Query 007889
Match_columns 586
No_of_seqs 235 out of 899
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 16:42:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 8E-150 2E-154 1248.5 49.7 531 42-579 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 3E-136 7E-141 1161.6 44.2 486 92-584 267-780 (784)
3 PLN02592 ent-copalyl diphospha 100.0 3E-109 7E-114 936.8 39.7 444 92-581 307-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 6.5E-55 1.4E-59 420.0 11.0 176 53-230 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 2.6E-48 5.7E-53 395.0 19.2 269 260-529 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 2.8E-45 6.2E-50 375.4 29.1 283 274-557 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 4.2E-33 9E-38 289.5 19.4 248 277-531 13-264 (303)
8 PLN02150 terpene synthase/cycl 100.0 1.6E-29 3.6E-34 219.4 9.8 93 489-582 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 4.6E-20 9.9E-25 180.7 11.0 229 308-551 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.5 0.00083 1.8E-08 71.5 11.5 223 316-564 79-306 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.5 0.0021 4.6E-08 67.5 13.8 222 318-565 81-307 (357)
12 cd00867 Trans_IPPS Trans-Isopr 85.4 11 0.00024 37.5 11.8 89 396-489 86-175 (236)
13 PF00494 SQS_PSY: Squalene/phy 80.6 30 0.00066 35.1 13.1 183 319-530 17-217 (267)
14 TIGR02749 prenyl_cyano solanes 67.0 1.3E+02 0.0029 31.8 14.1 89 395-487 133-221 (322)
15 PLN02857 octaprenyl-diphosphat 64.5 97 0.0021 34.3 12.7 88 396-487 228-315 (416)
16 cd00685 Trans_IPPS_HT Trans-Is 64.4 1.1E+02 0.0024 31.1 12.5 89 395-487 108-196 (259)
17 TIGR03464 HpnC squalene syntha 63.5 1.8E+02 0.0039 29.8 17.0 117 305-448 7-129 (266)
18 cd00683 Trans_IPPS_HH Trans-Is 57.7 2.2E+02 0.0048 28.9 16.8 197 320-550 24-236 (265)
19 PLN02890 geranyl diphosphate s 57.0 2.1E+02 0.0044 31.8 13.6 89 395-487 227-315 (422)
20 COG0142 IspA Geranylgeranyl py 54.5 2.9E+02 0.0063 29.3 15.1 106 395-505 134-249 (322)
21 TIGR03465 HpnD squalene syntha 54.0 2.6E+02 0.0056 28.5 17.5 191 320-546 18-223 (266)
22 KOG1719 Dual specificity phosp 51.3 12 0.00027 35.6 2.6 31 490-520 119-149 (183)
23 TIGR02748 GerC3_HepT heptapren 45.8 3.9E+02 0.0084 28.2 13.5 86 396-487 130-217 (319)
24 CHL00151 preA prenyl transfera 41.2 4.6E+02 0.01 27.8 13.4 87 396-487 135-222 (323)
25 PLN02632 phytoene synthase 35.3 5.8E+02 0.013 27.2 16.2 105 321-448 74-183 (334)
26 COG3707 AmiR Response regulato 30.3 41 0.00088 33.2 2.6 43 477-520 129-172 (194)
27 PF03861 ANTAR: ANTAR domain; 27.2 52 0.0011 25.5 2.3 28 494-522 15-42 (56)
28 KOG3887 Predicted small GTPase 27.1 1E+02 0.0023 31.7 4.9 182 312-511 87-314 (347)
29 COG4738 Predicted transcriptio 24.8 2E+02 0.0043 26.1 5.6 81 99-186 14-101 (124)
30 COG1191 FliA DNA-directed RNA 23.8 8.1E+02 0.017 25.2 11.0 76 274-370 6-81 (247)
31 smart00463 SMR Small MutS-rela 22.5 1E+02 0.0022 25.3 3.3 22 505-527 7-28 (80)
32 PF10776 DUF2600: Protein of u 21.3 1E+03 0.023 25.5 14.8 76 446-530 198-273 (330)
33 PRK10888 octaprenyl diphosphat 20.9 5.3E+02 0.012 27.3 9.2 88 395-487 130-218 (323)
34 KOG3906 Tryptophan 2,3-dioxyge 20.5 5.4E+02 0.012 26.9 8.5 114 72-195 78-209 (399)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=7.9e-150 Score=1248.45 Aligned_cols=531 Identities=39% Similarity=0.651 Sum_probs=507.9
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhc--CCCCcccchhHHHHHHHhCCccchHHHHH
Q 007889 42 NGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRV--GDDDPFEGLAMIDTVQRLGIDYYFQDEIE 119 (586)
Q Consensus 42 r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~--~~~d~~~~L~lID~lqrLGi~~hFe~EI~ 119 (586)
|+++|||||+|+.|+|+|+++++.. . ....++.+++|++||+||... +. |++++|++||+||||||+|||++||+
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~-~-~~~~~~~~~lk~~v~~~~~~~~~~~-~~~~~l~liD~lqrLGi~~hF~~EI~ 77 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE-E-DELEEEIEELKEEVRKMLEDSEYPV-DLFERLWLIDRLQRLGISYHFEDEIK 77 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch-h-HHHHHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 7899999999944499999776532 1 245677789999999999863 34 89999999999999999999999999
Q ss_pred HHHHHHHhhhcCCC-CCCCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCchH
Q 007889 120 QILQRQSIVFSNHG-DRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDV 198 (586)
Q Consensus 120 ~~L~~i~~~~~~~~-~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~i 198 (586)
++|++||++|.+.+ ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+||||+|
T Consensus 78 ~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~i 157 (542)
T cd00684 78 EILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDI 157 (542)
T ss_pred HHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHH
Confidence 99999999886432 34579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh---cCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHHhh
Q 007889 199 LDEAGDFSVNLLSEYATH---LADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQS 273 (586)
Q Consensus 199 LdeA~~Ft~~~L~~~~~~---~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~Q~ 273 (586)
||||++||++||++.+++ + +++|+++|++||++|||+++|| ||+|| ++|+++ +++|++||||||+|||+||+
T Consensus 158 LdeA~~ft~~~L~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yi-~~Y~~~-~~~n~~lLelAkldfn~~Q~ 234 (542)
T cd00684 158 LDEALSFTTKHLEEKLESNWII-DPDLSGEIEYALEIPLHASLPRLEARWYI-EFYEQE-DDHNETLLELAKLDFNILQA 234 (542)
T ss_pred HHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHccCchhcCCchHHHHHHH-HHhCCC-ccccHHHHHHHHHHHHHHhH
Confidence 999999999999999986 5 8899999999999999999999 99999 999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHH
Q 007889 274 LHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTE 353 (586)
Q Consensus 274 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 353 (586)
+||+||++++|||+++||.+++||+|+|+++||||++|++|||++|.+|+++||+++|+|++||+||.|||.+|++.||+
T Consensus 235 ~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ 314 (542)
T cd00684 235 LHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTE 314 (542)
T ss_pred hHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 007889 354 AINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNG 433 (586)
Q Consensus 354 ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~ 433 (586)
||+|||+++++.+|+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+++||+||++|||++|
T Consensus 315 ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~ 394 (542)
T cd00684 315 AVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENA 394 (542)
T ss_pred HHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHH
Q 007889 434 IVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDA 513 (586)
Q Consensus 434 ~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA 513 (586)
++|+|+++++++++++||..+|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+ |+|+|+|
T Consensus 395 ~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~-g~s~eeA 473 (542)
T cd00684 395 LVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEY-GVSEEEA 473 (542)
T ss_pred hHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhc-CCCHHHH
Confidence 999999999999999999999999999987789999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhcccc
Q 007889 514 QKHAMDKISDAWKRLNQECLSP-NPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDN 579 (586)
Q Consensus 514 ~~~i~~~i~~~wK~ln~e~l~~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~p 579 (586)
+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.| .+|++|++||++|
T Consensus 474 ~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 474 REEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 9999999999999999999988 7899999999999999999999999999998 5999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=3.4e-136 Score=1161.58 Aligned_cols=486 Identities=26% Similarity=0.407 Sum_probs=462.6
Q ss_pred CCCcccchhHHHHHHHhCCccchHHHHHHHHHHHHhhhcCC-CCCCCchhhhhHHhhhhhhcCccccccccccccccccc
Q 007889 92 DDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNH-GDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGK 170 (586)
Q Consensus 92 ~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~-~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~ 170 (586)
+.+.++++|+||+||||||+|||++||+++|+++|++|... .....||++|||+|||||||||+||||||++|+|+ +
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~- 344 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H- 344 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-
Confidence 46899999999999999999999999999999999988632 22347999999999999999999999999999976 4
Q ss_pred ccccc---ccchHHHhhHhhhcccccCCchHHHHHHHHHHHHHHHHhhhc------CCCChHHHHHHHccCcccCCcHH-
Q 007889 171 SKQNI---SGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHL------ADYDLAGLVKHLLLHPYRKSLSS- 240 (586)
Q Consensus 171 F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~Ft~~~L~~~~~~~------~~~~L~~~V~~aL~~P~~~~l~r- 240 (586)
|++++ .+||+||||||||||++||||+|||||+.||++||++.++.. .+++|+++|+|||++|||+++||
T Consensus 345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~Rl 424 (784)
T PLN02279 345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERL 424 (784)
T ss_pred ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHH
Confidence 99877 699999999999999999999999999999999999988741 26789999999999999999999
Q ss_pred -HhhhhhhhccCCccc------------chHhHHHHHhhchHHHhhhhHHHHHHHHHHHHHhCCcccchhhhchhhHHHH
Q 007889 241 -ARNFFHGNFQGNEYV------------WILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYM 307 (586)
Q Consensus 241 -ar~yI~~~Y~~~~~~------------~n~~lLelAklDFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf 307 (586)
||+|| ++|+++ +. +|++||||||+|||+||++||+||++++|||+++||. ++||||||++||||
T Consensus 425 EaR~yI-~~Y~~~-~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~-~L~faRdr~ve~Yf 501 (784)
T PLN02279 425 ANRRSI-ENYAVD-DTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLD-KLKFARQKLAYCYF 501 (784)
T ss_pred HHHHHH-HHhccc-cchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCc-cCCchhhHHHHHHH
Confidence 99999 999988 75 7999999999999999999999999999999999995 99999999999999
Q ss_pred hhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCC-CCCCCChhHHHHHHHHHHHHHHHHH
Q 007889 308 WSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLG-GIEQLPECMKICFKALNDITNEISN 386 (586)
Q Consensus 308 w~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~-~~~~lPeymk~~f~aL~~~~~ei~~ 386 (586)
|++|++|||++|.+|++|||++++++++||+||+|||.|||+.||+||+|||.+ .++.+|+|||+||.+|+++++|++.
