Query 007889
Match_columns 586
No_of_seqs 235 out of 899
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 5E-162 2E-166 1334.3 46.8 530 41-582 21-554 (554)
2 3m00_A Aristolochene synthase; 100.0 3E-161 9E-166 1327.7 44.8 529 41-582 16-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 3E-161 1E-165 1329.5 45.6 533 41-581 14-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 2E-155 6E-160 1290.0 49.9 531 42-581 2-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 5E-155 2E-159 1286.3 43.7 533 41-581 5-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 2E-154 7E-159 1284.8 39.6 528 41-581 34-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 7E-142 2E-146 1220.5 43.4 500 80-582 276-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 2E-141 5E-146 1210.5 44.9 498 80-582 224-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 2E-141 5E-146 1213.4 43.3 498 80-581 248-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 2E-106 7E-111 912.8 34.0 446 78-582 225-721 (727)
11 1ps1_A Pentalenene synthase; a 100.0 4E-50 1.4E-54 421.1 15.4 254 269-532 12-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2E-48 6.7E-53 401.3 19.2 243 273-532 12-264 (300)
13 3bny_A Aristolochene synthase; 100.0 5.1E-47 1.7E-51 394.7 17.5 248 268-532 21-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 8.6E-45 2.9E-49 388.1 17.2 242 282-531 66-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.7E-31 5.8E-36 288.8 18.4 242 281-531 134-389 (433)
16 1yyq_A Trichodiene synthase; t 99.7 6.1E-17 2.1E-21 171.8 13.9 248 277-552 30-294 (374)
17 3sdr_A Alpha-bisabolene syntha 96.5 0.00056 1.9E-08 79.1 1.2 45 41-88 24-68 (817)
18 3ipi_A Geranyltranstransferase 80.5 20 0.00069 36.2 13.3 125 395-528 127-260 (295)
19 4hd1_A Squalene synthase HPNC; 71.9 83 0.0029 31.3 16.7 99 321-442 40-141 (294)
20 3lmd_A Geranylgeranyl pyrophos 71.7 21 0.0007 37.2 10.8 86 395-486 160-246 (360)
21 3acx_A Dehydrosqualene synthas 67.4 86 0.0029 31.1 14.1 180 320-530 38-231 (293)
22 3rmg_A Octaprenyl-diphosphate 58.9 1.1E+02 0.0036 31.3 13.1 89 395-488 133-222 (334)
23 2ftz_A Geranyltranstransferase 57.4 68 0.0023 32.0 11.1 120 396-530 135-264 (284)
24 3oyr_A Trans-isoprenyl diphosp 57.0 81 0.0028 32.4 11.9 87 395-487 151-239 (345)
25 3mzv_A Decaprenyl diphosphate 53.7 1.4E+02 0.0047 30.6 12.9 86 395-486 139-226 (341)
26 3p8l_A Geranyltranstransferase 51.7 72 0.0025 32.1 10.2 112 406-530 157-279 (302)
27 1rtr_A Geranyltranstransferase 51.1 54 0.0018 33.0 9.2 111 405-529 148-270 (301)
28 3m0g_A Farnesyl diphosphate sy 49.4 44 0.0015 33.6 8.2 110 405-529 147-268 (297)
29 3ts7_A Geranyltranstransferase 46.5 71 0.0024 32.6 9.3 111 405-528 158-280 (324)
30 3lsn_A Geranyltranstransferase 45.7 74 0.0025 32.1 9.2 110 407-528 154-274 (304)
31 4f62_A Geranyltranstransferase 43.5 76 0.0026 32.3 8.9 111 406-529 152-274 (317)
32 4dhd_A Polyprenyl synthetase; 42.8 88 0.003 32.2 9.4 86 396-486 133-231 (358)
33 3llw_A Geranyltranstransferase 40.3 71 0.0024 32.3 8.1 112 405-529 159-280 (311)
34 2h8o_A Geranyltranstransferase 40.2 98 0.0033 31.6 9.2 111 405-529 192-314 (335)
35 3pde_A Farnesyl-diphosphate sy 39.9 1.5E+02 0.005 30.0 10.4 109 406-529 156-277 (309)
36 3p8r_A Geranyltranstransferase 38.3 79 0.0027 31.8 8.1 112 405-529 158-281 (302)
37 3npk_A Geranyltranstransferase 36.8 2.2E+02 0.0074 28.4 11.0 112 404-529 144-265 (291)
38 3pko_A Geranylgeranyl pyrophos 36.2 1.2E+02 0.0042 30.8 9.2 85 396-486 144-230 (334)
39 3lom_A Geranyltranstransferase 35.4 1.2E+02 0.004 30.7 8.8 112 405-528 158-281 (313)
40 3uca_A Geranyltranstransferase 33.4 1.7E+02 0.0057 29.8 9.6 111 405-529 180-303 (324)
41 3nf2_A Putative polyprenyl syn 31.5 89 0.003 32.2 7.3 85 396-486 144-230 (352)
42 2q80_A Geranylgeranyl pyrophos 31.3 2E+02 0.0067 28.8 9.7 85 394-486 110-195 (301)
43 3apz_A Geranyl diphosphate syn 29.9 1.9E+02 0.0064 29.5 9.4 88 395-487 153-241 (348)
44 2e8v_A Geranylgeranyl pyrophos 27.7 1.1E+02 0.0037 31.3 7.1 87 396-487 132-221 (340)
45 1rqj_A Geranyltranstransferase 26.3 1.9E+02 0.0065 28.8 8.5 112 405-530 152-276 (299)
46 1yhl_A Farnesyl pyrophosphate 24.0 2E+02 0.0067 29.5 8.3 87 396-486 152-256 (362)
47 3aqb_B Component B of hexapren 23.5 1.5E+02 0.0051 29.9 7.2 88 395-486 130-217 (325)
48 1wy0_A Geranylgeranyl pyrophos 22.2 1.4E+02 0.0046 30.5 6.6 85 396-486 138-224 (342)
49 1wmw_A Geranylgeranyl diphosph 21.0 1.8E+02 0.0062 29.4 7.2 84 396-486 131-218 (330)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=5.1e-162 Score=1334.30 Aligned_cols=530 Identities=33% Similarity=0.530 Sum_probs=490.8
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHH
Q 007889 41 KNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQ 120 (586)
Q Consensus 41 ~r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~ 120 (586)
.||+||||||+| ||+|+++++++. . +.+.+++++||++||+||....+ |++++|+|||+||||||+|||++||++
T Consensus 21 ~R~~~~~~ps~W-~~~fl~~~~~~~--~-~~~~~~~e~Lk~eVr~~l~~~~~-~~~~~l~lID~lqrLGi~~hF~~EI~~ 95 (554)
T 3g4d_A 21 MRPKADFQPSIW-GDLFLNCPDKNI--D-AETEKRHQQLKEEVRKMIVAPMA-NSTQKLAFIDSVQRLGVSYHFTKEIED 95 (554)
T ss_dssp ----CCCCCCTT-TTTTTSCCC-----C-HHHHHHHHHHHHHHHHHHHSCCS-SHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred CCCCCCCCcccc-ccccccCCCchh--h-HHHHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 499999999999 888887732331 3 44566778999999999974335 899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCchHHH
Q 007889 121 ILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLD 200 (586)
Q Consensus 121 ~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd 200 (586)
+|++||+. . . ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+|||
T Consensus 96 ~L~~i~~~-~-~-~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLd 172 (554)
T 3g4d_A 96 ELENIYHN-N-N-DAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172 (554)
T ss_dssp HHHHHHHS-C-C-CTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHhc-c-C-CCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHH
Confidence 99999986 2 1 1236999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHHhhhhHHH
Q 007889 201 EAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKE 278 (586)
Q Consensus 201 eA~~Ft~~~L~~~~~~~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~Q~~hq~E 278 (586)
||+.||++||++.+.++ +++|+++|+|||++|||+++|| ||+|| ++|+++ +++|++||||||||||+||++||+|
T Consensus 173 eA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI-~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~E 249 (554)
T 3g4d_A 173 EAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYL-SVYQDI-ESHNKALLEFAKIDFNMLQFLHRKE 249 (554)
T ss_dssp HHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHH-HHHHSS-TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHH-HHhCcC-ccccHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999988776 7889999999999999999999 99999 999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhc
Q 007889 279 IVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRW 358 (586)
Q Consensus 279 l~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rW 358 (586)
|++++||||++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+||
T Consensus 250 l~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RW 329 (554)
T 3g4d_A 250 LSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERW 329 (554)
T ss_dssp HHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccch
Q 007889 359 DLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSG 438 (586)
Q Consensus 359 D~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g 438 (586)
|++++++||+|||+||.+|+++++|++.++.+++|.++++|++++|++++++|++||+|+++||+||+||||+||++|+|
T Consensus 330 D~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg 409 (554)
T 3g4d_A 330 DIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG 409 (554)
T ss_dssp CGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSC
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeeh
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHHH
Q 007889 439 VHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAM 518 (586)
Q Consensus 439 ~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i~ 518 (586)
+++++++++++||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++
T Consensus 410 ~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~-GvSeEeA~~~i~ 488 (554)
T 3g4d_A 410 YAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY-GVTAQEAYDVFN 488 (554)
T ss_dssp HHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHH-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhc-CCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhccccccC
Q 007889 519 DKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLPT 582 (586)
Q Consensus 519 ~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~pi~~ 582 (586)
+||+++||+||++|++++++|++|+++++|+||++++||+++||||.| .||++|++||++|||+
T Consensus 489 ~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 489 KHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999999988999999999999999999999999999998 6999999999999985
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.6e-161 Score=1327.67 Aligned_cols=529 Identities=30% Similarity=0.524 Sum_probs=499.3
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHH
Q 007889 41 KNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQ 120 (586)
Q Consensus 41 ~r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~ 120 (586)
.||+||||||+| ||+|+++.+.. ... +.+.+++++||++||+||....+ |++++|+|||+||||||+|||++||++
T Consensus 16 ~R~~~~~~ps~W-~d~fl~~~~~~-~~~-~~~~~~~e~Lk~eVr~~l~~~~~-~~~~~L~lID~lqrLGi~~hF~~EI~~ 91 (550)
T 3m00_A 16 VRPVADFSPSLW-GDQFLSFSIKN-QVA-EKYAKEIEALKEQTRNMLLATGM-KLADTLNLIDTIERLGISYHFEKEIDD 91 (550)
T ss_dssp CCCCCCCCCCTT-TTTTSCCCCCH-HHH-HHHHHHHHHHHHHHHHHHTCSSC-CHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred CCCCCCCCcccc-cccccccCCcc-hhh-HHHHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 499999999999 88887765432 112 33556778899999999974335 899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCchHHH
Q 007889 121 ILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLD 200 (586)
Q Consensus 121 ~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd 200 (586)
+|++||+.|.. ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+|||
T Consensus 92 ~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLd 167 (550)
T 3m00_A 92 ILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 167 (550)
T ss_dssp HHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGT
T ss_pred HHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHH
Confidence 99999998753 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHccCcccCCcHH--Hhhhhhh-hccCCcccchHhHHHHHhhchHHHhhhhHH
Q 007889 201 EAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSS--ARNFFHG-NFQGNEYVWILDLKELANMDFKLVQSLHQK 277 (586)
Q Consensus 201 eA~~Ft~~~L~~~~~~~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~-~Y~~~~~~~n~~lLelAklDFn~~Q~~hq~ 277 (586)
||+.||++||++.+.++ +++|+++|+|||++|||+++|| ||+|| + +|+++ +++|++||||||||||+||++||+
T Consensus 168 eA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI-~~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~ 244 (550)
T 3m00_A 168 DALAFSTIHLESAAPHL-KSPLREQVTHALEQCLHKGVPRVETRFFI-SSIYDKE-QSKNNVLLRFAKLDFNLLQMLHKQ 244 (550)
T ss_dssp THHHHHHHHHHHHGGGC-CTTHHHHHHHHHHSCSTTSCHHHHHHHHH-HHTGGGC-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CccHHHHHHHHhCCCccCCchHHHHHHHH-HHHhccc-ccccHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999988776 7889999999999999999999 99999 9 99999 999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhh
Q 007889 278 EIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINR 357 (586)
Q Consensus 278 El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~r 357 (586)
||++++||||++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+|
T Consensus 245 EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~R 324 (550)
T 3m00_A 245 ELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQR 324 (550)
T ss_dssp HHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccc
Q 007889 358 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSS 437 (586)
Q Consensus 358 WD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~ 437 (586)
||++++++||+|||+||.||+|+++|++.++.+++|.++++|++++|+++++||++||+|+++||+||+||||+||++|+
T Consensus 325 WD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs 404 (550)
T 3m00_A 325 WDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATT 404 (550)
