAL D+ E+ V EH
Sbjct: 304 SIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLV-AEH 362
Query: 393 GYN-PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLG 451
G V + A L ++L EAKW P EE+ N + + G + + F +G
Sbjct: 363 GRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMG 422
Query: 452 HGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAE 511
+T ET + S+P I+ + I R DD+ K +++ +D S I YM E+ VTA+
Sbjct: 423 DIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY-GVTAQ 481
Query: 512 DAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDD 561
+A + AWK LNQE L P SLN+AR++ ++Y D
Sbjct: 482 EAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGD 531
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/493 (34%), Positives = 262/493 (53%), Gaps = 19/493 (3%)
Query: 77 AKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRH 136
A +D VK +L + D L +ID ++RLGI +F+ EI +IL S ++N+
Sbjct: 67 AGMIDQVKMMLQE--EVDSIRRLELIDDLRRLGISCHFEREIVEILN--SKYYTNNEIDE 122
Query: 137 NDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKS-KQNISGDINGLMSLYEASQLSIVG 195
DL ALRFRLLRQ + VS +VF+ F+N +G K ++ D GL+ LYEAS LS G
Sbjct: 123 RDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQG 182
Query: 196 EDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHP--YRKSLSSARNFFHGNFQGNE 253
E+ L A DF+ L + D +L ++ L P +R + +AR+F +
Sbjct: 183 EETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFI------DA 236
Query: 254 YVWILDLK----ELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWS 309
Y D+ ELA +DF +VQ+ Q+E+ + S+WW GL +L F RD+ ++ Y W+
Sbjct: 237 YKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWT 296
Query: 310 MACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPEC 369
++RI LTK + G L+ L LFT AI RWD+ ++QLP
Sbjct: 297 TGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPY 356
Query: 370 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEY 429
M+IC+ AL + NE++ ++ G++ LRK W L ++L EAKW+ G P EEY
Sbjct: 357 MQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEY 416
Query: 430 LKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDEN 489
+KN +S G L H+FF L I E + IV + TILRL DD+G++ DE
Sbjct: 417 MKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEV 476
Query: 490 QDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNI 549
+ G+ + YM E ++ + E+A++H I WK +N+E ++ + FS F S N+
Sbjct: 477 ERGDVPKSVQCYMNE-KNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANL 534
Query: 550 ARMVPLMYSYDDN 562
ARM +Y ++ +
Sbjct: 535 ARMAQWIYQHESD 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 169/529 (31%), Positives = 269/529 (50%), Gaps = 34/529 (6%)
Query: 70 DDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVF 129
+D H+ A +L + + + + D L +ID +QR+G+ +FQ+E ++IL SI
Sbjct: 26 EDKHVIRASELVTLVKMELE-KETDQIRQLELIDDLQRMGLSDHFQNEFKEILS--SIYL 82
Query: 130 SNH------GDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLM 183
+H DL +L FRLLR+ G+ V+ +VF++F+N+EG+ K+++S D GL+
Sbjct: 83 DHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLL 142
Query: 184 SLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLA-DYDLAGLVKHLLLHPYRKSLSSAR 242
LYEAS L GE L+ A +F+ L E D DL + + L P +
Sbjct: 143 QLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIK--- 199
Query: 243 NFFHGNFQGNEYVWILDLK----------ELANMDFKLVQSLHQKEIVQISKWWKELGLA 292
+ N VWI + ELA +D +VQ+ Q+E+ + +WW+ G
Sbjct: 200 -------RPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFV 252
Query: 293 KKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFT 352
+KL FARD+ ++ Y W+ + RI + K + G L+ L FT
Sbjct: 253 EKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFT 312
Query: 353 EAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFL 412
+ I RWD+ I+QLP+ M++CF ALN+ ++ S V KE G N + LR++W L + ++
Sbjct: 313 DLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYM 372
Query: 413 TEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSV 472
EA+WF G P EEYL+N S L HIFF + T ETV + +V
Sbjct: 373 VEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWS 432
Query: 473 ATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQEC 532
+ +LRL DDLG++ +E G+ + YM ++ AE A+KH I++ WK++N E