T Consensus 502 ~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~ 581 (784)
T PLN02279 502 SAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGD 581 (784)
T ss_pred HHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 5689999999999999999999999
Q ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCc
Q 007889 387 KVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNP 466 (586)
Q Consensus 387 ~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p 466 (586)
++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||+|+.+|+|+.++++++++++|..+|+++++| .++|
T Consensus 582 ~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~~ 660 (784)
T PLN02279 582 KAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PELH 660 (784)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cchh
Confidence 999999999999999999999999999999999999999999999999999999988989999999999999999 5999
Q ss_pred hHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHH
Q 007889 467 PIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEH-QDVTAEDAQKHAMDKISDAWKRLNQECLSP--NPFSASFT 543 (586)
Q Consensus 467 ~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~-~g~S~EeA~~~i~~~i~~~wK~ln~e~l~~--~~~p~~~~ 543 (586)
+|+++++.|+||+|||+||++|+++||+ |+|+|||+|+ +|+|+|||+++++++|+++||+||++++++ +++|++|+
T Consensus 661 ~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~ 739 (784)
T PLN02279 661 KLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECK 739 (784)
T ss_pred HHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 9999999999999999999999999998 9999999986 489999999999999999999999999964 47999999
Q ss_pred HHHHhHhhhccceeccCCCCChhhHHHHHHhhccccccCCC
Q 007889 544 RASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQG 584 (586)
Q Consensus 544 ~~~~n~aR~~~~~Y~~~D~~t~~~~k~~i~~ll~~pi~~~~ 584 (586)
++++|++|++++||+++||||.+.||++|++||++|||+.+
T Consensus 740 ~~~ln~aR~~~~~Y~~~Dgyt~~~~k~~i~~ll~ePi~l~~ 780 (784)
T PLN02279 740 DLFWKMSKVLHLFYRKDDGFTSNDMMSLVKSVIYEPVSLQE 780 (784)
T ss_pred HHHHHHHHhhhhheeCCCCCChHHHHHHHHHHhccCCcCCc
Confidence 99999999999999999999988999999999999999865
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=3.2e-109 Score=936.75 Aligned_cols=444 Identities=26% Similarity=0.376 Sum_probs=405.2
Q ss_pred CCCcccchhHHHHHHHhCCccchHHHHHHHHHHHHhhhcCCC------CCCCchhhhhHHhhhhhhcCcccccccccccc
Q 007889 92 DDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHG------DRHNDLQEVALRFRLLRQQGYYVSPDVFNNFR 165 (586)
Q Consensus 92 ~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~------~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~ 165 (586)
+.+++++||+||+||||||+|||++||+++|+++|+.|...+ ....|+++|||+|||||||||+||||||++|+
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~ 386 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE 386 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 358999999999999999999999999999999999875422 12479999999999999999999999999998
Q ss_pred cccccccccc---ccchHHHhhHhhhcccccCCchHHHHHHHHHHHHHHHHhh--hc-----CCCChHHHHHHHccCccc
Q 007889 166 NKEGKSKQNI---SGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYAT--HL-----ADYDLAGLVKHLLLHPYR 235 (586)
Q Consensus 166 d~~g~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~Ft~~~L~~~~~--~~-----~~~~L~~~V~~aL~~P~~ 235 (586)
+ +|+|+..+ .+|++|||||||||||++|||+|||||+.||++||++.++ ++ .+++|+++|+|||++|||
T Consensus 387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~ 465 (800)
T PLN02592 387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWY 465 (800)
T ss_pred C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhh
Confidence 7 79997443 8999999999999999999999999999999999999863 11 256899999999999999
Q ss_pred CCcHH--HhhhhhhhccCCcccc-------------hHhHHHHHhhchHHHhhhhHHHHHHHHHHHHHhCCcccchhhhc
Q 007889 236 KSLSS--ARNFFHGNFQGNEYVW-------------ILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARD 300 (586)
Q Consensus 236 ~~l~r--ar~yI~~~Y~~~~~~~-------------n~~lLelAklDFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRd 300 (586)
+++|| ||+|| ++|+++ +++ |++||||||+|||+||++||+||++++|||+++||. ++|||||
T Consensus 466 ~~l~RlEaR~yI-~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRd 542 (800)
T PLN02592 466 ASLPRVETRFYI-EQYGGE-DDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRS 542 (800)
T ss_pred cCcchHHHHHHH-HHhcCC-cccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchh
Confidence 99999 99999 999987 664 999999999999999999999999999999999996 9999999
Q ss_pred hhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHh--------hcCCCCCCCCCh----
Q 007889 301 QPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAIN--------RWDLGGIEQLPE---- 368 (586)
Q Consensus 301 R~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~--------rWD~~~~~~lPe---- 368 (586)
|++|||||++|++|||++|.+|++|||++++++++||+||+|||+|||++||++|+ |||.+++++||+
T Consensus 543 r~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~ 622 (800)
T PLN02592 543 ELLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGS 622 (800)
T ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999996 899999999988
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHH
Q 007889 369 --CMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHI 446 (586)
Q Consensus 369 --ymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~ 446 (586)
|||+||.||++++||++.++.++||+++.++++++|.++|+ +|..+|+ +|+|++.+++++
T Consensus 623 ~~~mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~ 684 (800)
T PLN02592 623 VKTGEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKT 684 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHH
Confidence 99999999999999999999999999999999999999999 5666665 456777778888
Q ss_pred HH-HhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCC-CCHHHHHHHHHHHHHHH
Q 007889 447 FF-LLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQD-VTAEDAQKHAMDKISDA 524 (586)
Q Consensus 447 ~~-~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g-~S~EeA~~~i~~~i~~~ 524 (586)
++ .+|..+|+++++ +|++.++++++.||+||++|+++|.. ++| .++ +|.+++.+.|+.+
T Consensus 685 ~~l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~--------------~~~~~~~-~a~~~~~~~ie~~ 745 (800)
T PLN02592 685 INLTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKV--------------HINTYNP-EEKSKTTPSIESD 745 (800)
T ss_pred HHHhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhcc--------------cCCcccH-HHHHHHHHHHHHH
Confidence 88 459999999764 79999999999999999999999873 124 444 8999999999999
Q ss_pred HHHHHHHhcC-C-CCCCHHHHHHHHhHhhhccceeccCCCCChh-hHHHHHHhhcccccc
Q 007889 525 WKRLNQECLS-P-NPFSASFTRASLNIARMVPLMYSYDDNQRLP-RLEEYIKSLLFDNLP 581 (586)
Q Consensus 525 wK~ln~e~l~-~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~k~~i~~ll~~pi~ 581 (586)
++++.+.+++ . +.+|++||++|||++|++ |.. ||++| +|+.||++||||||+
T Consensus 746 ~~eL~~lvl~~~~~~vp~~cK~~f~~~~k~f---y~~--~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 746 MQELVQLVLQNSSDDIDPVIKQTFLMVAKSF---YYA--AYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH---HHh--hcCCHHHHHHHHHHHhCCCCC
Confidence 9999999996 3 469999999999999954 443 99999 899999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=6.5e-55 Score=420.00 Aligned_cols=176 Identities=41% Similarity=0.618 Sum_probs=145.1
Q ss_pred CCCccc-cCCCCCC----CCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHHHHHHHHh
Q 007889 53 APLKHV-TYPCEHR----SFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSI 127 (586)
Q Consensus 53 ~~d~~~-~~~~~~~----~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~ 127 (586)
=||+|+ |++|.+. ... +.+.+++++||++||.||....+ |++++|+|||+||||||+|||++||+++|+++|+