T ss_dssp CCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGG
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccc
Confidence 99999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHH
Q 007889 438 GVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHA 517 (586)
Q Consensus 438 g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i 517 (586)
|++++++++++++ +.+|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|+|++++
T Consensus 405 g~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~-GvSeEeA~~~i 482 (550)
T 3m00_A 405 TYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDY-GISTKEAMAKF 482 (550)
T ss_dssp SHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHH-TCCHHHHHHHH
T ss_pred hHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhc-CCCHHHHHHHH
Confidence 9999999887766 669999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccC-CCCChh--hHHHHHHhhccccccC
Q 007889 518 MDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYD-DNQRLP--RLEEYIKSLLFDNLPT 582 (586)
Q Consensus 518 ~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~--~~k~~i~~ll~~pi~~ 582 (586)
++||+++||+||++|++++++|++|+++++|+||++++||+++ ||||.| .||++|++||++|||+
T Consensus 483 ~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 483 QNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 9999999999999999988999999999999999999999998 999998 5999999999999985
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=3.3e-161 Score=1329.53 Aligned_cols=533 Identities=32% Similarity=0.529 Sum_probs=496.9
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHH
Q 007889 41 KNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQ 120 (586)
Q Consensus 41 ~r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~ 120 (586)
.|++||||||+| ||+|+++.+.. ... +.+.+++++||++||+||....+ +++++|+|||+||||||+|||++||++
T Consensus 14 ~~~~~~~~ps~W-~~~fl~~~~~~-~~~-~~~~~~~e~Lk~eVr~~l~~~~~-~~~~~L~lID~lqRLGi~~hF~~EI~~ 89 (555)
T 3n0f_A 14 ARRSADYEPNSW-DYDFLLSSDTD-ESI-EVYKDKAKKLEAEVRREINNEKA-EFLTLLELIDNVQRLGLGYRFESDIRR 89 (555)
T ss_dssp ---CCCCCCCTT-CHHHHTCC------C-HHHHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHTTCGGGSHHHHHH
T ss_pred cCCCCCCCcccc-cccccccCCcc-hhh-HHHHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 399999999999 88887765422 112 44566778999999999974322 689999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCchHHH
Q 007889 121 ILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLD 200 (586)
Q Consensus 121 ~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd 200 (586)
+|++||+..........||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+|||
T Consensus 90 ~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd 169 (555)
T 3n0f_A 90 ALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILD 169 (555)
T ss_dssp HHHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHH
Confidence 99999974000000136999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-hcCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHHhhhhHH
Q 007889 201 EAGDFSVNLLSEYAT-HLADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQK 277 (586)
Q Consensus 201 eA~~Ft~~~L~~~~~-~~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~Q~~hq~ 277 (586)
||+.||++||++.+. .+ +++|+++|+|||++|||+++|| ||+|| ++|+++ +++|++||||||||||+||++||+
T Consensus 170 eA~~Fs~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~l~Rlear~yI-~~Y~~~-~~~n~~lLelAKlDFN~~Q~~hq~ 246 (555)
T 3n0f_A 170 EARVFAISHLKELSEEKI-GKELAEQVNHALELPLHRRTQRLEAVWSI-EAYRKK-EDANQVLLELAILDYNMIQSVYQR 246 (555)
T ss_dssp HHHHHHHHHHHTCCHHHH-CHHHHHHHHHHHHSCTTTSCHHHHHHHHH-HHHTTC-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-CchHHHHHHHHhcCCcccCchHHHHHHHH-HHhccc-ccccHHHHHHHHHhHHHHHHHhHH
Confidence 999999999998765 45 7789999999999999999999 99999 999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhh
Q 007889 278 EIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINR 357 (586)
Q Consensus 278 El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~r 357 (586)
||++++||||++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+|
T Consensus 247 EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~R 326 (555)
T 3n0f_A 247 DLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVER 326 (555)
T ss_dssp HHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccc
Q 007889 358 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSS 437 (586)
Q Consensus 358 WD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~ 437 (586)
||++++++||+|||+||.+|+++++|++.++.+++|+++++|++++|+++++||++||+|+++||+||+||||+||++|+
T Consensus 327 WD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs 406 (555)
T 3n0f_A 327 WDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSS 406 (555)
T ss_dssp TCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHH
Q 007889 438 GVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHA 517 (586)
Q Consensus 438 g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i 517 (586)
|+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|++++
T Consensus 407 g~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~-GvSeEeA~~~i 485 (555)
T 3n0f_A 407 SGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTK-GISEELATESV 485 (555)
T ss_dssp SHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHH-TCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHc-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhcccccc
Q 007889 518 MDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLP 581 (586)
Q Consensus 518 ~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~pi~ 581 (586)
++||+++||+||++|++++++|++|+++++|+||++++||+++||||.| .||++|++||++|||
T Consensus 486 ~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 486 MNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999999999999988999999999999999999999999999998 599999999999998
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.8e-155 Score=1289.95 Aligned_cols=531 Identities=32% Similarity=0.530 Sum_probs=504.0
Q ss_pred CCCCCCCCCCCCCCccccCCC-CCCCCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHH
Q 007889 42 NGNINDSIGVSAPLKHVTYPC-EHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQ 120 (586)
Q Consensus 42 r~~~~~~ps~W~~d~~~~~~~-~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~ 120 (586)
||+||||||+| ||+|+++.+ ++. . +.+.++.+.||++||+|+... . |++++|+|||+||||||+|||++||++
T Consensus 2 r~~~~~~ps~W-~~~fl~~~~~~~~--~-~~~~~~~~~Lk~~V~~~~~~~-~-d~~~~l~liD~lqrLGi~~hF~~EI~~ 75 (543)
T 2ong_A 2 RRSGNYNPSRW-DVNFIQSLLSDYK--E-DKHVIRASELVTLVKMELEKE-T-DQIRQLELIDDLQRMGLSDHFQNEFKE 75 (543)
T ss_dssp CCCCCCCCCSS-CHHHHHHCCCSSC--S-THHHHHHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHTTGGGTTHHHHHH
T ss_pred CCCCCCCCCcC-CcccccCCCchhh--h-hHHHHHHHHHHHHHHHHHhcc-c-CHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 89999999999 566655433 331 2 345667788999999999764 5 899999999999999999999999999
Q ss_pred HHHHHHhhhcCCC---CC-CCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCc
Q 007889 121 ILQRQSIVFSNHG---DR-HNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGE 196 (586)
Q Consensus 121 ~L~~i~~~~~~~~---~~-~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE 196 (586)
+|++||+.|.+.. .. ..||++|||+|||||||||+||||||++|||++|+|++++++||+|||||||||||++|||
T Consensus 76 ~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE 155 (543)
T 2ong_A 76 ILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGE 155 (543)
T ss_dssp HHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCCh
Confidence 9999999875311 11 4699999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhh-cCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHHhh
Q 007889 197 DVLDEAGDFSVNLLSEYATH-LADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQS 273 (586)
Q Consensus 197 ~iLdeA~~Ft~~~L~~~~~~-~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~Q~ 273 (586)
+|||||+.||++||++++++ +.+++|+++|+|||++|||+++|| ||+|| ++|+++ +++|++||||||||||+||+
T Consensus 156 ~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI-~~Y~~~-~~~n~~lLelAkldFn~~Q~ 233 (543)
T 2ong_A 156 TTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWI-EWYRKR-PDMNPVVLELAILDLNIVQA 233 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHH-HHHHTC-SSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHH-HHhccC-ccccHHHHHHHHHhHHHHHH
Confidence 99999999999999999875 336789999999999999999999 99999 999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHH
Q 007889 274 LHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTE 353 (586)
Q Consensus 274 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 353 (586)
+||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+
T Consensus 234 ~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ 313 (543)
T 2ong_A 234 QFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTD 313 (543)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 99999999999999999987899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 007889 354 AINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNG 433 (586)
Q Consensus 354 ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~ 433 (586)
||+|||+++++.+|+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|
T Consensus 314 ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~ 393 (543)
T 2ong_A 314 LIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENS 393 (543)
T ss_dssp HHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHH
Q 007889 434 IVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDA 513 (586)
Q Consensus 434 ~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA 513 (586)
.+|+|+++++++++++||+.+|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|
T Consensus 394 ~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~-g~s~eeA 472 (543)
T 2ong_A 394 WQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDY-NASEAEA 472 (543)
T ss_dssp HHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHT-CCCHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHc-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhcccccc
Q 007889 514 QKHAMDKISDAWKRLNQEC-LSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLP 581 (586)
Q Consensus 514 ~~~i~~~i~~~wK~ln~e~-l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~pi~ 581 (586)
+++++++|+++||+||++| ++++++|++|+++++|+||+++++|+++||||.| .+|++|++||++|||
T Consensus 473 ~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 473 RKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 9999999999999999999 9988999999999999999999999999999998 599999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=4.7e-155 Score=1286.25 Aligned_cols=533 Identities=30% Similarity=0.477 Sum_probs=481.1
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHH
Q 007889 41 KNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQ 120 (586)
Q Consensus 41 ~r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~ 120 (586)
.||+||||||+||++|++|.++.+. . +.+.++.+.||++||+|+... . |++++|+|||+||||||+|||++||++
T Consensus 5 ~r~~~~~~ps~W~~~fl~s~~~~~~--~-~~~~~~~~~Lk~~V~~~~~~~-~-d~~~~l~lvD~lqrLGi~~hF~~EI~~ 79 (549)
T 1n1b_A 5 IRRSGNYQPALWDSNYIQSLNTPYT--E-ERHLDRKAELIVQVRILLKEK-M-EPVQQLELIHDLKYLGLSDFFQDEIKE 79 (549)
T ss_dssp ----------CCCHHHHHHCCCSTT--S-HHHHHHHHHHHHHHHHHHHSC-C-CHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred CCCCCCCCCCCCCCCcccCCCcchh--h-hHHHHHHHHHHHHHHHHHhcc-c-CHHHHHHhHHHHHhCCchhhhHHHHHH
Confidence 3999999999994444434333321 2 345667788999999999753 4 899999999999999999999999999
Q ss_pred HHHHHHhhhcC---CCCCCCchhhhhHHhhhhhhcCcccccccccccccccc-ccccccccchHHHhhHhhhcccccCCc
Q 007889 121 ILQRQSIVFSN---HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEG-KSKQNISGDINGLMSLYEASQLSIVGE 196 (586)
Q Consensus 121 ~L~~i~~~~~~---~~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g-~F~~~l~~dv~glL~LYeAs~l~~~gE 196 (586)
+|++||+.+.. .+....|||+|||+|||||||||+||||||++|||++| +|++++++||+|||||||||||++|||
T Consensus 80 ~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE 159 (549)
T 1n1b_A 80 ILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGE 159 (549)
T ss_dssp HHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCCh
Confidence 99999986531 11224699999999999999999999999999999999 999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhh---cCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHH
Q 007889 197 DVLDEAGDFSVNLLSEYATH---LADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLV 271 (586)
Q Consensus 197 ~iLdeA~~Ft~~~L~~~~~~---~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~ 271 (586)