Sbjct: 433 SFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE-ARKHVKWLIAEVWKKMNAER 491
Query: 533 LSPN-PFSASFTRASLNIARMVPLMYSYDDNQ--RLPRLEEYIKSLLFD 578
+S + PF F ++++ RM LMY D + P + + + LF+
Sbjct: 492 VSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFE 540
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 262/513 (51%), Gaps = 16/513 (3%)
Query: 76 HAKKLDAVK----HILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSN 131
+AK+++A+K ++L+ G + L +IDT++RLGI Y+F+ EI+ IL + N
Sbjct: 42 YAKEIEALKEQTRNMLLATGMKLA-DTLNLIDTIERLGISYHFEKEIDDILDQ----IYN 96
Query: 132 HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQL 191
NDL AL+FRLLRQ G+ +SP++F+ F+++ GK K++++ D+ GL++LYEAS +
Sbjct: 97 QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 156
Query: 192 SIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQ 250
+D+L++A FS L A HL L V H L K + FF +
Sbjct: 157 RTHADDILEDALAFSTIHLESAAPHLKS-PLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 251 GNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
E L A +DF L+Q LH++E+ Q+S+WWK+L L +ARD+ ++ Y W++
Sbjct: 216 DKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL 275
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
+ +P S R+ L K IS G + L +T+AI RWD+ I++LP+ M
Sbjct: 276 GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYM 335
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
KI +KA+ D+ + ++ + V + + + E+ WF G P EYL
Sbjct: 336 KISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
N + ++ + + + T + + NP I+ + I R+ DD + + E
Sbjct: 396 SNALATTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKS 454
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550
G + I M ++ ++ ++A + AWK +N+ L P P S F LN+A
Sbjct: 455 RGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLA 513
Query: 551 RMVPLMYSYD-DNQRLPR--LEEYIKSLLFDNL 580
R+V + Y ++ D P L+ +I +LL D++
Sbjct: 514 RIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 263/513 (51%), Gaps = 16/513 (3%)
Query: 76 HAKKLDAVK----HILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSN 131
+AK+++A+K ++L+ G + L +IDT++RLGI Y+F+ EI+ IL + N
Sbjct: 44 YAKEIEALKEQTRNMLLATGMKLA-DTLNLIDTIERLGISYHFEKEIDDILDQ----IYN 98
Query: 132 HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQL 191
NDL AL+FRLLRQ G+ +SP++F+ F+++ GK K++++ D+ GL++LYEAS +
Sbjct: 99 QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 158
Query: 192 SIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQ 250
+D+L++A FS L A HL L V H L K + FF +
Sbjct: 159 RTHADDILEDALAFSTIHLESAAPHLKS-PLREQVTHALEQCLHKGVPRVETRFFISSIY 217
Query: 251 GNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
E L A +DF L+Q LH++E+ Q+S+WWK+L L +ARD+ ++ Y W++
Sbjct: 218 DKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTL 277
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
+ +P S R+ L K IS G + L +T+AI RWD+ I++LP+ M
Sbjct: 278 GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYM 337
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
KI +KA+ D+ + ++ + V + + + E+ WF G P EYL
Sbjct: 338 KISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYL 397
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
N + ++ +L + + T + + NP I+ + I R+ DD + + E
Sbjct: 398 SNALATTTYYLLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKS 456
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550
G + I M ++ ++ ++A + AWK +N+ L P P S F LN+A
Sbjct: 457 RGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLA 515
Query: 551 RMVPLMYSYD-DNQRLPR--LEEYIKSLLFDNL 580
R++ + Y ++ D P L+ +I +LL D++
Sbjct: 516 RIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 262/513 (51%), Gaps = 16/513 (3%)
Query: 76 HAKKLDAVK----HILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSN 131
+AK+++A+K ++L+ G + L +IDT++RLGI Y+F+ EI+ IL + N
Sbjct: 29 YAKEIEALKEQTRNMLLATGMKLA-DTLNLIDTIERLGISYHFEKEIDDILDQ----IYN 83
Query: 132 HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQL 191
NDL AL+FRLLRQ G+ +SP++F+ F+++ GK K++++ D+ GL++LYEAS +
Sbjct: 84 QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 143
Query: 192 SIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQ 250
+D+L++A FS L A HL L V H L K + FF +
Sbjct: 144 RTHADDILEDALAFSTIHLESAAPHLKS-PLREQVTHALEQCLHKGVPRVETRFFISSIY 202