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~-~~~~~~~~~Lk~~v~~~l~~~~~-d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~ 78 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSED-EKCKERAEELKEEVRNMLPASYP-DPLEKLELIDTLQRLGISYHFEDEIKEILDSIYR 78 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhH-HHHHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhh
Confidence 077776 3333321 112 34566778999999999987656 8999999999999999999999999999999999
Q ss_pred hhcCCCCCCCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCchHHHHHHHHHH
Q 007889 128 VFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSV 207 (586)
Q Consensus 128 ~~~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Ft~ 207 (586)
.|...+....||++|||+|||||||||+||||||++|+|++|+|+.++.+||+|||||||||||+++||+|||||+.||+
T Consensus 79 ~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~ 158 (183)
T PF01397_consen 79 SWDEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTT 158 (183)
T ss_dssp TTTTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHH
T ss_pred hccccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 88754333459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCC--CChHHHHHHHc
Q 007889 208 NLLSEYATHLAD--YDLAGLVKHLL 230 (586)
Q Consensus 208 ~~L~~~~~~~~~--~~L~~~V~~aL 230 (586)
+||++++++... ++|+++|+|||
T Consensus 159 ~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 159 KHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHhC
Confidence 999999986522 24999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=2.6e-48 Score=395.02 Aligned_cols=269 Identities=31% Similarity=0.466 Sum_probs=249.5
Q ss_pred HHHHHhhchHHHhhhhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhc
Q 007889 260 LKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIF 339 (586)
Q Consensus 260 lLelAklDFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~f 339 (586)
+|+|||+|||+||++||+|++++++||+++|+..+.+.+|+|++.++|+.++++++|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 69999999999999999999999999999999668887899999999999999999997777779999999999999999
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHh
Q 007889 340 DIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGY-NPVHSLRKAWGSLCNAFLTEAKWF 418 (586)
Q Consensus 340 D~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~-~~~~~lk~~w~~~~~a~l~EAkW~ 418 (586)
|..|+.++++.|+++++||++.....+|+++++++.++.++++++...+.+.+++ ++.++|+++|.+|+.++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987788899999999999999999998887776543 377889999999999999999999
Q ss_pred hCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhh
Q 007889 419 ASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYI 498 (586)
Q Consensus 419 ~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V 498 (586)
..|++||++||+++|+.|+|+++++.+..+++|..+++...+++.++|.+.++++.+++|+|||+||+||.++|+.+|+|
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~v 240 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNLV 240 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccHH
Confidence 99999999999999999999999999999999776776666666677889999999999999999999999999999999
Q ss_pred hhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 499 YYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 499 ~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
.|+|+++ |+|.|+|++++.+|+++++++||
T Consensus 241 ~~l~~~~-~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 241 VVLMNEH-GLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhc-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999 99999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=2.8e-45 Score=375.40 Aligned_cols=283 Identities=40% Similarity=0.679 Sum_probs=266.3
Q ss_pred hhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHH
Q 007889 274 LHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTE 353 (586)
Q Consensus 274 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 353 (586)
.||+|++++++||+++||....+++|.+...+|+|+++++++|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 59999999999999999985555999999999999999999999899999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 007889 354 AINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNG 433 (586)
Q Consensus 354 ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~ 433 (586)
+++||+....+.+|+++++++.++.++++++...+.+.+|+....++++.|.+++.++.+||+|+..|++||++||+.+|
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 99999998888999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHH
Q 007889 434 IVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDA 513 (586)
Q Consensus 434 ~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA 513 (586)
+.|+|+++++.++++++|..+|++.+.+.+....+++.++.+++|+||++||+||+.+|+.+|+|.|||+++ |+|.++|
T Consensus 161 ~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~-~~~~~eA 239 (284)
T cd00868 161 RVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEY-GVSEEEA 239 (284)
T ss_pred eehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhcc-CCCHHHH
Confidence 999999999999999999999985555557788999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHhHhhhcccee
Q 007889 514 QKHAMDKISDAWKRLNQECLSP-NPFSASFTRASLNIARMVPLMY 557 (586)
Q Consensus 514 ~~~i~~~i~~~wK~ln~e~l~~-~~~p~~~~~~~~n~aR~~~~~Y 557 (586)
++++.++++++|+++++.+... ++.++.+++.+.|++|.....|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 240 LEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999998853 3678999999999999886654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=4.2e-33 Score=289.52 Aligned_cols=248 Identities=16% Similarity=0.126 Sum_probs=214.9
Q ss_pred HHHHH-HHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhH-HhcchhhHHHHHhhhcccc-CCHHHHHHHHH
Q 007889 277 KEIVQ-ISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRI-ELTKPISFIYIIDDIFDIY-GALDVLTLFTE 353 (586)
Q Consensus 277 ~El~~-lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~y-gt~eEl~~ft~ 353 (586)
.+++. ...|.++.|+. .-+.+|+++..++|+.++.++.|+++.+|+ +.|++++|+|++||+||.. ++.++++.+++
T Consensus 13 ~~~~~~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~ 91 (303)
T cd00687 13 KEAQDEYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVT 91 (303)
T ss_pred HHHHHHHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHH
Confidence 34333 56899999775 344699999999888888888999999999 7779999999999999987 58999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 007889 354 AINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNG 433 (586)
Q Consensus 354 ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~ 433 (586)
.+.++.......-|....++..++.+++.++...+ +.....++++.|.+|+.++++|++|+.+|++||++||+++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~----~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R 167 (303)
T cd00687 92 RLLDILRGDGLDSPDDATPLEFGLADLWRRTLARM----SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMR 167 (303)
T ss_pred HHHhccCCCCCCCCCCCCHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 88885443221115677888999999999886543 23456899999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhc-cCCCCchhhhhHhhcCCCCCHHH
Q 007889 434 IVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDEN-QDGNDGSYIYYYMMEHQDVTAED 512 (586)
Q Consensus 434 ~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~-~rG~v~n~V~cyMke~~g~S~Ee 512 (586)
+.|+|+.+++.++++++|..+|+++.+. +...+++++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++ |+|.|+
T Consensus 168 ~~~~g~~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~-g~s~~e 245 (303)
T cd00687 168 RFNIGADPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEH-GLSLEE 245 (303)
T ss_pred hhcccccccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHc-CCCHHH
Confidence 9999999999999999999999987654 334569999999999999999999999 8999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007889 513 AQKHAMDKISDAWKRLNQE 531 (586)
Q Consensus 513 A~~~i~~~i~~~wK~ln~e 531 (586)
|++++.++++++++++.+.