+|||||+.||++||++++++ +.+++|+++|+|||++|||+++|| ||+|| ++|+++ +++|++||||||||||+|
T Consensus 160 ~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI-~~Y~~~-~~~n~~lLelAkldFn~~ 237 (549)
T 1n1b_A 160 DTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFI-DAYARR-PDMNPLIFELAKLNFNII 237 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHH-HHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHH-HHhccc-ccccHHHHHHHHHhHHHH
Confidence 99999999999999998875 326789999999999999999999 99999 999999 999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHH
Q 007889 272 QSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLF 351 (586)
Q Consensus 272 Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~f 351 (586)
|++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.|
T Consensus 238 Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~f 317 (549)
T 1n1b_A 238 QATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELF 317 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 99999999999999999999878999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHh
Q 007889 352 TEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLK 431 (586)
Q Consensus 352 t~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~ 431 (586)
|+||+|||+++++.+|+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+++||+||+||||+
T Consensus 318 t~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~ 397 (549)
T 1n1b_A 318 TDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLN 397 (549)
T ss_dssp HHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHHHhcCCCchhH-HhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCH
Q 007889 432 NGIVSSGVHLGLVHIFFLLGHGITSET-VRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTA 510 (586)
Q Consensus 432 ~~~~S~g~~~ll~~~~~~~G~~l~~e~-~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~ 510 (586)
+|.+|+|+++++++++++||+.+|+++ ++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+ |+|+
T Consensus 398 ~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~-g~s~ 476 (549)
T 1n1b_A 398 IAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKET-NASE 476 (549)
T ss_dssp HHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHH-CCCH
T ss_pred hcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHc-CCCH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhcccccc
Q 007889 511 EDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLP 581 (586)
Q Consensus 511 EeA~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~pi~ 581 (586)
|+|++++++||+++||++|++|++++++|++|+++++|+||++++||+++||||.| .||++|++||++|||
T Consensus 477 eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 477 EEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999988999999999999999999999999999998 599999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.1e-154 Score=1284.77 Aligned_cols=528 Identities=34% Similarity=0.559 Sum_probs=464.0
Q ss_pred CCCCCCCCCCCCCCCccccCCC-CCCCCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHH
Q 007889 41 KNGNINDSIGVSAPLKHVTYPC-EHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIE 119 (586)
Q Consensus 41 ~r~~~~~~ps~W~~d~~~~~~~-~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~ 119 (586)
.||+||||||+| ||+|+++.+ ++. . +.+.++.+.||++||+|+... . |++++|+|||+||||||+|||++||+
T Consensus 34 ~r~~~~~~ps~W-~~~fl~~~~~~~~--~-~~~~~~~~~Lk~~Vr~~~~~~-~-d~~~~l~lID~lqrLGi~~hFe~EI~ 107 (569)
T 2j5c_A 34 WIRTGGYQPTLW-DFSTIQSFDSEYK--E-EKHLMRAAGMIDQVKMMLQEE-V-DSIRRLELIDDLRRLGISCHFEREIV 107 (569)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred cCCCCCCCCCcC-CcccccCCCchhh--h-HHHHHHHHHHHHHHHHHHhcc-c-cHHHHHHHHHHHHhCCchhhhHHHHH
Confidence 399999999999 555655433 221 2 335677788999999999764 4 89999999999999999999999999
Q ss_pred HHHHHHH-hhhcCCCCCCCchhhhhHHhhhhhhcCcccccccccccccccc-ccccccccchHHHhhHhhhcccccCCch
Q 007889 120 QILQRQS-IVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEG-KSKQNISGDINGLMSLYEASQLSIVGED 197 (586)
Q Consensus 120 ~~L~~i~-~~~~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g-~F~~~l~~dv~glL~LYeAs~l~~~gE~ 197 (586)
++|++|| +.+. +...||++|||+|||||||||+||||||++|||++| +|++++++||+|||||||||||++|||+
T Consensus 108 ~~L~~i~~~~~~---~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~ 184 (569)
T 2j5c_A 108 EILNSKYYTNNE---IDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEE 184 (569)
T ss_dssp HHHHHHTTSSCC---SCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHhccC---cccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChH
Confidence 9999999 7543 235699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHHhhhh
Q 007889 198 VLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLH 275 (586)
Q Consensus 198 iLdeA~~Ft~~~L~~~~~~~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~Q~~h 275 (586)
|||||+.||++||+++++++.+++|+++|+|||++|||+++|| ||+|| ++|+++ +++|++||||||||||+||++|
T Consensus 185 iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI-~~Y~~~-~~~n~~lLelAkldFn~~Q~~h 262 (569)
T 2j5c_A 185 TLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFI-DAYKRR-PDMNPTVLELAKLDFNMVQAQF 262 (569)
T ss_dssp HHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHH-HHHTTC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHH-HHhccC-ccccHHHHHHHHHhHHHHHHHH
Confidence 9999999999999988765436789999999999999999999 99999 999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHH
Q 007889 276 QKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAI 355 (586)
Q Consensus 276 q~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai 355 (586)
|+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||
T Consensus 263 q~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai 342 (569)
T 2j5c_A 263 QQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAI 342 (569)
T ss_dssp HHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccc
Q 007889 356 NRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIV 435 (586)
Q Consensus 356 ~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~ 435 (586)
+|||+++++.+|+|||+||.+|+++++|++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|.+
T Consensus 343 ~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~v 422 (569)
T 2j5c_A 343 QRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWI 422 (569)
T ss_dssp HHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHH
Q 007889 436 SSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQK 515 (586)
Q Consensus 436 S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~ 515 (586)
|+|+++++++++++||+.+|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|++
T Consensus 423 Ssg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~-g~s~eeA~~ 501 (569)
T 2j5c_A 423 SIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEK-NASEEEARE 501 (569)
T ss_dssp HTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC-------CCHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHc-CCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccC-CCCChh--hHHHHHHhhcccccc
Q 007889 516 HAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYD-DNQRLP--RLEEYIKSLLFDNLP 581 (586)
Q Consensus 516 ~i~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~--~~k~~i~~ll~~pi~ 581 (586)
+++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.| .+|++|++||++|||
T Consensus 502 ~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 502 HVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999999999998 8899999999999999999999999 999998 599999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=7e-142 Score=1220.47 Aligned_cols=500 Identities=31% Similarity=0.545 Sum_probs=463.2
Q ss_pred HHHHHHHHhh-------cCCCCcccchhHHHHHHHhCCccchHHHHHHHHHHHHhhhcCC------CCCCCchhhhhHHh
Q 007889 80 LDAVKHILIR-------VGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNH------GDRHNDLQEVALRF 146 (586)
Q Consensus 80 k~~v~~~l~~-------~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~------~~~~~dl~~~al~F 146 (586)
.+.+++.+.. .++.|++++||+||+||||||+|||++||+++|+++|+.|.+. .....||++|||+|
T Consensus 276 ~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~F 355 (817)
T 3sdr_A 276 LEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGF 355 (817)
T ss_dssp HHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHH
Confidence 3455555543 2335899999999999999999999999999999999987641 12346999999999
Q ss_pred hhhhhcCcccccccccccccccccccccc---ccchHHHhhHhhhcccccCCchHHHHHHHHHHHHHHHHhhhc------
Q 007889 147 RLLRQQGYYVSPDVFNNFRNKEGKSKQNI---SGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHL------ 217 (586)
Q Consensus 147 RLLR~hGy~VS~dvF~~F~d~~g~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~Ft~~~L~~~~~~~------ 217 (586)
||||||||+||||||++|+|++|+|++++ .+||+|||||||||||++|||+|||||+.||++||++.+...
T Consensus 356 RlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~ 435 (817)
T 3sdr_A 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAW 435 (817)
T ss_dssp HHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHH
T ss_pred HHHHHcCCCccHhHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999754 699999999999999999999999999999999999987531
Q ss_pred -CCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccc------------hHhHHHHHhhchHHHhhhhHHHHHHH
Q 007889 218 -ADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVW------------ILDLKELANMDFKLVQSLHQKEIVQI 282 (586)
Q Consensus 218 -~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~------------n~~lLelAklDFn~~Q~~hq~El~~l 282 (586)
.+++|+++|+|||++|||+++|| ||+|| ++|+++ +.| |++||||||||||+||++||+||+++
T Consensus 436 ~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI-~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l 513 (817)
T 3sdr_A 436 NNKQNLSQEIKYALKTSWHASVPRVEAKRYC-QVYRPD-YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNV 513 (817)
T ss_dssp HHHTTHHHHHHHHHHCCSTTCCHHHHHHHHH-TTCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHhcCchhccChHHHHHHHH-HHhCcc-chhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 13679999999999999999999 99999 999988 764 99999999999999999999999999
Q ss_pred HHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCCC
Q 007889 283 SKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGG 362 (586)
Q Consensus 283 srWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~ 362 (586)
+||||++||. ++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||+++
T Consensus 514 srWwk~~~l~-~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~ 592 (817)
T 3sdr_A 514 TSWFRDSGLP-LFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSF 592 (817)
T ss_dssp HHHHHHSSGG-GCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGG
T ss_pred ceeHHhcCCC-cCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchh
Confidence 9999999995 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHH-
Q 007889 363 IEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHL- 441 (586)
Q Consensus 363 ~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~- 441 (586)
+++||+|||+||.+|+++++|++.++.++||+++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++
T Consensus 593 ~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~l 672 (817)
T 3sdr_A 593 TENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRIL 672 (817)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHH
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHhhcc--cCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHHHH
Q 007889 442 GLVHIFFLLGHGITSETVRLID--SNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMD 519 (586)
Q Consensus 442 ll~~~~~~~G~~l~~e~~e~~~--~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i~~ 519 (586)
+++++++++|+.+|+++++|+. ++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+||+|+|+|++++++
T Consensus 673 l~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~ 752 (817)
T 3sdr_A 673 LLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYS 752 (817)
T ss_dssp HHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8888889999999999999976 45699999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhccccccC
Q 007889 520 KISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLPT 582 (586)
Q Consensus 520 ~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~pi~~ 582 (586)
+|+++||+||++|++++++|++|+++++|+||++++||+++||||.| .||++|++||++|||+
T Consensus 753 ~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 753 ILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 99999999999999988999999999999999999999999999997 5999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.5e-141 Score=1210.50 Aligned_cols=498 Identities=30% Similarity=0.523 Sum_probs=464.2