Query: 251 GNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
E L A +DF L+Q LH++E+ Q+S+WWK+L L +ARD+ ++ Y W++
Sbjct: 203 DKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL 262
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
+ +P S R+ L K IS G + L +T+AI RWD+ I++LP+ M
Sbjct: 263 GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYM 322
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
KI +KA+ D+ + ++ + V + + + E+ WF G P EYL
Sbjct: 323 KISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 382
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
N + ++ + + + T + + NP I+ + I R+ DD + + E
Sbjct: 383 SNALATTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKS 441
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550
G + I M ++ ++ ++A + AWK +N+ L P P S F LN+A
Sbjct: 442 RGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLA 500
Query: 551 RMVPLMYSYD-DNQRLPR--LEEYIKSLLFDNL 580
R+V + Y ++ D P L+ +I +LL D++
Sbjct: 501 RIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 533
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 262/513 (51%), Gaps = 16/513 (3%)
Query: 76 HAKKLDAVK----HILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSN 131
+AK+++A+K ++L+ G + L +IDT++RLGI Y+F+ EI+ IL + N
Sbjct: 44 YAKEIEALKEQTRNMLLATGMKLA-DTLNLIDTIERLGISYHFEKEIDDILDQ----IYN 98
Query: 132 HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQL 191
NDL AL+FRLLRQ G+ +SP++F+ F+++ GK K++++ D+ GL++LYEAS +
Sbjct: 99 QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 158
Query: 192 SIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQ 250
+D+L++A FS L A HL L V H L K + FF +
Sbjct: 159 RTHADDILEDALAFSTIHLESAAPHLKS-PLREQVTHALEQCLHKGVPRVETRFFISSIY 217
Query: 251 GNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
E L A +DF L+Q LH++E+ Q+S+WWK+L L +ARD+ ++ Y W++
Sbjct: 218 DKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL 277
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
+ +P S R+ L K IS G + L +T+AI RWD+ I++LP+ M
Sbjct: 278 GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYM 337
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
KI +KA+ D+ + ++ + V + + + E+ WF G P EYL
Sbjct: 338 KISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 397
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
N + ++ + + + T + + NP I+ + I R+ DD + + E
Sbjct: 398 SNALATTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKS 456
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550
G + I M ++ ++ ++A + AWK +N+ L P P S F LN+A
Sbjct: 457 RGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLA 515
Query: 551 RMVPLMYSYD-DNQRLPR--LEEYIKSLLFDNL 580
R+V + Y ++ D P L+ +I +LL D++
Sbjct: 516 RIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 262/513 (51%), Gaps = 16/513 (3%)
Query: 76 HAKKLDAVK----HILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSN 131
+AK+++A+K ++L+ G + L +IDT++RLGI Y+F+ EI+ IL + N
Sbjct: 42 YAKEIEALKEQTRNMLLATGMKLA-DTLNLIDTIERLGISYHFEKEIDDILDQ----IYN 96
Query: 132 HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQL 191
NDL AL+FRLLRQ G+ +SP++F+ F+++ GK K++++ D+ GL++LYEAS +
Sbjct: 97 QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 156
Query: 192 SIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQ 250
+D+L++A FS L A HL L V H L K + FF +
Sbjct: 157 RTHADDILEDALAFSTIHLESAAPHLKS-PLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 251 GNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
E L A +DF L+Q LH++E+ Q+S+WWK+L L +ARD+ ++ Y W++
Sbjct: 216 DKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL 275
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
+ +P S R+ L K IS G + L +T+AI RWD+ I++LP+ M
Sbjct: 276 GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYM 335
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
KI +KA+ D+ + ++ + V + + + E+ WF G P EYL
Sbjct: 336 KISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
N + ++ + + + T + + NP I+ + I R+ DD + + E
Sbjct: 396 SNALATTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKS 454
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550
G + I M ++ ++ ++A + AWK +N+ L P P S F LN+A