T Consensus 246 A~~~~~~~~~~~~~~f~~~ 264 (303)
T cd00687 246 AISVVRDMHNERITQFEEL 264 (303)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.96 E-value=1.6e-29 Score=219.38 Aligned_cols=93 Identities=29% Similarity=0.458 Sum_probs=90.0
Q ss_pred ccCCCCchhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccce-eccCCCCChh-
Q 007889 489 NQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLM-YSYDDNQRLP- 566 (586)
Q Consensus 489 ~~rG~v~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~-Y~~~D~~t~~- 566 (586)
++|||++|+|+|||||| |+|+|||++++++||+++||++|+|||+++++|++++++++|+||+++|+ |+++||||.+
T Consensus 1 ~~rg~vaSsIeCYMke~-g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~ 79 (96)
T PLN02150 1 MRRGEVANGVNCYMKQH-GVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPH 79 (96)
T ss_pred CCCCcchHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCc
Confidence 47899999999999999 99999999999999999999999999999999999999999999999999 9999999976
Q ss_pred -hHHHHHHhhccccccC
Q 007889 567 -RLEEYIKSLLFDNLPT 582 (586)
Q Consensus 567 -~~k~~i~~ll~~pi~~ 582 (586)
.+|++|.+||++|||+
T Consensus 80 ~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 80 GKLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 6999999999999985
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.82 E-value=4.6e-20 Score=180.69 Aligned_cols=229 Identities=22% Similarity=0.234 Sum_probs=181.9
Q ss_pred hhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007889 308 WSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNK 387 (586)
Q Consensus 308 w~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~ 387 (586)
+.+++++.|+.+..|..++++.+|++++||++|..++..+.......+ .....|..+...+..+.+.++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 445667788888999999999999999999999888766655544332 12345677778888888888887653
Q ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCch
Q 007889 388 VYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPP 467 (586)
Q Consensus 388 ~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~ 467 (586)
.. .....++.+.|.+++.++..|+.|... ..||++||+..+..++ +.++...+..+++...++ ..+......
T Consensus 76 ~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 147 (243)
T cd00385 76 GS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLSGGE--AELLEALRK 147 (243)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 22 345789999999999999999999877 8899999999999998 444555566666655554 333345577
Q ss_pred HHHHHHHHHHHhcCcccchhhccCC-CCchhhhhHhhcCCCC------------CHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007889 468 IVSSVATILRLWDDLGSAKDENQDG-NDGSYIYYYMMEHQDV------------TAEDAQKHAMDKISDAWKRLNQECLS 534 (586)
Q Consensus 468 l~~~~~~i~RL~NDI~S~kkE~~rG-~v~n~V~cyMke~~g~------------S~EeA~~~i~~~i~~~wK~ln~e~l~ 534 (586)
+...++.+.+|.||+.|+.+|.++| ...|++.++|+++ |+ +.++|++++.++++++|+++++....
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEY-GVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILS 226 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHh-CChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8889999999999999999999886 6789999999999 88 88999999999999999999887654
Q ss_pred CCCCCHHHHHHHHhHhh
Q 007889 535 PNPFSASFTRASLNIAR 551 (586)
Q Consensus 535 ~~~~p~~~~~~~~n~aR 551 (586)
....++.+++.+.+++|
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 227 LPDVPRALLALALNLYR 243 (243)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 32456777888777754
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.49 E-value=0.00083 Score=71.49 Aligned_cols=223 Identities=17% Similarity=0.168 Sum_probs=123.0
Q ss_pred CCCch-hhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007889 316 PSLSW-QRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGY 394 (586)
Q Consensus 316 P~~s~-~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~ 394 (586)
|..+. .++.++-..++++++||.++.. .+++..|-+-+-. ..+- |. ++..++.+.+. ++.+.-|+
T Consensus 79 ~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~Q---~~---p~L~~~~~~L~----~~~~~fgp 144 (376)
T PF06330_consen 79 PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQPQ---KH---PLLDGFASLLR----EMWRHFGP 144 (376)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T------SS---HHHHHHHHHHH----HHHTTS-H
T ss_pred CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCCC---CC---HHHHHHHHHHH----HHHHHcch
Confidence 55544 5568888999999999997654 4666666554443 1111 11 33344433333 34444566
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHH-
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVA- 473 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~- 473 (586)
.+..-+.++--+++.+...|.+..+ + .|.-..|-..-|.=+|...+.+...+ |++.+........++.+..
T Consensus 145 f~anmI~~STLdFi~g~~LE~~~f~-~-~p~A~~FP~fLR~ktGlsEaYA~FiF------Pk~~fpe~~~~~~y~~AIpd 216 (376)
T PF06330_consen 145 FCANMIVKSTLDFINGCWLEQKNFH-G-SPGAPDFPDFLRRKTGLSEAYAFFIF------PKALFPEVEYFIQYTPAIPD 216 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT--------TTTS-TTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-C-CCCCccccHHHHhccCcchhheeeec------ccccCChHHHHHHHHHHHHH
Confidence 6677788888899999999976432 2 34333343334444666666554333 3332221122233333333
Q ss_pred --HHHHHhcCcccchhhcc-CCCCchhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHh
Q 007889 474 --TILRLWDDLGSAKDENQ-DGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIA 550 (586)
Q Consensus 474 --~i~RL~NDI~S~kkE~~-rG~v~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~a 550 (586)
...-++|||.||=||.- -|+..|.|.-+-.-+ |+|.-+|.+.+.+-.-.+-+++.+. |.+. = ...++.+-+++
T Consensus 217 l~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~-g~S~~eaL~~l~~eti~a~~rv~~v-L~~~-d-p~ll~a~~~Fi 292 (376)
T PF06330_consen 217 LMRFINYVNDILSFYKEELVAGETGNYIHNRARVH-GVSILEALRELTDETIEAVERVRRV-LSDK-D-PELLAAWDSFI 292 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHH-HTTS---HHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHhhcccccccchhhhhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHH-hccC-C-hHHHHHHHHHH
Confidence 34459999999999976 788899998777777 9999999999877666676666554 3321 1 13444555555
Q ss_pred hhccceeccCCCCC
Q 007889 551 RMVPLMYSYDDNQR 564 (586)
Q Consensus 551 R~~~~~Y~~~D~~t 564 (586)
+..-.+......|.
T Consensus 293 ~GYi~~H~~~~RYR 306 (376)
T PF06330_consen 293 QGYIAFHTSNPRYR 306 (376)
T ss_dssp HHHHHHHHHSGGGT
T ss_pred HHHHHhhcCCCccC
Confidence 54333333334443
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.45 E-value=0.0021 Score=67.47 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=128.8
Q ss_pred CchhhH-HhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 007889 318 LSWQRI-ELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNP 396 (586)
Q Consensus 318 ~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~ 396 (586)
.|..=+ .++-..+.++++||.-|.. .+.++.|.+-+.. +.+-. - ++...+.+.+.. ...--|+.+
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~--G~~qk-h-----P~l~~v~~~l~~----~lr~fGpF~ 146 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA--GREQA-H-----PWWALVNEHFPN----VLRHFGPFC 146 (357)
T ss_pred CCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc--CCCCC-C-----cHHHHHHHHHHH----HHHHhhhhh
Confidence 444433 5666677888999997643 3446666555543 21111 1 223333333332 222335556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH--
Q 007889 397 VHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT-- 474 (586)
Q Consensus 397 ~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~-- 474 (586)
..-+.++--+++.+..-|... .+.-|.-.+|-...|.=+|.+-+.+... .|++.|.-...+..+..+...
T Consensus 147 s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~Fi------FPk~~FpE~~~~~qi~~AIp~~~ 218 (357)
T cd00686 147 SLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASL------WPKEQFNERSLFLEITSAIAQME 218 (357)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEe------cchhhCchHhhHHHhhHHHHHHH
Confidence 666677778999999988663 3335666666666666666665544322 244443322222333334333
Q ss_pred -HHHHhcCcccchhhccC-CCCchhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhh
Q 007889 475 -ILRLWDDLGSAKDENQD-GNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARM 552 (586)
Q Consensus 475 -i~RL~NDI~S~kkE~~r-G~v~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~ 552 (586)
..-++|||.||=||.-. ++-.|.|.-|.+.+ |+|..+|.+.+.+-.-.+-+++.+ .|.+.. ..++..+-++++.