Q ss_pred HHHHHHHHhh-------cCCCCcccchhHHHHHHHhCCccchHHHHHHHHHHHHhhhcCC------CCCCCchhhhhHHh
Q 007889 80 LDAVKHILIR-------VGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNH------GDRHNDLQEVALRF 146 (586)
Q Consensus 80 k~~v~~~l~~-------~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~------~~~~~dl~~~al~F 146 (586)
.+.+++.+.. .++.|++++||+||+||||||+|||++||+++|+++|+.|.+. +....||++|||+|
T Consensus 224 ~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~F 303 (764)
T 3p5p_A 224 FTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGL 303 (764)
T ss_dssp HHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHH
Confidence 3555555543 2335899999999999999999999999999999999987641 12246999999999
Q ss_pred hhhhhcCcccccccccccccccccccc---ccccchHHHhhHhhhcccccCCchHHHHHHHHHHHHHHHHhhh--cCCCC
Q 007889 147 RLLRQQGYYVSPDVFNNFRNKEGKSKQ---NISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATH--LADYD 221 (586)
Q Consensus 147 RLLR~hGy~VS~dvF~~F~d~~g~F~~---~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Ft~~~L~~~~~~--~~~~~ 221 (586)
||||||||+||||||++|+|++|+|+. ++.+|++|||||||||||+||||+|||||+.||++||++.+++ ..+++
T Consensus 304 RlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~ 383 (764)
T 3p5p_A 304 RTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTK 383 (764)
T ss_dssp HHHHHTTCCCCGGGGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSH
T ss_pred HHHHhcCCCccHhHHHhhhcCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 999999999999999999999999985 5789999999999999999999999999999999999998763 12678
Q ss_pred hHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccc------------hHhHHHHHhhchHHHhhhhHHHHHHHHHHHH
Q 007889 222 LAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVW------------ILDLKELANMDFKLVQSLHQKEIVQISKWWK 287 (586)
Q Consensus 222 L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~------------n~~lLelAklDFn~~Q~~hq~El~~lsrWwk 287 (586)
|+++|+|||++|||+++|| ||+|| ++|+++ +.| |++||||||||||+||++||+||++++||||
T Consensus 384 L~~eV~~aL~~P~~~~l~Rlear~yI-~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk 461 (764)
T 3p5p_A 384 LFKEIEYVVEYPWHMSIPRLEARSYI-DSYDDN-YVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWK 461 (764)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHH-HHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhccchHHHHHHHH-HHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHH
Confidence 9999999999999999999 99999 999988 765 9999999999999999999999999999999
Q ss_pred HhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCCCCCCCC
Q 007889 288 ELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLP 367 (586)
Q Consensus 288 ~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lP 367 (586)
++||. ++||||||++|||||++| |||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++||
T Consensus 462 ~~~l~-~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LP 538 (764)
T 3p5p_A 462 ESGMA-DINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIP 538 (764)
T ss_dssp HTSTT-TTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSC
T ss_pred hcCCC-cCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCc
Confidence 99995 999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHH
Q 007889 368 ECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIF 447 (586)
Q Consensus 368 eymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~ 447 (586)
+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++.++
T Consensus 539 eymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~ 618 (764)
T 3p5p_A 539 ECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPI 618 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 007889 448 FLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKR 527 (586)
Q Consensus 448 ~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ 527 (586)
+++|+.+|+++++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+||+|+|+|+++++++|+++||+
T Consensus 619 ~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKe 698 (764)
T 3p5p_A 619 LLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKE 698 (764)
T ss_dssp HTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999866799999999999999999999999999999999999999997899999999999999999999
Q ss_pred HHHHhcC-CCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhccccccC
Q 007889 528 LNQECLS-PNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLPT 582 (586)
Q Consensus 528 ln~e~l~-~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~pi~~ 582 (586)
||++|++ ++++|++|+++++|+||++++||+++||||.| .||++|++||++||++
T Consensus 699 ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 699 ASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999997 77899999999999999999999999999998 4999999999999997
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.5e-141 Score=1213.42 Aligned_cols=498 Identities=30% Similarity=0.514 Sum_probs=467.1
Q ss_pred HHHHHHHHhh-------cCCCCcccchhHHHHHHHhCCccchHHHHHHHHHHHHhhhcCCC------CCCCchhhhhHHh
Q 007889 80 LDAVKHILIR-------VGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHG------DRHNDLQEVALRF 146 (586)
Q Consensus 80 k~~v~~~l~~-------~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~------~~~~dl~~~al~F 146 (586)
.+.+++.+.. .++.|++++||+||+||||||+|||++||+++|+++|+.|.+.. ....||++|||+|
T Consensus 248 ~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~F 327 (785)
T 3s9v_A 248 LDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGL 327 (785)
T ss_dssp HHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHH
Confidence 3555555543 23358999999999999999999999999999999999876421 2346999999999
Q ss_pred hhhhhcCcccccccccccccccccccccc---ccchHHHhhHhhhcccccCCchHHHHHHHHHHHHHHHHhhh-------
Q 007889 147 RLLRQQGYYVSPDVFNNFRNKEGKSKQNI---SGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATH------- 216 (586)
Q Consensus 147 RLLR~hGy~VS~dvF~~F~d~~g~F~~~l---~~dv~glL~LYeAs~l~~~gE~iLdeA~~Ft~~~L~~~~~~------- 216 (586)
||||||||+||||||++|+|++|+|++++ .+|++|||||||||||+||||+|||||+.||++||++.+..
T Consensus 328 RlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~ 407 (785)
T 3s9v_A 328 RILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKW 407 (785)
T ss_dssp HHHHHTTCCCCGGGGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTT
T ss_pred HHHHhcCCCCCHHHHHHHHhcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999998754 79999999999999999999999999999999999998753
Q ss_pred cCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccc------------hHhHHHHHhhchHHHhhhhHHHHHHH
Q 007889 217 LADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVW------------ILDLKELANMDFKLVQSLHQKEIVQI 282 (586)
Q Consensus 217 ~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~------------n~~lLelAklDFn~~Q~~hq~El~~l 282 (586)
..+++|+++|+|||++|||+++|| ||+|| ++|+++ +.| |++||||||||||+||++||+||+++
T Consensus 408 ~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI-~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l 485 (785)
T 3s9v_A 408 AFKKNIRGEVEYALKYPWHKSMPRLEARSYI-ENYGPD-DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDL 485 (785)
T ss_dssp CSSSCHHHHHHHHHHSCGGGCCHHHHHHHHH-HHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHhCCccccCchHHHHHHHH-HHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 126789999999999999999999 99999 999988 765 99999999999999999999999999
Q ss_pred HHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCCC
Q 007889 283 SKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGG 362 (586)
Q Consensus 283 srWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~ 362 (586)
+||||++||. ++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||+++
T Consensus 486 srWwk~~~l~-~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~ 564 (785)
T 3s9v_A 486 RRWWKSSGFT-DLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSL 564 (785)
T ss_dssp HHHHHHTTTT-SCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSS
T ss_pred hHHHHHcCCC-cCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchh
Confidence 9999999995 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHH
Q 007889 363 IEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLG 442 (586)
Q Consensus 363 ~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~l 442 (586)
+++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++
T Consensus 565 ~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l 644 (785)
T 3s9v_A 565 VDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTV 644 (785)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHH
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHHHHHHH
Q 007889 443 LVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKIS 522 (586)
Q Consensus 443 l~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i~~~i~ 522 (586)
+++++++||+.+|+++++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+||+|+|+|+++++++|+
T Consensus 645 ~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie 724 (785)
T 3s9v_A 645 VLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVME 724 (785)
T ss_dssp HHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999997667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccCCCCChh-h--HHHHHHhhcccccc
Q 007889 523 DAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP-R--LEEYIKSLLFDNLP 581 (586)
Q Consensus 523 ~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~--~k~~i~~ll~~pi~ 581 (586)
++||+||++|++++ +|++|+++++|++|++++||+++||||.| . ||++|++||++||.
T Consensus 725 ~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 725 NALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999877 99999999999999999999999999998 5 99999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2.1e-106 Score=912.76 Aligned_cols=446 Identities=25% Similarity=0.353 Sum_probs=379.1
Q ss_pred HHHHHHHHHHhh---cCCCCcccchhHHHHHHHhCCccchHHHHHHHHHHHHhhhcCCC------CCCCchhhhhHHhhh
Q 007889 78 KKLDAVKHILIR---VGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHG------DRHNDLQEVALRFRL 148 (586)
Q Consensus 78 ~lk~~v~~~l~~---~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~------~~~~dl~~~al~FRL 148 (586)
-|+..|++.... .++.|++++||+||+||||||+|||++||+++|+++|+.|...+ ....||++|||+|||
T Consensus 225 YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRL 304 (727)
T 3pya_A 225 YLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRL 304 (727)
T ss_dssp HHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHH
Confidence 445555544322 23358999999999999999999999999999999999875321 224699999999999
Q ss_pred hhhcCccccccccccccccccccc---cccccchHHHhhHhhhcccccCCchHHHHHHHHHHHHHHHHhhhc-------C
Q 007889 149 LRQQGYYVSPDVFNNFRNKEGKSK---QNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHL-------A 218 (586)
Q Consensus 149 LR~hGy~VS~dvF~~F~d~~g~F~---~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Ft~~~L~~~~~~~-------~ 218 (586)
||||||+||||||++|+ ++|+|+ +++.+|++|||||||||||++|||+|||||+.||++||++.+... .
T Consensus 305 LRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~ 383 (727)
T 3pya_A 305 LRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWII 383 (727)
T ss_dssp HHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEE
T ss_pred HHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 99999999999999999 779998 345789999999999999999999999999999999999987531 1
Q ss_pred CCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCccc-------------chHhHHHHHhhchHHHhhhhHHHHHHHH
Q 007889 219 DYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYV-------------WILDLKELANMDFKLVQSLHQKEIVQIS 283 (586)
Q Consensus 219 ~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~-------------~n~~lLelAklDFn~~Q~~hq~El~~ls 283 (586)
+++|+++|+|||++|||+++|| ||+|| ++|+++ ++ +|++||||||||||+||++||+||++++
T Consensus 384 ~~~L~~~V~~aL~~P~~~~l~RleaR~yI-~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~ls 461 (727)
T 3pya_A 384 MKDLPGEIGFALEIPWYASLPRVETRFYI-DQYGGE-NDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQ 461 (727)
T ss_dssp CSCHHHHHHHHHHSCGGGCCHHHHHHHHH-HHCCGG-GCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCcHhcCChHHHHHHHH-HHhccC-cchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhh
Confidence 4789999999999999999999 99999 999976 54 5999999999999999999999999999
Q ss_pred HHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhcCCC--
Q 007889 284 KWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLG-- 361 (586)
Q Consensus 284 rWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~-- 361 (586)
||||++||. ++||||||++|||||++|++|||+||.+|+++||++++++++||+||+|| |||++||+||+|||..