Sbjct: 455 RGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLA 513
Query: 551 RMVPLMYSYD-DNQRLPR--LEEYIKSLLFDNL 580
R+V + Y ++ D P L+ +I +LL D++
Sbjct: 514 RIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/488 (30%), Positives = 248/488 (50%), Gaps = 11/488 (2%)
Query: 97 EGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYV 156
+ L +ID ++RLGI Y+F+ EI++IL + N NDL AL+FRLLRQ G+ +
Sbjct: 66 DTLNLIDIIERLGISYHFEKEIDEILDQ----IYNQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 157 SPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATH 216
SP++F+ F+++ GK K++++ D+ GL++LYEAS + +D+L++A FS L A H
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 217 LADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQGNEYVWILDLKELANMDFKLVQSLH 275
L L V H L K + FF + E L A +DF L+Q LH
Sbjct: 182 LKS-PLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 276 QKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXX 335
++E+ Q+S+WWK+L L +ARD+ ++ Y W++ + +P S R+ L K IS
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 336 XXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYN 395
G + L +T+AI RWD+ I++LP+ MKI +KA+ D+ + ++ +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGIT 455
V + + + E+ WF G P EYL N + ++ + + + T
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSA-T 419
Query: 456 SETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQK 515
+ + NP I+ + I R+ DD + + E G + I M ++ ++ ++A
Sbjct: 420 EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY-GISTKEAMA 478
Query: 516 HAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYD-DNQRLPR--LEEYI 572
+ AWK +N+ L P P S F LN+AR+V + Y ++ D P L+ +I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHI 538
Query: 573 KSLLFDNL 580
+LL D++
Sbjct: 539 INLLVDSI 546
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/488 (30%), Positives = 248/488 (50%), Gaps = 11/488 (2%)
Query: 97 EGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYV 156
+ L +ID ++RLGI Y+F+ EI++IL + N NDL AL+FRLLRQ G+ +
Sbjct: 66 DTLNLIDIIERLGISYHFEKEIDEILDQ----IYNQNSNCNDLCTSALQFRLLRQHGFNI 121
Query: 157 SPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATH 216
SP++F+ F+++ GK K++++ D+ GL++LYEAS + +D+L++A FS L A H
Sbjct: 122 SPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH 181
Query: 217 LADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQGNEYVWILDLKELANMDFKLVQSLH 275
L L V H L K + FF + E L A +DF L+Q LH
Sbjct: 182 LKS-PLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 276 QKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXX 335
++E+ Q+S+WWK+L L +ARD+ ++ Y W++ + +P S R+ L K IS
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 336 XXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYN 395
G + L +T+AI RWD+ I++LP+ MKI +KA+ D+ + ++ +
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGIT 455
V + + + E+ WF G P EYL N + ++ + + + T
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSA-T 419
Query: 456 SETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQK 515
+ + NP I+ + I R+ DD + + E G + I M ++ ++ ++A
Sbjct: 420 EQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY-GISTKEAMA 478
Query: 516 HAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYD-DNQRLPR--LEEYI 572
+ AWK +N+ L P P S F LN+AR+V + Y ++ D P L+ +I
Sbjct: 479 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHI 538
Query: 573 KSLLFDNL 580
+LL D++
Sbjct: 539 INLLVDSI 546
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/513 (30%), Positives = 261/513 (50%), Gaps = 16/513 (3%)
Query: 76 HAKKLDAVK----HILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSN 131
+AK+++A+K ++L+ G + L +IDT++RLGI Y+F+ EI+ IL + N
Sbjct: 42 YAKEIEALKEQTRNMLLATGMKLA-DTLNLIDTIERLGISYHFEKEIDDILDQ----IYN 96
Query: 132 HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQL 191
NDL AL+FRLLRQ G+ +SP++F+ F+++ GK K++++ D+ GL++LYEAS +
Sbjct: 97 QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 156
Query: 192 SIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQ 250
+D+L++A FS L A HL L V H L K + FF +
Sbjct: 157 RTHADDILEDALAFSTIHLESAAPHLKS-PLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 251 GNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