T Consensus 219 ~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~-GiS~~eAL~~lt~dTv~~s~rv~~-VLse~d--p~l~~av~~Fi~G 294 (357)
T cd00686 219 NWMVWVNDLMSFYKEFDDERDQISLVKNYVVSD-EISLHEALEKLTQDTLHSSKQMVA-VFSDKD--PQVMDTIECFMHG 294 (357)
T ss_pred HHHHhhhhhhheehhhcccccccchHHHhhhhc-CCCHHHHHHHHHHHHHHHHHHHHH-HhcCCC--hHHHHHHHHHHHH
Confidence 34589999999998744 45568888888889 999999999888777777766654 454432 3445555555554
Q ss_pred ccceeccCCCCCh
Q 007889 553 VPLMYSYDDNQRL 565 (586)
Q Consensus 553 ~~~~Y~~~D~~t~ 565 (586)
.-.++-....|..
T Consensus 295 YI~~Hl~~~RYRL 307 (357)
T cd00686 295 YVTWHLCDRRYRL 307 (357)
T ss_pred HhhhhhcCcchhH
Confidence 4333333344443
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=85.39 E-value=11 Score=37.46 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccc-cchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIV-SSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~-S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
....+.+...+++.+...+..|... ..||.++|++.... |+++....+......+. -+++..+. ..++-+..++
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG-ADDEQAEA---LKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHHH
Confidence 3456778889999999999888654 57899999999998 66654443333333332 22322222 2466778888
Q ss_pred HHHHhcCcccchhhc
Q 007889 475 ILRLWDDLGSAKDEN 489 (586)
Q Consensus 475 i~RL~NDI~S~kkE~ 489 (586)
..-+.||+..+....
T Consensus 161 a~Qi~dd~~D~~~d~ 175 (236)
T cd00867 161 AFQLTDDLLDVFGDA 175 (236)
T ss_pred HHHHHHHhccccCCh
Confidence 889999998876543
No 13
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=80.64 E-value=30 Score=35.12 Aligned_cols=183 Identities=15% Similarity=0.087 Sum_probs=93.1
Q ss_pred chhhHHhcchhhHHHHHhhhccccCCHH----HHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007889 319 SWQRIELTKPISFIYIIDDIFDIYGALD----VLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGY 394 (586)
Q Consensus 319 s~~Rl~laK~~~l~~viDD~fD~ygt~e----El~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~ 394 (586)
...|-.+.-+-.+.-.+||+-|...... .|+-+-+++...-.+..+..+....++..++..+.....
T Consensus 17 ~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~~--------- 87 (267)
T PF00494_consen 17 KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRYG--------- 87 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCSH---------
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHHh---------
Confidence 4556566667788888999999666332 244455555542111112223344466665555444211
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCch-hHHhhcccCchHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITS-ETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~-e~~e~~~~~p~l~~~~~ 473 (586)
--++.+.+++.++.+... ...++|++|+......+.|+...+++-.++.. -++ +..+... .+-.+..
T Consensus 88 ----l~~~~l~~li~~~~~dl~---~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~~~~~~~a~---~lG~alq 155 (267)
T PF00494_consen 88 ----LPREPLLELIDGMEMDLE---FTPYETFADLERYCYYVAGSVGLLLLQLLGAH--DPDEAARDAAR---ALGRALQ 155 (267)
T ss_dssp ----HHHHHHHHHHHHHHHCTT----S--SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSHHHHHHHHH---HHHHHHH
T ss_pred ----hhHHHHHHHHHHhccccc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc--cchhhHHHHHH---HHHHHHH
Confidence 234555677777664433 24578999999988888887666665555432 122 2232221 1111111
Q ss_pred HHHHHhcCcccchhh-ccCCCC--chhhhhHhhcCCCCCHHHHHHH----------HHHHHHHHHHHHHH
Q 007889 474 TILRLWDDLGSAKDE-NQDGND--GSYIYYYMMEHQDVTAEDAQKH----------AMDKISDAWKRLNQ 530 (586)
Q Consensus 474 ~i~RL~NDI~S~kkE-~~rG~v--~n~V~cyMke~~g~S~EeA~~~----------i~~~i~~~wK~ln~ 530 (586)
+ +.++-|+. .. ..+|-+ +. =.|.++ |++.++-... +..++..+...+.+
T Consensus 156 l-~nilRd~~---~D~~~~gR~ylP~---d~l~~~-gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~ 217 (267)
T PF00494_consen 156 L-TNILRDIP---EDALRRGRIYLPL---DDLRRF-GVTPEDLLAGRPRSERLRALIRELAARARAHLDE 217 (267)
T ss_dssp H-HHHHHTHH---HH-HHTT---S-H---HHHHHT-TSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHhH---HHHHhcccccCCc---hhHHHc-CCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333443 33 345543 33 246788 9888765432 44555555544444
No 14
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=66.98 E-value=1.3e+02 Score=31.82 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
.+...+.+....++.+-+.+..|... ..+|+++|++.-..=+|.....+...-++-...+++..+.+ -++-...++
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l---~~~G~~lG~ 208 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDL---YEYGKHLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHH
Confidence 34567777888888888878776533 34799999987665555443322111111113344444332 457778888
Q ss_pred HHHHhcCcccchh
Q 007889 475 ILRLWDDLGSAKD 487 (586)
Q Consensus 475 i~RL~NDI~S~kk 487 (586)
..-+.||+..+.-
T Consensus 209 aFQi~DDild~~~ 221 (322)
T TIGR02749 209 AFQVVDDILDFTG 221 (322)
T ss_pred HHHHHHHhccCCC
Confidence 8899999988753
No 15
>PLN02857 octaprenyl-diphosphate synthase
Probab=64.54 E-value=97 Score=34.29 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATI 475 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i 475 (586)
+...+.+...+++.+-+.+..+.. +.-+|.++|++....=+|.....+...-++--..+++..+.+ .++-+..++.
T Consensus 228 ~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l---~~fG~~LGiA 303 (416)
T PLN02857 228 VIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQM---YEYGKNLGLA 303 (416)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 456777778888888777777764 345799999987766665543322111111112455544332 4567778888
Q ss_pred HHHhcCcccchh
Q 007889 476 LRLWDDLGSAKD 487 (586)
Q Consensus 476 ~RL~NDI~S~kk 487 (586)
.-+.||+..+..
T Consensus 304 FQI~DDiLD~~~ 315 (416)
T PLN02857 304 FQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHhhcC
Confidence 889999988753
No 16
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=64.42 E-value=1.1e+02 Score=31.09 Aligned_cols=89 Identities=13% Similarity=0.049 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
.....+.+.....+.+-..+..|... ..||.++|++....-+|.....+....++--..+++..+. ..++-+..++
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~---l~~~g~~lG~ 183 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEA---LKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 34566777888889998888888654 5799999999987777765443322221111123343322 2467777788
Q ss_pred HHHHhcCcccchh
Q 007889 475 ILRLWDDLGSAKD 487 (586)
Q Consensus 475 i~RL~NDI~S~kk 487 (586)
..-+.||+..+..
T Consensus 184 afQi~DD~ld~~~ 196 (259)
T cd00685 184 AFQIQDDILDLFG 196 (259)
T ss_pred HHHHHHHhhcccC
Confidence 8889999877654
No 17
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=63.51 E-value=1.8e+02 Score=29.76 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=62.7
Q ss_pred HHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhcccc-CCHHH----HHHHHHHHhh-cCCCCCCCCChhHHHHHHHHH
Q 007889 305 WYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIY-GALDV----LTLFTEAINR-WDLGGIEQLPECMKICFKALN 378 (586)
Q Consensus 305 ~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~y-gt~eE----l~~ft~ai~r-WD~~~~~~lPeymk~~f~aL~ 378 (586)
+|+|+.-.. | ...|-.+.-+-.+.=.+||+-|.. ++.++ |+-+-++++. .... |. -++..+|.