T Consensus 462 rWwk~~~l~-~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~ 538 (727)
T 3pya_A 462 KWYEENRLS-EWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANAR 538 (727)
T ss_dssp HHHHHTTGG-GGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC----
T ss_pred eeHHhcCcc-cCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccc
Confidence 999999996 69999999999999999999999999999999999999999999999999 9999999999999974
Q ss_pred -------CCCC---CChh--HHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 007889 362 -------GIEQ---LPEC--MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEY 429 (586)
Q Consensus 362 -------~~~~---lPey--mk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEY 429 (586)
+.+. +|+| ||+||.||++++||++.++.++||+++++|++++|.++++++++||+ + +|
T Consensus 539 ~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E- 608 (727)
T 3pya_A 539 RSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE- 608 (727)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH-
T ss_pred cccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc-
Confidence 3333 3887 89999999999999999999999999999999999999999999987 2 33
Q ss_pred HhhccccchhHHHHHHHHHHh-cCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCC
Q 007889 430 LKNGIVSSGVHLGLVHIFFLL-GHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDV 508 (586)
Q Consensus 430 l~~~~~S~g~~~ll~~~~~~~-G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~ 508 (586)
|. +++..+.++ |..+++ ++.. +.+..|.++++.||||+||+.+|++|+
T Consensus 609 --------Ae--llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~------------------- 657 (727)
T 3pya_A 609 --------GE--LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE------------------- 657 (727)
T ss_dssp --------HH--HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-------------------
T ss_pred --------ee--eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-------------------
Confidence 22 333333333 666776 5443 444559999999999999999999865
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHhHhhhccceeccCCCCChhhHHHHHHhhccccccC
Q 007889 509 TAEDAQKHAMDKISDAWKRLNQECLSPN--PFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPT 582 (586)
Q Consensus 509 S~EeA~~~i~~~i~~~wK~ln~e~l~~~--~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~k~~i~~ll~~pi~~ 582 (586)
.+++.+.|+..|+++++.++.++ .+|++| |++++++.||.. ||++|+|+.||.+||++||--
T Consensus 658 -----~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~i~~hI~kVl~~~~~~ 721 (727)
T 3pya_A 658 -----KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDHLQTHISKVLFQKVGS 721 (727)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTSCHHHHHHHHHSCCC-
T ss_pred -----HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHHHHHHHHHHHcCcccc
Confidence 44788999999999999999755 699999 777777777875 999888999999999999864
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=4e-50 Score=421.07 Aligned_cols=254 Identities=15% Similarity=0.125 Sum_probs=228.7
Q ss_pred HHHhhhhHHHHHHHH-HHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhH-HhcchhhHHHHHhhhcccc--CC
Q 007889 269 KLVQSLHQKEIVQIS-KWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRI-ELTKPISFIYIIDDIFDIY--GA 344 (586)
Q Consensus 269 n~~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~y--gt 344 (586)
..-+..|.+|++..+ +||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||
T Consensus 12 p~~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~ 90 (337)
T 1ps1_A 12 PGRQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGEN 90 (337)
T ss_dssp CCCCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCC
Confidence 334567888887777 7999999984 59999999999999999999999999999 9999999999999999988 69
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 007889 345 LDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLP 424 (586)
Q Consensus 345 ~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vP 424 (586)
++|++.|++++.+|+.+ .+|+++++++.++.+++++++.. .++....+++++|++|++++++||+|+.+|++|
T Consensus 91 ~ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P 163 (337)
T 1ps1_A 91 PEDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAESRFWNAPC 163 (337)
T ss_dssp HHHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999864 47999999999999999998765 345567899999999999999999999999999
Q ss_pred -CHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhh
Q 007889 425 -KAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMM 503 (586)
Q Consensus 425 -tleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMk 503 (586)
|++|||++|++|+|++++++++++++|..+|+++++. +..++|+++++.++||+|||+||+||+++|+++|+|.|||+
T Consensus 164 ~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~ 242 (337)
T 1ps1_A 164 DSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRR 242 (337)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHH
T ss_pred CCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHH
Confidence 9999999999999999999999999999999987765 34458999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007889 504 EHQDVTAEDAQKHAMDKISDAWKRLNQEC 532 (586)
Q Consensus 504 e~~g~S~EeA~~~i~~~i~~~wK~ln~e~ 532 (586)
++ |+|+|+|++++.++|+++||++|++.
T Consensus 243 ~~-g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 243 EH-GWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HH-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999976
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2e-48 Score=401.34 Aligned_cols=243 Identities=13% Similarity=0.065 Sum_probs=223.7
Q ss_pred hhhHHHHHHHH-HHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhH-HhcchhhHHHHHhhhccccCCHHHHHH
Q 007889 273 SLHQKEIVQIS-KWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRI-ELTKPISFIYIIDDIFDIYGALDVLTL 350 (586)
Q Consensus 273 ~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl~~ 350 (586)
.-|.+|++..+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 35788888877 777999997 579999999999999999999999999999 999999999999999999 78999999
Q ss_pred HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH
Q 007889 351 FTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYL 430 (586)
Q Consensus 351 ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl 430 (586)
|++++.||+.+ +.+|+|+++++.++++++++++..+. .+.++.|+.++++++ ||+|+.+|++||++|||
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 99999999875 46899999999999999999987662 356777999999997 89999999999999999
Q ss_pred hhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCC--------CchhhhhHh
Q 007889 431 KNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGN--------DGSYIYYYM 502 (586)
Q Consensus 431 ~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~--------v~n~V~cyM 502 (586)
++|++|+|++++++++++++|..+|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 159 ~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 159 EYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 999999999999999999999999999998 469999999999999999999999999999 789999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007889 503 MEHQDVTAEDAQKHAMDKISDAWKRLNQEC 532 (586)
Q Consensus 503 ke~~g~S~EeA~~~i~~~i~~~wK~ln~e~ 532 (586)
+++ |+|+|+|+++++++|+++||++|+..
T Consensus 236 ~~~-g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EES-KLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHH-TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999864
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.1e-47 Score=394.74 Aligned_cols=248 Identities=15% Similarity=0.125 Sum_probs=223.2
Q ss_pred hHHHhhhhHHHHHHHH-HHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhH-HhcchhhHHHHHhhhccccCCH
Q 007889 268 FKLVQSLHQKEIVQIS-KWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRI-ELTKPISFIYIIDDIFDIYGAL 345 (586)
Q Consensus 268 Fn~~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~ 345 (586)
|..-...|.+|+++.+ +||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.
T Consensus 21 ~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~ 98 (320)
T 3bny_A 21 FQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSF 98 (320)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CCh
Confidence 4445567889998877 77799999855 9999999999999999999999999999 999999999999999999 889
Q ss_pred HHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 007889 346 DVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPK 425 (586)
Q Consensus 346 eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPt 425 (586)
+|++.|++++.||+.+ +.+|+++++++.++++++++++..+ + .+.++.|+.++ ++++|++|+.+|++||
T Consensus 99 ~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps 167 (320)
T 3bny_A 99 EEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMG 167 (320)
T ss_dssp HHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCC
T ss_pred hhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCC
Confidence 9999999999999864 4679999999999999999998764 2 24455566677 6999999999999999
Q ss_pred HHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCC--------Cchh
Q 007889 426 AEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGN--------DGSY 497 (586)
Q Consensus 426 leEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~--------v~n~ 497 (586)
++|||++|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~ 244 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTS 244 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccch
Confidence 99999999999999999999999999999999998 469999999999999999999999999998 7899
Q ss_pred hhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007889 498 IYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQEC 532 (586)
Q Consensus 498 V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~e~ 532 (586)
|.|||+++ |+|+|+|++++.+++++.|+++|+..
T Consensus 245 V~~~m~~~-g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 245 VQILAQEA-DVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999754
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=8.6e-45 Score=388.14 Aligned_cols=242 Identities=10% Similarity=0.027 Sum_probs=221.5
Q ss_pred HHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhH-HhcchhhHHHHHhhhccc--cC-CHHHHHHHHHHHhh
Q 007889 282 ISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRI-ELTKPISFIYIIDDIFDI--YG-ALDVLTLFTEAINR 357 (586)
Q Consensus 282 lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~--yg-t~eEl~~ft~ai~r 357 (586)
+.+||+++|+. .-+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.+
T Consensus 66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 66 TRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 56999999997 447899999999999999999999999999 999999999999999996 66 99999999999998
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccc
Q 007889 358 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSS 437 (586)
Q Consensus 358 WD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~ 437 (586)
+-.. ...+|+++++++.++.+++++++..+.+ ....+++++|++++++|++||+|+.+|++||++|||++|++|+
T Consensus 145 ~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HhcC-CCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 5211 2335889999999999999998754433 3478999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHH
Q 007889 438 GVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHA 517 (586)
Q Consensus 438 g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i 517 (586)
|++++++++++++|..+|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++ |+|+|+|++++
T Consensus 220 g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~-g~s~eeA~~~v 297 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHH-SLTLEEAIGEV 297 (382)
T ss_dssp THHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHS-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcC-CCCHHHHHHHH
Confidence 999999999999999999998877 5567799999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007889 518 MDKISDAWKRLNQE 531 (586)
Q Consensus 518 ~~~i~~~wK~ln~e 531 (586)
++||+++||+||+.
T Consensus 298 ~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 298 RRRVEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999974
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=1.7e-31 Score=288.81 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=184.0
Q ss_pred HHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCC-chhhH-HhcchhhHHHHHhhhc-cccC-CHHHH-HHHHH--
Q 007889 281 QISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSL-SWQRI-ELTKPISFIYIIDDIF-DIYG-ALDVL-TLFTE-- 353 (586)
Q Consensus 281 ~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~-s~~Rl-~laK~~~l~~viDD~f-D~yg-t~eEl-~~ft~-- 353 (586)
++..|..++++... +-.|+++..+-|-.++++..|.. +.+|+ +++++++|+|++||.| |..| +.+.+ ..+..
T Consensus 134 ~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~ 212 (433)
T 3v1v_A 134 RIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAH 212 (433)
T ss_dssp HHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHH
Confidence 45589999876422 34678888874444444445999 79999 9999999999999994 9755 32221 11222
Q ss_pred -HHhhcCCCCCCCCChh-----HHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH
Q 007889 354 -AINRWDLGGIEQLPEC-----MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAE 427 (586)
Q Consensus 354 -ai~rWD~~~~~~lPey-----mk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtle 427 (586)
++.... ...+.-|.. -..+-.+++++++++...+.+. ...+++++|++|+++|++||+|+.+|++||+|
T Consensus 213 ~~~d~l~-~~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~~----q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsle 287 (433)
T 3v1v_A 213 TAIDHFH-STAEYTPTWQASLAADAPRRAYDSAMGYFVRAATPS----QSDRYRHDMARLHLGYLAEGAWAQTGHVPEVW 287 (433)
T ss_dssp TTTSCCC-CCTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHhhh-cccCCCCccccccCCchHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 121111 001100100 1245788999999997665443 47899999999999999999999999999999
Q ss_pred HHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCC-CCchhhhhHhhcCC
Q 007889 428 EYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDG-NDGSYIYYYMMEHQ 506 (586)
Q Consensus 428 EYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG-~v~n~V~cyMke~~ 506 (586)
|||++|++| |+.+++.++.+++|..+|++++++ +...+|+++++.++||+|||+||+||+++| +++|+|.|||+++
T Consensus 288 EYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~- 364 (433)
T 3v1v_A 288 EYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAERE- 364 (433)
T ss_dssp HHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHH-
T ss_pred HHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhc-
Confidence 999999999 666666778888999999998876 345668999999999999999999999995 7889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 007889 507 DVTAEDAQKHAMDKISDAWKRLNQE 531 (586)
Q Consensus 507 g~S~EeA~~~i~~~i~~~wK~ln~e 531 (586)
|+|+|+|++++.+|++++++++.+.
T Consensus 365 g~S~eeA~~~v~~~i~~~~~~F~~~ 389 (433)
T 3v1v_A 365 QLCERDAYLKAVEVHNELQHSFEAA 389 (433)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.70 E-value=6.1e-17 Score=171.82 Aligned_cols=248 Identities=10% Similarity=0.038 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHhC------------CcccchhhhchhhHHHHhhhcccCCCCCchhhH-HhcchhhHHHHHhhhccccC
Q 007889 277 KEIVQISKWWKELG------------LAKKLEFARDQPLKWYMWSMACFTDPSLSWQRI-ELTKPISFIYIIDDIFDIYG 343 (586)
Q Consensus 277 ~El~~lsrWwk~~~------------l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl-~laK~~~l~~viDD~fD~yg 343 (586)
+|-.+..+|..+.| |. .-+-..++++.+=.|.++..| |..+.+.+ .++++.+|+|++||++|..+
T Consensus 30 e~r~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~ 107 (374)
T 1yyq_A 30 EERIENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY 107 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH
T ss_pred HHHHHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH
Confidence 33344448998888 42 223355666777666666555 99999988 99999999999999999654
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007889 344 ALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQL 423 (586)
Q Consensus 344 t~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~v 423 (586)
+++..|.+.+-+ .... + .++..++.+.+.++. ...++.+..++.++|.+|+.++..|+.. .+..