E L A +DF L+Q LH++E+ Q+S+WWK+L L +ARD+ ++ Y ++
Sbjct: 216 DKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSAL 275
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
+ +P S R+ L K IS G + L +T+AI RWD+ I++LP+ M
Sbjct: 276 GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYM 335
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
KI +KA+ D+ + ++ + V + + + E+ WF G P EYL
Sbjct: 336 KISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
N + ++ + + + T + + NP I+ + I R+ DD + + E
Sbjct: 396 SNALATTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKS 454
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550
G + I M ++ ++ ++A + AWK +N+ L P P S F LN+A
Sbjct: 455 RGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLA 513
Query: 551 RMVPLMYSYD-DNQRLPR--LEEYIKSLLFDNL 580
R+V + Y ++ D P L+ +I +LL D++
Sbjct: 514 RIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/513 (30%), Positives = 261/513 (50%), Gaps = 16/513 (3%)
Query: 76 HAKKLDAVK----HILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSN 131
+AK+++A+K ++L+ G + L +IDT++RLGI Y+F+ EI+ IL + N
Sbjct: 42 YAKEIEALKEQTRNMLLATGMKLA-DTLNLIDTIERLGISYHFEKEIDDILDQ----IYN 96
Query: 132 HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQL 191
NDL AL+FRLLRQ G+ +SP++F+ F+++ GK K++++ D+ GL++LYEAS +
Sbjct: 97 QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 156
Query: 192 SIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQ 250
+D+L++A FS L A HL L V H L K + FF +
Sbjct: 157 RTHADDILEDALAFSTIHLESAAPHLKS-PLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 251 GNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
E L A +DF L+Q LH++E+ Q+S+WWK+L L +ARD+ ++ Y ++
Sbjct: 216 DKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSAL 275
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
+ +P S R+ L K IS G + L +T+AI RWD+ I++LP+ M
Sbjct: 276 GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYM 335
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
KI +KA+ D+ + ++ + V + + + E+ WF G P EYL
Sbjct: 336 KISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
N + ++ + + + T + + NP I+ + I R+ DD + + E
Sbjct: 396 SNALATTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKS 454
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550
G + I M ++ ++ ++A + AWK +N+ L P P S F LN+A
Sbjct: 455 RGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLA 513
Query: 551 RMVPLMYSYD-DNQRLPR--LEEYIKSLLFDNL 580
R+V + Y ++ D P L+ +I +LL D++
Sbjct: 514 RIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 260/536 (48%), Gaps = 44/536 (8%)
Query: 69 NDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIV 128
++ H+D +L IL++ +P + L +I ++ LG+ +FQDEI++IL ++
Sbjct: 29 TEERHLDRKAELIVQVRILLK-EKMEPVQQLELIHDLKYLGLSDFFQDEIKEIL---GVI 84
Query: 129 FSNHGDRHN------DLQEVALRFRLLRQQGYYVSPDVFNNFRNKEG-KSKQNISGDING 181
++ H HN DL AL FRLLRQ G+ +S DVFN F+N++G K +++ D G
Sbjct: 85 YNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKG 144
Query: 182 LMSLYEASQLSIVGEDVLDEAGDFSVNLLS---EYATHLADYDLAGLVKHLLLHPYRKSL 238
++ LYEAS L GED L+ A +F+ L + + D +L ++H L P
Sbjct: 145 MLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLP----- 199
Query: 239 SSARNFFHGNFQGNEYVWILD-----------LKELANMDFKLVQSLHQKEIVQISKWWK 287
H Q E W +D + ELA ++F ++Q+ HQ+E+ +S+WW
Sbjct: 200 ------LHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWS 253
Query: 288 ELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDV 347
L +KL F RD+ ++ + W++ F +QR I G LD
Sbjct: 254 RLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDE 313
Query: 348 LTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSL 407
L LFT+ RWD I +LP M++C+ +++ ++ + + KEHG+ + LRK+ L
Sbjct: 314 LELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDL 373
Query: 408 CNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDS--- 464
A+ EAKW+ SG P +EYL +S + +F + S +IDS
Sbjct: 374 VEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANA--SHDTAVIDSLYQ 431
Query: 465 NPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDA 524
I+ ILRL DDLG++ E G+ I YM E + + E+A +H I +A
Sbjct: 432 YHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKE-TNASEEEAVEHVKFLIREA 490