T Consensus 7 sf~~a~~~l--p--~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~~~g~-----~~--~pv~~aL~ 75 (266)
T TIGR03464 7 NFPVASLLL--P--ARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAIYSGE-----PA--APVFVALA 75 (266)
T ss_pred cHHHHHHhC--C--HHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhCCC-----CC--ChHHHHHH
Confidence 455554323 3 234544455666777899999974 44443 3334444432 1111 11 14566666
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHH
Q 007889 379 DITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFF 448 (586)
Q Consensus 379 ~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~ 448 (586)
+++.+. +.. ++.+.+++.++.... .....+|++|.......+.|+-..+++-.+
T Consensus 76 ~~~~~~--------~l~-----~~~~~~li~~~~~Dl---~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~ 129 (266)
T TIGR03464 76 RTVQRH--------GLP-----IEPFLDLLDAFRQDV---VVTRYATWAELLDYCRYSANPVGRLVLDLY 129 (266)
T ss_pred HHHHHc--------CCC-----hHHHHHHHHHHHHhc---cCCCCCCHHHHHHHHHHhHHHHHHHHHHHc
Confidence 655532 211 234556666654332 234567999888888888876655554443
No 18
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=57.69 E-value=2.2e+02 Score=28.91 Aligned_cols=197 Identities=17% Similarity=0.159 Sum_probs=94.9
Q ss_pred hhhHHhcchhhHHHHHhhhccccCCH-----HHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007889 320 WQRIELTKPISFIYIIDDIFDIYGAL-----DVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGY 394 (586)
Q Consensus 320 ~~Rl~laK~~~l~~viDD~fD~ygt~-----eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~ 394 (586)
..|-.+.-+-.+.-.+||+-|..... ..|+-+-+++..-.... -|. -++..+|..+..+ .+
T Consensus 24 ~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~~---~~~--~pv~~al~~~~~~--------~~- 89 (265)
T cd00683 24 ELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWGG---APT--HPVLRALADLARR--------YG- 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcCC---CCC--ChHHHHHHHHHHH--------cC-
Confidence 44555555667777799999965422 23444444444311111 111 1455666555542 11
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
--++.+.+++.++..... ....||++|.......+.|+-..+++-.+ |..-+++......+.-.-+++++
T Consensus 90 ----l~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~--~~~~~~~~~~~A~~lG~Alqltn- 159 (265)
T cd00683 90 ----IPREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVF--GASSDEAALERARALGLALQLTN- 159 (265)
T ss_pred ----CCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHh--CCCCChHHHHHHHHHHHHHHHHH-
Confidence 113556677777765544 35678998887777777775544443333 32112222221111111222222
Q ss_pred HHHHhcCcccchhhccCCCC--chhhhhHhhcCCCCCHHHH---------HHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 007889 475 ILRLWDDLGSAKDENQDGND--GSYIYYYMMEHQDVTAEDA---------QKHAMDKISDAWKRLNQECLSPNPFSASFT 543 (586)
Q Consensus 475 i~RL~NDI~S~kkE~~rG~v--~n~V~cyMke~~g~S~EeA---------~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~ 543 (586)
++.|+. ...++|-+ +.- -|.++ |+|.++- ..-+..++..+.+-+....-.-..+|....
T Consensus 160 ---ilRdv~---eD~~~gR~YlP~d---~l~~~-gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~ 229 (265)
T cd00683 160 ---ILRDVG---EDARRGRIYLPRE---ELARF-GVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSR 229 (265)
T ss_pred ---HHHHHH---HHHccCCCcCCHH---HHHHc-CCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhH
Confidence 233443 22345532 322 35677 8876552 244555555555444443322234675555
Q ss_pred HHHHhHh
Q 007889 544 RASLNIA 550 (586)
Q Consensus 544 ~~~~n~a 550 (586)
-.++-++
T Consensus 230 ~~~~~~~ 236 (265)
T cd00683 230 FCVRAAA 236 (265)
T ss_pred HHHHHHH
Confidence 4444443
No 19
>PLN02890 geranyl diphosphate synthase
Probab=56.96 E-value=2.1e+02 Score=31.84 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
.++..+.++...++.+-+.+..|... ..+|+++|++....-+|.....+...-++--..+++..+.+ -.+-+..++
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~~-~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l---~~fG~~lGl 302 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSRE-QRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLA---FEYGRNLGL 302 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHH
Confidence 35677888899999999999888743 45899999987655555443322211111112355554433 467777888
Q ss_pred HHHHhcCcccchh
Q 007889 475 ILRLWDDLGSAKD 487 (586)
Q Consensus 475 i~RL~NDI~S~kk 487 (586)
..-+.||+..|.-
T Consensus 303 AFQI~DDiLD~~g 315 (422)
T PLN02890 303 AFQLIDDVLDFTG 315 (422)
T ss_pred HHHHHHHHHhhcC
Confidence 8889999988754
No 20
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=54.46 E-value=2.9e+02 Score=29.29 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
.....+.+....++.+-..+-.+.... +|.++|+++-..=+|.....+...-++--..+++..+.+ -.+-+..++
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l---~~~g~~lGl 208 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEAL---EDYGRNLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHhhH
Confidence 356678888999999999888886655 999999998776666544333222111112234544443 567788888
Q ss_pred HHHHhcCcccchhh-ccCCCC---------chhhhhHhhcC
Q 007889 475 ILRLWDDLGSAKDE-NQDGND---------GSYIYYYMMEH 505 (586)
Q Consensus 475 i~RL~NDI~S~kkE-~~rG~v---------~n~V~cyMke~ 505 (586)
..-+.||+..+.-+ ..-|+. .++..++.-+.
T Consensus 209 aFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~ 249 (322)
T COG0142 209 AFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEK 249 (322)
T ss_pred HHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHc
Confidence 88999999887764 223432 35555666555
No 21
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=53.97 E-value=2.6e+02 Score=28.55 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=91.2
Q ss_pred hhhHHhcchhhHHHHHhhhccccCCHHH----HHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 007889 320 WQRIELTKPISFIYIIDDIFDIYGALDV----LTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYN 395 (586)
Q Consensus 320 ~~Rl~laK~~~l~~viDD~fD~ygt~eE----l~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~ 395 (586)
..|-.++-+-.+.-.+||+-|..++.++ |+-+-+++..-..+. |. .++..++.+++... +.
T Consensus 18 ~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~g~----~~--~pv~~al~~~~~~~--------~l- 82 (266)
T TIGR03465 18 ERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYAGA----PS--HPVARALADPARRF--------DL- 82 (266)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhCCC----CC--ChHHHHHHHHHHHc--------CC-
Confidence 3455555666777789999997554433 222223333211111 21 24555555544321 11
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATI 475 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i 475 (586)
-+..+.+++.++.+... ....+|++|+......+.|+-..+++-.+ |.. ++....... .+-.+..+
T Consensus 83 ----~~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~vg~l~~~ll--g~~-~~~~~~~a~---~lG~Alql- 148 (266)
T TIGR03465 83 ----PQEDFLEVIDGMEMDLE---QTRYPDFAELDLYCDRVAGAVGRLSARIF--GAT-DARTLEYAH---HLGRALQL- 148 (266)
T ss_pred ----CHHHHHHHHHHHHHHcC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHh--CCC-ChhHHHHHH---HHHHHHHH-
Confidence 12446677777664433 34568999888887777776555443333 421 122222111 12222221
Q ss_pred HHHhcCcccchhhccCCCC--chhhhhHhhcCCCCCHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 007889 476 LRLWDDLGSAKDENQDGND--GSYIYYYMMEHQDVTAE---------DAQKHAMDKISDAWKRLNQECLSPNPFSASFTR 544 (586)
Q Consensus 476 ~RL~NDI~S~kkE~~rG~v--~n~V~cyMke~~g~S~E---------eA~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~~ 544 (586)
+-++-|+. ...++|-+ +- =.|.++ |+|.+ ...+-+..+++.+..-+.+..---..+|.....