T Consensus 108 --~~l~~~~~~ll~--G~~~---~---~Pl~~al~dl~~rl~----~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~ 171 (374)
T 1yyq_A 108 --PTMVNYFDDLQA--GREQ---A---HPWWALVNEHFPNVL----RHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGF 171 (374)
T ss_dssp --HHHTTHHHHHHH--TCCC---S---SHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCC
T ss_pred --HHHHHHHHHHhc--CCCC---C---ChHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCC
Confidence 667777776654 2211 1 155566666666653 3345667889999999999999999873 6778
Q ss_pred CCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhc---ccCchHHHHHHHHHHHhcCcccchhhcc-CCCCchhhh
Q 007889 424 PKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLI---DSNPPIVSSVATILRLWDDLGSAKDENQ-DGNDGSYIY 499 (586)
Q Consensus 424 PtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~---~~~p~l~~~~~~i~RL~NDI~S~kkE~~-rG~v~n~V~ 499 (586)
|+.++|...++.++|+..... |-.+|...+... +.+...++....++.|+|||.||.||.. .|+.+|+|.
T Consensus 172 p~~~~Y~~~rR~~sG~~E~~~------~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~ 245 (374)
T 1yyq_A 172 PGSHDYPQFLRRMNGLGHCVG------ASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVK 245 (374)
T ss_dssp TTCTTHHHHHHHHHHCHHHHH------HTTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHH
T ss_pred CCHHHHHHHHHhhccHHHHHH------HhhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhh
Confidence 999999999899998754332 223455444111 1123466677778999999999999998 499999999
Q ss_pred hHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhh
Q 007889 500 YYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARM 552 (586)
Q Consensus 500 cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~ 552 (586)
.++.++ |+|.++|++++.+++..+..++-+ .+. ...| .+++.+-+..|.
T Consensus 246 vl~~~~-g~S~~eAl~~v~~~~~~~~~r~~~-~L~-~~~~-~~l~al~~~irG 294 (374)
T 1yyq_A 246 NYVVSD-EISLHEALEKLTQDTLHSSKQMVA-VFS-DKDP-QVMDTIECFMHG 294 (374)
T ss_dssp HHHHHH-TCCHHHHHHHHHHHHHHHHHHHHH-HHS-SSCH-HHHHHHHHHHHH
T ss_pred hehhcC-CCCHHHHHHHHHHHHHHHHHHHHH-Hhc-cCCH-HHHHHHHHHHhH
Confidence 999999 999999999999999988888855 332 2233 345555555554
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.51 E-value=0.00056 Score=79.05 Aligned_cols=45 Identities=9% Similarity=-0.087 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHh
Q 007889 41 KNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILI 88 (586)
Q Consensus 41 ~r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 88 (586)
.||+|||+||+|++||++|+.+++. . +.+..++++|+++||+|+.
T Consensus 24 ~Rrsany~Ps~W~~~~i~sl~~~~~--~-~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 24 IRRTANPHPNVWGYDLVHSLKSPYI--D-SSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp -----------CHHHHHHTCCCGGG--S-HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCeeeccCCccc--c-hhHHHHHHHHHHHHHHHhc
Confidence 3999999999999999999887763 2 4455667789999999996
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=80.50 E-value=20 Score=36.15 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=68.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSV 472 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 472 (586)
.++..+.++....+.+-..+..|... .||.++|+..-..-+|.-...+ +..+ ++ ..+++..+.+ ..+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~la-g~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTG-GAEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 35566777778888998888888654 4899999987665555533222 2221 12 2355544332 4567778
Q ss_pred HHHHHHhcCcccchhh-----ccCCCCchhhhhHhhcCCCC--CHHHHHHHHHHHHHHHHHHH
Q 007889 473 ATILRLWDDLGSAKDE-----NQDGNDGSYIYYYMMEHQDV--TAEDAQKHAMDKISDAWKRL 528 (586)
Q Consensus 473 ~~i~RL~NDI~S~kkE-----~~rG~v~n~V~cyMke~~g~--S~EeA~~~i~~~i~~~wK~l 528 (586)
++..-+.||+..+.-. ...|+ .+...+|..+. +- ..+.|.+.+.+.++++.+.+
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~-~~~~~le~a~~~a~~~~~~A~~~L 260 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKST-SKEEALKKSIDCVKLHVAAAKETL 260 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhc-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 8888899998776432 22333 35666666544 21 14555555555555555443
No 19
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=71.86 E-value=83 Score=31.31 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=55.1
Q ss_pred hhHHhcchhhHHHHHhhhccccC-C-HHHHHHHHHHHhh-cCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccH
Q 007889 321 QRIELTKPISFIYIIDDIFDIYG-A-LDVLTLFTEAINR-WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPV 397 (586)
Q Consensus 321 ~Rl~laK~~~l~~viDD~fD~yg-t-~eEl~~ft~ai~r-WD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~ 397 (586)
.|-.+.-+-.+.=.+||+-|... . ...|+.+-+.+++ ....+. -+++.+|.+++.+.. ..
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~~~-------~pv~~al~~~~~~~~--------l~-- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGEAT-------TPAFRALQFTIATCN--------LP-- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTCCC-------SHHHHHHHHHHHHHT--------CC--
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHcC--------CC--
Confidence 34444455666778999999543 2 3445555555544 222221 156777776666431 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHH
Q 007889 398 HSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLG 442 (586)
Q Consensus 398 ~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~l 442 (586)
++.+.+++.++..... ....+|++|+......+.|+--.
T Consensus 103 ---~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~ 141 (294)
T 4hd1_A 103 ---MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGR 141 (294)
T ss_dssp ---SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHH
T ss_pred ---HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHH
Confidence 2334566677655433 34568888877776666655333
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=71.72 E-value=21 Score=37.17 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHH-HhcCCCchhHHhhcccCchHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFF-LLGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
..+..+.+++..++.+-..+..|.... ||.++|+++-..-+|.....+.-.- .++ ..+++..+.+ -.+-...+
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~la-ga~~~~~~~l---~~~g~~lG 233 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHA-GAAPEHIDAL---KNFGAAVG 233 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 456788888999999999999987655 9999999876666655433221111 112 2455544333 45777788
Q ss_pred HHHHHhcCcccch
Q 007889 474 TILRLWDDLGSAK 486 (586)
Q Consensus 474 ~i~RL~NDI~S~k 486 (586)
+..-+.||+..+.
T Consensus 234 ~aFQI~DDilD~~ 246 (360)
T 3lmd_A 234 MIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 8888999987764
No 21
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=67.35 E-value=86 Score=31.09 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=93.1
Q ss_pred hhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhh-cCCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 007889 320 WQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINR-WDLGGI--EQLPECMKICFKALNDITNEISNKVYKEHGYNP 396 (586)
Q Consensus 320 ~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~r-WD~~~~--~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~ 396 (586)
..|-.+.-+-.+.-.+||+=|......+|+.+-+.+++ .+.... ...|+ .++..+|.+++.+. +.
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~--------~l-- 105 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHK--------NI-- 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHS--------CC--
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHh--------CC--
Confidence 45665666777788899999976544447666666654 222210 00022 25667776665542 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHH
Q 007889 397 VHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATIL 476 (586)
Q Consensus 397 ~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~ 476 (586)
-++.+.+++.++... ......+|++|+......+.|+--.+++-.+ |..-.++..... ..+-.+..++.
T Consensus 106 ---~~~~~~~li~g~~~D---l~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~~~~~~~~~A---~~lG~AlQltN 174 (293)
T 3acx_A 106 ---AFQSFYNLIDTVYKD---QHFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVA---RRLGESLQLIN 174 (293)
T ss_dssp ---CHHHHHHHHHHHHHH---TTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSSCCHHHHHHH---HHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCCCcHHHHHHH---HHHHHHHHHHH
Confidence 124456666676533 3344578988888877777765444443333 432102222211 12222222222
Q ss_pred HHhcCcccchhhccCCCC--chhhhhHhhcCCCCCHHH---------HHHHHHHHHHHHHHHHHH
Q 007889 477 RLWDDLGSAKDENQDGND--GSYIYYYMMEHQDVTAED---------AQKHAMDKISDAWKRLNQ 530 (586)
Q Consensus 477 RL~NDI~S~kkE~~rG~v--~n~V~cyMke~~g~S~Ee---------A~~~i~~~i~~~wK~ln~ 530 (586)
++-|+. ....+|-+ +. -.|.++ |++.++ ..+-+..++..+..-+.+
T Consensus 175 -ilRDv~---eD~~~gR~YLP~---d~l~~~-gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 175 -ILRDVG---EDFENERIYFSK---QRLKQY-EVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp -HHHCHH---HHHHTTCCCSCH---HHHHHH-TCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHH---HHHhCCcEEeCH---HHHHHc-CCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344553 22345643 33 245678 898766 224455666666655554
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=58.92 E-value=1.1e+02 Score=31.28 Aligned_cols=89 Identities=11% Similarity=0.012 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHH-HhcCCCchhHHhhcccCchHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFF-LLGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
.+...+.++...++.+-..+..|.. +..||.++|+..-..-+|.....+...- .++ ..+++..+.+ -.+-...+
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG 207 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSV-QVGEEEVAFA---RLLGEYIG 207 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 4567788888999999999988864 3358999999887776665433222111 122 2355544332 46777788
Q ss_pred HHHHHhcCcccchhh
Q 007889 474 TILRLWDDLGSAKDE 488 (586)
Q Consensus 474 ~i~RL~NDI~S~kkE 488 (586)
+..-+.||+..+..+
T Consensus 208 ~aFQi~DD~ld~~~~ 222 (334)
T 3rmg_A 208 ICFQIKDDIFDYFDS 222 (334)
T ss_dssp HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhccCCCh
Confidence 888999999887643
No 23
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=57.39 E-value=68 Score=32.03 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHH--HHHhcCCCchhHHhhcccCchHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHI--FFLLGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
++..+.++....+.+-..+..|......||.++|+..-..-+|.....+.. -...| .+++ . .-++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHHH
Confidence 456677777889999999999976554789999998776655543222211 11123 2333 1 145677788
Q ss_pred HHHHHhcCcccchhh-ccCCCC-------chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007889 474 TILRLWDDLGSAKDE-NQDGND-------GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQ 530 (586)
Q Consensus 474 ~i~RL~NDI~S~kkE-~~rG~v-------~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~ 530 (586)
+..-+.||+..+.-. ...|+. .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~-------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV-------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999887543 233431 2222222 2678889999999999877754
No 24
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=57.05 E-value=81 Score=32.38 Aligned_cols=87 Identities=9% Similarity=-0.040 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSV 472 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 472 (586)
.++..+.++....+.+-..+..|.. +..||.++|+..-..-+|.....+ +..+ ++ ..+++..+.+ -.+-...
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSA-GVDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 4566788888899999998888854 335899999987766666543322 2222 22 2455544333 4677788
Q ss_pred HHHHHHhcCcccchh
Q 007889 473 ATILRLWDDLGSAKD 487 (586)
Q Consensus 473 ~~i~RL~NDI~S~kk 487 (586)
++..-+.||+..+.-
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888899999987753
No 25
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=53.66 E-value=1.4e+02 Score=30.55 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSV 472 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 472 (586)
.....+.++....+.+-..+..|.. +..||.++|+..-..-+|.....+ +..+ ++ ..+++..+.+ -.+-...
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIG-GAPEDQVQAL---FDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 4566777888889999999988864 345899999987666665543222 1221 12 2344544332 4577778
Q ss_pred HHHHHHhcCcccch
Q 007889 473 ATILRLWDDLGSAK 486 (586)
Q Consensus 473 ~~i~RL~NDI~S~k 486 (586)
++..-+.||+..+.
T Consensus 213 G~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 213 GIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 88888999987764
No 26
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=51.71 E-value=72 Score=32.14 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhc-cccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCccc
Q 007889 406 SLCNAFLTEAKWFASGQLPKAEEYLKNG-IVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGS 484 (586)
Q Consensus 406 ~~~~a~l~EAkW~~~g~vPtleEYl~~~-~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 484 (586)
..+.+-..+..|.. ..||.++|...- ..|++..-+.+.+-..++ ..+++..+.+ ..+-...++..-+.||+..