Query: 525 WKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRL--PRLEEYIKSLLFD 578
WK +N + PF + NI R+ +Y + D + + E+I LLF+
Sbjct: 491 WKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFE 546
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 267/550 (48%), Gaps = 41/550 (7%)
Query: 72 IHIDHAKKLDAVKHILIRVGDDDP-------FEGLAMIDTVQRLGIDYYFQDEIEQILQR 124
+H AK L+ + ++I+ G+ P E L ++D + RLGI +F+ EI++ L
Sbjct: 268 MHTGDAKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDY 327
Query: 125 QSIVFSNHG---DRHN---DLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGK---SKQNI 175
++ G R N DL+ AL FRLLR Y VSP +F+NF++ GK S
Sbjct: 328 VYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQF 387
Query: 176 SGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEY----ATHLA---DYDLAGLVKH 228
+ D+ +++LY ASQL+ GE++LDEA F+ L E T A +L+ +K+
Sbjct: 388 NKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKY 447
Query: 229 LLLHPYRKSLSSARNFFHGNFQGNEYVWIL------------DLKELANMDFKLVQSLHQ 276
L + S+ + +Y I EL +DF ++QS+HQ
Sbjct: 448 ALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQ 507
Query: 277 KEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXX 336
+E+ ++ W+++ GL FAR++PL++Y A +P + R TK
Sbjct: 508 EEMKNVTSWFRDSGLP-LFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLD 566
Query: 337 XXXXXXGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNP 396
G LD L LFTEA+ RWDL E LP+ MK+C++ DI +E++ + KE G
Sbjct: 567 DMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGREL 626
Query: 397 VHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVH-IFFLLGHGIT 455
V RK W + EA+W A+ +P +EY+KNGI S G + L+ + + G ++
Sbjct: 627 VSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLS 686
Query: 456 SETVRLID-SNPPIVSSVATIL-RLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDA 513
E + +D +++ + +++ RL DD + K E G S I YM +H + T E+A
Sbjct: 687 QEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEA 746
Query: 514 QKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLE--EY 571
H + A K L +E L P+ + + R+ +++ D + +LE ++
Sbjct: 747 LDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDH 806
Query: 572 IKSLLFDNLP 581
IK L + LP
Sbjct: 807 IKECLIEPLP 816
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 147/511 (28%), Positives = 239/511 (46%), Gaps = 29/511 (5%)
Query: 94 DPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHG---DRHN---DLQEVALRFR 147
D E L+++D ++ LGI +F+ EI+ L +S G R + DL AL R
Sbjct: 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLR 304
Query: 148 LLRQQGYYVSPDVFNNFRNKEGK---SKQNISGDINGLMSLYEASQLSIVGEDVLDEAGD 204
LR GY VS DV NNF+++ G+ S ++ +++L+ AS L+ E +D+A
Sbjct: 305 TLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARK 364
Query: 205 FSVNLLSE-YATHLA-DYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILD--- 259
F+ L E AT ++ + L +++++ +P+ S+ + + + YVW
Sbjct: 365 FAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLY 424
Query: 260 ---------LKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSM 310
ELA +DF +VQSLHQ+E+ +++WWKE G+A + F R + + Y +S
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVY-FSS 482
Query: 311 ACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWDLGGIEQLPECM 370
A F +P S RI TK LD L FTE + RWD + ++PECM
Sbjct: 483 ATF-EPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECM 541
Query: 371 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430
+ CFK + E++N V K G + + +RK W N ++ E +W +G +P EEYL
Sbjct: 542 QTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYL 601
Query: 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQ 490
K +S G+ + L+G + + V + + V+ RL +D + + E
Sbjct: 602 KTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKA 661
Query: 491 DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSP-NPFSASFTRASLNI 549
G S I YM ++ T EDA KH + A K + E P N N+
Sbjct: 662 RGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNL 721
Query: 550 ARMVPLMYSYDDNQRLP--RLEEYIKSLLFD 578
V + Y + D + +++YI+ + D
Sbjct: 722 RLCVQIFYKFIDGYGIANEEIKDYIRKVYID 752
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 197 bits (502), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 153/546 (28%), Positives = 258/546 (47%), Gaps = 56/546 (10%)