T Consensus 149 tnilRdv~---eD~~~gR~ylP~---~~l~~~-gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~ 221 (266)
T TIGR03465 149 TNILRDVG---EDARRGRIYLPA---EELQRF-GVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQR 221 (266)
T ss_pred HHHHHHhH---HHHhCCCeecCH---HHHHHc-CCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhH
Confidence 12333442 22345643 21 135677 88765 334455566666665544432112346754443
Q ss_pred HH
Q 007889 545 AS 546 (586)
Q Consensus 545 ~~ 546 (586)
.+
T Consensus 222 ~~ 223 (266)
T TIGR03465 222 AA 223 (266)
T ss_pred HH
Confidence 33
No 22
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=51.34 E-value=12 Score=35.57 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=26.9
Q ss_pred cCCCCchhhhhHhhcCCCCCHHHHHHHHHHH
Q 007889 490 QDGNDGSYIYYYMMEHQDVTAEDAQKHAMDK 520 (586)
Q Consensus 490 ~rG~v~n~V~cyMke~~g~S~EeA~~~i~~~ 520 (586)
.||-.+..|.||+.++.+.|.++|.++++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~i 149 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRKI 149 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHhc
Confidence 3666788999999998899999999999884
No 23
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=45.85 E-value=3.9e+02 Score=28.25 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
....+.++....+.+-..+..|.. +.-+|.++|++.-..-+|..+..+ +..+ ++ ..+++..+.+ -++-+..+
T Consensus 130 ~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~a-g~~~~~~~~l---~~~g~~lG 203 (319)
T TIGR02748 130 AHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIAS-GANEAIVKKL---YWFGYYVG 203 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 456777888889999888887753 335799999988766666543322 2222 11 2244433322 45667778
Q ss_pred HHHHHhcCcccchh
Q 007889 474 TILRLWDDLGSAKD 487 (586)
Q Consensus 474 ~i~RL~NDI~S~kk 487 (586)
+..-+.||+..+..
T Consensus 204 ~aFQI~DDilD~~~ 217 (319)
T TIGR02748 204 MSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHccC
Confidence 88889999977643
No 24
>CHL00151 preA prenyl transferase; Reviewed
Probab=41.22 E-value=4.6e+02 Score=27.76 Aligned_cols=87 Identities=7% Similarity=0.000 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH-hcCCCchhHHhhcccCchHHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL-LGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
....+.+....++.+-+.+..|.. ..-+|.++|+.....=+|.....+...-+ ++ ..+++..+.+ -.+-...++
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~G~~lG~ 209 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLS-DADEKDHNDF---YLYGKHLGL 209 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHH
Confidence 455677888888888777766643 33478999999754444443322211111 12 2344443332 467778888
Q ss_pred HHHHhcCcccchh
Q 007889 475 ILRLWDDLGSAKD 487 (586)
Q Consensus 475 i~RL~NDI~S~kk 487 (586)
..-+.||+..+.-
T Consensus 210 aFQi~DDilD~~~ 222 (323)
T CHL00151 210 AFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHhhccc
Confidence 8899999987754
No 25
>PLN02632 phytoene synthase
Probab=35.26 E-value=5.8e+02 Score=27.20 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=56.9
Q ss_pred hhHHhcchhhHHHHHhhhccccCCH----HHHHHHHHHHhh-cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 007889 321 QRIELTKPISFIYIIDDIFDIYGAL----DVLTLFTEAINR-WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYN 395 (586)
Q Consensus 321 ~Rl~laK~~~l~~viDD~fD~ygt~----eEl~~ft~ai~r-WD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~ 395 (586)
.|..+.-+-.|.-.+||+-|..... ..|+.+-+++++ .+.. |.. ++..++.+++.+.. .
T Consensus 74 ~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~~~g~-----~~~--pv~~aL~~~~~~~~--------L- 137 (334)
T PLN02632 74 RRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDLFDGR-----PYD--MLDAALADTVSKFP--------L- 137 (334)
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHHhCCC-----CCC--hHHHHHHHHHHHCC--------C-
Confidence 4444455667777899999954422 234444444433 1111 211 45666666555321 0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFF 448 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~ 448 (586)
-++.+.+++.++..... ....+|++|+......+.|+--.+++-.+
T Consensus 138 ----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgtVG~l~l~vl 183 (334)
T PLN02632 138 ----DIQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGTVGLMSVPVM 183 (334)
T ss_pred ----ChHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHHHHHHHHHHh
Confidence 12345677777664432 34567988888887777776554444333
No 26
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=30.25 E-value=41 Score=33.23 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=28.1
Q ss_pred HHhcCcccchhhccCCC-CchhhhhHhhcCCCCCHHHHHHHHHHH
Q 007889 477 RLWDDLGSAKDENQDGN-DGSYIYYYMMEHQDVTAEDAQKHAMDK 520 (586)
Q Consensus 477 RL~NDI~S~kkE~~rG~-v~n~V~cyMke~~g~S~EeA~~~i~~~ 520 (586)
+|--++..+|+..+.-+ +.-+=.+.|+++ |+|++||+++++++
T Consensus 129 ~L~~el~~~k~~L~~rK~ierAKglLM~~~-g~sE~EAy~~lR~~ 172 (194)
T COG3707 129 ALRRELAKLKDRLEERKVIERAKGLLMKRR-GLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34444555555433222 223334689999 99999999999997
No 27
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=27.18 E-value=52 Score=25.46 Aligned_cols=28 Identities=7% Similarity=-0.059 Sum_probs=20.6
Q ss_pred CchhhhhHhhcCCCCCHHHHHHHHHHHHH
Q 007889 494 DGSYIYYYMMEHQDVTAEDAQKHAMDKIS 522 (586)
Q Consensus 494 v~n~V~cyMke~~g~S~EeA~~~i~~~i~ 522 (586)
+.-++.+.|..+ |+|+++|.+.+++.-.
T Consensus 15 I~~AkgiLm~~~-g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 15 IEQAKGILMARY-GLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHH-T--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcCHHHHHHHHHHHHH
Confidence 345667899999 9999999999988633
No 28
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.11 E-value=1e+02 Score=31.74 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=97.9
Q ss_pred ccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhh-cCC----------CCCCCCChhHHHHHHHHHHH
Q 007889 312 CFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINR-WDL----------GGIEQLPECMKICFKALNDI 380 (586)
Q Consensus 312 ~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~r-WD~----------~~~~~lPeymk~~f~aL~~~ 380 (586)
.+|+|.|..+++ +.++.+|++++|-+=| | .+.+..+..-+.| +.. +-++.|++..|+=- =.|+
T Consensus 87 ~~Fd~s~D~e~i-F~~~gALifvIDaQdd-y--~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kiet--qrdI 160 (347)
T KOG3887|consen 87 DFFDPSFDYEMI-FRGVGALIFVIDAQDD-Y--MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIET--QRDI 160 (347)
T ss_pred ccCCCccCHHHH-HhccCeEEEEEechHH-H--HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhh--HHHH
Confidence 478999999976 5889999999986533 1 3444444444555 322 44677888765422 2333
Q ss_pred HHHHHHHHHHhc--C--------CccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhH----------
Q 007889 381 TNEISNKVYKEH--G--------YNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVH---------- 440 (586)
Q Consensus 381 ~~ei~~~~~~~~--~--------~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~---------- 440 (586)
..+..+++...+ + +-.-+..-+++-+.++... ...||+|--|.+=.-+++..
T Consensus 161 ~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQkLi--------pqLptLEnlLnif~s~S~ieKafLFDv~SK 232 (347)
T KOG3887|consen 161 HQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQKLI--------PQLPTLENLLNIFISNSKIEKAFLFDVLSK 232 (347)
T ss_pred HHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHHHh--------hhchhHHHHHHHHhhccchhhhhhhhhhhe
Confidence 333332322211 0 0011233444444444433 34788887666544444321
Q ss_pred --------HHHHHHHHHhcCC--CchhHHh-----hcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcC
Q 007889 441 --------LGLVHIFFLLGHG--ITSETVR-----LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEH 505 (586)
Q Consensus 441 --------~ll~~~~~~~G~~--l~~e~~e-----~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~ 505 (586)
|+=..++-.|.+- ++-+... --..-+..-+.++.+.||.|+.+-|-+|..++- +.-|.|++.