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDilD 230 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDLLD 230 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 45667666666653 468999999874 445443211111111122 2355544333 4577778888889999877
Q ss_pred chhh-ccCCC-----C----chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007889 485 AKDE-NQDGN-----D----GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQ 530 (586)
Q Consensus 485 ~kkE-~~rG~-----v----~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~ 530 (586)
+.-. ..-|+ . .+...++ ..+.|.+.+.+.++++.+.+..
T Consensus 231 ~~~d~~~~GK~~g~Dl~egK~T~p~l~-------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 231 ATSTEADLGKKVGRDEALNKSTYPALL-------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp TTC-----------------CCHHHHH-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHhCCChhhHHhcCCCcHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 6432 12222 1 1333222 3688999999999988877654
No 27
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=51.07 E-value=54 Score=32.99 Aligned_cols=111 Identities=11% Similarity=0.128 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHHHHHHHhcCc
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVATILRLWDDL 482 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 482 (586)
...+.+-..+..|... .+|.++|+..-..-+|.....+ +..+ ++ ..+++..+.+ -.+-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFA-VMSAADIA-NVDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHH-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777777777543 7899999998766666543222 1211 12 1455544433 46777888888999999
Q ss_pred ccchhh-ccCCCC---------chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 483 GSAKDE-NQDGND---------GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 483 ~S~kkE-~~rG~v---------~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
..+.-. ..-|+. .+...++ + .+.|.+.+.+.++++.+.+.
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~-----a--l~~a~~~a~~~~~~A~~~L~ 270 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLL-----G--KDGAEDKLTYHRDAAVDELT 270 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHH-----H--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHH-----H--HHHHHHHHHHHHHHHHHHHH
Confidence 877532 222321 1333332 1 57788888888888876664
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=49.37 E-value=44 Score=33.63 Aligned_cols=110 Identities=11% Similarity=0.140 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHH--HHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCc
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVH--IFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDL 482 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 482 (586)
...+.+-..+..|...+..||.++|+..-..-+|.....+. .-...| .+++. ...+-...++..-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~~------l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRGP------LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCHH------HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHHH------HHHHHHHHHHHHHHHHHH
Confidence 45777878888887656789999999875444443322211 111122 23331 145677778888999999
Q ss_pred ccchhh-ccCCC-----C----chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 483 GSAKDE-NQDGN-----D----GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 483 ~S~kkE-~~rG~-----v----~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
..+.-. ..-|+ . .+...++ | .|.|.+.+.+.++++...+.
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~-----~--l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLL-----G--LAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp C---------------------CCHHHHH-----C--SSHHHHHHHHHHHHHHHHTG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH-----H--HHHHHHHHHHHHHHHHHHHH
Confidence 887542 22222 1 1333332 3 46788888888888875553
No 29
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=46.51 E-value=71 Score=32.56 Aligned_cols=111 Identities=11% Similarity=0.121 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHHHHHHHhcCc
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVATILRLWDDL 482 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 482 (586)
...+.+-..+..|... .||.++|+..-..-+|.-...+ +..| ++...+++..+.+ ..+-...++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777543 7899999988544444432222 2222 2221445544332 45677778888899998
Q ss_pred ccchhh-ccCCC-----C----chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 007889 483 GSAKDE-NQDGN-----D----GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRL 528 (586)
Q Consensus 483 ~S~kkE-~~rG~-----v----~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~l 528 (586)
..+.-. ..-|+ . .+...+| | .|.|.+.+.+.++++...+
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~T~p~l~-----g--le~a~~~a~~~~~~A~~~L 280 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKPNYPALL-----G--LSGAKEKAEEMHEAALESL 280 (324)
T ss_dssp HHHTCC---------------CCCHHHHH-----C--HHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH-----H--HHHHHHHHHHHHHHHHHHH
Confidence 776432 12222 1 1333332 3 6888888888888887443
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=45.68 E-value=74 Score=32.08 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHH-HHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccc
Q 007889 407 LCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLV-HIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSA 485 (586)
Q Consensus 407 ~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~-~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~ 485 (586)
.+.+-..+..|... .||.++|+..-..-+|.....+ .+-..++...+++..+.+ ..+-...++..-+.||+..+
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD~ 228 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILDV 228 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 66777777777543 4899999988543333322221 111112222144444333 45777788888999999877
Q ss_pred hhh-ccCCCC---------chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 007889 486 KDE-NQDGND---------GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRL 528 (586)
Q Consensus 486 kkE-~~rG~v---------~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~l 528 (586)
.-+ ..-|+. .+...+| ..|.|.+.+.+.++++.+.+
T Consensus 229 ~~~~~~~GK~~g~Dl~egK~T~p~l~-------~l~~a~~~a~~~~~~A~~~L 274 (304)
T 3lsn_A 229 ESDTATLGKRQGADIARDKPTYPALL-------GLAAAKEYALELRDQALHAL 274 (304)
T ss_dssp HHHHHHC------------CCHHHHH-------CHHHHHHHHHHHHHHHHHHT
T ss_pred cCChHHhCCCcccHHhcCCccHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 532 222321 1333332 36888888888888887554
No 31
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=43.54 E-value=76 Score=32.26 Aligned_cols=111 Identities=8% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHHHHHHHhcCcc
Q 007889 406 SLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVATILRLWDDLG 483 (586)
Q Consensus 406 ~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 483 (586)
..+.+-..+..|. +..||.++|+..-..-+|.-...+ +..| ++...+++..+.+ ..+-...++..-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4666777777775 345899999988644444332221 2222 2322455544332 457777888888999997
Q ss_pred cchhh-ccCCCC---------chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 484 SAKDE-NQDGND---------GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 484 S~kkE-~~rG~v---------~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
.+.-+ ..-|+. .+...+| ..|.|.+.+.+.++++.+.+.
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~T~p~l~-------gle~a~~~a~~~~~~A~~~L~ 274 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKATYPKLL-------GLDGAKALVVRLHEQAIAQIS 274 (317)
T ss_dssp HTC----------------CCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHG
T ss_pred hccCChHhhCCCcchHHhcCCCcHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 76432 222321 2333333 268888888888888886664
No 32
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=42.84 E-value=88 Score=32.25 Aligned_cols=86 Identities=7% Similarity=-0.036 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhc
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFA----------SGQ-LPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLI 462 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~----------~g~-vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~ 462 (586)
++..+.++....+.+-..+..|.. .+. .||.++|+..-..-+|.....+ +..+ ++ ..+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAA-AKWGVLSV-SDDRGLAEAA 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHH-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH
Confidence 456778888899999999999872 223 6799999987666665543322 1211 11 2344444332
Q ss_pred ccCchHHHHHHHHHHHhcCcccch
Q 007889 463 DSNPPIVSSVATILRLWDDLGSAK 486 (586)
Q Consensus 463 ~~~p~l~~~~~~i~RL~NDI~S~k 486 (586)
-.+-...++..-+.||+..+-
T Consensus 211 ---~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 ---WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888899987664
No 33
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=40.28 E-value=71 Score=32.34 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHH-hhcccCchHHHHHHHHHHHhcC
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETV-RLIDSNPPIVSSVATILRLWDD 481 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~-e~~~~~p~l~~~~~~i~RL~ND 481 (586)
...+.+-..+..|. +..||+++|+..-..-+|.....+ +..+ ++ ..+++.. +.+ ..+-...++..-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~la-ga~~~~~~~~l---~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVAS-GIKDEELFKWL---QAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHH-CCCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHc-CCCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45667777776775 456899999987554444332221 1111 12 1344433 333 4577778888889999
Q ss_pred cccchhh-ccCCCCchhhhhHhhcCCCCC------HHHHHHHHHHHHHHHHHHHH
Q 007889 482 LGSAKDE-NQDGNDGSYIYYYMMEHQDVT------AEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 482 I~S~kkE-~~rG~v~n~V~cyMke~~g~S------~EeA~~~i~~~i~~~wK~ln 529 (586)
+..+.-+ ..-|+.... .+. ..| .|.|.+..+++++++.+.+.
T Consensus 232 iLD~~gd~~~~GK~~g~-----~~g-K~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHL-----DSA-KNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHC------------------C-CSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCccccc-----ccC-cchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9877542 333443221 222 232 58888888888888876653
No 34
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=40.24 E-value=98 Score=31.65 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHH--HHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCc
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIF--FLLGHGITSETVRLIDSNPPIVSSVATILRLWDDL 482 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~--~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 482 (586)
...+.+-..+..|... .+|.++|+..-..-+|......... ...| .+++..+.+ -.+-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777788754 6899999988776666542222111 1123 455544433 46777788888999999
Q ss_pred ccchhh-ccCCCC---------chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 483 GSAKDE-NQDGND---------GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 483 ~S~kkE-~~rG~v---------~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
..+.-. ..-|+. .+...+| | .|.|.+.+.+.++++.+.+.
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~-----~--le~a~~~a~~~~~~A~~~L~ 314 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVALR-----G--EAWAREKLQEQVAEASELLA 314 (335)
T ss_dssp HHHC-----------------CCCHHHHH-----C--HHHHHHHHHHHHHHHHHHTG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHHH-----H--HHHHHHHHHHHHHHHHHHHH
Confidence 776432 122221 1333322 3 58888888888888886653
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=39.87 E-value=1.5e+02 Score=29.96 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHHHHHHHhcCcc
Q 007889 406 SLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVATILRLWDDLG 483 (586)
Q Consensus 406 ~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 483 (586)
..+.+-..+..|. +..+|.++|...-..-+|.....+ +..+ ++ ..+++..+.+ ..+-...++..-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGLILG-QAPEAQWPAY---LQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCGGGHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556666666664 346899999988544444332221 1111 22 2344444332 456777788888999987
Q ss_pred cchhh-----------ccCCCCchhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 484 SAKDE-----------NQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 484 S~kkE-----------~~rG~v~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
.+.-. ...|+. +...+| ..+.|.+..+++++++.+.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~-------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL-------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH-------HHHHhHHHHHHHHHHHHHHHH
Confidence 76432 122222 333332 357888888888888886654
No 36
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=38.30 E-value=79 Score=31.80 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHHHHHHHhcCc
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVATILRLWDDL 482 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 482 (586)
...+.+-..+..|. +..||.++|+..-..-+|.....+ +..+ ++...+++..+. ...+-...++..-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677878887886 457899999988644444332222 2222 221123333322 245677778888899998
Q ss_pred ccchhh-ccCCCC---------chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 483 GSAKDE-NQDGND---------GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 483 ~S~kkE-~~rG~v---------~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
..+.-+ ...|+. .+...+| ..+.|.+.+.+.++++.+.++
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~-------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALL-------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HHHTTC---------------CCCHHHHH-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 776432 222321 1333332 258888888888888876654
No 37
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=36.83 E-value=2.2e+02 Score=28.40 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHHHHHHHhcC
Q 007889 404 WGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVATILRLWDD 481 (586)
Q Consensus 404 w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 481 (586)
....+.+-..+..|. +..||.++|...-..-+|.....+ +..+ ++ ..+++..+.+ ..+-...++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQI---YKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 445666666666664 346899999988544444432222 1221 22 2345544332 4677778888889999
Q ss_pred cccchhh-ccCCCCc-------hhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 482 LGSAKDE-NQDGNDG-------SYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 482 I~S~kkE-~~rG~v~-------n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
+..+.-. ...|+.. +.+.++ ..+.|.++.+++++++.+.++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~-------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL-------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHC----------------CCHHHHH-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH-------HHHHhHHHHHHHHHHHHHHHH
Confidence 9776532 2234321 222221 357888888888888876654
No 38
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=36.15 E-value=1.2e+02 Score=30.83 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
....+.+.....+.+-+.+..|.. +..||.++|++.-..-+|.....+ +..+ ++ ..+++..+.+ -.+-...+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLA-GAPQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 456677788888888888877754 346899999987555555432222 2222 22 2355544333 45667777
Q ss_pred HHHHHhcCcccch
Q 007889 474 TILRLWDDLGSAK 486 (586)
Q Consensus 474 ~i~RL~NDI~S~k 486 (586)
+..-+.||+..+.