Query: 78 KKLDAVKHILIRVGDDDP-------FEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFS 130
K LD + +L + G+ P FE L +DTV+RLGID +F++EI++ L V+S
Sbjct: 246 KCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEAL---DYVYS 302
Query: 131 NHGDRH---------NDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKS----KQNISG 177
+ +R D+ + A+ R+LR GY VS DV FR++ G+ Q G
Sbjct: 303 HWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRG 362
Query: 178 DINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYD-------LAGLVKHLL 230
+ ++++ S +S GE +++EA + L ++ +D + G V++ L
Sbjct: 363 -VTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYAL 421
Query: 231 LHPYRKSLS--SARNFFHGNFQGNEYVWI------------LDLKELANMDFKLVQSLHQ 276
+P+ KS+ AR++ G + VW+ ELA +DF VQS+HQ
Sbjct: 422 KYPWHKSMPRLEARSYIEN--YGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQ 479
Query: 277 KEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXX 336
E+ + +WWK G L F R++ + Y + +P S R TK +
Sbjct: 480 TELQDLRRWWKSSGFTD-LNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILD 538
Query: 337 XXXXXXGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNP 396
G+LD L LFTE++ RWDL ++Q+P+ MKICF + N+I+ + + G +
Sbjct: 539 DLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDV 598
Query: 397 VHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIF--FLLGHGI 454
+ ++ W A+ EA+W + +P EY++N VS + LG V + G +
Sbjct: 599 LGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVS--IALGTVVLISALFTGEVL 656
Query: 455 TSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQ 514
T E + ID + + RL +D + + E G S I YM +H ++ E+A
Sbjct: 657 TDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEAL 716
Query: 515 KHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP---RLEEY 571
+H + +A + LN+E ++ N + R AR++ L Y D L ++E+
Sbjct: 717 QHVYSVMENALEELNREFVN-NKIPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEH 775
Query: 572 IKSLLF 577
+K+ LF
Sbjct: 776 VKNCLF 781
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 124/266 (46%), Gaps = 37/266 (13%)
Query: 94 DPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHG------DRHNDLQEVALRFR 147
D FE + ++D +QRLGI YF++EI++ L ++++G D+ + A+ FR
Sbjct: 244 DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFR 303
Query: 148 LLRQQGYYVSPDVFNNFRNKE------GKSKQNISGDINGLMSLYEASQLSIVGEDVLDE 201
LLRQ GY VS DVF NF + G+S Q ++ G+ +LY ASQL+ E++L
Sbjct: 304 LLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVT----GMFNLYRASQLAFPREEILKN 359
Query: 202 AGDFSVNLLSEYATH--LAD-----YDLAGLVKHLLLHPYRKSLSSARN-FFHGNFQGNE 253
A +FS N L E L D DL G + L P+ SL F+ + G
Sbjct: 360 AKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGEN 419
Query: 254 YVWILD------------LKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQ 301
VWI ELA D+ Q+ HQ E KW++E L+ + R +
Sbjct: 420 DVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLS-EWGVRRSE 478
Query: 302 PLKWYMWSMACFTDPSLSWQRIELTK 327
L+ Y + A + S +R+ K
Sbjct: 479 LLECYYLAAATIFESERSHERMVWAK 504
>pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst
pdb|4PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-Cst
Length = 468
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 64 HRSFNNDDIHIDHA--KKLDAVKHILIRVGD-----DDPFEGL-AMIDTVQRLGIDYYFQ 115
H F D ++ H K ++ V HIL G D+ F+ L A D LGI+YY
Sbjct: 242 HNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMS 301
Query: 116 DEIEQILQRQSIVFSNHGDR 135
D ++ I+ + G++
Sbjct: 302 DWMQAFDGETEIIHNGKGEK 321
>pdb|2PBG|A Chain A, 6-Phospho-Beta-D-Galactosidase Form-B
Length = 468
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 64 HRSFNNDDIHIDHA--KKLDAVKHILIRVGD-----DDPFEGL-AMIDTVQRLGIDYYFQ 115
H F D ++ H K ++ V HIL G D+ F+ L A D LGI+YY
Sbjct: 242 HNKFILDATYLGHYCDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMS 301
Query: 116 DEIEQILQRQSIVFSNHGDR 135
D ++ I+ + G++
Sbjct: 302 DWMQAFDGETEIIHNGKGEK 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,072,866
Number of Sequences: 62578
Number of extensions: 764581
Number of successful extensions: 1770
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 24
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)