T Consensus 233 IYiaTDS~PVdmq~YElC~d~IDV~iDl~~iYg~~~~~~~s~~d~~s~svirL~n~~vlyLrev~k~L---ALV~i~re~ 309 (347)
T KOG3887|consen 233 IYIATDSSPVDMQSYELCCDMIDVTIDLSSIYGLKEDGKGSDYDKESSSVIRLNNTTVLYLREVNKFL---ALVCIVRED 309 (347)
T ss_pred eEEecCCCcchhHHHHHHHhhhheeeehHHhhCCCCCCCCCchhhhhhhhhhhcCceEEeHHHhhhhe---EEEEEEccC
Confidence 1111222222111 1100000 001235577778889999999999999987762 344899988
Q ss_pred CCCCHH
Q 007889 506 QDVTAE 511 (586)
Q Consensus 506 ~g~S~E 511 (586)
|...+
T Consensus 310 -~~e~~ 314 (347)
T KOG3887|consen 310 -GFEKK 314 (347)
T ss_pred -Ccccc
Confidence 76544
No 29
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=24.75 E-value=2e+02 Score=26.12 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=44.6
Q ss_pred hhHHHHHHHhCCccchHHHHHHHHHHHHhhhc--CC-CC--CCCchhhhhHHhhhhhhcCcccccccccccccccccc-c
Q 007889 99 LAMIDTVQRLGIDYYFQDEIEQILQRQSIVFS--NH-GD--RHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKS-K 172 (586)
Q Consensus 99 L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~--~~-~~--~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F-~ 172 (586)
-.+|+.|++|||++-- -..|-++-+... .. .. ..--=..+|++-|.||.+| +|.----+| + ++|.= +
T Consensus 14 ~~~ie~L~~lgi~R~v----A~tlv~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-k-GKGRPik 86 (124)
T COG4738 14 YEIIELLRILGIPRNV----ATTLVCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENG-WVDEREEKK-K-GKGRPIK 86 (124)
T ss_pred HHHHHHHHHcCCCchH----HHHHHHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHcc-ccchHHhcc-c-CCCCCce
Confidence 3589999999999952 222322222110 00 00 1112357899999999999 675555555 3 23432 2
Q ss_pred -cccccchHHHhhHh
Q 007889 173 -QNISGDINGLMSLY 186 (586)
Q Consensus 173 -~~l~~dv~glL~LY 186 (586)
-.|+.+...+++-+
T Consensus 87 ~Y~Lt~~~~eIvs~i 101 (124)
T COG4738 87 LYRLTVPFDEIVSEI 101 (124)
T ss_pred EEEecCcHHHHHHHH
Confidence 23455555555554
No 30
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription]
Probab=23.78 E-value=8.1e+02 Score=25.17 Aligned_cols=76 Identities=24% Similarity=0.266 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHH
Q 007889 274 LHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTE 353 (586)
Q Consensus 274 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 353 (586)
.-+.|+..+.+|+.+ |- .-+| ++++.|.-.+. +-++.+..+.-. -+||.+=.+ +..|.+
T Consensus 6 ~~~~e~~~~~~~~~~-g~----~~~~-~Li~~ylpLV~-------~ia~k~~~r~~~---~~dDLiqiG-----~iGLi~ 64 (247)
T COG1191 6 LSKEEEEKLLEYYAE-GD----EEAR-RLIERYLPLVK-------SIARKFENRGPS---EYDDLIQIG-----MIGLIK 64 (247)
T ss_pred cchHHHHHHHHHHHh-cC----HHHH-HHHHHHHHHHH-------HHHHHHHhcCCC---chhHHHHHH-----HHHHHH
Confidence 345677788888888 22 2378 89998887665 222322222222 577777433 456889
Q ss_pred HHhhcCCCCCCCCChhH
Q 007889 354 AINRWDLGGIEQLPECM 370 (586)
Q Consensus 354 ai~rWD~~~~~~lPeym 370 (586)
||+|.|++--..+.-|.
T Consensus 65 Aieryd~~kg~kF~tyA 81 (247)
T COG1191 65 AIERYDPSKGTKFSTYA 81 (247)
T ss_pred HHHHcCcccCcchHHHH
Confidence 99999986544444443
No 31
>smart00463 SMR Small MutS-related domain.
Probab=22.55 E-value=1e+02 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 007889 505 HQDVTAEDAQKHAMDKISDAWKR 527 (586)
Q Consensus 505 ~~g~S~EeA~~~i~~~i~~~wK~ 527 (586)
| |++.++|+..+...+.++++.
T Consensus 7 H-G~~~~eA~~~l~~~l~~~~~~ 28 (80)
T smart00463 7 H-GLTVEEALTALDKFLNNARLK 28 (80)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHc
Confidence 6 999999999999999988864
No 32
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=21.26 E-value=1e+03 Score=25.53 Aligned_cols=76 Identities=13% Similarity=0.285 Sum_probs=46.1
Q ss_pred HHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHHHHHHHHHH
Q 007889 446 IFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAW 525 (586)
Q Consensus 446 ~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i~~~i~~~w 525 (586)
.-+++...++++..+.+.+ ...-.++-+-.|++=....+...+.|+. |.|..|- +.+++.+.+...++++-
T Consensus 198 ~a~A~~p~~t~~~a~~i~~--aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~YY~------~~~~~~~Rl~~f~~~A~ 268 (330)
T PF10776_consen 198 FAYAADPDLTPEDAEKIKD--AYFPWICGLHILLDYFIDQEEDREGGDL-NFVFYYP------DEEEMEERLKYFVEKAL 268 (330)
T ss_pred HHHHcCCCCCHHHHHHHHH--cccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeeeCC------CHHHHHHHHHHHHHHHH
Confidence 3344566788777666532 1222333334455545544545555654 8887552 67899999999999888
Q ss_pred HHHHH
Q 007889 526 KRLNQ 530 (586)
Q Consensus 526 K~ln~ 530 (586)
+...+
T Consensus 269 ~~~~~ 273 (330)
T PF10776_consen 269 EQASR 273 (330)
T ss_pred HHHHh
Confidence 76543
No 33
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=20.85 E-value=5.3e+02 Score=27.33 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHh-cCCCchhHHhhcccCchHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLL-GHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~-G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
.....+.++....+.+-..+..|... .-+|.++|+.+...-+|.....+ +..+. --..+++..+. ...+-+..+
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~i~~KTa~lf~~~-~~~ga~lag~~~~~~~~---l~~~g~~lG 204 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVND-PDITEENYMRVIYSKTARLFEAA-AQCSGILAGCTPEQEKG---LQDYGRYLG 204 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH---HHHHHHHHH
Confidence 34567778888889988888777543 34799999988776666553322 22221 01234443332 246777788
Q ss_pred HHHHHhcCcccchh
Q 007889 474 TILRLWDDLGSAKD 487 (586)
Q Consensus 474 ~i~RL~NDI~S~kk 487 (586)
+..-+.||+..+..
T Consensus 205 ~aFQi~DD~ld~~~ 218 (323)
T PRK10888 205 TAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHhhcccC
Confidence 88889999988754
No 34
>KOG3906 consensus Tryptophan 2,3-dioxygenase [Amino acid transport and metabolism]
Probab=20.47 E-value=5.4e+02 Score=26.87 Aligned_cols=114 Identities=25% Similarity=0.244 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHHHHHHH-------HhhhcCCCCCCCchhhhhH
Q 007889 72 IHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQ-------SIVFSNHGDRHNDLQEVAL 144 (586)
Q Consensus 72 ~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i-------~~~~~~~~~~~~dl~~~al 144 (586)
+-+++.-..+-||+||....- |-...|++|-.|-|.-+=-..--|=-.+|+.+ ||.+- ..-----||
T Consensus 78 WFKQIifelDsvR~~l~~~v~-DEtktLkiVsrl~Rv~~ILkLLv~Q~~iLeTMtpLDF~DFRkYL-----~PASGFQSL 151 (399)
T KOG3906|consen 78 WFKQIIFELDSVRKLLNNTVV-DETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKYL-----TPASGFQSL 151 (399)
T ss_pred HHHHHHHhhHHHHHHhcchhh-cchhHHHHHHhHHHHHHHHHHHHHHhhHHhhcCccchHHHHHhc-----Cccccchhh
Confidence 444554446889999986433 55667888877776543211111111233322 23221 011113489
Q ss_pred Hhhhhhh---------cCccc--cccccccccccccccccccccchHHHhhHhhhcccccCC
Q 007889 145 RFRLLRQ---------QGYYV--SPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVG 195 (586)
Q Consensus 145 ~FRLLR~---------hGy~V--S~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~g 195 (586)
.||||-- -.|+- =.|||+ |++-+- -..+..-+.||+|-|+=--++||
T Consensus 152 QFRllENKlGVlqe~Rv~YN~qhY~dvF~---dee~~~-l~~sE~eksLLeLve~WLERTPG 209 (399)
T KOG3906|consen 152 QFRLLENKLGVLQERRVKYNAQHYKDVFN---DEELKT-LNVSEEEKSLLELVESWLERTPG 209 (399)
T ss_pred hHHHHhhhhhhhhhhhccccHHHhhhccC---chhhHh-hhcccccchHHHHHHHHHhcCCC
Confidence 9999842 11221 134543 332211 11245567899999887777776
Done!