T Consensus 218 ~aFQi~DD~ld~~ 230 (334)
T 3pko_A 218 CAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcc
Confidence 7888889887654
No 39
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=35.37 E-value=1.2e+02 Score=30.72 Aligned_cols=112 Identities=8% Similarity=0.084 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcc-ccchhHHHHHHHHHHhcCC-CchhHHhhcccCchHHHHHHHHHHHhcCc
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGI-VSSGVHLGLVHIFFLLGHG-ITSETVRLIDSNPPIVSSVATILRLWDDL 482 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~-~S~g~~~ll~~~~~~~G~~-l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 482 (586)
...+.+-..+..|... ..||.++|+..-. .|++...+.+.+ ..++.. .+++..+.+ ..+-...++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567777777777543 3789999998764 444433333333 333332 455555443 46777888888899998
Q ss_pred ccchhh-ccCCC-----C----chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 007889 483 GSAKDE-NQDGN-----D----GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRL 528 (586)
Q Consensus 483 ~S~kkE-~~rG~-----v----~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~l 528 (586)
..+.-+ ..-|+ . .+...+ + ..+.|.+.+.+.++++.+.+
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~T~p~l----~---~l~~a~~~a~~~~~~A~~~L 281 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATL----F---NKQQLEEEIAVHYQIAMDSL 281 (313)
T ss_dssp HHHHCC---------------CCCHHHH----S---CHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHhhCCCCcchhhcCCccHHHH----H---HHHHHHHHHHHHHHHHHHHH
Confidence 776432 12222 1 133322 2 36889999999888887544
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=33.40 E-value=1.7e+02 Score=29.78 Aligned_cols=111 Identities=10% Similarity=0.110 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhc-cccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHHHHHHHhcC
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNG-IVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVATILRLWDD 481 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~-~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 481 (586)
...+.+-..+..|... ..||.++|+..- ..|++. ...+ +..+ ++ ..+++..+.+ ..+-...++..-+.||
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L-~~~a-~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGEL-IKAS-IMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDD 252 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHH-HHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4567787878777543 268999999885 444443 2221 1221 22 2355544333 4577778888889999
Q ss_pred cccchhh-ccCCC-----C----chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007889 482 LGSAKDE-NQDGN-----D----GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLN 529 (586)
Q Consensus 482 I~S~kkE-~~rG~-----v----~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln 529 (586)
+..+.-. ..-|+ . .+...+| ..+.|.+.+.+.++++.+.+.
T Consensus 253 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~-------al~~a~~~a~~~~~~A~~~L~ 303 (324)
T 3uca_A 253 ILDVVGNAKDLGKNVHKDQESNKNNYITIF-------GLEECKKKCVNITEECIEILS 303 (324)
T ss_dssp HHHHCCC-----------------CHHHHH-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCCcchHhhcCCccHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 8776432 12222 1 1333222 368899999999998887664
No 41
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=31.55 E-value=89 Score=32.16 Aligned_cols=85 Identities=20% Similarity=0.121 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
++..+.++...++.+-..+..|... ..||.++|+.+-..-+|.....+ +..+ ++ ..+++..+.+ -.+-...+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLG-GADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 4567778888999999999888654 36899999987666666543322 2222 12 2455544433 46777888
Q ss_pred HHHHHhcCcccch
Q 007889 474 TILRLWDDLGSAK 486 (586)
Q Consensus 474 ~i~RL~NDI~S~k 486 (586)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888999987764
No 42
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=31.29 E-value=2e+02 Score=28.77 Aligned_cols=85 Identities=15% Similarity=0.238 Sum_probs=58.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH-hcCCCchhHHhhcccCchHHHHH
Q 007889 394 YNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL-LGHGITSETVRLIDSNPPIVSSV 472 (586)
Q Consensus 394 ~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~-~G~~l~~e~~e~~~~~p~l~~~~ 472 (586)
+.....+.+.+..++.+-..+..|......||.++|+.+-..-+|....++...-+ ++. .++ ..-.+-...
T Consensus 110 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~l 181 (301)
T 2q80_A 110 PDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTL 181 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHH
Confidence 34566678888899999999999987666799999999887766654332221111 121 221 234577788
Q ss_pred HHHHHHhcCcccch
Q 007889 473 ATILRLWDDLGSAK 486 (586)
Q Consensus 473 ~~i~RL~NDI~S~k 486 (586)
++..-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88889999987764
No 43
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=29.89 E-value=1.9e+02 Score=29.47 Aligned_cols=88 Identities=17% Similarity=0.072 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHH-HHhcCCCchhHHhhcccCchHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIF-FLLGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~-~~~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
.++..+.++...++.+-..+..|... ..+|+++|+..-..-+|.....+... ..++ ..+++..+.+ -.+-...+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLT-GQTAEVAVLA---FEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CcCHHHHHHH---HHHHHHHH
Confidence 35667777888889998888776532 34799999987655555443222111 1122 2344444332 45677778
Q ss_pred HHHHHhcCcccchh
Q 007889 474 TILRLWDDLGSAKD 487 (586)
Q Consensus 474 ~i~RL~NDI~S~kk 487 (586)
+..-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88889999887753
No 44
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=27.67 E-value=1.1e+02 Score=31.26 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHhhccccchhHHHHHHHHH-HhcCCCchhHHhhcccCchHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASG--QLPKAEEYLKNGIVSSGVHLGLVHIFF-LLGHGITSETVRLIDSNPPIVSSV 472 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g--~vPtleEYl~~~~~S~g~~~ll~~~~~-~~G~~l~~e~~e~~~~~p~l~~~~ 472 (586)
....+.+....++.+-..+..|.... ..||.++|+.+-..-+|....++...- .++ ..+++ . ...-.+-...
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~-~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALS-PSSHH-G---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHC-CC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCcHH-H---HHHHHHHHHH
Confidence 45566777888899999999998755 578999999887766665433222111 112 12221 1 2335688888
Q ss_pred HHHHHHhcCcccchh
Q 007889 473 ATILRLWDDLGSAKD 487 (586)
Q Consensus 473 ~~i~RL~NDI~S~kk 487 (586)
++..-+.||+..+.-
T Consensus 207 G~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 207 GIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccC
Confidence 899999999987753
No 45
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=26.30 E-value=1.9e+02 Score=28.82 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--h-cCCCchhHHhhcccCchHHHHHHHHHHHhcC
Q 007889 405 GSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--L-GHGITSETVRLIDSNPPIVSSVATILRLWDD 481 (586)
Q Consensus 405 ~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~-G~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 481 (586)
...+.+-..+..|... .+|.++|+..-..-+|.....+ +..+ + + ..+++..+.+ -.+-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~a-g~~~~~~~~l---~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAG-DKGRRALPVL---DKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTT-HHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4567777777777543 6899999998755555432222 2222 1 1 1234443332 4567778888899999
Q ss_pred cccchhh-ccCCCC---------chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007889 482 LGSAKDE-NQDGND---------GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQ 530 (586)
Q Consensus 482 I~S~kkE-~~rG~v---------~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~ 530 (586)
+..+.-. ..-|+. .+...+| + .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~-----~--l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALL-----G--LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHH-----C--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHH-----H--HHHHHHHHHHHHHHHHHHHHh
Confidence 8777532 122331 1333222 2 477888888888888877755
No 46
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=24.00 E-value=2e+02 Score=29.50 Aligned_cols=87 Identities=9% Similarity=0.004 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHh-----------hCCC----CCCHHHHHhhccccchhH-HHHH--HHHHHhcCCCchh
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWF-----------ASGQ----LPKAEEYLKNGIVSSGVH-LGLV--HIFFLLGHGITSE 457 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~-----------~~g~----vPtleEYl~~~~~S~g~~-~ll~--~~~~~~G~~l~~e 457 (586)
+...+.+.....+.+-..+..|. ..|. .+|.++|+..-..-+|.. .... .... ++...+++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~-lag~~~~~ 230 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLF-VSEAAASV 230 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHH-HcCCCCHH
Confidence 45677778888999999998887 3223 489999998877666654 2221 1112 22213334
Q ss_pred HHhhcccCchHHHHHHHHHHHhcCcccch
Q 007889 458 TVRLIDSNPPIVSSVATILRLWDDLGSAK 486 (586)
Q Consensus 458 ~~e~~~~~p~l~~~~~~i~RL~NDI~S~k 486 (586)
..+.+ -.+-...++..-+.||+..+.
T Consensus 231 ~~~~l---~~~g~~lG~aFQi~DD~lD~~ 256 (362)
T 1yhl_A 231 EMNLV---ERVAHLIGEYFQVQDDVMDCF 256 (362)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 33322 457777888888999987764
No 47
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=23.51 E-value=1.5e+02 Score=29.94 Aligned_cols=88 Identities=9% Similarity=0.004 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHH
Q 007889 395 NPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVAT 474 (586)
Q Consensus 395 ~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 474 (586)
.....+.++....+.+-..+..|.... .||.++|++.-..-+|.....+...-++--..+++..+.+ -.+-...++
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 205 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFNY-PVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 345667777888999999888886533 5899999988776666553322211111112455544333 467778888
Q ss_pred HHHHhcCcccch
Q 007889 475 ILRLWDDLGSAK 486 (586)
Q Consensus 475 i~RL~NDI~S~k 486 (586)
..-+.||+..+.
T Consensus 206 afQi~DD~ld~~ 217 (325)
T 3aqb_B 206 SYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888999987764
No 48
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=22.17 E-value=1.4e+02 Score=30.45 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccchhHHHHHHHHHH--hcCCCchhHHhhcccCchHHHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFL--LGHGITSETVRLIDSNPPIVSSVA 473 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~ 473 (586)
++..+.++....+.+-..+..|.... ..|.++|++.-..-+|.....+ +..+ ++ ..+++..+.+ -.+-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEAS-AKVGGIIG-TDNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHH-CCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 45567777888999999999997643 3599999988776666543322 2221 12 2355544433 46777888
Q ss_pred HHHHHhcCcccch
Q 007889 474 TILRLWDDLGSAK 486 (586)
Q Consensus 474 ~i~RL~NDI~S~k 486 (586)
+..-+.||+..+.
T Consensus 212 ~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 212 IAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8889999998764
No 49
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=21.01 E-value=1.8e+02 Score=29.37 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH-hhCCCCCCHHHHHhhccccchhH-HHHHHH--HHHhcCCCchhHHhhcccCchHHHH
Q 007889 396 PVHSLRKAWGSLCNAFLTEAKW-FASGQLPKAEEYLKNGIVSSGVH-LGLVHI--FFLLGHGITSETVRLIDSNPPIVSS 471 (586)
Q Consensus 396 ~~~~lk~~w~~~~~a~l~EAkW-~~~g~vPtleEYl~~~~~S~g~~-~ll~~~--~~~~G~~l~~e~~e~~~~~p~l~~~ 471 (586)
....+.++....+.+-..+..| ...+..||.++|++.-..-+|.. ...+.. -...| .+++.. .-.+-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag--~~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG--KTPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC--CCHHHH-----HHHHHHH
Confidence 4567778889999999999999 65435689999998876655554 222211 11222 233322 2457777
Q ss_pred HHHHHHHhcCcccch
Q 007889 472 VATILRLWDDLGSAK 486 (586)
Q Consensus 472 ~~~i~RL~NDI~S~k 486 (586)
.++..-+.||+..+.
T Consensus 204 lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCccc
Confidence 888888999987765
Done!